Query 006220
Match_columns 656
No_of_seqs 803 out of 3843
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 19:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-41 3.6E-46 368.4 39.5 268 346-656 103-390 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 3.9E-41 1.3E-45 348.7 41.9 256 344-627 6-266 (304)
3 3ow8_A WD repeat-containing pr 100.0 7.4E-41 2.5E-45 349.6 39.4 272 344-656 25-300 (321)
4 2j49_A Transcription initiatio 100.0 8.4E-44 2.9E-48 320.0 14.2 139 61-200 4-145 (148)
5 2nxp_A Transcription initiatio 100.0 1.6E-43 5.4E-48 323.8 14.1 151 44-195 5-155 (156)
6 3ow8_A WD repeat-containing pr 100.0 3.6E-40 1.2E-44 344.4 39.2 263 329-619 57-320 (321)
7 1got_B GT-beta; complex (GTP-b 100.0 1.9E-39 6.5E-44 341.4 43.7 270 343-656 47-322 (340)
8 1vyh_C Platelet-activating fac 100.0 3.9E-40 1.3E-44 356.2 37.8 262 329-619 129-410 (410)
9 2j4b_A TAF5, transcription ini 100.0 3.5E-42 1.2E-46 306.9 14.2 134 63-197 4-137 (138)
10 4gqb_B Methylosome protein 50; 100.0 4.6E-39 1.6E-43 339.4 38.5 250 347-622 78-333 (344)
11 2pbi_B Guanine nucleotide-bind 100.0 2E-38 6.8E-43 335.8 43.1 271 343-656 56-336 (354)
12 1got_B GT-beta; complex (GTP-b 100.0 1.3E-38 4.6E-43 335.0 40.6 263 329-617 76-340 (340)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-38 6.3E-43 334.7 39.0 283 343-656 7-313 (345)
14 4ery_A WD repeat-containing pr 100.0 1.5E-37 5E-42 322.1 43.0 255 343-625 15-273 (312)
15 3frx_A Guanine nucleotide-bind 100.0 2.2E-37 7.5E-42 322.8 42.3 256 344-625 10-272 (319)
16 3iz6_a 40S ribosomal protein R 100.0 4.6E-38 1.6E-42 336.2 36.2 283 340-622 55-377 (380)
17 2pbi_B Guanine nucleotide-bind 100.0 2.4E-37 8.3E-42 327.5 40.0 266 329-617 85-354 (354)
18 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4E-42 328.7 37.3 272 350-656 29-309 (344)
19 1erj_A Transcriptional repress 100.0 3.1E-37 1.1E-41 331.3 40.6 269 345-625 58-346 (393)
20 2pm7_B Protein transport prote 100.0 1.7E-37 5.7E-42 320.2 36.5 249 346-620 4-285 (297)
21 2hes_X YDR267CP; beta-propelle 100.0 4E-37 1.4E-41 322.4 39.4 250 343-621 6-281 (330)
22 1nr0_A Actin interacting prote 100.0 2.7E-37 9.3E-42 351.2 40.8 267 329-624 38-359 (611)
23 2xzm_R RACK1; ribosome, transl 100.0 2.5E-36 8.4E-41 318.0 44.6 287 343-656 13-319 (343)
24 4g56_B MGC81050 protein; prote 100.0 1E-37 3.6E-42 330.7 33.2 253 346-624 89-347 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-37 1.3E-41 324.6 36.7 271 329-625 37-340 (345)
26 4g56_B MGC81050 protein; prote 100.0 1.1E-37 3.7E-42 330.6 31.9 252 348-624 39-305 (357)
27 2ynn_A Coatomer subunit beta'; 100.0 1.4E-36 4.7E-41 314.4 37.7 262 329-620 34-302 (304)
28 3frx_A Guanine nucleotide-bind 100.0 2.6E-36 8.8E-41 314.7 39.4 261 330-621 40-318 (319)
29 2hes_X YDR267CP; beta-propelle 100.0 1.1E-36 3.7E-41 319.1 36.2 270 329-620 33-328 (330)
30 4gga_A P55CDC, cell division c 100.0 6.1E-37 2.1E-41 331.8 35.4 301 294-625 89-400 (420)
31 1erj_A Transcriptional repress 100.0 2.1E-36 7.3E-41 324.8 38.9 239 353-620 125-389 (393)
32 2xzm_R RACK1; ribosome, transl 100.0 4.9E-36 1.7E-40 315.7 35.9 261 329-621 48-341 (343)
33 4ery_A WD repeat-containing pr 100.0 1.5E-35 5.1E-40 306.9 38.5 262 329-619 44-311 (312)
34 2ymu_A WD-40 repeat protein; u 100.0 1.6E-35 5.3E-40 333.1 41.5 277 329-656 283-559 (577)
35 3bg1_A Protein SEC13 homolog; 100.0 4.1E-37 1.4E-41 320.3 26.5 249 346-620 8-293 (316)
36 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-35 3.8E-40 309.3 35.3 255 347-625 7-342 (351)
37 2ymu_A WD-40 repeat protein; u 100.0 1.6E-35 5.3E-40 333.1 38.9 254 329-617 324-577 (577)
38 1nr0_A Actin interacting prote 100.0 9.2E-36 3.2E-40 338.6 37.2 247 350-627 17-277 (611)
39 3zwl_B Eukaryotic translation 100.0 1.5E-34 5.1E-39 304.3 41.9 255 341-625 22-309 (369)
40 1gxr_A ESG1, transducin-like e 100.0 3.5E-34 1.2E-38 297.8 42.8 256 344-625 44-301 (337)
41 4aez_A CDC20, WD repeat-contai 100.0 2.9E-35 1E-39 316.5 35.1 298 298-626 81-386 (401)
42 1sq9_A Antiviral protein SKI8; 100.0 2.9E-35 1E-39 314.4 34.8 260 344-628 9-330 (397)
43 3jrp_A Fusion protein of prote 100.0 3E-35 1E-39 311.2 34.2 251 346-622 6-289 (379)
44 4aow_A Guanine nucleotide-bind 100.0 6.9E-34 2.4E-38 296.6 43.4 282 344-656 31-316 (340)
45 2pm9_A Protein WEB1, protein t 100.0 6.6E-36 2.3E-40 321.3 28.0 272 330-625 45-342 (416)
46 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-34 4E-39 306.4 37.0 246 348-620 5-274 (372)
47 3dm0_A Maltose-binding peripla 100.0 1.8E-34 6E-39 333.0 41.4 258 345-627 376-639 (694)
48 3dwl_C Actin-related protein 2 100.0 3.5E-36 1.2E-40 319.7 25.1 246 347-620 7-281 (377)
49 1sq9_A Antiviral protein SKI8; 100.0 3.9E-35 1.3E-39 313.5 32.5 269 329-621 35-396 (397)
50 3i2n_A WD repeat-containing pr 100.0 8.1E-35 2.8E-39 305.5 34.2 290 339-656 6-331 (357)
51 4ggc_A P55CDC, cell division c 100.0 1.3E-34 4.5E-39 299.1 35.1 299 293-622 8-317 (318)
52 1r5m_A SIR4-interacting protei 100.0 1.3E-34 4.5E-39 310.9 35.0 276 350-656 107-404 (425)
53 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-34 7.4E-39 337.3 39.2 255 345-627 7-266 (814)
54 3odt_A Protein DOA1; ubiquitin 100.0 1E-33 3.5E-38 291.4 39.0 249 340-625 7-260 (313)
55 3k26_A Polycomb protein EED; W 100.0 2.8E-35 9.6E-40 309.8 27.6 262 329-620 43-366 (366)
56 3dm0_A Maltose-binding peripla 100.0 4.3E-34 1.5E-38 329.7 39.3 262 329-620 404-693 (694)
57 3dw8_B Serine/threonine-protei 100.0 9.6E-35 3.3E-39 315.5 31.9 257 350-625 27-378 (447)
58 3i2n_A WD repeat-containing pr 100.0 9.1E-35 3.1E-39 305.1 30.1 266 329-622 43-355 (357)
59 1gxr_A ESG1, transducin-like e 100.0 2E-33 6.8E-38 292.2 39.8 261 329-618 71-335 (337)
60 3vl1_A 26S proteasome regulato 100.0 4E-34 1.4E-38 308.3 33.5 243 352-623 98-368 (420)
61 3ei3_B DNA damage-binding prot 100.0 7.2E-34 2.4E-38 303.0 35.1 254 344-628 66-347 (383)
62 2j04_B YDR362CP, TAU91; beta p 100.0 4.2E-35 1.4E-39 325.5 26.2 247 349-620 131-428 (524)
63 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-34 1.1E-38 303.0 31.8 268 329-623 29-364 (372)
64 1r5m_A SIR4-interacting protei 100.0 9E-34 3.1E-38 304.4 35.5 260 345-625 39-324 (425)
65 3gre_A Serine/threonine-protei 100.0 3.1E-34 1E-38 311.4 30.4 263 342-628 53-367 (437)
66 3k26_A Polycomb protein EED; W 100.0 2.9E-34 9.9E-39 302.1 29.2 272 347-656 14-345 (366)
67 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-34 4.7E-39 321.4 27.7 277 327-621 180-518 (524)
68 3odt_A Protein DOA1; ubiquitin 100.0 6.3E-33 2.1E-37 285.5 38.0 262 329-625 38-301 (313)
69 4h5i_A Guanine nucleotide-exch 100.0 2.2E-33 7.4E-38 298.5 35.5 200 420-621 132-344 (365)
70 3zwl_B Eukaryotic translation 100.0 9.3E-33 3.2E-37 290.6 40.0 266 329-625 53-351 (369)
71 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4.2E-37 287.1 39.8 265 329-623 60-340 (340)
72 3vl1_A 26S proteasome regulato 100.0 3.1E-34 1.1E-38 309.1 28.4 241 354-623 59-325 (420)
73 4a11_B DNA excision repair pro 100.0 6.4E-33 2.2E-37 296.3 37.3 265 346-626 38-371 (408)
74 3ei3_B DNA damage-binding prot 100.0 1.3E-33 4.3E-38 301.0 31.0 261 329-620 95-382 (383)
75 1yfq_A Cell cycle arrest prote 100.0 1.9E-33 6.5E-38 293.8 31.6 249 348-626 8-288 (342)
76 2xyi_A Probable histone-bindin 100.0 3.3E-33 1.1E-37 303.6 34.5 264 340-621 117-411 (430)
77 2pm9_A Protein WEB1, protein t 100.0 3.7E-34 1.3E-38 307.6 25.9 249 352-626 13-300 (416)
78 3v7d_B Cell division control p 100.0 2.7E-32 9.2E-37 298.5 40.5 261 329-625 141-426 (464)
79 3v7d_B Cell division control p 100.0 1.9E-32 6.6E-37 299.6 38.7 258 334-626 104-387 (464)
80 3mmy_A MRNA export factor; mRN 100.0 3.8E-33 1.3E-37 293.5 30.4 255 340-621 28-347 (368)
81 3sfz_A APAF-1, apoptotic pepti 100.0 7E-33 2.4E-37 339.8 37.4 252 341-620 605-913 (1249)
82 3jro_A Fusion protein of prote 100.0 1.6E-33 5.6E-38 327.7 29.5 251 346-622 4-287 (753)
83 4e54_B DNA damage-binding prot 100.0 2.7E-33 9.2E-38 304.7 29.2 255 346-627 114-394 (435)
84 3dwl_C Actin-related protein 2 100.0 2.9E-34 1E-38 304.9 20.9 263 329-618 32-377 (377)
85 2pm7_B Protein transport prote 100.0 2.3E-32 7.7E-37 281.7 33.2 208 415-622 3-240 (297)
86 1pgu_A Actin interacting prote 100.0 3.5E-32 1.2E-36 307.4 36.4 251 349-627 16-290 (615)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-32 4.9E-37 295.3 31.2 247 353-623 36-302 (402)
88 4aez_A CDC20, WD repeat-contai 100.0 1.1E-31 3.6E-36 288.7 36.7 247 346-624 86-340 (401)
89 4e54_B DNA damage-binding prot 100.0 3.7E-33 1.3E-37 303.7 25.1 268 328-623 140-433 (435)
90 1p22_A F-BOX/WD-repeat protein 100.0 9.6E-32 3.3E-36 292.2 35.0 261 348-654 130-393 (435)
91 3iz6_a 40S ribosomal protein R 100.0 5.9E-32 2E-36 288.8 32.0 234 412-656 57-354 (380)
92 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-31 2.3E-35 286.2 40.8 258 329-627 138-398 (445)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-32 4.2E-37 295.9 26.0 272 329-623 56-345 (402)
94 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-31 7.3E-36 311.9 38.4 267 329-624 34-306 (814)
95 1p22_A F-BOX/WD-repeat protein 100.0 9.9E-32 3.4E-36 292.2 31.7 255 329-624 152-418 (435)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-31 5.7E-36 291.8 33.3 265 352-618 5-337 (450)
97 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-31 1.5E-35 323.7 40.1 267 329-624 636-1038(1249)
98 1pgu_A Actin interacting prote 100.0 7.1E-31 2.4E-35 296.6 38.4 273 329-625 38-333 (615)
99 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-30 5E-35 283.6 39.3 241 346-626 113-354 (445)
100 1yfq_A Cell cycle arrest prote 100.0 3.8E-31 1.3E-35 276.3 31.8 255 329-618 32-322 (342)
101 3bg1_A Protein SEC13 homolog; 100.0 4E-32 1.4E-36 282.6 23.5 207 415-621 7-248 (316)
102 2oaj_A Protein SNI1; WD40 repe 100.0 4.6E-31 1.6E-35 312.1 35.0 295 329-655 78-631 (902)
103 3gre_A Serine/threonine-protei 100.0 1.1E-31 3.9E-36 291.2 27.4 248 349-617 109-437 (437)
104 3dw8_B Serine/threonine-protei 100.0 4.4E-31 1.5E-35 286.7 29.7 287 329-619 49-445 (447)
105 4gga_A P55CDC, cell division c 100.0 4.8E-30 1.6E-34 277.6 37.2 257 354-656 108-374 (420)
106 3jrp_A Fusion protein of prote 100.0 1.5E-30 5E-35 275.1 31.7 209 414-622 4-242 (379)
107 3vu4_A KMHSV2; beta-propeller 100.0 6.5E-30 2.2E-34 270.5 32.4 237 346-622 14-273 (355)
108 3lrv_A PRE-mRNA-splicing facto 100.0 1E-30 3.5E-35 274.9 25.6 234 359-626 44-298 (343)
109 2xyi_A Probable histone-bindin 100.0 6.2E-30 2.1E-34 277.8 32.0 242 414-656 121-388 (430)
110 2oaj_A Protein SNI1; WD40 repe 100.0 7.8E-30 2.7E-34 301.6 35.2 243 344-618 10-310 (902)
111 4gq1_A NUP37; propeller, trans 100.0 5.7E-31 1.9E-35 282.6 22.6 246 349-618 87-387 (393)
112 3f3f_A Nucleoporin SEH1; struc 100.0 5.7E-30 1.9E-34 266.1 29.5 242 415-656 5-316 (351)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-29 6.7E-34 275.4 34.7 243 348-621 99-392 (450)
114 4ggc_A P55CDC, cell division c 100.0 9.7E-29 3.3E-33 255.0 37.6 257 354-656 28-294 (318)
115 2j04_A TAU60, YPL007P, hypothe 100.0 6.1E-30 2.1E-34 278.8 27.2 254 350-619 14-296 (588)
116 4a11_B DNA excision repair pro 100.0 2.2E-29 7.5E-34 268.8 28.4 243 413-656 35-344 (408)
117 3mmy_A MRNA export factor; mRN 100.0 7E-29 2.4E-33 260.8 30.2 229 412-656 30-325 (368)
118 4h5i_A Guanine nucleotide-exch 100.0 5.9E-29 2E-33 264.2 28.7 199 351-579 133-344 (365)
119 3jro_A Fusion protein of prote 100.0 1.1E-28 3.6E-33 287.2 28.7 208 415-622 3-240 (753)
120 2w18_A PALB2, fancn, partner a 100.0 1.6E-28 5.5E-33 252.2 25.3 264 327-618 60-355 (356)
121 1l0q_A Surface layer protein; 100.0 6.7E-27 2.3E-31 249.3 38.8 264 329-627 11-282 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-28 5.1E-33 258.3 25.0 263 329-620 57-333 (343)
123 4gq1_A NUP37; propeller, trans 100.0 6.2E-28 2.1E-32 258.9 27.7 223 419-656 87-369 (393)
124 2j04_A TAU60, YPL007P, hypothe 100.0 7.3E-28 2.5E-32 262.5 28.2 223 349-609 83-350 (588)
125 3bws_A Protein LP49; two-domai 100.0 5.7E-27 1.9E-31 253.5 35.1 258 344-627 115-397 (433)
126 3bws_A Protein LP49; two-domai 100.0 1.7E-26 6E-31 249.6 34.8 259 330-620 144-432 (433)
127 3vu4_A KMHSV2; beta-propeller 100.0 2.6E-26 9E-31 242.8 30.0 234 352-622 59-338 (355)
128 1l0q_A Surface layer protein; 99.9 6.8E-25 2.3E-29 233.8 35.8 231 364-627 3-240 (391)
129 2w18_A PALB2, fancn, partner a 99.9 2.8E-26 9.7E-31 235.6 23.3 224 344-576 103-355 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-25 6.9E-30 241.2 29.8 276 331-656 94-407 (415)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.2E-23 2.8E-27 220.7 31.9 236 330-601 159-409 (415)
132 1ri6_A Putative isomerase YBHE 99.9 1.7E-22 5.8E-27 210.2 31.5 265 329-620 14-308 (343)
133 1nir_A Nitrite reductase; hemo 99.9 4.1E-22 1.4E-26 222.5 34.8 263 329-624 158-462 (543)
134 2ojh_A Uncharacterized protein 99.9 5.6E-23 1.9E-27 208.4 24.5 250 329-611 21-293 (297)
135 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-22 5.5E-27 234.4 26.9 261 351-619 36-366 (741)
136 3vgz_A Uncharacterized protein 99.9 4.9E-21 1.7E-25 200.3 35.2 248 349-627 38-310 (353)
137 2ojh_A Uncharacterized protein 99.9 5.4E-22 1.8E-26 201.0 26.5 224 369-624 18-262 (297)
138 3u4y_A Uncharacterized protein 99.9 2.4E-21 8.3E-26 201.3 30.6 264 329-623 19-307 (331)
139 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-21 6.7E-26 211.0 28.0 254 352-620 37-333 (434)
140 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-21 4.1E-26 227.1 27.7 238 353-620 110-413 (741)
141 1nir_A Nitrite reductase; hemo 99.9 6.8E-21 2.3E-25 212.6 32.4 277 330-628 200-522 (543)
142 3hfq_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 197.8 31.5 254 340-619 28-316 (347)
143 1pby_B Quinohemoprotein amine 99.9 8.3E-21 2.8E-25 196.8 27.7 262 330-628 11-318 (337)
144 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-21 1.5E-25 221.5 28.1 264 330-621 37-394 (723)
145 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-20 4.5E-25 196.6 27.9 237 356-627 4-332 (349)
146 1ri6_A Putative isomerase YBHE 99.9 2.8E-20 9.5E-25 193.4 28.7 228 365-620 7-262 (343)
147 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-21 5E-26 225.6 20.7 234 353-617 18-341 (723)
148 3vgz_A Uncharacterized protein 99.9 1.9E-19 6.6E-24 188.2 34.9 248 331-611 70-335 (353)
149 3u4y_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 192.4 28.5 236 357-623 3-255 (331)
150 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-20 5.3E-25 216.5 28.4 239 352-622 82-393 (706)
151 1k32_A Tricorn protease; prote 99.9 1.2E-20 4.1E-25 227.3 27.7 246 352-621 245-503 (1045)
152 3scy_A Hypothetical bacterial 99.9 4.3E-19 1.5E-23 187.1 36.3 244 350-620 48-337 (361)
153 3o4h_A Acylamino-acid-releasin 99.9 7.3E-21 2.5E-25 214.4 23.2 230 353-618 23-274 (582)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 2.9E-21 9.8E-26 209.7 18.4 199 422-622 37-280 (434)
155 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-20 1.5E-24 212.8 27.3 274 330-622 101-437 (706)
156 1k32_A Tricorn protease; prote 99.9 5.6E-20 1.9E-24 221.5 27.9 243 345-622 197-463 (1045)
157 1pby_B Quinohemoprotein amine 99.8 1.4E-18 4.9E-23 179.9 26.1 230 364-627 2-276 (337)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-18 4E-23 184.5 25.0 242 352-621 40-342 (365)
159 1z68_A Fibroblast activation p 99.8 1.1E-19 3.8E-24 209.9 15.6 236 356-622 20-348 (719)
160 3hfq_A Uncharacterized protein 99.8 1.3E-17 4.4E-22 174.6 29.3 202 418-620 36-271 (347)
161 3o4h_A Acylamino-acid-releasin 99.8 2.1E-18 7.2E-23 194.2 22.1 246 331-620 45-315 (582)
162 3scy_A Hypothetical bacterial 99.8 7.5E-17 2.6E-21 169.8 31.6 198 420-619 48-290 (361)
163 3fvz_A Peptidyl-glycine alpha- 99.8 4.8E-17 1.6E-21 169.6 29.6 239 352-620 24-322 (329)
164 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.4E-21 162.2 32.2 242 352-621 30-281 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 5.4E-18 1.8E-22 196.6 22.7 239 353-623 18-356 (740)
166 3pe7_A Oligogalacturonate lyas 99.8 2.2E-17 7.7E-22 175.2 24.9 251 343-623 22-332 (388)
167 1z68_A Fibroblast activation p 99.8 1.5E-18 5.2E-23 200.3 17.1 258 329-620 35-391 (719)
168 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-16 4.9E-21 165.8 27.0 223 329-588 20-335 (349)
169 3azo_A Aminopeptidase; POP fam 99.7 1.6E-16 5.3E-21 181.6 24.6 242 348-619 20-322 (662)
170 3azo_A Aminopeptidase; POP fam 99.7 3.5E-16 1.2E-20 178.7 26.6 202 420-623 128-372 (662)
171 2xdw_A Prolyl endopeptidase; a 99.7 7.8E-16 2.7E-20 177.6 28.4 240 353-622 126-416 (710)
172 3e5z_A Putative gluconolactona 99.7 2E-15 6.8E-20 154.4 28.3 237 347-620 23-286 (296)
173 2gop_A Trilobed protease; beta 99.7 1.1E-15 3.8E-20 159.6 26.8 223 352-619 59-330 (347)
174 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-15 6.7E-20 159.6 28.1 201 420-622 38-294 (365)
175 3c5m_A Oligogalacturonate lyas 99.7 9.7E-17 3.3E-21 170.3 17.9 237 354-623 38-332 (396)
176 3pe7_A Oligogalacturonate lyas 99.7 3.3E-16 1.1E-20 166.1 21.4 237 353-620 82-382 (388)
177 1rwi_B Serine/threonine-protei 99.7 2.4E-15 8.3E-20 151.1 26.2 240 353-622 25-266 (270)
178 2gop_A Trilobed protease; beta 99.7 3.7E-15 1.3E-19 155.6 26.6 220 353-621 16-292 (347)
179 2oiz_A Aromatic amine dehydrog 99.7 6E-15 2.1E-19 155.9 27.6 263 330-626 31-342 (361)
180 2dg1_A DRP35, lactonase; beta 99.7 7E-14 2.4E-18 145.2 34.3 238 343-611 36-301 (333)
181 3c5m_A Oligogalacturonate lyas 99.7 1.4E-15 4.7E-20 161.4 19.6 245 355-618 84-380 (396)
182 2dg1_A DRP35, lactonase; beta 99.7 1.2E-14 4.2E-19 150.9 26.4 235 352-619 6-262 (333)
183 4a5s_A Dipeptidyl peptidase 4 99.7 2.1E-15 7.1E-20 174.9 21.5 197 422-622 17-296 (740)
184 2bkl_A Prolyl endopeptidase; m 99.6 2.5E-15 8.6E-20 172.9 19.8 240 352-623 121-400 (695)
185 3fvz_A Peptidyl-glycine alpha- 99.6 5.2E-14 1.8E-18 146.5 27.6 205 421-627 23-284 (329)
186 3no2_A Uncharacterized protein 99.6 8.1E-14 2.8E-18 141.4 27.9 234 362-629 4-261 (276)
187 2z2n_A Virginiamycin B lyase; 99.6 1E-12 3.5E-17 133.3 34.3 241 346-619 9-254 (299)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.5E-13 1.9E-17 136.8 29.2 245 348-620 14-299 (314)
189 1q7f_A NHL, brain tumor CG1071 99.6 6.6E-13 2.2E-17 134.7 28.3 197 419-619 27-237 (286)
190 2z2n_A Virginiamycin B lyase; 99.6 4.5E-12 1.5E-16 128.5 34.5 255 331-621 37-296 (299)
191 2xdw_A Prolyl endopeptidase; a 99.6 3.2E-13 1.1E-17 155.7 28.5 204 419-624 122-372 (710)
192 1yr2_A Prolyl oligopeptidase; 99.6 1.3E-13 4.3E-18 159.9 24.4 239 353-623 164-444 (741)
193 3dsm_A Uncharacterized protein 99.6 8.6E-13 2.9E-17 137.3 28.1 239 354-628 46-309 (328)
194 3e5z_A Putative gluconolactona 99.6 4.9E-13 1.7E-17 136.5 25.2 205 413-624 19-249 (296)
195 2bkl_A Prolyl endopeptidase; m 99.5 6.3E-13 2.1E-17 152.9 25.5 195 419-619 118-348 (695)
196 3hrp_A Uncharacterized protein 99.5 6.4E-12 2.2E-16 134.9 30.8 233 353-618 132-408 (409)
197 2qc5_A Streptogramin B lactona 99.5 6.6E-11 2.3E-15 119.9 36.5 239 349-619 17-259 (300)
198 2oiz_A Aromatic amine dehydrog 99.5 2.4E-12 8.2E-17 135.9 26.3 218 352-602 108-360 (361)
199 1qks_A Cytochrome CD1 nitrite 99.5 1.7E-11 5.7E-16 136.7 34.1 252 348-627 193-545 (567)
200 3no2_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 132.5 21.9 191 432-628 4-203 (276)
201 1xip_A Nucleoporin NUP159; bet 99.5 5.5E-13 1.9E-17 140.7 18.7 172 423-608 39-232 (388)
202 3g4e_A Regucalcin; six bladed 99.5 1.8E-11 6.2E-16 125.2 29.6 225 353-609 14-261 (297)
203 1xip_A Nucleoporin NUP159; bet 99.5 9E-13 3.1E-17 139.1 19.3 182 353-565 39-231 (388)
204 2qc5_A Streptogramin B lactona 99.5 8.2E-11 2.8E-15 119.2 33.1 235 350-618 60-298 (300)
205 1rwi_B Serine/threonine-protei 99.5 8.9E-12 3.1E-16 124.8 24.5 199 423-622 25-224 (270)
206 3dsm_A Uncharacterized protein 99.5 4E-11 1.4E-15 124.6 29.0 195 422-623 44-256 (328)
207 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.1E-16 143.2 27.1 196 420-619 161-392 (741)
208 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-10 3.6E-15 121.3 30.6 222 353-610 50-292 (326)
209 3dr2_A Exported gluconolactona 99.4 3.6E-11 1.2E-15 123.4 26.4 230 347-613 40-300 (305)
210 1qks_A Cytochrome CD1 nitrite 99.4 2.5E-10 8.4E-15 127.3 34.6 229 361-620 165-421 (567)
211 2mad_H Methylamine dehydrogena 99.4 3.3E-10 1.1E-14 119.9 33.4 243 356-626 70-356 (373)
212 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-11 4.1E-16 142.1 23.9 238 352-623 129-408 (693)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3E-10 1E-14 116.2 27.3 202 418-623 14-259 (314)
214 3sjl_D Methylamine dehydrogena 99.3 2.1E-10 7.1E-15 120.6 25.2 249 356-630 82-373 (386)
215 2qe8_A Uncharacterized protein 99.3 3.3E-10 1.1E-14 118.3 24.3 243 352-616 17-317 (343)
216 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.9E-14 109.9 29.1 202 420-626 11-235 (297)
217 3hrp_A Uncharacterized protein 99.3 5E-10 1.7E-14 120.1 25.2 198 422-623 131-357 (409)
218 3c75_H MADH, methylamine dehyd 99.2 1.4E-09 4.8E-14 116.2 26.0 201 426-627 122-409 (426)
219 2ghs_A AGR_C_1268P; regucalcin 99.2 1.4E-08 4.8E-13 105.1 30.3 193 423-623 50-262 (326)
220 2hz6_A Endoplasmic reticulum t 99.2 4.2E-12 1.4E-16 134.4 2.7 188 432-628 8-200 (369)
221 2hz6_A Endoplasmic reticulum t 99.2 1.1E-11 3.8E-16 131.1 5.6 204 362-603 8-217 (369)
222 3iuj_A Prolyl endopeptidase; h 99.2 1.4E-09 4.7E-14 124.9 23.0 197 420-621 127-360 (693)
223 2mad_H Methylamine dehydrogena 99.2 6.4E-08 2.2E-12 102.2 33.6 196 426-627 70-314 (373)
224 3dr2_A Exported gluconolactona 99.1 7.8E-09 2.7E-13 105.9 23.2 198 414-619 37-266 (305)
225 1mda_H Methylamine dehydrogena 99.1 6.3E-09 2.2E-13 109.3 20.9 198 426-628 69-354 (368)
226 2qe8_A Uncharacterized protein 99.1 4.4E-09 1.5E-13 109.8 19.4 200 422-622 17-280 (343)
227 2ece_A 462AA long hypothetical 99.1 4.1E-08 1.4E-12 104.0 26.0 226 358-608 88-399 (462)
228 3sjl_D Methylamine dehydrogena 99.0 4.4E-08 1.5E-12 102.9 25.5 235 360-628 41-328 (386)
229 1yiq_A Quinohemoprotein alcoho 99.0 2.5E-08 8.6E-13 114.0 24.4 187 442-629 182-514 (689)
230 1kb0_A Quinohemoprotein alcoho 99.0 1.9E-08 6.5E-13 114.8 22.7 187 442-629 189-516 (677)
231 1npe_A Nidogen, entactin; glyc 98.9 1.9E-06 6.4E-11 86.0 31.7 203 422-627 36-245 (267)
232 3c75_H MADH, methylamine dehyd 98.9 1E-07 3.5E-12 101.8 23.0 208 356-585 122-409 (426)
233 2fp8_A Strictosidine synthase; 98.9 3.7E-07 1.3E-11 94.0 26.5 263 345-621 12-314 (322)
234 1npe_A Nidogen, entactin; glyc 98.9 1.9E-06 6.6E-11 86.0 30.3 220 353-602 37-263 (267)
235 3hxj_A Pyrrolo-quinoline quino 98.9 1.2E-07 4.3E-12 97.2 22.0 219 363-621 107-325 (330)
236 2iwa_A Glutamine cyclotransfer 98.9 4.5E-07 1.5E-11 90.3 24.5 195 423-622 22-239 (266)
237 1mda_H Methylamine dehydrogena 98.9 1.2E-07 4E-12 99.6 20.1 87 511-599 269-366 (368)
238 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.6E-06 5.4E-11 91.1 28.4 189 432-628 102-304 (376)
239 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.2E-06 7.7E-11 90.0 29.4 227 362-628 102-345 (376)
240 1kb0_A Quinohemoprotein alcoho 98.8 4E-07 1.4E-11 103.8 23.2 195 425-620 246-567 (677)
241 2p4o_A Hypothetical protein; p 98.8 1E-05 3.5E-10 82.5 31.3 227 351-611 31-279 (306)
242 3nol_A Glutamine cyclotransfer 98.8 1.5E-06 5E-11 85.6 23.4 182 423-610 44-245 (262)
243 1yiq_A Quinohemoprotein alcoho 98.8 6.8E-07 2.3E-11 102.1 23.9 180 426-606 239-534 (689)
244 1fwx_A Nitrous oxide reductase 98.8 1.3E-07 4.6E-12 103.4 17.0 187 431-620 99-361 (595)
245 3hxj_A Pyrrolo-quinoline quino 98.8 1.8E-07 6.1E-12 96.1 17.3 183 433-626 107-289 (330)
246 1fwx_A Nitrous oxide reductase 98.7 6.6E-07 2.3E-11 98.0 20.4 232 361-622 99-433 (595)
247 2ece_A 462AA long hypothetical 98.6 4.4E-06 1.5E-10 88.5 24.2 193 428-621 88-353 (462)
248 3mbr_X Glutamine cyclotransfer 98.6 8.8E-06 3E-10 79.4 24.4 185 419-609 16-223 (243)
249 3nok_A Glutaminyl cyclase; bet 98.6 6E-06 2.1E-10 81.3 22.7 179 422-608 55-253 (268)
250 2iwa_A Glutamine cyclotransfer 98.6 1.8E-05 6.2E-10 78.6 25.9 194 354-579 23-238 (266)
251 3v64_C Agrin; beta propeller, 98.6 9.4E-05 3.2E-09 77.0 31.2 204 421-625 72-280 (349)
252 1kv9_A Type II quinohemoprotei 98.6 4.6E-06 1.6E-10 94.9 22.9 187 442-629 177-497 (668)
253 3v65_B Low-density lipoprotein 98.5 0.00013 4.5E-09 77.0 31.2 204 421-625 115-323 (386)
254 4a2l_A BT_4663, two-component 98.5 0.00017 5.8E-09 83.8 34.6 244 351-622 214-482 (795)
255 4a2l_A BT_4663, two-component 98.5 0.00013 4.3E-09 84.8 33.2 239 352-622 310-573 (795)
256 2xe4_A Oligopeptidase B; hydro 98.5 1E-05 3.4E-10 93.5 23.4 239 353-622 175-460 (751)
257 3qqz_A Putative uncharacterize 98.5 8.8E-05 3E-09 73.2 26.5 199 416-617 21-250 (255)
258 1ijq_A LDL receptor, low-densi 98.5 0.00064 2.2E-08 69.5 33.9 201 421-624 29-242 (316)
259 3nol_A Glutamine cyclotransfer 98.4 4.1E-05 1.4E-09 75.4 23.3 187 348-568 37-245 (262)
260 2ad6_A Methanol dehydrogenase 98.4 1.7E-05 5.8E-10 88.4 23.2 195 434-629 161-503 (571)
261 3tc9_A Hypothetical hydrolase; 98.4 6.2E-05 2.1E-09 80.8 26.5 234 353-619 138-429 (430)
262 1w6s_A Methanol dehydrogenase 98.4 3.1E-05 1E-09 86.6 23.5 188 441-629 180-512 (599)
263 2fp8_A Strictosidine synthase; 98.4 6E-05 2.1E-09 77.2 23.9 193 423-619 20-268 (322)
264 2xe4_A Oligopeptidase B; hydro 98.4 9.1E-06 3.1E-10 93.9 18.8 192 423-618 175-398 (751)
265 4hw6_A Hypothetical protein, I 98.3 0.00018 6.1E-09 77.2 27.2 235 353-619 140-432 (433)
266 3v64_C Agrin; beta propeller, 98.3 0.00027 9.1E-09 73.5 27.7 210 348-586 69-283 (349)
267 3p5b_L Low density lipoprotein 98.3 0.0011 3.7E-08 70.3 32.7 206 419-625 109-325 (400)
268 3qqz_A Putative uncharacterize 98.3 0.00055 1.9E-08 67.5 28.1 197 349-575 24-250 (255)
269 1k3i_A Galactose oxidase precu 98.3 1.5E-05 5.3E-10 90.5 18.1 242 356-622 190-499 (656)
270 1flg_A Protein (quinoprotein e 98.3 0.00017 5.7E-09 80.5 26.0 160 469-629 251-525 (582)
271 3nok_A Glutaminyl cyclase; bet 98.3 0.00011 3.9E-09 72.2 21.5 180 354-567 57-254 (268)
272 1kv9_A Type II quinohemoprotei 98.3 4.3E-05 1.5E-09 86.9 21.5 153 433-585 117-340 (668)
273 3sov_A LRP-6, low-density lipo 98.3 0.0008 2.7E-08 68.9 29.1 203 422-625 35-243 (318)
274 3v65_B Low-density lipoprotein 98.2 0.00038 1.3E-08 73.5 27.0 221 348-597 112-337 (386)
275 3p5b_L Low density lipoprotein 98.2 0.0023 8E-08 67.7 32.7 226 347-597 107-339 (400)
276 3mbr_X Glutamine cyclotransfer 98.2 0.0005 1.7E-08 67.0 24.9 181 353-567 22-223 (243)
277 3v9f_A Two-component system se 98.2 0.00055 1.9E-08 79.3 29.0 245 351-622 312-570 (781)
278 2p4o_A Hypothetical protein; p 98.2 0.0006 2E-08 69.2 26.0 193 422-619 32-241 (306)
279 1w6s_A Methanol dehydrogenase 98.1 0.00045 1.6E-08 77.1 26.0 148 436-586 124-350 (599)
280 2ad6_A Methanol dehydrogenase 98.1 0.00018 6.3E-09 80.0 22.7 178 427-606 240-523 (571)
281 3sov_A LRP-6, low-density lipo 98.1 0.0012 3.9E-08 67.7 27.0 207 353-587 36-247 (318)
282 1ijq_A LDL receptor, low-densi 98.1 0.0042 1.4E-07 63.3 31.0 213 348-586 26-246 (316)
283 2xbg_A YCF48-like protein; pho 98.1 0.0063 2.2E-07 62.3 32.3 236 350-622 34-280 (327)
284 3v9f_A Two-component system se 98.1 0.0013 4.6E-08 76.0 30.3 249 351-621 257-525 (781)
285 2xbg_A YCF48-like protein; pho 98.1 0.0027 9.3E-08 65.1 28.2 189 422-618 122-320 (327)
286 3kya_A Putative phosphatase; s 98.0 0.0016 5.5E-08 70.3 27.0 242 353-626 140-481 (496)
287 1k3i_A Galactose oxidase precu 98.0 7.6E-05 2.6E-09 84.7 16.4 227 355-609 246-530 (656)
288 1flg_A Protein (quinoprotein e 98.0 0.00051 1.7E-08 76.6 21.9 177 426-604 250-543 (582)
289 3amr_A 3-phytase; beta-propell 97.9 0.0022 7.5E-08 65.7 24.3 184 432-619 39-262 (355)
290 3m0c_C LDL receptor, low-densi 97.9 0.0086 3E-07 68.8 31.5 206 419-625 421-637 (791)
291 3tc9_A Hypothetical hydrolase; 97.9 0.00084 2.9E-08 71.9 21.7 153 423-577 138-300 (430)
292 2p9w_A MAL S 1 allergenic prot 97.9 0.0019 6.6E-08 65.6 22.5 195 425-620 16-265 (334)
293 4hw6_A Hypothetical protein, I 97.9 0.0013 4.3E-08 70.5 22.0 194 423-618 140-372 (433)
294 3m0c_C LDL receptor, low-densi 97.8 0.0081 2.8E-07 69.1 29.4 214 347-585 419-639 (791)
295 3amr_A 3-phytase; beta-propell 97.8 0.0062 2.1E-07 62.4 24.3 193 362-586 39-272 (355)
296 2ism_A Putative oxidoreductase 97.8 0.0064 2.2E-07 63.0 25.1 229 351-608 30-333 (352)
297 3a9g_A Putative uncharacterize 97.7 0.025 8.7E-07 58.5 28.2 230 350-608 27-330 (354)
298 1n7d_A LDL receptor, low-densi 97.6 0.00031 1.1E-08 80.1 13.7 205 422-627 406-621 (699)
299 4a0p_A LRP6, LRP-6, low-densit 97.6 0.055 1.9E-06 60.6 31.8 200 422-624 37-241 (628)
300 3s94_A LRP-6, low-density lipo 97.6 0.019 6.6E-07 64.2 27.2 203 421-624 39-247 (619)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.033 1.1E-06 56.5 26.0 205 347-578 8-265 (334)
302 3s94_A LRP-6, low-density lipo 97.5 0.019 6.4E-07 64.3 26.2 205 351-583 39-248 (619)
303 2g8s_A Glucose/sorbosone dehyd 97.5 0.032 1.1E-06 57.8 26.2 240 352-618 18-350 (353)
304 1n7d_A LDL receptor, low-densi 97.5 0.00035 1.2E-08 79.7 11.5 222 351-597 405-633 (699)
305 2vpj_A Kelch-like protein 12; 97.5 0.0056 1.9E-07 61.5 19.3 183 432-622 62-280 (301)
306 3sre_A PON1, serum paraoxonase 97.4 0.027 9.3E-07 58.1 23.2 207 352-586 50-308 (355)
307 4a0p_A LRP6, LRP-6, low-densit 97.3 0.23 8E-06 55.4 31.4 208 352-586 340-557 (628)
308 2xn4_A Kelch-like protein 2; s 97.3 0.014 4.9E-07 58.6 19.7 183 432-622 61-278 (302)
309 3kya_A Putative phosphatase; s 97.3 0.025 8.4E-07 61.1 22.0 194 423-617 140-407 (496)
310 3ii7_A Kelch-like protein 7; p 97.2 0.027 9.1E-07 56.7 20.8 185 432-623 55-275 (306)
311 3das_A Putative oxidoreductase 97.2 0.25 8.5E-06 50.7 31.3 239 346-608 26-326 (347)
312 1cru_A Protein (soluble quinop 97.2 0.28 9.5E-06 52.5 29.3 112 351-482 26-162 (454)
313 2xzh_A Clathrin heavy chain 1; 97.2 0.24 8.1E-06 49.9 30.7 234 357-623 72-335 (365)
314 3sre_A PON1, serum paraoxonase 97.2 0.056 1.9E-06 55.8 22.6 184 423-610 51-287 (355)
315 1bpo_A Protein (clathrin); cla 97.1 0.41 1.4E-05 50.1 30.8 235 356-623 70-334 (494)
316 3ott_A Two-component system se 97.0 0.55 1.9E-05 53.6 31.4 232 351-621 21-261 (758)
317 4asc_A Kelch repeat and BTB do 97.0 0.053 1.8E-06 54.8 19.9 187 431-623 44-280 (315)
318 2ism_A Putative oxidoreductase 96.8 0.22 7.7E-06 51.2 23.8 192 422-621 31-298 (352)
319 3pbp_A Nucleoporin NUP82; beta 96.8 0.093 3.2E-06 54.8 20.0 141 431-574 30-208 (452)
320 1zgk_A Kelch-like ECH-associat 96.7 0.044 1.5E-06 55.2 17.1 183 432-622 70-289 (308)
321 1tl2_A L10, protein (tachylect 96.6 0.12 4.1E-06 49.1 17.5 177 433-620 4-208 (236)
322 2vpj_A Kelch-like protein 12; 96.6 0.058 2E-06 53.9 16.8 175 443-623 31-234 (301)
323 3s25_A Hypothetical 7-bladed b 96.6 0.24 8.1E-06 49.9 21.1 176 427-621 58-256 (302)
324 3pbp_A Nucleoporin NUP82; beta 96.5 0.29 9.8E-06 51.2 21.5 131 485-617 41-209 (452)
325 3a9g_A Putative uncharacterize 96.5 0.61 2.1E-05 48.0 24.3 198 421-621 28-297 (354)
326 2woz_A Kelch repeat and BTB do 96.5 0.18 6.2E-06 50.8 19.8 188 430-623 54-290 (318)
327 3ei3_A DNA damage-binding prot 96.4 2.6 8.9E-05 50.5 32.0 241 355-624 330-595 (1158)
328 3ei3_A DNA damage-binding prot 96.3 2.8 9.4E-05 50.2 31.3 174 444-621 808-1000(1158)
329 2xn4_A Kelch-like protein 2; s 96.2 0.13 4.4E-06 51.4 16.5 173 443-623 30-232 (302)
330 3ii7_A Kelch-like protein 7; p 96.1 0.15 5.2E-06 51.0 16.5 181 435-622 14-227 (306)
331 2uvk_A YJHT; unknown function, 96.0 0.17 5.7E-06 52.0 16.7 141 485-628 168-350 (357)
332 3ott_A Two-component system se 95.8 3.5 0.00012 46.9 32.0 223 352-616 63-303 (758)
333 4asc_A Kelch repeat and BTB do 95.8 0.51 1.7E-05 47.3 19.2 143 432-580 98-279 (315)
334 1cru_A Protein (soluble quinop 95.8 0.69 2.3E-05 49.4 20.9 104 464-567 27-163 (454)
335 2be1_A Serine/threonine-protei 95.6 0.021 7.1E-07 58.5 7.8 189 434-625 11-236 (339)
336 1tl2_A L10, protein (tachylect 95.6 0.16 5.4E-06 48.3 13.1 141 422-571 41-203 (236)
337 2be1_A Serine/threonine-protei 95.6 0.19 6.6E-06 51.3 14.6 141 440-583 64-236 (339)
338 1xi4_A Clathrin heavy chain; a 95.6 0.42 1.4E-05 57.3 19.0 230 359-621 73-332 (1630)
339 1zgk_A Kelch-like ECH-associat 95.5 0.18 6.1E-06 50.6 14.4 184 432-623 24-243 (308)
340 2xzh_A Clathrin heavy chain 1; 95.4 2.5 8.7E-05 42.5 26.0 205 346-580 101-334 (365)
341 3das_A Putative oxidoreductase 95.4 0.97 3.3E-05 46.3 19.2 142 463-607 31-219 (347)
342 2woz_A Kelch repeat and BTB do 95.4 1.4 4.8E-05 44.0 20.5 144 432-581 109-290 (318)
343 2g8s_A Glucose/sorbosone dehyd 95.1 0.27 9.2E-06 50.6 14.4 140 465-606 19-214 (353)
344 3s25_A Hypothetical 7-bladed b 95.0 3.4 0.00011 41.3 24.9 136 428-577 110-254 (302)
345 3qhy_B Beta-lactamase inhibito 94.8 0.72 2.4E-05 45.8 16.0 185 423-622 64-248 (282)
346 1bpo_A Protein (clathrin); cla 94.7 4.9 0.00017 42.1 27.1 158 422-580 151-333 (494)
347 3sbq_A Nitrous-oxide reductase 94.6 1.7 5.8E-05 46.9 18.6 188 432-621 141-409 (638)
348 2zwa_A Leucine carboxyl methyl 94.5 2.4 8.2E-05 47.9 21.3 150 432-582 451-639 (695)
349 2wg3_C Hedgehog-interacting pr 94.2 6.8 0.00023 41.7 26.6 250 352-619 14-370 (463)
350 2zwa_A Leucine carboxyl methyl 93.9 1.4 4.9E-05 49.7 17.8 192 431-623 396-638 (695)
351 1xi4_A Clathrin heavy chain; a 93.1 1.2 4.3E-05 53.4 15.6 194 429-627 73-296 (1630)
352 2uvk_A YJHT; unknown function, 92.6 1 3.5E-05 45.9 12.8 142 432-576 19-224 (357)
353 1uuj_A Platelet-activating fac 91.0 0.23 7.8E-06 39.3 4.2 30 3-32 10-39 (88)
354 3qhy_B Beta-lactamase inhibito 90.4 2.9 9.8E-05 41.3 12.9 185 423-622 25-209 (282)
355 3sbq_A Nitrous-oxide reductase 87.7 2 6.8E-05 46.4 9.7 121 486-608 299-453 (638)
356 1suu_A DNA gyrase subunit A; t 85.9 30 0.001 34.4 21.9 186 431-620 6-231 (312)
357 4gq2_M Nucleoporin NUP120; bet 84.9 13 0.00044 43.5 15.8 39 506-544 236-274 (950)
358 2xtc_A F-box-like/WD repeat-co 82.8 1.4 4.8E-05 35.0 4.4 35 1-35 3-37 (90)
359 3b7f_A Glycosyl hydrolase, BNR 82.0 47 0.0016 33.8 20.8 173 434-611 23-254 (394)
360 2wg3_C Hedgehog-interacting pr 77.1 26 0.0009 37.1 13.6 107 505-611 13-160 (463)
361 3kci_A Probable E3 ubiquitin-p 74.7 78 0.0027 32.2 29.0 193 423-621 106-346 (389)
362 3b7f_A Glycosyl hydrolase, BNR 73.0 84 0.0029 31.8 24.5 182 421-607 54-296 (394)
363 1iap_A Guanine nucleotide exch 72.2 3.6 0.00012 37.8 4.4 43 74-125 21-63 (211)
364 4gq2_M Nucleoporin NUP120; bet 70.1 1.7E+02 0.0057 34.0 22.3 37 549-585 237-273 (950)
365 4hvt_A Ritya.17583.B, post-pro 70.0 1.4E+02 0.0049 33.3 23.2 174 443-619 216-429 (711)
366 3no0_A DNA gyrase subunit A; D 67.8 92 0.0031 30.2 22.1 197 422-620 24-246 (276)
367 3uc1_A DNA gyrase subunit A; D 66.6 1.1E+02 0.0037 30.5 24.1 145 432-577 108-278 (327)
368 3kci_A Probable E3 ubiquitin-p 65.6 1.2E+02 0.0041 30.8 25.4 192 423-620 54-293 (389)
369 3no0_A DNA gyrase subunit A; D 61.5 1.2E+02 0.0041 29.3 21.8 154 422-577 68-245 (276)
370 3mvd_K Regulator of chromosome 60.7 1.5E+02 0.0052 30.3 33.5 243 352-621 75-375 (423)
371 1suu_A DNA gyrase subunit A; t 60.7 1.3E+02 0.0046 29.6 28.0 235 361-618 6-281 (312)
372 1sqj_A OXG-RCBH, oligoxylogluc 58.9 2.4E+02 0.008 31.9 28.5 146 351-526 14-190 (789)
373 4fhn_B Nucleoporin NUP120; pro 58.0 31 0.0011 41.1 10.2 39 506-544 238-276 (1139)
374 3cx8_B RHO guanine nucleotide 57.8 4.8 0.00016 37.0 2.3 32 94-125 50-81 (203)
375 3ab3_B RHO guanine nucleotide 55.7 3 0.0001 39.2 0.6 33 94-126 86-118 (246)
376 4fhn_B Nucleoporin NUP120; pro 52.2 34 0.0012 40.8 9.2 37 549-585 239-275 (1139)
377 2d68_A FOP, FGFR1OP; alpha hel 52.0 14 0.00049 28.7 3.8 29 5-33 20-48 (82)
378 3q6k_A 43.2 kDa salivary prote 47.9 2.4E+02 0.0082 28.7 23.7 163 444-608 124-342 (381)
379 3zwu_A Alkaline phosphatase PH 45.7 71 0.0024 34.8 9.7 59 507-565 477-548 (592)
380 1zi0_A DNA gyrase subunit A; b 44.0 2.4E+02 0.0082 27.6 27.0 238 361-620 1-277 (307)
381 4a9v_A PHOX; hydrolase, beta-p 43.5 86 0.003 34.0 9.6 61 506-566 476-549 (592)
382 3zwu_A Alkaline phosphatase PH 42.6 67 0.0023 35.1 8.8 59 549-607 477-548 (592)
383 3q6k_A 43.2 kDa salivary prote 41.4 3E+02 0.01 28.0 19.7 134 486-620 124-306 (381)
384 3f7f_A Nucleoporin NUP120; nuc 40.6 36 0.0012 38.0 6.3 38 506-545 222-259 (729)
385 4hvt_A Ritya.17583.B, post-pro 39.1 4.4E+02 0.015 29.2 20.2 193 425-621 132-382 (711)
386 3uc1_A DNA gyrase subunit A; D 38.0 3.1E+02 0.011 27.1 22.1 197 422-620 42-279 (327)
387 3f7f_A Nucleoporin NUP120; nuc 30.7 64 0.0022 36.0 6.2 72 548-622 222-307 (729)
388 2cn3_A Xyloglucanase, beta-1,4 30.4 5.9E+02 0.02 28.1 26.5 28 352-379 23-51 (737)
389 3l6v_A GYRA, DNA gyrase subuni 30.3 4.4E+02 0.015 26.6 28.0 238 360-619 4-315 (370)
390 4a9v_A PHOX; hydrolase, beta-p 30.3 1.9E+02 0.0065 31.3 9.7 60 549-608 477-549 (592)
391 1sqj_A OXG-RCBH, oligoxylogluc 29.0 6.5E+02 0.022 28.1 22.4 146 421-568 14-190 (789)
392 3ff5_A PEX14P, peroxisomal bio 25.3 48 0.0016 23.4 2.6 13 11-23 34-46 (54)
393 3mez_B Mannose-specific lectin 24.5 2.8E+02 0.0096 22.4 9.7 60 517-578 24-84 (113)
394 1zi0_A DNA gyrase subunit A; b 24.4 4.9E+02 0.017 25.2 25.0 145 432-577 108-276 (307)
395 2eap_A Lymphocyte cytosolic pr 21.0 62 0.0021 25.4 2.7 18 9-26 26-43 (90)
396 1wp5_A Topoisomerase IV; broke 20.8 6E+02 0.021 24.9 26.4 144 433-577 106-276 (323)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-41 Score=368.40 Aligned_cols=268 Identities=29% Similarity=0.492 Sum_probs=247.9
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+ ......+.+|.+.|+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------~~~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------GDFERTLKGHTDSVQ 154 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------CCCCEEECCCSSCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------CcEEEEEeccCCcEE
Confidence 5678999999999999999999999999999999875 223456789999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
+++|+|++++|++|+.||+|++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||++++.++..+.+|.
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~ 234 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC--------------------CCEEEEE
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD--------------------GRYMASG 565 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~--------------------g~~L~s~ 565 (656)
..|.+++|+|++.+|++|+.|++|++||++++.+...+.+|...|.+++|+|+ |.+|++|
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999996 6799999
Q ss_pred ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 645 (656)
+.||.|++||+.++.++..+.+|...|++++|+|++.+|++|+.||+|++||+.++... ..+..+
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------------~~~~~h 379 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------------KTLNAH 379 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---------------EEEECC
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---------------EEEcCC
Confidence 99999999999999999999999999999999999999999999999999999776533 234456
Q ss_pred CCCeEEEEEcC
Q 006220 646 STPVYSLQVLR 656 (656)
Q Consensus 646 ~~pv~sv~Ftr 656 (656)
..+|.+++|++
T Consensus 380 ~~~v~~l~~~~ 390 (410)
T 1vyh_C 380 EHFVTSLDFHK 390 (410)
T ss_dssp SSCEEEEEECS
T ss_pred CCcEEEEEEcC
Confidence 66777777753
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-41 Score=348.65 Aligned_cols=256 Identities=23% Similarity=0.387 Sum_probs=234.2
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
..++.+|.+.|++++|+|++++|++|+.||.|+|||+.+ ......+.+|..+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----------------------------~~~~~~~~~~~~~ 57 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----------------------------QVEVRSIQVTETP 57 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSC
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------------------------CceeEEeeccCCc
Confidence 346889999999999999999999999999999999875 2355677889999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEec
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMA 502 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~ 502 (656)
|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||++++ .....+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4556788
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 006220 503 GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP--DGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 503 ~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~ 578 (656)
+|...|.+++|+| ++.+|++|+.|++|++||++++.....+. +|...+..+.|+| ++.+|++|+.||.|++||+++
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 9999999999999 67899999999999999999887665554 5667899999987 778999999999999999999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.....
T Consensus 218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 9999999999999999999999999999999999999999887755443
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.4e-41 Score=349.64 Aligned_cols=272 Identities=24% Similarity=0.383 Sum_probs=244.9
Q ss_pred EEEEeeCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 344 FYTFINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
+....+|.+.|+|++|+|+ +.+|++|+.|+.|+||++... .......+.+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~--------------------------~~~~~~~l~g 78 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE--------------------------RLDLQWSLEG 78 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECC
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC--------------------------Ceeeeeeecc
Confidence 3455689999999999975 679999999999999998641 1123446789
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
|...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+++++|+|++.+|++|+.||.+++|++++++...
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.+..|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|..+|.+++|+|++++|++|+.||.|++||++++
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++... .+..+..+|.+++|++
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---------------~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH---------------TFFDHQDQVWGVKYNG 300 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------EECCCSSCEEEEEECT
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE---------------EEcCCCCcEEEEEECC
Confidence 9999999999999999999999999999999999999998765443 3344556677777653
No 4
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=100.00 E-value=8.4e-44 Score=320.03 Aligned_cols=139 Identities=32% Similarity=0.584 Sum_probs=130.2
Q ss_pred cCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC
Q 006220 61 EDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLS 140 (656)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~ 140 (656)
++||+.|+++|.+|++||++|||+||+||++|||||||||||+||++| .++|++||++|+++|..+|+++|++|++|++
T Consensus 4 ~~dp~~y~~~y~~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~ 82 (148)
T 2j49_A 4 MNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS 82 (148)
T ss_dssp ---CTTHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred ccCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeEEEEcCCCCC
Q 006220 141 PSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERINFQVSPGQPS 200 (656)
Q Consensus 141 ~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~ 200 (656)
|+|+++|+++++||+|||+|+||++++++|++||+++++. +|++|||+||+|++++|.|+
T Consensus 83 p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~gg~~ll~Iin~~i~i~v~~~~p~ 145 (148)
T 2j49_A 83 IDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTA 145 (148)
T ss_dssp HHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGGTHHHHHHHHHHHEEEEEC-----
T ss_pred HHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcccHHHHHHHHHHheeEeeeCCCCC
Confidence 9999999999999999999999999999999999999988 99999999999999998775
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=100.00 E-value=1.6e-43 Score=323.76 Aligned_cols=151 Identities=28% Similarity=0.558 Sum_probs=144.6
Q ss_pred CCCchhhcccccccccccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 006220 44 ILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFRED 123 (656)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~ 123 (656)
+.+|+++++.+.++. +++||+.|+++|.+||+||++|||+||+||++|||||||||||+||++|+.++|+.||+||+++
T Consensus 5 ~~~e~~~~~~~~~~~-~~~dp~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~ 83 (156)
T 2nxp_A 5 VEDQPDVSAVLSAYN-QQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD 83 (156)
T ss_dssp ---CCCHHHHHGGGS-SCCCTTSHHHHHHHHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG
T ss_pred ccCCchHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 347889999998786 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 006220 124 HEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS 195 (656)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 195 (656)
|+..|+++|++|++|++|+|+++|++++.||+|||+|+||++++++|++||+++++.+|++|||+||+|+++
T Consensus 84 ~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~ 155 (156)
T 2nxp_A 84 QECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIF 155 (156)
T ss_dssp SCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHHHHheeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=344.39 Aligned_cols=263 Identities=18% Similarity=0.394 Sum_probs=245.7
Q ss_pred ccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+++|+...... ..+.+.+|...|.+++|++++.++++|+.|+.|++||+..
T Consensus 57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~------------------------- 111 (321)
T 3ow8_A 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN------------------------- 111 (321)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------
Confidence 45788887655443 3456788999999999999999999999999999999875
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
......+..|...+.+++|+|++++|++|+.||.|++|++.++.....+..|...|.+++|+|++.+|++|+.||.|
T Consensus 112 ---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 112 ---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp ---TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 23455677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.+++|+|+|.+|++|+.
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
||.|++||+.+++++..+.+|.+.|++++|+|++.+|++++.||+|++||+.
T Consensus 269 D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999973
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-39 Score=341.44 Aligned_cols=270 Identities=22% Similarity=0.377 Sum_probs=242.3
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
+..++.+|.+.|++++|+||+++|++|+.||.|+|||+.. ......+..|..
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~----------------------------~~~~~~~~~~~~ 98 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT----------------------------TNKVHAIPLRSS 98 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------CCcceEeecCCc
Confidence 4567889999999999999999999999999999999864 234456778999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.|.+++|+|++++|++|+.|+.|++|++.+.. ....+.+|...|.++.|++++. +++++.|++|++||+.+++++
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE
Confidence 99999999999999999999999999998653 4556789999999999998775 899999999999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
..+.+|...|.+++|+|+++++++|+.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.||.|++||+++
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 579 GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 579 ~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
++.+..+.. +...|.+++|+|+|++|++|+.||.|++||+.++... ..+..+..+|.+++|++
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---------------~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---------------GVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEECT
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe---------------eEeecCCCcEEEEEEcC
Confidence 988877653 3357999999999999999999999999999776533 34556777888888864
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-40 Score=356.15 Aligned_cols=262 Identities=28% Similarity=0.526 Sum_probs=242.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+...... ..++.+|.+.|++++|+|++++|++|+.||.|+|||+..
T Consensus 129 Dg~i~vwd~~~~~~-~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------------- 181 (410)
T 1vyh_C 129 DATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------------- 181 (410)
T ss_dssp SSCEEEEETTTCCC-CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred CCeEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence 45788887654432 346788999999999999999999999999999999864
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
......+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|+
T Consensus 182 --~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 --FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp --SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 234556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCC--------------------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHIN--------------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~--------------------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~ 548 (656)
+||+.+......+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67899999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.|++++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999963
No 9
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=100.00 E-value=3.5e-42 Score=306.94 Aligned_cols=134 Identities=31% Similarity=0.694 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChh
Q 006220 63 GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPS 142 (656)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (656)
-|+.|+++|.+|++||++|||+||+||++|||||||||||+||++|+.++|++||+||+++|+.+ +++|++|++|++|+
T Consensus 4 ~~~~y~~~y~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e 82 (138)
T 2j4b_A 4 MKDQMETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQ 82 (138)
T ss_dssp ---CHHHHHHHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHH
T ss_pred hHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEcCC
Q 006220 143 HLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVSPG 197 (656)
Q Consensus 143 ~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~ 197 (656)
|+++|+++++||+|||+|+||++++++|++||+++++.+|++|||+||+|++++|
T Consensus 83 ~l~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~~ll~Iin~~i~i~v~~g 137 (138)
T 2j4b_A 83 HIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVG 137 (138)
T ss_dssp HHHHCHHHHHHHHSCEEEEEEHHHHHHHHHHHHHTTCHHHHHHHHHHEEEEEECC
T ss_pred HHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHCCChHHHHHHHHheeeEeeCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=339.38 Aligned_cols=250 Identities=21% Similarity=0.250 Sum_probs=217.7
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
...+..+|++++|+|++ .|++|+.||.|+|||+...... ......+.+|.+.|++
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~------------------------~~~~~~~~~H~~~V~~ 132 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL------------------------IVSKFCKYEHDDIVST 132 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC------------------------EEEEEEEECCSSCEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce------------------------eEeeccccCCCCCEEE
Confidence 34567789999999985 6778999999999998753211 1223346689999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec--C
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA--G 503 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~ 503 (656)
++|+|++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+. .
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 212 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce
Confidence 9999999999999999999999999999999999999999999999987 578999999999999999999888775 4
Q ss_pred CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCee
Q 006220 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 504 ~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
|...+.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|++++|+|+| ++|++|+.||+|+|||+.++++
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 556799999998 46788999999999999999999999999999999999999998 5899999999999999998876
Q ss_pred eEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCC
Q 006220 582 VTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+ .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus 293 ~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 293 F-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred E-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 5 5679999999999999875 67899999999999997743
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-38 Score=335.83 Aligned_cols=271 Identities=25% Similarity=0.371 Sum_probs=241.4
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
...++.+|.+.|+|++|+|++++||+|+.||.|+|||..+ ......+..|..
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~----------------------------~~~~~~~~~~~~ 107 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT----------------------------TNKEHAVTMPCT 107 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------CCEEEEEECSSS
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCcceEEecCCC
Confidence 4557889999999999999999999999999999999764 123445667889
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCC------ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
.|.+++|+|++.+|++|+.|+.+++|++... .....+.+|...|.+++|+|++..|++|+.|++|++||+++++
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 9999999999999999999999999998643 3356677899999999999999999999999999999999999
Q ss_pred eeEEecCCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 497 PLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.+..+.+|...|.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|++++|+|++.+|++|+.||.|++|
T Consensus 188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw 267 (354)
T 2pbi_B 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267 (354)
T ss_dssp EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999987 56899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEE
Q 006220 575 DLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSL 652 (656)
Q Consensus 575 D~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv 652 (656)
|++.++.+..+..+ ...+.+++|+|++.+|++|+.||+|++||+.++... ..+..+..+|.++
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---------------~~l~~h~~~v~~l 332 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---------------SILFGHENRVSTL 332 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---------------EEECCCSSCEEEE
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---------------EEEECCCCcEEEE
Confidence 99999887776544 357899999999999999999999999999876533 3345677778888
Q ss_pred EEcC
Q 006220 653 QVLR 656 (656)
Q Consensus 653 ~Ftr 656 (656)
+|++
T Consensus 333 ~~sp 336 (354)
T 2pbi_B 333 RVSP 336 (354)
T ss_dssp EECT
T ss_pred EECC
Confidence 8864
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-38 Score=334.96 Aligned_cols=263 Identities=24% Similarity=0.384 Sum_probs=237.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+..... +..++..|...|.+++|+|++++||+|+.|+.|++|++....
T Consensus 76 Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~------------------------ 130 (340)
T 1got_B 76 DGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE------------------------ 130 (340)
T ss_dssp TTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS------------------------
T ss_pred CCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC------------------------
Confidence 4578888765443 345667788899999999999999999999999999987421
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
........+.+|.+.|.++.|++++. +++++.|++|++||+.++..+..+.+|...|.+++|+|++.+|++|+.||+|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 11234566789999999999998765 88999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~ 566 (656)
+||++++.++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+ ...|++++|+|+|++|++|+
T Consensus 210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999888777532 34799999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
.||.|++||+.+++.+..+.+|.+.|.+++|+|+|.+|++|+.||+|+|||
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999999999999999999999997
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=334.71 Aligned_cols=283 Identities=23% Similarity=0.413 Sum_probs=234.5
Q ss_pred eEEEEeeCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 343 SFYTFINTHN-GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 343 ~~~~~~~~~~-~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
+..++.+|.+ .|.+++|+|+|++||+|+.|+.|+||++..... ........+|.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-------------------------~~~~~~~~~h~ 61 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-------------------------ICKSVLSEGHQ 61 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-------------------------EEEEEECSSCS
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-------------------------eeeeeeccccC
Confidence 4556778877 899999999999999999999999999864110 01222346899
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc---
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--- 496 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--- 496 (656)
+.|.+++|+|++++|++|+.|++|++|+...+. ++..+.+|..+|.+++|+|++++|++|+.|++|++||++...
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 999999999999999999999999999998763 567888999999999999999999999999999999998764
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.+..+.+|...|.+++|+|++.+|++|+.|++|++||.+++. +...+.+|...|++++|+|+|++|++|+.||+|+||
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 456778999999999999999999999999999999998875 457788999999999999999999999999999999
Q ss_pred eCCC---------------CeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccc
Q 006220 575 DLAS---------------GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRS 638 (656)
Q Consensus 575 D~~~---------------~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 638 (656)
|... .+++..+.+ |...|++++|+|++..|++++.|+.|++|+.......... .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------~~~~~ 295 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP------TFSLT 295 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC------CEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee------eEEEE
Confidence 9632 134445555 8899999999999999999999999999998765321100 00001
Q ss_pred cccccCCCCCeEEEEEcC
Q 006220 639 LKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 639 l~~~p~~~~pv~sv~Ftr 656 (656)
......|..+|.+|+|++
T Consensus 296 ~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp EEETTSSSSCEEEEEECS
T ss_pred eeecccccCcEeEeEEeC
Confidence 122346677888888864
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-37 Score=322.08 Aligned_cols=255 Identities=25% Similarity=0.514 Sum_probs=231.0
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
..+++.+|.+.|++++|+|++++||+|+.||.|+||++.. ......+.+|..
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----------------------------~~~~~~~~~h~~ 66 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----------------------------GKFEKTISGHKL 66 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCCSS
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------cccchhhccCCC
Confidence 3567889999999999999999999999999999999864 234456778999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+..++.+++|+|++++|++++.||.|++||+.++++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 999999999999999999999999999999999999887764 4567899999999999999999999999999999999
Q ss_pred eEeeeCCCccEE---EEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 582 VTPLMGHTSCVW---TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 582 ~~~~~~h~~~V~---~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+..+.+|...+. .....+++.+|++|+.||.|++||+.+++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 999988875432 23334678999999999999999998876443
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-37 Score=322.82 Aligned_cols=256 Identities=28% Similarity=0.427 Sum_probs=229.8
Q ss_pred EEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
..++.+|.+.|++++|+|++ ++|++|+.|+.|++|++..... ........+.+|..
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-----------------------~~~~~~~~~~~h~~ 66 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-----------------------KFGVPVRSFKGHSH 66 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-----------------------EEEEEEEEEECCSS
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-----------------------cccccceEEeCCcc
Confidence 34678999999999999965 8999999999999999864111 01235567889999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||++. ..+..+.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~ 145 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL 145 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 5778888
Q ss_pred CCCCCeeEEEEcCC------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 503 GHLSDVDCVRWHIN------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 503 ~~~~~V~~v~~~p~------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
+|...|.+++|+|+ +..+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999985 448999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.+++++..+..+ ..|.+++|+|++.+|++++.+ .+++|++.......
T Consensus 226 ~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~ 272 (319)
T 3frx_A 226 AAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVD 272 (319)
T ss_dssp TTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEE
T ss_pred CCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeee
Confidence 999999888755 689999999999999988755 59999998755443
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.6e-38 Score=336.23 Aligned_cols=283 Identities=23% Similarity=0.399 Sum_probs=234.9
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC---CCCCcc------------c
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND---TTPRED------------I 404 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~---~~~~~~------------~ 404 (656)
...+..++.+|.+.|+|++|+|++++||+|+.||+|+|||+.+............... ..+... +
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456678899999999999999999999999999999999876443222111000000 000000 0
Q ss_pred cC------CCCCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe-----eCCCccEEEEEEe
Q 006220 405 IG------PNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY-----KGHNYPVWDVQFN 472 (656)
Q Consensus 405 ~~------~~~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~-----~~h~~~V~~l~~s 472 (656)
.. ..........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+ .+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 00 011122334577999999999999975 57999999999999999999988777 6799999999998
Q ss_pred c-CCCEEEEEECCCcEEEEECC-CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC--
Q 006220 473 P-QGHYFASSSHDRTARIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-- 548 (656)
Q Consensus 473 p-~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-- 548 (656)
+ ++.+|++|+.||+|++||++ ...++..+.+|...|.+++|+|++++|++|+.||+|++||++++.++..+..+..
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 88999999999999999998 5578889999999999999999999999999999999999999999988865432
Q ss_pred -----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee----eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 549 -----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL----MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 549 -----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+|++|+.||+|+||++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 4899999999999999999999999999999888777 5799999999999999999999999999999997
Q ss_pred CCC
Q 006220 620 TST 622 (656)
Q Consensus 620 ~~~ 622 (656)
...
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-37 Score=327.47 Aligned_cols=266 Identities=27% Similarity=0.369 Sum_probs=237.8
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+..... ....+..+...|.+++|+|+|.+||+|+.|+.|++|++......
T Consensus 85 Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------- 141 (354)
T 2pbi_B 85 DGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------- 141 (354)
T ss_dssp TSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC----------------------
T ss_pred CCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc----------------------
Confidence 4578888754433 34566677888999999999999999999999999998642110
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~ 486 (656)
........+.+|.+.|.+++|+|++..|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 01123455678999999999999999999999999999999999999999999999999999988 5789999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEE
Q 006220 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMAS 564 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s 564 (656)
|++||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||++++..+..+..+. ..+++++|+|+|++|++
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999998887776443 47899999999999999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999999999999996
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=328.66 Aligned_cols=272 Identities=22% Similarity=0.267 Sum_probs=220.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
+...|.+++|||||++|++|+ |+++++||.......... .............|..+|++++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----------------AAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----------------GTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----------------ccCCcceeeeeeccCCCEEEEEE
Confidence 456799999999999999886 778888874310000000 00001122233456788999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEE----eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVC----YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~----~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|.
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9985 688999999999999998876544 34899999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee
Q 006220 506 SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 506 ~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
..|.+++|+|++ .+|++|+.|++|++||++++++...+. .|...+.+++|+|+ +++|++|+.||.|++||++++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 999999999987 478999999999999999999888764 45567999999995 57899999999999999999999
Q ss_pred eEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 582 VTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
+..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.. .+..|..+|.+|+|++
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----------------~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----------------RSQAHRDFVRDATWSP 309 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----------------EECCCSSCEEEEEECS
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----------------EEcCCCCCEEEEEEeC
Confidence 99999999999999999997 58999999999999999876432 1234556666666653
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-37 Score=331.28 Aligned_cols=269 Identities=26% Similarity=0.472 Sum_probs=222.2
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
....+|.+.|+|++|||||++||+|+ ++.++||++................ .............+...|
T Consensus 58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~v 126 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN----------KDPENLNTSSSPSSDLYI 126 (393)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBE
T ss_pred EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc----------cccccccccccCCCceeE
Confidence 34557999999999999999999985 7899999987643322111000000 000000111122344569
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||+++++....+. +
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~ 205 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-I 205 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887776 5
Q ss_pred CCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 505 LSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 505 ~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~-------~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
...+.+++|+| ++++|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 57899999999 8999999999999999999999888776 579999999999999999999999999999999
Q ss_pred CC------------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 577 AS------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 577 ~~------------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.+ +.+...+.+|...|.+++|++++.+|++|+.||.|++||+.++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 75 34566778999999999999999999999999999999998876543
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-37 Score=320.19 Aligned_cols=249 Identities=23% Similarity=0.391 Sum_probs=217.1
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.+.|++++|+|+|++||+|+.|+.|+||++... .......+.+|.++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------~~~~~~~l~gH~~~V~ 57 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------CBCCCEEECCCSSCEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------CcEEEEEEccccCCeE
Confidence 45678899999999999999999999999999998631 1224466889999999
Q ss_pred EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 006220 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (656)
Q Consensus 426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~--~ 497 (656)
+++|+++ +++|++|+.||+|++||+.++. .+..+.+|..+|.+++|+|+ +.+|++|+.|++|++||++... .
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 9999864 8899999999999999998774 56677889999999999997 8999999999999999998753 2
Q ss_pred eEEecCCCCCeeEEEEcCC-------------CCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCC-
Q 006220 498 LRIMAGHLSDVDCVRWHIN-------------CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDG- 559 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~-------------~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g- 559 (656)
...+.+|...|.+++|+|+ +++|++|+.|++|++||++++. ....+.+|...|.+++|+|++
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence 4667799999999999997 5799999999999999998776 667888999999999999985
Q ss_pred --CEEEEEECCCcEEEEeCCCCe---eeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 560 --RYMASGDEDGTIMMWDLASGR---CVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 560 --~~L~s~~~dg~I~iwD~~~~~---~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.+|++|+.||+|+|||+.++. ....+ ..|...|++++|+|++++|++++.||+|++|+...
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 899999999999999997643 11223 46788999999999999999999999999999864
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=322.41 Aligned_cols=250 Identities=24% Similarity=0.434 Sum_probs=212.7
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe-ec-C
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-QG-H 420 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-h 420 (656)
+..++.+|.+.|++++|+|+ +||+|+.|+.|+||++.... ......+ .+ |
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~--------------------------~~~~~~~~~~~h 57 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD--------------------------FTLIDVLDETAH 57 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC--------------------------CEEEEEECTTCC
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC--------------------------eEEEEEEecCCc
Confidence 35567889999999999998 99999999999999986411 1122233 34 9
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL-------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
.++|.+++|+|++++|++|+.|++|++|++.. ...+..+.+|..+|.+++|+|++.+|++|+.|++|++||++
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999999853 34567788999999999999999999999999999999995
Q ss_pred C----CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcCC--CCEEEEE
Q 006220 494 R----IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPD--GRYMASG 565 (656)
Q Consensus 494 ~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~--g~~L~s~ 565 (656)
. .+++..+.+|...|.+++|+|++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 3 2467788899999999999999999999999999999999876 678899999999999999998 7799999
Q ss_pred ECCCcEEEEeCCCC--------eeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 566 DEDGTIMMWDLASG--------RCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 566 ~~dg~I~iwD~~~~--------~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+.|++|++||+..+ .+...+.+ |...|++++|++++ +|++++.||.|++||+.++
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 99999999998764 44555555 89999999999765 8999999999999998765
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-37 Score=351.24 Aligned_cols=267 Identities=22% Similarity=0.320 Sum_probs=234.3
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
.+.+++|+...+. ...++.+|...|+|++|||||++||+|+.||.|+|||+....
T Consensus 38 ~~~v~l~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~------------------------ 92 (611)
T 1nr0_A 38 GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT------------------------ 92 (611)
T ss_dssp TTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT------------------------
T ss_pred CCEEEEecCCCcc-cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc------------------------
Confidence 3577888765433 234577899999999999999999999999999999986311
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEEC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSH 483 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~ 483 (656)
......+.+|.++|.+++|+|+++.|++++.+ ++|++|| ++.....+.+|...|++++|+|++. .|++|+.
T Consensus 93 --~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~ 168 (611)
T 1nr0_A 93 --HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168 (611)
T ss_dssp --CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred --ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeC
Confidence 12334677899999999999999999998875 4788887 4666777899999999999999986 6999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-------cCCCCeEEEEEc
Q 006220 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-------GHRSMILSLAMS 556 (656)
Q Consensus 484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-------~h~~~i~~l~~s 556 (656)
|++|++||....+....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+. +|.+.|.+++|+
T Consensus 169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 9999999999988999999999999999999999999999999999999999999998884 799999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEe-------------------------------------------eeCCCccEE
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTP-------------------------------------------LMGHTSCVW 593 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~-------------------------------------------~~~h~~~V~ 593 (656)
|+|++|++++.|++|++||+.+++++.. +.+|...|+
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 9999999999999999999988765543 347889999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 594 ~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+++|+|+|++|++++.||+|++||+.++...
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 9999999999999999999999999887643
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-36 Score=317.97 Aligned_cols=287 Identities=22% Similarity=0.338 Sum_probs=231.9
Q ss_pred eEEEEeeCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220 343 SFYTFINTHNGLNCASI-----SQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~f-----s~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (656)
+..++.+|.+.|+|++| ++ |+++||+|+.|++|+||++...... .........
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~---------------------~~~~~~~~~ 71 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN---------------------GYFGIPHKA 71 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS---------------------SBSEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc---------------------cccccccch
Confidence 34567889999999999 77 9999999999999999998742110 001234567
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||+...
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~- 150 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE- 150 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred eeEEec---CCCCCeeEEEEcCCC----------CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 497 PLRIMA---GHLSDVDCVRWHINC----------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 497 ~~~~~~---~~~~~V~~v~~~p~~----------~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
...... +|...|.+++|+|++ .++++|+.||+|++|| .++.....+.+|...|.+++|+|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence 333333 788899999999987 7999999999999999 56777888999999999999999999999
Q ss_pred EEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccc
Q 006220 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTL 642 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~ 642 (656)
+|+.||.|++||+... .....+ .+...|.+++|+|++.+++++ .|+.|++|++.+.......... ..........
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~ 305 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIE--AEPITKAEGQ 305 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECC--CCSGGGBTTB
T ss_pred EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEee--cCcchhhhhh
Confidence 9999999999999543 344333 355679999999999887655 5888999999876543211100 0011111222
Q ss_pred cCCCCCeEEEEEcC
Q 006220 643 PTKSTPVYSLQVLR 656 (656)
Q Consensus 643 p~~~~pv~sv~Ftr 656 (656)
..+..+|.+++|++
T Consensus 306 ~~~~~~v~~~~~sp 319 (343)
T 2xzm_R 306 KGKNPQCTSLAWNA 319 (343)
T ss_dssp CCSCCCEEEEEECS
T ss_pred cCCCCceEEEEECC
Confidence 35666788888864
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-37 Score=330.75 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=215.9
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
...+|..+|++++|+|++.+| +|+.||.|+|||+....... .......+|.+.|+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~------------------------~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLL------------------------VNKFAKYEHDDIVK 143 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------C------------------------CCCEEECCCSSCEE
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeE------------------------EEeeccCCCCCCEE
Confidence 456788899999999998755 56689999999987522111 11233558999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEec--
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMA-- 502 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~-- 502 (656)
+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||+|++||++++++...+.
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 999999999999999999999999999999999999999999999999874 78999999999999999988776554
Q ss_pred CCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe
Q 006220 503 GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 503 ~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~ 580 (656)
.|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 56678999999997 5689999999999999999999999999999999999999987 589999999999999999998
Q ss_pred eeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCce
Q 006220 581 CVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 581 ~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
++..+ +|.+.|++++|+| ++.+|++|+.||+|++|++.+..+.
T Consensus 304 ~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 304 VFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 87654 8999999999998 7999999999999999999775443
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=324.65 Aligned_cols=271 Identities=21% Similarity=0.294 Sum_probs=225.9
Q ss_pred ccceecCCCCCCcee-EEE-EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 329 RNRVHLSSAALPSVS-FYT-FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~-~~~-~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
...+++|+....... ... ..+|...|++++|+|++++||+|+.|+.|+||++...
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----------------------- 93 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----------------------- 93 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----------------------
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-----------------------
Confidence 457888876544322 222 2468889999999999999999999999999997641
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
.......+.+|.++|.+++|+|++++|++|+.|++|++||+.++. ++..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ---~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 94 ---DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp ----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred ---CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 123456788999999999999999999999999999999998764 35667889999999999999999999999
Q ss_pred CCcEEEEECCCCc--eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------eeEEEEec-
Q 006220 484 DRTARIWSMDRIQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG---------------ECVRIFIG- 545 (656)
Q Consensus 484 Dg~i~lwd~~~~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~---------------~~~~~~~~- 545 (656)
|++|++||.+... +...+.+|...|.+++|+|++++|++|+.|++|++||.... .++..+.+
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 9999999998765 45678899999999999999999999999999999996321 34445555
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEE
Q 006220 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKL 615 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~i 615 (656)
|...|.+++|+|++..|++++.|+.|++|+...+. ......+|...|++++|+|++ .+|++|+.||+|++
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 88899999999999999999999999999987542 112235899999999999987 59999999999999
Q ss_pred EeCCCCCcee
Q 006220 616 WDVTTSTKVL 625 (656)
Q Consensus 616 Wd~~~~~~~~ 625 (656)
|++.+.+...
T Consensus 331 W~~~~~~~~~ 340 (345)
T 3fm0_A 331 WKYQRPEGLH 340 (345)
T ss_dssp EEECC-----
T ss_pred EEecCCCCcc
Confidence 9998876543
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-37 Score=330.57 Aligned_cols=252 Identities=21% Similarity=0.285 Sum_probs=211.1
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 348 INTHNGLNCASISQDGSLVAGGFS------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
..|...|+|++|||||++||+|+. |+.|++|+....... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~------------------------~~~~~~~~~~~ 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN------------------------ESLCTAGVQTE 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C------------------------GGGCSEEEECS
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc------------------------eeEecccCCCC
Confidence 357888999999999999999997 677888886542111 12233456789
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE----EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
..|++++|+|++. +++++.||+|++||+.+++... ...+|..+|.+++|+|++.+|++|+.||+|++||+++++.
T Consensus 95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999875 5567889999999998876542 3457999999999999999999999999999999999999
Q ss_pred eEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCcEEE
Q 006220 498 LRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPD-GRYMASGDEDGTIMM 573 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~L~s~~~dg~I~i 573 (656)
+..+.+|...|.+++|+|++. ++++++.||+|++||+++++++..+. .|...+++++|+|+ +.+|++|+.|+.|++
T Consensus 174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 999999999999999999875 78999999999999999988776543 46678999999997 568999999999999
Q ss_pred EeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCce
Q 006220 574 WDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++..
T Consensus 254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 9999999999999999999999999987 68999999999999999876543
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-36 Score=314.44 Aligned_cols=262 Identities=25% Similarity=0.403 Sum_probs=231.8
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... .+..++..|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 34 dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-------------------------- 86 (304)
T 2ynn_A 34 SGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-------------------------- 86 (304)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence 457889976543 34567778889999999999999999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~ 486 (656)
......+.+|.+.|.+++|+|++++|++|+.||+|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++
T Consensus 87 --~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 87 --GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred --CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 23556688999999999999999999999999999999998874 4567889999999999999 6789999999999
Q ss_pred EEEEECCCCceeEEec-CCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
|++||+++..+...+. +|...+.++.|+| ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|+
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 9999998877665554 5668899999987 778999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTT 620 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~ 620 (656)
+|+.||.|++||+.+++++..+..|...+++++|+|++. ++++|+.| .+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 999999999999999999999999999999999999875 57777655 577888765
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-36 Score=314.71 Aligned_cols=261 Identities=23% Similarity=0.411 Sum_probs=230.8
Q ss_pred cceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 330 NRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 330 ~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..+++|+... ...+..++.+|...|++++|+|++++|++|+.|+.|+|||+.+
T Consensus 40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----------------------- 96 (319)
T 3frx_A 40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------------------- 96 (319)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------
Confidence 4566775421 1334567889999999999999999999999999999999875
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC------CCEEE
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ------GHYFA 479 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~ 479 (656)
......+.+|.+.|.+++|+|++.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|. +..++
T Consensus 97 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 97 -----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp -----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred -----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 34566788999999999999999999999999999999997 5677888899999999999985 45899
Q ss_pred EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
+++.|++|++||+++.+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+ ..|.+++|+|++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~ 249 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR 249 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988754 689999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeeeEeeeC--------CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 560 RYMASGDEDGTIMMWDLASGRCVTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~--------h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.+|++++.+ .+++|++..+..+..+.. |...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999998765 599999988877766542 4567999999999999999999999999998653
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=319.13 Aligned_cols=270 Identities=21% Similarity=0.380 Sum_probs=215.8
Q ss_pred ccceecCCCCCCce-eEEEE-ee-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 329 RNRVHLSSAALPSV-SFYTF-IN-THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 329 ~~~v~l~~~~~ps~-~~~~~-~~-~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
...+++|+...... ....+ .. |.+.|++++|+|++++||+|+.|+.|+||++......
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~------------------- 93 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR------------------- 93 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------------------
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-------------------
Confidence 45778887654332 23333 23 8889999999999999999999999999998631100
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
.........+.+|.+.|++++|+|++++|++|+.|++|++||+... .++..+.+|...|.+++|+|++.+|++|
T Consensus 94 --~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 94 --TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred --cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence 0112345678899999999999999999999999999999999432 4567788999999999999999999999
Q ss_pred ECCCcEEEEECCCC--ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--------eeEEEEec-CCC
Q 006220 482 SHDRTARIWSMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--------ECVRIFIG-HRS 548 (656)
Q Consensus 482 s~Dg~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~--------~~~~~~~~-h~~ 548 (656)
+.|++|++||..+. +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++ .+...+.+ |..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 99999999998766 678889999999999999998 779999999999999998764 44555555 899
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eeEe-eeCCCc-cEEEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP-LMGHTS-CVWTLAYSC--EGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~~~~-~~~h~~-~V~~l~~s~--~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.|.+++|++++ +|++++.||.|++||..++. .+.. ..+|.. .|.+++|+| ++++|++|+.||+|++||+..
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999765 89999999999999998774 3333 357886 899999999 789999999999999999865
No 30
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.1e-37 Score=331.83 Aligned_cols=301 Identities=25% Similarity=0.422 Sum_probs=261.3
Q ss_pred cccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCcee-EEEEeeCCCCeEEEEEcCCCCEEEEEeCC
Q 006220 294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSD 372 (656)
Q Consensus 294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~dg~~La~g~~d 372 (656)
.+..+.++.++|.+++++|+..++|+..+.+...+.+.|++|+....... .+.+.+|...|+|++|+|||++||+|+.|
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D 168 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence 34456788899999999999999998877666678899999998766543 44556777889999999999999999999
Q ss_pred CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220 373 SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (656)
Q Consensus 373 g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~ 452 (656)
|.|+|||+.. ......+.+|...|.+++|+ +..|++|+.|+.+++||...
T Consensus 169 g~v~iWd~~~----------------------------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 169 AEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp SCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS
T ss_pred CeEEEEEcCC----------------------------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc
Confidence 9999999875 34566788999999998886 67999999999999999886
Q ss_pred Cc-eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecCCCCCeeEEEEcCCC-CEEEE--EE
Q 006220 453 NA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINC-NYIAT--GS 524 (656)
Q Consensus 453 ~~-~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~-~~l~t--gs 524 (656)
.. .+..+.+|...+..+.|+|++.++++++.|+.+++|+...++ .+.....|...|.+++|+|.+ ..+++ |+
T Consensus 219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 54 457788999999999999999999999999999999998764 456777899999999999965 45555 34
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220 525 SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (656)
Q Consensus 525 ~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~ 602 (656)
.|++|++||+.++.++..+..| ..+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+|.+.|++++|+|+|+
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 7999999999999999988765 5689999999999988865 789999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCCcee
Q 006220 603 LLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 603 ~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+|+||+.||+|+|||+.......
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC-
T ss_pred EEEEEecCCeEEEEECCCCCccc
Confidence 99999999999999998765443
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-36 Score=324.79 Aligned_cols=239 Identities=30% Similarity=0.619 Sum_probs=218.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.|++++|+|||++||+|+.||.|+|||+.. ......+.+|...|++++|+|+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~p~ 176 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN----------------------------RKIVMILQGHEQDIYSLDYFPS 176 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------TEEEEEECCCSSCEEEEEECTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------CcEEEEEccCCCCEEEEEEcCC
Confidence 499999999999999999999999999874 2355668899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEe-------cCC
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIM-------AGH 504 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-------~~~ 504 (656)
+++|++|+.|++|++||+.++.+...+. +...+.+++|+| ++.+|++|+.||+|++||++++..+..+ .+|
T Consensus 177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255 (393)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence 9999999999999999999998877776 566799999999 8999999999999999999998887766 579
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------------CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
...|.+++|+|++++|++|+.|++|++||+++ +.+...+.+|...|.+++|+|++.+|++|+.||.|+
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999975 345667889999999999999999999999999999
Q ss_pred EEeCCCCeeeEeeeCCCccEEEEEEcC------CCCEEEEEECCCcEEEEeCCC
Q 006220 573 MWDLASGRCVTPLMGHTSCVWTLAYSC------EGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~~~V~~l~~s~------~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+||+.+++++..+.+|.+.|.+++|++ ++.+|++|+.||+|+||++..
T Consensus 336 iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999999986 688999999999999999864
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-36 Score=315.72 Aligned_cols=261 Identities=25% Similarity=0.400 Sum_probs=219.9
Q ss_pred ccceecCCCCCC------ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 329 RNRVHLSSAALP------SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 329 ~~~v~l~~~~~p------s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
...+++|+.... ..+..++.+|...|++++|+|++.+|++|+.|+.|+|||+..
T Consensus 48 D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-------------------- 107 (343)
T 2xzm_R 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-------------------- 107 (343)
T ss_dssp TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--------------------
T ss_pred CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------------------
Confidence 356788865432 244567788999999999999999999999999999999875
Q ss_pred cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCC----
Q 006220 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG---- 475 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~---- 475 (656)
......+.+|.+.|++++|+|++++|++|+.|++|++||+.. ....... +|...|.+++|+|++
T Consensus 108 --------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 108 --------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp --------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred --------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecccccccc
Confidence 234566789999999999999999999999999999999983 3433333 688899999999987
Q ss_pred ------CEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCC
Q 006220 476 ------HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRS 548 (656)
Q Consensus 476 ------~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~ 548 (656)
.+|++++.||+|++||. .......+.+|...|.+++|+|++++|++|+.||.|++||+.+ ......+ .+..
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~ 256 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGS 256 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSS
T ss_pred ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCC
Confidence 79999999999999994 4567778889999999999999999999999999999999954 4444444 3556
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE--eee-----------CCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT--PLM-----------GHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~--~~~-----------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
.|.+++|+|++.+++++ .|+.|++||+.+++... .+. +|...|.+++|+|+|++|++|+.||+|++
T Consensus 257 ~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence 79999999999888765 57889999998776543 333 68889999999999999999999999999
Q ss_pred EeCCCC
Q 006220 616 WDVTTS 621 (656)
Q Consensus 616 Wd~~~~ 621 (656)
|++.++
T Consensus 336 w~~~~g 341 (343)
T 2xzm_R 336 FSFETS 341 (343)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 998653
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-35 Score=306.94 Aligned_cols=262 Identities=29% Similarity=0.526 Sum_probs=233.7
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+..... ....+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 44 dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------------------------- 96 (312)
T 4ery_A 44 DKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-------------------------- 96 (312)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--------------------------
Confidence 4567788754433 3446678889999999999999999999999999999874
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.+|++|+.||.|+
T Consensus 97 --~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 --GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 234566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEE--EEE-cCCCCEEEE
Q 006220 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILS--LAM-SPDGRYMAS 564 (656)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~--l~~-sp~g~~L~s 564 (656)
+||+++++.+..+. .+...+.+++|+|++++|++++.||.|++||+++++++..+.+|...+.+ ..+ .+++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999988877664 56678999999999999999999999999999999999999988765433 233 467899999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT 619 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~ 619 (656)
|+.||.|++||+.+++.+..+.+|...|.+++|+|++.++++++ .|++|++|+..
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999999999999997 69999999974
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-35 Score=333.07 Aligned_cols=277 Identities=33% Similarity=0.556 Sum_probs=246.4
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.. ......+.+|...|.+++|+|++++|++|+.||.|++|++..
T Consensus 283 d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------------------------- 334 (577)
T 2ymu_A 283 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------- 334 (577)
T ss_dssp TSCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------------
T ss_pred CCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------
Confidence 3467777643 334556778899999999999999999999999999999763
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.....+.+|...|.+++|+|++++|++|+.||+|++|+. ++..+..+.+|..+|.+++|+|++.+|++++.|+.|+
T Consensus 335 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 335 ---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp ---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ---CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 234556789999999999999999999999999999996 4778888999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+||. +++.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|...|++++|+|+|++|++++.|
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 9995 56778888999999999999999999999999999999995 678888999999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCC
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTP 648 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~p 648 (656)
+.|++||. +++++..+.+|...|++++|+|++++|++++.||.|++||.. ++ .+..+..|..+
T Consensus 489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---------------~~~~~~~h~~~ 551 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------------LLQTLTGHSSS 551 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---------------EEEEEECCSSC
T ss_pred CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC---------------EEEEEcCCCCC
Confidence 99999995 788999999999999999999999999999999999999963 22 23455677888
Q ss_pred eEEEEEcC
Q 006220 649 VYSLQVLR 656 (656)
Q Consensus 649 v~sv~Ftr 656 (656)
|.+|+|++
T Consensus 552 v~~~~fs~ 559 (577)
T 2ymu_A 552 VWGVAFSP 559 (577)
T ss_dssp EEEEEECT
T ss_pred EEEEEEcC
Confidence 88888874
No 35
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.1e-37 Score=320.30 Aligned_cols=249 Identities=22% Similarity=0.386 Sum_probs=212.1
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.+.|++++|+|+|++||+|+.|+.|+|||+... .......+.+|.++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--------------------------~~~~~~~l~gH~~~V~ 61 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG--------------------------GQILIADLRGHEGPVW 61 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT--------------------------EEEEEEEEECCSSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC--------------------------CcEEEEEEcCCCccEE
Confidence 45688999999999999999999999999999998641 1123466889999999
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCce--
Q 006220 426 SASFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP-- 497 (656)
Q Consensus 426 ~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~-- 497 (656)
+++|++ ++++|++|+.|++|++||+.++. ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++....
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 999986 48899999999999999998764 56677889999999999997 78999999999999999987532
Q ss_pred -eEEecCCCCCeeEEEEcCC-----------------CCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEc
Q 006220 498 -LRIMAGHLSDVDCVRWHIN-----------------CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 498 -~~~~~~~~~~V~~v~~~p~-----------------~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~s 556 (656)
...+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+ .++..+.+|...|.+++|+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 3455689999999999997 478999999999999999765 4677788999999999999
Q ss_pred CCC----CEEEEEECCCcEEEEeCCCC---e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 557 PDG----RYMASGDEDGTIMMWDLASG---R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 557 p~g----~~L~s~~~dg~I~iwD~~~~---~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|++ .+|++|+.||+|++||+.+. . ....+..|...|++++|+|++++|++++.||+|++|+...
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 986 89999999999999998762 1 2234567889999999999999999999999999999864
No 36
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-35 Score=309.34 Aligned_cols=255 Identities=22% Similarity=0.379 Sum_probs=225.7
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+.+|.+.|+|++|+|++++||+|+.||.|+||++.... ........+.+|.++|++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~v~~ 62 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT------------------------SNWELSDSWRAHDSSIVA 62 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS------------------------CCEEEEEEEECCSSCEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC------------------------CcceecceeccCCCcEEE
Confidence 46788999999999999999999999999999987521 112355667899999999
Q ss_pred EEEcc--CCCEEEEEeCCCeEEEEeccCC---------ceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECC
Q 006220 427 ASFSP--LGDFILSSSADTTIRLWSTKLN---------ANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 427 l~~sp--d~~~L~s~s~Dg~I~lwd~~~~---------~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~ 493 (656)
++|+| ++.+|++|+.||+|++||+.++ ..+..+.+|..+|.+++|+|+ +.+|++++.||.|++||++
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 99999 6999999999999999999877 457778899999999999999 9999999999999999998
Q ss_pred CCceeEEec-------------CCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCee--EEEEecCCCCeEEEEE
Q 006220 494 RIQPLRIMA-------------GHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAM 555 (656)
Q Consensus 494 ~~~~~~~~~-------------~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~--~~~~~~h~~~i~~l~~ 555 (656)
+.+.+..+. +|...+.+++|+|+ +.++++++.++.+.+|+...+.. +..+.+|...|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 876543332 67889999999997 99999999999999998887765 6778899999999999
Q ss_pred cCCC----CEEEEEECCCcEEEEeCCCC----------------------------------------------eeeEee
Q 006220 556 SPDG----RYMASGDEDGTIMMWDLASG----------------------------------------------RCVTPL 585 (656)
Q Consensus 556 sp~g----~~L~s~~~dg~I~iwD~~~~----------------------------------------------~~~~~~ 585 (656)
+|++ ++|++|+.||.|++||++.+ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 89999999999999999875 677778
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.+|...|++++|+|++++|++|+.||.|++|++.++....
T Consensus 303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 8999999999999999999999999999999999876543
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-35 Score=333.09 Aligned_cols=254 Identities=35% Similarity=0.612 Sum_probs=232.0
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+... .....+..|...|.+++|+|++++|++|+.||.|++|+...
T Consensus 324 d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------------------- 375 (577)
T 2ymu_A 324 DKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------- 375 (577)
T ss_dssp TSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------------
T ss_pred CCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------------------------
Confidence 34677887543 34456778889999999999999999999999999999642
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.....+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+.+|..+|++++|+|++.+|++++.|++|+
T Consensus 376 ---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 376 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 345667889999999999999999999999999999996 4778888999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+||. +++.+..+.+|...|.+++|+|++++|++++.|++|++|| .++++++.+.+|...|++++|+|+|++|++++.|
T Consensus 452 ~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence 9996 4577888899999999999999999999999999999999 4788999999999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|.|++||. +++++..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 530 g~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999996 7889999999999999999999999999999999999997
No 38
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.2e-36 Score=338.63 Aligned_cols=247 Identities=21% Similarity=0.309 Sum_probs=220.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
+.+.+.+++|+|||++||+++ ++.|+||++.. ......+.+|.+.|++++|
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~----------------------------~~~~~~~~~h~~~v~~~~~ 67 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------------LTDTEIYTEHSHQTTVAKT 67 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------------SSCCEEECCCSSCEEEEEE
T ss_pred ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC----------------------------cccCeEecCCCCceEEEEE
Confidence 356789999999999999997 56999999864 2244567899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEecC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~~ 503 (656)
+|+|++|++|+.||+|+|||+.++. ....+.+|..+|.+++|+|++.+|++++.+ ++|++|| .+.....+.+
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~g 145 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTG 145 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCC
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecC
Confidence 9999999999999999999997544 345678899999999999999999999865 3677777 4556777889
Q ss_pred CCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 504 HLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
|...|.+++|+|++. .|++|+.|++|++||..++++...+.+|...|.+++|+|+|++|++|+.||.|++||+.+++++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 999999999999987 5999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eeee-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 583 TPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 583 ~~~~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
..+. +|.+.|++++|+|++++|++++.|++|++||+.+++.....
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 8874 79999999999999999999999999999999987765443
No 39
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=304.33 Aligned_cols=255 Identities=20% Similarity=0.349 Sum_probs=231.3
Q ss_pred ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
....+.+.+|.+.|+|++|+|++++|++|+.||.|+|||+.. ......+.+|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~~~~~~~h 73 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------GERLGTLDGH 73 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------chhhhhhhhc
Confidence 455667899999999999999999999999999999999875 2355667889
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI 495 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~ 495 (656)
.+.|.+++|+|++++|++++.||+|++||+.+++.+..+. +..+|.+++|+|++.++++++.+ |.|++||+...
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 9999999999999999999999999999999999988888 88899999999999999999999 99999998755
Q ss_pred c-----------eeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCE
Q 006220 496 Q-----------PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 496 ~-----------~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
. ++..+..|.. .+.+++|+|++++|++|+.||.|++||+++ +..+..+..|...|.+++|+|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 3 4455556666 899999999999999999999999999999 7889999999999999999999999
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCCcee
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTTSTKVL 625 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--------------~I~iWd~~~~~~~~ 625 (656)
|++++.||.|++||+.+++.+..+. +...+.+++|+|++.++++++.++ .|++||+.+++...
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 9999999999999999999988887 778899999999999999999998 79999988776543
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-34 Score=297.84 Aligned_cols=256 Identities=20% Similarity=0.346 Sum_probs=227.6
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.....+|.+.|++++|+|++++|++|+ ||.|++|++....... ........+|...
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~~ 99 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------PVSQLDCLNRDNY 99 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------CSEEEECSCTTSB
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------------------eeecccccCCCCc
Confidence 445568899999999999999999998 9999999987522110 0111222378999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
|.+++|+|++++|++++.||.|++||+.++. ....+..|...|.+++|+|++.++++++.||.|++||+++++.+..+
T Consensus 100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 9999999999999999999999999999877 56677889999999999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.||.|++||+.+++.
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 9999999999999999999999999999999999999888775 778899999999999999999999999999988765
Q ss_pred eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
. .+..|...|.+++|+|++++|++++.||.|++||+.+++...
T Consensus 259 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp E-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred E-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 4 667899999999999999999999999999999999877653
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=316.49 Aligned_cols=298 Identities=23% Similarity=0.352 Sum_probs=247.5
Q ss_pred cCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 006220 298 ANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKV 377 (656)
Q Consensus 298 ~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~I 377 (656)
+..+..+|....+++...+.+.....+.......+++|+.............|.+.|++++|+|++++|++|+.||.|++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 33444445555555555555554433344556789999887766655555557889999999999999999999999999
Q ss_pred EEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCcee
Q 006220 378 WDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANL 456 (656)
Q Consensus 378 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~ 456 (656)
||+.. ......+.+|.+.|.+++|+ +.+|++|+.||.|++||+. ....+
T Consensus 161 wd~~~----------------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 161 YDVES----------------------------QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EETTT----------------------------CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EECcC----------------------------CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCccee
Confidence 99875 23455677899999999995 6799999999999999998 45667
Q ss_pred EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEE--CCCcEEEEe
Q 006220 457 VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGS--SDKTVRLWD 533 (656)
Q Consensus 457 ~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs--~dg~V~iwd 533 (656)
..+.+|...|.+++|+|++.+|++|+.||.|++||+++.+++..+.+|...|.+++|+|++ ..+++|+ .|+.|++||
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 8889999999999999999999999999999999999999999999999999999999976 4556654 799999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
+++++++..+. +...|.+++|+|+|++|++++ .||.|++||+.++.... .+.+|.+.|.+++|+|++.+|++++.
T Consensus 291 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 291 AATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred CCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 99999998886 667899999999999999954 89999999999876554 46689999999999999999999999
Q ss_pred CCcEEEEeCCCCCceee
Q 006220 610 DCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 610 Dg~I~iWd~~~~~~~~~ 626 (656)
||.|++|++.+++....
T Consensus 370 dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 370 DENLKFWRVYDGDHVKR 386 (401)
T ss_dssp TSEEEEEECCC------
T ss_pred CCcEEEEECCCCccccc
Confidence 99999999998776543
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-35 Score=314.42 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=229.5
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
...+.+|.+.|+|++|+| ++|++|+.||.|+||++...... ........+.+|..+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------------NPKDKSYSHFVHKSG 64 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------------CGGGGEEEEECCTTC
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc----------------------cCCCcceEEecCCCc
Confidence 345668999999999999 89999999999999998752210 012245667799999
Q ss_pred EEEEEEccC----C---CEEEEEeCCCeEEEEeccCCce-----eEEeeCC-----CccEEEEEEe----cCCCE-EEEE
Q 006220 424 VYSASFSPL----G---DFILSSSADTTIRLWSTKLNAN-----LVCYKGH-----NYPVWDVQFN----PQGHY-FASS 481 (656)
Q Consensus 424 V~~l~~spd----~---~~L~s~s~Dg~I~lwd~~~~~~-----~~~~~~h-----~~~V~~l~~s----p~~~~-l~sg 481 (656)
|++++|+|+ + ++|++++.||.|++|++.++.. +..+..| ...|++++|+ |++.+ |++|
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 999999999 9 9999999999999999998887 8888888 5899999999 99999 9999
Q ss_pred ECCCcEEEEECCC------CceeE-----Ee-------cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220 482 SHDRTARIWSMDR------IQPLR-----IM-------AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (656)
Q Consensus 482 s~Dg~i~lwd~~~------~~~~~-----~~-------~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~ 543 (656)
+.||.|++||+.+ .+.+. .+ ..|...|.+++|+|++ ++++|+.||.|++||+++++.+..+
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 9999999999988 66665 66 4588999999999999 9999999999999999999999999
Q ss_pred ec---C---CCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeEeeeC-------------CCccEEEEEEcCCC
Q 006220 544 IG---H---RSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMG-------------HTSCVWTLAYSCEG 601 (656)
Q Consensus 544 ~~---h---~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~~~~~-------------h~~~V~~l~~s~~~ 601 (656)
.. | ...|.+++|+|++++|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 99 9 9999999999999999999999 9999999999999999988 99999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 602 SLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 602 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
++|++++.||.|++||+.+++......
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999999999999887665543
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=311.19 Aligned_cols=251 Identities=22% Similarity=0.384 Sum_probs=222.8
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.+.|+|++|+|++++||+|+.||.|+||++... .......+.+|.++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------~~~~~~~~~~h~~~v~ 59 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 59 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------cceeeeEecCCCCcEE
Confidence 46789999999999999999999999999999998631 1345567889999999
Q ss_pred EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCc--e
Q 006220 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQ--P 497 (656)
Q Consensus 426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~--~ 497 (656)
+++|+++ +++|++|+.||+|++||+.++. .+..+.+|..+|.+++|+|+ +.+|++++.||.|++||++... .
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence 9999987 8999999999999999999887 67778889999999999999 9999999999999999998773 4
Q ss_pred eEEecCCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCC--
Q 006220 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPD-- 558 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~-- 558 (656)
...+.+|...|.+++|+| ++.+|++|+.||.|++||++++. .+..+.+|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 456678999999999999 69999999999999999998764 45677889999999999999
Q ss_pred -CCEEEEEECCCcEEEEeCCCCe-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 559 -g~~L~s~~~dg~I~iwD~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++|++++.||.|++||+.++. .+.....|...|++++|+|++++|++++.||.|++|++....
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 8999999999999999998864 222233588999999999999999999999999999998544
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-34 Score=296.57 Aligned_cols=282 Identities=24% Similarity=0.379 Sum_probs=238.2
Q ss_pred EEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
..++.+|.+.|+|++|+|+ +++||+|+.||+|+|||+..... ........+.+|..
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-----------------------~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-----------------------NYGIPQRALRGHSH 87 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-----------------------CSEEEEEEECCCSS
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-----------------------ccceeeEEEeCCCC
Confidence 3468899999999999998 68999999999999999875211 11335567889999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM 501 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-~~~ 501 (656)
.|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ...
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 9999999999999999999999999999999888888889999999999999999999999999999999876544 344
Q ss_pred cCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 502 AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.+|...+.+++|++++ .++++++.|+.|++||+++++++..+.+|.++|++++|+|+|++|++|+.||.|++||+.++
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 5889999999999764 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
+++..+..+ ..|.+++|+|++.++ +++.|+.|++||+.+........... .......+..+|.+|+|++
T Consensus 248 ~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~s~ 316 (340)
T 4aow_A 248 KHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV------ISTSSKAEPPQCTSLAWSA 316 (340)
T ss_dssp EEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------------CCCCCEEEEEECT
T ss_pred ceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccc------eeeeccCCCCCEEEEEECC
Confidence 999888755 579999999988655 56679999999998876654433211 1223445667788888864
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=321.25 Aligned_cols=272 Identities=19% Similarity=0.340 Sum_probs=235.6
Q ss_pred cceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 330 NRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 330 ~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
..+++|+...... .......|...|++++|+|++++|++|+.||.|++|++....
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------------------------ 100 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------------------------ 100 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------------------------
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccc------------------------
Confidence 4567776544321 112234678899999999999999999999999999987411
Q ss_pred CCceeeEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCc------eeE---EeeCCCccEEEEEEecC-CCE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNA------NLV---CYKGHNYPVWDVQFNPQ-GHY 477 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~------~~~---~~~~h~~~V~~l~~sp~-~~~ 477 (656)
........+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. ... ....|...|.+++|+|+ +.+
T Consensus 101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (416)
T 2pm9_A 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV 180 (416)
T ss_dssp SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE
Confidence 012255667889999999999998 8999999999999999999876 333 23678999999999998 789
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCC------CCCeeEEEEcCCC-CEEEEEECCC---cEEEEeCCCC-eeEEEEe-c
Q 006220 478 FASSSHDRTARIWSMDRIQPLRIMAGH------LSDVDCVRWHINC-NYIATGSSDK---TVRLWDVSSG-ECVRIFI-G 545 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~-~~l~tgs~dg---~V~iwd~~~~-~~~~~~~-~ 545 (656)
|++++.||.|++||+++.+.+..+..+ ...|.+++|+|++ .++++++.|+ .|++||++++ .++..+. +
T Consensus 181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 999999999999999999999888876 7889999999997 6899999998 9999999986 6777787 8
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCc
Q 006220 546 HRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 546 h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|...|.+++|+| ++++|++++.||.|++||+.+++++..+.+|...|.+++|+|++ .+|++++.||.|++||+.+...
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 999999999999 99999999999999999999999999999999999999999998 8999999999999999988765
Q ss_pred ee
Q 006220 624 VL 625 (656)
Q Consensus 624 ~~ 625 (656)
..
T Consensus 341 ~~ 342 (416)
T 2pm9_A 341 TL 342 (416)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-34 Score=306.40 Aligned_cols=246 Identities=20% Similarity=0.262 Sum_probs=222.1
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
..|.+.|+|++|+|++++||+|+.||.|+||++... .......+.+|.+.|.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~--------------------------~~~~~~~~~~h~~~v~~~ 58 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------KWVQVHELKEHNGQVTGV 58 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------EEEEEEEEECCSSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------------------cEEeeeeecCCCCcccEE
Confidence 347789999999999999999999999999998741 112556678999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEe
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIM 501 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~----~~~~ 501 (656)
+|+|++++|++++.||.|++||+.+++.... +..|...|.+++|+|++.+|++|+.||.|++||++.... ....
T Consensus 59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 9999999999999999999999988865443 467899999999999999999999999999999988763 3333
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC------------------CCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV------------------SSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~------------------~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
.+|...|.+++|+|++++|++|+.||.|++||+ ..++++..+.+|...|.+++|+|++++|+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 578999999999999999999999999999995 46788999999999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+++.||.|++||+.+++++..+..|...|.+++|+|++.++++| .||.|++|++..
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999999999999999999999999999988877 999999999988
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-34 Score=332.98 Aligned_cols=258 Identities=28% Similarity=0.472 Sum_probs=227.9
Q ss_pred EEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
-.+.+|.+.|+|++|+|+ +++|++|+.||.|+||++..... ........+.+|.+.
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-----------------------~~~~~~~~~~~h~~~ 432 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-----------------------AYGVAQRRLTGHSHF 432 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-----------------------CSCEEEEEEECCSSC
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-----------------------ccccccceecCCCCc
Confidence 357789999999999987 57999999999999999874211 012345678899999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe--
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-- 501 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-- 501 (656)
|.+++|+|++++|++|+.||+|++||+.++..+..+.+|...|.+++|+|++.+|++|+.|++|++||+.........
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765444333
Q ss_pred -cCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 502 -AGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 502 -~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
.+|...|.|++|+|++ ..+++|+.|++|++||++++++...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3688899999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++++..+.. ...|.+++|+|++.+|++++ |+.|+|||+.++......
T Consensus 593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence 999887754 46799999999998887766 566999999988766544
No 48
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-36 Score=319.71 Aligned_cols=246 Identities=13% Similarity=0.183 Sum_probs=209.7
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+..+.+.|+|++|+|++++||+|+.||.|+||++.... ......+.+|.++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--------------------------~~~~~~~~~h~~~v~~ 60 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--------------------------WKHARTFSDHDKIVTC 60 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--------------------------EEECCCBCCCSSCEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--------------------------eEEEEEEecCCceEEE
Confidence 34456789999999999999999999999999987410 1344556789999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc---eeEE
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---PLRI 500 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---~~~~ 500 (656)
++|+|++++|++|+.||+|++||+.++. ....+.+|..+|++++|+|++.+|++|+.|++|++||+++.+ ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 9999999999999999999999999877 667788899999999999999999999999999999999877 4677
Q ss_pred ecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC------------------CCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220 501 MAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS------------------SGECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 501 ~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~------------------~~~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
+.+ |...|.+++|+|++++|++|+.|+.|++||+. .++++..+ +|...|++++|+|+|++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 777 99999999999999999999999999999985 35566777 89999999999999999
Q ss_pred EEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|++++.||.|++||+.+++. +..+.+|...|.+++|+|++++|++|+.|+.+ +|+...
T Consensus 220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 99999999999999999987 88889999999999999999999988766655 777653
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.9e-35 Score=313.49 Aligned_cols=269 Identities=16% Similarity=0.258 Sum_probs=236.1
Q ss_pred ccceecCCCCCCc-----eeEEEEeeCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCCcccccccCCCCC
Q 006220 329 RNRVHLSSAALPS-----VSFYTFINTHNGLNCASISQD----G---SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEN 396 (656)
Q Consensus 329 ~~~v~l~~~~~ps-----~~~~~~~~~~~~V~~l~fs~d----g---~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~ 396 (656)
...+++|+..... .....+..|...|+|++|+|+ + ++|++|+.||.|++|++......
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---------- 104 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---------- 104 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT----------
T ss_pred CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc----------
Confidence 4577888765443 345677789999999999999 9 99999999999999998752210
Q ss_pred CCCCCccccCCCCCceeeEEeecC-----ccCEEEEEEc----cCCCE-EEEEeCCCeEEEEeccC------CceeE---
Q 006220 397 DTTPREDIIGPNGRKRSYTLYQGH-----SGPVYSASFS----PLGDF-ILSSSADTTIRLWSTKL------NANLV--- 457 (656)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~l~~s----pd~~~-L~s~s~Dg~I~lwd~~~------~~~~~--- 457 (656)
.......+.+| .+.|.+++|+ |++.+ |++|+.||.|++||+.+ +..+.
T Consensus 105 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 105 -------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp -------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred -------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 01125566677 5999999999 99999 99999999999999998 66665
Q ss_pred --Ee-------eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---C---CCCeeEEEEcCCCCEEEE
Q 006220 458 --CY-------KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---H---LSDVDCVRWHINCNYIAT 522 (656)
Q Consensus 458 --~~-------~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---~---~~~V~~v~~~p~~~~l~t 522 (656)
.+ ..|...|.+++|+|++ +|++|+.||.|++||+++.+++..+.. | ...|.+++|+|++++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 66 4488999999999999 999999999999999999999999998 8 999999999999999999
Q ss_pred EECC---CcEEEEeCCCCeeEEEEec-------------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 523 GSSD---KTVRLWDVSSGECVRIFIG-------------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 523 gs~d---g~V~iwd~~~~~~~~~~~~-------------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
++.| |.|++||+++++.+..+.+ |...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999 9999999999999999998 99999999999999999999999999999999999999999
Q ss_pred ------CC---------------CccEEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 006220 587 ------GH---------------TSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 587 ------~h---------------~~~V~~l~~s~~~----------~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+| ...|++++|+|++ .+|++|+.||.|++|++.++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 88 9999999999998 79999999999999999775
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=305.53 Aligned_cols=290 Identities=12% Similarity=0.198 Sum_probs=239.4
Q ss_pred CCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceee
Q 006220 339 LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (656)
Q Consensus 339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (656)
.|......+.+|.+.|++++|+|++..+ ++|+. ||.|+||++.... ...
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------------------------~~~ 58 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------------------------LKL 58 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------------------------EEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------------------------ccc
Confidence 4556666778899999999999998654 56665 9999999987521 122
Q ss_pred EEeecCccCEEEEEEccC---CCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEEEE------ecCCCEEEEEECC
Q 006220 415 TLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDVQF------NPQGHYFASSSHD 484 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd---~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l~~------sp~~~~l~sgs~D 484 (656)
....+|..+|.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.++.| +|++.+|++|+.|
T Consensus 59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 333478999999999998 6999999999999999999888 88889999999999965 6789999999999
Q ss_pred CcEEEEECCCCc-eeEEecCCCC----CeeEEE----EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220 485 RTARIWSMDRIQ-PLRIMAGHLS----DVDCVR----WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (656)
Q Consensus 485 g~i~lwd~~~~~-~~~~~~~~~~----~V~~v~----~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (656)
|.|++||+++.. ++..+..|.+ .+.+++ |+|+++++++|+.||.|++||+++++.... ..|...|.+++|
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~ 217 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF 217 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc
Confidence 999999999887 7888876555 788998 788999999999999999999999988554 568899999999
Q ss_pred cC---CCCEEEEEECCCcEEEEeCCCCeeeEeee-----CCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCceee
Q 006220 556 SP---DGRYMASGDEDGTIMMWDLASGRCVTPLM-----GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 556 sp---~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-----~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
+| ++.+|++|+.||.|++||+++++.+..+. +|...|++++|+|++. +|++|+.||.|++||+..+.....
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 99 99999999999999999998877665554 8999999999999998 899999999999999987665432
Q ss_pred cccc----cCCccccccccccCCCCCeEEEEEcC
Q 006220 627 TEEK----SGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 627 ~~~~----~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.... ........+..+..+..+|.+++|++
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 2211 11122345667788888999999875
No 51
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=299.11 Aligned_cols=299 Identities=24% Similarity=0.411 Sum_probs=254.0
Q ss_pred ccccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeC
Q 006220 293 TSRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFS 371 (656)
Q Consensus 293 ~~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~ 371 (656)
..|..+.++.++|.+.+++|+..+.|+..+.+...+.+.+++|+...... ..+.+.+|...|+|++|+|++++||+|+.
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 34556778889999999999988888876655556678999998765543 34455677888999999999999999999
Q ss_pred CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc
Q 006220 372 DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK 451 (656)
Q Consensus 372 dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~ 451 (656)
||.|+||++.. ......+.+|...+.++++. +..+++|+.++.+++|+..
T Consensus 88 Dg~v~iw~~~~----------------------------~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 88 SAEVQLWDVQQ----------------------------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp TSEEEEEETTT----------------------------TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred CCcEEEeecCC----------------------------ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecC
Confidence 99999999875 34566778999998876664 6799999999999999988
Q ss_pred CCc-eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----eeEEecCCCCCeeEEEEcCCCCEE---EEE
Q 006220 452 LNA-NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ----PLRIMAGHLSDVDCVRWHINCNYI---ATG 523 (656)
Q Consensus 452 ~~~-~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~----~~~~~~~~~~~V~~v~~~p~~~~l---~tg 523 (656)
... .+..+.+|...+..+.+++++.++++++.||+|++||+++++ .......+.+.|.+++++|.+..+ +++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence 664 456778999999999999999999999999999999998765 345566788899999999976533 456
Q ss_pred ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG 601 (656)
Q Consensus 524 s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~ 601 (656)
+.+++|++||...+....... +...+..+.|+|++..+++++ .||.|++||+.+++++..+.+|.+.|++++|+|+|
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 678999999999888776654 667899999999999888765 79999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCC
Q 006220 602 SLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 602 ~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
++|+||+.||+|+|||+....
T Consensus 297 ~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SCEEEEETTTEEEEECCSCCC
T ss_pred CEEEEEecCCeEEEEECCCCC
Confidence 999999999999999997643
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=310.90 Aligned_cols=276 Identities=17% Similarity=0.303 Sum_probs=238.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
|.+.|+|++|+|++++|++|+.||.|++|+.. ......+.+|..+|.+++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-----------------------------~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-----------------------------GALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-----------------------------SCEEEEECCCCSCEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------------------------CCeeeeccCCCccEEEEEE
Confidence 56689999999999999999999999999943 2345567789999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc---------------EEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---------------VWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
+|++++|++++.||.|++||+.++..+..+..+... +.+++|+|++ .+++++.||.|++||+.+
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence 999999999999999999999999998888888777 9999999975 688999999999999999
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.+++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.||.|++|
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc-----cCCccccccccccCCCC--
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKST-- 647 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~-- 647 (656)
|+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++......... ........+..+..+..
T Consensus 316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 99999999999999999999999999999999999999999999875521111100 01112224566677755
Q ss_pred CeEEEEEcC
Q 006220 648 PVYSLQVLR 656 (656)
Q Consensus 648 pv~sv~Ftr 656 (656)
+|.+++|++
T Consensus 396 ~v~~~~~s~ 404 (425)
T 1r5m_A 396 YIFDLSWNC 404 (425)
T ss_dssp CEEEEEECT
T ss_pred ceEEEEccC
Confidence 899998874
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-34 Score=337.32 Aligned_cols=255 Identities=23% Similarity=0.382 Sum_probs=236.6
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.++.+|.+.|+|++|||++++||+|+.||.|+|||+.+ ......+.+|.++|
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----------------------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----------------------------QVEVRSIQVTETPV 58 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----------------------------TEEEEEEECCSSCE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------------CceEEEEecCCCcE
Confidence 46788999999999999999999999999999999864 34556777999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~ 503 (656)
.+++|+|++++|++|+.||.|++||+.++..+..+.+|...|++++|+|++.+|++|+.||+|++||++++ .....+.+
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 67778889
Q ss_pred CCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcC--CCCEEEEEECCCcEEEEeCCCC
Q 006220 504 HLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSP--DGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 504 ~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
|...|.+++|+| +++.|++|+.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999 88999999999999999999988877777665 8899999999 9999999999999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
+++..+.+|.+.|.+++|+|++.+|++++.||.|++||+.++......
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 999999999999999999999999999999999999999887655443
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=291.40 Aligned_cols=249 Identities=24% Similarity=0.321 Sum_probs=223.8
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
+.....++.+|.+.|+|++| +++++|++|+.||.|++||+.. ......+..
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------~~~~~~~~~ 57 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------QWLGTVVYT 57 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----------------------------SEEEEEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----------------------------CEEEEEeec
Confidence 33456678899999999999 9999999999999999999864 234566778
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
|.+.|.+++|+|++++|++|+.||.|++|++... ..+..+.+|..+|.+++| ++.++++++.||.|++|| ...
T Consensus 58 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~ 133 (313)
T 3odt_A 58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS 133 (313)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE
T ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc
Confidence 9999999999999999999999999999998754 456778899999999999 577999999999999999 667
Q ss_pred eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
....+..|...+.+++|+| +++++++++.||.|++|| .+.....+.. |...+.+++|+|++. +++++.||.|++|
T Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~ 210 (313)
T 3odt_A 134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLV 210 (313)
T ss_dssp EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEE
T ss_pred EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEE
Confidence 8888889999999999998 999999999999999999 5677777777 899999999999998 9999999999999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
|+++++.+..+.+|.+.|++++|+|++ .|++++.||.|++||+.+++...
T Consensus 211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence 999999999999999999999999999 58999999999999998876544
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-35 Score=309.85 Aligned_cols=262 Identities=22% Similarity=0.395 Sum_probs=224.1
Q ss_pred ccceecCCCCCCc-eeEEEEe---eCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCC
Q 006220 329 RNRVHLSSAALPS-VSFYTFI---NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP 400 (656)
Q Consensus 329 ~~~v~l~~~~~ps-~~~~~~~---~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~ 400 (656)
...+++|+..... ...+..+ .+...|++++|+|+ +.+|++|+.||.|+|||+..
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------ 104 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------ 104 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------
Confidence 3467778655322 2222222 25678999999999 67999999999999999874
Q ss_pred CccccCCCCCceeeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCC
Q 006220 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGH 476 (656)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~ 476 (656)
......+.+|.++|.+++|+| ++.+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.
T Consensus 105 ----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 105 ----------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp ----------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred ----------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence 234556778999999999999 8999999999999999999999988888 68999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceeEEe----------------------------cCCCCCeeEEEEcCCCCEEEEEECCCc
Q 006220 477 YFASSSHDRTARIWSMDRIQPLRIM----------------------------AGHLSDVDCVRWHINCNYIATGSSDKT 528 (656)
Q Consensus 477 ~l~sgs~Dg~i~lwd~~~~~~~~~~----------------------------~~~~~~V~~v~~~p~~~~l~tgs~dg~ 528 (656)
+|++++.||.|++||+++++....+ .+|...|.+++|+ ++++++++.||.
T Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 252 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA 252 (366)
T ss_dssp EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE
Confidence 9999999999999999876544332 3499999999998 779999999999
Q ss_pred EEEEeCCCCee--------------EEEEecCCCCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCeee----EeeeCC
Q 006220 529 VRLWDVSSGEC--------------VRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMWDLASGRCV----TPLMGH 588 (656)
Q Consensus 529 V~iwd~~~~~~--------------~~~~~~h~~~i~~l~~sp~--g~~L~s~~~dg~I~iwD~~~~~~~----~~~~~h 588 (656)
|++||++++.. +..+.+|...|++++|+|+ |++|++|+.||.|++||+.++++. ..+.+|
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 332 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 332 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT
T ss_pred EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc
Confidence 99999987744 7888899999999999999 999999999999999999987643 467777
Q ss_pred --CccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 589 --TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 589 --~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
...|++++|+|++++|++++.||.|++||+.+
T Consensus 333 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 333 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 79999999999999999999999999999853
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-34 Score=329.72 Aligned_cols=262 Identities=27% Similarity=0.425 Sum_probs=226.5
Q ss_pred ccceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+++|+... ...+...+.+|...|+|++|+|++++|++|+.||.|+|||+..
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~---------------------- 461 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA---------------------- 461 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Confidence 45788886533 2345667889999999999999999999999999999999874
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCC--CEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQG--HYFA 479 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~--~~l~ 479 (656)
......+.+|.+.|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++ ..++
T Consensus 462 ------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 462 ------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred ------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 3355678899999999999999999999999999999998754333322 3688899999999986 6899
Q ss_pred EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
+|+.|++|++||+++.+....+.+|.+.|.+++|+|++++|++|+.||+|++||+++++++..+.. ...|.+++|+|++
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNR 614 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887764 4679999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeeeEeeeCCC-------------------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHT-------------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-------------------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.+|++++ ++.|+|||+.++..+..+..+. ..+++++|+|+|++|++|+.||+|+||++..
T Consensus 615 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 615 YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 9888776 5669999999998887765322 1378999999999999999999999999853
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=315.51 Aligned_cols=257 Identities=20% Similarity=0.349 Sum_probs=215.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc--------
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-------- 421 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-------- 421 (656)
+.+.|+|++|+|+|++||+|+.||.|+||++........ ...........+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~~~~~~~ 89 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-----------------HSRGEYNVYSTFQSHEPEFDYLKS 89 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-----------------CCCCCEEEEEEEECCCCEEEGGGT
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-----------------ccccceeEeccccccccccccccc
Confidence 457899999999999999999999999999875321100 0111233566788998
Q ss_pred ----cCEEEEEEccCC--CEEEEEeCCCeEEEEeccCCcee---------------------------------------
Q 006220 422 ----GPVYSASFSPLG--DFILSSSADTTIRLWSTKLNANL--------------------------------------- 456 (656)
Q Consensus 422 ----~~V~~l~~spd~--~~L~s~s~Dg~I~lwd~~~~~~~--------------------------------------- 456 (656)
++|++++|+|++ ..|++++.||+|++||+.++...
T Consensus 90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp EEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 889999999998 79999999999999998764331
Q ss_pred EE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEE-------ecCCCCCeeEEEEcCCC-CEEEEEECC
Q 006220 457 VC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRI-------MAGHLSDVDCVRWHINC-NYIATGSSD 526 (656)
Q Consensus 457 ~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~-------~~~~~~~V~~v~~~p~~-~~l~tgs~d 526 (656)
.. ..+|..+|++++|+|++.+|++| .|++|++||++. ...+.. +.+|...|.+++|+|++ ++|++|+.|
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 12 36799999999999999999998 799999999984 444442 45899999999999998 999999999
Q ss_pred CcEEEEeCCCCee----EEEEecCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeCCC
Q 006220 527 KTVRLWDVSSGEC----VRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMGHT 589 (656)
Q Consensus 527 g~V~iwd~~~~~~----~~~~~~h~~------------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~h~ 589 (656)
|.|++||++++.. +..+.+|.. .|.+++|+|+|++|++++. |.|++||+++ ++++..+.+|.
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 9999999999887 788888876 8999999999999999999 9999999997 88898998886
Q ss_pred cc---------------EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 590 SC---------------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 590 ~~---------------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.. +..++|+|++++|++|+.||.|++||+.+++...
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 42 3349999999999999999999999999887653
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=305.14 Aligned_cols=266 Identities=14% Similarity=0.251 Sum_probs=227.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d---g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
...+++|+............+|...|+|++|+|+ +.+|++|+.||.|++|++....
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------- 101 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------------------- 101 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---------------------
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---------------------
Confidence 4578889877666655556688999999999999 7999999999999999987521
Q ss_pred CCCCCceeeEEeecCccCEEEEE------EccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCc----cEEEEE----
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSAS------FSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNY----PVWDVQ---- 470 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~------~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~----~V~~l~---- 470 (656)
.....+.+|.+.|.++. |+|++++|++|+.||+|++||+.++. .+..+..|.. .|++++
T Consensus 102 ------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 102 ------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp ------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred ------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 13455778999999995 46889999999999999999999887 6777766554 899998
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCeeEEEEe---
Q 006220 471 FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFI--- 544 (656)
Q Consensus 471 ~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--- 544 (656)
|+|++.++++++.||.|++||+++++.... ..|...|.+++|+| +++++++|+.||.|++||+++++.+..+.
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence 788999999999999999999999887544 56889999999999 99999999999999999998877655444
Q ss_pred --cCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-------------------eeeEeeeCCCccEEEEEEcCCCC
Q 006220 545 --GHRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-------------------RCVTPLMGHTSCVWTLAYSCEGS 602 (656)
Q Consensus 545 --~h~~~i~~l~~sp~g~-~L~s~~~dg~I~iwD~~~~-------------------~~~~~~~~h~~~V~~l~~s~~~~ 602 (656)
+|...|++++|+|+++ +|++|+.||.|++||+..+ +++..+.+|...|++++|+|+++
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 8999999999999998 8999999999999999754 46777889999999999999999
Q ss_pred EEE-EEECCCcEEEEeCCCCC
Q 006220 603 LLA-SGSADCTVKLWDVTTST 622 (656)
Q Consensus 603 ~l~-sgs~Dg~I~iWd~~~~~ 622 (656)
+|+ +++.||.|++||+.+..
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TEEEEEETTSEEEEEEECC--
T ss_pred eEEEEecCCCcEEEEECCCcc
Confidence 998 89999999999998754
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-33 Score=292.18 Aligned_cols=261 Identities=20% Similarity=0.323 Sum_probs=231.3
Q ss_pred ccceecCCCCCC----ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~p----s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+++|+.... ....+....|...|++++|+|++++|++|+.||.|++|++....
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------------------- 130 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-------------------- 130 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--------------------
Confidence 456778865432 22233334788899999999999999999999999999987521
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
......+.+|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|
T Consensus 131 ------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 131 ------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp -------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 22445677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
|.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++|+|++++|++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence 999999999998887775 6788999999999999999999999999999988764 56789999999999999999999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999887543 57889999999999999999999999999997
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-34 Score=308.27 Aligned_cols=243 Identities=21% Similarity=0.317 Sum_probs=213.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..+.+..|++++++||+|+.||.|+|||+.. ......+.+|.+.|++++|+|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~~~~~~ 149 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------NLQREIDQAHVSEITKLKFFP 149 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTS----------------------------CEEEEETTSSSSCEEEEEECT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCC----------------------------cceeeecccccCccEEEEECC
Confidence 4456668899999999999999999999864 234455678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC---C---
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH---L--- 505 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~---~--- 505 (656)
++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.||+|++||+++++.+..+..| .
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888753 2
Q ss_pred ------------------CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCC-EEEEE
Q 006220 506 ------------------SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGR-YMASG 565 (656)
Q Consensus 506 ------------------~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~-~L~s~ 565 (656)
..+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|++++|+|++. +|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 445555668999999999999999999999998877665 5788999999999999 99999
Q ss_pred ECCCcEEEEeCCCCee-eEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 566 DEDGTIMMWDLASGRC-VTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~-~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+.||.|++||+++++. +..+.+ |...|.++.| +++.+|++++.||.|++|++.....
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999999998754 677776 6678888865 5788999999999999999987543
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.2e-34 Score=302.96 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=216.4
Q ss_pred EEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 344 FYTFINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
..++.+|.+.|+|++|+|++ ++||+|+.||.|+||++.... ........+|.+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~h~~ 119 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--------------------------KTSFIQGMGPGD 119 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--------------------------CEEEECCCSTTC
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--------------------------cceeeecCCcCC
Confidence 44677889999999999999 999999999999999987521 112223347999
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCC---CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 423 ~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.|.+++|+| ++.+|++++.|++|++||+.+ ..+..+..+ ...|.+++|+|++.+|++|+.||.|++||+ +++++
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 999999999 678999999999999999995 555555544 478999999999999999999999999999 57788
Q ss_pred EEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC----CeeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEE
Q 006220 499 RIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS----GECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIM 572 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~----~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~ 572 (656)
..+.+|...|.+++|+|++. ++++|+.|+.|++||+++ +.++..+ +|...|.+++|+| +|++|++++.||.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 88999999999999999999 999999999999999998 6677766 6999999999999 999999999999999
Q ss_pred EEeCCCCeeeEeeeCCC-----------------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 573 MWDLASGRCVTPLMGHT-----------------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~-----------------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
+||+++++.+..+.+|. +.+..++|+|++++ +|+.||.|++||+.+++......
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 99999988877776543 33445666666666 77799999999999988765543
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=325.53 Aligned_cols=247 Identities=11% Similarity=0.048 Sum_probs=206.7
Q ss_pred eCCCCeEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEcCCCCcccccccCCCCCCCCC
Q 006220 349 NTHNGLNCASISQDG---------SLVAG-------------------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP 400 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg---------~~La~-------------------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~ 400 (656)
.+.+.|.|++|+|++ ++||+ |+.|++|+||++......
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~-------------- 196 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH-------------- 196 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC--------------
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC--------------
Confidence 356778888888776 56666 447789999998642110
Q ss_pred CccccCCCCCceeeEEeecCccCEEEEEEccC------CCEEEEEeCCCeEEEEeccCCce-----------eEEeeCCC
Q 006220 401 REDIIGPNGRKRSYTLYQGHSGPVYSASFSPL------GDFILSSSADTTIRLWSTKLNAN-----------LVCYKGHN 463 (656)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~h~ 463 (656)
......+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.. ...+.+|.
T Consensus 197 ----------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 197 ----------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp ----------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred ----------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 1122345678899999999997 57999999999999999986642 24678899
Q ss_pred ccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEE--EEcCCC-CEEEEEECCCcEEEEeCCCCee
Q 006220 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCV--RWHINC-NYIATGSSDKTVRLWDVSSGEC 539 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v--~~~p~~-~~l~tgs~dg~V~iwd~~~~~~ 539 (656)
.+|++++|+++ ..|++|+.||+|++||++++ .+...+.+|...|.+| +|+|++ .+|++|+.|++|++||++++++
T Consensus 267 ~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 267 SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99999999986 48999999999999999876 4566788999999999 567887 8999999999999999999988
Q ss_pred EEEEecCCC--CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 540 VRIFIGHRS--MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 540 ~~~~~~h~~--~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
+..+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 877777753 588999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCC
Q 006220 618 VTT 620 (656)
Q Consensus 618 ~~~ 620 (656)
+..
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 754
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-34 Score=302.98 Aligned_cols=268 Identities=16% Similarity=0.165 Sum_probs=229.8
Q ss_pred ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+++|+..... .+...+.+|...|++++|+|++++|++|+.||.|++|++....
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------------- 85 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----------------------- 85 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----------------------
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----------------------
Confidence 4577888765443 2455677889999999999999999999999999999986411
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
......+.+|...|.+++|+|++++|++|+.||.|++||+..+.. .....+|...|.+++|+|++.+|++|+.
T Consensus 86 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 86 ---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp ---EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ---eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 122334567899999999999999999999999999999998763 2333568999999999999999999999
Q ss_pred CCcEEEEECC------------------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec
Q 006220 484 DRTARIWSMD------------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG 545 (656)
Q Consensus 484 Dg~i~lwd~~------------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~ 545 (656)
||.|++||++ .++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999953 6678888889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--Cee--------------------------------e------Eee
Q 006220 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--GRC--------------------------------V------TPL 585 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~--~~~--------------------------------~------~~~ 585 (656)
|..+|.+++|+|++.+|++| .||.|++||+.. +.. . ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 99999999999999988888 899999999987 421 0 223
Q ss_pred -eCCCccEEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCCc
Q 006220 586 -MGHTSCVWTLAYS-CEG---SLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 586 -~~h~~~V~~l~~s-~~~---~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.+|...|++++|+ ++| .+|++|+.||.|++||+.+++.
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 4899999999976 666 9999999999999999977544
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=304.37 Aligned_cols=260 Identities=17% Similarity=0.248 Sum_probs=221.4
Q ss_pred EEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCCc------ccccccCCCCCCCCCCccccCCCCCcee
Q 006220 345 YTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM----AKLGQ------QAVSSGLQGENDTTPREDIIGPNGRKRS 413 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (656)
+..+.|.+.|+|++|+|+++ +||+|+.||.|++|++ ..... ...... ....
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 100 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------PFAL 100 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC------------------CCCC
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc------------------cccc
Confidence 34566778999999999999 9999999999999999 54221 000000 0000
Q ss_pred eEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
.....+|.+.|++++|+|++++|++|+.||.|++|| .++..+..+.+|..+|.+++|+|++.+|++++.||.|++||+.
T Consensus 101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 011234788999999999999999999999999999 5678888899999999999999999999999999999999999
Q ss_pred CCceeEEecCCCCC---------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220 494 RIQPLRIMAGHLSD---------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 494 ~~~~~~~~~~~~~~---------------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
+++.+..+..+... +.+++|+|++ .+++++.+|.|++||+++++.+..+.+|...|.+++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 99999988887776 9999999975 6889999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 559 GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.||.|++||+.++....
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence 9999999999999999999999999999999999999999999 99999999999999998866443
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=311.43 Aligned_cols=263 Identities=14% Similarity=0.276 Sum_probs=219.0
Q ss_pred eeEEEE-eeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 342 VSFYTF-INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 342 ~~~~~~-~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
....++ .+|.+.|+|++|+| ++++||+|+.||.|+|||+....... ........+
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------------~~~~~~~~~ 109 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------------VYSSSLTYD 109 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------------CCSCSEEEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------------ccceeeecc
Confidence 344556 56778999999999 99999999999999999986410000 001111225
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEecc---CCceeEEeeC------------CCccEEEEE--EecCCCEEEEEE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK---LNANLVCYKG------------HNYPVWDVQ--FNPQGHYFASSS 482 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~---~~~~~~~~~~------------h~~~V~~l~--~sp~~~~l~sgs 482 (656)
|.++|++++|+|++.+|++|+.||+|++||+. ++.......+ +...+.++. +++++.+|++|+
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999994 5555443332 344566666 557899999999
Q ss_pred CCCcEEEEECCCCceeEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcC--
Q 006220 483 HDRTARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSP-- 557 (656)
Q Consensus 483 ~Dg~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp-- 557 (656)
.||.|++||+++++++..+.+ |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|++++|+|
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 999999999999999999988 88999999999999999999999999999999999999886 7888999996654
Q ss_pred --CCCEEEEEECCCcEEEEeCCCCeeeEeeeC--------------------------CCccEEEEEEcCCCCEEEEEEC
Q 006220 558 --DGRYMASGDEDGTIMMWDLASGRCVTPLMG--------------------------HTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 558 --~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--------------------------h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
++.+|++|+.||.|++||+.+++++..+.+ |...|++++|+ ++.+|++|+.
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA 348 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence 688999999999999999999998887764 44568889999 7789999999
Q ss_pred CCcEEEEeCCCCCceeecc
Q 006220 610 DCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 610 Dg~I~iWd~~~~~~~~~~~ 628 (656)
||.|++||+.+++......
T Consensus 349 d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp GTEEEEEETTCGGGCEEEE
T ss_pred CCeEEEEECCCcccceEEe
Confidence 9999999999988765443
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-34 Score=302.10 Aligned_cols=272 Identities=16% Similarity=0.282 Sum_probs=227.8
Q ss_pred EeeCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE--eecC
Q 006220 347 FINTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH 420 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h 420 (656)
..+|.+.|+|++|+|+ ...+++++.++.|+||++...... ..... ...|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------------------------~~~~~~~~~~~ 68 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------------------------RLLQSYVDADA 68 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------------------------EEEEEEECSCT
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------------------------EeeeeccccCC
Confidence 3468889999999984 556666667889999998752211 11111 1237
Q ss_pred ccCEEEEEEccC----CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC
Q 006220 421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 421 ~~~V~~l~~spd----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
.+.|++++|+|+ +.+|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| ++.+|++|+.||.|++||++++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 789999999999 66999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeEEe---cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------
Q 006220 496 QPLRIM---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------------------------- 544 (656)
Q Consensus 496 ~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------------------------- 544 (656)
+.+..+ .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 999888 6899999999999999999999999999999999876543333
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee--------------eEeeeCCCccEEEEEEcCC--CCEEEEEE
Q 006220 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--------------VTPLMGHTSCVWTLAYSCE--GSLLASGS 608 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~--------------~~~~~~h~~~V~~l~~s~~--~~~l~sgs 608 (656)
+|...|.+++|+ +++|++++.||.|++||+.++.. +..+.+|...|++++|+|+ +++|++|+
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 399999999999 78999999999999999987744 7788899999999999999 99999999
Q ss_pred CCCcEEEEeCCCCCceeecccccCCccccccccccCC--CCCeEEEEEcC
Q 006220 609 ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK--STPVYSLQVLR 656 (656)
Q Consensus 609 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~pv~sv~Ftr 656 (656)
.||.|++||+.++..... .+..+..+ ..+|.+++|++
T Consensus 307 ~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKA-----------KCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp TTSCEEEEECCSSSGGGC-----------EEEEECCTTCCSCEEEEEECT
T ss_pred cCCcEEEEECCCCCCccc-----------cceEEcccccCCceEEEEeCC
Confidence 999999999988754321 11123333 56777777763
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=321.37 Aligned_cols=277 Identities=7% Similarity=0.035 Sum_probs=221.2
Q ss_pred HhccceecCCCCCCce---eEEEEeeCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC
Q 006220 327 DLRNRVHLSSAALPSV---SFYTFINTHNGLNCASISQD------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND 397 (656)
Q Consensus 327 ~~~~~v~l~~~~~ps~---~~~~~~~~~~~V~~l~fs~d------g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~ 397 (656)
.....+++|+...... ...++..|.+.|++++|+|+ +.+||+|+.||+|+||++..........
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------- 252 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF------- 252 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------
Confidence 4556888997544332 12456677789999999997 5799999999999999987532110000
Q ss_pred CCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEeeCCCccEEEE--EEecC
Q 006220 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYKGHNYPVWDV--QFNPQ 474 (656)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~~h~~~V~~l--~~sp~ 474 (656)
. ........+.+|.+.|++++|+++ ..|++|+.||+|++||+.++. ....+.+|..+|+++ .|+|+
T Consensus 253 -------~---~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~ 321 (524)
T 2j04_B 253 -------K---MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF 321 (524)
T ss_dssp -------E---CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT
T ss_pred -------e---eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCC
Confidence 0 001123457789999999999986 489999999999999999764 456688999999999 57888
Q ss_pred C-CEEEEEECCCcEEEEECCCCceeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220 475 G-HYFASSSHDRTARIWSMDRIQPLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551 (656)
Q Consensus 475 ~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~ 551 (656)
+ .+|++|+.|++|++||+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|+
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 7 8999999999999999998887777777654 588999999999999999999999999999999889999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCC--------------------------------------------CeeeEeeeC
Q 006220 552 SLAMSPDGRYMASGDEDGTIMMWDLAS--------------------------------------------GRCVTPLMG 587 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~--------------------------------------------~~~~~~~~~ 587 (656)
+++|||+|++|++|+.||+|++||+.. +.++..+.+
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC
Confidence 999999999999999999999998521 112233456
Q ss_pred CCccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCC
Q 006220 588 HTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 588 h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~ 621 (656)
|...|++++|+|++ ..+|+|+.||.|+||++.-.
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 88899999999995 49999999999999998653
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=285.52 Aligned_cols=262 Identities=22% Similarity=0.350 Sum_probs=230.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... .....+..|.+.|.+++|+|++++|++|+.||.|++|++....
T Consensus 38 dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------------------------ 92 (313)
T 3odt_A 38 DGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS------------------------ 92 (313)
T ss_dssp TSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT------------------------
T ss_pred CCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC------------------------
Confidence 356788876433 3445667888999999999999999999999999999987421
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTA 487 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i 487 (656)
.......+.+|...|.+++| +++++++++.||.|++|| .+.....+..|..++.++.|+| ++.++++++.||.|
T Consensus 93 -~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 93 -GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp -TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred -CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 12234556789999999999 578999999999999999 6778888899999999999999 99999999999999
Q ss_pred EEEECCCCceeEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 488 RIWSMDRIQPLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
++|| ..+....+.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+.+|...|++++|+|++ .|++++
T Consensus 168 ~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~ 243 (313)
T 3odt_A 168 KLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG 243 (313)
T ss_dssp EEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE
T ss_pred EEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe
Confidence 9999 4566777776 899999999999998 9999999999999999999999999999999999999999 588999
Q ss_pred CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.||.|++||+.+++++..+..|...|.+++|+|++. +++++.||.|++||+.+++...
T Consensus 244 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 244 EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 999999999999999999999999999999999998 6679999999999998866543
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-33 Score=298.48 Aligned_cols=200 Identities=14% Similarity=0.090 Sum_probs=174.4
Q ss_pred CccCEEEEEEccCCCEEEE--EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 420 HSGPVYSASFSPLGDFILS--SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s--~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
+...+.+++|||||+++++ ++.|++|+|||+.++..+..+. |...|.+++|+|+|.++++++.+ .+.+|+..++..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 3456889999999998765 4478999999999999888876 77789999999999999999854 566777666665
Q ss_pred eEE--ecCCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCee----EEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 498 LRI--MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 498 ~~~--~~~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+.. ..+|...|.+++|+|++.++++++.|+ .+++||+..+.. ...+.+|..+|++++|+|+|++||+|+.
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 533 346888999999999999999999887 688999887654 3567789999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeEee-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 568 DGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
||+|+|||+.+++++..+ .+|...|++++|||||++|+|||.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999885 689999999999999999999999999999999654
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-33 Score=290.58 Aligned_cols=266 Identities=16% Similarity=0.224 Sum_probs=235.7
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... ....++..|.+.|++++|+|++++|++|+.||.|++||+...
T Consensus 53 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------------- 106 (369)
T 3zwl_B 53 DSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG------------------------- 106 (369)
T ss_dssp SSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------------------------
T ss_pred CCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------
Confidence 346788875443 345567789999999999999999999999999999998752
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCc-----------eeEEeeCCCc--cEEEEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNA-----------NLVCYKGHNY--PVWDVQ 470 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~-----------~~~~~~~h~~--~V~~l~ 470 (656)
.....+. |..+|.+++|+|+++++++++.+ |.|++||+.... ....+..|.. .+.+++
T Consensus 107 ---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 107 ---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp ---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred ---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 2223333 88899999999999999999999 999999988654 3445556666 899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC
Q 006220 471 FNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM 549 (656)
Q Consensus 471 ~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~ 549 (656)
|+|++.+|++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 999999999999999999999998 78888999999999999999999999999999999999999999998887 7788
Q ss_pred eEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 550 ILSLAMSPDGRYMASGDEDG--------------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg--------------~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
+.+++|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcee
Q 006220 616 WDVTTSTKVL 625 (656)
Q Consensus 616 Wd~~~~~~~~ 625 (656)
|++..+....
T Consensus 342 w~~~~~~~~~ 351 (369)
T 3zwl_B 342 HHFEKSYFDF 351 (369)
T ss_dssp EEECHHHHTC
T ss_pred EECccccchh
Confidence 9998765433
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=287.08 Aligned_cols=265 Identities=25% Similarity=0.407 Sum_probs=228.5
Q ss_pred ccceecCCCCC----CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAAL----PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~----ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+++|+... ...+..++.+|...|++++|+|++++|++|+.|+.|++|+...
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~---------------------- 117 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT---------------------- 117 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc----------------------
Confidence 45788886533 2455667888999999999999999999999999999999874
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecCC--CEEEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQG--HYFASS 481 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~~--~~l~sg 481 (656)
.........+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+.+++|++++ .+++++
T Consensus 118 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 118 ------GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp ------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ------cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 2344556678888999999999999999999999999998765543 3456789999999999864 578999
Q ss_pred ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
+.|++|++||+++.+.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++|+|++.+
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYW 270 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSE
T ss_pred cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999988755 67999999998765
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeee---------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLM---------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+ +++.|+.|++||+.++..+..+. +|...|++++|+|+|++|++|+.||.|+|||+.+|++
T Consensus 271 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 271 L-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp E-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred e-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 5 55569999999999887776553 6888999999999999999999999999999998763
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-34 Score=309.06 Aligned_cols=241 Identities=17% Similarity=0.244 Sum_probs=212.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
+++++|+|++++|++|+.||.|++|++..... ...+..| ..+....|+|++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~ 109 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG----------------------------SKMLKRA-DYTAVDTAKLQM 109 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEET----------------------------TTTSCSC-CEEEEEEECSSS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccce----------------------------eeEEecC-CceEEEEEecCC
Confidence 56789999999999999999999999875211 1112233 445556789999
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~ 513 (656)
++|++|+.||.|++||+.++.....+.+|..+|.+++|+|++.+|++|+.||+|++||+++++.+..+.+|...|.+++|
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC---CCCeEE---------------------EEEcCCCCEEEEEECCC
Q 006220 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILS---------------------LAMSPDGRYMASGDEDG 569 (656)
Q Consensus 514 ~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h---~~~i~~---------------------l~~sp~g~~L~s~~~dg 569 (656)
+|++++|++|+.||+|++||+++++++..+..| ...+.+ ++|+|+|++|++|+.||
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 999999999999999999999999999988753 334444 55578999999999999
Q ss_pred cEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCc
Q 006220 570 TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|++||+.++..
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 99999999998877775 5789999999999998 999999999999999998754
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=296.34 Aligned_cols=265 Identities=22% Similarity=0.344 Sum_probs=219.1
Q ss_pred EEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.+..|.+.|+|++|+| ++++||+|+.||.|+||++............. ..........+|.+.|
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------VCSIGRDHPDVHRYSV 102 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------EEEECTTCTTCCSSCE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------cccccccccccCCCcE
Confidence 4567899999999999 99999999999999999998633211100000 0000001123699999
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCCceeEE
Q 006220 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 425 ~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
.+++|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|. +.++++|+.||.|++||+++++.+..
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 9999999 77899999999999999999988887776 7778999999994 45999999999999999999999999
Q ss_pred ecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCe-eEEEE---------------ecCCCCeEEEEEcCCCCEEE
Q 006220 501 MAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE-CVRIF---------------IGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~-~~~~~---------------~~h~~~i~~l~~sp~g~~L~ 563 (656)
+.+|...|.+++|+|++. .+++|+.||.|++||++++. ++..+ .+|...|.+++|+|+|++|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 999999999999999998 58999999999999998775 44444 57889999999999999999
Q ss_pred EEECCCcEEEEeCCCC-----------------------------------------------eeeEeeeCCCccEEEEE
Q 006220 564 SGDEDGTIMMWDLASG-----------------------------------------------RCVTPLMGHTSCVWTLA 596 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~-----------------------------------------------~~~~~~~~h~~~V~~l~ 596 (656)
+++.||.|++||+.++ +++..+.+|.+.|++++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 9999999999998754 34556678999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 597 YSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 597 ~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
|+|++++|++|+.||.|++||+.+.+....
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 999999999999999999999999876544
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-33 Score=301.04 Aligned_cols=261 Identities=16% Similarity=0.189 Sum_probs=218.8
Q ss_pred ccceecCCCCCCcee-EEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 329 RNRVHLSSAALPSVS-FYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
...+++|+....... .+...+|.+.|++++|+| ++++|++|+.||.|++||+....
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------------- 152 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV---------------------- 152 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----------------------
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----------------------
Confidence 457888877654433 333347899999999999 78999999999999999987410
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCC
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDR 485 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg 485 (656)
........+|...|.+++|+|++++|++|+.||.|++||+ ++..+..+.+|...|.+++|+|++. +|++|+.|+
T Consensus 153 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 153 ----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp ----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 1122223345689999999999999999999999999999 4778888999999999999999998 999999999
Q ss_pred cEEEEECCC----CceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------------
Q 006220 486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------- 547 (656)
Q Consensus 486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------------- 547 (656)
+|++||+++ ...+..+ +|...|.+++|+| ++.+|++++.|+.|++||++++..+..+.+|.
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 999999987 5566666 6999999999999 99999999999999999999988877776553
Q ss_pred ----CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 548 ----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 548 ----~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+.+..++|+|+|++ +|+.||.|++||+.+++++..+.+ |.+.+..++|+|++.+|++|+ ||.|+|||+.+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 23444666666666 677899999999999999999987 457788889999999999997 99999999875
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-33 Score=293.79 Aligned_cols=249 Identities=13% Similarity=0.089 Sum_probs=218.6
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
..|.+.|+|++|+|++++|++|+.||.|+||++..... ........+|...|.++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-------------------------~~~~~~~~~~~~~v~~~ 62 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------NVDLLQSLRYKHPLLCC 62 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------EEEEEEEEECSSCEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-------------------------cccceeeeecCCceEEE
Confidence 36778999999999999999999999999999875210 12234456899999999
Q ss_pred EEccCCC-EEEEEeCCCeEEEEec-cCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 006220 428 SFSPLGD-FILSSSADTTIRLWST-KLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--------- 494 (656)
Q Consensus 428 ~~spd~~-~L~s~s~Dg~I~lwd~-~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~--------- 494 (656)
+|+|+++ +|++|+.||.|++||+ .++. ...+.+ |...|.+++|+| +.+|++++.|+.|++||+++
T Consensus 63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EEEESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EECCCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 9999999 9999999999999999 7664 477788 999999999999 99999999999999999987
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-Ce--eEEEEecCCCCeEEEEEcC-CCCEEEEEECCCc
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GE--CVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT 570 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~--~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~ 570 (656)
.+++..+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...+.+++|+| +++++++++.||.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 66666666 88999999999987 99999999999999998 54 3445567888999999999 9999999999999
Q ss_pred EEEEeCCCC------eeeEeeeCCCc---------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 571 IMMWDLASG------RCVTPLMGHTS---------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 571 I~iwD~~~~------~~~~~~~~h~~---------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
|++||+... +....+..|.. .|.+++|+|++++|++|+.||.|++||+.+++....
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 999999887 77888888865 999999999999999999999999999998765543
No 76
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.3e-33 Score=303.63 Aligned_cols=264 Identities=25% Similarity=0.440 Sum_probs=227.4
Q ss_pred CceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220 340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (656)
+.........|.+.|++++|+|+ +.+||+|+.+|.|+||++........ ..........+.
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~~~~~~~~~ 178 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGECQPDLRLR 178 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCCCCCSEEEE
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------ccccCCCcEEec
Confidence 34445567889999999999997 78999999999999999975211100 111234556778
Q ss_pred cCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEE
Q 006220 419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~l 489 (656)
+|.+.|++++|+|++. +|++|+.||+|++|++.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 9999999999999998 999999999999999987432 456778999999999999 7889999999999999
Q ss_pred EECCCC---ceeEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCC-EEE
Q 006220 490 WSMDRI---QPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGR-YMA 563 (656)
Q Consensus 490 wd~~~~---~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~-~L~ 563 (656)
||+++. +++..+..|...|++++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|++++|+|+++ +|+
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 999987 57788889999999999999887 688999999999999998 577888999999999999999985 799
Q ss_pred EEECCCcEEEEeCCC--------------CeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCC
Q 006220 564 SGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 564 s~~~dg~I~iwD~~~--------------~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~ 621 (656)
+++.||.|+|||+.. ...+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999999999987 356777789999999999999999 9999999999999999764
No 77
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=307.60 Aligned_cols=249 Identities=20% Similarity=0.352 Sum_probs=218.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 352 NGLNCASISQDGS-LVAGG----------FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 352 ~~V~~l~fs~dg~-~La~g----------~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
..|.|++|+|+++ +||+| +.||.|+||++...... .......|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~ 66 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------KPIASLQV 66 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------------SCSCCCCC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------------cEEEEEec
Confidence 3689999999987 99999 88999999998752110 01112358
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
...|++++|+|++++|++|+.||.|++|++.+ ...+..+.+|..+|.+++|+|+ +.+|++++.||+|++||+.+.
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 89999999999999999999999999999987 4577888999999999999998 899999999999999999887
Q ss_pred c------eeE---EecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecC------CCCeEEEEEcCCC
Q 006220 496 Q------PLR---IMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------RSMILSLAMSPDG 559 (656)
Q Consensus 496 ~------~~~---~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------~~~i~~l~~sp~g 559 (656)
+ ... ...+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 6 332 23578999999999998 789999999999999999999999988877 7899999999997
Q ss_pred -CEEEEEECCC---cEEEEeCCCC-eeeEeee-CCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 560 -RYMASGDEDG---TIMMWDLASG-RCVTPLM-GHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 560 -~~L~s~~~dg---~I~iwD~~~~-~~~~~~~-~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.+|++++.|+ .|++||++++ .++..+. +|...|.+++|+| ++.+|++++.||.|++||+.+++....
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence 6999999998 9999999986 6777787 8999999999999 999999999999999999988765543
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-32 Score=298.49 Aligned_cols=261 Identities=21% Similarity=0.410 Sum_probs=230.6
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... .+..++.+|.+.|++++|++++ +|++|+.||.|++||+.+
T Consensus 141 dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-------------------------- 192 (464)
T 3v7d_B 141 DKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-------------------------- 192 (464)
T ss_dssp TSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------------------------
T ss_pred CCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------------------------
Confidence 457888876544 3556777899999999999988 999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEc--cCCCEEEEEeCCCeEEEEeccCCce-----------------------eEEeeCCC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFS--PLGDFILSSSADTTIRLWSTKLNAN-----------------------LVCYKGHN 463 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~s--pd~~~L~s~s~Dg~I~lwd~~~~~~-----------------------~~~~~~h~ 463 (656)
......+.+|.++|.+++|+ +++.++++|+.||+|++||+.++.. +..+.+|.
T Consensus 193 --~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 193 --GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp --TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred --CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 23556678899999999998 5778999999999999999987653 44667888
Q ss_pred ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF 543 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~ 543 (656)
..|.++ ++++.++++|+.||.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 888876 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 544 IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 544 ~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.+|...|.+++|+ +++|++|+.||.|++||+.++...... .|...+..++|++++.++++|+ ||.|++||+.+++.
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 9999999999998 689999999999999999988776655 3566778889999999999998 99999999999876
Q ss_pred ee
Q 006220 624 VL 625 (656)
Q Consensus 624 ~~ 625 (656)
+.
T Consensus 425 ~~ 426 (464)
T 3v7d_B 425 VH 426 (464)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-32 Score=299.62 Aligned_cols=258 Identities=26% Similarity=0.462 Sum_probs=228.4
Q ss_pred cCCCCCCceeEEEEeeCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCce
Q 006220 334 LSSAALPSVSFYTFINTHNG-LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412 (656)
Q Consensus 334 l~~~~~ps~~~~~~~~~~~~-V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (656)
.|.......+..++.+|.+. ++|+.| ++++|++|+.||.|++||+.+ ..
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~----------------------------~~ 153 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------KK 153 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------------------------TE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC----------------------------Cc
Confidence 44444444455678888887 466666 567999999999999999875 34
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe--cCCCEEEEEECCCcEEEE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSHDRTARIW 490 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~Dg~i~lw 490 (656)
....+.+|.++|++++|+|++ .|++|+.||+|++||+.++..+..+.+|..+|.+++|+ +++.++++|+.||+|++|
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 566678999999999999987 99999999999999999999999999999999999999 477899999999999999
Q ss_pred ECCCCce-----------------------eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC
Q 006220 491 SMDRIQP-----------------------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR 547 (656)
Q Consensus 491 d~~~~~~-----------------------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~ 547 (656)
|+.+... +..+.+|...|.++ +++++++++|+.||.|++||+++++++..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 9987652 45677888888887 5778999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
..|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++|+.||+|++||+.++.....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 999999999999999999999999999999999999999999999999998 57999999999999999998765543
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=293.49 Aligned_cols=255 Identities=20% Similarity=0.328 Sum_probs=217.0
Q ss_pred CceeEEEEeeCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220 340 PSVSFYTFINTHNGLNCASISQD---GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~d---g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (656)
|......+.+|.+.|+|++|+|+ |++|++|+.||.|+||++.... ......
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------~~~~~~ 81 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------QTIPKA 81 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------CEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------ceeEEE
Confidence 33444567788999999999999 6999999999999999987411 223366
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEE--ecCCCEEEEEECCCcEEEEECCC
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--NPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
+.+|.++|++++|+|++++|++|+.||+|++||+.++..+. ..+|..+|++++| +|++.+|++++.||.|++||+++
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 78899999999999999999999999999999999887665 5669999999999 88999999999999999999998
Q ss_pred CceeEEecCCC-----------------------------------------CCeeEEEEcCCCCE----EEEEECCCcE
Q 006220 495 IQPLRIMAGHL-----------------------------------------SDVDCVRWHINCNY----IATGSSDKTV 529 (656)
Q Consensus 495 ~~~~~~~~~~~-----------------------------------------~~V~~v~~~p~~~~----l~tgs~dg~V 529 (656)
++++..+..+. ..+.++++.++... +++|+.||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 88776665442 23445555544433 9999999999
Q ss_pred EEEeCCCC---eeEEEEecCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEE
Q 006220 530 RLWDVSSG---ECVRIFIGHRS------------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWT 594 (656)
Q Consensus 530 ~iwd~~~~---~~~~~~~~h~~------------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~ 594 (656)
++||++.. ..+..+.+|.. +|++++|+|++++|++|+.||.|++||+.+++++..+.+|...|++
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence 99999987 56777888776 7999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 595 LAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 595 l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
++|+|++.+|++|+.|+..+.|++...
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEECCCCCeEEEEecccccccccccCC
Confidence 999999999999999987666665443
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-33 Score=339.83 Aligned_cols=252 Identities=25% Similarity=0.389 Sum_probs=232.5
Q ss_pred ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
......+.+|.+.|+|++|||+|++||+|+.||.|+|||+.+ ......+.+|
T Consensus 605 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----------------------------~~~~~~~~~h 656 (1249)
T 3sfz_A 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----------------------------GEKLLDIKAH 656 (1249)
T ss_dssp CCCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------CCEEEEECCC
T ss_pred ccceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----------------------------CCEEEEeccC
Confidence 444567788999999999999999999999999999999875 2345667799
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCcee
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|++++|+| ++.++++|+.||+|++||+++++++
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 99999999999999999999999999999999999999999999999999999 5668999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------------
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------------------------------- 544 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------------------------------- 544 (656)
..+.+|...|.+++|+|+++++++|+.||+|++||+.++.....+.
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999999999999998775543321
Q ss_pred ---------------------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220 545 ---------------------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL 603 (656)
Q Consensus 545 ---------------------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 603 (656)
+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|.+.|++++|+|++.+
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence 67788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEeCCC
Q 006220 604 LASGSADCTVKLWDVTT 620 (656)
Q Consensus 604 l~sgs~Dg~I~iWd~~~ 620 (656)
|++++.||.|++|++.+
T Consensus 897 l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEEETTSCEEEEEHHH
T ss_pred EEEEeCCCeEEEEEccc
Confidence 99999999999999753
No 82
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=327.72 Aligned_cols=251 Identities=22% Similarity=0.383 Sum_probs=222.1
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.+.|+|++|+|++++|++|+.||.|+||++... .......+.+|.++|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------~~~~~~~l~~h~~~V~ 57 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------THKLIDTLTGHEGPVW 57 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------EEEEEEEECCCSSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------CCccceeccCCcCceE
Confidence 46789999999999999999999999999999998631 1345667889999999
Q ss_pred EEEEccC--CCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCC--ce
Q 006220 426 SASFSPL--GDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI--QP 497 (656)
Q Consensus 426 ~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~--~~ 497 (656)
+++|+|+ +++|++|+.||+|++||+.++. .+..+.+|..+|.+++|+|+ +.++++|+.||+|++||+++. ..
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 9999988 8999999999999999999886 67778889999999999999 999999999999999999876 34
Q ss_pred eEEecCCCCCeeEEEEcC-------------CCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCCCeEEEEEcCC--
Q 006220 498 LRIMAGHLSDVDCVRWHI-------------NCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMSPD-- 558 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-------------~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~~i~~l~~sp~-- 558 (656)
...+.+|...|.+++|+| ++.++++|+.||.|++||++++ .+...+.+|.++|++++|+|+
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence 556678999999999999 5899999999999999999887 566788899999999999999
Q ss_pred -CCEEEEEECCCcEEEEeCCCCe-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 559 -GRYMASGDEDGTIMMWDLASGR-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 559 -g~~L~s~~~dg~I~iwD~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|++|++|+.||.|++||+.++. .+.....|.+.|++++|+|+|.+|++|+.||.|++|++..+.
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 8999999999999999998864 333445688999999999999999999999999999998644
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-33 Score=304.72 Aligned_cols=255 Identities=20% Similarity=0.257 Sum_probs=210.6
Q ss_pred EEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 346 TFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
....|...|+|++|+| ++++||+|+.||.|+|||+.... ......+.+|.++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--------------------------~~~~~~~~gH~~~V 167 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------------------------KPTFIKGIGAGGSI 167 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--------------------------CCEEECCCSSSCCC
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--------------------------ceeEEEccCCCCCE
Confidence 4567788999999999 57899999999999999987421 22344567899999
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 425 YSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 425 ~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
++++|+| ++.+|++|+.||+|++||++++........ +...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 9999998 678999999999999999986654433333 344678999999999999999999999999975 566778
Q ss_pred cCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEE---EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 502 AGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~---~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
.+|...|.+++|+|++. ++++|+.|++|++||+++++.... ..+|..+|++++|+|+|++|++|+.||.|+|||+.
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 89999999999999876 788999999999999998765433 35799999999999999999999999999999999
Q ss_pred CCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCCceeec
Q 006220 578 SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSA------------DCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 578 ~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~------------Dg~I~iWd~~~~~~~~~~ 627 (656)
++.+...+..|.. .+....|+|++.++++++. ++.|++||+.++......
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9988887766642 2345678888877777653 357999999988766543
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-34 Score=304.89 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=209.8
Q ss_pred ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+++|+..... .+..++.+|.+.|++++|+|++++|++|+.||.|+|||+....
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----------------------- 88 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----------------------- 88 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----------------------------
T ss_pred CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-----------------------
Confidence 3467777665443 4445667889999999999999999999999999999987521
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeC-CCccEEEEEEecCCCEEEEEEC
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKG-HNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
.......+.+|.+.|.+++|+|++++|++|+.|++|++||+.++. ....+.+ |...|.+++|+|++.+|++|+.
T Consensus 89 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 89 --TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred --ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 012345567899999999999999999999999999999999877 3677777 9999999999999999999999
Q ss_pred CCcEEEEECCC------------------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee----EE
Q 006220 484 DRTARIWSMDR------------------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC----VR 541 (656)
Q Consensus 484 Dg~i~lwd~~~------------------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~----~~ 541 (656)
||+|++||+.. ++++..+ +|...|.+++|+|++++|++|+.||.|++||+.+++. +.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 99999999852 3455556 8999999999999999999999999999999999987 78
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--e-------------------------e---------Eee
Q 006220 542 IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--C-------------------------V---------TPL 585 (656)
Q Consensus 542 ~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~-------------------------~---------~~~ 585 (656)
.+.+|..+|.+++|+|+|++|++|+.++.+ +|+..... . . ..+
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 889999999999999999999998766655 67654211 0 0 001
Q ss_pred ----------------eCCCccEEEEEEcCC-CC---EEEEEECCCcEEEEeC
Q 006220 586 ----------------MGHTSCVWTLAYSCE-GS---LLASGSADCTVKLWDV 618 (656)
Q Consensus 586 ----------------~~h~~~V~~l~~s~~-~~---~l~sgs~Dg~I~iWd~ 618 (656)
..|.+.|+++++.+. +. .|+|||.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 138999999997654 33 6999999999999986
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-32 Score=281.75 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=186.6
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC--ceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw 490 (656)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+... ..+..+.+|..+|++++|++ ++.+|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 356789999999999999999999999999999999743 56788999999999999986 48999999999999999
Q ss_pred ECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCC------
Q 006220 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD------ 558 (656)
Q Consensus 491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~------ 558 (656)
|+++++ .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 56778889999999999997 8999999999999999998763 24667899999999999997
Q ss_pred -------CCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCCC
Q 006220 559 -------GRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEG---SLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 559 -------g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++|++|+.||.|++||++++. ....+.+|...|.+++|+|++ .+|++|+.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998765 667788999999999999984 899999999999999997643
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-32 Score=307.35 Aligned_cols=251 Identities=18% Similarity=0.255 Sum_probs=226.9
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSA 427 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l 427 (656)
.|.+.|++++|+||+++||+|+ ++.|+||++.+.. ........+.+|.+. |+++
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~------------------------~~~~~~~~~~~h~~~~v~~~ 70 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD------------------------SKVPPVVQFTGHGSSVVTTV 70 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSC------------------------CSSCSEEEECTTTTSCEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCC------------------------CccccceEEecCCCceEEEE
Confidence 4678899999999999999997 8899999987420 001345678899999 9999
Q ss_pred EEcc--CCCEEEEEeCCCeEEEEeccCC--------ceeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECC
Q 006220 428 SFSP--LGDFILSSSADTTIRLWSTKLN--------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMD 493 (656)
Q Consensus 428 ~~sp--d~~~L~s~s~Dg~I~lwd~~~~--------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~ 493 (656)
+|+| ++++|++|+.||+|++||+.++ ..+..+..|..+|.+++|+|++.++++++.+ +.|++||
T Consensus 71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-- 148 (615)
T 1pgu_A 71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-- 148 (615)
T ss_dssp EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--
T ss_pred EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--
Confidence 9999 9999999999999999999754 6677888899999999999999999999987 6888888
Q ss_pred CCceeEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEEEEecCCC---CeEEEEEcCC-CCEEEEEECC
Q 006220 494 RIQPLRIMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPD-GRYMASGDED 568 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~---~i~~l~~sp~-g~~L~s~~~d 568 (656)
.++.+..+.+|...|.+++|+|++. .+++++.|+.|++||+.+++++..+.+|.. .|++++|+|+ +++|++++.|
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 5678889999999999999999998 899999999999999999999999999999 9999999999 9999999999
Q ss_pred CcEEEEeCCCCeeeEee-e---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 569 GTIMMWDLASGRCVTPL-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~-~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+.+++.....
T Consensus 229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 290 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW 290 (615)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999999999999998 6 899999999999 9999999999999999999987765543
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-32 Score=295.35 Aligned_cols=247 Identities=18% Similarity=0.326 Sum_probs=214.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
...+++++|+...++ +|+.||.|+||++...+.. ......+.+|.++|++++|+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~~~~~~h~~~V~~~~~~p 91 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------------------------DKNVPLVCGHTAPVLDIAWCP 91 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------------------------CTTCCCBCCCSSCEEEEEECT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------------------------CCCCceEecCCCCEEEEEeCC
Confidence 345688888865544 5788999999998642110 112344678999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe-
Q 006220 432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM- 501 (656)
Q Consensus 432 -d~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~- 501 (656)
++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.+..+
T Consensus 92 ~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp TCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 8999999999999999999987 5678899999999999999998 79999999999999999999999999
Q ss_pred -cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCC-eEEEEEcCCCCEEEEE---ECCCcEEEEe
Q 006220 502 -AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSM-ILSLAMSPDGRYMASG---DEDGTIMMWD 575 (656)
Q Consensus 502 -~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~-i~~l~~sp~g~~L~s~---~~dg~I~iwD 575 (656)
.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+ .+|.+. +.++.|+|+|++|++| +.|+.|++||
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 889999999999999999999999999999999999999988 788876 8999999999999999 7899999999
Q ss_pred CCCCee-eEeee-CCCccEEEEEEcCCCCEEEE-EECCCcEEEEeCCCCCc
Q 006220 576 LASGRC-VTPLM-GHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTK 623 (656)
Q Consensus 576 ~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~~~~ 623 (656)
++++.. +.... .|...|.+++|+|++++|++ |+.||.|++||+.+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 988764 33333 57788999999999999975 45799999999988764
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-31 Score=288.68 Aligned_cols=247 Identities=21% Similarity=0.280 Sum_probs=212.5
Q ss_pred EEeeCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 346 TFINTHNG--LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 346 ~~~~~~~~--V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
...++... +.+++|++ ..+++++.||.|++|++.... ........|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~---------------------------~~~~~~~~~~~~ 136 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS---------------------------VSALAETDESTY 136 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC---------------------------EEEEEECCTTCC
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc---------------------------EeEeeecCCCCC
Confidence 33345444 55666665 557778899999999987521 111222348899
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEec
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMA 502 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~ 502 (656)
|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++|+.||.|++||++ ....+..+.
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 9999999999999999999999999999999999999999999999994 6799999999999999998 566788888
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG 579 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~--~dg~I~iwD~~~~ 579 (656)
+|...|.+++|+|++++|++|+.||.|++||++++.++..+.+|...|.+++|+|++. ++++|+ .||.|++||+.++
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999765 566654 7999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCce
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKV 624 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~ 624 (656)
+++..+. |...|.+++|+|++.++++++ .||.|++||+.++...
T Consensus 295 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 295 ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 9988885 567899999999999999954 8999999999875443
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.7e-33 Score=303.66 Aligned_cols=268 Identities=17% Similarity=0.221 Sum_probs=217.5
Q ss_pred hccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 328 LRNRVHLSSAALPS-VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 328 ~~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
....|++|+..... .+.+.+.+|.+.|+|++|+| ++.+|++|+.||+|+|||+....
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~--------------------- 198 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI--------------------- 198 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE---------------------
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---------------------
Confidence 35689999876553 45566778999999999998 68999999999999999986411
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECC
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHD 484 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~D 484 (656)
.........+...+.+++|+|++.+|++|+.||+|++||++ +..+..+.+|..+|.+++|+|++. +|++|+.|
T Consensus 199 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 199 -----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp -----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred -----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 11111222344568899999999999999999999999997 456777889999999999999875 78899999
Q ss_pred CcEEEEECCCCceeEE---ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC------CeEEEEE
Q 006220 485 RTARIWSMDRIQPLRI---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS------MILSLAM 555 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~---~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~------~i~~l~~ 555 (656)
++|++||+++.+.... ..+|...|.+++|+|++++|++|+.||+|++||+.++.+...+..|.. .+....|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999987664433 357999999999999999999999999999999999998888776653 2345678
Q ss_pred cCCCCEEEEEE------------CCCcEEEEeCCCCeeeEeee-CCCccEEEE-EEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 556 SPDGRYMASGD------------EDGTIMMWDLASGRCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 556 sp~g~~L~s~~------------~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l-~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++..+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 88887777764 23579999999999988875 677888887 6999999999876 889999999886
Q ss_pred Cc
Q 006220 622 TK 623 (656)
Q Consensus 622 ~~ 623 (656)
+.
T Consensus 432 k~ 433 (435)
T 4e54_B 432 RT 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 53
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.6e-32 Score=292.25 Aligned_cols=261 Identities=29% Similarity=0.576 Sum_probs=226.3
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.++..+|+|++| ++++|++|+.||.|++||+.+ ......+.+|.++|.++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~----------------------------~~~~~~~~~h~~~v~~l 179 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT----------------------------LECKRILTGHTGSVLCL 179 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS----------------------------CCEEEEECCCSSCEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC----------------------------CeEEEEEcCCCCcEEEE
Confidence 455677999887 799999999999999999875 23456678999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---EEecCC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---RIMAGH 504 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~---~~~~~~ 504 (656)
+| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||+|++||+.++... ..+.+|
T Consensus 180 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 180 QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 99 68899999999999999999999999999999999999997 459999999999999999987765 677899
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~ 584 (656)
...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.++.|+ ++++++|+.||.|++||+++++++..
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999 78899999999999999999999999999999999999995 78999999999999999999999999
Q ss_pred eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV 654 (656)
Q Consensus 585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F 654 (656)
+.+|...|.+++| ++.+|++|+.||.|++||+.++..... ......+..+..+..+|.+++|
T Consensus 332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~ 393 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQF 393 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEE
T ss_pred EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccCCCCCeEEEEe
Confidence 9999999999999 788999999999999999876542110 0011133445566667777666
No 91
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.9e-32 Score=288.78 Aligned_cols=234 Identities=29% Similarity=0.489 Sum_probs=193.4
Q ss_pred eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE---------
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--------- 482 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--------- 482 (656)
.....+.+|.++|++++|+|++++|++|+.||+|++||+.++.....+..|...|.+++|+|+|.+|++|+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 45677899999999999999999999999999999999999988888888888888888877766555554
Q ss_pred -----------------------------------------CCCcEEEEECCCCceeEEe-----cCCCCCeeEEEEcC-
Q 006220 483 -----------------------------------------HDRTARIWSMDRIQPLRIM-----AGHLSDVDCVRWHI- 515 (656)
Q Consensus 483 -----------------------------------------~Dg~i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p- 515 (656)
.|++|++||+.+++.+..+ .+|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 4555555555555555555 57888999999987
Q ss_pred CCCEEEEEECCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-----
Q 006220 516 NCNYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----- 589 (656)
Q Consensus 516 ~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~----- 589 (656)
++++|++|+.|++|++||++ .+.++..+.+|.+.|.+++|+|+|++|++|+.||+|++||+++++++..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 88999999999999999998 567888999999999999999999999999999999999999999988876543
Q ss_pred --ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 590 --SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 590 --~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
..|++++|+|+|.+|++|+.||.|++||+..++....... ....+..+|.+++|++
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-----------LQNSHEGRISCLGLSS 354 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC-----------SCSSCCCCCCEEEECS
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec-----------ccCCCCCceEEEEECC
Confidence 2489999999999999999999999999987765433211 1134556666666653
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.9e-31 Score=286.15 Aligned_cols=258 Identities=27% Similarity=0.536 Sum_probs=232.1
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... .+..++.+|.+.|++++|+ +++|++|+.||.|++||+..
T Consensus 138 dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-------------------------- 188 (445)
T 2ovr_B 138 DNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-------------------------- 188 (445)
T ss_dssp TSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------------------
T ss_pred CCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------------------
Confidence 457888876543 3456778899999999997 67999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
......+.+|.+.|.++.|+ +..+++|+.||+|++||+.+++.+..+.+|..+|.+++| ++.++++|+.||.|+
T Consensus 189 --~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 189 --GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp --TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred --CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 23556677899999999996 678999999999999999999999999999999999999 688999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+||+++++++..+.+|...|.+++| ++.++++|+.||.|++||+++++++..+.+|...+.++.++ +++|++|+.|
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 338 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred EEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence 9999999999999999999999999 78899999999999999999999999999999999988875 6799999999
Q ss_pred CcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 569 GTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|.|++||+.+++++..+.+ |...|.+++|+ +.+|++|+.||.|++||+.+++.....
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 9999999999999999886 88999999996 579999999999999999998766543
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-32 Score=295.91 Aligned_cols=272 Identities=15% Similarity=0.214 Sum_probs=225.6
Q ss_pred ccceecCCCCCCc---eeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAALPS---VSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~ps---~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+.+|+..... .....+.+|.+.|++++|+| ++++||+|+.||.|+||++.......
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------- 118 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------- 118 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----------------
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----------------
Confidence 3466677543321 12234567899999999999 99999999999999999987532110
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sg 481 (656)
........+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|++.+|+++
T Consensus 119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 0013456678999999999999998 69999999999999999999999888 7899999999999999999999
Q ss_pred ECCCcEEEEECCCCceeEEe-cCCCCC-eeEEEEcCCCCEEEEE---ECCCcEEEEeCCCCee-EEEEe-cCCCCeEEEE
Q 006220 482 SHDRTARIWSMDRIQPLRIM-AGHLSD-VDCVRWHINCNYIATG---SSDKTVRLWDVSSGEC-VRIFI-GHRSMILSLA 554 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~-~~~~~~-V~~v~~~p~~~~l~tg---s~dg~V~iwd~~~~~~-~~~~~-~h~~~i~~l~ 554 (656)
+.||.|++||+++++.+..+ .+|.+. +.++.|+|++.+|++| +.|+.|++||++++.. +.... .|...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999888 788776 8999999999999999 7899999999998764 33333 5778899999
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCCCCee-eEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 555 MSPDGRYMASG-DEDGTIMMWDLASGRC-VTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 555 ~sp~g~~L~s~-~~dg~I~iwD~~~~~~-~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|+|++++|+++ +.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999999754 4799999999998874 444443 5589999999999988775 567999999987643
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-31 Score=311.89 Aligned_cols=267 Identities=23% Similarity=0.374 Sum_probs=237.2
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... ....++..|.+.|++++|+|++++||+|+.||.|+||++.+
T Consensus 34 ~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-------------------------- 86 (814)
T 3mkq_A 34 SGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-------------------------- 86 (814)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 356888876543 34456778899999999999999999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~ 486 (656)
......+.+|.+.|.+++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++..|++++.||+
T Consensus 87 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 87 --GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred --CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 2345667889999999999999999999999999999999987 66778889999999999999 8899999999999
Q ss_pred EEEEECCCCceeEEecCCC-CCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 487 ARIWSMDRIQPLRIMAGHL-SDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
|++||+.++.+...+..+. ..+.+++|+| ++.++++|+.||.|++||+++++++..+.+|...|++++|+|+|++|+
T Consensus 165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 9999999888877776554 8899999999 999999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE-EEEEECCCcEEEEeCCCCCce
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+++.||.|++||+.+++.+..+..|...|++++|+|++.. +++++.|+.+.+|++......
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce
Confidence 9999999999999999999999999999999999999873 244455778999998775543
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.9e-32 Score=292.16 Aligned_cols=255 Identities=26% Similarity=0.558 Sum_probs=222.8
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+.... .+..++.+|.+.|+|++| ++++|++|+.||.|++||+.+
T Consensus 152 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-------------------------- 202 (435)
T 1p22_A 152 DNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-------------------------- 202 (435)
T ss_dssp SSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------
T ss_pred CCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------
Confidence 457788876543 345567789999999999 789999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee---EEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg 485 (656)
......+.+|.+.|.+++|+ +..+++|+.||+|++||+.++... ..+.+|..+|.+++| ++.++++|+.||
T Consensus 203 --~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 203 --GEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp --CCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred --CcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 23456677899999999997 469999999999999999988765 667889999999999 688999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
+|++||+++++.+..+.+|...|.+++|+ ++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++|
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 99999999999999999999999999994 679999999999999999999999999999999999999 68999999
Q ss_pred ECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 566 DEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+.||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||+|++||+.+....
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 999999999997766 78889999999999999 6789999999999999999886544
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=291.79 Aligned_cols=265 Identities=13% Similarity=0.106 Sum_probs=210.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---cccccccCCCC----CC--CCCCccccCCC--------------
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG---QQAVSSGLQGE----ND--TTPREDIIGPN-------------- 408 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~---~~~~~~~~~~~----~~--~~~~~~~~~~~-------------- 408 (656)
.++.|++|++||++|+++ .++.|++||+.++. ........... .. ...........
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977766 67899999987755 21111100000 00 00000000000
Q ss_pred ------CCceeeEEeecCccCEEEEEEccCCCEE-EEEeCCCeEEEEecc--CCceeEEee--CCCccEEEEEEecCCCE
Q 006220 409 ------GRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTK--LNANLVCYK--GHNYPVWDVQFNPQGHY 477 (656)
Q Consensus 409 ------~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~--~~~~~~~~~--~h~~~V~~l~~sp~~~~ 477 (656)
..........+|.+.|++++|+|++++| ++|+.||+|++||+. ++..+..+. .|...|.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 0000111234678899999999999996 899999999999999 888887776 56788999999999999
Q ss_pred EEEEECCCcEEEEECCCCceeE----EecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCC
Q 006220 478 FASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSM 549 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~ 549 (656)
|++|+.+|.+++|++.+..... .+.+|...|.+++|+|+ +++|++|+.|++|++||++++.++.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998776544 67789999999999999 99999999999999999999998887 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-------------------------CccEEEEEEcCCCCEE
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------------------------TSCVWTLAYSCEGSLL 604 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-------------------------~~~V~~l~~s~~~~~l 604 (656)
|.+++|+ +|++|++|+.||.|++||+.+++++..+..+ ...|.+++|+|++++|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999999 9999999999999999999999988887632 3579999999999999
Q ss_pred EEEE-CCCcEEEEeC
Q 006220 605 ASGS-ADCTVKLWDV 618 (656)
Q Consensus 605 ~sgs-~Dg~I~iWd~ 618 (656)
++++ .|+.|+||++
T Consensus 323 ~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 323 AFFVEATKCIIILEM 337 (450)
T ss_dssp EEEETTCSEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 9999 8999999999
No 97
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-31 Score=323.75 Aligned_cols=267 Identities=24% Similarity=0.418 Sum_probs=233.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+..... +..++.+|.+.|+|++|+|++++||+|+.||.|+|||+.+
T Consensus 636 d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------- 688 (1249)
T 3sfz_A 636 DKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------------- 688 (1249)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------
T ss_pred CCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 4578888765443 4557778999999999999999999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEcc--CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
......+.+|.+.|.+++|+| ++.++++|+.||+|++||+.++.++..+.+|..+|++++|+|++.++++|+.||+
T Consensus 689 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 --GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred --CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 235566789999999999999 4558999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEe-------------------------------------------------------cCCCCCeeEE
Q 006220 487 ARIWSMDRIQPLRIM-------------------------------------------------------AGHLSDVDCV 511 (656)
Q Consensus 487 i~lwd~~~~~~~~~~-------------------------------------------------------~~~~~~V~~v 511 (656)
|++||+.++.....+ .+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999998765433221 2678889999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--------------
Q 006220 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-------------- 577 (656)
Q Consensus 512 ~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~-------------- 577 (656)
+|+|++.++++|+.||.|++||+.++..+..+.+|.+.|++++|+|+|++|++++.||.|++||+.
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 999999999999999999999999999999999999999999999999999999999988888743
Q ss_pred -----------------------------------------------------------------CCeeeEeeeCCCccE
Q 006220 578 -----------------------------------------------------------------SGRCVTPLMGHTSCV 592 (656)
Q Consensus 578 -----------------------------------------------------------------~~~~~~~~~~h~~~V 592 (656)
+++.+..+.+|.+.|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 233444556788999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
++++|+|+|++|++++.||.|++||+.++...
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 99999999999999999999999999887654
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.1e-31 Score=296.58 Aligned_cols=273 Identities=15% Similarity=0.177 Sum_probs=239.0
Q ss_pred ccceecCCCCCC---ceeEEEEeeCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 329 RNRVHLSSAALP---SVSFYTFINTHNG-LNCASISQ--DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 329 ~~~v~l~~~~~p---s~~~~~~~~~~~~-V~~l~fs~--dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
...+.+|+...+ ......+.+|.+. |+|++|+| ++++||+|+.||.|+||++........
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------- 103 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-------------- 103 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc--------------
Confidence 456788876533 1456677889999 99999999 999999999999999999863110000
Q ss_pred cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-E
Q 006220 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-Y 477 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~ 477 (656)
........+.+|.++|.+++|+|++++|++++.+ +.|++|| ++..+..+.+|...|++++|+|++. .
T Consensus 104 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 104 ------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp ------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred ------ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcE
Confidence 0123556677899999999999999999999988 6899998 5778888999999999999999998 8
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCCCC---CeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEE-e---cCCCC
Q 006220 478 FASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF-I---GHRSM 549 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~-~---~h~~~ 549 (656)
+++++.|+.|++||+.+.+.+..+.+|.. .|.+++|+|+ +++|++|+.||.|++||+++++.+..+ . +|...
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 99999999999999999999999999999 9999999999 999999999999999999999999998 6 89999
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
|.+++|+ ++++|++++.||.|++||+.+++.+..+..+ ...+.++.|+ ++.++++++.||.|++||+.++....
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEE
Confidence 9999999 9999999999999999999999999998877 3678889886 88999999999999999998765443
No 99
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-30 Score=283.58 Aligned_cols=241 Identities=29% Similarity=0.602 Sum_probs=218.6
Q ss_pred EEeeCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 346 TFINTHNGL-NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 346 ~~~~~~~~V-~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.+.+|.+.| +|+. +++++|++|+.||.|++||+.+ ......+.+|.++|
T Consensus 113 ~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~----------------------------~~~~~~~~~h~~~v 162 (445)
T 2ovr_B 113 VLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT----------------------------GKCLRTLVGHTGGV 162 (445)
T ss_dssp EEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT----------------------------CCEEEECCCCSSCE
T ss_pred EecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC----------------------------CcEEEEEcCCCCCE
Confidence 467787764 5544 5689999999999999999875 23456677999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
.+++|+ +..+++|+.||+|++||+.+++.+..+.+|..+|.++.|+ +..+++|+.||+|++||+.+++.+..+.+|
T Consensus 163 ~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 163 WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999998 6799999999999999999999999999999999999996 578999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~ 584 (656)
...|.+++| +++++++|+.||.|++||+++++++..+.+|...|.++.| ++.++++|+.||.|++||+.+++++..
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999 7889999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
+.+|...+.++.++ ++++++|+.||.|++||+.+++....
T Consensus 315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 99999999988875 67999999999999999988765543
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-31 Score=276.26 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=222.0
Q ss_pred ccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc-CCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDM-AKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+++|+..... .....+..|...|++++|+|+++ +|++|+.||.|++|++ ...
T Consensus 32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------------------- 90 (342)
T 1yfq_A 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------------------- 90 (342)
T ss_dssp TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------
T ss_pred CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------
Confidence 4567788654433 33455668899999999999999 9999999999999998 641
Q ss_pred cCCCCCceeeEEeec--CccCEEEEEEccCCCEEEEEeCCCeEEEEeccC---------CceeEEeeCCCccEEEEEEec
Q 006220 405 IGPNGRKRSYTLYQG--HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL---------NANLVCYKGHNYPVWDVQFNP 473 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~--h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~---------~~~~~~~~~h~~~V~~l~~sp 473 (656)
....+.+ |...|.+++|+| +..|++++.||.|++||+.+ ++.+..+. |...|.+++|+|
T Consensus 91 --------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 91 --------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp --------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred --------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 2245667 999999999999 99999999999999999987 66666666 889999999998
Q ss_pred CCCEEEEEECCCcEEEEECCC-Cc--eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC------eeEEEE
Q 006220 474 QGHYFASSSHDRTARIWSMDR-IQ--PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG------ECVRIF 543 (656)
Q Consensus 474 ~~~~l~sgs~Dg~i~lwd~~~-~~--~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~------~~~~~~ 543 (656)
++ +++++.|+.|++||+++ .. .......|...|.+++|+| +++++++|+.||.|++||+..+ +....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999988 44 3445557888999999999 9999999999999999999887 788888
Q ss_pred ecCCC---------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCc-
Q 006220 544 IGHRS---------MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCT- 612 (656)
Q Consensus 544 ~~h~~---------~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~- 612 (656)
.+|.. .|.+++|+|++++|++|+.||.|++||+.+++++..+.+| .+.|++++ |++.+|++|+.||.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 88865 9999999999999999999999999999999999999998 99999999 99999999999998
Q ss_pred EEEEeC
Q 006220 613 VKLWDV 618 (656)
Q Consensus 613 I~iWd~ 618 (656)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555543
No 101
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4e-32 Score=282.56 Aligned_cols=207 Identities=26% Similarity=0.375 Sum_probs=179.4
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw 490 (656)
..+.+|.++|++++|+|++++|++|+.|++|++||+.++. .+..+.+|..+|++++|++ ++.+|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467899999999999999999999999999999998775 4567889999999999986 48999999999999999
Q ss_pred ECCCC--ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCee---EEEEecCCCCeEEEEEcCC-----
Q 006220 491 SMDRI--QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD----- 558 (656)
Q Consensus 491 d~~~~--~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~----- 558 (656)
|++++ .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99876 456778899999999999997 78999999999999999987632 3455689999999999997
Q ss_pred ------------CCEEEEEECCCcEEEEeCCCC---eeeEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEEEeCC
Q 006220 559 ------------GRYMASGDEDGTIMMWDLASG---RCVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVT 619 (656)
Q Consensus 559 ------------g~~L~s~~~dg~I~iwD~~~~---~~~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iWd~~ 619 (656)
+++|++|+.|+.|++||+..+ +++..+.+|...|.+++|+|++ .+|++|+.||+|++|++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999765 4677888999999999999986 899999999999999997
Q ss_pred CC
Q 006220 620 TS 621 (656)
Q Consensus 620 ~~ 621 (656)
..
T Consensus 247 ~~ 248 (316)
T 3bg1_A 247 DA 248 (316)
T ss_dssp ST
T ss_pred Cc
Confidence 63
No 102
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-31 Score=312.14 Aligned_cols=295 Identities=14% Similarity=0.154 Sum_probs=221.8
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+...... ..++ .+.+.|++++|+|++++|++|+.||.|++||+.......... +.
T Consensus 78 D~~v~lWd~~~~~~-~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i----------------~~ 139 (902)
T 2oaj_A 78 KDTVYVLSLYSQKV-LTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL----------------DN 139 (902)
T ss_dssp TCEEEEEETTTCSE-EEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE----------------CC
T ss_pred cCeEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee----------------cc
Confidence 46788998765432 3333 467889999999999999999999999999987532110000 00
Q ss_pred CCceee-EEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCceeEEeeCC------------------CccEEE
Q 006220 409 GRKRSY-TLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGH------------------NYPVWD 468 (656)
Q Consensus 409 ~~~~~~-~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h------------------~~~V~~ 468 (656)
.... ..+.+|.++|.+++|+|+ +..+++|+.||+| +||++++..+..+..| ...|++
T Consensus 140 --~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 140 --LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp --HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred --ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 0000 234679999999999996 4689999999999 9999999888887765 467999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceeEE--ec---C-------------CCCCeeE--------------------
Q 006220 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRI--MA---G-------------HLSDVDC-------------------- 510 (656)
Q Consensus 469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~--~~---~-------------~~~~V~~-------------------- 510 (656)
++|+|+|.+|++|+.||+|++||+++++++.. +. + |...|.+
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999999999999999999865443221 00 0 0001111
Q ss_pred --------------------------------------------------------------------------------
Q 006220 511 -------------------------------------------------------------------------------- 510 (656)
Q Consensus 511 -------------------------------------------------------------------------------- 510 (656)
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence
Q ss_pred ----------------------------------------------------------------EEEcCCCCEEEEEECC
Q 006220 511 ----------------------------------------------------------------VRWHINCNYIATGSSD 526 (656)
Q Consensus 511 ----------------------------------------------------------------v~~~p~~~~l~tgs~d 526 (656)
++|+|++++|++|+.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence 1224566778888888
Q ss_pred CcEEEEeCCCCeeE--EEE----e-----cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----------------
Q 006220 527 KTVRLWDVSSGECV--RIF----I-----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG---------------- 579 (656)
Q Consensus 527 g~V~iwd~~~~~~~--~~~----~-----~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~---------------- 579 (656)
++|++||+.++... ..+ . +|...|.+++|+|+|++||+|+.||+|+|||+.++
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence 88888888776321 111 1 78889999999999999999999999999999766
Q ss_pred -----------------------------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220 580 -----------------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630 (656)
Q Consensus 580 -----------------------------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 630 (656)
+++..+.+|.+.|++++|||+| +||+|+.|++|++||+.....+...
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~--- 612 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME--- 612 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEe---
Confidence 2467788899999999999999 9999999999999998765443210
Q ss_pred cCCcccccccccc-CCCCCeEEEEEc
Q 006220 631 SGTNRLRSLKTLP-TKSTPVYSLQVL 655 (656)
Q Consensus 631 ~~~~~~~~l~~~p-~~~~pv~sv~Ft 655 (656)
.+..+. .++..|.+|+|+
T Consensus 613 -------~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 613 -------NIREISGAQSACVTCIEFV 631 (902)
T ss_dssp -------EGGGTCSSCCCCEEEEEEE
T ss_pred -------ehhHhccccccceEEEEEE
Confidence 123454 788889999997
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=291.17 Aligned_cols=248 Identities=10% Similarity=0.183 Sum_probs=211.2
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CCcccccccCCCCCCCCCCccccCCCCCceeeEEe--ec--Cc
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK---LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QG--HS 421 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~--h~ 421 (656)
.|.+.|+|++|+|++++|++|+.||.|++||+.. ....... .......+ .. +.
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL--------------------NCECIRKINLKNFGKN 168 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE--------------------EEEEEEEEEGGGGSSC
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc--------------------ccceeEEEEccCcccc
Confidence 5889999999999999999999999999999852 1110000 00111111 12 66
Q ss_pred cCEEEEE--EccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 422 GPVYSAS--FSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 422 ~~V~~l~--~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
..+.++. +++++.+|++|+.||+|++||+.+++.+..+.+ |...|.+++|+|++.+|++|+.||+|++||++++++
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 7788888 668899999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred eEEec-CCCCCeeEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeEEEEecC--------------------------
Q 006220 498 LRIMA-GHLSDVDCVRWHI----NCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------------------- 546 (656)
Q Consensus 498 ~~~~~-~~~~~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------------------- 546 (656)
+..+. .|...|.+++|+| ++.+|++|+.||.|++||+++++++..+.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 98886 7888999997664 6779999999999999999999999888754
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC-------------------------------------CC
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-------------------------------------HT 589 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-------------------------------------h~ 589 (656)
...|++++|+ ++++|++|+.||.|++||+.+++++..+.+ |.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 4457888999 779999999999999999999887777765 88
Q ss_pred ccEEEEEEcCC--CCEEEEEECCCcEEEEe
Q 006220 590 SCVWTLAYSCE--GSLLASGSADCTVKLWD 617 (656)
Q Consensus 590 ~~V~~l~~s~~--~~~l~sgs~Dg~I~iWd 617 (656)
..|++++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 99999999998 78999999999999995
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.4e-31 Score=286.66 Aligned_cols=287 Identities=16% Similarity=0.238 Sum_probs=215.4
Q ss_pred ccceecCCCCCCc----------eeEEEEeeCC------------CCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCC
Q 006220 329 RNRVHLSSAALPS----------VSFYTFINTH------------NGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLG 384 (656)
Q Consensus 329 ~~~v~l~~~~~ps----------~~~~~~~~~~------------~~V~~l~fs~dg--~~La~g~~dg~I~Iwdl~~~~ 384 (656)
...+++|+..... .+...+.+|. +.|++++|+|++ .+|++|+.||.|++|++....
T Consensus 49 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~ 128 (447)
T 3dw8_B 49 GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERD 128 (447)
T ss_dssp TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccccc
Confidence 3567777654332 1455677787 889999999998 899999999999999987532
Q ss_pred cccccccCCCCCCC----CCCccccCCC-------CCceee-EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220 385 QQAVSSGLQGENDT----TPREDIIGPN-------GRKRSY-TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (656)
Q Consensus 385 ~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~-~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~ 452 (656)
.............. ........+. ...... ....+|...|++++|+|++++|++| .||+|++||+.+
T Consensus 129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 207 (447)
T 3dw8_B 129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI 207 (447)
T ss_dssp EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence 21110000000000 0000000000 000111 2246899999999999999999998 799999999984
Q ss_pred Cc-eeE-------EeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCce----eEEecCCCC------------C
Q 006220 453 NA-NLV-------CYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP----LRIMAGHLS------------D 507 (656)
Q Consensus 453 ~~-~~~-------~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~~~~------------~ 507 (656)
.. .+. .+.+|...|.+++|+|++ .+|++|+.||+|++||+++++. +..+.+|.. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 33 333 255799999999999998 9999999999999999998886 788888876 8
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCC---------------eEEEEEcCCCCEEEEEECCCcE
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSM---------------ILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~---------------i~~l~~sp~g~~L~s~~~dg~I 571 (656)
|.+++|+|++++|++++. +.|++||+++ ++++..+.+|... +..++|+|+|++|++|+.||.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 999999999999999999 9999999997 8888889888642 3349999999999999999999
Q ss_pred EEEeCCCCeeeEeee---------------------------------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 572 MMWDLASGRCVTPLM---------------------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 572 ~iwD~~~~~~~~~~~---------------------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
++||+.+++.+. +. .+...|.+++|+|++++||+++.++ +++|.-
T Consensus 367 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 367 RMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred EEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 999999887653 22 2345788999999999999998775 778864
Q ss_pred C
Q 006220 619 T 619 (656)
Q Consensus 619 ~ 619 (656)
+
T Consensus 445 ~ 445 (447)
T 3dw8_B 445 K 445 (447)
T ss_dssp C
T ss_pred c
Confidence 3
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-30 Score=277.64 Aligned_cols=257 Identities=22% Similarity=0.394 Sum_probs=218.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
+++++||++ ++||+|. |++|+|||..++. ......+.+|...|++|+|+|+|
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--------------------------~~~~~~~~~~~~~V~sv~fspdg 159 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG 159 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCcEEEEEECCCC
Confidence 789999975 5888885 9999999987521 12233456788999999999999
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~ 512 (656)
++|++|+.||+|++||+.+++.+..+.+|...+.+++|+ +.++++|+.|+.+++||.... ..+..+.+|...+.++.
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999999999999999999999999999999999988875 679999999999999998764 45677889999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCCC-EEEEE--ECCCcEEEEeCCCCeeeEee
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGR-YMASG--DEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g~-~L~s~--~~dg~I~iwD~~~~~~~~~~ 585 (656)
|+|++.++++++.|+.|++||..+++ .+.....|...|.+++|+|++. +++++ +.|+.|++||+.+++++..+
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 99999999999999999999998765 3567788999999999999654 55554 47999999999999999888
Q ss_pred eCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
..| ..+.++.|++++..+++++ .||.|+|||+.+++.+ ..+.+|..+|.+|+|++
T Consensus 318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v---------------~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---------------AELKGHTSRVLSLTMSP 374 (420)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---------------EEECCCSSCEEEEEECT
T ss_pred ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE---------------EEEcCCCCCEEEEEEcC
Confidence 765 4688999999999988876 7899999999886643 34556777788888764
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.5e-30 Score=275.08 Aligned_cols=209 Identities=25% Similarity=0.395 Sum_probs=190.5
Q ss_pred eEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEE
Q 006220 414 YTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARI 489 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~l 489 (656)
...+.+|.++|++++|+|++++|++|+.||+|++|++. ++..+..+.+|..+|++++|+++ +.+|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 55667788899999999999977 999999999999999
Q ss_pred EECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcC------
Q 006220 490 WSMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSP------ 557 (656)
Q Consensus 490 wd~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp------ 557 (656)
||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999887 77788889999999999999 9999999999999999999873 4556778999999999999
Q ss_pred -------CCCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 006220 558 -------DGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 558 -------~g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
++.+|++|+.||.|++||++++. .+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.++.
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 69999999999999999998764 45677789999999999999 8999999999999999998864
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.5e-30 Score=270.47 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=192.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+...|.+.|+|++|||||++||+|+.+| ++||++... ..... .+...+.
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----------------------------~~~~~--~~~~~~~ 62 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----------------------------AHIMS--QEMRHLS 62 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----------------------------EEEEE--EECSCCC
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----------------------------ceeee--eecCCeE
Confidence 4567889999999999999999997765 789997641 11111 1222477
Q ss_pred EEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220 426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (656)
Q Consensus 426 ~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~ 503 (656)
.+++.++++.+ ++++.|++|++||+.+++.+..+. +..+|.+++|+++. ++++ .|+.|++||+.+. +.+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 88898888877 577888999999999999988887 66799999998764 4444 4789999999987 66555544
Q ss_pred CCCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCe----------------eEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 504 HLSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGE----------------CVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~t--gs~dg~V~iwd~~~~~----------------~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
....+++++ .++++ |+.||.|++||+.++. ++..+.+|.++|++++|+|+|++|++|
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 445566777 56666 5789999999999876 278889999999999999999999999
Q ss_pred ECCCc-EEEEeCCCCeeeEeee-C-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 566 DEDGT-IMMWDLASGRCVTPLM-G-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 566 ~~dg~-I~iwD~~~~~~~~~~~-~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+.||+ |++||+.+++++..+. + |.+.|++++|+|++++|++++.|++|++||+..+.
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 99998 9999999999999998 5 99999999999999999999999999999998764
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=274.88 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=192.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEE
Q 006220 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS 438 (656)
Q Consensus 359 fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s 438 (656)
+.+++.+|++|+.||.|++||+..... ...+. ...|.++.|+|+ +++
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~----------------------------~~~~~--~~~v~~~~~~~~---~~s 90 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKT----------------------------ITTIT--TPNPRTGGEHPA---IIS 90 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSC----------------------------EEEEE--EECCCTTCCCCS---EEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcE----------------------------EEEEe--cCCceeeeeCCc---eEE
Confidence 446789999999999999999875221 11122 467888889887 999
Q ss_pred EeCCCeEEEEecc---------CCceeEEee-CCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEec-CCC
Q 006220 439 SSADTTIRLWSTK---------LNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMA-GHL 505 (656)
Q Consensus 439 ~s~Dg~I~lwd~~---------~~~~~~~~~-~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~ 505 (656)
|+.|++|++|+.. ++..+..+. +|..+|.+++|+| ++.+|++|+.||+|++||+++++.+.... .|.
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 9999999999765 444444444 6778999999999 99999999999999999999998877764 455
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE-EEEec-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV-RIFIG-HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~-~~~~~-h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
..|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.+.
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 58999999999999999999999999999999988 78888 999999999999999999999 5599999999987766
Q ss_pred eeeC---CCccEE--EEEEcCCCCEEEEEEC-CCcEEEEeCCCCCceee
Q 006220 584 PLMG---HTSCVW--TLAYSCEGSLLASGSA-DCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 584 ~~~~---h~~~V~--~l~~s~~~~~l~sgs~-Dg~I~iWd~~~~~~~~~ 626 (656)
.+.. |...+. +++|+|+|++|++++. |+.|+||++........
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 5543 434444 6999999999999998 99999999977655443
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.2e-30 Score=277.82 Aligned_cols=242 Identities=19% Similarity=0.379 Sum_probs=204.8
Q ss_pred eEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCCC-EEEEE
Q 006220 414 YTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGH-YFASS 481 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~~-~l~sg 481 (656)
.....+|.+.|++++|+|+ +.+|++++.||.|++|++.. ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 4566789999999999997 67899999999999999987 567888899999999999999988 99999
Q ss_pred ECCCcEEEEECCCCce-------eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCe
Q 006220 482 SHDRTARIWSMDRIQP-------LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMI 550 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~-------~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i 550 (656)
+.||+|++|++..... ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987322 566778999999999999 7889999999999999999987 5777888999999
Q ss_pred EEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCceeec
Q 006220 551 LSLAMSPDGR-YMASGDEDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 551 ~~l~~sp~g~-~L~s~~~dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++++|+|++. +|++|+.||.|++||+++ +.++..+.+|.+.|++++|+|++. +|++++.||.|+|||+.........
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999987 788999999999999998 567888999999999999999984 7999999999999999874332211
Q ss_pred ccccCCccccccccccCCCCCeEEEEEcC
Q 006220 628 EEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 628 ~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.. ........+..+..+..+|.+++|++
T Consensus 361 ~~-~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 361 ED-AEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp HH-HHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred cc-cccCCcceEEEcCCCCCCceEEEECC
Confidence 10 01112234556667777888888864
No 110
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-30 Score=301.62 Aligned_cols=243 Identities=14% Similarity=0.166 Sum_probs=207.1
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.....+|.+.|+|++|+|++++||+|+.||.|+||+.... .......|..+
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----------------------------~~~~~~~~~~~ 60 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----------------------------EVVIKLEDRSA 60 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----------------------------EEEEECSSCCC
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----------------------------EEEEEcCCCCC
Confidence 3455688999999999999999999999999999997531 11222357889
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-----
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL----- 498 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~----- 498 (656)
|.+++|+| +++|++++.|++|++||+.+++++..+. |...|++++|+|++.++++|+.||+|++||+++.+..
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~ 138 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD 138 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence 99999999 8899999999999999999999888886 6689999999999999999999999999999987653
Q ss_pred ------EEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecC------------------CCCeEEE
Q 006220 499 ------RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGH------------------RSMILSL 553 (656)
Q Consensus 499 ------~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------------------~~~i~~l 553 (656)
..+.+|.+.|.+++|+|+ +..+++|+.||.| +||++++++++.+..| ...|+++
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence 223578999999999996 5789999999999 9999999999988766 4779999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeeeEe--e---eC-------------CCccEEEEEEc----CCC-CEEEEEECC
Q 006220 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTP--L---MG-------------HTSCVWTLAYS----CEG-SLLASGSAD 610 (656)
Q Consensus 554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~--~---~~-------------h~~~V~~l~~s----~~~-~~l~sgs~D 610 (656)
+|+|+|++|++|+.||.|++||+++++++.. + .. |...|++++|+ |++ .+|++|+.|
T Consensus 218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999999999999999999999987753 2 12 34579999995 443 567888766
Q ss_pred -----CcEEEEeC
Q 006220 611 -----CTVKLWDV 618 (656)
Q Consensus 611 -----g~I~iWd~ 618 (656)
+.+.+|++
T Consensus 298 ~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 298 SRGDNQSLTMIDL 310 (902)
T ss_dssp TTSSCCCEEEEEE
T ss_pred CCCCCceEEEEec
Confidence 37899985
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.7e-31 Score=282.62 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=181.9
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
.+...+....+++++.+||+|+.|++|+|||+....... ......+.+|.+.|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------~~~~~~~~gH~~~v~~v~ 143 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------QHVLGGKSGHHNFVNDID 143 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------EEEECTTTSCSSCEEEEE
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------eeeecccCCCCCceEEEE
Confidence 344445666677889999999999999999987521110 122344679999999999
Q ss_pred Ecc--------CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeE
Q 006220 429 FSP--------LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 429 ~sp--------d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
|+| ++++|+||+.|++|+|||+.++.++....+|..+|.+++|+|++ .+|++|+.||+|++||+.+++...
T Consensus 144 ~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 144 IADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp EEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred EccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence 998 78899999999999999999888888888899999999999987 479999999999999998765332
Q ss_pred E-------------------------ecCCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 500 I-------------------------MAGHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 500 ~-------------------------~~~~~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
. ..+|...|.++.|+ |+++.|++++.|+++++||+.++.....+..|...+..+
T Consensus 224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK 303 (393)
T ss_dssp -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence 1 23677889999987 799999999999999999999888777666665555444
Q ss_pred EEcC--------------------CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 554 AMSP--------------------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 554 ~~sp--------------------~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
.++| ++.++++|+.||.|++||+.+++++....+|..+|++++|+|+|++||+++.+| +
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 3333 344677888999999999999999988889999999999999999999998766 5
Q ss_pred EEEeC
Q 006220 614 KLWDV 618 (656)
Q Consensus 614 ~iWd~ 618 (656)
.+|.+
T Consensus 383 ~lvrL 387 (393)
T 4gq1_A 383 LLTRL 387 (393)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56655
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.7e-30 Score=266.10 Aligned_cols=242 Identities=19% Similarity=0.296 Sum_probs=203.9
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~ 488 (656)
..+.+|.++|++++|+|++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+| ++.+|++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789999999999999999999999999999999876 35667789999999999999 699999999999999
Q ss_pred EEECCCC---------ceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEe-------------
Q 006220 489 IWSMDRI---------QPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFI------------- 544 (656)
Q Consensus 489 lwd~~~~---------~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~------------- 544 (656)
+||++.+ +++..+.+|...|.+++|+|+ +.+|++|+.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 557888899999999999999 9999999999999999999887554332
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEE
Q 006220 545 GHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKL 615 (656)
Q Consensus 545 ~h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~i 615 (656)
+|...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 67889999999997 89999999999998888877765 67778999999999999998 89999999999999
Q ss_pred EeCCCCCceeecccc-------------------------------cCCccccccccccCCCCCeEEEEEcC
Q 006220 616 WDVTTSTKVLKTEEK-------------------------------SGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 616 Wd~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
||+..+......... ........+..+..+..+|.+++|++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 999875432221110 00112245666778888999999974
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=275.38 Aligned_cols=243 Identities=14% Similarity=0.073 Sum_probs=208.5
Q ss_pred eeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCCcccccccCCCCCCCCCCccccCCCCCceeeEEe--ecCcc
Q 006220 348 INTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMA--KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY--QGHSG 422 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~ 422 (656)
.+|.+.|+|++|+|++++| |+|+.||.|+||++. .. .....+ ..|..
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------------------~~~~~~~~~~~~~ 150 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------------------NVLKLRKRFCFSK 150 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------------------SCEEEEEEEECSS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------------------ceeeeeecccCCC
Confidence 4567889999999999996 899999999999987 31 122223 36789
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE----EeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV----CYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
.|++++|+|++++|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|++|++||++++
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998876554 67889999999999999 999999999999999999999
Q ss_pred ceeEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-------------------------CCCC
Q 006220 496 QPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------------HRSM 549 (656)
Q Consensus 496 ~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------------------------h~~~ 549 (656)
+.+.. +.+|...|.+++|+ ++++|++|+.|++|++||+++++++..+.. ....
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 88877 55899999999999 999999999999999999999999888763 2357
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEeC--CCC---eeeEeeeCCCccEEEEEEcCCCCEEEEEEC-------CCcEEEE
Q 006220 550 ILSLAMSPDGRYMASGD-EDGTIMMWDL--ASG---RCVTPLMGHTSCVWTLAYSCEGSLLASGSA-------DCTVKLW 616 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~-~dg~I~iwD~--~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~-------Dg~I~iW 616 (656)
|.+++|+|++++|++++ .|+.|++||+ ..+ ..+..+..| +.|.+++|+|++ ++++++. +..|.+|
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 99999999999999999 8999999999 666 777778888 889999999964 4555433 5568999
Q ss_pred eCCCC
Q 006220 617 DVTTS 621 (656)
Q Consensus 617 d~~~~ 621 (656)
.+...
T Consensus 388 ~~~~~ 392 (450)
T 2vdu_B 388 EYNLN 392 (450)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 87654
No 114
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.7e-29 Score=254.97 Aligned_cols=257 Identities=21% Similarity=0.376 Sum_probs=213.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
+++++||+++ +||+|. |++|+|||+.+.. ......+.+|...|++++|+|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~--------------------------~~~~~~~~~~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD--------------------------ILQLLQMEQPGEYISSVAWIKEG 79 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCC--------------------------EEEEEECCSTTCCEEEEEECTTS
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCC--------------------------EEEEEEecCCCCeEEEEEECCCC
Confidence 5789999986 888874 9999999987521 11223455788999999999999
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCeeEEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~~v~ 512 (656)
++|++|+.||+|++|++.+++.+..+.+|...+.++.+ ++..+++|+.++.+++|+.... ..+..+.+|...+.++.
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 99999999999999999999999999999988876555 5679999999999999998765 45677889999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCee----EEEEecCCCCeEEEEEcCCCCE---EEEEECCCcEEEEeCCCCeeeEee
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGEC----VRIFIGHRSMILSLAMSPDGRY---MASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~---L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
++++++++++++.||+|++||+++++. ......|.+.|.++.++|++.. +++++.++.|++||..........
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 999999999999999999999987653 4556678889999999997653 345678899999999888776654
Q ss_pred eCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.+...+..+.|++++..+++++ .||.|+|||+.+++.+ ..+..|..+|.+|+|++
T Consensus 238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~---------------~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV---------------AELKGHTSRVLSLTMSP 294 (318)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE---------------EEECCCSSCEEEEEECT
T ss_pred -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE---------------EEEcCCCCCEEEEEEcC
Confidence 4667899999999999887765 7999999999886643 34456777788888764
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-30 Score=278.79 Aligned_cols=254 Identities=15% Similarity=0.126 Sum_probs=199.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-------cCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSS-------GLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
-..+|.+++|||||+++|+++.|++|+ +........... ..+.. . .............. ...+|..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg--~--~~~~~~~~~~~~~~-~~~~~~~ 86 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE--F--ENKLDFELAQQNGL-LNSQPVC 86 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC--C--CCTTTTSCCCSSCS-STTSCSC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC--C--cceEEEEeCCCceE-eecCCCC
Confidence 346899999999999999999999999 643322110000 00000 0 00000011111111 1125688
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-----cEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-----PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
.|++++|||+|..|++++.||+|++|+... ++..+. |.. .|.+++|||+|++|++|+.||+|++||+.++..
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 999999999999999999999999999654 666666 665 499999999999999999999999999998752
Q ss_pred -------eEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee---EEEE-ecCCCCeEEEEEcCCCCEE
Q 006220 498 -------LRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIF-IGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 498 -------~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~---~~~~-~~h~~~i~~l~~sp~g~~L 562 (656)
+..+ .+|.+.|.+++|+|+| +++++.|++|++||+.++.. .+.+ .+|...|.+++|+ |+.|
T Consensus 164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L 239 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV 239 (588)
T ss_dssp TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence 5666 6788899999999999 88999999999999988773 3566 4788899999999 6899
Q ss_pred EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEE--cCCCCEEEEEECCCcEEEEeCC
Q 006220 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 563 ~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~--s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
++++ +|.|++||+..++......+|.+.|++++| +|++..+++++.||+ ++|...
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9987 699999999988774444489999999999 999999999999999 999986
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=268.85 Aligned_cols=243 Identities=24% Similarity=0.414 Sum_probs=206.3
Q ss_pred eeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEee-------------CCCccEEEEEEec-CCCE
Q 006220 413 SYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYK-------------GHNYPVWDVQFNP-QGHY 477 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-------------~h~~~V~~l~~sp-~~~~ 477 (656)
....+.+|.++|++++|+| ++++|++|+.||+|++||+.++.....+. +|..+|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3456778999999999999 99999999999999999999877654443 5999999999999 7889
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEE
Q 006220 478 FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA 554 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~ 554 (656)
|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++|+.||.|++||+++++.+..+.+|...|++++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999998888876 6788999999984 45999999999999999999999999999999999999
Q ss_pred EcCCCC-EEEEEECCCcEEEEeCCCCe-eeEee---------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 555 MSPDGR-YMASGDEDGTIMMWDLASGR-CVTPL---------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 555 ~sp~g~-~L~s~~~dg~I~iwD~~~~~-~~~~~---------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|+|++. +|++|+.||.|++||++++. ++..+ .+|...|.+++|+|++++|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999998 58999999999999998765 33433 57889999999999999999999999999999
Q ss_pred CCCCCceeecccccC--------------------------------CccccccccccCCCCCeEEEEEcC
Q 006220 618 VTTSTKVLKTEEKSG--------------------------------TNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 618 ~~~~~~~~~~~~~~~--------------------------------~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
+.++........... ......+..+..+..+|.+++|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 998775433211000 011234556677888999999974
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=7e-29 Score=260.82 Aligned_cols=229 Identities=23% Similarity=0.374 Sum_probs=192.6
Q ss_pred eeeEEeecCccCEEEEEEccC---CCEEEEEeCCCeEEEEeccC-Ccee-EEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220 412 RSYTLYQGHSGPVYSASFSPL---GDFILSSSADTTIRLWSTKL-NANL-VCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd---~~~L~s~s~Dg~I~lwd~~~-~~~~-~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
.....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|..+|.+++|+|++.+|++|+.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 59999999999999999997 4444 678889999999999999999999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeeEEEE--cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----------------
Q 006220 487 ARIWSMDRIQPLRIMAGHLSDVDCVRW--HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR----------------- 547 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~--~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~----------------- 547 (656)
|++||+++++.+. +.+|...|.+++| +|++++|++|+.||.|++||+++++++..+..+.
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA 188 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence 9999999988776 4569999999999 8999999999999999999999988777665443
Q ss_pred ------------------------CCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC---eeeEeeeCCCc------
Q 006220 548 ------------------------SMILSLAMSPDGRY----MASGDEDGTIMMWDLASG---RCVTPLMGHTS------ 590 (656)
Q Consensus 548 ------------------------~~i~~l~~sp~g~~----L~s~~~dg~I~iwD~~~~---~~~~~~~~h~~------ 590 (656)
..+.++.+.+++.. +++++.||.|++||+... ..+..+.+|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 23445555544433 999999999999999887 56777778876
Q ss_pred ------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 591 ------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 591 ------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.|++++|+|++++|++|+.||.|++||+.++.... .+..+..+|.+++|++
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---------------TSEQLDQPISACCFNH 325 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---------------ECCCCSSCEEEEEECT
T ss_pred ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---------------EecCCCCCceEEEECC
Confidence 79999999999999999999999999998765443 3345556666666653
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.9e-29 Score=264.25 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=169.0
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 351 HNGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
...+.+++|||||++||+++ .|++|+|||+.+. .....+ .|.+.|++++
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----------------------------~~~~~~-~~~~~V~~v~ 183 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----------------------------TEKFEI-ETRGEVKDLH 183 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----------------------------EEEEEE-ECSSCCCEEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----------------------------cEEEEe-CCCCceEEEE
Confidence 34589999999999987654 6899999998751 222223 4788999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCC----cEEEEECCCCce----e
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDR----TARIWSMDRIQP----L 498 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg----~i~lwd~~~~~~----~ 498 (656)
|+|+|+++++++.+ .+++|+..++..+.. ..+|...|.+++|+|++.++++++.|+ .+++|++..... .
T Consensus 184 fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~ 262 (365)
T 4h5i_A 184 FSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS 262 (365)
T ss_dssp ECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence 99999999999865 566777666766543 456889999999999999999999887 688899876543 3
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
..+.+|...|++++|+|+|++||+|+.|++|+|||+++++++..+ .+|..+|++++|||||++|++|+.|++|+|||+.
T Consensus 263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 456789999999999999999999999999999999999999876 6899999999999999999999999999999996
Q ss_pred CC
Q 006220 578 SG 579 (656)
Q Consensus 578 ~~ 579 (656)
..
T Consensus 343 ~~ 344 (365)
T 4h5i_A 343 LN 344 (365)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-28 Score=287.23 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=187.9
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIW 490 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lw 490 (656)
..+.+|.++|++++|+|++++|++|+.||+|++||+. ++..+..+.+|..+|++++|+|+ +++|++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 3567999999999999999999999999999999998 55667788999999999999988 9999999999999999
Q ss_pred ECCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcC-------
Q 006220 491 SMDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSP------- 557 (656)
Q Consensus 491 d~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp------- 557 (656)
|+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 77788899999999999999 999999999999999999887 34556778999999999999
Q ss_pred ------CCCEEEEEECCCcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 006220 558 ------DGRYMASGDEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE---GSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 558 ------~g~~L~s~~~dg~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
++.+|++|+.||.|++||++++ .+...+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5899999999999999999877 566778899999999999999 8999999999999999998864
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.6e-28 Score=252.20 Aligned_cols=264 Identities=16% Similarity=0.128 Sum_probs=199.4
Q ss_pred HhccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCCC-CEEEEEeCCCcE-EEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 327 DLRNRVHLSSAALPS--VSFYTFINTHNGLNCASISQDG-SLVAGGFSDSSL-KVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 327 ~~~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~dg-~~La~g~~dg~I-~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
.....+.||...... .+.|++..|..+|..+.|+||. +++.++-.+=.+ .|+.+.-
T Consensus 60 ~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~-------------------- 119 (356)
T 2w18_A 60 ACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC-------------------- 119 (356)
T ss_dssp EESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------------------
T ss_pred eccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE--------------------
Confidence 345677888776542 6788999999999999999974 444444322222 2222221
Q ss_pred cccCCC-CCceeeEEeecCccCEEEEEEccCCCEEEEEe--CCCeEEEEec-cCCceeEEeeCCCccEEEEEEec---CC
Q 006220 403 DIIGPN-GRKRSYTLYQGHSGPVYSASFSPLGDFILSSS--ADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNP---QG 475 (656)
Q Consensus 403 ~~~~~~-~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp---~~ 475 (656)
+++ ........-.+|...|.++ ++++.+.+++ .|+.|++|++ .+++.+..+.+|...+..++|++ ++
T Consensus 120 ---spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~ 193 (356)
T 2w18_A 120 ---SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ 193 (356)
T ss_dssp ---------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST
T ss_pred ---CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC
Confidence 011 0112222234566666655 5666666644 5999999999 45788888889999999999999 78
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEecCCC---CCeeEEEEcCCCCEE------------EEEECCCcEEEEeCCCCeeE
Q 006220 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHL---SDVDCVRWHINCNYI------------ATGSSDKTVRLWDVSSGECV 540 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---~~V~~v~~~p~~~~l------------~tgs~dg~V~iwd~~~~~~~ 540 (656)
.+|++|+.|++|++||+.+++.++.+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++++
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE
Confidence 999999999999999999999999998654 357788999999886 56888999999999999988
Q ss_pred EEE-----ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEE-EEEEcCCCCEEEEEECCCcEE
Q 006220 541 RIF-----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 541 ~~~-----~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
..+ .+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|...+. +++|||+|++|++|+.|++|+
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF 351 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence 776 3676666555554 88999999999999999999999999999987655 589999999999999999999
Q ss_pred EEeC
Q 006220 615 LWDV 618 (656)
Q Consensus 615 iWd~ 618 (656)
|||+
T Consensus 352 lWd~ 355 (356)
T 2w18_A 352 VYHY 355 (356)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9996
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.7e-27 Score=249.32 Aligned_cols=264 Identities=14% Similarity=0.132 Sum_probs=215.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+++|+..... +. ....++..+.+++|+|++++| ++++.|+.|++||+.+
T Consensus 11 d~~v~v~d~~~~~-~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~------------------------- 63 (391)
T 1l0q_A 11 SDNISVIDVTSNK-VT-ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT------------------------- 63 (391)
T ss_dssp TTEEEEEETTTTE-EE-EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-------------------------
T ss_pred CCEEEEEECCCCe-EE-EEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC-------------------------
Confidence 3467778754432 22 334455679999999999987 6677899999999864
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE-EEEECCC
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDR 485 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~sgs~Dg 485 (656)
......+..|. .|.+++|+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++
T Consensus 64 ---~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 64 ---NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp ---TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred ---CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCC
Confidence 12333333343 899999999999875 55567999999999998888777554 68999999999987 6777899
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++
T Consensus 139 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEE
Confidence 9999999999988888766 567999999999988 567788999999999999888776 4567899999999999998
Q ss_pred EE---CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEECCCcEEEEeCCCCCceeec
Q 006220 565 GD---EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 565 ~~---~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.....
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 88 68999999999999998888765 47899999999877 67788999999999988766544
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=258.32 Aligned_cols=263 Identities=8% Similarity=0.013 Sum_probs=202.1
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+....... .++. ...|.++.|+|+ +++|+.|+.|++|+....... ....
T Consensus 57 Dg~v~iwd~~~~~~~-~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~------------------~~~~ 112 (343)
T 3lrv_A 57 DGALHFTQLKDSKTI-TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI------------------LDSK 112 (343)
T ss_dssp TTEEEEEEESSSSCE-EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE------------------EETT
T ss_pred CCcEEEEECCCCcEE-EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE------------------eecC
Confidence 456778865443322 1222 356888899998 999999999999997641100 0000
Q ss_pred CCceeeEEeecCccCEEEEEEcc--CCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSP--LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDR 485 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~sp--d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg 485 (656)
..........+|.++|.+++|+| +++++++|+.||+|++||+.++....... .|...|.+++|+|++.+|++|+.||
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 11112233347889999999999 99999999999999999999998876664 3566899999999999999999999
Q ss_pred cEEEEECCCCcee-EEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeE--EEEEcCC
Q 006220 486 TARIWSMDRIQPL-RIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMIL--SLAMSPD 558 (656)
Q Consensus 486 ~i~lwd~~~~~~~-~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~--~l~~sp~ 558 (656)
.|++||+++++.+ ..+.+ |...|.+++|+|++.+|++|+ ++.|++||+++++.+..+.. |...+. +++|+|+
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 9999999999888 78887 999999999999999999999 55999999999877654443 334444 6999999
Q ss_pred CCEEEEEEC-CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC---CCCEEEEEECCCcEEEEeCCC
Q 006220 559 GRYMASGDE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC---EGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 559 g~~L~s~~~-dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~---~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|++|++++. |+.|++|++..+...... .++..++|++ +...+++++.||.+.++-...
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 999999998 999999999765443332 5678888988 888999999999999886433
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.2e-28 Score=258.91 Aligned_cols=223 Identities=17% Similarity=0.145 Sum_probs=159.0
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-----EeeCCCccEEEEEEec--------CCCEEEEEECCC
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-----CYKGHNYPVWDVQFNP--------QGHYFASSSHDR 485 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-----~~~~h~~~V~~l~~sp--------~~~~l~sgs~Dg 485 (656)
.|.+.+....+++++.+|++|+.|++|+|||..++.... .+.+|...|++++|+| ++++|++||.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 455555556666777889999999999999999876543 3578999999999998 789999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEE---------------------
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIF--------------------- 543 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~--------------------- 543 (656)
+|++||+.+..++..+.+|...|.+++|+|++ ++|++|+.||+|++||+++++.....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999888888888899999999999987 48999999999999999987654322
Q ss_pred ----ecCCCCeEEEEEc-CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-------------------
Q 006220 544 ----IGHRSMILSLAMS-PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC------------------- 599 (656)
Q Consensus 544 ----~~h~~~i~~l~~s-p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~------------------- 599 (656)
.+|...+.++.|+ |+|+.|++++.|+.+++||+..++....+..|...+..+.+.|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 3577788999987 7999999999999999999998887777766665555444333
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 600 -EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 600 -~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
++.++++|+.||+|++||+.++.... .+..+..+|.+|+|++
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~---------------~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNS---------------IPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCE---------------EEEECSSCEEEEEECT
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEE---------------EecCCCCcEEEEEEcC
Confidence 33467788899999999998865432 2233455777777764
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.3e-28 Score=262.45 Aligned_cols=223 Identities=9% Similarity=0.044 Sum_probs=185.0
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc-----C
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----P 423 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~ 423 (656)
.+...|.+++|||||++||+++.||.|+||+... ....+. |.. .
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------------------------------~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------------------------------MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------------------------------EEEECC-CSSCSTTTC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------------------------------eeeecc-CCCcccccc
Confidence 3467899999999999999999999999999542 223334 544 5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------eEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
|.+++|||||++|++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++.|++|++||+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~ 209 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV 209 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence 99999999999999999999999999998753 4665 5677899999999999 889999999999999
Q ss_pred CCCce---eEEe-cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE--cCCCCEEEEEE
Q 006220 493 DRIQP---LRIM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM--SPDGRYMASGD 566 (656)
Q Consensus 493 ~~~~~---~~~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~--sp~g~~L~s~~ 566 (656)
..... .+.+ .+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|..++| +|++..|++++
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 88773 3556 4788999999999 68999887 699999999988885555589999999999 99999999999
Q ss_pred CCCcEEEEeCCC-----------------------CeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 567 EDGTIMMWDLAS-----------------------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 567 ~dg~I~iwD~~~-----------------------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
.||+ ++|.... +..+..+. +...|++++|||||+.+|+++.
T Consensus 287 edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 287 KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 9999 9998742 11122222 2446999999999999998873
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.7e-27 Score=253.46 Aligned_cols=258 Identities=12% Similarity=0.045 Sum_probs=214.9
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
..........+.+++|+|++.++++++.++.|++||+.+...... .....+.+|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------------~~~~~~~~~~~~ 171 (433)
T 3bws_A 115 FISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-----------------------SPPEKYKKKLGF 171 (433)
T ss_dssp EEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-----------------------CCCHHHHTTCCE
T ss_pred EEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-----------------------cCcccccccCCc
Confidence 333445556678999999888888888899999999875321110 001134578999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEec
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~ 502 (656)
|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++ .|+.|++||+++++.+..+.
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 99999999999999999999999999999999999989999999999999999886555 79999999999998888877
Q ss_pred CCCCCeeEEEEcCCCCEEEEEE--------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE-EEEECCCcEEE
Q 006220 503 GHLSDVDCVRWHINCNYIATGS--------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMM 573 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs--------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L-~s~~~dg~I~i 573 (656)
.+ ..+.+++|+|+++++++++ .||.|++||+.+++.+..+ .|...+.+++|+|+|+.+ ++++.|+.|++
T Consensus 252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 55 5699999999999999988 4889999999999887765 455688999999999755 66689999999
Q ss_pred EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCCceeec
Q 006220 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---------------DCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~---------------Dg~I~iWd~~~~~~~~~~ 627 (656)
||+.+++.+..+. +...+.+++|+|+++++++++. ||.|++||+.+++.....
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 9999998887775 6678999999999999988886 579999999887765443
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.7e-26 Score=249.61 Aligned_cols=259 Identities=12% Similarity=0.116 Sum_probs=216.2
Q ss_pred cceecCCCCCCceeEE----EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 330 NRVHLSSAALPSVSFY----TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~----~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..+++|+......... .+.+|.+.|++++|++++.++++++.|+.|++||+..
T Consensus 144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~----------------------- 200 (433)
T 3bws_A 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT----------------------- 200 (433)
T ss_dssp SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-----------------------
T ss_pred CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-----------------------
Confidence 4577887654433321 2336777899999999999999999999999999864
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-- 482 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-- 482 (656)
......+..|...+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|++.++++++
T Consensus 201 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 201 -----LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp -----CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEE
T ss_pred -----ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECC
Confidence 223445567889999999999999875 55589999999999988887777644 589999999999999988
Q ss_pred ------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220 483 ------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (656)
Q Consensus 483 ------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (656)
.||.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 4889999999988877665 455689999999999765 566889999999999999888776 6778999999
Q ss_pred cCCCCEEEEEEC---------------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 006220 556 SPDGRYMASGDE---------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA-DCTVKLWDVT 619 (656)
Q Consensus 556 sp~g~~L~s~~~---------------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~ 619 (656)
+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 999999988876 579999999999998888764 57899999999999998875 9999999986
Q ss_pred C
Q 006220 620 T 620 (656)
Q Consensus 620 ~ 620 (656)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.6e-26 Score=242.75 Aligned_cols=234 Identities=17% Similarity=0.172 Sum_probs=187.1
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 352 NGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
.++.++++++++++++ +|+.|+.|+|||+.+. .....+. |..+|.+++|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~----------------------------~~~~~~~-~~~~v~~v~~~ 109 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK----------------------------QDVSRIK-VDAPVKDLFLS 109 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT----------------------------EEEEEEE-CSSCEEEEEEC
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC----------------------------cEEEEEE-CCCceEEEEEc
Confidence 3688999999988884 5777899999998751 2223333 66799999999
Q ss_pred cCCCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEecCCCEEEE--EECCCcEEEEECCCCc-----------
Q 006220 431 PLGDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFAS--SSHDRTARIWSMDRIQ----------- 496 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s--gs~Dg~i~lwd~~~~~----------- 496 (656)
++. ++++ .|+.|++||+.++ +.+..+.. +...+++++ .++++ |+.||.|++||+.++.
T Consensus 110 ~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 110 REF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp SSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred CCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 753 4444 4789999999987 66655554 455567777 56666 5799999999998765
Q ss_pred ----e-eEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEe-c-CCCCeEEEEEcCCCCEEEEEECC
Q 006220 497 ----P-LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFI-G-HRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 497 ----~-~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~-~-h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+ +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+. + |...|.+++|+|+|++|++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 2 7888999999999999999999999999998 9999999999999998 5 99999999999999999999999
Q ss_pred CcEEEEeCCCCeee--Eee--------------------e-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 569 GTIMMWDLASGRCV--TPL--------------------M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 569 g~I~iwD~~~~~~~--~~~--------------------~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|.|++||+..+... ..+ . .+......++|+++++.|++++.||.+++|++..+.
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999765311 111 0 112234678999999999999999999999987644
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=6.8e-25 Score=233.78 Aligned_cols=231 Identities=13% Similarity=0.112 Sum_probs=194.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE-EEEeCC
Q 006220 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSAD 442 (656)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~D 442 (656)
.++++++.|+.|++||+.. ......+.+|. .+.+++|+|+++++ ++++.|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----------------------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d 53 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----------------------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHS 53 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----------------------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEEcCCCCEEEEEECCC----------------------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCC
Confidence 4678888999999999875 23334455554 58999999999976 677799
Q ss_pred CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE-
Q 006220 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI- 520 (656)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l- 520 (656)
++|++||+.+++.+..+..+. .+.+++|+|++.++++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++++
T Consensus 54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999999888887665 899999999999886555 6799999999999888887755 578999999999988
Q ss_pred EEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220 521 ATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM-ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (656)
Q Consensus 521 ~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L-~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~ 599 (656)
++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~ 209 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP 209 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC
Confidence 67778999999999999999888766 457999999999987 567788999999999998887775 456789999999
Q ss_pred CCCEEEEEE---CCCcEEEEeCCCCCceeec
Q 006220 600 EGSLLASGS---ADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 600 ~~~~l~sgs---~Dg~I~iWd~~~~~~~~~~ 627 (656)
++++|++++ .++.|++||+.+++.....
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 999999888 6899999999987655443
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.8e-26 Score=235.56 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=163.1
Q ss_pred EEEEeeCC-CCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220 344 FYTFINTH-NGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (656)
Q Consensus 344 ~~~~~~~~-~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (656)
+..+.+-+ +.|++++|||| ++++++++.+ ++||++.+....... ..+. .....+......++....+.
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss--~~g~---d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS--GTLS---DQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE--SSST---TCEEEEEEECTTSCEEEEEE
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec--ccCC---CCcEEEEEECCCCceeeeec
Confidence 33444433 46999999999 9999988743 677777542221110 0000 00011111111234556677
Q ss_pred cCccCEEEEEEcc---CCCEEEEEeCCCeEEEEeccCCceeEEeeCCC---ccEEEEEEecCCCEE------------EE
Q 006220 419 GHSGPVYSASFSP---LGDFILSSSADTTIRLWSTKLNANLVCYKGHN---YPVWDVQFNPQGHYF------------AS 480 (656)
Q Consensus 419 ~h~~~V~~l~~sp---d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~---~~V~~l~~sp~~~~l------------~s 480 (656)
+|+..++.++|++ ++..|++|+.|++|+|||+.+++++..+.+|. ..+.+++|+|+|.++ ++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 8999999999999 77999999999999999999999999998754 357778999999886 56
Q ss_pred EECCCcEEEEECCCCceeEEe-----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE-EEE
Q 006220 481 SSHDRTARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLA 554 (656)
Q Consensus 481 gs~Dg~i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~-~l~ 554 (656)
|+.|++|++||..+++.+..+ .+|...+.+..+ ++..+++|+.|++|+|||+.+++++.++.+|...+. +++
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 788999999999999887765 366665544444 478999999999999999999999999999987655 689
Q ss_pred EcCCCCEEEEEECCCcEEEEeC
Q 006220 555 MSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 555 ~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
|||||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999995
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2e-25 Score=241.21 Aligned_cols=276 Identities=17% Similarity=0.110 Sum_probs=216.2
Q ss_pred ceecCCC--CCCcee-EEEEeeCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCCccc
Q 006220 331 RVHLSSA--ALPSVS-FYTFINTHNGLNCASISQ--------------DGSLVAGGFSD------SSLKVWDMAKLGQQA 387 (656)
Q Consensus 331 ~v~l~~~--~~ps~~-~~~~~~~~~~V~~l~fs~--------------dg~~La~g~~d------g~I~Iwdl~~~~~~~ 387 (656)
.+++|+. ...... -.++..|...+.++++++ .+..++.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----- 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----- 168 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence 6788887 544322 245777777788887775 25666666554 7999999863
Q ss_pred ccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCC---eEEEEeccCCceeEEeeCCCc
Q 006220 388 VSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNY 464 (656)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~ 464 (656)
.....+.+|.+.|.+++|+|+|+.|++++.++ .|++||+.+++.. .+..|..
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~ 223 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR 223 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC
Confidence 12345667899999999999999999999875 9999999988765 4667888
Q ss_pred cEEEEEEecCCCEEE-EEECCCc--EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCe
Q 006220 465 PVWDVQFNPQGHYFA-SSSHDRT--ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGE 538 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~-sgs~Dg~--i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~ 538 (656)
.+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|++||+.+++
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 999999999999888 6666654 99999988765 566778889999999999999998886 44 68888998877
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---c
Q 006220 539 CVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---T 612 (656)
Q Consensus 539 ~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~ 612 (656)
.. .+..+...+.+++|+|+|++|++++.+ +.|.+||+.+++.. .+..|. .+.+++|+|+|++|++++.++ .
T Consensus 303 ~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 303 PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence 53 455677789999999999999988764 58999999988764 455554 899999999999999998877 7
Q ss_pred EEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 613 I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
|++||+.... +..++.+...|.+++|++
T Consensus 380 l~~~d~~g~~----------------~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 380 LNLVSTDGRF----------------KARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEEEETTSCC----------------EEECCCSSSEEEEEEECC
T ss_pred EEEEECCCCc----------------EEEeeCCCCCCcCCcccc
Confidence 9999986432 223455666777777764
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=8.2e-23 Score=220.70 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=192.0
Q ss_pred cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS---SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg---~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
..+++|+.... +...+.+|...|.+++|||||++||+++.++ .|++||+.+.
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg----------------------- 213 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG----------------------- 213 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----------------------
T ss_pred ceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-----------------------
Confidence 46677765432 3445677888999999999999999998875 8999998741
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
....+..|.+.+.+++|+|+|+.|+ +++.++. |++||+.++.. ..+..|...+.+++|+|+|++|++++.
T Consensus 214 ------~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 214 ------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ------cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC
Confidence 1234567888999999999999887 6666654 99999988765 567778889999999999999998886
Q ss_pred -CC--cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220 484 -DR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 484 -Dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (656)
++ .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..+. .+.+++|+|
T Consensus 287 ~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP 363 (415)
T ss_dssp TTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT
T ss_pred CCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC
Confidence 44 677889887764 4455677789999999999999988764 58999999988874 455554 899999999
Q ss_pred CCCEEEEEECCC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220 558 DGRYMASGDEDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG 601 (656)
Q Consensus 558 ~g~~L~s~~~dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~ 601 (656)
+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|..
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 999999988777 79999986 66778888999999999999964
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.7e-22 Score=210.20 Aligned_cols=265 Identities=11% Similarity=0.140 Sum_probs=190.3
Q ss_pred ccceecCCCC-CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 329 RNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 329 ~~~v~l~~~~-~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
...+++|+.. ...........+...+.+++|+|+|++|++++.+ +.|.+|++....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---------------------- 71 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---------------------- 71 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----------------------
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----------------------
Confidence 3567777543 2233344456677889999999999999888876 999999987210
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEecc---CCceeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTK---LNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs 482 (656)
+.......+..+. .+.+++|+|++++|++++. ++.|.+||+. +......+..+ ..+.+++|+|+++++++++
T Consensus 72 --~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 72 --GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp --CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEE
T ss_pred --CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEec
Confidence 1112223333333 7889999999998876654 8899999994 33344444433 4588999999999888887
Q ss_pred -CCCcEEEEECCC-CceeE----Eec-CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC--Cee--EEEEe----cC
Q 006220 483 -HDRTARIWSMDR-IQPLR----IMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS--GEC--VRIFI----GH 546 (656)
Q Consensus 483 -~Dg~i~lwd~~~-~~~~~----~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~--~~~--~~~~~----~h 546 (656)
.++.|++||+.+ ++... .+. .....+.+++|+|+++++++++ .++.|.+||+.. +.. ...+. ++
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 899999999987 54332 222 2345788999999999876655 789999999953 433 22222 11
Q ss_pred --CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC----CCeeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220 547 --RSMILSLAMSPDGRYMASGD-EDGTIMMWDLA----SGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV 618 (656)
Q Consensus 547 --~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~----~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~ 618 (656)
...+.+++|+|+|++|+++. .++.|.+||+. ..+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 23567899999999887554 78999999998 2345555555544 88999999999888887 6899999966
Q ss_pred CC
Q 006220 619 TT 620 (656)
Q Consensus 619 ~~ 620 (656)
..
T Consensus 307 d~ 308 (343)
T 1ri6_A 307 VG 308 (343)
T ss_dssp ET
T ss_pred cC
Confidence 53
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=4.1e-22 Score=222.53 Aligned_cols=263 Identities=11% Similarity=0.095 Sum_probs=206.1
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCCcccccccCCCCCCCCCCccccC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDM--AKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
...+.+|+...... ..++..+. .+.+++|||||++|++++.|+.|++||+ .+
T Consensus 158 d~~V~v~D~~t~~~-~~~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------------------------ 211 (543)
T 1nir_A 158 AGQIALVDGDSKKI-VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE------------------------ 211 (543)
T ss_dssp GTEEEEEETTTCCE-EEEEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS------------------------
T ss_pred CCeEEEEECCCceE-EEEEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC------------------------
Confidence 45677776654433 23333233 3999999999999999999999999998 32
Q ss_pred CCCCceeeEEeecCccCEEEEEEcc----CCCEEEEEeC-CCeEEEEeccCCceeEEeeCC-----------CccEEEEE
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSP----LGDFILSSSA-DTTIRLWSTKLNANLVCYKGH-----------NYPVWDVQ 470 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~sp----d~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h-----------~~~V~~l~ 470 (656)
......+. +...+.+++|+| +|+++++++. +++|.+||..+++++..+..+ ...+..+.
T Consensus 212 ----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 212 ----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp ----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred ----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 12233333 345679999999 9999998884 899999999999988877652 22688999
Q ss_pred EecCCCE-EEEEECCCcEEEEECCCCceeE--EecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEec-
Q 006220 471 FNPQGHY-FASSSHDRTARIWSMDRIQPLR--IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG- 545 (656)
Q Consensus 471 ~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~--~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~- 545 (656)
++|++.. +++...+++|.+||+.+.+.+. .+ .+...+..+.|+|+|+++++++ .+++|.+||..+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9997665 5566688999999998766544 33 3556788999999999887665 588999999999999988874
Q ss_pred ---CCCCeEEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-------CeeeEeeeCCCccEEEEEEcCCCCEEEEEE-----
Q 006220 546 ---HRSMILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGS----- 608 (656)
Q Consensus 546 ---h~~~i~~l~~sp~-g~~L~s~~-~dg~I~iwD~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs----- 608 (656)
|.+....+ ++|+ |..++++. .|++|.+||+.+ ++++.++.+|.+.+..++++|+|++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 55444443 5777 56666665 689999999998 899999999998889999999999999987
Q ss_pred --CCCcEEEEeCCCCCce
Q 006220 609 --ADCTVKLWDVTTSTKV 624 (656)
Q Consensus 609 --~Dg~I~iWd~~~~~~~ 624 (656)
.+++|.|||+.+.+..
T Consensus 445 ~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp HHHHTCEEEEETTCTTSC
T ss_pred cccCceEEEEECCCCCCC
Confidence 2779999999998765
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=5.6e-23 Score=208.36 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=192.0
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-LGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+++|+....... .+..+...|.+++|+|||++|++++ ++.|.+||+.. ...
T Consensus 21 ~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------- 75 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------- 75 (297)
T ss_dssp CEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----------------------
T ss_pred ceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----------------------
Confidence 456777776544433 4566788999999999999999986 88999999874 221
Q ss_pred CCCceeeEEeecC-ccCEEEEEEccCCCEEEEEe--CCCeEEEEec--cCCceeEEeeCCCccEEEEEEecCCCEEE-EE
Q 006220 408 NGRKRSYTLYQGH-SGPVYSASFSPLGDFILSSS--ADTTIRLWST--KLNANLVCYKGHNYPVWDVQFNPQGHYFA-SS 481 (656)
Q Consensus 408 ~~~~~~~~~l~~h-~~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~--~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sg 481 (656)
.....+| ...|.+++|+|++++|++++ .++.+.||.+ .++. ...+..+. .+.+++|+|++++++ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEE
Confidence 1112233 46788999999999999998 3345555554 4443 34444333 588999999999887 77
Q ss_pred ECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCC
Q 006220 482 SHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 482 s~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
+.++.+++|+++. ......+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d 227 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS 227 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence 8899999998642 234556667888999999999999888776 58999999986 56677778888888999999999
Q ss_pred CCEEEEEECC-----------CcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC
Q 006220 559 GRYMASGDED-----------GTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 559 g~~L~s~~~d-----------g~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
|++|++++.+ +.|.+||+.+++. +..+.+|...+.+++|+|+++.|++++.+.
T Consensus 228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999988765 5699999988765 444557888899999999999998887654
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.6e-22 Score=234.42 Aligned_cols=261 Identities=14% Similarity=0.124 Sum_probs=192.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC-ceeeEEeecCccC
Q 006220 351 HNGLNCASISQDGSLVAGGFS-DS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR-KRSYTLYQGHSGP 423 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~-dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~ 423 (656)
...+.+++|||||++|++++. |+ .|++||+.+............. .....+..... ....... .....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSDEEKARRERQRI-AAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccchhhhhhhhhhh-ccccC
Confidence 446899999999999999988 88 8999998764332211110000 00000000000 0000000 01134
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
|.+++|||||++|++++. ++|++||+.++. ....+..|...+.+++|||+|++|++++ ++.|++||+.+++.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 788999999999999887 899999999873 4455667888899999999999999987 469999999988776655
Q ss_pred cCCCCC----------------eeEEEEcCCCCEEEEEECCC---------------------------------cEEEE
Q 006220 502 AGHLSD----------------VDCVRWHINCNYIATGSSDK---------------------------------TVRLW 532 (656)
Q Consensus 502 ~~~~~~----------------V~~v~~~p~~~~l~tgs~dg---------------------------------~V~iw 532 (656)
..+... +.+++|+|+|++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 544332 47899999999999988765 89999
Q ss_pred eCCC-CeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCeeeEeeeCCCc----cEEEEEEcCC
Q 006220 533 DVSS-GECVRIFI--GHRSMILSLAMSPDGRYMASGDE-----DGTIMMWDLASGRCVTPLMGHTS----CVWTLAYSCE 600 (656)
Q Consensus 533 d~~~-~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~-----dg~I~iwD~~~~~~~~~~~~h~~----~V~~l~~s~~ 600 (656)
|+.+ ++...... .|...+.+++| |||++|++++. ++.|.+||+.++++...+..+.. .+.+++|+||
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9998 87765543 36778999999 99999997764 56899999999988776665543 4568999999
Q ss_pred CCEEEEEECCCcEEEEeCC
Q 006220 601 GSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 601 ~~~l~sgs~Dg~I~iWd~~ 619 (656)
|+++++++.||.++||.+.
T Consensus 348 g~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SCEEEEECTTSSCEEEEEC
T ss_pred CeEEEEecCCCccEEEEEc
Confidence 9999999999988888776
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.9e-21 Score=200.30 Aligned_cols=248 Identities=8% Similarity=0.013 Sum_probs=198.3
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 349 NTHNGLNCASISQDGSLVAGGFS-------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~-------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
.....+..++|+|+++++++++. ++.|.+||..+.. ....+. ..
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------------------------~~~~~~-~~ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----------------------------VTQAIH-ND 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----------------------------EEEEEE-ES
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----------------------------EEEEEe-cC
Confidence 34467899999999999888874 5679999986521 111221 22
Q ss_pred cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCcc---------EEEEEEecCCCEEEEEE--CCCcEEE
Q 006220 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYP---------VWDVQFNPQGHYFASSS--HDRTARI 489 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~l~sgs--~Dg~i~l 489 (656)
..+.+++|+|++++++ ++..++.|.+||..+++.+..+..+... +.+++|+|+|+++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 3467899999999654 5556799999999999888777664322 78899999999887776 4789999
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec----CCCCeEEEEEcCCCCEEEEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----h~~~i~~l~~sp~g~~L~s~ 565 (656)
||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||..+++.+..+.. +...+..++|+|+|++++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888876666789999999999999999999999999999998887764 55568889999999987776
Q ss_pred EC-CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCceeec
Q 006220 566 DE-DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 566 ~~-dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~ 627 (656)
+. ++.|.+||+.+++.+..+..+.. .+++|+|+++.++.++ .++.|.+||+.+++.....
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 65 49999999999998887765432 5799999999665555 6899999999887765443
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.4e-22 Score=201.04 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=177.5
Q ss_pred EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEE
Q 006220 369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLW 448 (656)
Q Consensus 369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lw 448 (656)
++.++.|++||+... ....+..|.+.|.+++|+|++++|++++ ++.|++|
T Consensus 18 ~~~~~~i~~~d~~~~-----------------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~ 67 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR-----------------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRL 67 (297)
T ss_dssp CCCCEEEEEEETTTT-----------------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CCcceeEEEEeCCCC-----------------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEE
Confidence 457889999998641 2234556889999999999999999987 7899999
Q ss_pred eccC-CceeEEeeCC-CccEEEEEEecCCCEEEEEE--CCCcEEEEE--CCCCceeEEecCCCCCeeEEEEcCCCCEEE-
Q 006220 449 STKL-NANLVCYKGH-NYPVWDVQFNPQGHYFASSS--HDRTARIWS--MDRIQPLRIMAGHLSDVDCVRWHINCNYIA- 521 (656)
Q Consensus 449 d~~~-~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd--~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~- 521 (656)
|+.+ +........+ ...+.+++|+|++.++++++ .++...+|. ..++. ...+..+ ..+.+++|+|++++|+
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 68 SLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp ESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred eCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence 9998 7776666565 46789999999999999999 334555554 45444 4444444 3589999999999887
Q ss_pred EEECCCcEEEEeCC-CCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEc
Q 006220 522 TGSSDKTVRLWDVS-SGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYS 598 (656)
Q Consensus 522 tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s 598 (656)
+++.++.+++|++. .+.....+..+...+.+++|+|+|++|+.++ .++.+.+|++. .+..+..+..|...+.+++|+
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS 225 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC
T ss_pred EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC
Confidence 77889999999863 2334456667888999999999999888766 58999999986 566777788888899999999
Q ss_pred CCCCEEEEEECC-----------CcEEEEeCCCCCce
Q 006220 599 CEGSLLASGSAD-----------CTVKLWDVTTSTKV 624 (656)
Q Consensus 599 ~~~~~l~sgs~D-----------g~I~iWd~~~~~~~ 624 (656)
|+|++|++++.+ +.|++||+.+++..
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 999999988876 56999999887653
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.4e-21 Score=201.27 Aligned_cols=264 Identities=11% Similarity=0.062 Sum_probs=191.4
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+.+|+........ .+..+...+ +++|+|||+++++++. ++.|.+||+.....
T Consensus 19 ~~~v~~~d~~~~~~~~-~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---------------------- 74 (331)
T 3u4y_A 19 LRRISFFSTDTLEILN-QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP---------------------- 74 (331)
T ss_dssp GTEEEEEETTTCCEEE-EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------
T ss_pred CCeEEEEeCcccceee-eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------
Confidence 3467777655443322 233334456 9999999997766655 88999999875211
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCC---eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-EC
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADT---TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SH 483 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg---~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~ 483 (656)
....+..+..++.+++|+|++++++++..++ .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..
T Consensus 75 -----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 75 -----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp -----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEET
T ss_pred -----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecC
Confidence 1334455666666699999999998655553 89999999998887776544 46899999999865554 56
Q ss_pred CCc-EEEEECCCCcee----EEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee---EEEEecCCCCeEEEE
Q 006220 484 DRT-ARIWSMDRIQPL----RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC---VRIFIGHRSMILSLA 554 (656)
Q Consensus 484 Dg~-i~lwd~~~~~~~----~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~ 554 (656)
++. +.+|+++....+ .........+.+++|+|+|+++++++ .++.|++||+.+++. +..+..+ ..+..++
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 227 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV 227 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence 688 999998764433 11123445689999999999776655 688999999999988 7777644 5678899
Q ss_pred EcCCCCEEEEEE-CCCcEEEEeCCCCee--eEeeeCC----Ccc---EEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCCc
Q 006220 555 MSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLMGH----TSC---VWTLAYSCEGSLLASGSA-DCTVKLWDVTTSTK 623 (656)
Q Consensus 555 ~sp~g~~L~s~~-~dg~I~iwD~~~~~~--~~~~~~h----~~~---V~~l~~s~~~~~l~sgs~-Dg~I~iWd~~~~~~ 623 (656)
|+|+|++|++++ .++.|.+||+.+++. +..+..+ ... ...++|+|+|++|++++. ++.|.+||+.....
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 999999776654 578899999999877 4443322 222 245899999998866655 56999999987543
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2e-21 Score=211.03 Aligned_cols=254 Identities=17% Similarity=0.147 Sum_probs=182.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..++++++++++.++++|+.+| |+||+......... .... ..... .........|.+.|++++|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~~----~~~~~-----~~~~~~~~~~~~~v~~l~~sp 102 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGDD----PNKIV-----DKVQGLLVPMKFPIHHLALSC 102 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTCC----TTCEE-----ECCCCEEECCSSCEEEEEECT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cccC----ccccc-----ccCccccccCCCcccEEEEcC
Confidence 3578999999999999999888 99998753110000 0000 00000 001112235678899999999
Q ss_pred CCCEEE----EEeCCCeEEEEeccCC--------ce---eEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220 432 LGDFIL----SSSADTTIRLWSTKLN--------AN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 432 d~~~L~----s~s~Dg~I~lwd~~~~--------~~---~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
++++|+ +|+.|++|++||+.++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 7889999999998764 22 3455679999999999997 899999999999999999998
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------CCeEEEEEcCCCCEEEEE-EC
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-------SMILSLAMSPDGRYMASG-DE 567 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------~~i~~l~~sp~g~~L~s~-~~ 567 (656)
..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..|. ..|.+++|++++.++++. +.
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 7776777888999999999999999999999999999998 66666665442 379999999998887653 34
Q ss_pred CC------cEEEEeCCCCe-----eeEeee-------CCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220 568 DG------TIMMWDLASGR-----CVTPLM-------GHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (656)
Q Consensus 568 dg------~I~iwD~~~~~-----~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~ 620 (656)
|| .+++|+++... ....+. +...+-..+.+-++.+++++++ ..+.|.|+....
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 43 38999997642 111111 1122223344446667666655 455577776543
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=1.2e-21 Score=227.07 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=188.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.|.+++|||||++|++++. +.|.+||+.+... .....+..|...+.+++||||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~--------------------------~~~~~l~~~~~~~~~~~~SPD 162 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK--------------------------AAVRQLTHGEGFATDAKLSPK 162 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST--------------------------TSCCBCCCSSSCEEEEEECTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc--------------------------ceEEEcccCCcccccccCCCC
Confidence 4889999999999999976 9999999875200 012234567788999999999
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc----------------EEEEEEecCCCEEEEEECCC-----------
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP----------------VWDVQFNPQGHYFASSSHDR----------- 485 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~----------------V~~l~~sp~~~~l~sgs~Dg----------- 485 (656)
|++|++++. +.|++||+.++........+... +.+++|||+|++|++++.|+
T Consensus 163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 999998874 68999999987665544444332 47899999999999998766
Q ss_pred ----------------------cEEEEECCC-CceeEEec--CCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC
Q 006220 486 ----------------------TARIWSMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS 535 (656)
Q Consensus 486 ----------------------~i~lwd~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~ 535 (656)
.|++||+.+ ++...... .|...+..++| |+|++|++++. +..|++||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 789999988 77665543 37778999999 99999998764 5689999999
Q ss_pred CCeeEEEEecCCC----CeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEEE-EEcCCCCEEEEEE-
Q 006220 536 SGECVRIFIGHRS----MILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTL-AYSCEGSLLASGS- 608 (656)
Q Consensus 536 ~~~~~~~~~~h~~----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l-~~s~~~~~l~sgs- 608 (656)
++++...+..+.. .+.+++|+|||+++++++.||.+.||.+. .+. ...+..|...|.++ .|+|+++.|+..+
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 9998887776653 45689999999999999999988888765 445 77777888888887 5999998776544
Q ss_pred CCC--cEEEEeCCC
Q 006220 609 ADC--TVKLWDVTT 620 (656)
Q Consensus 609 ~Dg--~I~iWd~~~ 620 (656)
.++ .++||++..
T Consensus 400 ~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 400 IESARESQIYAVPL 413 (741)
T ss_dssp SSCTTCBEEEEEET
T ss_pred CCCCceEEEEEEEc
Confidence 455 899999864
No 141
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=6.8e-21 Score=212.61 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=206.7
Q ss_pred cceecCCC--CCCceeEEEEeeCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 330 NRVHLSSA--ALPSVSFYTFINTHNGLNCASISQ----DGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 330 ~~v~l~~~--~~ps~~~~~~~~~~~~V~~l~fs~----dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
..+.+|+. ... .+..+ +.+...+.+++||| ||++|++++. ++.|.|||..+..........
T Consensus 200 ~~V~v~D~~~~t~-~~~~~-i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~---------- 267 (543)
T 1nir_A 200 ARIDMIDLWAKEP-TKVAE-IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR---------- 267 (543)
T ss_dssp SEEEEEETTSSSC-EEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC----------
T ss_pred CeEEEEECcCCCC-cEEEE-EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc----------
Confidence 56777766 322 22333 34566789999999 9999999874 899999998753322111000
Q ss_pred cccCCCCCceeeEEeecCc-cCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEE
Q 006220 403 DIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYF 478 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l 478 (656)
.........|. ..+.++.++|++. ++++...+++|.+||..+...+. .+. +...+.++.|+|+|++|
T Consensus 268 --------g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 268 --------GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp --------EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred --------CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 00000000133 3789999999876 56677889999999998776544 333 56678899999999987
Q ss_pred EEEE-CCCcEEEEECCCCceeEEecC----CCCCeeEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-------CeeEEEEe
Q 006220 479 ASSS-HDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHIN-CNYIATGS-SDKTVRLWDVSS-------GECVRIFI 544 (656)
Q Consensus 479 ~sgs-~Dg~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~-~~~l~tgs-~dg~V~iwd~~~-------~~~~~~~~ 544 (656)
++++ .+++|.+||+.+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ +++++.+.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 7665 589999999999998887764 54433333 4777 55566665 589999999998 89999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCeee-Eee--------eCCCccEEEEEEcCCCCEEEEEE
Q 006220 545 GHRSMILSLAMSPDGRYMASGD-------EDGTIMMWDLASGRCV-TPL--------MGHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~-------~dg~I~iwD~~~~~~~-~~~--------~~h~~~V~~l~~s~~~~~l~sgs 608 (656)
+|.+.+..++++|+|++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|+|+.++++.
T Consensus 418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 9998889999999999999987 3779999999998877 443 35678899999999999988763
Q ss_pred -----CCCcEEEEeCCCCCceeecc
Q 006220 609 -----ADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 609 -----~Dg~I~iWd~~~~~~~~~~~ 628 (656)
.|+.|.|||..+++......
T Consensus 498 ~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ecCCCCCCeEEEEECCCceEEEeec
Confidence 37999999999988765544
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.2e-20 Score=197.79 Aligned_cols=254 Identities=7% Similarity=0.085 Sum_probs=180.7
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
..........+...+..++|+|||++++++.. ++.|.+|++.... ......+
T Consensus 28 g~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~--------------------------~~~~~~~ 81 (347)
T 3hfq_A 28 KTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT--------------------------AHKLNTV 81 (347)
T ss_dssp TEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE--------------------------EEEEEEE
T ss_pred CeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc--------------------------EEEeeee
Confidence 33334445566677889999999994444432 6899999985311 1233334
Q ss_pred ecCccCEEEEEEccCCCEEEEEe-CCCeEEEEeccCCce---eEEeeC---------CCccEEEEEEecCCCEEEEEECC
Q 006220 418 QGHSGPVYSASFSPLGDFILSSS-ADTTIRLWSTKLNAN---LVCYKG---------HNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~---~~~~~~---------h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
..+...+..++|+|++++|++++ .+++|.+|++..... +..+.. +...+.+++|+|+|+.++++..+
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 45677888999999999888887 789999999963222 222221 12248899999999966666678
Q ss_pred CcEEEEECC-CCceeE--EecC-CCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--Cee--EEEEecCC------CC
Q 006220 485 RTARIWSMD-RIQPLR--IMAG-HLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR------SM 549 (656)
Q Consensus 485 g~i~lwd~~-~~~~~~--~~~~-~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~--~~~--~~~~~~h~------~~ 549 (656)
+.|++|++. +++... .+.. ....+..++|+|+|++++++ ..++.|++|++.. ++. +..+.... ..
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 899999998 443322 2222 23367889999999977664 5678999999874 543 22333322 34
Q ss_pred eEEEEEcCCCCEEE-EEECCCcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCC
Q 006220 550 ILSLAMSPDGRYMA-SGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVT 619 (656)
Q Consensus 550 i~~l~~sp~g~~L~-s~~~dg~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~ 619 (656)
+..++|+|+|++|+ ++..++.|.+||+.. .+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 88899999999874 556689999999972 35566666666678999999999988888765 899999654
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.3e-21 Score=196.84 Aligned_cols=262 Identities=12% Similarity=0.090 Sum_probs=195.8
Q ss_pred cceecCCCCCCceeEEEEeeCCC---CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~---~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..+.+|+....... ....... .+.+++|+|||++++ ++..++.|.+||+.+...
T Consensus 11 ~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------------- 68 (337)
T 1pby_B 11 DKLVVIDTEKMAVD--KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-------------------- 68 (337)
T ss_dssp TEEEEEETTTTEEE--EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------------------
T ss_pred CeEEEEECCCCcEE--EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--------------------
Confidence 35666655433222 2222333 588999999998765 555678999999875221
Q ss_pred CCCCCceeeEEee-c----CccCEEEEEEccCCCEEEEEe------------CCCeEEEEeccCCceeEEeeCCCccEEE
Q 006220 406 GPNGRKRSYTLYQ-G----HSGPVYSASFSPLGDFILSSS------------ADTTIRLWSTKLNANLVCYKGHNYPVWD 468 (656)
Q Consensus 406 ~~~~~~~~~~~l~-~----h~~~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~ 468 (656)
...+. + |...+.+++|+|+++++++++ .++.|.+||+.+++.+..+.. ...+.+
T Consensus 69 --------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~ 139 (337)
T 1pby_B 69 --------LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITM 139 (337)
T ss_dssp --------EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCC
T ss_pred --------EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcce
Confidence 11111 1 223567899999999988886 579999999998887777664 446788
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC---------------------
Q 006220 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------- 527 (656)
Q Consensus 469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--------------------- 527 (656)
++|+|+|++++++ ++.|++||+.+++.+..+..+.. ...+.|+|++.+++.++..+
T Consensus 140 ~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T 1pby_B 140 LAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp EEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred eEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence 9999999988888 68999999999988877764431 12337899988776554332
Q ss_pred ---cEEEEeCCCCeeE-EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220 528 ---TVRLWDVSSGECV-RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL 603 (656)
Q Consensus 528 ---~V~iwd~~~~~~~-~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 603 (656)
.|.+||+.+++.. ..+..+...+.+++|+|+|++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++
T Consensus 217 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred cccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence 4689999998775 2344566678899999999999988 689999999999988877644 45789999999999
Q ss_pred EEEEECCCcEEEEeCCCCCceeecc
Q 006220 604 LASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 604 l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|++++.++.|.+||+.+++......
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9999999999999999987765543
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=4.5e-21 Score=221.45 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=192.4
Q ss_pred cceecCCCCCCceeEEEEeeCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCCcccccccCCCCCC
Q 006220 330 NRVHLSSAALPSVSFYTFINTHN---GLNCASISQDGSLVAGGFSD---------SSLKVWDMAKLGQQAVSSGLQGEND 397 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~---~V~~l~fs~dg~~La~g~~d---------g~I~Iwdl~~~~~~~~~~~~~~~~~ 397 (656)
..+++|+....... ..+..+.. .|.+++|||||++||+++.+ +.|.+||+.+...
T Consensus 37 g~i~~~d~~~g~~~-~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------ 103 (723)
T 1xfd_A 37 GTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------------ 103 (723)
T ss_dssp SCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------------
T ss_pred CCEEEEECCCCcEE-EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------------
Confidence 36788876554433 22333332 49999999999999999774 7788999875321
Q ss_pred CCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE-----------
Q 006220 398 TTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV----------- 466 (656)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V----------- 466 (656)
.......+|...+.+++|||||+.|++++. +.|++||+.++........+...+
T Consensus 104 --------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 104 --------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp --------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred --------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 111112245556889999999999999886 799999999887776655544333
Q ss_pred -------EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCceeEEecCC-
Q 006220 467 -------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPLRIMAGH- 504 (656)
Q Consensus 467 -------~~l~~sp~~~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~~~~~~~- 504 (656)
.+++|||+|++|++++.|+ .|++||+.+++....+..+
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 7899999999999988653 7999999988766666654
Q ss_pred -----CCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeeEEEEec-CCCCe----EEEEEcCCCCEEEE--EECC
Q 006220 505 -----LSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGECVRIFIG-HRSMI----LSLAMSPDGRYMAS--GDED 568 (656)
Q Consensus 505 -----~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~~~~~~~~-h~~~i----~~l~~sp~g~~L~s--~~~d 568 (656)
...+.+++|+|+|+++++.+. +..|++||+.++++...+.. +.+.+ ..++|||||+.|+. +..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 567899999999998877653 35799999999988776654 33444 37899999997765 4566
Q ss_pred C------cEEEEe-CCCCe--eeEeeeCCCccEEE-EEEcCCCCEEEEEECC---CcEEEEeCCCC
Q 006220 569 G------TIMMWD-LASGR--CVTPLMGHTSCVWT-LAYSCEGSLLASGSAD---CTVKLWDVTTS 621 (656)
Q Consensus 569 g------~I~iwD-~~~~~--~~~~~~~h~~~V~~-l~~s~~~~~l~sgs~D---g~I~iWd~~~~ 621 (656)
+ .|.+|| ...+. +...+..+...+.. ++|+|+|+.|+..+.+ +.+++|++...
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 6 577788 34443 15555544444554 6999999999877665 78999998754
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.3e-20 Score=196.56 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=182.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEccCCC
Q 006220 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGD 434 (656)
Q Consensus 356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~ 434 (656)
.+++++++.++++++.++.|.+||+.+. .....+..+. ..+..++|+|+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~ 55 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD----------------------------TVYKSCVMPDKFGPGTAMMAPDNR 55 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT----------------------------EEEEEEECSSCCSSCEEEECTTSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC----------------------------cEEEEEecCCCCCCceeEECCCCC
Confidence 4567889999999999999999998752 1222222222 2567899999998
Q ss_pred EE-EEEeCCCeEEEEeccCCceeEEeeCCC------ccEEEEEEecCCCEEEEEECC------------CcEEEEECCCC
Q 006220 435 FI-LSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHD------------RTARIWSMDRI 495 (656)
Q Consensus 435 ~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~sgs~D------------g~i~lwd~~~~ 495 (656)
.+ ++++.++.|.+||+.+++.+..+..+. ..+.+++|+|+|+++++++.+ +.|.+||+.++
T Consensus 56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 65 455678999999999888877665332 237889999999999999865 89999999874
Q ss_pred c---eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-------------------------
Q 006220 496 Q---PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------------------- 547 (656)
Q Consensus 496 ~---~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------------------------- 547 (656)
+ .+..+.. ...+.+++|+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 136 ~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 3 3444443 34689999999999 66654 349999999988877664331
Q ss_pred -------------------------------------------CCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 548 -------------------------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 548 -------------------------------------------~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
..+.+++|+| +|++++++ ++.|.+||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345677889 99999988 8899999999999887
Q ss_pred eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 584 ~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+... ..+.+++|+|++++|++++.++.|++||+.+++.+...
T Consensus 290 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 290 AANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 77643 34679999999998888888999999999988766544
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=2.8e-20 Score=193.37 Aligned_cols=228 Identities=13% Similarity=0.194 Sum_probs=167.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC-C
Q 006220 365 LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD-T 443 (656)
Q Consensus 365 ~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D-g 443 (656)
++++++.++.|++|++...+. . .......|...+.+++|+|++++|++++.+ +
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 60 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------------------------L-TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF 60 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------------------------E-EEEEEEECSSCCCCEEECTTSSEEEEEETTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc-------------------------E-EEeeeEecCCCCceEEECCCCCEEEEeecCCC
Confidence 445557899999999863110 1 112223577788999999999998888876 9
Q ss_pred eEEEEecc--CCce--eEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECC---CCceeEEecCCCCCeeEEEEcC
Q 006220 444 TIRLWSTK--LNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHI 515 (656)
Q Consensus 444 ~I~lwd~~--~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p 515 (656)
.|.+|++. ++.. +..+..+. .+.+++|+|+++++++++. ++.|.+||+. ....+..+..+ ..+.+++|+|
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred eEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 99999998 4443 34444444 7889999999998877765 8899999994 33445555444 5689999999
Q ss_pred CCCEEEEEE-CCCcEEEEeCCC-CeeEE----EEec-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC--Cee--eE
Q 006220 516 NCNYIATGS-SDKTVRLWDVSS-GECVR----IFIG-HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS--GRC--VT 583 (656)
Q Consensus 516 ~~~~l~tgs-~dg~V~iwd~~~-~~~~~----~~~~-h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~--~~~--~~ 583 (656)
+++++++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|.+||+.. ++. ..
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 999998887 899999999987 65432 2233 344788999999999776655 789999999953 432 22
Q ss_pred eee----CC--CccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCC
Q 006220 584 PLM----GH--TSCVWTLAYSCEGSLLASG-SADCTVKLWDVTT 620 (656)
Q Consensus 584 ~~~----~h--~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~ 620 (656)
... ++ ...+.+++|+|+|++|+++ ..++.|.+||+..
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 222 11 2357789999999887754 4789999999983
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.5e-21 Score=225.57 Aligned_cols=234 Identities=11% Similarity=0.083 Sum_probs=181.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc---CEEEEEE
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASF 429 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~ 429 (656)
.+.+++|||||+++++ +.||.|++||+.+.. ....+.+|.. .|.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~----------------------------~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT----------------------------STVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC----------------------------CEEEECTTTTTTTTCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc----------------------------EEEEeccccccccccceEEE
Confidence 3678899999998876 689999999987521 2233344543 4899999
Q ss_pred ccCCCEEEEEeCC---------CeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 430 SPLGDFILSSSAD---------TTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 430 spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
||||++|++++.+ +.|.+||+.+++. ..+. +|...+..++|||+|+.|++++. +.|++||+.+++.
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 9999999998874 7889999998876 3333 34445889999999999999986 7999999999888
Q ss_pred eEEecCCCCCe------------------eEEEEcCCCCEEEEEECCC--------------------------------
Q 006220 498 LRIMAGHLSDV------------------DCVRWHINCNYIATGSSDK-------------------------------- 527 (656)
Q Consensus 498 ~~~~~~~~~~V------------------~~v~~~p~~~~l~tgs~dg-------------------------------- 527 (656)
......+...+ .+++|+|+|++|++++.++
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 77766544433 7899999999999987553
Q ss_pred --cEEEEeCCCCeeEEEEecC------CCCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeeeEeeeC-CCccE--
Q 006220 528 --TVRLWDVSSGECVRIFIGH------RSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGRCVTPLMG-HTSCV-- 592 (656)
Q Consensus 528 --~V~iwd~~~~~~~~~~~~h------~~~i~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~~~~~~~-h~~~V-- 592 (656)
.|++||+.+++....+..+ ...+.+++|||||++|++.+. +..|++||+.++++...+.. +.+.+
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 306 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR 306 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec
Confidence 7999999998876666654 567899999999999877653 35799999999987766543 33333
Q ss_pred --EEEEEcCCCCEEEE--EECCC------cEEEEe
Q 006220 593 --WTLAYSCEGSLLAS--GSADC------TVKLWD 617 (656)
Q Consensus 593 --~~l~~s~~~~~l~s--gs~Dg------~I~iWd 617 (656)
.+++|+|||+.|+. +..++ .|.+||
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 37899999997765 45677 577777
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.9e-19 Score=188.16 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=191.2
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAG-GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~-g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (656)
.+.+|+....... ........+.+++|+|+|+++++ +..++.|.+||..+....
T Consensus 70 ~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----------------------- 124 (353)
T 3vgz_A 70 VVYRLDPVTLEVT--QAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK----------------------- 124 (353)
T ss_dssp EEEEECTTTCCEE--EEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------------------
T ss_pred cEEEEcCCCCeEE--EEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-----------------------
Confidence 4566655433322 22233455889999999996555 455799999998753221
Q ss_pred CceeeEEeecCc---------cCEEEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220 410 RKRSYTLYQGHS---------GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478 (656)
Q Consensus 410 ~~~~~~~l~~h~---------~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 478 (656)
..+..+. ..+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+|.++
T Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 125 -----GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp -----EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred -----EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 1111111 1368899999999877665 47899999999998888887666668899999999999
Q ss_pred EEEECCCcEEEEECCCCceeEEecC----CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 479 ASSSHDRTARIWSMDRIQPLRIMAG----HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 479 ~sgs~Dg~i~lwd~~~~~~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
++++.++.+.+||+.+++.+..+.. +...+.+++|+|+++++++++.+ +.|.+||..+++.+..+..... ..+
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~ 277 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAV 277 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCE
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceE
Confidence 9999999999999999988877663 45567889999999988777654 8999999999998888775432 569
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC
Q 006220 554 AMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 554 ~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
+|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999999766655 6899999999999988887654 4679999999999777766553
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=3.6e-20 Score=192.40 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=177.9
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220 357 ASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (656)
Q Consensus 357 l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~ 435 (656)
..|.+++.+ +++++.++.|.+||+.+. ........+...+ +++|+|++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~-~~~~s~dg~~ 53 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL----------------------------EILNQITLGYDFV-DTAITSDCSN 53 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC----------------------------CEEEEEECCCCEE-EEEECSSSCE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc----------------------------ceeeeEEccCCcc-eEEEcCCCCE
Confidence 345666555 667778999999998752 1222333445556 9999999997
Q ss_pred EEEEeC-CCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecCCCCCeeE
Q 006220 436 ILSSSA-DTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 436 L~s~s~-Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg---~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
+++++. ++.|.+||+.++.. ...+..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+
T Consensus 54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred EEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 766655 89999999999887 777777777776699999999999555553 8999999999888877654 45789
Q ss_pred EEEcCCCCEEEEE-ECCCc-EEEEeCCCCeeE----EEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee--
Q 006220 511 VRWHINCNYIATG-SSDKT-VRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC-- 581 (656)
Q Consensus 511 v~~~p~~~~l~tg-s~dg~-V~iwd~~~~~~~----~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~-- 581 (656)
++|+|+|++++++ ..++. |.+|++.....+ ............++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9999999866655 55588 999998764433 12223445689999999999766554 689999999999888
Q ss_pred -eEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCc
Q 006220 582 -VTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK 623 (656)
Q Consensus 582 -~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~ 623 (656)
+..+..+ ..+.+++|+|+|++++.++ .++.|.+||+.+++.
T Consensus 213 ~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 213 LLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 7776644 5668899999999776554 578899999988765
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.5e-20 Score=216.54 Aligned_cols=239 Identities=15% Similarity=0.178 Sum_probs=185.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|.+++|||| +.++.+ .++.|++||+.+. ....+..+.+.+.+++|||
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~-----------------------------~~~~l~~~~~~~~~~~~Sp 130 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR-----------------------------KVTYLFDTNEETASLDFSP 130 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT-----------------------------EEEEEECCTTCCTTCEECT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC-----------------------------ceEEccCCcccccCCcCCC
Confidence 56999999999 666666 4599999998641 2233445667788999999
Q ss_pred CCCEEEEEeCCCeEEEEeccC-----CceeEEeeCCCcc--------------EEEEEEecCCCEEEEEE----------
Q 006220 432 LGDFILSSSADTTIRLWSTKL-----NANLVCYKGHNYP--------------VWDVQFNPQGHYFASSS---------- 482 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~h~~~--------------V~~l~~sp~~~~l~sgs---------- 482 (656)
||+.|+++ .++.|++|++.+ +........+... +.+++|+|+|++|++++
T Consensus 131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 99999985 679999999998 7665544433332 48899999999999998
Q ss_pred -----------------------CCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCC-----cEEEE
Q 006220 483 -----------------------HDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDK-----TVRLW 532 (656)
Q Consensus 483 -----------------------~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iw 532 (656)
.+..|++||+.+++...... .|...+.+++|+|+|++|++++.++ .|++|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 44689999999887655443 4667799999999999999988776 89999
Q ss_pred eCCCCeeEEEEe-c-CCC---CeEEEEEcC--CCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEE-EEEcCCCCE
Q 006220 533 DVSSGECVRIFI-G-HRS---MILSLAMSP--DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWT-LAYSCEGSL 603 (656)
Q Consensus 533 d~~~~~~~~~~~-~-h~~---~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~-l~~s~~~~~ 603 (656)
|+.+++....+. . +.. .+.+++|+| +|+++++++.||.++||++. ++..+..+..|...+.+ ++|+|+|+.
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 999994433332 2 222 246789999 99999999999999999886 67777888888878877 799999998
Q ss_pred EEEEECC-C----cEEEEeCCCCC
Q 006220 604 LASGSAD-C----TVKLWDVTTST 622 (656)
Q Consensus 604 l~sgs~D-g----~I~iWd~~~~~ 622 (656)
|+.++.+ + .|..||+.++.
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEEecCCCCceEEEEEEEcCCCC
Confidence 7766554 3 56677776654
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.2e-20 Score=227.27 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=200.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc-
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS- 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s- 430 (656)
..+.+.+|||||++||++ .++.|.+|++..... .. .... ..........|.+.|.+++|+
T Consensus 245 ~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~---l~~~--------------~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 245 TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EK---IEIG--------------DLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EE---CCCC--------------CCCBCCSEEEECGGGGEEEEEE
T ss_pred CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-ee---eccC--------------cccccccccccccccceeeecC
Confidence 357788999999999988 589999999842111 00 0000 000011123467789999999
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-cEEEEEEecCCCEEEEEECCCcEE-EEECCCCceeEEecCCCCCe
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSSHDRTAR-IWSMDRIQPLRIMAGHLSDV 508 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~sgs~Dg~i~-lwd~~~~~~~~~~~~~~~~V 508 (656)
|+|++|++++ ++.|.+|++.++... .+..|.. .+.+++|+ +|..+++++.++.+. +|++..++.... .+|...+
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~ 381 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNV 381 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccce
Confidence 9999999888 789999999876544 4566776 89999999 999999999988888 999987765544 4788899
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC----------cEEEEeCCC
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----------TIMMWDLAS 578 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg----------~I~iwD~~~ 578 (656)
.+++|+|+|++|++++.++.|++||+.+++......+|.+.+.+++|||||++|++++.++ .|++||+.+
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 9999999999999999999999999999999888888999999999999999999887654 899999998
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
++ +..+..|...+.+++|+|+|++|++++.++...+|+....
T Consensus 462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 87 6677788888999999999999999999999899987643
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.3e-19 Score=187.10 Aligned_cols=244 Identities=12% Similarity=0.153 Sum_probs=175.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSD----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~d----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+......++|+|||++|++++.+ +.|.+|++.... +..........+.....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------------g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------------GTLHLLNTQKTMGADPC 103 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------------TEEEEEEEEECSSSCEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------------CcEEEeeEeccCCCCcE
Confidence 56678889999999999998875 799999987410 11122233334555677
Q ss_pred EEEEccCCCEEEEEe-CCCeEEEEeccCCceeEE------eeC--------CCccEEEEEEecCCCEEEEEE-CCCcEEE
Q 006220 426 SASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC------YKG--------HNYPVWDVQFNPQGHYFASSS-HDRTARI 489 (656)
Q Consensus 426 ~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~------~~~--------h~~~V~~l~~sp~~~~l~sgs-~Dg~i~l 489 (656)
.+++ ++++|++++ .+++|.+|++.....+.. ..+ +...+.+++|+|+|+++++++ .++.+.+
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 7888 788777666 688999999975433211 111 123458899999999776665 5889999
Q ss_pred EECCCCce------e-------EEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeE--EEEe---cCCCCe
Q 006220 490 WSMDRIQP------L-------RIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECV--RIFI---GHRSMI 550 (656)
Q Consensus 490 wd~~~~~~------~-------~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~--~~~~---~h~~~i 550 (656)
|+++.... + .....+...+..++|+|+|+++++++ .++.|.+||+.++... ..+. .+....
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence 99875431 1 22234456688999999999888877 6899999999877552 2222 233457
Q ss_pred EEEEEcCCCCEEEEEECC--CcEEEEeCC--CCe--eeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220 551 LSLAMSPDGRYMASGDED--GTIMMWDLA--SGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~d--g~I~iwD~~--~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~ 620 (656)
..++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++..
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 899999999998776654 899999995 444 4444444 45678999999999888887 678999976653
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=7.3e-21 Score=214.39 Aligned_cols=230 Identities=12% Similarity=0.019 Sum_probs=178.1
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEc
Q 006220 353 GLNCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFS 430 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s 430 (656)
.|.+++|+|||+.||+++. ||.++||++.+. ....+..|. ..|.+++|+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------------------------~~~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------------------------ETVKLNREPINSVLDPHYG 73 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------------------------EEEECCSSCCSEECEECTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------------------------CcEeeecccccccccccCC
Confidence 5899999999999999877 999999997531 223334444 689999999
Q ss_pred cCCCEEEEEeC---CCeEEEEeccC--CceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecCC
Q 006220 431 PLGDFILSSSA---DTTIRLWSTKL--NANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 431 pd~~~L~s~s~---Dg~I~lwd~~~--~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
|| +.+++++. +...++|.+.. ......+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.......+
T Consensus 74 pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~ 151 (582)
T 3o4h_A 74 VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP 151 (582)
T ss_dssp CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence 99 77777765 45567766543 22222333222 3446688888753 333344455569999988766655443
Q ss_pred CCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCC
Q 006220 505 LSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLAS 578 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg--~I~iwD~~~ 578 (656)
. .+++|+|+|++|++++.+ +.|++||+.+++.. .+..|.+.+..++|||||++|+++..+| .|++||+.+
T Consensus 152 ~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 152 G---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp S---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred C---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 3 889999999999988877 78999999988765 5678888999999999999999888888 899999999
Q ss_pred CeeeEeeeCCCccEEEEE--------EcCCCCEEEEEECCCcEEEEeC
Q 006220 579 GRCVTPLMGHTSCVWTLA--------YSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~--------~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
++.. .+.+|...+.+++ |+|||.++++++.||++++|++
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8887 7777877777777 9999999999999999999999
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2.9e-21 Score=209.75 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=161.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCC----------ceeE-----EeeCCCccEEEEEEecCCCEEE----EEE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLV-----CYKGHNYPVWDVQFNPQGHYFA----SSS 482 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----------~~~~-----~~~~h~~~V~~l~~sp~~~~l~----sgs 482 (656)
..+..+++++++.++++++.++ |++|+.... ..+. ....+...|.+++|+|+|++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999887 999875421 0111 1123566799999999999999 788
Q ss_pred CCCcEEEEECCCC--------ce---eEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCe
Q 006220 483 HDRTARIWSMDRI--------QP---LRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI 550 (656)
Q Consensus 483 ~Dg~i~lwd~~~~--------~~---~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i 550 (656)
.|++|++||+.+. ++ +..+.+|...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998654 22 4556679999999999997 8999999999999999999998877778899999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-------CccEEEEEEcCCCCEEEEE-ECCCc------EEEE
Q 006220 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASG-SADCT------VKLW 616 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~sg-s~Dg~------I~iW 616 (656)
++++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.++++. +.||. +++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 6655555433 3389999999988877553 34433 8999
Q ss_pred eCCCCC
Q 006220 617 DVTTST 622 (656)
Q Consensus 617 d~~~~~ 622 (656)
++.+..
T Consensus 275 ~l~~~~ 280 (434)
T 2oit_A 275 LLPKKE 280 (434)
T ss_dssp ECCCTT
T ss_pred EeccCC
Confidence 998653
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=4.3e-20 Score=212.85 Aligned_cols=274 Identities=13% Similarity=0.116 Sum_probs=197.8
Q ss_pred cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CCcccccccCCCCCCCCCCccc
Q 006220 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK-----LGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~-----~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
..+++|+..... ...+..+...+.+++|||||++||++ .++.|++|++.+ ........... ..+
T Consensus 101 ~~i~~~d~~~~~--~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~--------~~~ 169 (706)
T 2z3z_A 101 GGLVGFDMLARK--VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT--------ETL 169 (706)
T ss_dssp TEEEEEETTTTE--EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB--------TTE
T ss_pred CEEEEEECCCCc--eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC--------CCe
Confidence 567777765443 33455567789999999999999996 789999999875 32211100000 000
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe---------------------------------CCCeEEEEecc
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS---------------------------------ADTTIRLWSTK 451 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s---------------------------------~Dg~I~lwd~~ 451 (656)
.. +.. ....+.+.+.++.|||||++|++++ .++.|++||+.
T Consensus 170 ~~----g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 170 VY----GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp EE----SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred Ec----ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 00 000 1122334468899999999999887 44689999999
Q ss_pred CCceeEEee--CCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCceeEEec--CCCC---CeeEEEEcC--CC
Q 006220 452 LNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLRIMA--GHLS---DVDCVRWHI--NC 517 (656)
Q Consensus 452 ~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~~~~~--~~~~---~V~~v~~~p--~~ 517 (656)
++....... .|...+.+++|+|+|+++++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg 323 (706)
T 2z3z_A 244 TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN 323 (706)
T ss_dssp TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence 877544332 4667899999999999999988776 89999999884333332 2222 246789999 99
Q ss_pred CEEEEEECCCcEEEEeCC-CCeeEEEEecCCCCeEE-EEEcCCCCEEEEEECC-C----cEEEEeCCCCeeeEeeeCCCc
Q 006220 518 NYIATGSSDKTVRLWDVS-SGECVRIFIGHRSMILS-LAMSPDGRYMASGDED-G----TIMMWDLASGRCVTPLMGHTS 590 (656)
Q Consensus 518 ~~l~tgs~dg~V~iwd~~-~~~~~~~~~~h~~~i~~-l~~sp~g~~L~s~~~d-g----~I~iwD~~~~~~~~~~~~h~~ 590 (656)
+++++++.|+.+++|++. ++..+..+..|...+.+ ++|+|+|+.|+.++.+ + .|..||+.++. ...+ .|..
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~ 401 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPES 401 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSS
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCC
Confidence 999999999999999886 67778888888888877 7999999988765544 3 67777877765 3334 3667
Q ss_pred cEEEEEEcCCCCEEEEEECC----CcEEEEeCCCCC
Q 006220 591 CVWTLAYSCEGSLLASGSAD----CTVKLWDVTTST 622 (656)
Q Consensus 591 ~V~~l~~s~~~~~l~sgs~D----g~I~iWd~~~~~ 622 (656)
.+.+++|+|+|++++.++.+ +.|++||+.+++
T Consensus 402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 79999999999988876544 569999998875
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=5.6e-20 Score=221.46 Aligned_cols=243 Identities=12% Similarity=0.142 Sum_probs=198.2
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
..+.+|...+.++.|+++ .+++++..+|.++||.+.... .....+..|. .+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g---------------------------~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG---------------------------KDLRKHTSFT-DY 247 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS---------------------------CSCEECCCCC-SS
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC---------------------------CcceEecCCC-Cc
Confidence 345778889999999998 677778888999999876311 1112233343 35
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-----------CCccEEEEEEe-cCCCEEEEEECCCcEEEEEC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----------HNYPVWDVQFN-PQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----------h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~ 492 (656)
.+++|+|+|+.|++++ ++.|++|++.. ..+..+.+ |...+.+++|+ |+|.++++++ ++.+++|++
T Consensus 248 ~~~~~SpDG~~la~~~-~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK-GGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEEE-TTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEEe-CCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 6779999999998874 88999999954 34445444 34468999999 9999999988 789999999
Q ss_pred CCCceeEEecCCCC-CeeEEEEcCCCCEEEEEECCCcEE-EEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 493 DRIQPLRIMAGHLS-DVDCVRWHINCNYIATGSSDKTVR-LWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 493 ~~~~~~~~~~~~~~-~V~~v~~~p~~~~l~tgs~dg~V~-iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
..+.... +..|.. .+.+++|+ +|+.|++++.++.+. +||+.++..... .+|...+.+++|||||++|++++.++.
T Consensus 325 ~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 325 SGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp TSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCe
Confidence 8776544 566777 89999999 999999999888898 999988766544 478889999999999999999999999
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC----------cEEEEeCCCCC
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC----------TVKLWDVTTST 622 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg----------~I~iWd~~~~~ 622 (656)
|++||+.+++......+|.+.+.+++|||||++|++++.++ .|++||+.+++
T Consensus 402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999988877778999999999999999999887654 89999998865
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=1.4e-18 Score=179.92 Aligned_cols=230 Identities=10% Similarity=0.113 Sum_probs=175.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-cCcc-CEEEEEEccCCCEE-EEEe
Q 006220 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHSG-PVYSASFSPLGDFI-LSSS 440 (656)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V~~l~~spd~~~L-~s~s 440 (656)
++|++++.++.|.+||+.+. .....+. ++.. .+.+++|+|+++.+ ++++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 53 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVN 53 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCC----------------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeC
Confidence 47899999999999998642 1222222 2222 47789999999865 5566
Q ss_pred CCCeEEEEeccCCceeEEeeCC-----CccEEEEEEecCCCEEEEEE------------CCCcEEEEECCCCceeEEecC
Q 006220 441 ADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSS------------HDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~sgs------------~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
.++.|.+||+.+++.+..+... ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+..
T Consensus 54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 6889999999998887666532 22577899999999998886 579999999999888877764
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------
Q 006220 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG-------------- 569 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg-------------- 569 (656)
...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|+|+.++.++..+
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence 4568889999999988888 689999999999988877654411 1237899998776554332
Q ss_pred ----------cEEEEeCCCCeee-EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 570 ----------TIMMWDLASGRCV-TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 570 ----------~I~iwD~~~~~~~-~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|.+||+.+++.....
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 4789999998764 2234566778899999999999888 799999999887655433
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1.2e-18 Score=184.55 Aligned_cols=242 Identities=11% Similarity=0.031 Sum_probs=172.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMA-KLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
..+..++|+|||++|++++.+ .|.+|++. .... ........+ +.+.+++|+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--------------------------~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--------------------------VHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--------------------------EEEEEEECC-SSGGGGCTT
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--------------------------EEeeEeecC-CCCccEEEC
Confidence 468899999999999988877 99999986 2110 001111111 224458999
Q ss_pred cCCCE--EEEEe-------------CCCeEEEEeccC-CceeEEee----CCCccEEEEEEecCCCEEEEEEC-CCcEEE
Q 006220 431 PLGDF--ILSSS-------------ADTTIRLWSTKL-NANLVCYK----GHNYPVWDVQFNPQGHYFASSSH-DRTARI 489 (656)
Q Consensus 431 pd~~~--L~s~s-------------~Dg~I~lwd~~~-~~~~~~~~----~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~l 489 (656)
|+|++ +++++ .+|++.+|++.. +.....+. .+...+.+++|+|+|+++++++. ++.|++
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 99994 45553 689999999973 55433333 24567899999999998887764 689999
Q ss_pred EECC-CCcee--EEec--CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCeeEE---EEe-------cCCC---
Q 006220 490 WSMD-RIQPL--RIMA--GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS--SGECVR---IFI-------GHRS--- 548 (656)
Q Consensus 490 wd~~-~~~~~--~~~~--~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~--~~~~~~---~~~-------~h~~--- 548 (656)
|+++ +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++... .+. +|..
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 9998 66543 2333 24567899999999999988775 6899999765 565432 222 1222
Q ss_pred ---CeEEEE-EcCCCCEEEEEECC-C-----cEEEEeCC-CCeeeE---eeeCCCccEEEEEEcC---CCCEEEEEECC-
Q 006220 549 ---MILSLA-MSPDGRYMASGDED-G-----TIMMWDLA-SGRCVT---PLMGHTSCVWTLAYSC---EGSLLASGSAD- 610 (656)
Q Consensus 549 ---~i~~l~-~sp~g~~L~s~~~d-g-----~I~iwD~~-~~~~~~---~~~~h~~~V~~l~~s~---~~~~l~sgs~D- 610 (656)
.+..++ |+|||++|++++.+ + .|.+|++. +++... ....+...+..++|+| +|++|++++.+
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~ 331 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE 331 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC
Confidence 488999 99999998876543 2 89999996 565443 2333445567889999 89999998865
Q ss_pred CcEEEEeCCCC
Q 006220 611 CTVKLWDVTTS 621 (656)
Q Consensus 611 g~I~iWd~~~~ 621 (656)
+.|.+|++...
T Consensus 332 ~~v~v~~~~~~ 342 (365)
T 1jof_A 332 GWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEEETT
T ss_pred CeEEEEEEchh
Confidence 89999999765
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=209.91 Aligned_cols=236 Identities=13% Similarity=0.149 Sum_probs=173.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc---CEEEEEEccC
Q 006220 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG---PVYSASFSPL 432 (656)
Q Consensus 356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spd 432 (656)
+++|+|||++++++ .|+.|++||+.+. .....+.+|.. .|.+++||||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g----------------------------~~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG----------------------------QSYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC----------------------------CEEEEECHHHHHTTTCSEEEECTT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC----------------------------cEEEEEccccccccceeeEEECCC
Confidence 67899999766655 7999999998752 12223333433 4889999999
Q ss_pred CCEEEEEeC---------CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220 433 GDFILSSSA---------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (656)
Q Consensus 433 ~~~L~s~s~---------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~- 502 (656)
|++|++++. +++|++||+.+++.+.... ....+.+++|||+|+.|++++ ++.|++|++.+++..+...
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 999998876 7899999999886621011 124688999999999999986 7899999998877655432
Q ss_pred CCCCC-----------------eeEEEEcCCCCEEEEEECCC----------------------------------cEEE
Q 006220 503 GHLSD-----------------VDCVRWHINCNYIATGSSDK----------------------------------TVRL 531 (656)
Q Consensus 503 ~~~~~-----------------V~~v~~~p~~~~l~tgs~dg----------------------------------~V~i 531 (656)
++... ..+++|+|+|++|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 22221 25899999999999987652 7889
Q ss_pred EeCCCCeeE---EE-----EecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEe----CCCCeeeEee----eCCCcc
Q 006220 532 WDVSSGECV---RI-----FIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWD----LASGRCVTPL----MGHTSC 591 (656)
Q Consensus 532 wd~~~~~~~---~~-----~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD----~~~~~~~~~~----~~h~~~ 591 (656)
||+.+++.. .. +.+|...+.+++||||++++++....+ .|.+|| +.++++...+ .+|.+.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 999988753 21 235778899999999988777754332 489999 8888776655 467766
Q ss_pred EE-----EEEEcCCCCEEEE--EECCC--cEEEEeCCCCC
Q 006220 592 VW-----TLAYSCEGSLLAS--GSADC--TVKLWDVTTST 622 (656)
Q Consensus 592 V~-----~l~~s~~~~~l~s--gs~Dg--~I~iWd~~~~~ 622 (656)
+. ++.|+|||+.++. +..+| .|.+||+..+.
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 66 7899999996544 44555 57777776654
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.3e-17 Score=174.58 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=146.5
Q ss_pred ecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEE
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS 491 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd 491 (656)
..+...+..++|+|+|+ |++++. ++.|.+|++.++.. +..+..+...+..++|+|+|+++++++ .++++.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34556678899999999 555554 68999999987653 344445677788999999999998888 789999999
Q ss_pred CCCC---ceeEEecC---------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeEE--EEecC-CCCeEEEEE
Q 006220 492 MDRI---QPLRIMAG---------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVR--IFIGH-RSMILSLAM 555 (656)
Q Consensus 492 ~~~~---~~~~~~~~---------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~~~--~~~~h-~~~i~~l~~ 555 (656)
+... ..+..+.. +...+.+++|+|+|+.++++..++.|++||+. ++.... .+..+ ...+..++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 9632 22333321 12348889999999966666678899999998 554332 22322 236788999
Q ss_pred cCCCCEEEE-EECCCcEEEEeCCC--Cee--eEeeeCCC------ccEEEEEEcCCCCEE-EEEECCCcEEEEeCCC
Q 006220 556 SPDGRYMAS-GDEDGTIMMWDLAS--GRC--VTPLMGHT------SCVWTLAYSCEGSLL-ASGSADCTVKLWDVTT 620 (656)
Q Consensus 556 sp~g~~L~s-~~~dg~I~iwD~~~--~~~--~~~~~~h~------~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~ 620 (656)
+|+|++|++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| +++..++.|.+|++..
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 999997666 45688999999874 543 22333222 458899999999977 5566789999999974
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.1e-18 Score=194.24 Aligned_cols=246 Identities=10% Similarity=0.021 Sum_probs=182.1
Q ss_pred ceecCCCCCCceeEEEEeeCC-CCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CCcccccccCCCCCCCCCCccc
Q 006220 331 RVHLSSAALPSVSFYTFINTH-NGLNCASISQDGSLVAGGFS---DSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~-~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~--~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
.+.+|... ......+..++ ..+.+++|||| ++++++.. +...+||.+.. .+.
T Consensus 45 ~~~lw~~~--~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~------------------- 102 (582)
T 3o4h_A 45 SVNAYLYD--GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE------------------- 102 (582)
T ss_dssp EEEEEEEE--TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC-------------------
T ss_pred ceeEEEEc--CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc-------------------
Confidence 45566532 22233445555 57999999999 77777765 45567776642 110
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs 482 (656)
.. .+..+ ..+...+|+|+++ .+++++.+ .+.+||+.+++.......+. ++++|+|+|+++++++
T Consensus 103 ------~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 103 ------EQ---RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp ------CE---ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred ------cc---cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 01 11111 1233568888886 34444444 45699999887655544333 8899999999999888
Q ss_pred CC----CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEecCCCCeEEEE--
Q 006220 483 HD----RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSMILSLA-- 554 (656)
Q Consensus 483 ~D----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~-- 554 (656)
.+ +.|++||+.+++.. .+..|...+..++|+|+|+.|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence 77 78999999887755 5677888899999999999999888888 8999999999887 7777877777777
Q ss_pred ------EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeCCC
Q 006220 555 ------MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTT 620 (656)
Q Consensus 555 ------~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~~~ 620 (656)
|+|||.++++++.||.+++|++ |+... .+.+.|.+++|+ +++++++++.+.+ |.+||...
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 76654 344678999999 9999999887754 77777654
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=7.5e-17 Score=169.83 Aligned_cols=198 Identities=13% Similarity=0.182 Sum_probs=144.1
Q ss_pred CccCEEEEEEccCCCEEEEEeCC----CeEEEEeccCC--ce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEE
Q 006220 420 HSGPVYSASFSPLGDFILSSSAD----TTIRLWSTKLN--AN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW 490 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~--~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw 490 (656)
+...+..++|+|++++|++++.+ +.|.+|++... .. +.....+......+++ +++++++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66777889999999999998886 79999998763 22 3333445556677777 788877776 68899999
Q ss_pred ECCCCceeEE------ecC--------CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe-------e------EEE
Q 006220 491 SMDRIQPLRI------MAG--------HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE-------C------VRI 542 (656)
Q Consensus 491 d~~~~~~~~~------~~~--------~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~-------~------~~~ 542 (656)
++.....+.. ..+ +...+.+++|+|+|+++++++ .++.|++|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 111 123357899999999777665 47899999887543 1 122
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee--eEeee---CCCccEEEEEEcCCCCEEEEEECC--CcEE
Q 006220 543 FIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC--VTPLM---GHTSCVWTLAYSCEGSLLASGSAD--CTVK 614 (656)
Q Consensus 543 ~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~--~~~~~---~h~~~V~~l~~s~~~~~l~sgs~D--g~I~ 614 (656)
...+...+..++|+|+|+++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|+|++|++++.+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233445678999999999888877 689999999987754 23332 334557899999999988776654 8999
Q ss_pred EEeCC
Q 006220 615 LWDVT 619 (656)
Q Consensus 615 iWd~~ 619 (656)
+|++.
T Consensus 286 v~~~~ 290 (361)
T 3scy_A 286 IFKVD 290 (361)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99996
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=4.8e-17 Score=169.64 Aligned_cols=239 Identities=14% Similarity=0.134 Sum_probs=183.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 352 NGLNCASISQDGSLVAGGFSDS------------------------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg------------------------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
+.+.+++++++|++++++..++ .|.+||..+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------------------------- 78 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN------------------------- 78 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------
Confidence 5699999999999999988774 455555432
Q ss_pred CCCceeeEEe-ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEe---------eCCCccEEEEEEec-CC
Q 006220 408 NGRKRSYTLY-QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCY---------KGHNYPVWDVQFNP-QG 475 (656)
Q Consensus 408 ~~~~~~~~~l-~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~---------~~h~~~V~~l~~sp-~~ 475 (656)
....... .++-....+++++|+|+++++.+.++.|++|+..... .+..+ .++.....+++++| ++
T Consensus 79 ---g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 79 ---AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ---CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ---CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 1112222 2344678999999999988888889999999986442 44544 23444688999999 78
Q ss_pred CEEEEEE-CCCcEEEEECCCCceeEEecC----------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEE
Q 006220 476 HYFASSS-HDRTARIWSMDRIQPLRIMAG----------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIF 543 (656)
Q Consensus 476 ~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~----------~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~ 543 (656)
.++++.+ .++.|++|+ .++..+..+.. +......++++|+ ++++++...++.|++||..+|+.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 8888886 699999999 45566666642 2334889999998 777777778899999999989998887
Q ss_pred e--cCCCCeEEEEEcCCCCEEEEE-------ECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCC
Q 006220 544 I--GHRSMILSLAMSPDGRYMASG-------DEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 544 ~--~h~~~i~~l~~sp~g~~L~s~-------~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
. .+...+..++|+| |..+++. ..++.|.+||..+++.+..+. ++...+.+++++|+|.++++...++
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 4 4556788999999 4444333 334589999999999988873 5667799999999998888888999
Q ss_pred cEEEEeCCC
Q 006220 612 TVKLWDVTT 620 (656)
Q Consensus 612 ~I~iWd~~~ 620 (656)
.|++|++..
T Consensus 314 ~I~~~~~~~ 322 (329)
T 3fvz_A 314 TVWKFTLTE 322 (329)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEeCCc
Confidence 999999854
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=1.3e-16 Score=162.24 Aligned_cols=242 Identities=10% Similarity=0.186 Sum_probs=181.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE-c
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s 430 (656)
....+++++++++++++...++.|.+|+.... ....... .....+|...+.++++ .
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~----------------------~~~~~~~~~~p~~i~~~~ 86 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGE----------------------CGKRDSQLLYPNRVAVVR 86 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECC----------------------BSSSTTCBSSEEEEEEET
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecc----------------------cCCCcccccCceEEEEEc
Confidence 45899999999999998888999999997631 1000000 0000134567889999 4
Q ss_pred cCCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--CCCC
Q 006220 431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHLS 506 (656)
Q Consensus 431 pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~ 506 (656)
+++.++++... ++.|.+|+ .++..+..+.. +...+.+++++|+|+++++...++.|.+||.+ ++.+..+. ++..
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE 164 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence 66766666543 78999999 45666665543 34568899999999988887788999999965 45555553 4556
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeeeE
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDG-TIMMWDLASGRCVT 583 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~dg-~I~iwD~~~~~~~~ 583 (656)
.+.+++++|+++.+++.+.++.|++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+||. .++.+.
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~ 242 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS 242 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence 7899999999998887778999999997 56666666543 35789999999999888887776 9999995 677777
Q ss_pred eeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 584 ~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.+..+. ..+.+++++|+|+++++ +.|++|++|++...
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 776543 34789999999987777 67999999998653
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=5.4e-18 Score=196.64 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=173.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc-----CEEEE
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-----PVYSA 427 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l 427 (656)
...++.|+|||++++++ ||.|++|++.+.. ....+.+|.. ....+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 67 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----------------------------SSVFLENSTFDEFGHSINDY 67 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCC----------------------------EEEEECTTTTTTCCSCCCEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCc----------------------------eEEEEechhhhhhcccccce
Confidence 35688999999999987 9999999987632 1222334432 23458
Q ss_pred EEccCCCEEEEEeCC---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 428 SFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 428 ~~spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
+|||||++|++++.+ +.+.+||+.+++.. .+..|...+...+|||+|+.||.++ ++.|++|++.++...
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 899999999998876 56679999988754 3566777899999999999999885 689999999887755
Q ss_pred EEec-CCCC-----------------CeeEEEEcCCCCEEEEEECCC---------------------------------
Q 006220 499 RIMA-GHLS-----------------DVDCVRWHINCNYIATGSSDK--------------------------------- 527 (656)
Q Consensus 499 ~~~~-~~~~-----------------~V~~v~~~p~~~~l~tgs~dg--------------------------------- 527 (656)
+... ++.. ....+.|+|+|++|+.++.|.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 4322 2222 223589999999999875332
Q ss_pred ---cEEEEeCCC---C---eeEEEEe-----cCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCe----eeE--
Q 006220 528 ---TVRLWDVSS---G---ECVRIFI-----GHRSMILSLAMSPDGRYMASGDE----DGTIMMWDLASGR----CVT-- 583 (656)
Q Consensus 528 ---~V~iwd~~~---~---~~~~~~~-----~h~~~i~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~----~~~-- 583 (656)
.|++||+.+ + +...... +|...+..++|||||+.++.... +..|.+||+.+++ +..
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~ 305 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR 305 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence 488899988 7 3333222 37778999999999997766543 3379999999887 322
Q ss_pred ee--eCCCccEE-----EEEEcCCCCEEE-EEEC-C--CcEEEEeCCCCCc
Q 006220 584 PL--MGHTSCVW-----TLAYSCEGSLLA-SGSA-D--CTVKLWDVTTSTK 623 (656)
Q Consensus 584 ~~--~~h~~~V~-----~l~~s~~~~~l~-sgs~-D--g~I~iWd~~~~~~ 623 (656)
.+ .+|.+.|. +.+|+|||+.|+ ..+. + ..|++||+..+..
T Consensus 306 ~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 22 34554443 788999999877 6653 3 3588888876554
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.2e-17 Score=175.21 Aligned_cols=251 Identities=12% Similarity=0.020 Sum_probs=174.2
Q ss_pred eEEEEeeCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceee
Q 006220 343 SFYTFINTHNGLNC-----ASISQDGSLVAGGFS-DSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSY 414 (656)
Q Consensus 343 ~~~~~~~~~~~V~~-----l~fs~dg~~La~g~~-dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (656)
....+..+...... .+|||||++||.++. +|. |.+||+.+. ...
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g----------------------------~~~ 73 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ----------------------------VAT 73 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC----------------------------EEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC----------------------------ceE
Confidence 33444555545555 789999999999887 674 666776541 222
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEE--EecCCCEEEEEE----------
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSS---------- 482 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~sgs---------- 482 (656)
....+|...+.++.|+||++.|+.++.++.|++||+.+++....+..+...+.... ++|++.+++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 33344555555678999999999999999999999999988777776665554444 489999887532
Q ss_pred ------------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCeeEEEE
Q 006220 483 ------------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIF 543 (656)
Q Consensus 483 ------------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~V~iwd~~~~~~~~~~ 543 (656)
.+..|++||+.+++..... .+...+..++|+| +|+.|+.++.+ ..|.++|..++... .+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KV 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ES
T ss_pred ccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Ee
Confidence 4468999999988655444 4567789999999 99999887753 37888887765543 34
Q ss_pred ecCC--CCeEEEEEcCCCCEEEEEEC-CC----cEEEEeCCCCee--eEeeeCCCcc---EEEEEEcCCCCEEEEE----
Q 006220 544 IGHR--SMILSLAMSPDGRYMASGDE-DG----TIMMWDLASGRC--VTPLMGHTSC---VWTLAYSCEGSLLASG---- 607 (656)
Q Consensus 544 ~~h~--~~i~~l~~sp~g~~L~s~~~-dg----~I~iwD~~~~~~--~~~~~~h~~~---V~~l~~s~~~~~l~sg---- 607 (656)
..+. ..+..++|||||+.|+..+. ++ .|++||+.+++. +..+.++... ...+.|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 4444 25788999999997765443 22 399999998874 3333331111 1123699999887754
Q ss_pred -----ECCCcEEEEeCCCCCc
Q 006220 608 -----SADCTVKLWDVTTSTK 623 (656)
Q Consensus 608 -----s~Dg~I~iWd~~~~~~ 623 (656)
..+..|++||+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp -----CCCCEEEEEETTTTEE
T ss_pred cccccCCCCEEEEEeccCCce
Confidence 4567899999988654
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=200.35 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=184.2
Q ss_pred ccceecCCCCCCceeEEEEeeCCC----CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCcccccccCCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHN----GLNCASISQDGSLVAGGFS---------DSSLKVWDMAKLGQQAVSSGLQGE 395 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~----~V~~l~fs~dg~~La~g~~---------dg~I~Iwdl~~~~~~~~~~~~~~~ 395 (656)
...+++|+....... .+..++. .+.+++|||||++||+++. ++.|++||+.+......
T Consensus 35 d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------- 105 (719)
T 1z68_A 35 DNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------- 105 (719)
T ss_dssp TSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------
T ss_pred CCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------
Confidence 346778876555433 2333322 4899999999999999876 78999999875221000
Q ss_pred CCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccE--------
Q 006220 396 NDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPV-------- 466 (656)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V-------- 466 (656)
..+ ...+.+++|||||+.|++++ ++.|++|++.++...... .++...|
T Consensus 106 -------------------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 106 -------------------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp -------------------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred -------------------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 001 14578899999999999886 689999999887765432 2332222
Q ss_pred ---------EEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCcee---EE
Q 006220 467 ---------WDVQFNPQGHYFASSSHDR----------------------------------TARIWSMDRIQPL---RI 500 (656)
Q Consensus 467 ---------~~l~~sp~~~~l~sgs~Dg----------------------------------~i~lwd~~~~~~~---~~ 500 (656)
.+++|||||++|++++.|. .|++||+.+++.. ..
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 4899999999999988652 7889999887653 21
Q ss_pred -----ecCCCCCeeEEEEcCCCCEEEEEECCC----cEEEEe----CCCCeeEEEE----ecCCCCeE-----EEEEcCC
Q 006220 501 -----MAGHLSDVDCVRWHINCNYIATGSSDK----TVRLWD----VSSGECVRIF----IGHRSMIL-----SLAMSPD 558 (656)
Q Consensus 501 -----~~~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~sp~ 558 (656)
+.+|...+.+++|+|+++++++....+ .|.+|| +.++++...+ .+|...+. .+.|+||
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 235778899999999987777754332 488999 8888776555 46777776 8899999
Q ss_pred CCEEEE--EECCC--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 006220 559 GRYMAS--GDEDG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTT 620 (656)
Q Consensus 559 g~~L~s--~~~dg--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~ 620 (656)
|+.|+. +..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 996554 44555 57778887666 45566666678888777 88777776665 8899998864
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.4e-16 Score=165.77 Aligned_cols=223 Identities=11% Similarity=0.031 Sum_probs=163.0
Q ss_pred ccceecCCCCCCceeEEEEeeCCC--CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHN--GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~--~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
...+++|+....... .+ ..... .+.+++|+|||++++ ++..++.|.+||+.+..
T Consensus 20 ~~~v~~~d~~~~~~~-~~-~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--------------------- 76 (349)
T 1jmx_B 20 PNNLHVVDVASDTVY-KS-CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--------------------- 76 (349)
T ss_dssp TTEEEEEETTTTEEE-EE-EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---------------------
T ss_pred CCeEEEEECCCCcEE-EE-EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---------------------
Confidence 345667765443322 12 22233 688999999998665 45568999999987521
Q ss_pred CCCCCceeeEEee-cC-----ccCEEEEEEccCCCEEEEEeCC------------CeEEEEeccCCce---eEEeeCCCc
Q 006220 406 GPNGRKRSYTLYQ-GH-----SGPVYSASFSPLGDFILSSSAD------------TTIRLWSTKLNAN---LVCYKGHNY 464 (656)
Q Consensus 406 ~~~~~~~~~~~l~-~h-----~~~V~~l~~spd~~~L~s~s~D------------g~I~lwd~~~~~~---~~~~~~h~~ 464 (656)
....+. ++ ...+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+.. ..
T Consensus 77 -------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~ 148 (349)
T 1jmx_B 77 -------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PR 148 (349)
T ss_dssp -------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CS
T ss_pred -------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CC
Confidence 111111 11 2347789999999999988865 8999999987443 334443 34
Q ss_pred cEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC---------------------------------------
Q 006220 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL--------------------------------------- 505 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~--------------------------------------- 505 (656)
.+.+++|+|+|+ +++++. .|++||..+++.+..+..+.
T Consensus 149 ~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp SCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred cccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 688999999999 555543 49999998887776654321
Q ss_pred -----------------------------CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220 506 -----------------------------SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (656)
Q Consensus 506 -----------------------------~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (656)
..+.+++|+| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 302 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAF 302 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE
T ss_pred ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEE
Confidence 1345677889 99999988 889999999999988877643 45778999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC
Q 006220 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (656)
Q Consensus 556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h 588 (656)
+|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus 303 s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 303 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999999988888999999999999988877644
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1.6e-16 Score=181.62 Aligned_cols=242 Identities=13% Similarity=0.035 Sum_probs=174.0
Q ss_pred eeCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 348 INTHNGLNCASISQDGSLVAGG--FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g--~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
..|...+.+++|++++-+++.+ ..++...||.....+. ...+..|...+.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~l~~~~~~~~ 71 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA----------------------------EESALPAPWNVR 71 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC----------------------------EEESSCTTCCBC
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC----------------------------cceeCCCCcccc
Confidence 4566789999999887777777 5588899999642111 111222322222
Q ss_pred ---------EEEEc--cCCCE-EEEEeC-CCeEEEEecc--CCceeEEeeC-----CCccEEEEEEecCCCEEEEEECC-
Q 006220 426 ---------SASFS--PLGDF-ILSSSA-DTTIRLWSTK--LNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD- 484 (656)
Q Consensus 426 ---------~l~~s--pd~~~-L~s~s~-Dg~I~lwd~~--~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~sgs~D- 484 (656)
...|+ |||+. |+.++. +..|.+|++. +......+.. |...+.+++|+|+|+.|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 151 (662)
T 3azo_A 72 NRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEF 151 (662)
T ss_dssp CCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecc
Confidence 34454 99998 766554 5566667665 2034455555 66788999999999999999877
Q ss_pred ---------CcEEEEECCC------CceeEEec-CCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCC-CC--
Q 006220 485 ---------RTARIWSMDR------IQPLRIMA-GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVS-SG-- 537 (656)
Q Consensus 485 ---------g~i~lwd~~~------~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~-~~-- 537 (656)
..|++||+.+ +.. ..+. .+...+..++|+|+|++|+.++.+ ..|++||+. ++
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999988 444 4555 556778889999999999988755 379999999 57
Q ss_pred -eeEEEEecCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeeEeeeCCCcc--------EEEEEEcCCCCEEEE
Q 006220 538 -ECVRIFIGHRSMILSLAMSPDGRYMASGDEDG--TIMMWDLASGRCVTPLMGHTSC--------VWTLAYSCEGSLLAS 606 (656)
Q Consensus 538 -~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg--~I~iwD~~~~~~~~~~~~h~~~--------V~~l~~s~~~~~l~s 606 (656)
+......+|...+..+.|+|||+++++++.+| .|.+||+.+++.......+... +.+++|++++.++++
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 55555556678899999999999888888888 6777777666654433333222 567899999999999
Q ss_pred EECCCcEEEEeCC
Q 006220 607 GSADCTVKLWDVT 619 (656)
Q Consensus 607 gs~Dg~I~iWd~~ 619 (656)
++. +.++||.+.
T Consensus 311 ~~~-~~~~l~~~d 322 (662)
T 3azo_A 311 HGK-GAAVLGILD 322 (662)
T ss_dssp EBS-SSCEEEEEE
T ss_pred EEc-CccEEEEEE
Confidence 998 999999443
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=3.5e-16 Score=178.69 Aligned_cols=202 Identities=11% Similarity=0.071 Sum_probs=150.1
Q ss_pred CccCEEEEEEccCCCEEEEEeCC----------CeEEEEeccCC-----ceeEEee-CCCccEEEEEEecCCCEEEEEEC
Q 006220 420 HSGPVYSASFSPLGDFILSSSAD----------TTIRLWSTKLN-----ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~D----------g~I~lwd~~~~-----~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
|...+.+++|+|||+.|++++.+ .+|++||+.+. .....+. .+...+..++|||+|++|+.++.
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence 66788999999999999988877 58999999872 3344555 55667888999999999998885
Q ss_pred CC--------cEEEEECC-CC---ceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEecCCCC
Q 006220 484 DR--------TARIWSMD-RI---QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFIGHRSM 549 (656)
Q Consensus 484 Dg--------~i~lwd~~-~~---~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~~h~~~ 549 (656)
++ .|++||++ ++ .......++...+..++|+|+|+++++++.++ .|.+||+.+++.......+...
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence 53 79999998 56 44555555678899999999999888888888 6777777677765544433222
Q ss_pred --------eEEEEEcCCCCEEEEEECCCcEEEE--eCCCCeeeEeeeCCCccEEEE-EEcCCCCEEEEEECCCc--EEEE
Q 006220 550 --------ILSLAMSPDGRYMASGDEDGTIMMW--DLASGRCVTPLMGHTSCVWTL-AYSCEGSLLASGSADCT--VKLW 616 (656)
Q Consensus 550 --------i~~l~~sp~g~~L~s~~~dg~I~iw--D~~~~~~~~~~~~h~~~V~~l-~~s~~~~~l~sgs~Dg~--I~iW 616 (656)
+.+++|+|+++++++++. +.++|| |+.+++ +..+..|.+.+.++ +++.+.-++++++.+.. |.+|
T Consensus 288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 567899999999999998 999999 655555 67777787778877 55544434455565544 5555
Q ss_pred eCCCCCc
Q 006220 617 DVTTSTK 623 (656)
Q Consensus 617 d~~~~~~ 623 (656)
|+.+++.
T Consensus 366 d~~~g~~ 372 (662)
T 3azo_A 366 DTVTGRA 372 (662)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 6656553
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=7.8e-16 Score=177.60 Aligned_cols=240 Identities=10% Similarity=0.043 Sum_probs=178.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 353 GLNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.+.+++|||||++||.+..++ .|++||+.+.. ....... ...+.++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----------------------------~~~~~~~-~~~~~~~ 176 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----------------------------ELPDVLE-RVKFSCM 176 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----------------------------EEEEEEE-EECSCCE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----------------------------CCccccc-CcccceE
Confidence 588999999999999876643 89999987521 1111111 1236679
Q ss_pred EEccCCCEEEEEeCCCe----------------EEEEeccCCce--eEEeeC--CCccEEEEEEecCCCEEEEEEC----
Q 006220 428 SFSPLGDFILSSSADTT----------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSH---- 483 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~----------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~~~~l~sgs~---- 483 (656)
+|+|||+.|+.++.++. |++|++.++.. ...+.. |...+.++.|+|+|++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 99999999999888766 99999988763 233333 4556789999999999988775
Q ss_pred -CCcEEEEECCC------Cc-eeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCe--eEEEEecCCC-
Q 006220 484 -DRTARIWSMDR------IQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGE--CVRIFIGHRS- 548 (656)
Q Consensus 484 -Dg~i~lwd~~~------~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~--~~~~~~~h~~- 548 (656)
+..|++||+.+ +. ....+..+...+.. .|+|+|..|+..+.. +.|.+||+.++. ....+..|..
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 57899999976 43 45566666666655 488899888776653 369999998874 2344555544
Q ss_pred -CeEEEEEcCCCCEEEEEECCCc--EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCC
Q 006220 549 -MILSLAMSPDGRYMASGDEDGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-S---ADCTVKLWDVTTS 621 (656)
Q Consensus 549 -~i~~l~~sp~g~~L~s~~~dg~--I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s---~Dg~I~iWd~~~~ 621 (656)
.+..++|++++.++++...++. |.+||+.+|+.+..+..+.+.|.+++++|++..++.. + ..++|+.||+.++
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 6888999988888888888884 6667877788888888888889999999998766533 3 3478999999887
Q ss_pred C
Q 006220 622 T 622 (656)
Q Consensus 622 ~ 622 (656)
+
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 6
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=2e-15 Score=154.43 Aligned_cols=237 Identities=12% Similarity=0.051 Sum_probs=176.4
Q ss_pred EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+........+++|+|+|+ +++++..++.|..|+.... ...+..+...+.
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~~~~~~ 72 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------LSPEMHPSHHQN 72 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC------------------------------EEEEESSCSSEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC------------------------------eEEEECCCCCcc
Confidence 334556688999999998 7888888999999997641 233445667899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC----CccEEEEEEecCCCEEEEEEC-----------------C
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSH-----------------D 484 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs~-----------------D 484 (656)
+++++++|+++++...++.|.+||..+++........ ...+.+++++|+|+++++.+. .
T Consensus 73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 9999999998888777889999999777654333221 234678999999998887321 2
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCee---EEEEecCCCCeEEEEEcCCCC
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGEC---VRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~---~~~~~~h~~~i~~l~~sp~g~ 560 (656)
+.|..++.. + .+..+..+......++|+|+++.+++.+.++.|++||+. ++.. ...+..+...+..++++++|+
T Consensus 153 ~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 153 RWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp CEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred cEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 455555554 3 344455666778999999999999777778999999997 5554 344433455677899999998
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEE-cCCCCEEEEEECCCcEEEEeCCC
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
++++. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +.-++..+
T Consensus 231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 66666 7899999985 888888887777 899999 68999898888763 33344433
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=1.1e-15 Score=159.59 Aligned_cols=223 Identities=12% Similarity=0.080 Sum_probs=158.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---Cc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 352 NGLNCASISQDGSLVAGGFSD---SS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~d---g~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
..+.+++|||||++||.++.+ +. |.+|++.+ ..... +..+.. +.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~----------------------------g~~~~-l~~~~~-~~~ 108 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET----------------------------LSSKK-ILEAKN-IRS 108 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT----------------------------TEEEE-EEEESE-EEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC----------------------------CceEE-EEcCCC-ccc
Confidence 468899999999999987654 34 66666553 11112 222334 999
Q ss_pred EEEccCCCEEEEEeCC---------------------------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE
Q 006220 427 ASFSPLGDFILSSSAD---------------------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479 (656)
Q Consensus 427 l~~spd~~~L~s~s~D---------------------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 479 (656)
++|+|+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|+| +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 9999999988877642 5799999988876344444 3 78899999999 777
Q ss_pred EEECCC-------cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEEe
Q 006220 480 SSSHDR-------TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFI 544 (656)
Q Consensus 480 sgs~Dg-------~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~~ 544 (656)
+++.++ ...+|.+++++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++......
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred EEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 776542 34555444444 3344434 444444 8999999887754 3688888 666555555
Q ss_pred cCCCCeEE-EEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE-EEEeCC
Q 006220 545 GHRSMILS-LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV-KLWDVT 619 (656)
Q Consensus 545 ~h~~~i~~-l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I-~iWd~~ 619 (656)
++...+.. +.|+ +| ++++++.++.++|| +.+++. ..+..+.+.|.+++|++ .++++++.++.. .+|.+.
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 66677886 9999 88 88999999999999 876655 44445578899999999 688888877765 777776
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=2e-15 Score=159.64 Aligned_cols=201 Identities=9% Similarity=0.060 Sum_probs=146.6
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCceeEEee--CCCccEEEEEEecCCCE--EEEEE------------
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYK--GHNYPVWDVQFNPQGHY--FASSS------------ 482 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~--~h~~~V~~l~~sp~~~~--l~sgs------------ 482 (656)
+...+..++|+|++++|++++.+ .|.+|++. +++...... .+. .+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34467889999999999999888 99999997 666543322 112 3557899999994 44553
Q ss_pred -CCCcEEEEECC-CCceeEEec----CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCC-CCeeE--EEEe--cCCCCe
Q 006220 483 -HDRTARIWSMD-RIQPLRIMA----GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVS-SGECV--RIFI--GHRSMI 550 (656)
Q Consensus 483 -~Dg~i~lwd~~-~~~~~~~~~----~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~-~~~~~--~~~~--~h~~~i 550 (656)
.+|++.+|+++ .++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++.. ..+. .|...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 455443333 24567999999999999888764 6799999998 77653 2333 245678
Q ss_pred EEEEEcCCCCEEEEEEC-CCcEEEEeCC--CCeee---Eeee-------CCCc------cEEEEE-EcCCCCEEEEEECC
Q 006220 551 LSLAMSPDGRYMASGDE-DGTIMMWDLA--SGRCV---TPLM-------GHTS------CVWTLA-YSCEGSLLASGSAD 610 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~-dg~I~iwD~~--~~~~~---~~~~-------~h~~------~V~~l~-~s~~~~~l~sgs~D 610 (656)
..++|+|+|++|++++. ++.|.+|++. +++.. ..+. +|.. .+.+++ |+|||++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 6899999875 56542 1221 1222 588999 99999988776543
Q ss_pred -C-----cEEEEeCC-CCC
Q 006220 611 -C-----TVKLWDVT-TST 622 (656)
Q Consensus 611 -g-----~I~iWd~~-~~~ 622 (656)
+ +|.+|++. +++
T Consensus 276 ~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp SSTTSCCEEEEEEECTTSC
T ss_pred CCCCCCCeEEEEEECCCCC
Confidence 2 89999996 443
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=9.7e-17 Score=170.34 Aligned_cols=237 Identities=9% Similarity=-0.026 Sum_probs=164.4
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEEEE
Q 006220 354 LNCASISQDGSLVAGGFSD-S--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASF 429 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~d-g--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~ 429 (656)
+.+++|||||++|+.+... + .|.+|++.... . ..+..+... ...+.|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----------------------------~-~~l~~~~~~~~~~~~~ 88 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----------------------------A-VQLTEGKGDNTFGGFI 88 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----------------------------E-EECCCSSCBCTTTCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----------------------------E-EEeecCCCCccccceE
Confidence 6788999999998877553 3 57777765421 1 112222222 233789
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE-------------------EEEecCCCEEEEE-----ECCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-------------------VQFNPQGHYFASS-----SHDR 485 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~l~sg-----s~Dg 485 (656)
+|+|+.|+.++.++.|++|++.+++.......+...... +.|+|++..++.+ ..+.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999999999999999999999988766655544432222 3466777766544 3567
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECC------CcEEEEeCCCCeeEEEEecC-CCCeEEEEEcC
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSD------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSP 557 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp 557 (656)
.|++||+.+++..... .+...+..+.|+| ++..|+..+.+ ..|.+||+.++......... ...+..++|+|
T Consensus 169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 8999999987765555 4667789999999 78877776643 36889998766544333211 22578899999
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-CCCEEEEEE----------------CCCcEEE
Q 006220 558 DGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGS----------------ADCTVKL 615 (656)
Q Consensus 558 ~g~~L~s~~~d-----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs----------------~Dg~I~i 615 (656)
+|++|+.++.+ +.|.+||+.+++....... .+ .. +.|+| +|+++++++ .++.|++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 99987776544 4499999988865432222 12 23 88999 999888765 3478999
Q ss_pred EeCCCCCc
Q 006220 616 WDVTTSTK 623 (656)
Q Consensus 616 Wd~~~~~~ 623 (656)
||+.++..
T Consensus 325 ~d~~~~~~ 332 (396)
T 3c5m_A 325 LNTKAKSA 332 (396)
T ss_dssp EETTTTBC
T ss_pred EecccCce
Confidence 99987654
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=3.3e-16 Score=166.12 Aligned_cols=237 Identities=12% Similarity=0.028 Sum_probs=162.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE--Ec
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS--FS 430 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~s 430 (656)
.+.+++|||||+.|+.++.++.|++||+.+.. .......+.+.+.... ++
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~----------------------------~~~~~~~~~~~~~~~~~~~~ 133 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLE----------------------------ENVVYQVPAEWVGYGTWVAN 133 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCC----------------------------EEEEEECCTTEEEEEEEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------ceeeeechhhcccccceeEC
Confidence 34477899999999999999999999987521 1222333444443333 48
Q ss_pred cCCCEEEEE----------------------eCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECC---
Q 006220 431 PLGDFILSS----------------------SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD--- 484 (656)
Q Consensus 431 pd~~~L~s~----------------------s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~D--- 484 (656)
|+++.++.. +.++.|.+||+.+++... +..+...+..+.|+| +|..++.++.+
T Consensus 134 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (388)
T 3pe7_A 134 SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHD 212 (388)
T ss_dssp TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCC
Confidence 899887742 244789999999886544 344666789999999 99999887753
Q ss_pred ---CcEEEEECCCCceeEEecCCC--CCeeEEEEcCCCCEEEEEEC-CC----cEEEEeCCCCeeEEE--EecCCCC---
Q 006220 485 ---RTARIWSMDRIQPLRIMAGHL--SDVDCVRWHINCNYIATGSS-DK----TVRLWDVSSGECVRI--FIGHRSM--- 549 (656)
Q Consensus 485 ---g~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~p~~~~l~tgs~-dg----~V~iwd~~~~~~~~~--~~~h~~~--- 549 (656)
..|.++|....... .+..+. ..+...+|+|+|+.|+..+. ++ .|++||+.+++.... +.++...
T Consensus 213 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 213 LVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp TSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred CCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence 37888888765443 343343 25778899999998765443 22 399999999875433 2221000
Q ss_pred eEEEEEcCCCCEEEEE---------ECCCcEEEEeCCCCeeeEeeeCCCc-----------cEEEEEEcCCCCEEEEEE-
Q 006220 550 ILSLAMSPDGRYMASG---------DEDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGS- 608 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~---------~~dg~I~iwD~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~sgs- 608 (656)
...+.|+|||+.|+.. ..+..|.+||+.+++. ..+..|.. .+.+++|+|||+.|+.++
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 1123799999988754 4566899999988765 44555554 578899999999887766
Q ss_pred CCCcEEEEeCCC
Q 006220 609 ADCTVKLWDVTT 620 (656)
Q Consensus 609 ~Dg~I~iWd~~~ 620 (656)
.+|...||.+.-
T Consensus 371 ~~g~~~l~~~~l 382 (388)
T 3pe7_A 371 VHGKPALYLATL 382 (388)
T ss_dssp TTSSCEEEEEEC
T ss_pred CCCceeEEEEEC
Confidence 567777776644
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=2.4e-15 Score=151.07 Aligned_cols=240 Identities=9% Similarity=0.020 Sum_probs=174.8
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
...+++++++|++++ +.+.++.|.+|+...... ......+...+.++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~----------------------------~~~~~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT----------------------------TVLPFNGLYQPQGLAVDG 76 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------------------EECCCCSCCSCCCEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc----------------------------ceEeeCCcCCcceeEECC
Confidence 678999999999777 546788999998653110 000112334567899999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
+++++++.. ++.|.+||...... ..+. .....+.+++++++|..+++...++.|.+|+..+.............+.+
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG 154 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence 998666665 88999999875543 3332 23356889999999998777777899999987655443333334456889
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCc
Q 006220 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS 590 (656)
Q Consensus 511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~ 590 (656)
++++++++.+++...++.|.+||...+........+...+.+++++++|.++++...++.|.+||............+..
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence 99999999777777788999999887665543333446789999999998777777788999999865543332223335
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 591 ~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
.+.+++++++|+++++...++.|+++++...+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 78999999999988998999999999987654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=3.7e-15 Score=155.59 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=156.8
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 353 GLNCASISQDGSLVAGGF---------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~---------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.+...++ ||+.+|... .++.|.+|++.+. . ...+ ..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~----------------------------~-~~~l----~~ 60 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN----------------------------A-RRFI----EN 60 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC----------------------------C-EEEE----ES
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC----------------------------c-eEEc----cc
Confidence 4666777 888887652 2567888887641 1 1112 56
Q ss_pred EEEEEEccCCCEEEEEeCC---C--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC--------------
Q 006220 424 VYSASFSPLGDFILSSSAD---T--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-------------- 484 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~D---g--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-------------- 484 (656)
+.+++|||||++|+.++.+ + .|.+|++.+++.......+ . +..++|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 8889999999999877654 3 4788888877665544433 3 9999999999999888742
Q ss_pred -------------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCeeEEEEe
Q 006220 485 -------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI 544 (656)
Q Consensus 485 -------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-------~V~iwd~~~~~~~~~~~ 544 (656)
..|++||+.+++.+..+.. . .+..++|+|+| ++++++.++ ...+|.+.+++... +.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~ 214 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MF 214 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-ec
Confidence 5799999988876444544 3 78899999999 777776542 33444444555443 44
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeeEeeeCCCccEEE-EEEcCCCCEEEEEECCCcEEE
Q 006220 545 GHRSMILSLAMSPDGRYMASGDED--------GTIMMWDLASGRCVTPLMGHTSCVWT-LAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~~d--------g~I~iwD~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~sgs~Dg~I~i 615 (656)
.+ ..+..+ +|+|++|+.++.+ ..|.+|| +++.......|...+.. +.|+ ++ ++++++.++.+++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 44 555554 9999998887754 3688888 56554444566778886 9999 88 9999999999999
Q ss_pred EeCCCC
Q 006220 616 WDVTTS 621 (656)
Q Consensus 616 Wd~~~~ 621 (656)
| +.++
T Consensus 288 ~-~~~g 292 (347)
T 2gop_A 288 Y-IWDG 292 (347)
T ss_dssp E-EESS
T ss_pred E-EcCC
Confidence 9 8743
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=6e-15 Score=155.89 Aligned_cols=263 Identities=14% Similarity=0.081 Sum_probs=178.7
Q ss_pred cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCCcccccccCCCCCCCC
Q 006220 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTT 399 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~ 399 (656)
..+++++....... .++..... - .++|||||+++.++.. ++.|.+||..+......
T Consensus 31 ~~v~v~D~~t~~~~-~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~----------- 96 (361)
T 2oiz_A 31 SRVHVYDYTNGKFL-GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE----------- 96 (361)
T ss_dssp CEEEEEETTTCCEE-EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE-----------
T ss_pred CeEEEEECCCCeEE-EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE-----------
Confidence 45666654333222 23322222 3 8999999999998863 56799999864221111
Q ss_pred CCccccCCCCCceeeEEee---cCccCEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEE-eeCCCccEEEEEEec
Q 006220 400 PREDIIGPNGRKRSYTLYQ---GHSGPVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNP 473 (656)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp 473 (656)
+.... .+......++|+|+|++|+++.. +++|.+||+.+++.+.. +... ..+.+.+.|
T Consensus 97 --------------i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p 160 (361)
T 2oiz_A 97 --------------ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP 160 (361)
T ss_dssp --------------EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred --------------EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence 00000 02234567899999999998864 58999999999987776 5432 234466778
Q ss_pred CC-CEEEEEECCCcEEEEECCC-CceeEE------ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--EEEE
Q 006220 474 QG-HYFASSSHDRTARIWSMDR-IQPLRI------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIF 543 (656)
Q Consensus 474 ~~-~~l~sgs~Dg~i~lwd~~~-~~~~~~------~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~ 543 (656)
++ ..+++.+.||.+.+|+.+. ++.... +..+..++ .+.+++++..++..+.++.|.++|+..+.. ...+
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence 65 6788889999999999865 443311 12222222 233457777888888899999999875532 2222
Q ss_pred ec------CC----CCeEEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220 544 IG------HR----SMILSLAMSPDGRYMASGDE-----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (656)
Q Consensus 544 ~~------h~----~~i~~l~~sp~g~~L~s~~~-----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~ 602 (656)
.. +. .....++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +++++|+|+|+
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~ 317 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN 317 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC
Confidence 11 00 11123789999888777643 3489999999999999998877 89999999999
Q ss_pred EEEEEECCCcEEEEeCCCC--Cceee
Q 006220 603 LLASGSADCTVKLWDVTTS--TKVLK 626 (656)
Q Consensus 603 ~l~sgs~Dg~I~iWd~~~~--~~~~~ 626 (656)
+|++++. ++|.+||..++ +.+..
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp EEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred EEEEeCC-CeEEEEECCCCcceeeEE
Confidence 9998886 99999999998 65543
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=7e-14 Score=145.16 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=170.9
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
....+..+...+.+++|+++|++++++..++.|.+|+..... .......+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~ 87 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----------------------------IKRPFVSHKA 87 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----------------------------EEEEEECSSS
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----------------------------EEEEeeCCCC
Confidence 344556666778999999999988888889999999876411 1111224567
Q ss_pred CEEEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEEC------CCcEEEE
Q 006220 423 PVYSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSH------DRTARIW 490 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~------Dg~i~lw 490 (656)
.+.+++|+|++++++++..+ +.|.+||..++.....+. .+...+.+++++|+|.++++... .+.|..|
T Consensus 88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 89999999999988877766 689999998776543332 24457899999999987776653 2456666
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC-CeeEEE-----E---ecCCCCeEEEEEcCCCC
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS-GECVRI-----F---IGHRSMILSLAMSPDGR 560 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~-~~~~~~-----~---~~h~~~i~~l~~sp~g~ 560 (656)
+.++++.... ..+...+..++|+|++++++.+ +.++.|.+||+.+ +..+.. + .++ ..+..++++++|+
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~ 245 (333)
T 2dg1_A 168 SPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN 245 (333)
T ss_dssp CTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred eCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence 6655444333 2334567899999999866554 4578999999964 333221 1 122 3678899999999
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEECCC
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~Dg 611 (656)
++++...++.|.+||. .++.+..+..+.. .+.+++|++++..|+.++.++
T Consensus 246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8888888899999998 5777777655443 689999999987776665553
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=1.4e-15 Score=161.40 Aligned_cols=245 Identities=11% Similarity=0.011 Sum_probs=159.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-----EEEEEE
Q 006220 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-----VYSASF 429 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~l~~ 429 (656)
.++.|||||++|+.++.++.|.+|++.+............ . .+. +. ......... ...+.|
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~-------~~~--g~--~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---W-------KGY--GT--WVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---E-------EEE--EE--EEECTTSSEEEEEEEEGGGC
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc---c-------CCC--CC--EEEeccCCcccccccccccc
Confidence 3478999999999999999999999875332111110000 0 000 00 000000000 011457
Q ss_pred ccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECC------CcEEEEECCCCce
Q 006220 430 SPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHD------RTARIWSMDRIQP 497 (656)
Q Consensus 430 spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~D------g~i~lwd~~~~~~ 497 (656)
+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||++....
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 8888877654 45678999999987765444 4667789999999 78877776643 3688889876554
Q ss_pred eEEecCC-CCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEE----
Q 006220 498 LRIMAGH-LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGD---- 566 (656)
Q Consensus 498 ~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~---- 566 (656)
....... ...+..++|+|+|++|+.++.+ +.|++||+.+++....... .. .. +.|+| +|+++++++
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 229 RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC-
T ss_pred eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcc
Confidence 3333311 2357889999999988777544 4499999998876554322 22 33 89999 999888765
Q ss_pred ------------CCCcEEEEeCCCCeeeEeeeCCCc-----------cEEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 006220 567 ------------EDGTIMMWDLASGRCVTPLMGHTS-----------CVWTLAYSCEGSLLASGSA-DCTVKLWDV 618 (656)
Q Consensus 567 ------------~dg~I~iwD~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~ 618 (656)
.++.|.+||+.+++. ..+..+.. .+.+++|+|+|+.|+.++. ++...+|.+
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 347899999988764 34444443 2567899999998887765 455555544
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=1.2e-14 Score=150.89 Aligned_cols=235 Identities=12% Similarity=0.078 Sum_probs=175.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|.+++|++++..++..+.++.++.|.- .....+..+...+.+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-------------------------------EPWLEISKKGLQLEGLNFDR 54 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-------------------------------EEEEEEESSCCCEEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCccccc-------------------------------ceeEEEeccCccccCcEECC
Confidence 45778889998887777778888888831 23444556667789999999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEec--CCC
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMA--GHL 505 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~--~~~ 505 (656)
++++++++..++.|.+||..+++.......+...+.+++|+|+|++++++..+ +.|.+||.++......+. .+.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 99988888889999999998877655444566789999999999988877666 689999998876554443 244
Q ss_pred CCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCC
Q 006220 506 SDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLAS 578 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~ 578 (656)
..+.+++++|+|+.+++... .+.|..||..+++..... .+...+..++|+|+|+.|+.+ +.++.|.+||+.+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 57899999999987776653 356777776655544332 333457899999999866554 4578999999964
Q ss_pred -CeeeEe--------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 579 -GRCVTP--------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 579 -~~~~~~--------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
+..+.. +.++ ..+..++++++|+++++...++.|.+||..
T Consensus 214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 333221 1122 467889999999988888888999999984
No 183
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=2.1e-15 Score=174.90 Aligned_cols=197 Identities=12% Similarity=0.196 Sum_probs=152.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc-----EEEEEEecCCCEEEEEECC---------CcE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-----VWDVQFNPQGHYFASSSHD---------RTA 487 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~sgs~D---------g~i 487 (656)
....++.|+|++++++++ ||+|++||+.++++...+.+|... ..++.|||||++++.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 899999999999988888877643 2347899999999999876 566
Q ss_pred EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCe----------------
Q 006220 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMI---------------- 550 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i---------------- 550 (656)
.+||+.+++... +..|...+...+|||+|+.||.++ ++.|++||+.++...+.. .++...+
T Consensus 95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 799999987553 556778899999999999999884 789999999988765532 2222222
Q ss_pred -EEEEEcCCCCEEEEEECCC------------------------------------cEEEEeCCC---Ce--eeEeee--
Q 006220 551 -LSLAMSPDGRYMASGDEDG------------------------------------TIMMWDLAS---GR--CVTPLM-- 586 (656)
Q Consensus 551 -~~l~~sp~g~~L~s~~~dg------------------------------------~I~iwD~~~---~~--~~~~~~-- 586 (656)
..+.|||||+.|+.++.|. .|.+||+.+ +. ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999999875322 488899988 73 223333
Q ss_pred ----CCCccEEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCC
Q 006220 587 ----GHTSCVWTLAYSCEGSLLASGSA----DCTVKLWDVTTST 622 (656)
Q Consensus 587 ----~h~~~V~~l~~s~~~~~l~sgs~----Dg~I~iWd~~~~~ 622 (656)
+|...+..++|+|||+.++.... +..|++||+.+++
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 37788999999999997766543 3479999999876
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=2.5e-15 Score=172.89 Aligned_cols=240 Identities=14% Similarity=0.027 Sum_probs=168.4
Q ss_pred CCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 352 NGLNCASISQDGSLVAGG-----FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g-----~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
..+.+++|||||++||.+ +.+..|++||+.+..... ...+.+. ...+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--------------------------~~~~~~~--~~~~ 172 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--------------------------VDVIEGG--KYAT 172 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--------------------------SCCBSCC--TTCC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--------------------------CcccCcc--cccc
Confidence 358999999999999944 345689999998632110 0000011 1156
Q ss_pred EEEccCCCEEEEEeCCCe-------------EEEEeccCCce--eEEee--CCCccEEEEEEecCCCEEEEEECCC----
Q 006220 427 ASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYK--GHNYPVWDVQFNPQGHYFASSSHDR---- 485 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg---- 485 (656)
++|+|||+.|+.++.|.. |++|++.++.. ...+. .|...+.++.|+|+|++++.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 899999999999988776 99999988763 23333 3556788999999999998888666
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCee---EEEEecC-CCCeEEEEEcC
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGEC---VRIFIGH-RSMILSLAMSP 557 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~~---~~~~~~h-~~~i~~l~~sp 557 (656)
.|++|+..++.. ..+..+...+....| ++|. ++..+. ++.|.+||+.++.. ...+..+ ...+..++|+
T Consensus 253 ~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 253 DVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred EEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence 677776655543 444445556666666 5666 554443 57899999987753 3333333 4467888888
Q ss_pred CCCEEEEEECCCcEEEEeCC-CCeeeEeeeCC-CccEEEEEEcCCCCEEEEEE----CCCcEEEEeCCCCCc
Q 006220 558 DGRYMASGDEDGTIMMWDLA-SGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS----ADCTVKLWDVTTSTK 623 (656)
Q Consensus 558 ~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs----~Dg~I~iWd~~~~~~ 623 (656)
++.++++...|+..+||.+. .++....+..+ .+.|..++++|++..++... ..++|++||+.+++.
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 67888889999988888664 46666666655 57788899999987766332 347899999988764
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=5.2e-14 Score=146.54 Aligned_cols=205 Identities=15% Similarity=0.205 Sum_probs=161.0
Q ss_pred ccCEEEEEEccCCCEEEEEeCC------------------------CeEEEEeccCCceeEEee-CCCccEEEEEEecCC
Q 006220 421 SGPVYSASFSPLGDFILSSSAD------------------------TTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQG 475 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~D------------------------g~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~ 475 (656)
-+.|.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++.....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999999888877 479999998888766554 344578899999999
Q ss_pred CEEEEEECCCcEEEEECCCCc-eeEEe---------cCCCCCeeEEEEcC-CCCEEEEEE-CCCcEEEEeCCCCeeEEEE
Q 006220 476 HYFASSSHDRTARIWSMDRIQ-PLRIM---------AGHLSDVDCVRWHI-NCNYIATGS-SDKTVRLWDVSSGECVRIF 543 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~~~~-~~~~~---------~~~~~~V~~v~~~p-~~~~l~tgs-~dg~V~iwd~~~~~~~~~~ 543 (656)
+++++.+.++.|++||.+... .+..+ .++......++++| +++.+++.+ .++.|++|| .++..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 34555789999999 788888876 689999999 677777776
Q ss_pred ecCC----------CCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEE---
Q 006220 544 IGHR----------SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG--- 607 (656)
Q Consensus 544 ~~h~----------~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sg--- 607 (656)
.... .....|+++|+ |.++++...++.|++||..+|+.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 4322 34889999998 7777777788999999998899888874 4557789999999 4333333
Q ss_pred ----ECCCcEEEEeCCCCCceeec
Q 006220 608 ----SADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 608 ----s~Dg~I~iWd~~~~~~~~~~ 627 (656)
..++.|++|++.+++.....
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEE
Confidence 34458999999888766543
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=8.1e-14 Score=141.41 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=179.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCEEEEEEccCCCEEEEEe
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~~L~s~s 440 (656)
.+++|++++.++.|.+||..+ ++....+..+. ..+.++.++|+|++++ +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t----------------------------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT----------------------------KEIVWEYPLEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT----------------------------TEEEEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred CCcEEEeeCCCCEEEEEECCC----------------------------CeEEEEeCCCccCCCcCeEECCCCCEEE--e
Confidence 467899999999999999754 23344444444 4678899999999888 3
Q ss_pred CCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec------CCCCCeeEEE
Q 006220 441 ADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA------GHLSDVDCVR 512 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~~~~------~~~~~V~~v~ 512 (656)
.++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+. .+......++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 4778999999 78888888865 357889999999999999887 788888886 566665554 1223455678
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT--- 589 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~--- 589 (656)
+.++|+++++.+.++.|..||.. |+.+..+... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++..+.
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~ 209 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG 209 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence 89999999999999999999987 9999988765 345667889999999999888899999999999998886432
Q ss_pred ---ccEEEEEEcCCCCEEEEEECC--------CcEEEEeC-CCCCceeeccc
Q 006220 590 ---SCVWTLAYSCEGSLLASGSAD--------CTVKLWDV-TTSTKVLKTEE 629 (656)
Q Consensus 590 ---~~V~~l~~s~~~~~l~sgs~D--------g~I~iWd~-~~~~~~~~~~~ 629 (656)
..+.++...++|.++++.... +..+++.+ ..++.+.....
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 237888999999988887421 23456666 34444444433
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.62 E-value=1e-12 Score=133.35 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=177.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+......+.+++++++|++.++...++.|.+|+... .. .......+...+.
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~---------------------------~~~~~~~~~~~~~ 60 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI---------------------------TEYPLPTPDAKVM 60 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE---------------------------EEEECSSTTCCEE
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce---------------------------EEecCCcccCcee
Confidence 3344456799999999999888776688999998651 10 0011112346788
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ec
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MA 502 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~ 502 (656)
++++++++.++++...++.|..|+.. +. ...+. .....+.++++.++|.++++...++.|..||. +++.... ..
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence 99999999988887778899999986 33 22232 34557889999999988887777889999998 4443332 23
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.+...+.++++.++++.+++...++.|..||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++.
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 34567899999999987777767789999998 6665543 2334456889999999997777667889999998 6654
Q ss_pred eEe-eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 582 VTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 582 ~~~-~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
... ...+...+.+++++++|.++++...++.|.+||..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 332 23345678999999999977776678899999983
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=5.5e-13 Score=136.80 Aligned_cols=245 Identities=9% Similarity=0.067 Sum_probs=171.5
Q ss_pred eeCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 348 INTHNGLNCASISQDGSLVAG-------GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~-------g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
...-....+++|++++.++++ ++.++.|.+|+......... ......++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------~~~~~~~~ 69 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------------------------CKPEVNGY 69 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE------------------------ECCEETTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE------------------------EecccCCC
Confidence 344456789999999998888 57788999998654211000 00001124
Q ss_pred ccCEEEEEEccC-CCEEEEEeCCCeEEEEeccCCceeEE-eeC----CCccEEEEEEecCCCEEEEEECC----------
Q 006220 421 SGPVYSASFSPL-GDFILSSSADTTIRLWSTKLNANLVC-YKG----HNYPVWDVQFNPQGHYFASSSHD---------- 484 (656)
Q Consensus 421 ~~~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~----h~~~V~~l~~sp~~~~l~sgs~D---------- 484 (656)
...+.+++++++ ++++++.. .+.|.+||.. ++.... ... ....+.+++++++|+++++...+
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 567899999999 66555444 4479999988 654332 221 12357899999999887777655
Q ss_pred -----CcEEEEECCCCceeEEecCCCCCeeEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCee-----EEEEecCC-
Q 006220 485 -----RTARIWSMDRIQPLRIMAGHLSDVDCVRWH----INCNYIATG-SSDKTVRLWDVS-SGEC-----VRIFIGHR- 547 (656)
Q Consensus 485 -----g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~----p~~~~l~tg-s~dg~V~iwd~~-~~~~-----~~~~~~h~- 547 (656)
+.|..|+.+ ++.... ..+......++|+ |+++.++++ +.++.|.+||.. ++.. ...+.++.
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred ccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 567777765 443333 3344557889999 999776655 467899999986 4542 22233333
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE-EEEECCCcEEEEeCCC
Q 006220 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL-ASGSADCTVKLWDVTT 620 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iWd~~~ 620 (656)
..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 567889999999988888888999999998788777777777789999999999955 5555678999999865
No 189
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.59 E-value=6.6e-13 Score=134.68 Aligned_cols=197 Identities=12% Similarity=0.180 Sum_probs=154.0
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee------CCCccEEEEEEe-cCCCEEEEEEC-CCcEEEE
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK------GHNYPVWDVQFN-PQGHYFASSSH-DRTARIW 490 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~------~h~~~V~~l~~s-p~~~~l~sgs~-Dg~i~lw 490 (656)
++-..+.+++++++++++++.+.++.|.+||.. +..+..+. ++...+.++++. +++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 55555553 234568899995 66766665543 8999999
Q ss_pred ECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220 491 SMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 491 d~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
| .+++.+..+. .+...+.+++++|+++.+++...++.|.+||. .++.+..+. ++...+..++++|+|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 4566666654 34467899999999998888778899999995 466666664 34457899999999998888778
Q ss_pred CCcEEEEeCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCC-cEEEEeCC
Q 006220 568 DGTIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADC-TVKLWDVT 619 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg-~I~iWd~~ 619 (656)
++.|.+||. .++.+..+..+ ...+.+++++++|+++++...++ .|.+||..
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 899999997 56666666543 35789999999999998888886 99999954
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=4.5e-12 Score=128.55 Aligned_cols=255 Identities=6% Similarity=-0.044 Sum_probs=177.3
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (656)
.+..++.. .....+........+.+++++++|.+.++...++.|..|+... ..
T Consensus 37 ~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~------------------------ 89 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG--II------------------------ 89 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CE------------------------
T ss_pred cEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cE------------------------
Confidence 44444444 3333333223456799999999999888877788899998642 00
Q ss_pred ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (656)
Q Consensus 411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l 489 (656)
.......+...+.++++.+++.++++...++.|..||. ++.... ....+...+.++++.++|..+++...++.|..
T Consensus 90 --~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 90 --KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp --EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred --EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 00111123456889999999988888777889999998 454432 22334556899999999988777767789999
Q ss_pred EECCCCceeEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 490 WSMDRIQPLRI-MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 490 wd~~~~~~~~~-~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
||. +++.... ...+...+.+++++++++..++...++.|.+||. ++..... ...+...+.+++++++|++.++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 998 5554433 3344566889999999987776666889999999 6664432 2234467899999999997666657
Q ss_pred CCcEEEEeCCCCeeeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 568 DGTIMMWDLASGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
++.|..||. ++.. ..+ ..+...+.++++ +++.++++.+ .+.|..++..+.
T Consensus 245 ~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 789999998 4543 333 344567899999 8888777655 567777776553
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.2e-13 Score=155.71 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=151.6
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCC-----eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc-------
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADT-----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT------- 486 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg-----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~------- 486 (656)
+|...+.+++|||||++|+.++.++ +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555788999999999988766543 8999999988776533222 23678999999999999988766
Q ss_pred ---------EEEEECCCCce--eEEecC--CCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCCC------Ce-eEE
Q 006220 487 ---------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVSS------GE-CVR 541 (656)
Q Consensus 487 ---------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~~------~~-~~~ 541 (656)
|++|++.++.. ...+.. |...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988763 233333 4455789999999999988765 56899999986 53 456
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCCe--eeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCc-
Q 006220 542 IFIGHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGR--CVTPLMGHTS--CVWTLAYSCEGSLLASGSADCT- 612 (656)
Q Consensus 542 ~~~~h~~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~~--~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~- 612 (656)
.+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+.+++|++++.+++++..|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 66667666654 588999988776653 369999998764 2345555543 6888999988888888888885
Q ss_pred -EEEEeCCCCCce
Q 006220 613 -VKLWDVTTSTKV 624 (656)
Q Consensus 613 -I~iWd~~~~~~~ 624 (656)
|.+|++.+++..
T Consensus 360 ~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 360 TLQLHDLATGALL 372 (710)
T ss_dssp EEEEEETTTCCEE
T ss_pred EEEEEECCCCCEE
Confidence 566777566543
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=1.3e-13 Score=159.88 Aligned_cols=239 Identities=15% Similarity=0.061 Sum_probs=167.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 353 GLNCASISQDGSLVAGGFSD-----SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~d-----g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.+.+++|||||++||.++.+ ..|++||+.+... .. ...+...+.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~----------------------------~~-~~~~~~~~~~~ 214 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP----------------------------LA-DELKWVKFSGL 214 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE----------------------------EE-EEEEEEESCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC----------------------------CC-ccCCCceeccE
Confidence 58899999999999987654 3599999875211 11 11111223578
Q ss_pred EEccCCCEEEEEeCCCe--------------EEEEeccCCce--eEEeeC--CCccEEEEEEecCCCEEEEEECCC----
Q 006220 428 SFSPLGDFILSSSADTT--------------IRLWSTKLNAN--LVCYKG--HNYPVWDVQFNPQGHYFASSSHDR---- 485 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~--------------I~lwd~~~~~~--~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg---- 485 (656)
+|+|| +.|+.++.++. |++|++.++.. ...+.. +...+.++.|+|+|++++..+.++
T Consensus 215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV 293 (741)
T ss_dssp EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence 99999 98888877654 88999877653 233333 333588999999999988887544
Q ss_pred -cEEEEECCCC--ceeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCC--eeEEEEecCCCCeEEEEEc
Q 006220 486 -TARIWSMDRI--QPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSG--ECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 486 -~i~lwd~~~~--~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~--~~~~~~~~h~~~i~~l~~s 556 (656)
.|++||+.++ .+...+..+...+.... +|+|..|+..+.+ +.|.+||+.++ .....+..+...+..+.++
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 8999999876 41445555555555543 4889988887764 45999999874 3444454555556678887
Q ss_pred CCCCEEEEEECCCcEEEEeCC-CCeeeEeeeC-CCccEEEEEEcCCCCEEE-EEE---CCCcEEEEeCCCCCc
Q 006220 557 PDGRYMASGDEDGTIMMWDLA-SGRCVTPLMG-HTSCVWTLAYSCEGSLLA-SGS---ADCTVKLWDVTTSTK 623 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~-h~~~V~~l~~s~~~~~l~-sgs---~Dg~I~iWd~~~~~~ 623 (656)
++.++++...|+..+||.+. .+.....+.. +.+.|..++++|+++.|+ +.+ ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 56788888889987777554 4666666654 357789999999987555 332 347899999987653
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=8.6e-13 Score=137.29 Aligned_cols=239 Identities=8% Similarity=-0.067 Sum_probs=171.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
...+++. ++++.++...++.|.+||..+.. ....+. .......+++++++
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----------------------------~~~~i~-~~~~p~~i~~~~~g 95 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----------------------------EVGRIT-GFTSPRYIHFLSDE 95 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCC----------------------------EEEEEE-CCSSEEEEEEEETT
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccE----------------------------EEEEcC-CCCCCcEEEEeCCC
Confidence 4556664 35555666668999999987522 222222 33567899999988
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCC-----ccEEEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecCCCC
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHN-----YPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
+.+++...++.|.+||..+++....+.... .....+++ . +..+++++ .+++|.+||+.+.+.+..+... .
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~ 172 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-I 172 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-S
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-C
Confidence 554555488999999999988776665433 13456777 3 44555554 4899999999998888777643 3
Q ss_pred CeeEEEEcCCCCEEEEEECC----------CcEEEEeCCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 507 DVDCVRWHINCNYIATGSSD----------KTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~d----------g~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
....++++|+|++++++..+ +.|.+||..+++....+... ......++|+|+++.|+++.. .|.+||
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 46788999999877766554 78999999999888776533 236889999999999988755 899999
Q ss_pred CCCCeeeEe--eeCCCccEEEEEEcC-CCCEEEEE----ECCCcEEEEeCCCCCceeecc
Q 006220 576 LASGRCVTP--LMGHTSCVWTLAYSC-EGSLLASG----SADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 576 ~~~~~~~~~--~~~h~~~V~~l~~s~-~~~~l~sg----s~Dg~I~iWd~~~~~~~~~~~ 628 (656)
..+++.... +..+.....+++++| ++.++++. ..++.|.+||.. ++.+....
T Consensus 251 ~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 251 VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 988876421 112245789999999 56666666 578999999998 76665543
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=4.9e-13 Score=136.53 Aligned_cols=205 Identities=16% Similarity=0.061 Sum_probs=154.1
Q ss_pred eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd 491 (656)
....+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++|.++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 3344556667788999999998 7788888999999999877 666667777899999999999887777778999999
Q ss_pred CCCCceeEEecCC----CCCeeEEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCeeEEEEecCCCCe
Q 006220 492 MDRIQPLRIMAGH----LSDVDCVRWHINCNYIATG----S-------------SDKTVRLWDVSSGECVRIFIGHRSMI 550 (656)
Q Consensus 492 ~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tg----s-------------~dg~V~iwd~~~~~~~~~~~~h~~~i 550 (656)
..+++........ ...+..++++|+|+++++. + ..+.|..++.. ++ +..+..+....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~ 174 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP 174 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence 9777655443321 2356789999999988873 3 13456666655 44 44455666778
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCC-CCee---eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 551 LSLAMSPDGRYMASGDEDGTIMMWDLA-SGRC---VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~---~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
..++|+|+|+.+++.+.++.|.+||+. ++.. ...+..+.+.+.+++++++|+++++. ++.|.+||.. ++..
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 999999999988777778999999986 4544 22333345567789999999977766 8899999986 4433
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=6.3e-13 Score=152.87 Aligned_cols=195 Identities=8% Similarity=-0.018 Sum_probs=142.8
Q ss_pred cCccCEEEEEEccCCCEEE-----EEeCCCeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECCCc-----
Q 006220 419 GHSGPVYSASFSPLGDFIL-----SSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRT----- 486 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~-----s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~Dg~----- 486 (656)
+|...+.+++|||||++|+ +|+.+.+|++||+.+++.+. ..+...+ ..++|+|+|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666799999999999988 44455789999999887641 1121222 68999999999999998876
Q ss_pred --------EEEEECCCCce--eEEec--CCCCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCeeEEEEecCCCCe
Q 006220 487 --------ARIWSMDRIQP--LRIMA--GHLSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGECVRIFIGHRSMI 550 (656)
Q Consensus 487 --------i~lwd~~~~~~--~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~~~~~~~h~~~i 550 (656)
|++|++.++.. ...+. .+...+.++.|+|+|++|+.++.++ .|++||..++... .+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce
Confidence 99999988763 23333 3556788999999999998887666 7888876666544 444555556
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEeCCCCee--eEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 551 LSLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~--~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
....+ ++|+ ++..+. ++.|.+||+.++.. ...+..| ...+.+++|+ ++.+++++..|+..++|.+.
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 66666 6666 554443 58899999987653 2333333 4568889998 77788999999998888765
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=6.4e-12 Score=134.88 Aligned_cols=233 Identities=10% Similarity=0.121 Sum_probs=166.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
....++|+++++++++...++.|++||.... ........ ..... ++|+++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g----------------------------~~~~~~~~-~~~~~-ia~~~~ 181 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN----------------------------KVTTVHPG-FKGGK-PAVTKD 181 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTT----------------------------EEEEEEET-CCBCB-CEECTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCC----------------------------EEEEeecc-CCCCc-eeEecC
Confidence 5789999999998888888899999998641 11111222 22223 899999
Q ss_pred CCEEEEEeCCC--eEEEEeccCCceeEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE----ec
Q 006220 433 GDFILSSSADT--TIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI----MA 502 (656)
Q Consensus 433 ~~~L~s~s~Dg--~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~----~~ 502 (656)
++.|+++..++ .|.+|+...+.....+ ......+++++++|++..|+++..++.|+.||..+...... ..
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 99998888766 7999988766554333 21445678999999555566677789999999987653332 22
Q ss_pred CCCCCe--eEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCC---------------CCeEEEEEcCCCCEEEE
Q 006220 503 GHLSDV--DCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHR---------------SMILSLAMSPDGRYMAS 564 (656)
Q Consensus 503 ~~~~~V--~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~---------------~~i~~l~~sp~g~~L~s 564 (656)
++...- ..++|+|+ +..+++...++.|+.|+.... +..+.++. .....++++|+|+++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 222222 39999995 555555566789999997643 33444442 34789999999997777
Q ss_pred EE-CCCcEEEEeCCCCeeeEeeeCC---------------CccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 565 GD-EDGTIMMWDLASGRCVTPLMGH---------------TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 565 ~~-~dg~I~iwD~~~~~~~~~~~~h---------------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
-. .++.|+.||+.++.. ..+.++ -.....+++++++.++++-..++.|+.+++
T Consensus 340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77 789999999877764 344333 135889999999888888888889988775
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=6.6e-11 Score=119.94 Aligned_cols=239 Identities=9% Similarity=0.002 Sum_probs=174.4
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
.....+.+++++++|++.++...++.|.+|+... .. ....+..+...+.+++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~---------------------------~~~~~~~~~~~~~~i~ 68 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RI---------------------------KEFEVPTPDAKVMCLI 68 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ce---------------------------EEEECCCCCCcceeEE
Confidence 3456789999999999888877789999998651 10 0011112346788999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCC
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLS 506 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~ 506 (656)
+.+++.+.++...++.|..||.. +.... ........+.++++.++|.++++...++.|..||.+ ++.... +.....
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 99999988877778899999988 54432 222234678899999999888877778899999987 444322 333456
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe-
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP- 584 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~- 584 (656)
.+.++++.++++..++...++.|..||. +++..... ..+...+..++++++|.+.++....+.|.+||. +++....
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence 7899999999996666666789999998 56554422 233456889999999987777766778999998 5544332
Q ss_pred eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 585 LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 585 ~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
...+...+.+++++++|+++++...++.|..|+..
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 23345678999999999977777677899999983
No 198
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.52 E-value=2.4e-12 Score=135.86 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=157.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 352 NGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.....++|+|||++|+++.. ++.|.+||+.... ....+..+. ....+.+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~----------------------------~~~~~i~~~-~~~~v~~ 158 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD----------------------------YVEDVTAAA-GCWSVIP 158 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE----------------------------EEEEEGGGT-TEEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc----------------------------EEEEEecCC-CcceeEE
Confidence 34678999999999998864 6889999987521 112101111 2233556
Q ss_pred ccCC-CEEEEEeCCCeEEEEeccC-CceeEE------eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--eE
Q 006220 430 SPLG-DFILSSSADTTIRLWSTKL-NANLVC------YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LR 499 (656)
Q Consensus 430 spd~-~~L~s~s~Dg~I~lwd~~~-~~~~~~------~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~--~~ 499 (656)
.|++ ..+++.+.||.+.+|+... ++.... +..+..++ .+.+++++..++..+.++.+.+||+..... ..
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 7766 5778888999999999865 443311 22223333 334567788888888899999999865432 12
Q ss_pred EecCC----------CCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220 500 IMAGH----------LSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 500 ~~~~~----------~~~V~~v~~~p~~~~l~tgs~-----------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
.+... ......++|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spd 315 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQ 315 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETT
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCC
Confidence 21100 011223789999888887654 3489999999999999998876 899999999
Q ss_pred CCEEEEEECCCcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCC
Q 006220 559 GRYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGS 602 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~ 602 (656)
|++|++++. +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999998887 99999999999 99988877777789999999985
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=1.7e-11 Score=136.71 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=175.3
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
+.....+.++.|||||+++.+++.++.|.+||+.... ......+.... ....+
T Consensus 193 i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--------------------------~~~v~~i~~G~-~P~~i 245 (567)
T 1qks_A 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--------------------------PTTVAEIKIGS-EARSI 245 (567)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------------------CCEEEEEECCS-EEEEE
T ss_pred EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------CcEeEEEecCC-CCcee
Confidence 3445567899999999999999999999999985100 11122222222 34689
Q ss_pred EEc----cCCCEEEEEeC-CCeEEEEeccCCceeEEeeCC----------------------------------------
Q 006220 428 SFS----PLGDFILSSSA-DTTIRLWSTKLNANLVCYKGH---------------------------------------- 462 (656)
Q Consensus 428 ~~s----pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h---------------------------------------- 462 (656)
+|+ |+|+++++++. +++|.++|..+.+.+..+...
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 999 69998776654 589999998877666544311
Q ss_pred ---------------CccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecC-----CCCCeeEEEEcCCCCEEE
Q 006220 463 ---------------NYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHINCNYIA 521 (656)
Q Consensus 463 ---------------~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p~~~~l~ 521 (656)
.....++.|+|+|++|++++ .++.|.++|+.+++.+..+.. |.+.-.. -++|++..++
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~ 404 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVW 404 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEE
Confidence 01123567999999987776 578999999999887766543 3221112 2588755554
Q ss_pred -EEE-CCCcEEEEeCCC-------CeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCC-----e
Q 006220 522 -TGS-SDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDGRYMASGDE-------DGTIMMWDLASG-----R 580 (656)
Q Consensus 522 -tgs-~dg~V~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-------dg~I~iwD~~~~-----~ 580 (656)
++. .+++|.++|..+ .+.++.+......-..+..+|+++++.+... .++|.++|+.+. .
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 443 468999999987 6778888765444455789999999998763 459999999876 2
Q ss_pred -eeEeee--------CCCccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCCceeec
Q 006220 581 -CVTPLM--------GHTSCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 -~~~~~~--------~h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+..+. .....+..+.|+++|+.+..+. .++.|.|+|..+.+.....
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 112221 1235789999999999876653 2799999999998765444
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1.3e-12 Score=132.53 Aligned_cols=191 Identities=11% Similarity=0.085 Sum_probs=159.7
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-CCCee
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-LSDVD 509 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-~~~V~ 509 (656)
.++.|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|++++ +.++.|+.||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999988766 4788999999999888 45788999999 78888888764 34688
Q ss_pred EEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 510 CVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~~------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
++.+.++|+++++.+. ++.|..+|. +|+.+..+.. +......+++.++|+++++...++.|..||.. |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 8999999999999887 788888885 7888777652 11234566789999999999999999999987 9999
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
.++..+ ..+.++.+.++|+++++++.++.|..+|..+++.+....
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 888765 345677888999999999988899999999898877664
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=5.5e-13 Score=140.70 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=140.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-----------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNA-----------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-----------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd 491 (656)
+++.+++++...++++|+.++ +.+|++.... ..... .+.. |..++| ++.+++++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 7779876433 11223 3556 999999 88999998 889999999
Q ss_pred CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I 571 (656)
+++.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|||+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887776667777788888877655 38889999999999999887754 34589999999999 7889999999
Q ss_pred EEEeCCCCee--eEee------e---CCCccEEEEEEcCCCCEEEEEE
Q 006220 572 MMWDLASGRC--VTPL------M---GHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 572 ~iwD~~~~~~--~~~~------~---~h~~~V~~l~~s~~~~~l~sgs 608 (656)
++|+...+.. ..++ . +|...|.++.|.+++.++++-+
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999877775 4455 2 4778999999999999888754
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=1.8e-11 Score=125.22 Aligned_cols=225 Identities=14% Similarity=0.178 Sum_probs=158.0
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
---+..|+++ +.++++...++.|..|+..+.. .. ...+...+.++++++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------------~~-~~~~~~~~~~i~~~~ 63 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----------------------------VQ-RVTMDAPVSSVALRQ 63 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----------------------------EE-EEECSSCEEEEEEBT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----------------------------EE-EEeCCCceEEEEECC
Confidence 3568899995 5567777778999999976411 11 112346789999999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeC----CCccEEEEEEecCCCEEEEEECC---------CcEEEEECCCCcee
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPL 498 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~sgs~D---------g~i~lwd~~~~~~~ 498 (656)
+++++++ . ++.|.+||..+++....... ....+.+++++|+|+++++.... ....+|.++.....
T Consensus 64 dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 64 SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 9995554 4 56799999987765333222 12457899999999976654322 33455555432233
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeC--CCCeeE--EEE---ecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDV--SSGECV--RIF---IGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~--~~~~~~--~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
..+..+....+.++|+|+++.|+. .+.++.|.+||+ .++... +.+ ..+.+....++++++|++.++....+.
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 333334456789999999987755 455789999987 455432 222 233456789999999998888888889
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEEC
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSA 609 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs~ 609 (656)
|..||..+++.+..+..+...+++++|. |+++.|..++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999998899999888887789999998 88776655553
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=9e-13 Score=139.09 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=140.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.++.+++++...++++|+.++ ++||++.......... .. . ... .....+.+ |+.++| +
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~-------------~-~~~-~~~~~lp~-V~~l~f--d 96 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---ST-------------P-LTF-KWEKEIPD-VIFVCF--H 96 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SC-------------C-CCC-SEEEECTT-EEEEEE--E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cc-------------c-ccc-eEEeeCCC-eeEEEE--C
Confidence 588999999999999998875 5569986522100000 00 0 011 11234666 999999 8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (656)
+.+|+++ .++.|++||+.+.........|..++.++.+.+. .+++++.||.+.+||+.++.... +...|+|++
T Consensus 97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~ 169 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD 169 (388)
T ss_dssp TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence 9999998 8899999999887776667778888988887754 39999999999999999777653 346899999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCee--EEEE------e---cCCCCeEEEEEcCCCCEEEEE
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGEC--VRIF------I---GHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~------~---~h~~~i~~l~~sp~g~~L~s~ 565 (656)
|+|+| ++.|..||++++|+...+.+ .+++ . +|...|.+|.|.+++.++++=
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999 78899999999999888776 5556 2 377889999999999998873
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=8.2e-11 Score=119.24 Aligned_cols=235 Identities=6% Similarity=-0.030 Sum_probs=165.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
....+.+++++++|++.++...++.|..|+... .. ...........+.++++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~~---------------------------~~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-GF---------------------------TEYPLPQPDSGPYGITE 111 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------------EEEECSSTTCCEEEEEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCCC-Ce---------------------------EEecCCCCCCCCccceE
Confidence 346799999999999888776688899998652 10 00111123356889999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeE-EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSD 507 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~~ 507 (656)
.++++++++...++.|..|+.. +.... ........+.++++.++|+.+++...++.|..|+. +++.... ...+...
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAA 189 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCC
Confidence 9999988887778899999987 54432 22334557889999999997666666789999998 4444332 2234567
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-ee
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PL 585 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~ 585 (656)
+.+++++++++..++....+.|.+||. ++..... ...+...+.+++++++|++.++...++.|..||. +++... .+
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence 889999999987777666778999998 5554443 2234567899999999987666666789999998 454332 22
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
......+.+++++++|.++++.. . .|..+|.
T Consensus 268 ~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 268 QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 33345688999999998766655 4 6666664
No 205
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=8.9e-12 Score=124.80 Aligned_cols=199 Identities=9% Similarity=0.051 Sum_probs=144.7
Q ss_pred CEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 423 ~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++|..+++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 557789999999765543322223335678999999998666655 889999998765443222
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
......+.+++++++|+.+++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23346789999999999777777788999998765544432223334678899999999777777788999999877655
Q ss_pred eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
......+...+.+++++++|.++++...++.|.+|+.....
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 44333343678999999999888888788999999986643
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=4e-11 Score=124.62 Aligned_cols=195 Identities=9% Similarity=-0.055 Sum_probs=148.3
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
....++.+. .++.+++...+++|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..+.+....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 345667774 345566666789999999999998888864 456789999999854444448999999999998877766
Q ss_pred cCCC-----CCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC------
Q 006220 502 AGHL-----SDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED------ 568 (656)
Q Consensus 502 ~~~~-----~~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d------ 568 (656)
.... .....+++ ++..+++++ .++.|.+||..+++.+..+... .....++++|+|++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence 5332 14567777 345555554 4889999999999988877653 345688999999977776654
Q ss_pred ----CcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 569 ----GTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 569 ----g~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+.|.+||..+++....+... ......++|+|+++.|.++.. .|.+||..+++.
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 78999999999887776543 236789999999998887755 899999987664
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.2e-11 Score=143.21 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=140.3
Q ss_pred CccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc--------
Q 006220 420 HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~-------- 486 (656)
|...+.+++|||||++|+.++.+ .+|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999998876654 4699999999887543 112222357899999 99988887654
Q ss_pred ------EEEEECCCCce--eEEecC--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCC--eeEEEEecCCCC
Q 006220 487 ------ARIWSMDRIQP--LRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSG--ECVRIFIGHRSM 549 (656)
Q Consensus 487 ------i~lwd~~~~~~--~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~--~~~~~~~~h~~~ 549 (656)
|++|++.++.. ...+.. +...+..+.|+|+|++|+.++.++ .|++||+.++ .+...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999977652 333433 333588999999999998877554 8999999887 424555556555
Q ss_pred eEEEEEcCCCCEEEEEECC----CcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 550 ILSLAMSPDGRYMASGDED----GTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
+... ++|+|+.|+..+.+ +.|.+||+.++ .....+..+...+.+++|+ ++.++++...|+..+||.+.
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 5555 35899988887754 45999999874 3333344455667788887 66788888899988877665
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=1.1e-10 Score=121.30 Aligned_cols=222 Identities=10% Similarity=-0.016 Sum_probs=153.4
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
-..+.+|+|+ +.+++++..++.|.+|+..+. ....+ .+...+.++.|++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----------------------------~~~~~-~~~~~v~~i~~~~ 99 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-----------------------------RKTVH-ALPFMGSALAKIS 99 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------------------EEEEE-ECSSCEEEEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----------------------------cEEEE-ECCCcceEEEEeC
Confidence 3578899997 556667777889999997641 11111 1245799999999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeC----CCccEEEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEe
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG----HNYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~ 501 (656)
++++++++ .+ .|.+||..+++....... ....+.+++++|+|+++++... .+.|..++ +++. ..+
T Consensus 100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~ 174 (326)
T 2ghs_A 100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL 174 (326)
T ss_dssp TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE
T ss_pred CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe
Confidence 99877654 44 599999987765432221 1245889999999987665542 24555555 4433 333
Q ss_pred cCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCC--CC-ee-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 502 AGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVS--SG-EC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~--~~-~~-----~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
..+......++|+|+++.++.+ +.++.|.+||+. ++ .. ...+.........++++++|.+.++...++.|.
T Consensus 175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 3333457889999999877655 456899999986 55 32 222222345678899999998877777778999
Q ss_pred EEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEECC
Q 006220 573 MWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGSAD 610 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs~D 610 (656)
+||. +++.+..+..+...+++++|+ +++..|+.++..
T Consensus 255 ~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 677777777777789999998 888776555443
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=3.6e-11 Score=123.41 Aligned_cols=230 Identities=8% Similarity=0.069 Sum_probs=159.9
Q ss_pred EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+...........|+++|+ +++++..++.|..|+... ....+..+...+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------------------------~~~~~~~~~~~~~ 89 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------------------------TVDVLLDATAFTN 89 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------------------------CEEEEEESCSCEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------------------------CEEEEeCCCCccc
Confidence 444455678899999998 667777889999998632 1123334567789
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---C-CCccEEEEEEecCCCEEEE----EEC-------------C
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---G-HNYPVWDVQFNPQGHYFAS----SSH-------------D 484 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~l~s----gs~-------------D 484 (656)
+++++++|+++++...++.|.+|+.+ +....... + ....+.+++++|+|.++++ |.. .
T Consensus 90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 99999999977666666889999986 44322211 1 1134678999999998886 332 2
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCee--EEEEe-cCCCCeEEEEE
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGEC--VRIFI-GHRSMILSLAM 555 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~--~~~~~-~h~~~i~~l~~ 555 (656)
+.|+.||..+++..... .......++|+|+++.|+++... +.|++||+..+.. .+.+. ...+....+++
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 46777777666554433 44567889999999988887665 7899999876542 11221 12344567899
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
+++|++.++ +.+ .|.+||. .++.+..+..+. .+.+++|+++++.|..++.++..
T Consensus 247 d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 247 DRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred CCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence 999995444 444 4999997 677777776555 58899999999888888876433
No 210
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.42 E-value=2.5e-10 Score=127.28 Aligned_cols=229 Identities=11% Similarity=0.073 Sum_probs=165.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
+.+.++++...++.|.+||..+.. ....+. ....+.++.|+|||+++++++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~----------------------------v~~~i~-~g~~p~~v~~SpDGr~lyv~~ 215 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE----------------------------IKTVLD-TGYAVHISRLSASGRYLFVIG 215 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC----------------------------EEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe----------------------------EEEEEe-CCCCccceEECCCCCEEEEEc
Confidence 445566777789999999987521 222222 223566899999999999999
Q ss_pred CCCeEEEEecc--CCceeEEeeCCCccEEEEEEe----cCCCEEEEEE-CCCcEEEEECCCCceeEEecCC---------
Q 006220 441 ADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFN----PQGHYFASSS-HDRTARIWSMDRIQPLRIMAGH--------- 504 (656)
Q Consensus 441 ~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~s----p~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~--------- 504 (656)
.|+.|.+||+. +++.+..+..... ...++|+ |+|+++++++ .++++.++|..+.+++..+...
T Consensus 216 ~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 216 RDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp TTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred CCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 99999999995 7777777765443 5689999 6999988776 5599999999999988776522
Q ss_pred --CCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 006220 505 --LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG 579 (656)
Q Consensus 505 --~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~ 579 (656)
...+..+..++++..+ +....+|.|.++|..+....... .........+.|+|+|++++++. .++.|.++|+.++
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 1257788888876554 44556799999999876433221 22344677899999999887765 6789999999999
Q ss_pred eeeEeeeC-----CCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCC
Q 006220 580 RCVTPLMG-----HTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTT 620 (656)
Q Consensus 580 ~~~~~~~~-----h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~ 620 (656)
+.+..+.. |.+.-..+ ++|++. .++++. .+++|.++|..+
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 88776653 43222222 578744 445553 568999999987
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=3.3e-10 Score=119.87 Aligned_cols=243 Identities=9% Similarity=-0.078 Sum_probs=163.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.++|||||++|.++. .++.|.+||..+.......... . .. ... +.....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~---------------~-~~---~~~--~g~~p~ 128 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP---------------D-AP---RFD--VGPYSW 128 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC---------------C-cc---ccc--cCCCcc
Confidence 999999999999885 3678999998653221110000 0 00 000 012345
Q ss_pred EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEE-eeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEe
Q 006220 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
.+.|+|||++|+++.. +++|.++| .+++.+.. +.... ++.+.|++ ..+++.+.||.+.+||. +++.....
T Consensus 129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 7899999999998874 57899999 98887766 54322 24455554 45677778999999999 77666332
Q ss_pred c-----CCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEec----------CCCCeEEEEEcCCCCEEE
Q 006220 502 A-----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIG----------HRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 502 ~-----~~~~~-V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~----------h~~~i~~l~~sp~g~~L~ 563 (656)
. ....+ .....+.+++..++..+..+.+.+.|+.++. .+..+.. .......+.++|+++.++
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 1 11111 1234556666555555578899999997653 2222211 112244578999998887
Q ss_pred EEEC----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceee
Q 006220 564 SGDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 564 s~~~----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~ 626 (656)
++.. ++.|.++|+.+++.+.++... ...++++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 7653 357999999999999888533 3578999999999 777777 589999999999887654
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=1.2e-11 Score=142.08 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=161.3
Q ss_pred CCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 352 NGLNCASISQDGSLVAGGF-----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~-----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
..+..++|||||++||.+. ....|+|||+.+.... . ..+.+ ....+
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~-~~~~~--~k~~~ 179 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------E-TPLKD--VKFSG 179 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------E-EEEEE--EESCC
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------c-cccCC--ceecc
Confidence 3588899999999999643 2356999998752210 0 01111 11246
Q ss_pred EEEccCCCEEEEEeCCCe-------------EEEEeccCCce--eEEeeC---CCccEEEEEEecCCCEEEEEEC----C
Q 006220 427 ASFSPLGDFILSSSADTT-------------IRLWSTKLNAN--LVCYKG---HNYPVWDVQFNPQGHYFASSSH----D 484 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~-------------I~lwd~~~~~~--~~~~~~---h~~~V~~l~~sp~~~~l~sgs~----D 484 (656)
++|+ |++.|+.++.+.. |++|++.+... ...+.. |...+.++.|+|+|++++.... +
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 7899 9999998887743 99999887653 333332 3345778999999998865542 3
Q ss_pred CcEEEEECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEE-CC---CcEEEEeCCCCee--EEEEecCCCCeEEEEEcC
Q 006220 485 RTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGS-SD---KTVRLWDVSSGEC--VRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 485 g~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~d---g~V~iwd~~~~~~--~~~~~~h~~~i~~l~~sp 557 (656)
..+++||+.++. ....+..+....... |++++..|+..+ .+ +.|..||+.++.. .+.+..|...+. .|++
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 589999998763 445555565555554 566666665544 33 5799999988765 345666766665 8999
Q ss_pred CCCEEEEEECCC---cEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECC----CcEEEEeCCCCCc
Q 006220 558 DGRYMASGDEDG---TIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSAD----CTVKLWDVTTSTK 623 (656)
Q Consensus 558 ~g~~L~s~~~dg---~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~D----g~I~iWd~~~~~~ 623 (656)
++++|+....++ .|.+||+..+ ....+. ...+.+..+.+++++..++....+ ++|..||+.+++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999887765444 6899998744 444443 344677888888888766655444 7899999987654
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=3e-10 Score=116.21 Aligned_cols=202 Identities=10% Similarity=0.101 Sum_probs=143.4
Q ss_pred ecCccCEEEEEEccCCCEEEE-------EeCCCeEEEEeccCCceeEEee----CCCccEEEEEEecC-CCEEEEEECCC
Q 006220 418 QGHSGPVYSASFSPLGDFILS-------SSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNPQ-GHYFASSSHDR 485 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s-------~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp~-~~~l~sgs~Dg 485 (656)
...-....+++|++++.++++ ++.++.|.+||..+++...... ++...+.+++++++ |.++ .++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCC
Confidence 334455678999999988777 6778999999988776543222 24457889999999 6544 444455
Q ss_pred cEEEEECCCCceeEE-ecC----CCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeCCCCeeEEEEec
Q 006220 486 TARIWSMDRIQPLRI-MAG----HLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDVSSGECVRIFIG 545 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~-~~~----~~~~V~~v~~~p~~~~l~tgs~d---------------g~V~iwd~~~~~~~~~~~~ 545 (656)
.|.+||.+ ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 79999988 554333 221 12458899999999887776655 567788865 5544333 3
Q ss_pred CCCCeEEEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCe-----eeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcE
Q 006220 546 HRSMILSLAMS----PDGRYMASG-DEDGTIMMWDLA-SGR-----CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 546 h~~~i~~l~~s----p~g~~L~s~-~~dg~I~iwD~~-~~~-----~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
+......++|+ |+|+.|+.+ ..++.|.+||+. .++ ....+..+. ..+..++++++|.++++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 34457889999 999766555 467899999986 454 233344444 568899999999999988889999
Q ss_pred EEEeCCCCCc
Q 006220 614 KLWDVTTSTK 623 (656)
Q Consensus 614 ~iWd~~~~~~ 623 (656)
.+||..+++.
T Consensus 250 ~~~d~~~g~~ 259 (314)
T 1pjx_A 250 EVFGPDGGQP 259 (314)
T ss_dssp EEECTTCBSC
T ss_pred EEEcCCCCcE
Confidence 9999876554
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.33 E-value=2.1e-10 Score=120.58 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=165.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+++||||+++.++. .++.|.+||..+........... +. + ........
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------g~----r--~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------------AP----R--FLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------------CC----C--CCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC---------------cc----c--cccCCCCc
Confidence 399999999887765 36789999987632211100000 00 0 00011344
Q ss_pred EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEec
Q 006220 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMA 502 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~ 502 (656)
.+.|+|||++++++.. +++|.++|+.+++.+..+.... + ...+....+.|++.+.||++.+.++.. ++......
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence 6899999999888764 6899999999999888876432 1 223444556788888999999999876 44432221
Q ss_pred CCC----CCe-eEEEEc-CCCCEEEEEECCCcEEEEeCCCCee--EEEEe---c-------CCCCeEEEEEcCCCCEEEE
Q 006220 503 GHL----SDV-DCVRWH-INCNYIATGSSDKTVRLWDVSSGEC--VRIFI---G-------HRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 503 ~~~----~~V-~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~~---~-------h~~~i~~l~~sp~g~~L~s 564 (656)
.+. ..+ ....|. ++|++++ .+.+|.|++.|..++.. +..+. . ..+....++++++++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 111 112 124554 5675554 55689999999976642 22221 0 1123345778999988877
Q ss_pred EEC----------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCCceeecccc
Q 006220 565 GDE----------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASG-SADCTVKLWDVTTSTKVLKTEEK 630 (656)
Q Consensus 565 ~~~----------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~ 630 (656)
... .+.|.+.|+.+++.+.++..- ..++++.+++|++ +|+++ ..++.|.++|..+++.+......
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 643 257999999999999888632 3678999999996 66665 45899999999998877665443
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=3.3e-10 Score=118.35 Aligned_cols=243 Identities=9% Similarity=-0.001 Sum_probs=161.7
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 352 NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.....++++++|+++++.. .++.++||.+.. +..... +. .. ....+|-..+.++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~---p~--------------~~----~~~~~~~~~p~gv~~ 74 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPF---PP--------------QS----GNAIITFDTVLGIKS 74 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEES---CC--------------CC----SSCCCCCSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecC---CC--------------cc----cCcccceeEeeEEEE
Confidence 6789999999999988863 234366776652 111100 00 00 011246678999999
Q ss_pred ccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCC------CccEEEEEEecCCCEE-EEEE---CCCcEEEEECCC
Q 006220 430 SPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGH------NYPVWDVQFNPQGHYF-ASSS---HDRTARIWSMDR 494 (656)
Q Consensus 430 spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h------~~~V~~l~~sp~~~~l-~sgs---~Dg~i~lwd~~~ 494 (656)
+++++++++-+. ++.|.+||+.+++.+..+... ...+.++++++++..+ ++.+ .++.|.+||..+
T Consensus 75 d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 75 DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 999886665443 578999999988866665432 2346899999865444 5544 578999999988
Q ss_pred CceeEEecCCC-----------------------------CCeeEEEEcCCCCEEEEEECCC-cEEEEeCC---CCe---
Q 006220 495 IQPLRIMAGHL-----------------------------SDVDCVRWHINCNYIATGSSDK-TVRLWDVS---SGE--- 538 (656)
Q Consensus 495 ~~~~~~~~~~~-----------------------------~~V~~v~~~p~~~~l~tgs~dg-~V~iwd~~---~~~--- 538 (656)
++..+.+.+|. ..+..++|+|+++.|+++..++ .+..++.. .+.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 77766654421 1357899999999998887766 44444421 111
Q ss_pred --eEE--EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 539 --CVR--IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 539 --~~~--~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
... ...++.+....++++++|.++++...++.|.+||..+++....... +-..+.+++|++++.++++.+..+.+
T Consensus 235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 000 1123445567799999999999988899999999856764333322 23468999999999888887755544
Q ss_pred EEE
Q 006220 614 KLW 616 (656)
Q Consensus 614 ~iW 616 (656)
.+|
T Consensus 315 ~~f 317 (343)
T 2qe8_A 315 APL 317 (343)
T ss_dssp GGG
T ss_pred ccc
Confidence 333
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=2e-09 Score=109.87 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=138.4
Q ss_pred CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
+..-.-+..|++++. ++++...++.|..||..++.. ..+. ....+.+++++++|+++++ . ++.|.+||.++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 334456888999655 566667789999999987654 3333 4567899999999995544 4 568999999877644
Q ss_pred EEecC----CCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 499 RIMAG----HLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 499 ~~~~~----~~~~V~~v~~~p~~~~l~tgs~d---------g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
..... ....+..++++|+|+++++.... ..-.+|.+.. ++... +..+......++|+|+|+.|+.
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence 33322 12347889999999966654322 2334554432 33333 3334455688999999987755
Q ss_pred -EECCCcEEEEeC--CCCee-----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 565 -GDEDGTIMMWDL--ASGRC-----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 565 -~~~dg~I~iwD~--~~~~~-----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.+.++.|.+||+ .++.. +..+..+.+.+..++++++|++.++....+.|.+||..+++....
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 455789999997 45543 222333345678999999999888888888999999987765443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=5e-10 Score=120.09 Aligned_cols=198 Identities=10% Similarity=0.034 Sum_probs=144.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~ 499 (656)
....+++|+++++++++...++.|++||..++........... .. ++|++++..++++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999999888887889999999987766555544333 33 99999999999888766 78899887665544
Q ss_pred Ee----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE----EecCCCCe--EEEEEcCC-CCEEEEEECC
Q 006220 500 IM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI----FIGHRSMI--LSLAMSPD-GRYMASGDED 568 (656)
Q Consensus 500 ~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~----~~~h~~~i--~~l~~sp~-g~~L~s~~~d 568 (656)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 32456788999999655666677788999999987764332 22222222 38999995 5566666678
Q ss_pred CcEEEEeCCCCeeeEeeeCCC---------------ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCc
Q 006220 569 GTIMMWDLASGRCVTPLMGHT---------------SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTK 623 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~---------------~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~ 623 (656)
+.|+.||.... +..+.++. .....++++++|+++++-+ .++.|+.|++.++..
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 89999997543 33333332 3478999999999888877 889999999876653
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=1.4e-09 Score=116.23 Aligned_cols=201 Identities=8% Similarity=0.011 Sum_probs=136.6
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (656)
Q Consensus 426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~ 486 (656)
.+.++||+++++++. .++.|.++|..+++.+..+.-. ......+.|+|+|++++++.. +++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999888776 3678999999999888776521 123457899999999999874 578
Q ss_pred EEEEECCCCceeEEecCCCC-------CeeEEEEcCCCCEEE-------------------------------------E
Q 006220 487 ARIWSMDRIQPLRIMAGHLS-------DVDCVRWHINCNYIA-------------------------------------T 522 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~-------~V~~v~~~p~~~~l~-------------------------------------t 522 (656)
|.+.|+.+.+.+..+..... .-..+.++++|.+++ .
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999887766653110 001123334443333 3
Q ss_pred EECCCcEEEEeCCCCeeE--EEEec----------CCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCe
Q 006220 523 GSSDKTVRLWDVSSGECV--RIFIG----------HRSMILSLAMSPDGRYMASGDE----------DGTIMMWDLASGR 580 (656)
Q Consensus 523 gs~dg~V~iwd~~~~~~~--~~~~~----------h~~~i~~l~~sp~g~~L~s~~~----------dg~I~iwD~~~~~ 580 (656)
.+..+.|.+.|...+... ..+.- .......++++|+++.+++... ++.|.++|+.+++
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 333344444444332211 00000 0011123689999887776542 3579999999999
Q ss_pred eeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeec
Q 006220 581 CVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 ~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+.++... ...+++.|+|||+ +++++. .++.|.|+|+.+.+.+...
T Consensus 362 vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99988632 2478999999999 888888 5899999999999877654
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=1.4e-08 Score=105.13 Aligned_cols=193 Identities=11% Similarity=0.014 Sum_probs=134.2
Q ss_pred CEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 423 PVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 423 ~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
-..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|.++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 346788999755 5566667889999999876543 333 34579999999999876654 44 4999999877654433
Q ss_pred cC----CCCCeeEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCc
Q 006220 502 AG----HLSDVDCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGT 570 (656)
Q Consensus 502 ~~----~~~~V~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~ 570 (656)
.. ....+.+++++|+|+++++... .+.|..+| +++... +..+......++|+|+|+.|+.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1235889999999987665442 24566666 555443 33333457789999999877655 45689
Q ss_pred EEEEeCC--CC-e-----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 571 IMMWDLA--SG-R-----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 571 I~iwD~~--~~-~-----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|.+||+. ++ . .+..+......+.+++++++|.++++...++.|.+||. .++.
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence 9999986 55 3 22233334456789999999998888777889999998 4443
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=4.2e-12 Score=134.43 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC-eeE
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD-VDC 510 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~-V~~ 510 (656)
++..+++++.||.|+.||..+++.+..+.. .++.+..+..++..+++++.||.++.||..+++.+..+..+... +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 477899999999999999999999888876 45555556667778888889999999999888877665533211 111
Q ss_pred -EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220 511 -VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (656)
Q Consensus 511 -v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~ 589 (656)
..+ ..+..+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|..||..+|+.+..+..+.
T Consensus 86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 011 134578888899999999999999988776553 24567788899999999999999999998776654221
Q ss_pred ccEEEEEEcCCC---CEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 590 SCVWTLAYSCEG---SLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 590 ~~V~~l~~s~~~---~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
....+++.+. ..+++++.||.|+.||..+++......
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 1222333332 467778999999999999998776543
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=131.12 Aligned_cols=204 Identities=13% Similarity=0.002 Sum_probs=115.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~ 441 (656)
++..+++|+.||.|..||..++. ....+.. +++.+..+..++..+++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~----------------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~ 57 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS----------------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPN 57 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC----------------------------EEEEEEC--CCSCCCC-----CCEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCC----------------------------EEEEecC--CCceecceEcCCCEEEEeCC
Confidence 57889999999999999987532 1122222 33444445567778888889
Q ss_pred CCeEEEEeccCCceeEEeeCCCcc-EE-EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220 442 DTTIRLWSTKLNANLVCYKGHNYP-VW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~-V~-~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (656)
||.|+.||..+++.+..+..+... +. +..+. .+..+++|+.|+.++.||..+++.+..+..+. ...++|++..
T Consensus 58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~ 132 (369)
T 2hz6_A 58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL 132 (369)
T ss_dssp TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence 999999999988887666543211 11 00111 34567888899999999999998887776543 2345678889
Q ss_pred EEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEE-EE
Q 006220 520 IATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVW-TL 595 (656)
Q Consensus 520 l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g---~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~-~l 595 (656)
+++++.|+.|+.||.++|+.+..+..+. .....+++++ ..+++++.||.|..||..+|+.+...... .++. ..
T Consensus 133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~ 209 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFY 209 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEE
T ss_pred EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEE
Confidence 9999999999999999998776554221 1223334332 56777889999999999999988777643 3443 34
Q ss_pred EEcCCCCE
Q 006220 596 AYSCEGSL 603 (656)
Q Consensus 596 ~~s~~~~~ 603 (656)
.++++|..
T Consensus 210 ~~~~dg~~ 217 (369)
T 2hz6_A 210 VWQREGLR 217 (369)
T ss_dssp ECTTSSCE
T ss_pred EecCCceE
Confidence 55666643
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.4e-09 Score=124.89 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=137.8
Q ss_pred CccCEEEEEEccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc--------
Q 006220 420 HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT-------- 486 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~-------- 486 (656)
|...+.+++|||||++|+.+ +...+|++||+.+++.+... .+......++|+ ||+.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 44578889999999988743 33357999999998865431 111113578999 9999999987743
Q ss_pred -----EEEEECCCCce--eEEecC---CCCCeeEEEEcCCCCEEEEEEC----CCcEEEEeCCCCe-eEEEEecCCCCeE
Q 006220 487 -----ARIWSMDRIQP--LRIMAG---HLSDVDCVRWHINCNYIATGSS----DKTVRLWDVSSGE-CVRIFIGHRSMIL 551 (656)
Q Consensus 487 -----i~lwd~~~~~~--~~~~~~---~~~~V~~v~~~p~~~~l~tgs~----dg~V~iwd~~~~~-~~~~~~~h~~~i~ 551 (656)
|++|++.+... ...+.. |...+..+.|+|+|++|+.... ++.|++||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999887653 334433 3445788999999999866543 2589999998763 4455666666655
Q ss_pred EEEEcCCCCEEEEEEC----CCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 006220 552 SLAMSPDGRYMASGDE----DGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS 621 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~----dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~~~~ 621 (656)
.. ++++|..|+..+. .+.|..||+.++.. ...+..|...+. .|+++++.|+....++ .|++|++..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 55 6677766555443 36799999987654 345666665554 8899998887766544 6899998754
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.16 E-value=6.4e-08 Score=102.24 Aligned_cols=196 Identities=8% Similarity=-0.022 Sum_probs=135.0
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (656)
Q Consensus 426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~ 486 (656)
.+.++||+++++.+. .++.|.+||..+.+.+..+... ......+.|+|+|+++++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999998875 3678999999988777665432 123457999999999998874 578
Q ss_pred EEEEECCCCceeEE-ecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEe-----cCCCCe-EEEEEcCC
Q 006220 487 ARIWSMDRIQPLRI-MAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFI-----GHRSMI-LSLAMSPD 558 (656)
Q Consensus 487 i~lwd~~~~~~~~~-~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~-----~h~~~i-~~l~~sp~ 558 (656)
|.++| .+++.+.. +... .|+.+.|.+ +.+++.+.||.+.+||. +++.+.... ....++ ....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888777 5422 134555655 45566778999999999 887763322 112222 23456776
Q ss_pred CCEEEEEECCCcEEEEeCCCCe--eeEeeeC----------CCccEEEEEEcCCCCEEEEEEC----------CCcEEEE
Q 006220 559 GRYMASGDEDGTIMMWDLASGR--CVTPLMG----------HTSCVWTLAYSCEGSLLASGSA----------DCTVKLW 616 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~~--~~~~~~~----------h~~~V~~l~~s~~~~~l~sgs~----------Dg~I~iW 616 (656)
+..++..+..+.+.+.|+..+. .+..+.. .......+.++++++.+..+.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6555544578899999997552 2222211 1123445789999888777653 3579999
Q ss_pred eCCCCCceeec
Q 006220 617 DVTTSTKVLKT 627 (656)
Q Consensus 617 d~~~~~~~~~~ 627 (656)
|+.+.+.+...
T Consensus 304 D~~t~~vv~~i 314 (373)
T 2mad_H 304 TGLVGQTSSQI 314 (373)
T ss_pred ECCCCEEEEEE
Confidence 99988776555
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=7.8e-09 Score=105.86 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=137.9
Q ss_pred eEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
...+..+.....+..|+|+++ +++++..++.|..|+.. +. ...+..+...+.+++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 334445556678899999998 56777788999999984 44 4445556667899999999996666556688999998
Q ss_pred CCCceeEEec---C-CCCCeeEEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220 493 DRIQPLRIMA---G-HLSDVDCVRWHINCNYIAT----GSS-------------DKTVRLWDVSSGECVRIFIGHRSMIL 551 (656)
Q Consensus 493 ~~~~~~~~~~---~-~~~~V~~v~~~p~~~~l~t----gs~-------------dg~V~iwd~~~~~~~~~~~~h~~~i~ 551 (656)
+ ++...... + ....+..++++|+|+++++ |+. .+.|..||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 44322221 1 1234678999999998886 332 256888888777665443 335578
Q ss_pred EEEEcCCCCEEEEEECC------CcEEEEeCCCCeeeEe---e-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 552 SLAMSPDGRYMASGDED------GTIMMWDLASGRCVTP---L-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~d------g~I~iwD~~~~~~~~~---~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.++|+|+|+.|+.+... +.|.+||+..+. +.. + ....+....++++++|++.++. .+ .|.+|+..
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~ 266 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD 266 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTT
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCC
Confidence 89999999988877665 789999987654 211 1 1123445678999999955544 44 49999984
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.08 E-value=6.3e-09 Score=109.28 Aligned_cols=198 Identities=7% Similarity=-0.042 Sum_probs=130.3
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCc
Q 006220 426 SASFSPLGDFILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRT 486 (656)
Q Consensus 426 ~l~~spd~~~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~ 486 (656)
.+.++||+++++++. .+++|.+||+.+++.+..+... ......+.++|+|++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 3688999999999998887643 123457999999999998874 457
Q ss_pred EEE--EECCCCceeEEecC-C-----------------CCCeeEEEE--------------------------cCCCCEE
Q 006220 487 ARI--WSMDRIQPLRIMAG-H-----------------LSDVDCVRW--------------------------HINCNYI 520 (656)
Q Consensus 487 i~l--wd~~~~~~~~~~~~-~-----------------~~~V~~v~~--------------------------~p~~~~l 520 (656)
+.+ +|+.+ +..+.. . .+.+..+.. .+++..+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 88865 222210 0 000000100 2223333
Q ss_pred EEEECCCcEEEEeCCCCe--eEEEEec-------C---CCCeEEEEEcCCCCEEEEEEC---------CCcEEEEeCCCC
Q 006220 521 ATGSSDKTVRLWDVSSGE--CVRIFIG-------H---RSMILSLAMSPDGRYMASGDE---------DGTIMMWDLASG 579 (656)
Q Consensus 521 ~tgs~dg~V~iwd~~~~~--~~~~~~~-------h---~~~i~~l~~sp~g~~L~s~~~---------dg~I~iwD~~~~ 579 (656)
+..+. +.|.+.|..++. .+..+.. + ......++++|+|+.++.+.. ++.+.++|+.++
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33333 666677765432 2221110 0 011122689999998886543 235669999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeecc
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~~ 628 (656)
+.+.++.... ..++++|+|||+ .+++.. .++.|.++|+.+.+.+....
T Consensus 305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9998886443 578999999997 566666 59999999999987765543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=4.4e-09 Score=109.76 Aligned_cols=200 Identities=10% Similarity=0.089 Sum_probs=138.2
Q ss_pred cCEEEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEee-------CCCccEEEEEEecCCCEEEEEEC-----CCcE
Q 006220 422 GPVYSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYK-------GHNYPVWDVQFNPQGHYFASSSH-----DRTA 487 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~l~sgs~-----Dg~i 487 (656)
..+..++++++|+.+++.. .++.++||.+.++. +..+. .|-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 23436666665443 33332 24467899999999876665443 5789
Q ss_pred EEEECCCCceeEEecCC------CCCeeEEEEcCCCCEE-EEEE---CCCcEEEEeCCCCeeEEEEecCC----------
Q 006220 488 RIWSMDRIQPLRIMAGH------LSDVDCVRWHINCNYI-ATGS---SDKTVRLWDVSSGECVRIFIGHR---------- 547 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~------~~~V~~v~~~p~~~~l-~tgs---~dg~V~iwd~~~~~~~~~~~~h~---------- 547 (656)
.+||+.+++.++.+... ...+..+++++++..+ ++.+ .++.|.+||..+++..+.+.+|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988877666422 2356899999865555 4444 57899999999888777654421
Q ss_pred -------------------CCeEEEEEcCCCCEEEEEECCC-cEEEEeCC---CCe-----eeE--eeeCCCccEEEEEE
Q 006220 548 -------------------SMILSLAMSPDGRYMASGDEDG-TIMMWDLA---SGR-----CVT--PLMGHTSCVWTLAY 597 (656)
Q Consensus 548 -------------------~~i~~l~~sp~g~~L~s~~~dg-~I~iwD~~---~~~-----~~~--~~~~h~~~V~~l~~ 597 (656)
..+..|+|+|+|+.|+.+..++ .|..++.. .+. ... ...++.+....+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 1357899999999998887766 44444431 110 000 11133345567999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 598 SCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 598 s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++|.++++...++.|.+||..+++
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred CCCCCEEEEccCCCeEEEEECCCCC
Confidence 9999999999899999999984443
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=4.1e-08 Score=103.97 Aligned_cols=226 Identities=10% Similarity=0.085 Sum_probs=152.2
Q ss_pred EEc--CCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-------cCccCEEEE
Q 006220 358 SIS--QDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-------GHSGPVYSA 427 (656)
Q Consensus 358 ~fs--~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l 427 (656)
.++ +++++|.+. ..++.|.|+|+.+.... .+...... .....-..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~------------------------p~~~k~ie~~~~~~~~g~s~Ph~~ 143 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE------------------------PKIIKVIEPEEVKKVSGYSRLHTV 143 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS------------------------CEEEEEECHHHHHHHHCEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCC------------------------ceeeeeechhhcccccCCCcccce
Confidence 446 788887764 55788999998642111 11111110 011133456
Q ss_pred EEccCCCEEEEEeCC------CeEEEEeccCCceeEEeeCCCc---cEEEEEEecCCCEEEEEE----------------
Q 006220 428 SFSPLGDFILSSSAD------TTIRLWSTKLNANLVCYKGHNY---PVWDVQFNPQGHYFASSS---------------- 482 (656)
Q Consensus 428 ~~spd~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~sgs---------------- 482 (656)
..+|+| +++++..+ |.|.+.|..+++.+..+..... --.++.|+|+++.+++..
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 778999 77776666 7899999999999888863222 234688999999888885
Q ss_pred ---CCCcEEEEECCCCceeEEecCC-C-CCeeEEEE--cCCCCEEEEEEC------CCcEEEEeCCCCeeE--EEE--ec
Q 006220 483 ---HDRTARIWSMDRIQPLRIMAGH-L-SDVDCVRW--HINCNYIATGSS------DKTVRLWDVSSGECV--RIF--IG 545 (656)
Q Consensus 483 ---~Dg~i~lwd~~~~~~~~~~~~~-~-~~V~~v~~--~p~~~~l~tgs~------dg~V~iwd~~~~~~~--~~~--~~ 545 (656)
.+.+|.+||+.+++.+..+... . .....+.| +|+++++++++. +++|.+|....+... ..+ ..
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 3689999999988777777642 1 23445556 999999988774 568887766554321 111 11
Q ss_pred C----------------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC---CeeeEeeeCC-----------C---cc
Q 006220 546 H----------------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS---GRCVTPLMGH-----------T---SC 591 (656)
Q Consensus 546 h----------------~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~---~~~~~~~~~h-----------~---~~ 591 (656)
. ......|.+||||++|+++. ..+.|.+||+.. .+.+..+... . +.
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0 23467899999999988776 468999999852 3455544321 0 13
Q ss_pred EEEEEEcCCCCEEEEEE
Q 006220 592 VWTLAYSCEGSLLASGS 608 (656)
Q Consensus 592 V~~l~~s~~~~~l~sgs 608 (656)
...+.++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 57899999999999888
No 228
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.04 E-value=4.4e-08 Score=102.90 Aligned_cols=235 Identities=15% Similarity=0.084 Sum_probs=158.0
Q ss_pred cCCCCEEEEEeC-----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220 360 SQDGSLVAGGFS-----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (656)
Q Consensus 360 s~dg~~La~g~~-----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~ 434 (656)
.|+++.+.+... ++.|.+.|..+. +....+.....+ .+.++|||+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~----------------------------~v~~~I~vG~~P--~va~spDG~ 90 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAG----------------------------RVIGMIDGGFLP--NPVVADDGS 90 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTT----------------------------EEEEEEEECSSC--EEEECTTSS
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCC----------------------------eEEEEEECCCCC--cEEECCCCC
Confidence 578887777755 578999997752 222233333344 399999999
Q ss_pred EEEEEe----------CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEEC--CCcEEEEECCCC
Q 006220 435 FILSSS----------ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRI 495 (656)
Q Consensus 435 ~L~s~s----------~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~ 495 (656)
++++++ .++.|.+||..+.+.+..+... ....+.+.|+|+|++++++.. ++.|.++|+.+.
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 887765 3678999999999888776432 124567999999999988874 689999999999
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCC----CCeE-EEEEc-CCCCEEEEEECC
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHR----SMIL-SLAMS-PDGRYMASGDED 568 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~----~~i~-~l~~s-p~g~~L~s~~~d 568 (656)
+.+..+.... . ...+....+.+++.+.||.+.+.++.+ ++.......+. .++. ...|. ++|++++ .+.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~ 246 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT 246 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence 9988885321 1 223333446777888899999999876 55433221111 2221 24564 6776655 5558
Q ss_pred CcEEEEeCCCCe--eeEeee---------C-CCccEEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCCceee
Q 006220 569 GTIMMWDLASGR--CVTPLM---------G-HTSCVWTLAYSCEGSLLASGSA----------DCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 569 g~I~iwD~~~~~--~~~~~~---------~-h~~~V~~l~~s~~~~~l~sgs~----------Dg~I~iWd~~~~~~~~~ 626 (656)
|.|.+.|+.++. .+..+. + ..+....++++++++.++.... .+.|.+.|+.+.+.+..
T Consensus 247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~ 326 (386)
T 3sjl_D 247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK 326 (386)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence 999999997653 333332 0 0122335777899888777642 25799999999887765
Q ss_pred cc
Q 006220 627 TE 628 (656)
Q Consensus 627 ~~ 628 (656)
..
T Consensus 327 i~ 328 (386)
T 3sjl_D 327 FE 328 (386)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.02 E-value=2.5e-08 Score=114.00 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=135.1
Q ss_pred CCeEEEEeccCCceeEEeeCCC------------------------------ccE-EEEEEecCCCEEEEEECCCc----
Q 006220 442 DTTIRLWSTKLNANLVCYKGHN------------------------------YPV-WDVQFNPQGHYFASSSHDRT---- 486 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~------------------------------~~V-~~l~~sp~~~~l~sgs~Dg~---- 486 (656)
+|.|+.||..+++.+..+.... ..+ ..++++|++..++.++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 7899999999999887664210 011 25788998889999987764
Q ss_pred ---------------EEEEECCCCceeEEecC--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCee
Q 006220 487 ---------------ARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC 539 (656)
Q Consensus 487 ---------------i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~ 539 (656)
|..||.++++.+..+.. |. ..+.......+|. .++.++.+|.++++|..+|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999998877753 21 1122222233564 788999999999999999998
Q ss_pred EEEEecCC-CC--------------------------------------eEEEEEcCCCCEEEEEEC-------------
Q 006220 540 VRIFIGHR-SM--------------------------------------ILSLAMSPDGRYMASGDE------------- 567 (656)
Q Consensus 540 ~~~~~~h~-~~--------------------------------------i~~l~~sp~g~~L~s~~~------------- 567 (656)
+....... .. -..++|+|+..++++...
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 74432111 00 112688998888777532
Q ss_pred --------------------------------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 568 --------------------------------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 568 --------------------------------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
+|.|..||+.+|+.+-++..+. ++..-.++..+.++++|+.||.|+.
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence 3779999999999988876543 2333355667889999999999999
Q ss_pred EeCCCCCceeeccc
Q 006220 616 WDVTTSTKVLKTEE 629 (656)
Q Consensus 616 Wd~~~~~~~~~~~~ 629 (656)
||..+++.+.+...
T Consensus 501 ~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 501 YAADTGEKLWEQPA 514 (689)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCccceeeeC
Confidence 99999998876654
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=1.9e-08 Score=114.80 Aligned_cols=187 Identities=10% Similarity=0.058 Sum_probs=138.4
Q ss_pred CCeEEEEeccCCceeEEeeCCCcc--------------------------------EEEEEEecCCCEEEEEECCC----
Q 006220 442 DTTIRLWSTKLNANLVCYKGHNYP--------------------------------VWDVQFNPQGHYFASSSHDR---- 485 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~--------------------------------V~~l~~sp~~~~l~sgs~Dg---- 485 (656)
+|.|+.||..+++.+..+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 789999999999988776542211 12578889888988887664
Q ss_pred ---------------cEEEEECCCCceeEEecC--CC-------CCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCe
Q 006220 486 ---------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGE 538 (656)
Q Consensus 486 ---------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~---~~l~tgs~dg~V~iwd~~~~~ 538 (656)
+|..+|.++++.+..+.. |. .....+....+| ..+++++.+|.|+++|..+|+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 599999999998877653 21 122233334467 688999999999999999999
Q ss_pred eEEEEecCCC-----------Ce------------------------EEEEEcCCCCEEEEEECC---------------
Q 006220 539 CVRIFIGHRS-----------MI------------------------LSLAMSPDGRYMASGDED--------------- 568 (656)
Q Consensus 539 ~~~~~~~h~~-----------~i------------------------~~l~~sp~g~~L~s~~~d--------------- 568 (656)
.+..+..... ++ ..++++|++.++++...+
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 9876642210 11 146889988888776432
Q ss_pred ----------------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 569 ----------------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 569 ----------------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|.|..||+.+++.+-++.. ..++++..++..+.+++.++.||.+++||..+
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 7899999999998877753 23444555667788899999999999999999
Q ss_pred CCceeeccc
Q 006220 621 STKVLKTEE 629 (656)
Q Consensus 621 ~~~~~~~~~ 629 (656)
++.+.....
T Consensus 508 G~~lw~~~~ 516 (677)
T 1kb0_A 508 GEKLWEAPT 516 (677)
T ss_dssp CCEEEEEEC
T ss_pred CceeeeeeC
Confidence 998876653
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=1.9e-06 Score=86.02 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=132.6
Q ss_pred cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeE
Q 006220 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~ 499 (656)
..+.+++|++++..|+ +...++.|..++..................++++++++..++.+ ...+.|.+++.+......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4578999999766555 55567899999998655433333333467899999976555544 467899999987644333
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEE-ECCCcEEEE
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMW 574 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iw 574 (656)
...........++++|++..|+.+.. .+.|..+++.... ...+. ........++++|+++.|+.+ ...+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 33333356789999997666665554 3688888875433 33332 333467889999987766555 456789999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|.........+.+ ......++.. ++.++++....+.|.++|..+++.....
T Consensus 195 ~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 195 NPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp ETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 9875443333332 2334567664 3444444446689999999887765444
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.92 E-value=1e-07 Score=101.78 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=129.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 356 CASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 356 ~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+++||||++|.++. .++.|.++|..+.......... +. . . . .......
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~-g~---------------~---r-~-~~g~~P~ 180 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP-DA---------------P---R-F-LVGTYQW 180 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-TC---------------C---C-C-CBSCCGG
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC-Cc---------------c---c-c-ccCCCcc
Confidence 899999999888875 3678999998763322111000 00 0 0 0 0011234
Q ss_pred EEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCc-------cEEEEEEecCC---------------------
Q 006220 426 SASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNPQG--------------------- 475 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp~~--------------------- 475 (656)
.+.|+|||++++++.. +++|.+.|+.+++.+..+..... .-.-+.++++|
T Consensus 181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~ 260 (426)
T 3c75_H 181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH 260 (426)
T ss_dssp GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence 5788999988887764 57899999888877666553111 00012233333
Q ss_pred ----------------CEEEEEECCCcEEEEECCCCceeE--Eec---C-------CCCCeeEEEEcCCCCEEEEEEC--
Q 006220 476 ----------------HYFASSSHDRTARIWSMDRIQPLR--IMA---G-------HLSDVDCVRWHINCNYIATGSS-- 525 (656)
Q Consensus 476 ----------------~~l~sgs~Dg~i~lwd~~~~~~~~--~~~---~-------~~~~V~~v~~~p~~~~l~tgs~-- 525 (656)
..++..+..+.+.+.|+....... .+. . .......++++|+++.+++...
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 333333334444444443221110 000 0 0011223788999888777643
Q ss_pred --------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeeeEee
Q 006220 526 --------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 526 --------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~-~dg~I~iwD~~~~~~~~~~ 585 (656)
++.|.++|..+.+.+..+... .....+.|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999999999888643 2478899999999 888887 5999999999999999887
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.92 E-value=3.7e-07 Score=94.02 Aligned_cols=263 Identities=7% Similarity=0.029 Sum_probs=155.1
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
+.+.+.-....+++|+++++++.++..++.|..|+............ .... . ... ..+.. ........+.+
T Consensus 12 i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~--~~~~--~--~~~-~~g~~--~~~~~~~~~~p 82 (322)
T 2fp8_A 12 ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYA--SPYW--N--KAF-CENST--DAEKRPLCGRT 82 (322)
T ss_dssp EEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEES--CTTC--C--HHH-HTTCC--CGGGHHHHCCE
T ss_pred eecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecc--cccc--c--ccc-ccccc--chhccccCCCC
Confidence 34443334567888999999888888899999998654211100000 0000 0 000 00000 00000112357
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-----CCccEEEEEEec-CCCEEEEEEC---------------
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNP-QGHYFASSSH--------------- 483 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp-~~~~l~sgs~--------------- 483 (656)
.++++.+++..|+.+...+.|..+|..++.. ..+.. ......++++.+ +|+..++-..
T Consensus 83 ~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred ceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 8899998334455555555688888765432 22211 112467899999 8987666432
Q ss_pred --CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCC
Q 006220 484 --DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 484 --Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~ 558 (656)
++.+..||..+++...... .......++|+|+++.|+++ +..+.|..|++.... ....+....+ ...+++.++
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred CCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence 3678888887665433222 22445789999999877665 456899999987521 1222222233 788999999
Q ss_pred CCEEEEEEC----------CCcEEEEeCCCCeeeEeeeCCC----ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 559 GRYMASGDE----------DGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 559 g~~L~s~~~----------dg~I~iwD~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
|++.++... .+.|..+|. .++.+..+.... ..+.++++ .++.++++....+.|.++++...
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 987666544 467888886 577777665432 34666766 46666666667788999987643
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=1.9e-06 Score=85.97 Aligned_cols=220 Identities=9% Similarity=0.053 Sum_probs=140.9
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
.+.+++|++++..|. +...++.|.++++..... ............++++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------------------------~~~~~~~~~~p~~ia~d~ 88 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------------------------TTIIRQDLGSPEGIALDH 88 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------------------------EEEECTTCCCEEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------------------------EEEEECCCCCccEEEEEe
Confidence 578999999765554 555578899999764110 011111224568899999
Q ss_pred CCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEecCCCCC
Q 006220 432 LGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 432 d~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
++..|+ +....+.|.+++.+.................++++|++..++.+.. .+.|..++++..............
T Consensus 89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~ 168 (267)
T 1npe_A 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence 766554 5555788999998754332223222245689999997666555553 368888888754332223233456
Q ss_pred eeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 508 VDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
...++++|++..|+.+. ..+.|..+|.........+.+ ......++.. .+.++++....+.|..+|..+++.+..+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 78999999877776555 567899999876544433333 2334566654 34444444456899999999999888876
Q ss_pred CCC-ccEEEEEEcCCCC
Q 006220 587 GHT-SCVWTLAYSCEGS 602 (656)
Q Consensus 587 ~h~-~~V~~l~~s~~~~ 602 (656)
... ...+.+++.|++.
T Consensus 247 ~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQTRLYGITIALSQC 263 (267)
T ss_dssp CSSCCCCCCEEEECSCC
T ss_pred cccccccceeeecCccC
Confidence 433 2467788888764
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.90 E-value=1.2e-07 Score=97.22 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCC
Q 006220 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD 442 (656)
Q Consensus 363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D 442 (656)
+..|.+|+.++.|..+|.. .. .......+...+.++...+++. ++.++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~----------------------------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~ 156 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GT----------------------------EKWRFKTKKAIYATPIVSEDGT-IYVGSND 156 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SC----------------------------EEEEEECSSCCCSCCEECTTSC-EEEECTT
T ss_pred CCEEEEEecCCEEEEEcCC-CC----------------------------EEEEEcCCCceeeeeEEcCCCE-EEEEcCC
Confidence 4557778788888888865 11 1111112233345556666665 6667788
Q ss_pred CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE
Q 006220 443 TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT 522 (656)
Q Consensus 443 g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t 522 (656)
+.|..+|.. +..+..+......+.++...+++..++ ++ +.+..|| .+++....+......+.++...+++. |++
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 999999998 777766666666677788877777544 44 8899999 67676666665556788888888774 566
Q ss_pred EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC
Q 006220 523 GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS 602 (656)
Q Consensus 523 gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~ 602 (656)
++.++.|..+| .++..+..+......+.++.+.++| .|..++.+|.|..+|. +++.+..+......+.++...++|.
T Consensus 231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 77788888888 4666666666554445556666565 5667778888999995 7777777665556677777877876
Q ss_pred EEEEEECCCcEEEEeCCCC
Q 006220 603 LLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 603 ~l~sgs~Dg~I~iWd~~~~ 621 (656)
|..++.+|.+++......
T Consensus 308 -l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 308 -IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -EEEECTTSCEEEEEC---
T ss_pred -EEEEcCCCeEEEEecccc
Confidence 555888999998876553
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=4.5e-07 Score=90.26 Aligned_cols=195 Identities=8% Similarity=-0.012 Sum_probs=140.6
Q ss_pred CEEEEEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCcee
Q 006220 423 PVYSASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPL 498 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~ 498 (656)
....+.|++++.++++.+. +++|+++|+.+++.+..+.-.. .....+++. +..++.+. .++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3689999998754444443 5799999999999888765322 223355555 44555444 6789999999999988
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM 573 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~i 573 (656)
..+..... ....+++++..++++..++.|.++|..+.+.++.+.... ..+..+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 88863211 123355688888877778999999999998887765321 236678888 7765555556889999
Q ss_pred EeCCCCeeeEeeeCC-------------CccEEEEEEcCCCCE-EEEEECCCcEEEEeCCCCC
Q 006220 574 WDLASGRCVTPLMGH-------------TSCVWTLAYSCEGSL-LASGSADCTVKLWDVTTST 622 (656)
Q Consensus 574 wD~~~~~~~~~~~~h-------------~~~V~~l~~s~~~~~-l~sgs~Dg~I~iWd~~~~~ 622 (656)
.|..+++.+..+... ......++|+|+++. ++++...+.|.+.++....
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999998887532 135689999999765 5556678899999886643
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=1.2e-07 Score=99.60 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=67.7
Q ss_pred EEEcCCCCEEEEEEC-C--------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCC
Q 006220 511 VRWHINCNYIATGSS-D--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMASGD-EDGTIMMWDLASG 579 (656)
Q Consensus 511 v~~~p~~~~l~tgs~-d--------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s~~-~dg~I~iwD~~~~ 579 (656)
++++|+++.++++.. . +.+.++|+.+++.+..+.... ....|+|+|||+ .+++.. .++.|.++|+.++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 789999998887643 2 356699999999988776443 578999999998 556666 5999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcC
Q 006220 580 RCVTPLMGHTSCVWTLAYSC 599 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~ 599 (656)
+.+.++..... .+.+++.+
T Consensus 348 kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 348 QDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEECCCCSC-CCEEECCC
T ss_pred cEEEEEECCCC-CCEEEeec
Confidence 99999875543 35666543
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.84 E-value=1.6e-06 Score=91.13 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=129.7
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe---
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV--- 508 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V--- 508 (656)
++..++.++.++.|..+|..+++.+..+............. +..+++++.++.+..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 35678888899999999999999887666443222222222 4578888899999999999998877665432211
Q ss_pred --eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-------eEEEEEcC--CCCEEEEEECCCcEEEEeCC
Q 006220 509 --DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------ILSLAMSP--DGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 509 --~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-------i~~l~~sp--~g~~L~s~~~dg~I~iwD~~ 577 (656)
..... .+..+++++.++.|..+|..+|+.+..+...... +..+..+| .+..++.++.+|.+..+|..
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 11122 2457888888999999999999988776532110 00011111 25677888889999999999
Q ss_pred CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 578 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
+|+.+..... ....++.. ++..++.++.+|.|..+|..+++......
T Consensus 258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 9988766542 23444444 36678888899999999999998776554
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=2.2e-06 Score=89.98 Aligned_cols=227 Identities=11% Similarity=0.008 Sum_probs=148.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee--cCccCEEEEEEccCCCEEEEE
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ--GHSGPVYSASFSPLGDFILSS 439 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spd~~~L~s~ 439 (656)
++..+.+++.++.|..+|..+....-. .... ....++ .. +..++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~--------------------------~~~~~~~~~~p~----~~--~~~v~v~ 149 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQ--------------------------TKVAGEALSRPV----VS--DGLVLIH 149 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEE--------------------------EECSSCCCSCCE----EE--TTEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE--------------------------EeCCCceEcCCE----EE--CCEEEEE
Confidence 456777788999999999875321110 0000 011222 11 4578888
Q ss_pred eCCCeEEEEeccCCceeEEeeCCCccE-----EEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC-------
Q 006220 440 SADTTIRLWSTKLNANLVCYKGHNYPV-----WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD------- 507 (656)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~------- 507 (656)
+.++.|..+|..+++.+..+....... ...... +..+++++.++.+..+|..+++.+.........
T Consensus 150 ~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 150 TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 889999999999998887765432211 122222 456888888999999999998887665422110
Q ss_pred eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 508 VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 508 V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
+..+...| .+..+++++.++.+..+|..+|+.+..... .....+.. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 00011111 356788888899999999999998866542 33444444 3678888889999999999999987766
Q ss_pred eCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 586 MGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 586 ~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
... ...+.+... .+..|+.++.+|.|.++|..+++......
T Consensus 304 ~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 304 SDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp CTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 521 222222222 25678889999999999999988766544
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=4e-07 Score=103.84 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=139.9
Q ss_pred EEEEEccCCCEEEEEeCCC-------------------eEEEEeccCCceeEEeeCCCc---------cEEEEEEecCC-
Q 006220 425 YSASFSPLGDFILSSSADT-------------------TIRLWSTKLNANLVCYKGHNY---------PVWDVQFNPQG- 475 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg-------------------~I~lwd~~~~~~~~~~~~h~~---------~V~~l~~sp~~- 475 (656)
..++++|++..++.++.++ +|..+|..+++.+..++.... ....+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 3678889888888887664 599999999999877764211 12223334467
Q ss_pred --CEEEEEECCCcEEEEECCCCceeEEecCCCC-----------Ce------------------------eEEEEcCCCC
Q 006220 476 --HYFASSSHDRTARIWSMDRIQPLRIMAGHLS-----------DV------------------------DCVRWHINCN 518 (656)
Q Consensus 476 --~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~-----------~V------------------------~~v~~~p~~~ 518 (656)
..+++++.+|.++++|..+++.+..+..... .+ ..++++|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 6899999999999999999988765542110 00 1568899888
Q ss_pred EEEEEECC-------------------------------------------CcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220 519 YIATGSSD-------------------------------------------KTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (656)
Q Consensus 519 ~l~tgs~d-------------------------------------------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (656)
.+++.+.+ |.|..||+.+++.+..+.. ..++....+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~ 484 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTL 484 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcce
Confidence 88876532 7899999999999887763 344555567
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEE-EC----------------CCcEEEEe
Q 006220 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG-SA----------------DCTVKLWD 617 (656)
Q Consensus 556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sg-s~----------------Dg~I~iWd 617 (656)
+..+..++.++.||.+++||..+|+.+.++.... ....-+.|..+|+.+++. +. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 7788899999999999999999999999887433 222345666788654433 22 36788888
Q ss_pred CCC
Q 006220 618 VTT 620 (656)
Q Consensus 618 ~~~ 620 (656)
+..
T Consensus 565 l~~ 567 (677)
T 1kb0_A 565 VGG 567 (677)
T ss_dssp ETC
T ss_pred ccc
Confidence 763
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.77 E-value=1e-05 Score=82.54 Aligned_cols=227 Identities=8% Similarity=0.033 Sum_probs=140.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
......++|+++++++++...++.|..|+.... ... .....+.+.++++.
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------------~~~-~~~~~~~p~gia~~ 80 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------------QQI-HATVEGKVSGLAFT 80 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------------EEE-EEECSSEEEEEEEC
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------------eEE-EEeCCCCceeEEEc
Confidence 356789999999998887778889988886531 001 11122457899999
Q ss_pred cCCCEEEEEeCCC--eEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEec----
Q 006220 431 PLGDFILSSSADT--TIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRIMA---- 502 (656)
Q Consensus 431 pd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-~~~~~---- 502 (656)
++++++++..... .|..++..+++....... .......++..+.+..+++-..++.|+.+|...+.. +....
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 9999666554332 466677666654332221 122234555555554445444688899999775421 21111
Q ss_pred -----CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220 503 -----GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM 573 (656)
Q Consensus 503 -----~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~i 573 (656)
......+.+ +|++.+|+.+. ..+.|..||+.. +.. ...+... .....++++++|++.++....+.|.+
T Consensus 161 ~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 161 RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 111234455 78887776654 567899999874 321 2222211 34566899999988777777889999
Q ss_pred EeCCCCeeeE--eeeCCCccEEEEEEc---CCCCEEEEEECCC
Q 006220 574 WDLASGRCVT--PLMGHTSCVWTLAYS---CEGSLLASGSADC 611 (656)
Q Consensus 574 wD~~~~~~~~--~~~~h~~~V~~l~~s---~~~~~l~sgs~Dg 611 (656)
+|.. ++... .+...-...++++|. +++..|+.++..+
T Consensus 238 ~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9974 65532 333333568999998 8877777666543
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.77 E-value=1.5e-06 Score=85.62 Aligned_cols=182 Identities=14% Similarity=0.095 Sum_probs=130.9
Q ss_pred CEEEEEEccCCCEEEEEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE
Q 006220 423 PVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR 499 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~ 499 (656)
-...+.|+ ++.++.+++.+| .|+++|+.+++.+....... .....-..+.+..+.... .++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35789998 666667777766 89999999999988776433 333332333455555554 68899999999999998
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.+.... ....+++++..|+.+..++.|.++|..+.+.++.+.... ..++.+.|. +|+..+..-.++.|.+.
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 887432 222333567777777667889999999999888765421 334567776 67655555578899999
Q ss_pred eCCCCeeeEeeeCC------------CccEEEEEEcCCCCEEEEEECC
Q 006220 575 DLASGRCVTPLMGH------------TSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 575 D~~~~~~~~~~~~h------------~~~V~~l~~s~~~~~l~sgs~D 610 (656)
|..+|+.+..+... ....+.|+|+|+++.|...|..
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99999998887532 1356899999988877776643
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.76 E-value=6.8e-07 Score=102.14 Aligned_cols=180 Identities=10% Similarity=0.121 Sum_probs=129.0
Q ss_pred EEEEccCCCEEEEEeCCCe-------------------EEEEeccCCceeEEeeCCC---------ccEEEEEEecCCC-
Q 006220 426 SASFSPLGDFILSSSADTT-------------------IRLWSTKLNANLVCYKGHN---------YPVWDVQFNPQGH- 476 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~-------------------I~lwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~- 476 (656)
.++++|++..++.++.++. |..||..+++.+..++... .++.......+|.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5788898889998888764 9999999999988776421 1222222233564
Q ss_pred --EEEEEECCCcEEEEECCCCceeEEecCCC---------------------------------------CCeeEEEEcC
Q 006220 477 --YFASSSHDRTARIWSMDRIQPLRIMAGHL---------------------------------------SDVDCVRWHI 515 (656)
Q Consensus 477 --~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---------------------------------------~~V~~v~~~p 515 (656)
.++.++.+|.++++|.++++.+....... ..-..++|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 78899999999999999998874322100 0012378889
Q ss_pred CCCEEEEEEC---------------------------------------------CCcEEEEeCCCCeeEEEEecCCCCe
Q 006220 516 NCNYIATGSS---------------------------------------------DKTVRLWDVSSGECVRIFIGHRSMI 550 (656)
Q Consensus 516 ~~~~l~tgs~---------------------------------------------dg~V~iwd~~~~~~~~~~~~h~~~i 550 (656)
+...+++.+. +|.|+.||+.+|+.+..+..+. ++
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 477 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF 477 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence 8888877632 3779999999999998877554 33
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCc-cEEEEEEcCCCCEEEE
Q 006220 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLAS 606 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s 606 (656)
..-.++..|.++++|+.||.++.||.++|+.+.++....+ ...-+.|..+|+..++
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 3345666788999999999999999999999988875432 2234667778874433
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.75 E-value=1.3e-07 Score=103.44 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=138.0
Q ss_pred cCCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEE-e-cCCCEEEEEE------------------CCCcEE
Q 006220 431 PLGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQF-N-PQGHYFASSS------------------HDRTAR 488 (656)
Q Consensus 431 pd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~-s-p~~~~l~sgs------------------~Dg~i~ 488 (656)
+||++++.+.. ++.|.+.|+.+.++...+.- .......+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47887776655 56799999999998775542 2345778888 5 8999998885 245799
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC--------------------------------------cEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK--------------------------------------TVR 530 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg--------------------------------------~V~ 530 (656)
++|.++.+....+.... ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988887776332 457788999999999988553 477
Q ss_pred EEeCCC--Cee-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe------------eeEeeeCCCccEEE
Q 006220 531 LWDVSS--GEC-VRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGR------------CVTPLMGHTSCVWT 594 (656)
Q Consensus 531 iwd~~~--~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~------------~~~~~~~h~~~V~~ 594 (656)
+.|.++ +.. ++.+..- ....++.++|||+++++++ .+.+|.++|+.+.+ .+.... -......
T Consensus 258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence 778777 544 4444322 3456789999999877765 67899999998653 233332 2345789
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 595 LAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 595 l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
++|+++|...++.-.|+.|.+||+..
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhH
Confidence 99999995556677899999999977
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.75 E-value=1.8e-07 Score=96.05 Aligned_cols=183 Identities=14% Similarity=0.040 Sum_probs=132.8
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (656)
+..+..++.++.|..+|.. +.....+..+...+.++...+++. ++.++.++.+..||.. ++....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 5567788888999999998 777666665555667777776776 6667788999999998 777666665556677888
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V 592 (656)
..+++... +++ +.|..|| .+++....+......+.++...++|. |..++.++.|..+| .+++.+..+......+
T Consensus 184 ~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 184 IGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE 257 (330)
T ss_dssp ECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCC
T ss_pred EcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc
Confidence 87777644 444 8899999 78877777766666788888888875 55566778888888 4666666665544444
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 593 WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.++.+.+++. |..++.+|.|..+|. +++....
T Consensus 258 ~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 258 SSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp SCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred ccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence 4566665664 666778888999995 5554433
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.70 E-value=6.6e-07 Score=97.97 Aligned_cols=232 Identities=11% Similarity=0.021 Sum_probs=157.6
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE-c-cCCCEEE
Q 006220 361 QDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF-S-PLGDFIL 437 (656)
Q Consensus 361 ~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s-pd~~~L~ 437 (656)
+||++|.+... ++.|.+.|+....... ...+ ........+++ + |++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~--------------------------ii~i-p~g~~phg~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA--------------------------ILEI-PNAKGIHGLRPQKWPRSNYVF 151 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE--------------------------EEEC-SSCCSEEEEEECCSSBCSEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee--------------------------EEeC-CCCCCCcceeeeecCCCcEEE
Confidence 48888887765 5569999988632211 0011 12234667777 4 8888888
Q ss_pred EEe------------------CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--------------
Q 006220 438 SSS------------------ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-------------- 485 (656)
Q Consensus 438 s~s------------------~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-------------- 485 (656)
+++ .++.+.++|..+.+....+.--. .-..++++|+|.++++++.+.
T Consensus 152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 774 24689999999888777765322 345688999999998888543
Q ss_pred ------------------------cEEEEECCC--Cce-eEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC
Q 006220 486 ------------------------TARIWSMDR--IQP-LRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG 537 (656)
Q Consensus 486 ------------------------~i~lwd~~~--~~~-~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~ 537 (656)
.+.+.|..+ ++. ++.+... ....++.++|+|+++++++ .+.+|.++|+.+.
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 466777766 444 4444422 3567899999999887765 5789999999865
Q ss_pred e------------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeeeEeeeCCCccE---
Q 006220 538 E------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV--- 592 (656)
Q Consensus 538 ~------------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----------~~~~~~~~~h~~~V--- 592 (656)
+ .+.... -......++|+|+|...++...|+.|.+||+.. .+.+.++..|-.+-
T Consensus 310 ~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp HHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred ccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 3 233332 234578899999995555677899999999977 56677776664432
Q ss_pred --EEEEEcCCCCEEEEEEC---CCc----------EEEEeCCCCC
Q 006220 593 --WTLAYSCEGSLLASGSA---DCT----------VKLWDVTTST 622 (656)
Q Consensus 593 --~~l~~s~~~~~l~sgs~---Dg~----------I~iWd~~~~~ 622 (656)
.++.++|||++|+++.. |.. -.++|+..++
T Consensus 389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 12245899999998863 432 2789995433
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.65 E-value=4.4e-06 Score=88.46 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=134.0
Q ss_pred EEc--cCCCEEE-EEeCCCeEEEEeccCC----ceeEEee-------CCCccEEEEEEecCCCEEEEEECC------CcE
Q 006220 428 SFS--PLGDFIL-SSSADTTIRLWSTKLN----ANLVCYK-------GHNYPVWDVQFNPQGHYFASSSHD------RTA 487 (656)
Q Consensus 428 ~~s--pd~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~-------~h~~~V~~l~~sp~~~~l~sgs~D------g~i 487 (656)
.++ +++++|+ +|..+++|.++|+.+. +....+. .....-..+..+|+| .++++..+ |.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 7777765 5667889999999755 4444442 111234567888999 66666655 789
Q ss_pred EEEECCCCceeEEecCCCCC---eeEEEEcCCCCEEEEEE-------------------CCCcEEEEeCCCCeeEEEEec
Q 006220 488 RIWSMDRIQPLRIMAGHLSD---VDCVRWHINCNYIATGS-------------------SDKTVRLWDVSSGECVRIFIG 545 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~---V~~v~~~p~~~~l~tgs-------------------~dg~V~iwd~~~~~~~~~~~~ 545 (656)
.++|..+.+.+..+...... -..+.|+|+++.+++.. .+.+|.+||+.+++.+.++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999999999888632221 33578899999888874 368999999999988887764
Q ss_pred C-C-CCeEEEEE--cCCCCEEEEEE------CCCcEEEEeCCCCee--eEe--eeCC----------------CccEEEE
Q 006220 546 H-R-SMILSLAM--SPDGRYMASGD------EDGTIMMWDLASGRC--VTP--LMGH----------------TSCVWTL 595 (656)
Q Consensus 546 h-~-~~i~~l~~--sp~g~~L~s~~------~dg~I~iwD~~~~~~--~~~--~~~h----------------~~~V~~l 595 (656)
- . .....+.| +|+|+++++++ .+++|.+|....+.. ... +... ......+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 2 1 23445555 99999888776 466888776654421 111 1100 1346789
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEeCCCC
Q 006220 596 AYSCEGSLLASGSA-DCTVKLWDVTTS 621 (656)
Q Consensus 596 ~~s~~~~~l~sgs~-Dg~I~iWd~~~~ 621 (656)
.+|+||++|.++.. .+.|.++|+...
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999999877764 689999999643
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=8.8e-06 Score=79.40 Aligned_cols=185 Identities=12% Similarity=0.022 Sum_probs=130.1
Q ss_pred cCc--cCEEEEEEccCCCEEEEEeCC--CeEEEEeccCCceeEEeeCCCcc-EEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 419 GHS--GPVYSASFSPLGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 419 ~h~--~~V~~l~~spd~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
.|. .-...+.|++ +.++.+.+.+ +.|+.+|+.+++.+......... --.+.+. .+..+...-.++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 454 4567999986 5556666665 48999999999998877643321 1234443 23334444578999999999
Q ss_pred CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 006220 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~d 568 (656)
+.+.+..+..... -..++ +++..|+++..++.|.++|..+.+.++.+.... ..++.+.+. +|+..+..-.+
T Consensus 94 tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 94 TLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp TTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999988874322 23443 567777777778899999999999888776422 245667766 66655555568
Q ss_pred CcEEEEeCCCCeeeEeeeCC------------C-ccEEEEEEcCCCCEEEEEEC
Q 006220 569 GTIMMWDLASGRCVTPLMGH------------T-SCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h------------~-~~V~~l~~s~~~~~l~sgs~ 609 (656)
..|.+.|..+|+.+..+... . ...+.|+++|+++.|...+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 89999999999998877521 1 35689999998776666654
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=6e-06 Score=81.28 Aligned_cols=179 Identities=12% Similarity=0.007 Sum_probs=128.3
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
.-...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ... -.+.+.. +..++..-.++.+.+||..+.+.+.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 345788887 3566778888899999999999988776 22 223 3355542 2334444478999999999999998
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.+.... .-..++ +++..|+.+..++.|+++|..+.+.++.+.... ..++.+.|. +|+..+..-.++.|.+.
T Consensus 131 ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 887432 223444 567888888788999999999999888775422 245667777 77655555568899999
Q ss_pred eCCCCeeeEeeeCC-------------CccEEEEEEcCCCCEEEEEE
Q 006220 575 DLASGRCVTPLMGH-------------TSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 575 D~~~~~~~~~~~~h-------------~~~V~~l~~s~~~~~l~sgs 608 (656)
|..+|+.+..+... ....+.|+|+|+++.|...+
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999988877521 13578999999766555544
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=1.8e-05 Score=78.64 Aligned_cols=194 Identities=7% Similarity=0.007 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 354 LNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
...++|++|+.+.++.+. ++.|+++|+.+...... ..+..+ .....+++.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~--------------------------i~l~~~-~fgeGi~~~- 74 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI--------------------------HKMDDS-YFGEGLTLL- 74 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE--------------------------EECCTT-CCEEEEEEE-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE--------------------------EecCCC-cceEEEEEe-
Confidence 579999998755555443 68999999876322111 001111 112245554
Q ss_pred CCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-----
Q 006220 432 LGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL----- 505 (656)
Q Consensus 432 d~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~----- 505 (656)
+..| ++.-.++.+.++|..+.+.+..+......-+. ++++|..++++..++++.++|..+.+.+..+....
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 4444 44556789999999999888887633122233 55577777777778999999999988887766321
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCE-EEEEECCCcE
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRY-MASGDEDGTI 571 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~-L~s~~~dg~I 571 (656)
..++.+.|. ++...+....++.|.+.|..+++.+..+... ......|+|+|+++. ++++...+.+
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 236678887 6644444446789999999999999887632 135689999999865 4555577888
Q ss_pred EEEeCCCC
Q 006220 572 MMWDLASG 579 (656)
Q Consensus 572 ~iwD~~~~ 579 (656)
...++...
T Consensus 231 ~~i~l~~~ 238 (266)
T 2iwa_A 231 FEIKLHLV 238 (266)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 88887543
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.55 E-value=9.4e-05 Score=76.99 Aligned_cols=204 Identities=10% Similarity=-0.029 Sum_probs=131.8
Q ss_pred ccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCcee
Q 006220 421 SGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
...+.+++|++.+..|+ +-...+.|..+++..................+++.+.+. .+++-...+.|.+.+++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 34578999998666555 545678899999886654443333333456889987544 4455556789999998876555
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEe
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD 575 (656)
..+.........++++|.+..|+.+. .. +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 45545556788999999666665544 44 7888888764333222222334578999998776666554 567899999
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+........+...-....++++ .++.++++-...+.|..++..+++...
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 280 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccE
Confidence 8643322223233345678888 345566666667888888865555433
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=4.6e-06 Score=94.90 Aligned_cols=187 Identities=9% Similarity=0.068 Sum_probs=130.7
Q ss_pred CCeEEEEeccCCceeEEeeCC--C-----------------------------ccEEEEEEecCCCEEEEEECCC-----
Q 006220 442 DTTIRLWSTKLNANLVCYKGH--N-----------------------------YPVWDVQFNPQGHYFASSSHDR----- 485 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h--~-----------------------------~~V~~l~~sp~~~~l~sgs~Dg----- 485 (656)
+|.|..+|..+++.+..+... . .....+++.|.+..++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 589999999999988776521 0 0112468888888888888766
Q ss_pred --------------cEEEEECCCCceeEEecC--CC-------CCeeEEEEcCCCC---EEEEEECCCcEEEEeCCCCee
Q 006220 486 --------------TARIWSMDRIQPLRIMAG--HL-------SDVDCVRWHINCN---YIATGSSDKTVRLWDVSSGEC 539 (656)
Q Consensus 486 --------------~i~lwd~~~~~~~~~~~~--~~-------~~V~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~ 539 (656)
.|..+|.++++.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 399999999998877763 22 2222233334665 688999999999999999998
Q ss_pred EEEEecCC------------CCe------------------------EEEEEcCCCCEEEEEE-----------------
Q 006220 540 VRIFIGHR------------SMI------------------------LSLAMSPDGRYMASGD----------------- 566 (656)
Q Consensus 540 ~~~~~~h~------------~~i------------------------~~l~~sp~g~~L~s~~----------------- 566 (656)
+....... .++ ..++++|+...++...
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 85433211 000 1267888766665421
Q ss_pred -------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 567 -------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 567 -------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+|.|..||+.+|+.+-+...+. ++....+...+.+++.++.||.|++||..+++.+...
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 23789999999999887765432 2233344456788999999999999999999987766
Q ss_pred cc
Q 006220 628 EE 629 (656)
Q Consensus 628 ~~ 629 (656)
..
T Consensus 496 ~~ 497 (668)
T 1kv9_A 496 EA 497 (668)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.51 E-value=0.00013 Score=77.04 Aligned_cols=204 Identities=10% Similarity=-0.045 Sum_probs=133.1
Q ss_pred ccCEEEEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCcee
Q 006220 421 SGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
...+..++|++.+..| ++-...+.|..+++........+.........+++.+.+.. +++-...+.|.+.+++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457899999766555 45556788999998866543333333334567899875444 455556788999888766555
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEE-CC-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEe
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGS-SD-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWD 575 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs-~d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD 575 (656)
..+.........++++|.+..|+.+. .. +.|..++.............-.....|+|+|++..|+.+ +..+.|..+|
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 55555556788999999776666554 33 678888876544333333334457899999876666555 4567899999
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+........+........++++ ..+.++++-...+.|..++..++....
T Consensus 275 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 275 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence 8643332223333345678888 345566666677889888866665443
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.49 E-value=0.00017 Score=83.77 Aligned_cols=244 Identities=9% Similarity=0.058 Sum_probs=156.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|.++...+++.+.+ |+.++-|.+|+............ . .. . ..-....|.++...
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~--~-------------~~-~-----~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHS--P-------------SN-P-----KSISSNYIRSLAMD 271 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCC--T-------------TC-T-----TSCSCSBEEEEEEC
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecC--C-------------CC-c-----cccCCCeEEEEEEc
Confidence 45688888888777554 55554588888654211100000 0 00 0 00123569999998
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeC-------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~- 502 (656)
++|.+.+ |+.+ -|.+|+..++........ ....|.++...++|. +..|+.++-|..|+..+........
T Consensus 272 ~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~ 348 (795)
T 4a2l_A 272 SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI 348 (795)
T ss_dssp TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCC
T ss_pred CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCC
Confidence 8887544 4445 489999876654332211 235699999998876 6667777788999876543222211
Q ss_pred -----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--------CCCCeEEEEEcCCCCEEEEEECCC
Q 006220 503 -----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--------HRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 503 -----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--------h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
.....|.++...++|+ |..|+.++-|..||..++........ ....|.+++..++|+.|..|+.++
T Consensus 349 ~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~ 427 (795)
T 4a2l_A 349 PYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG 427 (795)
T ss_dssp TTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC
Confidence 1235688998888776 56688888899999887765443211 235689999988988677788777
Q ss_pred cEEEEeCCCCeeeEeee----CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 570 TIMMWDLASGRCVTPLM----GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
-|..||..+++...-.. .+...|.++...++|.+.+.. . +.|.+||..++.
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 79999988775433221 134679999999888866654 4 458889876643
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.49 E-value=0.00013 Score=84.84 Aligned_cols=239 Identities=9% Similarity=-0.016 Sum_probs=157.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|.++...++|. |.+|+.++-|..|+............ ... ..-....|.++...+
T Consensus 310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-----------------~~~-----~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI-----------------PYK-----NSLSDNVVSCIVEDK 366 (795)
T ss_dssp SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCC-----------------TTS-----SSCSCSSEEEEEECT
T ss_pred CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCC-----------------CCC-----CCCCCCeeEEEEECC
Confidence 4699999999887 55577878888888653211000000 000 001235689999888
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeC--------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKG--------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~- 502 (656)
+|. |..|+.++-|..|+..++........ ....|.++...++|..+..|+.++-+.+||..+++......
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 776 55577777799999876654332211 23568999998888867778887889999988765443322
Q ss_pred ---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec------CCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220 503 ---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMILSLAMSPDGRYMASGDEDGTIMM 573 (656)
Q Consensus 503 ---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~------h~~~i~~l~~sp~g~~L~s~~~dg~I~i 573 (656)
.....|.++...++|+..+ |+. +-+.+||..+++....... ....|.++...++|++.+.. . +-|..
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~ 521 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSV 521 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEE
Confidence 1345788999888876544 445 4588999888765443221 23578999999988765544 4 45888
Q ss_pred EeCCCCeeeEeee-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 574 WDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 574 wD~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
||..+++. .+. .....|.++..+++|.+.++.. . -|..||..+..
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 99877765 222 1235789999999998666543 3 57888876543
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=1e-05 Score=93.49 Aligned_cols=239 Identities=9% Similarity=0.009 Sum_probs=133.7
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-CcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 353 GLNCASIS-QDGSLVAGGFS-DS----SLKVWDMAKL-GQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 353 ~V~~l~fs-~dg~~La~g~~-dg----~I~Iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+...+|| |||++||.+.. +| .|+++|+.+. ... ... +. ....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------------------------~~~---~~---~~~~ 224 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------------------------ADK---VS---GTNG 224 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------------------------CCC---EE---EECS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------------------------Ccc---cc---Ccee
Confidence 57889999 99999987644 23 4999998752 100 000 00 1124
Q ss_pred EEEEccCCCEEEEEeCC-----CeEEEEeccCCce--eEEeeC-CCccEEEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 006220 426 SASFSPLGDFILSSSAD-----TTIRLWSTKLNAN--LVCYKG-HNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDR 494 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~--~~~~~~-h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~ 494 (656)
+++|+|||+.|+..+.+ ..|.++++.++.. ...+.. ......++.|+|+|++|+..+. ...|+++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 67899999988776665 3588888877642 233332 2334567899999999887663 34688889887
Q ss_pred Cc-ee--EEec-CCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEE-EecCCCC--eEEEEEcCCCCEEE
Q 006220 495 IQ-PL--RIMA-GHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRI-FIGHRSM--ILSLAMSPDGRYMA 563 (656)
Q Consensus 495 ~~-~~--~~~~-~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~-~~~h~~~--i~~l~~sp~g~~L~ 563 (656)
+. .. +.+. ........+.|+..+.+++.+..+ ..|..+|+.++..... +..+... +..+.+. .+.+++
T Consensus 305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~ 383 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV 383 (751)
T ss_dssp CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence 52 22 3333 344445556655444444444433 2577777765322222 3334433 4445544 234555
Q ss_pred EEECCCc--EEEEeC-------CCCeeeEeeeCC-CccEEEEEE----cCCCC-EEEEEECC---CcEEEEeCCCCC
Q 006220 564 SGDEDGT--IMMWDL-------ASGRCVTPLMGH-TSCVWTLAY----SCEGS-LLASGSAD---CTVKLWDVTTST 622 (656)
Q Consensus 564 s~~~dg~--I~iwD~-------~~~~~~~~~~~h-~~~V~~l~~----s~~~~-~l~sgs~D---g~I~iWd~~~~~ 622 (656)
+...+|. |.++|+ ..++.+..+... ...+..+.+ ++++. ++++.+.. +.+..+|+.+++
T Consensus 384 ~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 384 AGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6667775 555564 333313333211 122334433 34554 55554433 457777877654
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.47 E-value=8.8e-05 Score=73.20 Aligned_cols=199 Identities=9% Similarity=0.073 Sum_probs=133.7
Q ss_pred EeecCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 416 LYQGHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. +..+..+.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445557899999999876554 56778889999988 777766642 23467789999888776766577889999876
Q ss_pred CCce---eEEec------CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCeeEEEEe-------cCCCCeEEEE
Q 006220 494 RIQP---LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFI-------GHRSMILSLA 554 (656)
Q Consensus 494 ~~~~---~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~---~~~~~~~~~-------~h~~~i~~l~ 554 (656)
.... +.... ........++|+|.++.|+++.......+|.+. .+..+..+. .+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 123456899999999888887766555555543 112222221 1234578999
Q ss_pred EcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 555 MSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 555 ~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
+.|. |++++.......+.++|.. |+.+..+.-.. ..--.|+|.++|++.++ +..+.++++.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 9995 5566667777889999964 66665554221 25679999999986555 6666555554
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00064 Score=69.53 Aligned_cols=201 Identities=8% Similarity=-0.037 Sum_probs=128.0
Q ss_pred ccCEEEEEEccCCCEE-EEEeCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCC
Q 006220 421 SGPVYSASFSPLGDFI-LSSSADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDR 494 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~ 494 (656)
...+.+++|++.+..| ++-...+.|..+++.. ......+........++++.+.+. .+++-...+.|.+++.+.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3567899999876555 4555678999999875 222222322223457899987544 445556778999999886
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCCc
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGD-EDGT 570 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~-~dg~ 570 (656)
......+.........++++|.+..|+.+... +.|..+++. |.....+ ...-.....|+++|++..|+.+. ..+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 54444444445678899999976666655543 688888875 3333333 23345678999999877666554 5578
Q ss_pred EEEEeCCCCeeeEee-eC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 571 IMMWDLASGRCVTPL-MG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 571 I~iwD~~~~~~~~~~-~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|..+|+.... ...+ .. .-....++++. .+.++++-...+.|..++..+++..
T Consensus 188 I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 188 ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 9999986432 2222 21 22345778885 4556666666788999987666543
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.45 E-value=4.1e-05 Score=75.36 Aligned_cols=187 Identities=10% Similarity=0.123 Sum_probs=124.2
Q ss_pred eeCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 348 INTHNG--LNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 348 ~~~~~~--V~~l~fs~dg~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
..|... ...+.|+ ++.+..+.+.+| .|+++|+.+..... ...- ...
T Consensus 37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~----------------------------~~~l-~~~ 86 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ----------------------------QIEL-GKR 86 (262)
T ss_dssp EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE----------------------------EEEC-CTT
T ss_pred ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE----------------------------EEec-CCc
Confidence 345443 4788998 677666666665 89999988633211 1111 122
Q ss_pred EEEEEEccCCCEEEEE-eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 424 VYSASFSPLGDFILSS-SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 424 V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.......++++.|... -.++.+.+||..+.+.+..+.... .-+.++ +++..++.+..++.|.++|..+.+.+..+.
T Consensus 87 ~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 87 YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence 2222222335555444 458899999999999998887533 224555 467777666667889999999988887766
Q ss_pred CCC-----CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC------------CCCeEEEEEcCCCCEEEEE
Q 006220 503 GHL-----SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH------------RSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 503 ~~~-----~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h------------~~~i~~l~~sp~g~~L~s~ 565 (656)
... ..++.+.|. +|...+..-.+..|.+.|.++|+.+..+... ....+.|+|+|+++.|+..
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 321 334557776 6754444446889999999999999887642 1346889999998877777
Q ss_pred ECC
Q 006220 566 DED 568 (656)
Q Consensus 566 ~~d 568 (656)
+..
T Consensus 243 GK~ 245 (262)
T 3nol_A 243 GKL 245 (262)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.44 E-value=1.7e-05 Score=88.41 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=130.3
Q ss_pred CEEEEEeC------CCeEEEEeccCCceeEEeeCCCcc-------------------------------------E-EEE
Q 006220 434 DFILSSSA------DTTIRLWSTKLNANLVCYKGHNYP-------------------------------------V-WDV 469 (656)
Q Consensus 434 ~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V-~~l 469 (656)
..++.++. ++.|..+|..+++.+..+...... + ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555544 789999999999988766532110 1 135
Q ss_pred EEecCCCEEEEEECC----------------CcEEEEECCCCceeEEecCC--C-------CCeeEEEEcCCCC---EEE
Q 006220 470 QFNPQGHYFASSSHD----------------RTARIWSMDRIQPLRIMAGH--L-------SDVDCVRWHINCN---YIA 521 (656)
Q Consensus 470 ~~sp~~~~l~sgs~D----------------g~i~lwd~~~~~~~~~~~~~--~-------~~V~~v~~~p~~~---~l~ 521 (656)
++.+....++.++.+ +.|..+|.++++.+-.+... . .....+...++|+ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 667766677666532 35999999999988776532 1 1111122234674 577
Q ss_pred EEECCCcEEEEeCCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCEE
Q 006220 522 TGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYM 562 (656)
Q Consensus 522 tgs~dg~V~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~l~~sp~g~~L 562 (656)
.++.+|.++++|..+|+.+..+.... .++ ..++++|+...+
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 400 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL 400 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence 88899999999999999887654221 111 235788887777
Q ss_pred EEEE-------------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220 563 ASGD-------------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 563 ~s~~-------------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
++.. .+|.|..||..+++.+-++.... .+.+..+...+..++
T Consensus 401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~ 479 (571)
T 2ad6_A 401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVW 479 (571)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEE
T ss_pred EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEE
Confidence 6653 34789999999999887765322 222222233456778
Q ss_pred EEECCCcEEEEeCCCCCceeeccc
Q 006220 606 SGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 606 sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
.++.||.|+.||..+++.+.....
T Consensus 480 ~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 480 YATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEcCCCeEEEEECCCCCEEEEEeC
Confidence 899999999999999998876643
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=6.2e-05 Score=80.77 Aligned_cols=234 Identities=10% Similarity=0.071 Sum_probs=138.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
....++++| ++..|.++...+.|+.+|+... .+..+.........++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------------------~v~~~~~~~~~P~~ia~d~ 188 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------------------YVSTVYSGLSKVRTICWTH 188 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------------------EEEEEECCCSCEEEEEECT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------------------EEEEEecCCCCcceEEEeC
Confidence 457889997 3444555444477888887641 1222223445678999999
Q ss_pred CCCEEEEEeC-CC----eEEEEeccCCcee--EEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220 432 LGDFILSSSA-DT----TIRLWSTKLNANL--VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (656)
Q Consensus 432 d~~~L~s~s~-Dg----~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~- 502 (656)
++++|+.+.. ++ .+.+++.. +... ..+.. .....+++++| +|.++++-..++.|..++.+.........
T Consensus 189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 9996665554 22 23334433 3221 22222 22356789999 67766666677899999998765422222
Q ss_pred CCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCC--Cee--EEEEecCC---------------CCeE-EEEEc-----
Q 006220 503 GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDVSS--GEC--VRIFIGHR---------------SMIL-SLAMS----- 556 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~--~~~--~~~~~~h~---------------~~i~-~l~~s----- 556 (656)
+.......++|+|++++|+.+ ...+.|+.++... +.. +..+.+.. .... .++..
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~ 346 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYK 346 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGT
T ss_pred CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccc
Confidence 222456789999999966555 4567899987653 322 22232210 1122 44443
Q ss_pred ---CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC---------C---------ccEEEEEEcCC-CCEEEEEECCCcEE
Q 006220 557 ---PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH---------T---------SCVWTLAYSCE-GSLLASGSADCTVK 614 (656)
Q Consensus 557 ---p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h---------~---------~~V~~l~~s~~-~~~l~sgs~Dg~I~ 614 (656)
++|.+.++-...+.|+.++ ..|.... +.+. . .....++++++ +.++++-...+.|+
T Consensus 347 ~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 347 GSSDEYDFYFCDRENHCIRILT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp TSSCCEEEEEEEGGGTEEEEEC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred ccCCCCeEEEEECCCcEEEEEC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 3455555555667888888 4564332 2221 1 14789999994 65666555667788
Q ss_pred EEeCC
Q 006220 615 LWDVT 619 (656)
Q Consensus 615 iWd~~ 619 (656)
.+++.
T Consensus 425 ~i~~e 429 (430)
T 3tc9_A 425 KIGYE 429 (430)
T ss_dssp EEEEC
T ss_pred EEccC
Confidence 77753
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.39 E-value=3.1e-05 Score=86.55 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=126.0
Q ss_pred CCCeEEEEeccCCceeEEeeCCCcc-------------------------------------EE-EEEEecCCCEEEEEE
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNYP-------------------------------------VW-DVQFNPQGHYFASSS 482 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~-------------------------------------V~-~l~~sp~~~~l~sgs 482 (656)
.+|.|+.+|..+++.+-.+...... +| .+++.+....++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3799999999999988766532211 11 346667777888777
Q ss_pred CC----------------CcEEEEECCCCceeEEecCCCCC---------eeEEEEc-CCC---CEEEEEECCCcEEEEe
Q 006220 483 HD----------------RTARIWSMDRIQPLRIMAGHLSD---------VDCVRWH-INC---NYIATGSSDKTVRLWD 533 (656)
Q Consensus 483 ~D----------------g~i~lwd~~~~~~~~~~~~~~~~---------V~~v~~~-p~~---~~l~tgs~dg~V~iwd 533 (656)
.+ +.|..+|.++++.+-.+...... ..-+... .+| ..++.++.+|.++++|
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence 65 37999999999988776632211 1112222 467 5677789999999999
Q ss_pred CCCCeeEEEEecCC-------------CCe--------------------------EEEEEcCCCCEEEEEE--------
Q 006220 534 VSSGECVRIFIGHR-------------SMI--------------------------LSLAMSPDGRYMASGD-------- 566 (656)
Q Consensus 534 ~~~~~~~~~~~~h~-------------~~i--------------------------~~l~~sp~g~~L~s~~-------- 566 (656)
..+|+.+....... .++ ..++++|+..++++..
T Consensus 340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (599)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence 99999887654211 111 2356777766655431
Q ss_pred -------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 567 -------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 567 -------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
..|.|.-||+.+|+.+-+.... .++.+-.....+.+++.++.||.|+.
T Consensus 420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEE
Confidence 3478999999999887666421 11111112234667888999999999
Q ss_pred EeCCCCCceeeccc
Q 006220 616 WDVTTSTKVLKTEE 629 (656)
Q Consensus 616 Wd~~~~~~~~~~~~ 629 (656)
||..+++.+.+...
T Consensus 499 ~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 499 RDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCCEEEEeeC
Confidence 99999998877643
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.38 E-value=6e-05 Score=77.24 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=125.1
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--------------------CCccEEEEEEecCCCEEEEEE
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--------------------HNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--------------------h~~~V~~l~~sp~~~~l~sgs 482 (656)
...+++|++++++++++..++.|..|+..++... .+.. ....+.++++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3457889999988888888999999998765432 2211 012468899998333455565
Q ss_pred CCCcEEEEECCCCceeEEecC-----CCCCeeEEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCCee
Q 006220 483 HDRTARIWSMDRIQPLRIMAG-----HLSDVDCVRWHI-NCNYIATGSS-----------------DKTVRLWDVSSGEC 539 (656)
Q Consensus 483 ~Dg~i~lwd~~~~~~~~~~~~-----~~~~V~~v~~~p-~~~~l~tgs~-----------------dg~V~iwd~~~~~~ 539 (656)
..+.+..+|..++.. ..+.. .......+++.+ +|+..++... ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688888765432 22221 123467899999 8976666432 36789999877765
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEEC-------
Q 006220 540 VRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSA------- 609 (656)
Q Consensus 540 ~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs~------- 609 (656)
...... ......|+++|+|++|+.+ +..+.|..|++.... ....+....+ ...++++++|+++++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 433222 2334679999999876665 456899999986421 1111111223 788999999997777654
Q ss_pred ---CCcEEEEeCC
Q 006220 610 ---DCTVKLWDVT 619 (656)
Q Consensus 610 ---Dg~I~iWd~~ 619 (656)
.+.|..+|..
T Consensus 256 ~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 256 GRVDPKGIKFDEF 268 (322)
T ss_dssp SCEEEEEEEECTT
T ss_pred CCCccEEEEECCC
Confidence 4567777753
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=9.1e-06 Score=93.85 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred CEEEEEEc-cCCCEEEEEeC-C----CeEEEEeccCC-ceeEE-eeCCCccEEEEEEecCCCEEEEEECC-----CcEEE
Q 006220 423 PVYSASFS-PLGDFILSSSA-D----TTIRLWSTKLN-ANLVC-YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARI 489 (656)
Q Consensus 423 ~V~~l~~s-pd~~~L~s~s~-D----g~I~lwd~~~~-~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~l 489 (656)
.+...+|| |||++|+.+.. + .+|+++|+.++ +.+.. +. ....+++|+|+|+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99998874433 2 35999999988 53211 11 113468899999888877765 36888
Q ss_pred EECCCCce--eEEec-CCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCC--ee-EEEE-ecCCCCeEEEEEcCCC
Q 006220 490 WSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSG--EC-VRIF-IGHRSMILSLAMSPDG 559 (656)
Q Consensus 490 wd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~--~~-~~~~-~~h~~~i~~l~~sp~g 559 (656)
+++.++.. ...+. ........+.|+|+|++|+..+. ...|+++|+.++ .. ++.+ ........++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 88877642 23333 22234567899999999887653 346888999875 23 1333 3344555666655444
Q ss_pred CEEEEEECC----CcEEEEeCCCCeeeEe-eeCCCc--cEEEEEEcCCCCEEEEEECCCc--EEEEeC
Q 006220 560 RYMASGDED----GTIMMWDLASGRCVTP-LMGHTS--CVWTLAYSCEGSLLASGSADCT--VKLWDV 618 (656)
Q Consensus 560 ~~L~s~~~d----g~I~iwD~~~~~~~~~-~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~--I~iWd~ 618 (656)
.+++....+ ..|..+|+.++..... +..|.. .+.++.+. .+.++++...+|. |.++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 444444433 3677778765322222 333433 45566665 3445666777776 445554
No 265
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00018 Score=77.20 Aligned_cols=235 Identities=10% Similarity=0.078 Sum_probs=139.4
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 353 ~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...+++|+|+ ...|.++...+.|+.++.... ....+........+++|+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------~v~~~~~~~~~P~giavd 190 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------YVDIKTTNIGQCADVNFT 190 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------EEEEECCCCSCEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------EEEEeecCCCCccEEEEC
Confidence 3568899984 334444433388988887531 122222334568899999
Q ss_pred cCCCEEEEEeCC---C-eEEEEeccCCce-eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEE-ec-
Q 006220 431 PLGDFILSSSAD---T-TIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRI-MA- 502 (656)
Q Consensus 431 pd~~~L~s~s~D---g-~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~- 502 (656)
++++++++.... . .+...+...+.. ...+. .......++++| +|.++++-..++.|+.++..++..... +.
T Consensus 191 ~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~ 269 (433)
T 4hw6_A 191 LNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM 269 (433)
T ss_dssp TTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC
T ss_pred CCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc
Confidence 999944444321 1 233333332211 01111 223346788999 676666666778899999886655222 22
Q ss_pred CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCee--EEEEecC---------------CCCeEEEEE-------
Q 006220 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIGH---------------RSMILSLAM------- 555 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~--~~~~--~~~~~~h---------------~~~i~~l~~------- 555 (656)
+....-..++|+|++++|+.+. ..+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 270 ~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 270 DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 2222234699999999666554 56789998865 3321 1223222 123567899
Q ss_pred --cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC------------------CccEEEEEEc-CCCCEEEEEECCCcEE
Q 006220 556 --SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH------------------TSCVWTLAYS-CEGSLLASGSADCTVK 614 (656)
Q Consensus 556 --sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h------------------~~~V~~l~~s-~~~~~l~sgs~Dg~I~ 614 (656)
.++|.+.++-...+.|+.++. .|.. ..+.+. -.....|+++ +++.++++-...+.|+
T Consensus 350 ~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 350 GEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp TSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred ccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 677777777667788999984 5643 333221 0236789999 5676666666677888
Q ss_pred EEeCC
Q 006220 615 LWDVT 619 (656)
Q Consensus 615 iWd~~ 619 (656)
.++++
T Consensus 428 ~i~~e 432 (433)
T 4hw6_A 428 KIAPE 432 (433)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 87753
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.00027 Score=73.53 Aligned_cols=210 Identities=7% Similarity=-0.065 Sum_probs=131.5
Q ss_pred eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
.........++|++.... .++-...+.|..+++..... ............+
T Consensus 69 ~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g 120 (349)
T 3v64_C 69 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG 120 (349)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------------EEEECSSCSCCCE
T ss_pred ecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----------------------------eEEEeCCCCCccE
Confidence 344456889999976554 45555678888888764211 0111111233467
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECC-CcEEEEECCCCceeEEecC
Q 006220 427 ASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHD-RTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 427 l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~D-g~i~lwd~~~~~~~~~~~~ 503 (656)
+++.+.+.. +++-...+.|.+.+++................++++.|.+..++.+ ... +.|..++++..........
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 888875554 4555667889999988554444343334456899999965555444 444 7888888876443333333
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.......++++|++..|+.+. ..+.|..+|+........+.........|++. .+..+++-...+.|..++..+|+.+
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 445678999998776666554 46789999987544333333334556778873 4555556556788888886677665
Q ss_pred Eeee
Q 006220 583 TPLM 586 (656)
Q Consensus 583 ~~~~ 586 (656)
..+.
T Consensus 280 ~~i~ 283 (349)
T 3v64_C 280 EIIR 283 (349)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5554
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.32 E-value=0.0011 Score=70.28 Aligned_cols=206 Identities=9% Similarity=-0.045 Sum_probs=134.0
Q ss_pred cCccCEEEEEEccCCCEEE-EEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEEC
Q 006220 419 GHSGPVYSASFSPLGDFIL-SSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSM 492 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~ 492 (656)
.....+..++|++.+..|+ +-...+.|+.+++... .....+.........+++.+. ++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 3456788999998666555 4456788999998752 223333333445778999884 555555556789999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG 569 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg 569 (656)
+.......+.........++++|.+.+|+.+.. .+.|...++............-.....|++++++..|+.+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 876655555555566889999997766666542 37899998865444333333345678999998877776664 467
Q ss_pred cEEEEeCCCCeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 570 TIMMWDLASGRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.|..+|+........... .-....++++. .+.++++-...+.|..+|..+++...
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 899999864433222222 22345677773 34556666667889999976665543
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.32 E-value=0.00055 Score=67.46 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=125.2
Q ss_pred eCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 349 NTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
+..+.+..++|+|++. +.|+...++.|...|... ... ....+.+ ....-.|
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v~--------------------------~~i~l~g-~~D~EGI 75 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DLI--------------------------RTIPLDF-VKDLETI 75 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CEE--------------------------EEEECSS-CSSEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CEE--------------------------EEEecCC-CCChHHe
Confidence 4456799999999865 455577778888777652 100 0111122 2456778
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCcee---EEee------CCCccEEEEEEecCCCEEEEEECCCcEEEEECC---CC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANL---VCYK------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD---RI 495 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~---~~~~------~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~---~~ 495 (656)
++.+++.++++.-.++.+.++++.....+ .... ..+.....++|+|.++.|+++.......+|.++ ..
T Consensus 76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 88888887777667788999988755432 2221 124456899999998887777765555555543 11
Q ss_pred ceeEEec-------CCCCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEEecCC---------CCeEEEEEcCC
Q 006220 496 QPLRIMA-------GHLSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSLAMSPD 558 (656)
Q Consensus 496 ~~~~~~~-------~~~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~~~h~---------~~i~~l~~sp~ 558 (656)
..+..+. .+...+.+++++|....+ +.+...+.+..+|.. |+.+..+.-.. ...-.|+|.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 2233321 234568899999966555 455566788899965 66665554322 25678999999
Q ss_pred CCEEEEEECCCcEEEEe
Q 006220 559 GRYMASGDEDGTIMMWD 575 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD 575 (656)
|++.++ ++-+.++.+.
T Consensus 235 G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 235 GNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCEEEE-ETTTEEEEEE
T ss_pred CCEEEE-cCCceEEEEE
Confidence 984444 6767666664
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=1.5e-05 Score=90.46 Aligned_cols=242 Identities=11% Similarity=0.041 Sum_probs=138.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 356 CASISQ-DGSLVAGGFSDS-----------SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 356 ~l~fs~-dg~~La~g~~dg-----------~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
++++.+ ++++++.|+.+. .+.+||..+..... .......+...
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-------------------------~~~~~~~~~~~ 244 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-------------------------RTVTVTKHDMF 244 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-------------------------CEEEECSCCCS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-------------------------CcccCCCCCCc
Confidence 556667 889998887543 46777765421110 01111123333
Q ss_pred EEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCc-cEEEEEEecCCCEEEEEE-CC-----CcEEEEECCCC
Q 006220 424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNPQGHYFASSS-HD-----RTARIWSMDRI 495 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~sgs-~D-----g~i~lwd~~~~ 495 (656)
..++++..+++.++.|+. ++.+.+||..+.+-...-..+.. .-.+++..+++..++.|+ .+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 445677889999998884 45899999886643322111111 113456667899999998 44 57899999876
Q ss_pred ceeEEe----cCCCCCeeEEEEcCCCCEEEEEECCC---------cEEEEeCCCCeeEEEEecCCC---------CeEEE
Q 006220 496 QPLRIM----AGHLSDVDCVRWHINCNYIATGSSDK---------TVRLWDVSSGECVRIFIGHRS---------MILSL 553 (656)
Q Consensus 496 ~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg---------~V~iwd~~~~~~~~~~~~h~~---------~i~~l 553 (656)
+-...- ......-....+..++..++.|+.+| .+..||..+.........+.. .-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 533320 00000000011224455555555443 567889887764433322211 23444
Q ss_pred EEcC-CCCEEEEEECCC-----------cEEEEeCCCCeeeEee--eCCCccE-EEEEEcCCCCEEEEEECC--------
Q 006220 554 AMSP-DGRYMASGDEDG-----------TIMMWDLASGRCVTPL--MGHTSCV-WTLAYSCEGSLLASGSAD-------- 610 (656)
Q Consensus 554 ~~sp-~g~~L~s~~~dg-----------~I~iwD~~~~~~~~~~--~~h~~~V-~~l~~s~~~~~l~sgs~D-------- 610 (656)
.|.. ++++++.|+.++ .|.+||..+....... ..+.... .+.+..+++++++.||.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4543 678888887543 6888888776543322 1122222 344567899999999864
Q ss_pred ---CcEEEEeCCCCC
Q 006220 611 ---CTVKLWDVTTST 622 (656)
Q Consensus 611 ---g~I~iWd~~~~~ 622 (656)
..+.+||..+.+
T Consensus 485 ~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred CcccceEEEcCCCCc
Confidence 468999987654
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.27 E-value=0.00017 Score=80.52 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=106.9
Q ss_pred EEEecCCCEEEEEEC--------------------C----CcEEEEECCCCceeEEecC--CCC-------CeeEEEEc-
Q 006220 469 VQFNPQGHYFASSSH--------------------D----RTARIWSMDRIQPLRIMAG--HLS-------DVDCVRWH- 514 (656)
Q Consensus 469 l~~sp~~~~l~sgs~--------------------D----g~i~lwd~~~~~~~~~~~~--~~~-------~V~~v~~~- 514 (656)
+++.|....++.++. | +.|..+|.++++.+-.+.. |.. ...-+...
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~ 330 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKA 330 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEEC
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeec
Confidence 466777777777663 2 5899999999998877652 311 11112222
Q ss_pred CCCC---EEEEEECCCcEEEEeCCCCeeEEEEecCC-------------CCe----------------------------
Q 006220 515 INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHR-------------SMI---------------------------- 550 (656)
Q Consensus 515 p~~~---~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-------------~~i---------------------------- 550 (656)
.+|+ .++.++.+|.++++|..+|+.+..+.... .++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4664 78889999999999999999887665331 000
Q ss_pred ----EEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCeeeEeeeCCCccEE
Q 006220 551 ----LSLAMSPDGRYMASGD---------------------------------EDGTIMMWDLASGRCVTPLMGHTSCVW 593 (656)
Q Consensus 551 ----~~l~~sp~g~~L~s~~---------------------------------~dg~I~iwD~~~~~~~~~~~~h~~~V~ 593 (656)
..++++|+...+++.. .+|.|.-||+.+|+.+-+..... ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 1346676655554432 25789999999999887665322 121
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 594 TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 594 ~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
+-.....+.+++.|+.||.++.||..+++.+.+...
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 111222466888899999999999999999877654
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.27 E-value=0.00011 Score=72.21 Aligned_cols=180 Identities=9% Similarity=0.033 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
...+.|+ ++.+..+.+.+|.|+++|+.+..... .. +.. .----.+++.. +
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------~~--l~~-~~FgeGit~~g-~ 106 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW-------------------------ME--RLG-NIFAEGLASDG-E 106 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE-------------------------EE--ECT-TCCEEEEEECS-S
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe-------------------------EE--CCC-CcceeEEEEeC-C
Confidence 5788887 46677777788999999987633211 11 111 11112244432 2
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-----CCe
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-----SDV 508 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-----~~V 508 (656)
+..++.-.++.+.+||..+.+.+..+.... .-|.+++ ++..|+.+..++.|.++|..+.+.+..+.... ..+
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 333445568899999999999998887532 3356664 57777777778999999999998887776321 234
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEEC
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+.+.|. +|...+..-.+..|.+.|.++|+.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 667776 6754444446789999999999998877531 135688999998766655553
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.26 E-value=4.3e-05 Score=86.88 Aligned_cols=153 Identities=10% Similarity=0.118 Sum_probs=105.9
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCc-cEEEEEEec--CCCEEEEEEC------CCcEEEEECCCCceeEEecC
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY-PVWDVQFNP--QGHYFASSSH------DRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-~V~~l~~sp--~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~ 503 (656)
+..++.++.|+.|..+|..+++.+..+..... ....+..+| .+..+++++. +|.|+.+|..+++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 46788888999999999999998877664211 000111111 1334555543 58999999999998876642
Q ss_pred C---C----------------------------CCeeEEEEcCCCCEEEEEECCC-------------------cEEEEe
Q 006220 504 H---L----------------------------SDVDCVRWHINCNYIATGSSDK-------------------TVRLWD 533 (656)
Q Consensus 504 ~---~----------------------------~~V~~v~~~p~~~~l~tgs~dg-------------------~V~iwd 533 (656)
. . .....+++.|....++.++.++ .|.-+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 0 0112468888888998888776 399999
Q ss_pred CCCCeeEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCCeeeEee
Q 006220 534 VSSGECVRIFIG--HR-------SMILSLAMSPDGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 534 ~~~~~~~~~~~~--h~-------~~i~~l~~sp~g~---~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
..+|+.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+...
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 999999988764 22 2333333444675 7889999999999999999988543
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.26 E-value=0.0008 Score=68.93 Aligned_cols=203 Identities=8% Similarity=-0.014 Sum_probs=130.4
Q ss_pred cCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCcee
Q 006220 422 GPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 422 ~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
..+.++.|++.+.. +++-...+.|..++....... ......-....++++.+. +..+++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 45678999986554 455566788999998865321 222222234567889874 445555556789999998865544
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEe
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWD 575 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD 575 (656)
..+.........++++|.+..|+.+.. .+.|...++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 444455567889999997666666552 57888888764333222223334568999999766666554 567899999
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+..........+......++++. .+.++++-...+.|..++..+++...
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceE
Confidence 86433222222233456778875 34455665567889999987766543
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.00038 Score=73.47 Aligned_cols=221 Identities=6% Similarity=-0.062 Sum_probs=138.0
Q ss_pred eeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
.........++|++.+. ++++-...+.|..+++..... .............
T Consensus 112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------------------------~~~~~~~~~~p~g 163 (386)
T 3v65_B 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------------------------EEVVSTGLESPGG 163 (386)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE----------------------------EEEECSSCSCCCC
T ss_pred ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc----------------------------EEEEeCCCCCccE
Confidence 34445688999997544 455555678888888764211 0111111223456
Q ss_pred EEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CC-CcEEEEECCCCceeEEecC
Q 006220 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD-RTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 427 l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~D-g~i~lwd~~~~~~~~~~~~ 503 (656)
+++.+.+..| ++-...+.|.+.+++.................+++.|.+..++.+. .. +.|..++++..........
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 7888755544 5555677899998875544444443445578999998766555554 44 6888888876554444444
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.......++|+|++..|+.+. ..+.|..+|+........+.........|++ ..+.++++-...+.|..+|..+|+.+
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 455678999998766666554 5678999998654433334333445677888 34556666667788988887777766
Q ss_pred EeeeCCCccEEEEEE
Q 006220 583 TPLMGHTSCVWTLAY 597 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~ 597 (656)
..+........++++
T Consensus 323 ~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 323 EIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEEECSCSCCCCEEE
T ss_pred EEEccCCCCCceEEE
Confidence 666543333344443
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0023 Score=67.68 Aligned_cols=226 Identities=8% Similarity=0.023 Sum_probs=142.4
Q ss_pred EeeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+......+..++|++.+.. .++-...+.|+.+++...... ...............
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------------------------~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD 162 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CCCEEEECSSCSCEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------------------------CcceEEEeCCCCCcc
Confidence 3445567899999986554 445556778888887631100 001111222334677
Q ss_pred EEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 006220 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~ 502 (656)
.+++.+.+. +.++-...+.|.+.+++.......+.........|++.|.+.+|+.... .+.|...+++.........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 889987544 4555566789999999865554444444445789999996666555542 4789999988665555555
Q ss_pred CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
........+++++.+..|+.+. ..+.|..+|+........... .......|++. .+.++++-...+.|..+|..+|
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 4556788999998777776664 467899999865443333332 22345567763 3455556667788999998788
Q ss_pred eeeEeeeCCCccEEEEEE
Q 006220 580 RCVTPLMGHTSCVWTLAY 597 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~ 597 (656)
+.+..+........++..
T Consensus 322 ~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp CCCEEEECSCSCEEEEEE
T ss_pred CceEEEecCCCCCceEEE
Confidence 777766544444555543
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.22 E-value=0.0005 Score=66.96 Aligned_cols=181 Identities=10% Similarity=0.016 Sum_probs=119.4
Q ss_pred CeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 353 GLNCASISQDGSLVAGGFSD--SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~d--g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
-...+.|++ +.+..+.+.. +.|+++|+.+...... ..+..+. ---.+++.
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~--------------------------~~l~~~~-fgeGi~~~ 73 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR--------------------------AEVPPPY-FGAGIVAW 73 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE--------------------------EECCTTC-CEEEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE--------------------------EeCCCCc-ceeEEEEe
Confidence 367889987 5555555554 5899999986332111 1111110 01123333
Q ss_pred cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC----
Q 006220 431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL---- 505 (656)
Q Consensus 431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~---- 505 (656)
++.| ...-.++.+.+||..+.+.+..+.... .-|.++ +++..|+.+..++.|.++|..+.+.++.+....
T Consensus 74 --~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 74 --RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp --TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 4444 445568899999999999998887543 335665 456666666678899999999998887776322
Q ss_pred -CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-------------CCCeEEEEEcCCCCEEEEEEC
Q 006220 506 -SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-------------RSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 506 -~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~L~s~~~ 567 (656)
..++.+.|. +|...+..-.+..|.+.|.++|+.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 245566665 6655544446789999999999998887521 124688999998877776664
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00055 Score=79.28 Aligned_cols=245 Identities=12% Similarity=0.048 Sum_probs=152.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|.++...++|. |.+|+.++-|..|+............ +.. .....-....|.++...
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~---------------~~~----~~~~~l~~~~v~~i~~d 371 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYS---------------PTQ----MNESSLSNKVVSSVCDD 371 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-------------------C----CCSSCCSSSCEEEEEEC
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccC---------------ccc----cccCCCCCcceEEEEEc
Confidence 34689999988887 55677777788888653211100000 000 00000123568999988
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--CCC
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--GHL 505 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~ 505 (656)
++|. |..|+.++-|..|+..++...... ......|+++...++|. |..|+.++-+..++..+++...... ...
T Consensus 372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 449 (781)
T 3v9f_A 372 GQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNEL 449 (781)
T ss_dssp TTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCC
T ss_pred CCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCC
Confidence 7776 555665566999987654321111 12345788998887776 4557776778999887664333221 134
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
..|.++...+++. |..|+. +-|..||..+++........ ...|.++...++|.+.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 6788998888775 555665 56889998877655433322 35789999998887554 4443447789987664
Q ss_pred eeEeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 581 CVTPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 581 ~~~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
.. .+.. ....|.++...++|.+.++. .+|.|..||..+..
T Consensus 527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp EE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred EE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 33 3321 23578999999998866654 46655888876654
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.18 E-value=0.0006 Score=69.25 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=122.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLR 499 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~ 499 (656)
....+++|+++++++++...++.|..||.... ....+. ......++++.++|+++++..... .|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56778999999997777778899999998753 333333 234678999999998666554332 46677777665443
Q ss_pred Eec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEec---------CCCCeEEEEEcCCCCEEEEE-EC
Q 006220 500 IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIG---------HRSMILSLAMSPDGRYMASG-DE 567 (656)
Q Consensus 500 ~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~---------h~~~i~~l~~sp~g~~L~s~-~~ 567 (656)
... ........++..+.+..+++...++.|+.+|..++.. +....+ .-.....| +|++++|+.+ ..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 322 1222334555555554445444688999999876532 211111 11234455 8888766655 45
Q ss_pred CCcEEEEeCCC-Cee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 568 DGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 568 dg~I~iwD~~~-~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.+.|..||+.. ++. ...+.. ......++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 67899999864 321 111111 1234568999999988877778899999875
No 279
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.14 E-value=0.00045 Score=77.05 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=101.7
Q ss_pred EEEEeCCCeEEEEeccCCceeEEeeCCCc----cEEE-EEEecCCCEEEEEE------CCCcEEEEECCCCceeEEecCC
Q 006220 436 ILSSSADTTIRLWSTKLNANLVCYKGHNY----PVWD-VQFNPQGHYFASSS------HDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~----~V~~-l~~sp~~~~l~sgs------~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
++.++.|+.|..+|..+++.+........ .+.+ -.+. ++ .+++++ .+|.|+.+|..+++.+-.+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 88888999999999999998876543220 1111 1111 34 455554 3799999999999988666532
Q ss_pred CCCe--------------------------------------eEEEEcCCCCEEEEEECCC----------------cEE
Q 006220 505 LSDV--------------------------------------DCVRWHINCNYIATGSSDK----------------TVR 530 (656)
Q Consensus 505 ~~~V--------------------------------------~~v~~~p~~~~l~tgs~dg----------------~V~ 530 (656)
.... ...++.+....++.++.++ .|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 1110 1345667778888877653 799
Q ss_pred EEeCCCCeeEEEEecCCC----------CeEEEEEc-CCC---CEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 531 LWDVSSGECVRIFIGHRS----------MILSLAMS-PDG---RYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 531 iwd~~~~~~~~~~~~h~~----------~i~~l~~s-p~g---~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
-+|..+|+.+..+..... ++. +... .+| ..++.++.+|.+.++|..+|+.+....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 999999999887764321 221 2222 567 577888999999999999999887654
No 280
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.14 E-value=0.00018 Score=80.03 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=116.5
Q ss_pred EEEccCCCEEEEEeCC----------------CeEEEEeccCCceeEEeeCC----------CccEEEEEEecCCC---E
Q 006220 427 ASFSPLGDFILSSSAD----------------TTIRLWSTKLNANLVCYKGH----------NYPVWDVQFNPQGH---Y 477 (656)
Q Consensus 427 l~~spd~~~L~s~s~D----------------g~I~lwd~~~~~~~~~~~~h----------~~~V~~l~~sp~~~---~ 477 (656)
+++.+....++.++.+ +.|..+|..+++.+..++.. ..++. +....+|. .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 4566665666655532 36999999999988777532 12222 22234673 5
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCCC-------------CCe--------------------------eEEEEcCCCC
Q 006220 478 FASSSHDRTARIWSMDRIQPLRIMAGHL-------------SDV--------------------------DCVRWHINCN 518 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-------------~~V--------------------------~~v~~~p~~~ 518 (656)
++.++.+|.++++|..+++.+..+.... .++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 7788899999999999998876554211 011 2357888877
Q ss_pred EEEEEE-------------------------------------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220 519 YIATGS-------------------------------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 519 ~l~tgs-------------------------------------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
.+++.+ .+|.|..||..+++.+..+... .++....+...+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence 777654 3478999999999988777533 22222233334667
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCcc-EEEEEEcCCCCEEEE
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSC-VWTLAYSCEGSLLAS 606 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s 606 (656)
++.++.||.|+.||.++|+.+.++...... -..+.+..+|+.++.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 888999999999999999999888643211 112335567764443
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.14 E-value=0.0012 Score=67.72 Aligned_cols=207 Identities=8% Similarity=0.033 Sum_probs=130.7
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 353 GLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
....++|++. +.+..+-...+.|..+++..... ........-....++++.+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---------------------------~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------VQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---------------------------CCEEEEECCSCCCEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---------------------------eEEEEcCCCCCccEEEEEc
Confidence 4678899985 55555656678888888764210 0011111223456788887
Q ss_pred CCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--CCCcEEEEECCCCceeEEecCCCCCe
Q 006220 432 LGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDRIQPLRIMAGHLSDV 508 (656)
Q Consensus 432 d~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~~~~~V 508 (656)
.+. ++++-...+.|.+++++.................+++.|.+..++.+. ..+.|...+++...............
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 555 445556678999999875443333333444568999999766655555 35788888887544433444444567
Q ss_pred eEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC
Q 006220 509 DCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG 587 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~ 587 (656)
+.++++|++..|+.+. ..+.|..+|+..........+.......+++. .+.++++-...+.|..+|..+|+....+..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 8999999766666554 56789999986443333333334556677775 345555655678899999888876655543
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.12 E-value=0.0042 Score=63.34 Aligned_cols=213 Identities=9% Similarity=0.045 Sum_probs=130.6
Q ss_pred eeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 348 INTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
...-.....++|++++. +.++-...+.|..+++..... . ..........-....+
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----------------------~-~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------------V-SSYDTVISRDIQAPDG 81 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCCE
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----------------------C-cccEEEEeCCCCCcCE
Confidence 33455688999998655 455555678898888764100 0 0000111112234568
Q ss_pred EEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-C-CcEEEEECCCCceeEEecC
Q 006220 427 ASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-D-RTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 427 l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-D-g~i~lwd~~~~~~~~~~~~ 503 (656)
+++.+.+..| ++-...+.|.+.+++................++++.|.+..++.+.. . +.|...+++..........
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~ 161 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC
Confidence 8888755544 55566789999998754443333333445689999996665555543 3 6888888875443333333
Q ss_pred CCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEe-c--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 504 HLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFI-G--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~-~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.......++++|++..|+.+. ..+.|..+|+.... .+.+. . .......|++. .+.++++-...+.|..+|..+|
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 445678999998777776655 55789999987433 33332 2 22345677775 3555666667788999998777
Q ss_pred eeeEeee
Q 006220 580 RCVTPLM 586 (656)
Q Consensus 580 ~~~~~~~ 586 (656)
+.+..+.
T Consensus 240 ~~~~~i~ 246 (316)
T 1ijq_A 240 SDVNLLA 246 (316)
T ss_dssp CCCEEEE
T ss_pred cceEEEe
Confidence 7665554
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.11 E-value=0.0063 Score=62.34 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=133.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-eecCccCEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS 428 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~ 428 (656)
....+.++.|.+++..+|+| ..|.| +...+....- ..... .......+.+|.
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW-------------------------~~~~~~~~~~~~~~~~i~ 86 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTW-------------------------EPRTLVLDHSDYRFNSVS 86 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSC-------------------------EECCCCCSCCCCEEEEEE
T ss_pred CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCC-------------------------eECCCCCCCCCccEEEEE
Confidence 34579999998888888866 56755 2332221100 00000 011234678888
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCC
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGH 504 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~ 504 (656)
|++ +. ++.++..+.|.. ..+.++.-.... .+...+..+.+.+++..++++ .+|.|.. ..+.++.-.. ..+.
T Consensus 87 ~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 87 FQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA 161 (327)
T ss_dssp EET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC
T ss_pred ecC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC
Confidence 876 44 444455665544 333343333222 233457788887777666555 4565432 3333433322 2345
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~--~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
...+..+++.+++.+++++...+..+-+|- .+.+.+. ......+..+.+.+++..++ ++.+|.+++++...|+.-
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCee
Confidence 567889999999888877654444444442 2333332 34456788999999987654 456788877743334433
Q ss_pred EeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 583 ~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..+.. +...+.++.+.+++.+++++ .+|.| .+..+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ 280 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc
Confidence 33321 22458899999888766655 46766 45555443
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.0013 Score=75.97 Aligned_cols=249 Identities=11% Similarity=0.029 Sum_probs=151.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|.++...++|. |.+|+..+-|.+++............ ....+..... ...-....|.++...
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~--------~f~~~~~~~~------~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQI--------RFEFIREGDN------NYSLSNASARYIFQD 321 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------------CEEECBCSS------TTSBSSSCEEEEEEC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecc--------ccccccCCCC------CCCCCCCeEEEEEEe
Confidence 35699999888876 45566656688888764211100000 0000000000 001134679999998
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEee----------CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYK----------GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
++|. |..|+.++-|..|+..+..... +. .....|.++...++|. +..|+.++-+..|+..+......
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC
T ss_pred CCCC-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc
Confidence 8776 5667766779999887544322 21 0235688998887775 55677666788998765432211
Q ss_pred e---cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 501 M---AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 501 ~---~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
. ......|.++...++++ |.+|+.++-|..+|..+++...... .....|.++...++|.+. .|+. +-|..||
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~ 475 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVID 475 (781)
T ss_dssp -----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEE
T ss_pred cCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEe
Confidence 1 12345688888887775 5557777789999988776543321 134579999988887644 4555 5588999
Q ss_pred CCCCeeeEeeeCC-----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 576 LASGRCVTPLMGH-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 576 ~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
..+++........ ...|.++...++|.+.+. +.++-|..||..+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ 525 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC
Confidence 8776543322222 367999999998886654 44344777887654
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.06 E-value=0.0027 Score=65.12 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=111.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC--CCCcee
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPL 498 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~--~~~~~~ 498 (656)
+.++.+.+.+++..++++ .+|.|.. ..+.+..-.. .......+..+.+.+++.+++++...+..+-+|- .+-+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 446777777766655555 4564432 2232333222 2344567889999998887776644333333342 122222
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-c---CCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G---HRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~---h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
-......+..+.+.+++..+ +++.+|.+++++...|..-..+. . +...+.++.+.+++..++++ .+|.| ++
T Consensus 200 --~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~ 274 (327)
T 2xbg_A 200 --NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LC 274 (327)
T ss_dssp --ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EE
T ss_pred --CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EE
Confidence 23455678899999988755 45567888777433243322222 1 22358899999887766665 46766 45
Q ss_pred eCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 575 DLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 575 D~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
....|+.-..+. .+...+.++.|.+++ .+++++.+|.|.-++-
T Consensus 275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 555555444443 233567888887554 5667778998776653
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=0.0016 Score=70.30 Aligned_cols=242 Identities=10% Similarity=0.038 Sum_probs=142.2
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec----CccCEEE
Q 006220 353 GLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----HSGPVYS 426 (656)
Q Consensus 353 ~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~ 426 (656)
....++|+|. ++++++-...+.|++.|+.... +..+.. .......
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------------------------v~~l~~~~~~~~~~p~~ 190 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------------------------LSSPLNINTIPTNRIRS 190 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------------------------EEEEECCTTSSCSBEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------------------------EEEEEccCccccCCCcE
Confidence 4678899983 4555555445668888876421 111111 1235789
Q ss_pred EEE-------ccCCCEEEEEeCCC-------eEEEEeccC-Ccee-----EEeeCCCccEEEEEEecC-CCEEEEEECCC
Q 006220 427 ASF-------SPLGDFILSSSADT-------TIRLWSTKL-NANL-----VCYKGHNYPVWDVQFNPQ-GHYFASSSHDR 485 (656)
Q Consensus 427 l~~-------spd~~~L~s~s~Dg-------~I~lwd~~~-~~~~-----~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg 485 (656)
++| ++++++|+++...+ .|.+++... +... ..+.... ....++++|+ +.++++-..++
T Consensus 191 ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 191 IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT
T ss_pred EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC
Confidence 999 99999776665543 266665333 1111 1222112 3457889994 55555666788
Q ss_pred cEEEEECC-------CCce-----------e-EEec-CCCCCeeEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCee--E
Q 006220 486 TARIWSMD-------RIQP-----------L-RIMA-GHLSDVDCVRWHINCNYIATG-SSDKTVRLWDV--SSGEC--V 540 (656)
Q Consensus 486 ~i~lwd~~-------~~~~-----------~-~~~~-~~~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~--~~~~~--~ 540 (656)
.|+.+|++ ++.. . ..+. +.......++|+|++++|+.+ +..+.|+.+|. .++.. .
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 89999987 4432 1 1122 223446789999999965555 45678888654 33332 1
Q ss_pred EEEecC---C------------CCeE-EEEEc-------CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC---------
Q 006220 541 RIFIGH---R------------SMIL-SLAMS-------PDGRYMASGDEDGTIMMWDLASGRCVTPLMGH--------- 588 (656)
Q Consensus 541 ~~~~~h---~------------~~i~-~l~~s-------p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h--------- 588 (656)
..+.+. . .... .++.. ++|.++++=...++|+.++ .+|. +.++-+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence 333332 1 1233 34444 4566666666778899998 4563 4444321
Q ss_pred -----C----------ccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceee
Q 006220 589 -----T----------SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 589 -----~----------~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
. .....|+++++ +.++++=.....|+.+++........
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 0 23678999997 76666666778899999987665543
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.00 E-value=7.6e-05 Score=84.72 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=128.8
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 355 NCASISQDGSLVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
.++++..+++++++|+. ++.+.+||.......... .+... ..-.++...+++
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~--------------------------~~~~~-R~~~s~~~~~dg 298 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP--------------------------DMQVA-RGYQSSATMSDG 298 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC--------------------------CCSSC-CSSCEEEECTTS
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC--------------------------CCCcc-ccccceEEecCC
Confidence 35778899999999974 557999997642211100 00000 011234455688
Q ss_pred CEEEEEe-CC-----CeEEEEeccCCceeEEeeCC-CccE----EEEEEecCCCEEEEEECCC---------cEEEEECC
Q 006220 434 DFILSSS-AD-----TTIRLWSTKLNANLVCYKGH-NYPV----WDVQFNPQGHYFASSSHDR---------TARIWSMD 493 (656)
Q Consensus 434 ~~L~s~s-~D-----g~I~lwd~~~~~~~~~~~~h-~~~V----~~l~~sp~~~~l~sgs~Dg---------~i~lwd~~ 493 (656)
+.++.|+ .+ ..+.+||..+.+-... ... ..+. ....+..++..++.|+.+| .+..||..
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 9888888 34 5699999886643322 100 0000 0011223455556665444 46788887
Q ss_pred CCceeEEecCCC---------CCeeEEEEcC-CCCEEEEEECCC-----------cEEEEeCCCCeeEEEE--ecCCCC-
Q 006220 494 RIQPLRIMAGHL---------SDVDCVRWHI-NCNYIATGSSDK-----------TVRLWDVSSGECVRIF--IGHRSM- 549 (656)
Q Consensus 494 ~~~~~~~~~~~~---------~~V~~v~~~p-~~~~l~tgs~dg-----------~V~iwd~~~~~~~~~~--~~h~~~- 549 (656)
+.........+. ..-.++.|.. +++.+++|+.++ .|.+||..+....... ..+...
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 665433322221 1223444543 677788887543 6888898877655433 112222
Q ss_pred eEEEEEcCCCCEEEEEECC-----------CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 550 ILSLAMSPDGRYMASGDED-----------GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~d-----------g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
-.+++..|+|++++.|+.+ ..+.+||..+.+-.. .+........+..+.++|++++.||.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2455677899999998854 468999987765322 12212222234556789999999985
No 288
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.96 E-value=0.00051 Score=76.58 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=116.5
Q ss_pred EEEEccCCCEEEEEeC--------------------C----CeEEEEeccCCceeEEeeC--CC--------ccEEEEEE
Q 006220 426 SASFSPLGDFILSSSA--------------------D----TTIRLWSTKLNANLVCYKG--HN--------YPVWDVQF 471 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~--------------------D----g~I~lwd~~~~~~~~~~~~--h~--------~~V~~l~~ 471 (656)
.+++.|....++.++. | +.|..+|..+++.+-.++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567777777766553 2 6899999999999887753 21 1221 122
Q ss_pred e-cCCC---EEEEEECCCcEEEEECCCCceeEEecCCC-------------CC---------------------------
Q 006220 472 N-PQGH---YFASSSHDRTARIWSMDRIQPLRIMAGHL-------------SD--------------------------- 507 (656)
Q Consensus 472 s-p~~~---~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-------------~~--------------------------- 507 (656)
. .+|. .++.++.+|.++++|.++++.+..+.... .+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 1 3563 78889999999999999988876554221 00
Q ss_pred -----eeEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCeeEEEEecCCCC
Q 006220 508 -----VDCVRWHINCNYIATGS---------------------------------SDKTVRLWDVSSGECVRIFIGHRSM 549 (656)
Q Consensus 508 -----V~~v~~~p~~~~l~tgs---------------------------------~dg~V~iwd~~~~~~~~~~~~h~~~ 549 (656)
-..++++|+...+++.. .+|.|.-||+.+|+.+....... +
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence 01346666655555433 25789999999999887765432 2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE-EEEEEcCCCCEE
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV-WTLAYSCEGSLL 604 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V-~~l~~s~~~~~l 604 (656)
+..-.....+.+++.|+.||.++.||.++|+.+.++....+.+ .-+.|..+|+..
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 2221222246788889999999999999999998887543221 125566677643
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0022 Score=65.72 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=124.9
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC----CCE--EEEEE--C--CCcEEEEECC-CCceeEE
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHY--FASSS--H--DRTARIWSMD-RIQPLRI 500 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~--l~sgs--~--Dg~i~lwd~~-~~~~~~~ 500 (656)
...+++.....+-+.+||+ +++.+..+.. +.+..+..-|. |.. ++.++ . +++|.+|+++ ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456777777889999999 6888887764 45666766652 222 33333 4 5799999874 2234555
Q ss_pred ecC------CC-CCeeEEEE--cCC-CC-EEEEEECCCcEEEEeCC-------CCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 501 MAG------HL-SDVDCVRW--HIN-CN-YIATGSSDKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 501 ~~~------~~-~~V~~v~~--~p~-~~-~l~tgs~dg~V~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
+.. .. ..+..+++ +|. +. |+++...+|.+..|++. +++.++.|... +.+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence 522 11 45666777 664 43 68888889999999983 34667887753 568888899988999
Q ss_pred EEEECCCcEEEEeCC-----CCeeeEeee-CC-CccEEEEEE--cCCCC-EEEEEE-CCCcEEEEeCC
Q 006220 563 ASGDEDGTIMMWDLA-----SGRCVTPLM-GH-TSCVWTLAY--SCEGS-LLASGS-ADCTVKLWDVT 619 (656)
Q Consensus 563 ~s~~~dg~I~iwD~~-----~~~~~~~~~-~h-~~~V~~l~~--s~~~~-~l~sgs-~Dg~I~iWd~~ 619 (656)
+.+-++.-|..+|.. +++.+..+. ++ ...+..|++ .++++ +|++++ .+++..+||..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998777666754 345565542 22 246788887 45555 566555 67899999997
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.92 E-value=0.0086 Score=68.84 Aligned_cols=206 Identities=8% Similarity=-0.070 Sum_probs=130.3
Q ss_pred cCccCEEEEEEccCCCE-EEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEEC
Q 006220 419 GHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSM 492 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~ 492 (656)
.....+.+++|++.+.. +++-...+.|+.+++... .....+.........|++.+.+.. +++-...+.|.+.++
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 34566789999985554 455556788999998752 223333323445668999887654 455556789999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-C-CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDG 569 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg 569 (656)
+.......+.........|+++|.+.+|+.+.. . +.|...++........+...-.....|++.+.+..|+.+. ..+
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 876555555555567899999998666666543 2 6798888865444444443445788999998776666654 456
Q ss_pred cEEEEeCCCCeeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 570 TIMMWDLASGRCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
.|...++........+... -....+|++.. +.++++-...+.|...+..++....
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceE
Confidence 8999998544333333321 23345677643 3444444456778888876665443
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.00084 Score=71.88 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=99.6
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC----cEEEEECCCCc
Q 006220 423 PVYSASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg----~i~lwd~~~~~ 496 (656)
....++|+| ++..|+.+...+.|+.+|+.++...... ........++|+++|++++++.. ++ .+..++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889998 4566666665588999999865543333 34455789999999996666654 22 23334432211
Q ss_pred e-eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEE-ECCCcEE
Q 006220 497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASG-DEDGTIM 572 (656)
Q Consensus 497 ~-~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~-~~dg~I~ 572 (656)
. ...+. .......++++| ++..+++-..++.|+.||..++.....+.. .......|+|+|+|++|+.+ ...+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 12222 234567889999 676666666778999999987765333322 22356789999999955554 4677899
Q ss_pred EEeCC
Q 006220 573 MWDLA 577 (656)
Q Consensus 573 iwD~~ 577 (656)
.++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98765
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0019 Score=65.56 Aligned_cols=195 Identities=9% Similarity=0.083 Sum_probs=126.1
Q ss_pred EEEEEccCCCEEEEEe-CCCeEEEEeccCCceeEEeeCC-------CccEEEEEE---ecCCCEEEEEE-----------
Q 006220 425 YSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQF---NPQGHYFASSS----------- 482 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~---sp~~~~l~sgs----------- 482 (656)
-++.|.+....|+.++ ..++|..|+...+......-.. ...+.++.| .|++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4678988655555555 7899999999755443332211 124689999 68877777544
Q ss_pred --CCCcEEEEECC---CCceeEEecC-------------CCCCeeEEEEcCCCCEEEEEECC-CcEEEEeCCCCeeEEEE
Q 006220 483 --HDRTARIWSMD---RIQPLRIMAG-------------HLSDVDCVRWHINCNYIATGSSD-KTVRLWDVSSGECVRIF 543 (656)
Q Consensus 483 --~Dg~i~lwd~~---~~~~~~~~~~-------------~~~~V~~v~~~p~~~~l~tgs~d-g~V~iwd~~~~~~~~~~ 543 (656)
.++.+..||+. +++.+....- -......++..++|+..++++.. +.|..++.... .+..+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence 26789999998 7777655441 11247889999999999999988 88888886543 33333
Q ss_pred ecC------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee-eEeee--CC---CccEEEE-EEcCCCCE-EEEEEC
Q 006220 544 IGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC-VTPLM--GH---TSCVWTL-AYSCEGSL-LASGSA 609 (656)
Q Consensus 544 ~~h------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~-~~~~~--~h---~~~V~~l-~~s~~~~~-l~sgs~ 609 (656)
... ....+.|+++|+|+.|++....|.+.-+|+.+... ..... +. -.....+ ..-.+|+. |++.+.
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 211 12367899999999988887799999999874322 01111 21 1223343 33346777 555556
Q ss_pred CCcEEEEeCCC
Q 006220 610 DCTVKLWDVTT 620 (656)
Q Consensus 610 Dg~I~iWd~~~ 620 (656)
.+.+.+.+-..
T Consensus 255 ~~~~~l~S~Dg 265 (334)
T 2p9w_A 255 PYAISFRSWDN 265 (334)
T ss_dssp TEEEEEECSST
T ss_pred CCEEEEECCCC
Confidence 66555555443
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0013 Score=70.52 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=119.2
Q ss_pred CEEEEEEccC--CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC---Cc-EEEEECCCCc
Q 006220 423 PVYSASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---RT-ARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~spd--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D---g~-i~lwd~~~~~ 496 (656)
...+++|+|+ +..|+.+...+.|+.++..++...... .......+++|+++|+++++.... .. +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 445555555488999999766554433 344457899999999944443321 12 2333322211
Q ss_pred e-eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCCcE
Q 006220 497 P-LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIF-IG-HRSMILSLAMSPDGRYMASGD-EDGTI 571 (656)
Q Consensus 497 ~-~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~-h~~~i~~l~~sp~g~~L~s~~-~dg~I 571 (656)
. ...+. .......++++| ++...++-..++.|+.+|..++.....+ .. ....-..|+|+|+|++|+.+. ..+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 11222 234566788999 6666666656788999999877763322 22 122335699999999665554 56789
Q ss_pred EEEeCC--CCee--eEeeeCC---------------CccEEEEEE---------cCCCCEEEEEECCCcEEEEeC
Q 006220 572 MMWDLA--SGRC--VTPLMGH---------------TSCVWTLAY---------SCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 572 ~iwD~~--~~~~--~~~~~~h---------------~~~V~~l~~---------s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
+.++.. ++.. ...+.+. -.....+++ .++|.++++-...+.|+.++.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 998865 2321 1111111 123577999 777777777777788998884
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.0081 Score=69.07 Aligned_cols=214 Identities=9% Similarity=0.036 Sum_probs=131.8
Q ss_pred EeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+......+..++|++.. .++++-...+.|+.+++...... ......+........
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~------------------------~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------------------SSYDTVISRDIQAPD 474 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCCC
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC------------------------cceeEEEecCCCCcc
Confidence 34445567889998854 44555555677888887641100 001112222334556
Q ss_pred EEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEec
Q 006220 426 SASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 426 ~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|++.+.++.| ++-...+.|.+.+++.......+.........|++.|.+.+|+.+.. .+.|...+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 78888777544 55566789999999855544444444455789999997655555543 3688889988766555555
Q ss_pred CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
........|++++.+..|+.+. ..+.|..+++............ -.....|++.. +.++++-...+.|...|..+|
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 5556789999998777776654 4568999998655444444332 22345666642 234444446678888887777
Q ss_pred eeeEee
Q 006220 580 RCVTPL 585 (656)
Q Consensus 580 ~~~~~~ 585 (656)
+.+..+
T Consensus 634 ~~~~~l 639 (791)
T 3m0c_C 634 SDVNLL 639 (791)
T ss_dssp CCCEEE
T ss_pred cceEEe
Confidence 655544
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.0062 Score=62.37 Aligned_cols=193 Identities=14% Similarity=0.248 Sum_probs=122.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC----CC---
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL----GD--- 434 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----~~--- 434 (656)
..+++++....+-+.+||+.. +....+.. +.+..+..-|. |+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G-----------------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~d 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG-----------------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVD 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS-----------------------------CEEEEECC--SCEEEEEEEEEEEETTEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCC-----------------------------cEEEEccC--CCcccEEEecccccCCceEe
Confidence 455555556778899999953 12222221 44555555442 22
Q ss_pred E-EEEEeC--CCeEEEEeccC-CceeEEeeC------CC-ccEEEEEE--ecC-CC-EEEEEECCCcEEEEECC------
Q 006220 435 F-ILSSSA--DTTIRLWSTKL-NANLVCYKG------HN-YPVWDVQF--NPQ-GH-YFASSSHDRTARIWSMD------ 493 (656)
Q Consensus 435 ~-L~s~s~--Dg~I~lwd~~~-~~~~~~~~~------h~-~~V~~l~~--sp~-~~-~l~sgs~Dg~i~lwd~~------ 493 (656)
+ +++.-. +++|++|+++. ...+..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++.
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence 2 233334 57899997742 223443321 11 45667887 664 43 67888889999999883
Q ss_pred -CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----CCeeEEEEe-cC-CCCeEEEEE--cCCCC-EE
Q 006220 494 -RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----SGECVRIFI-GH-RSMILSLAM--SPDGR-YM 562 (656)
Q Consensus 494 -~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-----~~~~~~~~~-~h-~~~i~~l~~--sp~g~-~L 562 (656)
+.+.++.+... +.+..|...+....|+.+-.+.-|..+|.. +++.+..+. ++ ...+..|++ .++|+ +|
T Consensus 168 ~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 168 ISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 33556777643 578888999988999999999778778855 345555442 22 236788887 45555 66
Q ss_pred EEEE-CCCcEEEEeCC-CCeeeEeee
Q 006220 563 ASGD-EDGTIMMWDLA-SGRCVTPLM 586 (656)
Q Consensus 563 ~s~~-~dg~I~iwD~~-~~~~~~~~~ 586 (656)
++++ .+++..+||.. +.+.+..+.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 6655 67799999996 667777664
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.77 E-value=0.0064 Score=63.04 Aligned_cols=229 Identities=10% Similarity=0.130 Sum_probs=124.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
-..-..++|.|||+++++ ..+|.|.+++ .. ..... . ..............++|+
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~~-~----------------------~~~v~~~g~~~p~gia~~ 83 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLSTY-A----------------------ELSVYHRGESGLLGLALH 83 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEEE-E----------------------ECCCCCSTTCSEEEEEEC
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccEe-e----------------------cceEeecCCCCceeEEEC
Confidence 445789999999996665 4679999988 32 10000 0 000111223567899999
Q ss_pred cC---CCEEEEEeC-C-----CeEEEEeccCCc-----eeE-Eee---CCCccEEEEEEecCCCEEEEEEC---------
Q 006220 431 PL---GDFILSSSA-D-----TTIRLWSTKLNA-----NLV-CYK---GHNYPVWDVQFNPQGHYFASSSH--------- 483 (656)
Q Consensus 431 pd---~~~L~s~s~-D-----g~I~lwd~~~~~-----~~~-~~~---~h~~~V~~l~~sp~~~~l~sgs~--------- 483 (656)
|+ +..|+.+.. . +.|..|+...+. .+. .+. +.......++|.|+|.++++.+.
T Consensus 84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d 163 (352)
T 2ism_A 84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQD 163 (352)
T ss_dssp TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGC
T ss_pred CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccC
Confidence 98 555554433 2 568888876431 111 132 11123468999999976666432
Q ss_pred ----CCcEEEEECCCC-------------ceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcE------EEEeCCCCe-
Q 006220 484 ----DRTARIWSMDRI-------------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTV------RLWDVSSGE- 538 (656)
Q Consensus 484 ----Dg~i~lwd~~~~-------------~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V------~iwd~~~~~- 538 (656)
.|.|.-++.+.. .......++ .....++|+| ++..+++-.....+ .+.-+..+.
T Consensus 164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~n 242 (352)
T 2ism_A 164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGN 242 (352)
T ss_dssp TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCB
T ss_pred CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCc
Confidence 145666665431 111112233 3366789999 66655543332221 122222221
Q ss_pred -----------------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee------eEeeeCCCccEEEE
Q 006220 539 -----------------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC------VTPLMGHTSCVWTL 595 (656)
Q Consensus 539 -----------------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~------~~~~~~h~~~V~~l 595 (656)
++..+. +......++| .+|.++++....+.|...++..... ...+..-...+..+
T Consensus 243 yGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 320 (352)
T 2ism_A 243 YGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREV 320 (352)
T ss_dssp CCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEE
T ss_pred CCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEE
Confidence 222232 2234566777 4676666666667787777653321 12222223578899
Q ss_pred EEcCCCCEEEEEE
Q 006220 596 AYSCEGSLLASGS 608 (656)
Q Consensus 596 ~~s~~~~~l~sgs 608 (656)
++.|||.++++..
T Consensus 321 ~~~pdG~lyv~~~ 333 (352)
T 2ism_A 321 QVGPDGALYVTTS 333 (352)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998777654
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.69 E-value=0.025 Score=58.54 Aligned_cols=230 Identities=10% Similarity=0.060 Sum_probs=127.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.-..-..++|.|||+++++ ..+|.|++++-.. . .... ..............|+|
T Consensus 27 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G--~-~~~~----------------------~~~v~~~g~~g~~gia~ 80 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG--K-KLVA----------------------SFDVANVGEAGLLGLAL 80 (354)
T ss_dssp SCSCEEEEEEEETTEEEEE-ETTTEEEEECSSC--E-EEEE----------------------ECCCCCSTTCSEEEEEE
T ss_pred CCCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC--c-eEee----------------------ccceeecCCCceeeEEe
Confidence 3456789999999986655 4669998886321 1 0000 00001112345789999
Q ss_pred ccC---CCEEEEEeC----C----CeEEEEeccCCc-------ee-EEeeC-CCccEEEEEEecCCCEEEEEEC------
Q 006220 430 SPL---GDFILSSSA----D----TTIRLWSTKLNA-------NL-VCYKG-HNYPVWDVQFNPQGHYFASSSH------ 483 (656)
Q Consensus 430 spd---~~~L~s~s~----D----g~I~lwd~~~~~-------~~-~~~~~-h~~~V~~l~~sp~~~~l~sgs~------ 483 (656)
+|+ +..|+.+.. + +.|..|+..... .+ ..+.. .......+.|.|+|.++++.+.
T Consensus 81 ~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 81 HPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL 160 (354)
T ss_dssp CTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred CCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence 997 555544432 3 567777766431 11 11221 1123467999999987766442
Q ss_pred -------CCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcC-CCCEEEEEECCC---cEEEEeCCCCe------
Q 006220 484 -------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDK---TVRLWDVSSGE------ 538 (656)
Q Consensus 484 -------Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg---~V~iwd~~~~~------ 538 (656)
.|.|.-++.+.. .......++ .....++|+| +++.+++-.... .|.+.. .+.
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~ 237 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL 237 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence 245555555432 111122244 3456899999 566554432221 233322 111
Q ss_pred ------------eEEEEecCCCCeEEEEEc-------CCCCEEEEEECCCcEEEEeCCCC-eee--Eeee-CCCccEEEE
Q 006220 539 ------------CVRIFIGHRSMILSLAMS-------PDGRYMASGDEDGTIMMWDLASG-RCV--TPLM-GHTSCVWTL 595 (656)
Q Consensus 539 ------------~~~~~~~h~~~i~~l~~s-------p~g~~L~s~~~dg~I~iwD~~~~-~~~--~~~~-~h~~~V~~l 595 (656)
++..+.........++|. .+|.++++....+.|...++... ... ..+. +-...+..+
T Consensus 238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 222231122356778883 46777777767788888888753 222 2232 224578999
Q ss_pred EEcCCCCEEEEEE
Q 006220 596 AYSCEGSLLASGS 608 (656)
Q Consensus 596 ~~s~~~~~l~sgs 608 (656)
++.|||.++++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998777664
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.00031 Score=80.14 Aligned_cols=205 Identities=8% Similarity=-0.060 Sum_probs=121.1
Q ss_pred cCEEEEEEccCCCEEEEE-eCCCeEEEEeccC----CceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220 422 GPVYSASFSPLGDFILSS-SADTTIRLWSTKL----NANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
..+.+++|++.+..|+.+ ...+.|+.+++.. ......+.........|++.+. ++++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678999877666554 4567899999875 2222222211223456788754 444555456788999998866
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE-EECCCcEE
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS-GDEDGTIM 572 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s-~~~dg~I~ 572 (656)
.....+.........++++|.+.+|+.+.. .+.|..+++............-.....|+|+|++..|+. -+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544444444456788999997665555442 267888877543222222222344667999997655554 44667899
Q ss_pred EEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 573 MWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 573 iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+|+........+. ..-....+|++..+ .++++....+.|..++..+++....+
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 99986432222221 11122345566543 45555556788999998776654433
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.64 E-value=0.055 Score=60.61 Aligned_cols=200 Identities=8% Similarity=-0.053 Sum_probs=131.4
Q ss_pred cCEEEEEEccCCCEEE-EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE-EEEECCCcEEEEECCCCceeE
Q 006220 422 GPVYSASFSPLGDFIL-SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
..+.+++|++.+..|+ +-..++.|..++++.......+........++++.+.+..| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4578999998766555 55567899999987554433333322346688998765544 554567889999987665444
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~ 576 (656)
.+.........++++|...+|+.+.. .+.|...++......... ..-.....|+++++++.|+.+. ..+.|..+|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 44455566889999996666666542 567888887654433333 3456778999999877666654 5678999998
Q ss_pred CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
..... ..+...-....++++.. +.++++-...+.|...|..++...
T Consensus 196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 65433 23333333456788764 445555555788988887766543
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.59 E-value=0.019 Score=64.24 Aligned_cols=203 Identities=8% Similarity=-0.023 Sum_probs=125.0
Q ss_pred ccCEEEEEEccCCCEEEEE-eCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCce
Q 006220 421 SGPVYSASFSPLGDFILSS-SADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~-s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~ 497 (656)
-..+..++|++.+..|+.+ ...+.|..++++.... ...+...-....++++.+.+.. +++-...+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 3457899999877666544 4567899999875432 2233333346789999985554 45555678999999987654
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEE
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMW 574 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iw 574 (656)
...+.........++++|.+.+|+.+.. .+.|...++............-.....|+++++++.|+.+ ...+.|...
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 4444455567889999997666666553 3567777765433333333344567899999976666555 456789999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|+..........+......++++..+ .++++-...+.|...|..+++..
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 98654332222211222346677655 44454456678999998776543
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.58 E-value=0.033 Score=56.46 Aligned_cols=205 Identities=8% Similarity=0.042 Sum_probs=126.5
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec------
Q 006220 347 FINTHNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG------ 419 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 419 (656)
+....----|++|.+....|..+ ...|.|..|+........ . .+.+
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------------------~-~~~~~s~~g~ 60 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------------------V-VIDGASSNGD 60 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------------------E-CCTTTCCSSC
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------------------E-ecCCccccCC
Confidence 33333345688998755555555 479999999976321110 0 0100
Q ss_pred CccCEEEEEE---ccCCCEEEEEe-------------CCCeEEEEecc---CCceeEEeeC-------------CCccEE
Q 006220 420 HSGPVYSASF---SPLGDFILSSS-------------ADTTIRLWSTK---LNANLVCYKG-------------HNYPVW 467 (656)
Q Consensus 420 h~~~V~~l~~---spd~~~L~s~s-------------~Dg~I~lwd~~---~~~~~~~~~~-------------h~~~V~ 467 (656)
....+.++.| .|+++++++.. .+..|..+|+. +++.+....- -.....
T Consensus 61 ~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 61 GEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp CSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred CcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 0113478999 68877766543 26789999999 7777655431 112478
Q ss_pred EEEEecCCCEEEEEECC-CcEEEEECCCCceeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--
Q 006220 468 DVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-- 539 (656)
Q Consensus 468 ~l~~sp~~~~l~sgs~D-g~i~lwd~~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-- 539 (656)
+++..++|+..++++.. +.|...+.+......... ......+.|+++|+|+.|++....|.+..+|+.+...
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~ 220 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWP 220 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCC
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCccee
Confidence 99999999999999988 888777776542221211 1122367999999999998887799999999885333
Q ss_pred EEEEe-cC---CCCeEEE-EEcCCCCE-EEEEECCCcEEEEeCCC
Q 006220 540 VRIFI-GH---RSMILSL-AMSPDGRY-MASGDEDGTIMMWDLAS 578 (656)
Q Consensus 540 ~~~~~-~h---~~~i~~l-~~sp~g~~-L~s~~~dg~I~iwD~~~ 578 (656)
+..-. +. -.....| ..-.+|+. |++....+.+.+.+...
T Consensus 221 v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 221 EPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 22110 21 1223343 33346777 45555566666666543
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.54 E-value=0.019 Score=64.30 Aligned_cols=205 Identities=9% Similarity=0.022 Sum_probs=123.7
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
-+....++|++.+..|... ...+.|..+++.... ..............++++
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~---------------------------~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE---------------------------SVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------CEEEECSSCSCEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC---------------------------ceEEEEeCCCCCcCeEEE
Confidence 4457899999866655544 456778888876410 001112222246788999
Q ss_pred ccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--CCcEEEEECCCCceeEEecCCCC
Q 006220 430 SPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH--DRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 430 spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
.+.+..| ++-...+.|.+.+++...........-....+|++.|.+.+++.+.. .+.|...+++.............
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~ 171 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 171 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence 9866644 55566789999999855443333334445678999997655555543 46777777776554444444556
Q ss_pred CeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 507 DVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
....+++++.+..|+.+. ..+.|..+|+..........+.......|++..+ ..+++-...+.|...|..+++...
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 688999998766666554 5678999998654433322212222345677655 444444566789988987775443
No 303
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.54 E-value=0.032 Score=57.76 Aligned_cols=240 Identities=11% Similarity=0.098 Sum_probs=128.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
..-..++|.|||+ +++ +...|.|++++...... ..... .........+....++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~-~~~~~---------------------~~~v~~~g~~g~~gia~~ 74 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLS-APLSG---------------------VPDVWAHGQGGLLDVVLA 74 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEEC-CCCBS---------------------CCCCCCSTTCSEEEEEEC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCcee-eEecC---------------------CcccccCCCCCceeEEEC
Confidence 4578999999999 555 45789998887432100 00000 000111223456889999
Q ss_pred cC---CCEEEEEe-C-------CCeEEEEeccCCc----ee-EEeeC------CCccEEEEEEecCCCEEEEEEC-----
Q 006220 431 PL---GDFILSSS-A-------DTTIRLWSTKLNA----NL-VCYKG------HNYPVWDVQFNPQGHYFASSSH----- 483 (656)
Q Consensus 431 pd---~~~L~s~s-~-------Dg~I~lwd~~~~~----~~-~~~~~------h~~~V~~l~~sp~~~~l~sgs~----- 483 (656)
|+ +..|+.+. . ...|..|+..... .. ..+.. .......+.|.|+|.++++.+.
T Consensus 75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~ 154 (353)
T 2g8s_A 75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP 154 (353)
T ss_dssp TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG
T ss_pred CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC
Confidence 96 45444332 2 2356666664321 11 11111 1122457999999966555443
Q ss_pred --------CCcEEEEECCCCc------------eeEEe-cCCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCC---
Q 006220 484 --------DRTARIWSMDRIQ------------PLRIM-AGHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSG--- 537 (656)
Q Consensus 484 --------Dg~i~lwd~~~~~------------~~~~~-~~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~--- 537 (656)
.|.|.-++.+..- ....+ .++ .....++|+|....|+++... +.=.|.-+..+
T Consensus 155 ~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny 233 (353)
T 2g8s_A 155 TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY 233 (353)
T ss_dssp GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC
T ss_pred ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC
Confidence 2456666765420 11222 234 346789999943344444322 11222222111
Q ss_pred ----------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeee
Q 006220 538 ----------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 538 ----------------------------~~~~~~~~h~~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.++..+. +......++|.. +|.++++....+.|...++..++.+
T Consensus 234 Gwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 234 GWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT 312 (353)
T ss_dssp CTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence 1112222 223566788864 4777777777788888888766544
Q ss_pred Ee--e-eCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220 583 TP--L-MGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDV 618 (656)
Q Consensus 583 ~~--~-~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~ 618 (656)
.. + ......+..+++.|||.++++.. .+| +||.+
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 32 2 12235789999999998766543 334 44543
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.50 E-value=0.00035 Score=79.71 Aligned_cols=222 Identities=9% Similarity=0.022 Sum_probs=126.6
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 351 HNGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
...+..++|++.+..|... ...+.|+.+++....... .....+.........|++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------------------------~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------------------------SYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------------------------CCCCBCCSCC--CCCEEC
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------------------------ceEEEEeCCCCCcceEEE
Confidence 3456788998876655544 456788888876410000 000000011122345777
Q ss_pred ccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-C-CCcEEEEECCCCceeEEecCCCC
Q 006220 430 SPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-H-DRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 430 spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~-Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
.+.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+. . .+.|..++++.......+.....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 75444 445545678899999875544333333334457889998655554443 2 26788888765443333333345
Q ss_pred CeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 507 DVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
....|+|+|++..|+.+ +..+.|..+|+........+.. .......|++..+ .++++....+.|..+|..+|+.+.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 57789999876555544 4567899999864333222221 1123345566543 455555667899999988888777
Q ss_pred eeeCCCccEEEEEE
Q 006220 584 PLMGHTSCVWTLAY 597 (656)
Q Consensus 584 ~~~~h~~~V~~l~~ 597 (656)
.+.......++|++
T Consensus 620 ~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 620 LLAENLLSPEDMVL 633 (699)
T ss_dssp CCCTTCSSCCCCCB
T ss_pred EeecCCCCCcEEEE
Confidence 76543333444544
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.49 E-value=0.0056 Score=61.54 Aligned_cols=183 Identities=10% Similarity=0.073 Sum_probs=97.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCc---eeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCc
Q 006220 432 LGDFILSSSAD-----TTIRLWSTKLNA---NLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ 496 (656)
Q Consensus 432 d~~~L~s~s~D-----g~I~lwd~~~~~---~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~ 496 (656)
++..++.|+.+ ..+.+||..+.. -... +.........+.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 46666777654 468899988765 2221 1111111112222 56777777644 358888987765
Q ss_pred eeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCCEEEEEEC
Q 006220 497 PLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 497 ~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~~L~s~~~ 567 (656)
-...-. .......++. .++..++.|+.+ ..+.+||+.+.+-...-..... ...++.+ ++++++.|+.
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~ 215 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF 215 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence 333221 1111122222 266677777654 4689999987755433111111 1122222 5677777765
Q ss_pred C-----CcEEEEeCCCCeeeEe--eeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220 568 D-----GTIMMWDLASGRCVTP--LMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST 622 (656)
Q Consensus 568 d-----g~I~iwD~~~~~~~~~--~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~ 622 (656)
+ ..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||+.+.+
T Consensus 216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4 4689999987653322 2211111222222 67777887765 357888887654
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.40 E-value=0.027 Score=58.13 Aligned_cols=207 Identities=13% Similarity=0.177 Sum_probs=120.2
Q ss_pred CCeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe--
Q 006220 352 NGLNCASISQDGSLVAGGF------------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY-- 417 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~------------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 417 (656)
.+.-.+.+.|+|..+++++ .+|.|.++|..+.... .......
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~------------------------~~~l~~~g~ 105 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA------------------------VSELEIIGN 105 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC------------------------EEECEEECS
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc------------------------eEEEEccCC
Confidence 3556667788876555541 6899999997642110 0111110
Q ss_pred --ecCccCEEEEEEcc--CCC-EEEEE-eC--CCeEEEEeccCCce----eEEeeCC-CccEEEEEEecCCCEEEEEEC-
Q 006220 418 --QGHSGPVYSASFSP--LGD-FILSS-SA--DTTIRLWSTKLNAN----LVCYKGH-NYPVWDVQFNPQGHYFASSSH- 483 (656)
Q Consensus 418 --~~h~~~V~~l~~sp--d~~-~L~s~-s~--Dg~I~lwd~~~~~~----~~~~~~h-~~~V~~l~~sp~~~~l~sgs~- 483 (656)
.........+.+.+ ++. +|+.+ .. +.+|.+|+++.... +..+.+. -...+++.+.++|.+.++...
T Consensus 106 ~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ 185 (355)
T 3sre_A 106 TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY 185 (355)
T ss_dssp SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS
T ss_pred CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE
Confidence 11233556666655 343 34443 22 56888988775432 2233332 235789999999987776541
Q ss_pred ----------------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--EEEE
Q 006220 484 ----------------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSS-GEC--VRIF 543 (656)
Q Consensus 484 ----------------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~-~~~--~~~~ 543 (656)
.|.++.+|. ++ ++.+.......+.++|+|+++.|+.+. ..+.|+.|++.. +.. .+.+
T Consensus 186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 186 FIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred eCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 234444444 33 333333445678999999998887765 568899999863 332 2344
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEECC-CcEEEEeCC--CCeeeEeee
Q 006220 544 IGHRSMILSLAMSP-DGRYMASGDED-GTIMMWDLA--SGRCVTPLM 586 (656)
Q Consensus 544 ~~h~~~i~~l~~sp-~g~~L~s~~~d-g~I~iwD~~--~~~~~~~~~ 586 (656)
...+....+++.+ +|++.+++..+ +.|..||-. .+..+.++.
T Consensus 263 -~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp -ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred -eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 2345677899999 59887766644 345545433 244555544
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.31 E-value=0.23 Score=55.45 Aligned_cols=208 Identities=11% Similarity=0.021 Sum_probs=127.1
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-ee--cCccCEEEE
Q 006220 352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQ--GHSGPVYSA 427 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~--~h~~~V~~l 427 (656)
..+..++|.+....|... ...+.|+.+++....... .... .. .....+.++
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~-------------------------v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT-------------------------VVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------EEC--------CCCEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE-------------------------EEEcccccccccCCcceE
Confidence 457788888765555444 346677777765311000 0000 00 123467899
Q ss_pred EEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCC--cEEEEECCCCceeEEecC
Q 006220 428 SFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR--TARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 428 ~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg--~i~lwd~~~~~~~~~~~~ 503 (656)
++...++.| ++-+..+.|.+.+++.......+........+|++.| .|.++++-.... .|...+++..........
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~ 474 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFS 474 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECS
T ss_pred EeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEec
Confidence 999887755 4666778999999874322233333445678999999 565555543333 577777776555445554
Q ss_pred CCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 504 HLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.....+.+++.+.+..|+.+.. .+.|...|+.. ...+.+. ........|++.. +..+++=...+.|...|..+|+.
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 5567889999998777776654 57899999854 3344443 3334566777754 44444544567788888777765
Q ss_pred eEeee
Q 006220 582 VTPLM 586 (656)
Q Consensus 582 ~~~~~ 586 (656)
...+.
T Consensus 553 ~~~i~ 557 (628)
T 4a0p_A 553 RTKVQ 557 (628)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 55444
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.31 E-value=0.014 Score=58.56 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=95.6
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCceeE
Q 006220 432 LGDFILSSSAD-----TTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPLR 499 (656)
Q Consensus 432 d~~~L~s~s~D-----g~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~~ 499 (656)
++..++.|+.+ ..+.+||..+.+-...- ....... +++. -++..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 46666777654 35888888765432221 1111111 1222 2577777787553 47788887654333
Q ss_pred Eec--CCCCCeeEEEEcCCCCEEEEEECC-------CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEECC
Q 006220 500 IMA--GHLSDVDCVRWHINCNYIATGSSD-------KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 500 ~~~--~~~~~V~~v~~~p~~~~l~tgs~d-------g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.-. .......++. -++..++.|+.+ ..+.+||+.+..-...-. .......++.+ ++++++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 214 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD 214 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence 211 1111112222 255666666542 458899998775443211 11111122222 56777777654
Q ss_pred -----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCC
Q 006220 569 -----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTST 622 (656)
Q Consensus 569 -----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iWd~~~~~ 622 (656)
..+.+||+.+.+-.. .+.........+. .++.+++.|+.++ .+.+||+.+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 468999988764322 2211111111222 2677788887653 48889987754
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.025 Score=61.06 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=116.1
Q ss_pred CEEEEEEccC-CCEEEEEe-CCCeEEEEeccCCceeEEeeCC---CccEEEEEE-------ecCCCEEEEEECCC-----
Q 006220 423 PVYSASFSPL-GDFILSSS-ADTTIRLWSTKLNANLVCYKGH---NYPVWDVQF-------NPQGHYFASSSHDR----- 485 (656)
Q Consensus 423 ~V~~l~~spd-~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~-------sp~~~~l~sgs~Dg----- 485 (656)
....|+|+|. +..|+.+. ..+.|++.|..++......... ......++| +++|.+++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 55455444 4467888998876554443321 234789999 99999777766543
Q ss_pred --cEEEEECCC-Ccee-----EEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC-------CCee----------
Q 006220 486 --TARIWSMDR-IQPL-----RIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS-------SGEC---------- 539 (656)
Q Consensus 486 --~i~lwd~~~-~~~~-----~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~-------~~~~---------- 539 (656)
.+.+++... +... ..+.. ......++.+|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 256665433 1111 22221 224567888995 4545556677889999987 5543
Q ss_pred -EEE-Ee-cCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeC--CCCeee--EeeeCC---C------------ccEE-EE
Q 006220 540 -VRI-FI-GHRSMILSLAMSPDGRYMASG-DEDGTIMMWDL--ASGRCV--TPLMGH---T------------SCVW-TL 595 (656)
Q Consensus 540 -~~~-~~-~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~--~~~~~~--~~~~~h---~------------~~V~-~l 595 (656)
... +. +.......|+|+|+|++|+.+ +..+.|+.+|. ..+... ..+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 22 223456789999999965555 45678888654 333210 112111 0 1234 45
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEe
Q 006220 596 AYS-------CEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 596 ~~s-------~~~~~l~sgs~Dg~I~iWd 617 (656)
+.. .++.++++=.....|+.++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe
Confidence 554 4566677666778899988
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.23 E-value=0.027 Score=56.65 Aligned_cols=185 Identities=8% Similarity=0.035 Sum_probs=97.8
Q ss_pred CCCEEEEEeCC----CeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 006220 432 LGDFILSSSAD----TTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR 499 (656)
Q Consensus 432 d~~~L~s~s~D----g~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~~ 499 (656)
++..++.|+.+ ..+.+||..+.+-...- .........+.+ ++..++.|+.+ ..+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45666777654 56888998766432221 111111112222 67777777765 468889988765333
Q ss_pred EecCCC--CCeeEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEEC
Q 006220 500 IMAGHL--SDVDCVRWHINCNYIATGSS---------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 500 ~~~~~~--~~V~~v~~~p~~~~l~tgs~---------dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~~ 567 (656)
.-.... ....++. -++..++.|+. -..+.+||..+..-...-...... -.+++.. ++++++.|+.
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence 211111 1112222 25666666653 345889999887544321111111 1122222 5677777664
Q ss_pred C-----CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220 568 D-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK 623 (656)
Q Consensus 568 d-----g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~ 623 (656)
+ ..+.+||+.+.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 3 46889998876432 222211112222333 67788888754 4688899877653
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.22 E-value=0.25 Score=50.71 Aligned_cols=239 Identities=14% Similarity=0.110 Sum_probs=129.4
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+...-..-+.++|.|||+++++--..|.|++++......... .. .-.......+...
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v-~~---------------------~~~v~~~g~~Gll 83 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTEL-GE---------------------VPGVSPSGEGGLL 83 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EE---------------------CTTCCCBTTBSEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeee-cc---------------------cCceeecCCCCce
Confidence 3444456789999999999877765489998887432111000 00 0001123346788
Q ss_pred EEEEccC---CCEEEEE---eCCCeEEEEeccCC----------ceeE-Eee-CCCccEEEEEEecCCCEEEEEEC----
Q 006220 426 SASFSPL---GDFILSS---SADTTIRLWSTKLN----------ANLV-CYK-GHNYPVWDVQFNPQGHYFASSSH---- 483 (656)
Q Consensus 426 ~l~~spd---~~~L~s~---s~Dg~I~lwd~~~~----------~~~~-~~~-~h~~~V~~l~~sp~~~~l~sgs~---- 483 (656)
.|+++|+ +..|+.+ ..++.|.-|....+ +.+. .+. ........|.|.|+|.++++.+.
T Consensus 84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~ 163 (347)
T 3das_A 84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT 163 (347)
T ss_dssp EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence 9999995 3444432 23455666665541 1111 121 11223457999999987777542
Q ss_pred ---------CCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCe-------
Q 006220 484 ---------DRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGE------- 538 (656)
Q Consensus 484 ---------Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~------- 538 (656)
.|.|.-.+.+.. .....-.+|. ....++|+|+|.+.++-. .++.-.|--+..|.
T Consensus 164 ~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 164 GLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp GGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred ccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence 345555554432 1111222553 456889999876655432 23322332222221
Q ss_pred -----------eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee----EeeeCCCccEEEEEEcCCCCE
Q 006220 539 -----------CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV----TPLMGHTSCVWTLAYSCEGSL 603 (656)
Q Consensus 539 -----------~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~----~~~~~h~~~V~~l~~s~~~~~ 603 (656)
++..+..+......|+|. +|..+...-..+.|....+..+..+ ..+.+..+.+..++..|||.+
T Consensus 243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~l 321 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKL 321 (347)
T ss_dssp CSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEE
T ss_pred cCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcE
Confidence 122333222345667776 4566665555667766676554321 223334467899999999877
Q ss_pred EEEEE
Q 006220 604 LASGS 608 (656)
Q Consensus 604 l~sgs 608 (656)
+++.+
T Consensus 322 yv~td 326 (347)
T 3das_A 322 WLVTS 326 (347)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66654
No 312
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.19 E-value=0.28 Score=52.50 Aligned_cols=112 Identities=11% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
-...++++|.|||+++++-...+.|++++.......... .... ........+....|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~-~~~~-------------------~~~~~~g~~Gllgia~~ 85 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF-QVPE-------------------IVNDADGQNGLLGFAFH 85 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECTT-------------------CCCCTTSSCSEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEe-cCCc-------------------cccccCCCCceeEEEEC
Confidence 346789999999998777643346877764321110000 0000 00000124567899999
Q ss_pred cC---CCEEEEEeC-------------CCeEEEEeccCC-------ceeE-Eee-CCCccEEEEEEecCCCEEEEEE
Q 006220 431 PL---GDFILSSSA-------------DTTIRLWSTKLN-------ANLV-CYK-GHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 431 pd---~~~L~s~s~-------------Dg~I~lwd~~~~-------~~~~-~~~-~h~~~V~~l~~sp~~~~l~sgs 482 (656)
|+ +..|+.+.. ...|.-|+.... +.+. .+. ........|.|.|+|.++++.+
T Consensus 86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 96 555544332 234555655432 1111 122 1123468899999998777755
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.19 E-value=0.24 Score=49.93 Aligned_cols=234 Identities=11% Similarity=0.160 Sum_probs=149.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE
Q 006220 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (656)
Q Consensus 357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L 436 (656)
.-.+|..+.+|.-. ...++|+|+.... ...... ....|.-=.|-.+. .|
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~----------------------------klks~~-~~e~VvfWkWis~~-~L 120 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHT-MTDDVTFWKWISLN-TV 120 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTE----------------------------EEEEEE-CSSCEEEEEECSSS-EE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhh----------------------------hhccee-cCCccEEEEecCCC-eE
Confidence 33478888777764 6789999998621 222222 23567777776443 44
Q ss_pred EEEeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecCC
Q 006220 437 LSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+-.+. ..|+-|++... .+...+..| ...|..-..+++.++++..| -.|.+.+|+.+.. ..+.+.||
T Consensus 121 ~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 121 ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp EEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred EEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee
Confidence 44443 47999999753 445555544 34576777788888776654 2378889998864 55667777
Q ss_pred CCCeeEEEEc--CC-CCEEEEEEC---CCcEEEEeCCCC---e------eEEEEecC---CCCeEEEEEcCCCCEEEEEE
Q 006220 505 LSDVDCVRWH--IN-CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 505 ~~~V~~v~~~--p~-~~~l~tgs~---dg~V~iwd~~~~---~------~~~~~~~h---~~~i~~l~~sp~g~~L~s~~ 566 (656)
......+... +. .+.++.+.. .+.+++.++... . .+..+... ..-..+|..|+....++.-+
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT 278 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 278 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe
Confidence 5433333222 11 123333332 258899988432 1 12222222 23456788898888999999
Q ss_pred CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.-|.|.+||+.+|.++..-+-...+|..-+-+....=++.....|.|.--.++...-
T Consensus 279 K~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred CCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 999999999999999988776667776666655555566667888887777766544
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.056 Score=55.78 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=111.6
Q ss_pred CEEEEEEccCCCEEEEEe------------CCCeEEEEeccCC--ce-eEEeeC-----CCccEEEEEEec--CCC-EEE
Q 006220 423 PVYSASFSPLGDFILSSS------------ADTTIRLWSTKLN--AN-LVCYKG-----HNYPVWDVQFNP--QGH-YFA 479 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s------------~Dg~I~lwd~~~~--~~-~~~~~~-----h~~~V~~l~~sp--~~~-~l~ 479 (656)
..-.+...|+|..+++++ .+|.|.++|.++. +. ...+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344566788776655552 6899999998742 21 112222 223567787766 343 454
Q ss_pred EEE-C--CCcEEEEECCCCce----eEEecC-CCCCeeEEEEcCCCCEEEEEEC-----------------CCcEEEEeC
Q 006220 480 SSS-H--DRTARIWSMDRIQP----LRIMAG-HLSDVDCVRWHINCNYIATGSS-----------------DKTVRLWDV 534 (656)
Q Consensus 480 sgs-~--Dg~i~lwd~~~~~~----~~~~~~-~~~~V~~v~~~p~~~~l~tgs~-----------------dg~V~iwd~ 534 (656)
++. . +.++.+|+++.... +..+.+ .....+.+.+.++|.+.++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 443 3 46788887764322 223332 2345788999999987776541 245555554
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cee--eEeeeCCCccEEEEEEcC-CCCEEEEEEC
Q 006220 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLAS-GRC--VTPLMGHTSCVWTLAYSC-EGSLLASGSA 609 (656)
Q Consensus 535 ~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~-~~~--~~~~~~h~~~V~~l~~s~-~~~~l~sgs~ 609 (656)
++.. .....-...+.|+||||++.|+.+. ..+.|..||+.. +.. ...+ ...+..-.+++.+ +|++.+++..
T Consensus 211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 3332 2222334578899999998877765 568899999863 322 1122 2245678899999 5998887764
Q ss_pred C
Q 006220 610 D 610 (656)
Q Consensus 610 D 610 (656)
+
T Consensus 287 ~ 287 (355)
T 3sre_A 287 N 287 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.05 E-value=0.41 Score=50.14 Aligned_cols=235 Identities=12% Similarity=0.165 Sum_probs=152.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220 356 CASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (656)
Q Consensus 356 ~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~ 435 (656)
+.-.+|..+.+|.-. ...++|+|+.... ......- ...|.-=.|-.+ +.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~----------------------------klks~~~-~e~VvfWkWis~-~~ 118 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKS----------------------------KMKAHTM-TDDVTFWKWISL-NT 118 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTE----------------------------EEEEEEC-SSCCCEEEEEET-TE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhh----------------------------hhcceec-CCCceEEEecCC-Ce
Confidence 344567777777764 6789999998521 2222222 235656667543 34
Q ss_pred EEEEeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecC
Q 006220 436 ILSSSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
|+-.+ +..|+-|++... .+...+..| ...|..-..+++.++++..| -.|.+.+|+.+.. ..+.+.|
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG 196 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG 196 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC
T ss_pred EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee
Confidence 44444 357999999743 445555544 34577777888888876554 2478899998864 4566778
Q ss_pred CCCCeeEEEEcCC---CCEEEEEEC---CCcEEEEeCCCC---e------eEEEEecC---CCCeEEEEEcCCCCEEEEE
Q 006220 504 HLSDVDCVRWHIN---CNYIATGSS---DKTVRLWDVSSG---E------CVRIFIGH---RSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 504 ~~~~V~~v~~~p~---~~~l~tgs~---dg~V~iwd~~~~---~------~~~~~~~h---~~~i~~l~~sp~g~~L~s~ 565 (656)
|......+...-+ .+.++.+.. .+.+++.++... . .+..+... ..--.++..|+....++.-
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 8554444433211 123444443 278999988532 1 11111111 2345678899988899999
Q ss_pred ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+.-|.|.+||+.++.++..-+-...+|..-+-+....-++.....|.|.--.+....-
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 9999999999999999988776667776666666656677777888888777776544
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.00 E-value=0.55 Score=53.63 Aligned_cols=232 Identities=11% Similarity=0.090 Sum_probs=134.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
.+.|+|+.-..+|. |-.|+.+| +..||-.... .. .. . .......|.++.-.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~--~~-~~---------------~---------~~~~~~~i~~i~~d 71 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ--QH-FT---------------Y---------GENNNTRIYCGVII 71 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE--EC-SC---------------T---------TSTTSSCEEEEEEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE--EE-Ec---------------c---------CCCCCceEEEEEEc
Confidence 56799999888875 55677777 4456522100 00 00 0 00123468888777
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec----CCCC
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA----GHLS 506 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~----~~~~ 506 (656)
.++ .|..|+.+| +..||..+.............|.++.. .+| .+..|+.+ -+..+|..+.+...... ....
T Consensus 72 ~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~ 146 (758)
T 3ott_A 72 DNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN 146 (758)
T ss_dssp TTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred CCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence 655 566666655 889998765322111112234777654 344 56667765 58888987654332211 1234
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.|.++....++...+ |+.+ -+..+|..++......... ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus 147 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 578888777776544 5554 5778888776543321111 124888888877775555554 4588889877653
Q ss_pred eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
..........|.++....+|.+.+. +. +-+.+++..+.
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTS
T ss_pred EeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCC
Confidence 3211112346888888888876654 44 45778887654
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.053 Score=54.78 Aligned_cols=187 Identities=7% Similarity=0.025 Sum_probs=93.8
Q ss_pred cCCCEEEEEeC----C-------CeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEECC--------CcEEE
Q 006220 431 PLGDFILSSSA----D-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSHD--------RTARI 489 (656)
Q Consensus 431 pd~~~L~s~s~----D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~D--------g~i~l 489 (656)
.++..++.|+. + ..+..||..+.+-.. +..-..+- .+++.. ++..++.|+.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence 46677777763 1 126778877654321 11111111 112222 56667777632 45888
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-C-----CcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCCE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-D-----KTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGRY 561 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-d-----g~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~~ 561 (656)
||..+.+-...-..........+...++..++.|+. + ..+.+||..+.+-...-..... ...++.+ ++++
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 199 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRI 199 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEE
Confidence 998775432211111111111111235666677765 2 4689999987654332111111 1122222 5777
Q ss_pred EEEEECCC-----cEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCC--------------cEEEEeCCC
Q 006220 562 MASGDEDG-----TIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADC--------------TVKLWDVTT 620 (656)
Q Consensus 562 L~s~~~dg-----~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--------------~I~iWd~~~ 620 (656)
++.|+.++ .+.+||+.+.+-.. .+.........+.+ ++.+++.|+.++ .|.+||+.+
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred EEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence 77777654 58889987764322 22111112222222 567778777642 367888877
Q ss_pred CCc
Q 006220 621 STK 623 (656)
Q Consensus 621 ~~~ 623 (656)
.+-
T Consensus 278 ~~W 280 (315)
T 4asc_A 278 KKW 280 (315)
T ss_dssp TEE
T ss_pred Chh
Confidence 643
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.84 E-value=0.22 Score=51.22 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=104.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee--EEee---CCCccEEEEEEecC---CCEEEEEE-CC-----CcE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCYK---GHNYPVWDVQFNPQ---GHYFASSS-HD-----RTA 487 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~~---~h~~~V~~l~~sp~---~~~l~sgs-~D-----g~i 487 (656)
....+++|.|+|+++++ ..+|.|++++ ++... ..+. ........|+|+|+ +..|+++. .. +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34578999999985554 5669999998 34321 1111 12345789999998 44554443 22 578
Q ss_pred EEEECCCCc-----ee-EEec---CCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC--------
Q 006220 488 RIWSMDRIQ-----PL-RIMA---GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG-------- 537 (656)
Q Consensus 488 ~lwd~~~~~-----~~-~~~~---~~~~~V~~v~~~p~~~~l~tgs~-------------dg~V~iwd~~~~-------- 537 (656)
..|+..... .+ ..+. +.......++|.|+|...++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 11 1122 11123468999999976655332 145666665420
Q ss_pred -----eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCc--------EEEEeCCCCe------------------eeEee
Q 006220 538 -----ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGT--------IMMWDLASGR------------------CVTPL 585 (656)
Q Consensus 538 -----~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~--------I~iwD~~~~~------------------~~~~~ 585 (656)
.....-.++. ....++|+| +|.++++-...+. |.+.. .+. ++..+
T Consensus 188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence 1111112332 256789999 6665555333332 33332 221 22233
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.+......++| .+|.++++.-..+.|...++...
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 22234567777 46666666556667777776543
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.093 Score=54.84 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=96.1
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCC----CccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----------
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---------- 496 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---------- 496 (656)
.+|..++.+- ++.||.-++......+.++.. -..|..+..+|+|.++|..+. ..|.|..+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 4555555554 367888888755444444432 226788999999999998865 678888876221
Q ss_pred --eeEEecC------CCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCC--eeEEEEe---------cCCCCeEEEE
Q 006220 497 --PLRIMAG------HLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSG--ECVRIFI---------GHRSMILSLA 554 (656)
Q Consensus 497 --~~~~~~~------~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~---------~h~~~i~~l~ 554 (656)
..+.+.- ...+|..+.||| ++..|++-..|++||+||+... ++. .+. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1123321 246799999999 4568999999999999999853 222 222 1225688999
Q ss_pred EcCCCCEEEEEE--CCCcEEEE
Q 006220 555 MSPDGRYMASGD--EDGTIMMW 574 (656)
Q Consensus 555 ~sp~g~~L~s~~--~dg~I~iw 574 (656)
|.++|-.|...+ ..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77877643
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.73 E-value=0.044 Score=55.23 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCEEEEEeC----C-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 006220 432 LGDFILSSSA----D-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRI 495 (656)
Q Consensus 432 d~~~L~s~s~----D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~ 495 (656)
++..++.|+. + ..+.+||..+.+-... +.........+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4556666654 2 3578888876542221 1111111112222 56777777643 45788888765
Q ss_pred ceeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 006220 496 QPLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 496 ~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
+-...-. .......++.+ ++..++.|+.+ ..+.+||+.+.+-...-. .......++.+ ++++++.|+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence 4332211 11111222222 56666777654 468999988765433211 11111222223 567777776
Q ss_pred CC-----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220 567 ED-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST 622 (656)
Q Consensus 567 ~d-----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~ 622 (656)
.+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||+.+.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 54 569999988764332 22111111122222 56777777754 357788887654
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.60 E-value=0.12 Score=49.08 Aligned_cols=177 Identities=12% Similarity=0.034 Sum_probs=100.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCce------eEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee------E
Q 006220 433 GDFILSSSADTTIRLWSTKLNAN------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL------R 499 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~------~ 499 (656)
...|++...| +|+.=....+.. ...+-. -=..+.+++|+|+|.+.++ .+|.++-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666777 666555443331 122211 1246779999999987776 6777666665442211 1
Q ss_pred Ee-cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-------EEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220 500 IM-AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 500 ~~-~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-------~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I 571 (656)
.+ ..--....++.|.|+|.+.++ .||.|+-++-.+... ..+-.+--..+..|.|.|+|.+.+.. |+.+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 11 111122578999999987777 569998888643211 11111111467999999999877666 7775
Q ss_pred EEEeCCCCe------eeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 572 MMWDLASGR------CVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 572 ~iwD~~~~~------~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.-+.-.++. ....+- .....-..+.|++++.+.++. +| ++|....
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 444333221 011111 222344557799999877766 66 4555433
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.59 E-value=0.058 Score=53.92 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=90.9
Q ss_pred CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCc---eeEEec--CCCCCeeE
Q 006220 443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQ---PLRIMA--GHLSDVDC 510 (656)
Q Consensus 443 g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~---~~~~~~--~~~~~V~~ 510 (656)
..+.+||..+.+-... +....... +++ .-++..++.|+.+ ..+.+||..+.+ -...-. .......+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 3688888876542221 11111111 122 2356777777755 468899988765 332211 11111222
Q ss_pred EEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 006220 511 VRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGR 580 (656)
Q Consensus 511 v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD~~~~~ 580 (656)
+.+ ++..++.|+.+ ..+.+||..+.+-...-..........+..-++++++.|+.+ ..+.+||+.+.+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 222 56666777643 368899988775443322111111111112267777777654 458899987764
Q ss_pred eeEe--eeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220 581 CVTP--LMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK 623 (656)
Q Consensus 581 ~~~~--~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~ 623 (656)
-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 3322 2111111122222 56777777764 4688999887643
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.57 E-value=0.24 Score=49.87 Aligned_cols=176 Identities=10% Similarity=0.076 Sum_probs=104.3
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE----CCCcEE
Q 006220 427 ASFSPLGDFILSSSAD--------------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----HDRTAR 488 (656)
Q Consensus 427 l~~spd~~~L~s~s~D--------------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs----~Dg~i~ 488 (656)
--+++++.+|+-+... ..|+..+++......... . + +..|++++..|+-.. ....|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888766543 467777877654333222 1 2 236778888888765 344666
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
..+++.....+... +.. .+|+++++.|+-.+. ...|...++..+...+.+. +... ..++|++++|+-...
T Consensus 133 ~~~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred EEECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence 66777555444433 322 345678888876654 6789888987776655543 2222 346699998887664
Q ss_pred C--CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 006220 568 D--GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA--DCTVKLWDVTTS 621 (656)
Q Consensus 568 d--g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~--Dg~I~iWd~~~~ 621 (656)
. ..|..-++..+. ...+.. ..+ ..|+|++..|.-++. .+.|..-++...
T Consensus 204 ~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 204 NRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4 356666665443 333322 233 236777887776532 345666566543
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.55 E-value=0.29 Score=51.21 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred CcEEEEECCCCceeEEecCC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe------------eEEEEec---
Q 006220 485 RTARIWSMDRIQPLRIMAGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE------------CVRIFIG--- 545 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~------------~~~~~~~--- 545 (656)
+.||.-++.....-+.+... ...|..+..+|+|++||..+ +..|.|..+..+. ..+.+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 45555555433333333322 23678899999999999885 5588888876321 1233332
Q ss_pred ---CCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCCe--eeEeee---------CCCccEEEEEEcCCCCEEEEEE
Q 006220 546 ---HRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASGR--CVTPLM---------GHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 546 ---h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~~--~~~~~~---------~h~~~V~~l~~s~~~~~l~sgs 608 (656)
...+|..+.|+|- |..|++-..|+.|++||+.... +. .+. .....|.+++|+.++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 2578999999994 5689999999999999997522 11 221 1225688999998876666655
Q ss_pred --CCCcEEEEe
Q 006220 609 --ADCTVKLWD 617 (656)
Q Consensus 609 --~Dg~I~iWd 617 (656)
..|.|+-.-
T Consensus 199 ~t~~GDIYAlc 209 (452)
T 3pbp_A 199 TTEGGDIFAFY 209 (452)
T ss_dssp CTTSCEEEEES
T ss_pred cCCCCCEEEEC
Confidence 667766543
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.51 E-value=0.61 Score=47.98 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=108.8
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-eeEEee---CCCccEEEEEEecC---CCEEEEEEC----C----C
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-NLVCYK---GHNYPVWDVQFNPQ---GHYFASSSH----D----R 485 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~~~~~~---~h~~~V~~l~~sp~---~~~l~sgs~----D----g 485 (656)
-....+++|.|+|++++ +..+|.|++++. ++. .+..+. ........|+++|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34567999999998554 456699999974 343 222111 12345789999997 445544432 3 5
Q ss_pred cEEEEECCCC--c---e--e-EEec-CCCCCeeEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCC------
Q 006220 486 TARIWSMDRI--Q---P--L-RIMA-GHLSDVDCVRWHINCNYIATGSS-------------DKTVRLWDVSSG------ 537 (656)
Q Consensus 486 ~i~lwd~~~~--~---~--~-~~~~-~~~~~V~~v~~~p~~~~l~tgs~-------------dg~V~iwd~~~~------ 537 (656)
.|..|+.... . . + ..+. ........++|.|+|.+.++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543 1 1 1 1122 11123467999999986666432 245666665321
Q ss_pred --eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCC---cEEEEeCCC--------C--------eeeEeeeCCCccEEEE
Q 006220 538 --ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDG---TIMMWDLAS--------G--------RCVTPLMGHTSCVWTL 595 (656)
Q Consensus 538 --~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg---~I~iwD~~~--------~--------~~~~~~~~h~~~V~~l 595 (656)
.....-.++.. ...++|+| +|+++++-...+ .|.+..-.. + .++..+.........+
T Consensus 186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 01111234433 45799999 666555432221 243332110 0 1222231122457788
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEeCCCC
Q 006220 596 AYS-------CEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 596 ~~s-------~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+|. .+|.++++.-..+.|...++...
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 883 56777776666778888887753
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.48 E-value=0.18 Score=50.78 Aligned_cols=188 Identities=10% Similarity=0.086 Sum_probs=92.3
Q ss_pred ccCCCEEEEEeC----CC-------eEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-------CcEEE
Q 006220 430 SPLGDFILSSSA----DT-------TIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-------RTARI 489 (656)
Q Consensus 430 spd~~~L~s~s~----Dg-------~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-------g~i~l 489 (656)
..++..++.|+. ++ .+..||..+.+-... +...... .+++.. ++..++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence 345677777773 11 166778765533221 1111111 122222 56777777754 24778
Q ss_pred EECCCCceeEEecCCCCCe-eEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCE
Q 006220 490 WSMDRIQPLRIMAGHLSDV-DCVRWHINCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRY 561 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V-~~v~~~p~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~ 561 (656)
||..+.+-...-....... .+++. .++..++.|+. -..+.+||..+.+-...-...... -.+++. -++++
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i 209 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI 209 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred EeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence 8887654333211111111 11222 35666666653 245999999887544321111111 112222 25677
Q ss_pred EEEEECC-----CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC--------------CcEEEEeCCC
Q 006220 562 MASGDED-----GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD--------------CTVKLWDVTT 620 (656)
Q Consensus 562 L~s~~~d-----g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D--------------g~I~iWd~~~ 620 (656)
++.|+.+ ..+.+||+.+.+-. ..+.........+. .++.+++.||.+ ..+.+||+.+
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 7777643 35778998765422 22221111112222 256777777654 3577888877
Q ss_pred CCc
Q 006220 621 STK 623 (656)
Q Consensus 621 ~~~ 623 (656)
.+-
T Consensus 288 ~~W 290 (318)
T 2woz_A 288 KEW 290 (318)
T ss_dssp TEE
T ss_pred CEe
Confidence 553
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.39 E-value=2.6 Score=50.46 Aligned_cols=241 Identities=11% Similarity=0.082 Sum_probs=133.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC-
Q 006220 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG- 433 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~- 433 (656)
+|+++-.+ .+|++|+..|.=.+|.+...... . ............-+||.+++.....
T Consensus 330 ssl~~l~~-g~lFvgS~~Gds~l~~~~~~~~~---------~------------~~~~~~~~~~~N~~PI~D~~v~d~~~ 387 (1158)
T 3ei3_A 330 ECLTYLDN-GVVFVGSRLGDSQLVKLNVDSNE---------Q------------GSYVVAMETFTNLGPIVDMCVVDLER 387 (1158)
T ss_dssp SEEEECST-TEEEEECSSSCEEEEEECSSCCT---------T------------SCCEEEEEEECCCCSEEEEEEECTTS
T ss_pred cEEEEECC-CEEEEEEecCCcEEEEEecCCCC---------c------------cceEEeEeeecCcCCceeEEEEccCC
Confidence 45555444 47888988888888887642110 0 0011112222345788888775422
Q ss_pred ---CEEEEEe---CCCeEEEEeccCCcee-E--EeeCCCccEEEEEEe---cCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 434 ---DFILSSS---ADTTIRLWSTKLNANL-V--CYKGHNYPVWDVQFN---PQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 434 ---~~L~s~s---~Dg~I~lwd~~~~~~~-~--~~~~h~~~V~~l~~s---p~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
..+++++ .+|+++++.-.-+-.. . .+. ....+|.+... ....|++.+..+.+ .++.+... .+...
T Consensus 388 ~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev 464 (1158)
T 3ei3_A 388 QGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET 464 (1158)
T ss_dssp SSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE
T ss_pred CCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc
Confidence 3555554 3678888764322211 1 122 23567777653 24567877777666 55555321 22222
Q ss_pred c--CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 502 A--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 502 ~--~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
. +-......++... .+..++=.+ ...|++.+...+..+..+.... ..|.+.+.+ +.+++.++ ++.+.++++.
T Consensus 465 ~~~gf~~~~~TL~~~~l~~~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~ 540 (1158)
T 3ei3_A 465 ELMGFVDDQQTFFCGNVAHQQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIH 540 (1158)
T ss_dssp CCTTCCSSSCEEEEEEETTTEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEE
T ss_pred ccccccCCCCcEEEEEcCCCeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEee
Confidence 1 1111111121111 112333222 3467788876666666665433 357777665 34666665 6788888887
Q ss_pred CCeeeEee-eCCCccEEEEEEcCC------CCEEEEEEC-CCcEEEEeCCCCCce
Q 006220 578 SGRCVTPL-MGHTSCVWTLAYSCE------GSLLASGSA-DCTVKLWDVTTSTKV 624 (656)
Q Consensus 578 ~~~~~~~~-~~h~~~V~~l~~s~~------~~~l~sgs~-Dg~I~iWd~~~~~~~ 624 (656)
.++..... ..-...|.|+++.+. +.+++.|.. |++|+|+++...+..
T Consensus 541 ~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 541 PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 65432211 123457999999763 469999996 999999999865544
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.30 E-value=2.8 Score=50.23 Aligned_cols=174 Identities=10% Similarity=0.096 Sum_probs=106.1
Q ss_pred eEEEEeccCCceeEEeeC-CCccEEEEEEec----CCCEEEEEE----------CCCcEEEEECCCCceeEEec-CCCCC
Q 006220 444 TIRLWSTKLNANLVCYKG-HNYPVWDVQFNP----QGHYFASSS----------HDRTARIWSMDRIQPLRIMA-GHLSD 507 (656)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp----~~~~l~sgs----------~Dg~i~lwd~~~~~~~~~~~-~~~~~ 507 (656)
.|++.|..+++.+..+.- ....+.+++... ...+|++|+ ..|.|++|++...+...... ...+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477788777776655542 233455555332 246888886 34789999987443222211 33567
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeeeEee
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA--SGRCVTPL 585 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~--~~~~~~~~ 585 (656)
|++++-- +| +|++|- ..+|++|++...+.++.-..+-..|..+.....|++++.|..-..|.++..+ .++....-
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 8877633 45 555553 5799999998765554222122223333333357899999887777776543 33333222
Q ss_pred e-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 586 M-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 586 ~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
. .+...++++.|-.+ ..++.+..+|+|.+......
T Consensus 965 ~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence 2 23456788887544 46788999999999988763
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.18 E-value=0.13 Score=51.38 Aligned_cols=173 Identities=18% Similarity=0.158 Sum_probs=88.4
Q ss_pred CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCceeEEecCC--CCCeeEEEE
Q 006220 443 TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPLRIMAGH--LSDVDCVRW 513 (656)
Q Consensus 443 g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~~--~~~V~~v~~ 513 (656)
..+..||..+..-... +...... .+++. -++..++.|+.+ ..+.+||..+.+-...-... .....++.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 3577888776542221 1111111 12222 256677777754 35888898776533322111 11122222
Q ss_pred cCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCEEEEEECC-------CcEEEEeCCCC
Q 006220 514 HINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRYMASGDED-------GTIMMWDLASG 579 (656)
Q Consensus 514 ~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~L~s~~~d-------g~I~iwD~~~~ 579 (656)
-++..++.|+.++ .+.+||+.+.+-...-... .....++. -++++++.|+.+ ..+.+||+.+.
T Consensus 107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 2566777777553 5888998877544321111 11112222 256666666542 35889998776
Q ss_pred eeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220 580 RCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK 623 (656)
Q Consensus 580 ~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~ 623 (656)
+-.. .+.........+.+ ++.+++.|+.+ +.+.+||+.+.+-
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 4322 22211111122222 57777887764 3688999877543
No 330
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.08 E-value=0.15 Score=51.00 Aligned_cols=181 Identities=9% Similarity=0.039 Sum_probs=93.2
Q ss_pred EEEEEeC--CCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC----CcEEEEECCCCceeEEecCCC-
Q 006220 435 FILSSSA--DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD----RTARIWSMDRIQPLRIMAGHL- 505 (656)
Q Consensus 435 ~L~s~s~--Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D----g~i~lwd~~~~~~~~~~~~~~- 505 (656)
+++.|+. ...+.+||..+.+-... +.........+. -++..++.|+.+ ..+.+||..+.+-...-....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3444543 35688888876543221 111111111222 256677777755 568889988765433222111
Q ss_pred -CCeeEEEEcCCCCEEEEEECC------CcEEEEeCCCCeeEEEEecCCCCe-EEEEEcCCCCEEEEEEC---------C
Q 006220 506 -SDVDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSMI-LSLAMSPDGRYMASGDE---------D 568 (656)
Q Consensus 506 -~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h~~~i-~~l~~sp~g~~L~s~~~---------d 568 (656)
....++. -++..++.|+.+ ..+.+||..+.+-...-....... .+++. -++++++.|+. -
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence 1112222 256677777755 468999998876443211111111 11222 25666666653 3
Q ss_pred CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220 569 GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST 622 (656)
Q Consensus 569 g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~ 622 (656)
..+.+||+.+.+-.. .+......-..+.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 458899988764322 22111111122222 56777777654 358889987754
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.99 E-value=0.17 Score=51.97 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=66.3
Q ss_pred CcEEEEECCCCceeEEecCCCC-Ce-eEEEEcCCCCEEEEEEC------CCcEEEEeC--CCCeeEEE--EecCCCCeEE
Q 006220 485 RTARIWSMDRIQPLRIMAGHLS-DV-DCVRWHINCNYIATGSS------DKTVRLWDV--SSGECVRI--FIGHRSMILS 552 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~-~V-~~v~~~p~~~~l~tgs~------dg~V~iwd~--~~~~~~~~--~~~h~~~i~~ 552 (656)
..+.+||+.+.+-...-..... .- .+++.. ++..++.|+. ...+..||+ .+..-... +........+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4788999887653332211111 11 222222 5556666653 345777887 44332221 1111111111
Q ss_pred EEEcCCCCEEEEEECC----------------------CcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220 553 LAMSPDGRYMASGDED----------------------GTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 553 l~~sp~g~~L~s~~~d----------------------g~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs 608 (656)
.+...++++++.|+.+ ..+.+||+.+.+ .+..+......-.++ ..++++++.||
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence 1223356777777632 257789987653 333333222222222 24678888888
Q ss_pred CCC------cEEEEeCCCCCceeecc
Q 006220 609 ADC------TVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 609 ~Dg------~I~iWd~~~~~~~~~~~ 628 (656)
.++ .|.++++++++.....+
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 653 35566888777655443
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.84 E-value=3.5 Score=46.90 Aligned_cols=223 Identities=10% Similarity=0.116 Sum_probs=129.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|.|+....+| .|.+|+.+| +..||........ ........|.++.. .
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----------------------------~~~~~~~~i~~i~~-~ 111 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----------------------------PETDFPTDVRTMAL-Q 111 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----------------------------CSCCCCSCEEEEEE-E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----------------------------cccCCCceEEEEEe-c
Confidence 458888777666 566676665 7788865311000 00001224666654 3
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEee-----CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--- 503 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--- 503 (656)
++ .|..|+.+ .|..++..++.. ..+. .....|.++....+|.+.+ |+.+ -+..++..+.+.......
T Consensus 112 ~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~ 186 (758)
T 3ott_A 112 GD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHS 186 (758)
T ss_dssp TT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCT
T ss_pred CC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCcc
Confidence 44 56666665 588888876543 2331 1234588888877776544 5554 477788766543222111
Q ss_pred --CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 504 --HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 504 --~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
....|.++...+++..|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.+++..++..
T Consensus 187 ~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 187 SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC
T ss_pred ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE
Confidence 1124788888777776666764 4688899887754332211234588888887776554 4444 478888766543
Q ss_pred eEeeeC--------CCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 582 VTPLMG--------HTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 582 ~~~~~~--------h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
. .+.. ....|.++....+|.+.+ |+..| +.++
T Consensus 264 ~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 264 Q-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp E-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred E-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 2 2211 124689998888887554 44455 5444
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.82 E-value=0.51 Score=47.35 Aligned_cols=143 Identities=7% Similarity=0.021 Sum_probs=73.6
Q ss_pred CCCEEEEEeCC--------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEEC-C-----CcEEEEECCCC
Q 006220 432 LGDFILSSSAD--------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSH-D-----RTARIWSMDRI 495 (656)
Q Consensus 432 d~~~L~s~s~D--------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~-D-----g~i~lwd~~~~ 495 (656)
++..++.|+.+ ..+.+||..+.+-.. .+....... +++. -++..++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 45666666632 458888887654221 111111111 1222 35667777775 2 46888998775
Q ss_pred ceeEEecC--CCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEEEE
Q 006220 496 QPLRIMAG--HLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 496 ~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~ 566 (656)
+-...-.. ......++. -++..++.|+.++ .+.+||+.+.+-...-.... ....++.+ ++++++.|+
T Consensus 176 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG 251 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGG 251 (315)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEE
T ss_pred eEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECC
Confidence 43222111 111112222 2567777777654 58899998775443321111 11122222 567777776
Q ss_pred CCC--------------cEEEEeCCCCe
Q 006220 567 EDG--------------TIMMWDLASGR 580 (656)
Q Consensus 567 ~dg--------------~I~iwD~~~~~ 580 (656)
.++ .+.+||+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 252 FATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ccccCcCCccccccccCcEEEecCCCCh
Confidence 532 36677876654
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.80 E-value=0.69 Score=49.40 Aligned_cols=104 Identities=9% Similarity=0.086 Sum_probs=61.6
Q ss_pred ccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecC------CCCCeeEEEEcCC---CCEEEEEEC-------
Q 006220 464 YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAG------HLSDVDCVRWHIN---CNYIATGSS------- 525 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~------~~~~V~~v~~~p~---~~~l~tgs~------- 525 (656)
...+.|+|.|+|+++++-...+.|++++..++... ..+.. ....+..|+|+|+ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999987666544457888876544432 22221 2345678999995 555554432
Q ss_pred ------CCcEEEEeCCCC--e---eEEEE---e-cCCCCeEEEEEcCCCCEEEEEEC
Q 006220 526 ------DKTVRLWDVSSG--E---CVRIF---I-GHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 526 ------dg~V~iwd~~~~--~---~~~~~---~-~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
...|.-|+...+ . ....+ . ........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655322 1 11112 1 11235788999999987776553
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.021 Score=58.54 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=106.8
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCceeEEecC----C
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFN--PQGHYFASS--SHDRTARIWSMDRIQPLRIMAG----H 504 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~s--p~~~~l~sg--s~Dg~i~lwd~~~~~~~~~~~~----~ 504 (656)
..++.++.||.|.-.|..+|+.+..++.. ..++....-. +.+..++.+ +.||.++.++..++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999988887654 1222221100 112234433 5899999999887754433321 1
Q ss_pred CCCeeE----EEEc----CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC--CC-----eEEEEEc-----CCCCEEEE
Q 006220 505 LSDVDC----VRWH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHR--SM-----ILSLAMS-----PDGRYMAS 564 (656)
Q Consensus 505 ~~~V~~----v~~~----p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~--~~-----i~~l~~s-----p~g~~L~s 564 (656)
.+++.. +... ..+..+++|+.+|.+.-.|+++|+.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122211 0000 145688999999999999999999999886431 11 1112111 12456777
Q ss_pred EECCCcEEEEeCCCCeeeEee-----eCCCc--cEE-EEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 565 GDEDGTIMMWDLASGRCVTPL-----MGHTS--CVW-TLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~-----~~h~~--~V~-~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+..+..+.+.+ ++|+ +..+ ..+.. .+. +-..+.++.+ +.++.||.|.-.|..++....
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777766 4453 2111 11100 000 0001123555 447788888888888777665
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.65 E-value=0.16 Score=48.26 Aligned_cols=141 Identities=16% Similarity=0.061 Sum_probs=83.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee------EEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------VCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~------~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
..+..++|+|++.+.++ .+|.+.-.+..+.... ..+- +-.. -..+.|.|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36679999998885555 6677666665442221 1110 1111 367899999988777 56998888753
Q ss_pred CCce-------eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------EEEEe-cCCCCeEEEEEcCCC
Q 006220 494 RIQP-------LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------VRIFI-GHRSMILSLAMSPDG 559 (656)
Q Consensus 494 ~~~~-------~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------~~~~~-~h~~~i~~l~~sp~g 559 (656)
+... ..+-.+.-..+.+|.|.|+|.+.++. |+.++-+..-++.. ...+. ..-.....+.|.++|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2111 11222233578999999999877766 77765443332211 11111 222344557788888
Q ss_pred CEEEEEECCCcE
Q 006220 560 RYMASGDEDGTI 571 (656)
Q Consensus 560 ~~L~s~~~dg~I 571 (656)
.+.++. +|.+
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 776666 6644
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.19 Score=51.32 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=77.4
Q ss_pred eCCCeEEEEeccCCceeEEeeC----CCccEEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC-
Q 006220 440 SADTTIRLWSTKLNANLVCYKG----HNYPVWD---VQF-----NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS- 506 (656)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~----h~~~V~~---l~~-----sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~- 506 (656)
+.||.|..++..+|.....+.. ...|+.. ... +..+..+++|+.+|++...|..+++.+..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~ 143 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN 143 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence 5788888888877644433321 1222221 000 01456789999999999999999999988863311
Q ss_pred ------CeeEEEEc-----CCCCEEEEEECCCcEEEEeCCCCeeEEE-----EecCCCC--e-EEEEEcCCCCEEEEEEC
Q 006220 507 ------DVDCVRWH-----INCNYIATGSSDKTVRLWDVSSGECVRI-----FIGHRSM--I-LSLAMSPDGRYMASGDE 567 (656)
Q Consensus 507 ------~V~~v~~~-----p~~~~l~tgs~dg~V~iwd~~~~~~~~~-----~~~h~~~--i-~~l~~sp~g~~L~s~~~ 567 (656)
...|.... ..+..++.|..+..+.+.+ ++|+ +.. +..+... + .+-..+.++.+ +.++.
T Consensus 144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~ 220 (339)
T 2be1_A 144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFR 220 (339)
T ss_dssp C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEET
T ss_pred ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECC
Confidence 01122111 1245777777777777777 4553 211 1111000 0 00001224555 44678
Q ss_pred CCcEEEEeCCCCeeeE
Q 006220 568 DGTIMMWDLASGRCVT 583 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~ 583 (656)
||.|.-+|..+|..+-
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 8888888888777654
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.55 E-value=0.42 Score=57.29 Aligned_cols=230 Identities=11% Similarity=0.170 Sum_probs=130.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEE
Q 006220 359 ISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILS 438 (656)
Q Consensus 359 fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s 438 (656)
.+|..+.+|.-. ..+++|+|+....+.. ... ...+|.-=.|-.+.. |+-
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klk----------------------------s~~-~~e~VvfWkWis~~~-l~l 121 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMK----------------------------AHT-MTDDVTFWKWISLNT-VAL 121 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhc----------------------------ccc-cCCCceEEEecCCCe-eEE
Confidence 456666666653 6789999987522111 111 124566666764433 333
Q ss_pred EeCCCeEEEEeccCC-ceeEEeeCC----CccEEEEEEecCCCEEEEEE-------CCCcEEEEECCCCceeEEecCCCC
Q 006220 439 SSADTTIRLWSTKLN-ANLVCYKGH----NYPVWDVQFNPQGHYFASSS-------HDRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 439 ~s~Dg~I~lwd~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~l~sgs-------~Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
.+ +..|.-|++... .++..+..| ...|..-..+++..+++..| -.|.+.+|+++.. ..+.+.||..
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 33 346999999742 333333333 45676777788888776554 3488999998764 3344556654
Q ss_pred CeeEEEEc--C-CCCEEEEEEC---CCcEEEEeCCCC---ee------EEEEecC---CCCeEEEEEcCCCCEEEEEECC
Q 006220 507 DVDCVRWH--I-NCNYIATGSS---DKTVRLWDVSSG---EC------VRIFIGH---RSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 507 ~V~~v~~~--p-~~~~l~tgs~---dg~V~iwd~~~~---~~------~~~~~~h---~~~i~~l~~sp~g~~L~s~~~d 568 (656)
....+... + ....++.+.. .+.++|.++... .. +..+... ..-..++..|+....+...+.-
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 279 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecC
Confidence 44333332 1 1223332222 368888888432 11 1111111 2234467888888888899999
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
|.|.++|+.+|.++..-+-...+|...+-+....-++.....|.|.--.+...
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 99999999999988665444444544444433333444445665555555443
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.54 E-value=0.18 Score=50.62 Aligned_cols=184 Identities=13% Similarity=0.023 Sum_probs=94.1
Q ss_pred CCCEEEEEeC----CCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEEC----C-----CcEEEEECCCCc
Q 006220 432 LGDFILSSSA----DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSH----D-----RTARIWSMDRIQ 496 (656)
Q Consensus 432 d~~~L~s~s~----Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~----D-----g~i~lwd~~~~~ 496 (656)
++..++.|+. -..+.+||..+.+-... +....... +++.. ++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3555666653 23588888876543221 11111111 22222 5667777765 2 468888887654
Q ss_pred eeEEec--CCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220 497 PLRIMA--GHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 497 ~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
-...-. .......++.+ ++..++.|+.+ ..+.+||..+.+-...-. .......++.+ ++++++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 322211 11111222222 56666666543 468899988765433211 11111122222 5677777765
Q ss_pred C-----CcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCCc
Q 006220 568 D-----GTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTSTK 623 (656)
Q Consensus 568 d-----g~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~~ 623 (656)
+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 4 458899987764322 12111111222233 67777777764 4688999877543
No 340
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.43 E-value=2.5 Score=42.53 Aligned_cols=205 Identities=10% Similarity=0.105 Sum_probs=121.8
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC----c
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH----S 421 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h----~ 421 (656)
.-+.....|.-=.|-.+.. |+.- .+..|.-|++.... .+...+..| .
T Consensus 101 ks~~~~e~VvfWkWis~~~-L~lV-T~taVyHWs~~~~s---------------------------~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 101 KAHTMTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGES---------------------------QPVKMFDRHSSLAG 151 (365)
T ss_dssp EEEECSSCEEEEEECSSSE-EEEE-ESSEEEEEESSTTC---------------------------CCEEEEECCGGGTT
T ss_pred cceecCCccEEEEecCCCe-EEEE-cCCcEEEEcccCCC---------------------------CCceeeecchhccc
Confidence 3344456676666755444 4333 35679999986411 111122222 2
Q ss_pred cCEEEEEEccCCCEEEEEeC-------CCeEEEEeccCCceeEEeeCCCccEEEEEEec--C-CCEEEEEEC---CCcEE
Q 006220 422 GPVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--Q-GHYFASSSH---DRTAR 488 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~-------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~-~~~l~sgs~---Dg~i~ 488 (656)
..|..-..+++.++++..+- .|.+.+|+.+. ..-..+.||......+.+.. . ...|+.+.. .+.++
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 230 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 230 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 45667777888887765442 37889999884 44556677765443332221 1 123443332 25889
Q ss_pred EEECCCC---c------eeEEecCC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220 489 IWSMDRI---Q------PLRIMAGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 489 lwd~~~~---~------~~~~~~~~---~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (656)
+.++... . .+..+... ..-..++..++....++.-+.-|.|++||+.+|.++..-+-...+|..-+-+
T Consensus 231 IiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~ 310 (365)
T 2xzh_A 231 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 310 (365)
T ss_dssp EEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred EEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEeccc
Confidence 9988543 1 11222211 2334577788888889999999999999999999987766556666655554
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
.+..-+++....|.|.--.+...+
T Consensus 311 ~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 311 EATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp GGGTEEEEEETTCEEEEEEECTTT
T ss_pred CCCCcEEEEcCCCEEEEEEECccc
Confidence 444445555577776666555443
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.38 E-value=0.97 Score=46.25 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=83.4
Q ss_pred CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE--Ee----cCCCCCeeEEEEcCC---CCEEEEE---ECCCcEE
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IM----AGHLSDVDCVRWHIN---CNYIATG---SSDKTVR 530 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~--~~----~~~~~~V~~v~~~p~---~~~l~tg---s~dg~V~ 530 (656)
-...+.|+|.|+|.++++--..|.|++++...+.... .+ .........|+++|+ +.+|++. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3457899999999877766558999999866554322 12 123456789999995 3455443 2345566
Q ss_pred EEeCCCC----------eeE-EEEe-cCCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCe-----
Q 006220 531 LWDVSSG----------ECV-RIFI-GHRSMILSLAMSPDGRYMASGDE-------------DGTIMMWDLASGR----- 580 (656)
Q Consensus 531 iwd~~~~----------~~~-~~~~-~h~~~i~~l~~sp~g~~L~s~~~-------------dg~I~iwD~~~~~----- 580 (656)
-|....+ +.+ ..+. +.......|.|.|||.+.++.+. .|.|.=.+.. ++
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence 6665441 111 1121 11223457999999987777542 2444444443 22
Q ss_pred -----eeEeeeCCCccEEEEEEcCCCCEEEEE
Q 006220 581 -----CVTPLMGHTSCVWTLAYSCEGSLLASG 607 (656)
Q Consensus 581 -----~~~~~~~h~~~V~~l~~s~~~~~l~sg 607 (656)
.+. -.+|.. ...++|+|+|.+.++-
T Consensus 190 Pf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 190 PFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp SSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred CCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence 111 125543 4689999988766554
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.35 E-value=1.4 Score=44.03 Aligned_cols=144 Identities=11% Similarity=0.067 Sum_probs=71.8
Q ss_pred CCCEEEEEeCC-------CeEEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEEC------CCcEEEEECCCCc
Q 006220 432 LGDFILSSSAD-------TTIRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSSH------DRTARIWSMDRIQ 496 (656)
Q Consensus 432 d~~~L~s~s~D-------g~I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~ 496 (656)
++..++.|+.+ ..+.+||..+.+-...-. ...+. .+++. .++..++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 45666666653 347788877654322111 11111 11222 36667777764 2358899988765
Q ss_pred eeEEecCC--CCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 006220 497 PLRIMAGH--LSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 497 ~~~~~~~~--~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
-...-... .....++. -++..++.|+.+ ..+.+||+.+.+-...-. ........+. -++++++.|+.
T Consensus 187 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~ 262 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGF 262 (318)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCe
Confidence 33321111 11112222 256666777643 357789988765433211 1111112222 24667777664
Q ss_pred C--------------CcEEEEeCCCCee
Q 006220 568 D--------------GTIMMWDLASGRC 581 (656)
Q Consensus 568 d--------------g~I~iwD~~~~~~ 581 (656)
+ ..+.+||+.+.+-
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred eccCCCCceeccceeeeEEEEeCCCCEe
Confidence 3 3477778766543
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.13 E-value=0.27 Score=50.65 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=77.9
Q ss_pred cEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE----EecCCCCCeeEEEEcCC---CCEEEEEE-C-------CC
Q 006220 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR----IMAGHLSDVDCVRWHIN---CNYIATGS-S-------DK 527 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~----~~~~~~~~V~~v~~~p~---~~~l~tgs-~-------dg 527 (656)
..+.|+|.|+|+.++++...|.|++++.+... .+. .+.........++++|+ +.+|+++. . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 45789999999834455678999999854321 111 11122345688999995 45555443 2 23
Q ss_pred cEEEEeCCCC--e--eEE-EEecC------CCCeEEEEEcCCCCEEEEEECC-------------CcEEEEeCCCCe---
Q 006220 528 TVRLWDVSSG--E--CVR-IFIGH------RSMILSLAMSPDGRYMASGDED-------------GTIMMWDLASGR--- 580 (656)
Q Consensus 528 ~V~iwd~~~~--~--~~~-~~~~h------~~~i~~l~~sp~g~~L~s~~~d-------------g~I~iwD~~~~~--- 580 (656)
.|..|+...+ . ... .+... ......|+|.|||.+.++.+.. |.|.-+|.. +.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCC
Confidence 5666666533 1 111 12211 1123579999999665554432 456666653 22
Q ss_pred ----------eeEee-eCCCccEEEEEEcC-CCCEEEE
Q 006220 581 ----------CVTPL-MGHTSCVWTLAYSC-EGSLLAS 606 (656)
Q Consensus 581 ----------~~~~~-~~h~~~V~~l~~s~-~~~~l~s 606 (656)
....+ .+|. ....++|+| ++.++++
T Consensus 178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11111 2443 367899999 5655544
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.95 E-value=3.4 Score=41.30 Aligned_cols=136 Identities=8% Similarity=0.024 Sum_probs=82.4
Q ss_pred EEccCCCEEEEEe----CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEec
Q 006220 428 SFSPLGDFILSSS----ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 428 ~~spd~~~L~s~s----~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|++++++|+-+. ....|...+++. .....+..+.. ..|++++..|+-.+. ...|...+++.....+.+.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 6777888887665 334555556653 33444443432 345777888776654 6788888988776655554
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECC--CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEeCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSD--KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE--DGTIMMWDLA 577 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~d--g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~--dg~I~iwD~~ 577 (656)
+ ... ..++|++.+|+-.... ..|..-++..+.. ..+.. ..+ ..|+|+|++|+-+.. .+.|..-++.
T Consensus 185 ~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 185 C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 3 222 3456989988876644 3566667665543 33332 334 347888888876643 3566666664
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.82 E-value=0.72 Score=45.78 Aligned_cols=185 Identities=14% Similarity=0.051 Sum_probs=96.1
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|..++...... ++. . ||.|..|-......+-.-..-...|..++...+ +.+.-. ||.++.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543222 233 4 889999976543222111111346777776643 333334 9999999765432221111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.....|..++...+. .+.-+ ||.|+.|-......+..-..-...|..++..... .++. .||.|..|=......+
T Consensus 138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT
T ss_pred cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC
Confidence 223456666654433 22233 7999999765422211111113457777765432 2333 5899999976543222
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..-......|..++.......++ . ||.|..|=-....
T Consensus 212 g~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRTA 248 (282)
T ss_dssp CCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCCC
T ss_pred CCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCCc
Confidence 11001113466776654433333 3 9999999876644
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.71 E-value=4.9 Score=42.09 Aligned_cols=158 Identities=9% Similarity=0.089 Sum_probs=101.7
Q ss_pred cCEEEEEEccCCCEEEEEeC-------CCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECC---CcEE
Q 006220 422 GPVYSASFSPLGDFILSSSA-------DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHD---RTAR 488 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~-------Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~D---g~i~ 488 (656)
..|..-..+++.++++..+- .|.+.+|+.+.+ .-..+.||......+....+ ...|+.+... +.++
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 229 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 45777777888888764432 478899998844 44567777665544433221 1244444432 7899
Q ss_pred EEECCCC---c------eeEEecC---CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220 489 IWSMDRI---Q------PLRIMAG---HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 489 lwd~~~~---~------~~~~~~~---~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (656)
+.++... . .+..+.. ...-..++..++....++.-+.-|.|.+||+.++.++..-+-...+|...+-+
T Consensus 230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (494)
T ss_dssp EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence 9998643 1 1111111 12334577888888899999999999999999999987766555666665555
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
....-+++....|.|.--.+....
T Consensus 310 ~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 310 EATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTTTEEEEEETTCEEEEEEECTTT
T ss_pred CCCCcEEEEccCceEEEEEEcccc
Confidence 554455555577777666665543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.58 E-value=1.7 Score=46.91 Aligned_cols=188 Identities=11% Similarity=0.127 Sum_probs=112.6
Q ss_pred CCCEEEEEe-CCCeEEEEeccCCceeEEeeC-CCccEEEEEEe--cCCCEEEEEEC-------CCcEE---------E--
Q 006220 432 LGDFILSSS-ADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSSH-------DRTAR---------I-- 489 (656)
Q Consensus 432 d~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~~~~l~sgs~-------Dg~i~---------l-- 489 (656)
||++|+.-. .+..|-..+++..++-..+.. ....+.+++|- |+..|+++++. ||... +
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 577887766 466788889988887665543 35568888886 68888888874 33311 1
Q ss_pred -EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---------------CcEEEEeC-------------------
Q 006220 490 -WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---------------KTVRLWDV------------------- 534 (656)
Q Consensus 490 -wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---------------g~V~iwd~------------------- 534 (656)
.|.++.+....+. -.+....+...+++.+.++.+.+ ..+.++|+
T Consensus 221 ~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 1222222111111 01234445567778887776532 12344433
Q ss_pred ------CC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC------ee-------eEeeeCCCc
Q 006220 535 ------SS----GECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG------RC-------VTPLMGHTS 590 (656)
Q Consensus 535 ------~~----~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~------~~-------~~~~~~h~~ 590 (656)
+. +..+..+..-......+.++|||+++++++ .+.++.++|+... +. +.... -.-
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence 32 111111111112334678999999988765 6789999998742 11 22222 234
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 591 CVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 591 ~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.....+|.++|....|.--|..|.-|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 5678899999966666779999999999753
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.51 E-value=2.4 Score=47.86 Aligned_cols=150 Identities=8% Similarity=0.064 Sum_probs=81.5
Q ss_pred CCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC--cEEEEECCCCceeEEe
Q 006220 432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR--TARIWSMDRIQPLRIM 501 (656)
Q Consensus 432 d~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~lwd~~~~~~~~~~ 501 (656)
++..++.|+.+ ..+.+||..+.+-.. ....... -.+++...++..++.||.++ .+.+||..+..-...-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 56677777653 357888887643221 1111111 11233323788888888654 6899998876433221
Q ss_pred c-----CCCCCeeEEEEcCC-CCEEEEEEC--C-----CcEEEEeCCCCee-----EEEEec---CCCCeEEEEEcCCCC
Q 006220 502 A-----GHLSDVDCVRWHIN-CNYIATGSS--D-----KTVRLWDVSSGEC-----VRIFIG---HRSMILSLAMSPDGR 560 (656)
Q Consensus 502 ~-----~~~~~V~~v~~~p~-~~~l~tgs~--d-----g~V~iwd~~~~~~-----~~~~~~---h~~~i~~l~~sp~g~ 560 (656)
. .......++.+..+ +..++.|+. + ..+.+||+.+... ...+.. ....-.+++...+++
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 11122234555555 566677765 2 4588999988761 112211 111112233333367
Q ss_pred EEEEEEC--------CCcEEEEeCCCCeee
Q 006220 561 YMASGDE--------DGTIMMWDLASGRCV 582 (656)
Q Consensus 561 ~L~s~~~--------dg~I~iwD~~~~~~~ 582 (656)
+++.||. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 7777774 346999999877543
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.22 E-value=6.8 Score=41.65 Aligned_cols=250 Identities=14% Similarity=0.142 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 352 NGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
..-+.|+|.|||+ .|+++...|.|++++............+. .+.... ...+..+....|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~---------~~~~~g-------~~~~~e~Gllgia~~ 77 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIH---------KLVQSG-------IKGGDERGLLSLAFH 77 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECT---------TTBCCC-------CSSSCCCSEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCc---------ceeccC-------ccccCCCcceeeEeC
Confidence 3567899999996 44455688999999643211000000000 000000 000224567889999
Q ss_pred cC----CCEEEEEeC--C----------CeEEEEeccCC----------ceeEEee--CCCccEEEEEEecCCCEEEEEE
Q 006220 431 PL----GDFILSSSA--D----------TTIRLWSTKLN----------ANLVCYK--GHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 431 pd----~~~L~s~s~--D----------g~I~lwd~~~~----------~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs 482 (656)
|+ +.+.++-+. + ..|.-|.+..+ +.+..+. ........|.|.|+|.++++.+
T Consensus 78 P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 78 PNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp TTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 86 333333221 1 13444555321 1222222 2223467899999998877766
Q ss_pred CCC-----------------cEEEEECCCC--------------------ceeEEecCCCCCeeEEEEcCC-----CC-E
Q 006220 483 HDR-----------------TARIWSMDRI--------------------QPLRIMAGHLSDVDCVRWHIN-----CN-Y 519 (656)
Q Consensus 483 ~Dg-----------------~i~lwd~~~~--------------------~~~~~~~~~~~~V~~v~~~p~-----~~-~ 519 (656)
..+ .|.-.+.+.. .+...-.+|.+ ...++|+|. |. +
T Consensus 158 d~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~ 236 (463)
T 2wg3_C 158 DGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLT 236 (463)
T ss_dssp CTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEE
T ss_pred CCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceE
Confidence 433 2333343331 01111224433 457899986 33 4
Q ss_pred EEEEECCC----cEEEEeCCCC------eeEEEEecCC-CCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCee
Q 006220 520 IATGSSDK----TVRLWDVSSG------ECVRIFIGHR-SMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 520 l~tgs~dg----~V~iwd~~~~------~~~~~~~~h~-~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
++.+...| .-.|..+..+ .++..+..|. ..++.+.|-. .|.+|+ +...+.|....+.....
T Consensus 237 ~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~ 315 (463)
T 2wg3_C 237 ILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTK 315 (463)
T ss_dssp EEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----
T ss_pred EEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCc
Confidence 44443212 2334444333 2334443221 4677777753 234554 44447766665543321
Q ss_pred ---eEee-e--------CCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCC
Q 006220 582 ---VTPL-M--------GHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVT 619 (656)
Q Consensus 582 ---~~~~-~--------~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~ 619 (656)
...+ . .....+.++...|||.++++.... ..=+||.+.
T Consensus 316 ~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 316 QWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred eeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 1111 1 123678999999999988877621 233567765
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.89 E-value=1.4 Score=49.71 Aligned_cols=192 Identities=11% Similarity=0.071 Sum_probs=102.7
Q ss_pred cCCCEEEEEeCC----CeEEEEeccCCceeEEe-e------CCCccEEEEEEec-CCCEEEEEECCC------cEEEEEC
Q 006220 431 PLGDFILSSSAD----TTIRLWSTKLNANLVCY-K------GHNYPVWDVQFNP-QGHYFASSSHDR------TARIWSM 492 (656)
Q Consensus 431 pd~~~L~s~s~D----g~I~lwd~~~~~~~~~~-~------~h~~~V~~l~~sp-~~~~l~sgs~Dg------~i~lwd~ 492 (656)
.++..++.|+.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356666777643 45888888766543322 1 0111112333333 677778887543 5778888
Q ss_pred CCCceeEEecCCCCC-eeEEEEcCCCCEEEEEECCC--cEEEEeCCCCeeEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 006220 493 DRIQPLRIMAGHLSD-VDCVRWHINCNYIATGSSDK--TVRLWDVSSGECVRIFI-----GHRSMILSLAMSPD-GRYMA 563 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~-V~~v~~~p~~~~l~tgs~dg--~V~iwd~~~~~~~~~~~-----~h~~~i~~l~~sp~-g~~L~ 563 (656)
.+.+-...-...... -.+++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775432221111111 11223324777888887654 79999998875433221 11122233555655 66777
Q ss_pred EEEC--C-----CcEEEEeCCCCee-----eEeeeC----CCccEEEEEEcCCCCEEEEEEC--------CCcEEEEeCC
Q 006220 564 SGDE--D-----GTIMMWDLASGRC-----VTPLMG----HTSCVWTLAYSCEGSLLASGSA--------DCTVKLWDVT 619 (656)
Q Consensus 564 s~~~--d-----g~I~iwD~~~~~~-----~~~~~~----h~~~V~~l~~s~~~~~l~sgs~--------Dg~I~iWd~~ 619 (656)
.||. + +.+.+||+.+... ...+.. ..... +++...++.+++.||. ...|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4588999887661 111111 11111 2222333677777774 3468999998
Q ss_pred CCCc
Q 006220 620 TSTK 623 (656)
Q Consensus 620 ~~~~ 623 (656)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
No 351
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.14 E-value=1.2 Score=53.35 Aligned_cols=194 Identities=13% Similarity=0.199 Sum_probs=119.1
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecCC---
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGH--- 504 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~--- 504 (656)
.+|..+.++.=+ ..++.|+|+.+...+..+.- ..+|.--.|-... .++..+ +..|+-|++.. ..|+..+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 455555554443 57899999998887776654 3456555665443 344333 46799999973 4566666544
Q ss_pred -CCCeeEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc--CC-CCEEEEEE---CCCc
Q 006220 505 -LSDVDCVRWHINCNYIATGS-------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMS--PD-GRYMASGD---EDGT 570 (656)
Q Consensus 505 -~~~V~~v~~~p~~~~l~tgs-------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s--p~-g~~L~s~~---~dg~ 570 (656)
...|..-..+++.++++..+ ..|.+.+|.+..+.. +.+.||.+....+... +. ...++.+. ..+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 34566667778888877533 357888998765433 3345665544333332 11 12222222 1368
Q ss_pred EEEEeCCCC---eeeEe-----e-e---CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 571 IMMWDLASG---RCVTP-----L-M---GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 571 I~iwD~~~~---~~~~~-----~-~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++|-++... ..... + . .-.....++..|+.-.++...+.-|.|.++|+.++..+...
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 999988543 11110 1 0 11233457778887788889999999999999999887644
No 352
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.59 E-value=1 Score=45.90 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=70.8
Q ss_pred CCCEEEEEeC-CCeEEEEeccC--C--ceeEEee-CCCccEEEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 006220 432 LGDFILSSSA-DTTIRLWSTKL--N--ANLVCYK-GHNYPVWDVQFNPQGHYFASSSH-D---------RTARIWSMDRI 495 (656)
Q Consensus 432 d~~~L~s~s~-Dg~I~lwd~~~--~--~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~-D---------g~i~lwd~~~~ 495 (656)
++..++.|+. ...+.++|..+ . ..+..+. ...... +++.. ++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4555566654 34688888863 2 1121112 111111 22222 5667777765 2 46888898775
Q ss_pred ceeEEecCC-CCCeeEEEEcCCCCEEEEEECC---------------------------------------CcEEEEeCC
Q 006220 496 QPLRIMAGH-LSDVDCVRWHINCNYIATGSSD---------------------------------------KTVRLWDVS 535 (656)
Q Consensus 496 ~~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~d---------------------------------------g~V~iwd~~ 535 (656)
+-...-... .......+...++..++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 433221111 1111111122466777778754 579999998
Q ss_pred CCeeEEEEecCC-CCe-EEEEEcCCCCEEEEEEC------CCcEEEEeC
Q 006220 536 SGECVRIFIGHR-SMI-LSLAMSPDGRYMASGDE------DGTIMMWDL 576 (656)
Q Consensus 536 ~~~~~~~~~~h~-~~i-~~l~~sp~g~~L~s~~~------dg~I~iwD~ 576 (656)
+.+-...-.... ... .+++.. ++++++.|+. ...+.+||+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 775443322111 111 223332 5666666653 345777876
No 353
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=90.98 E-value=0.23 Score=39.30 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHhc
Q 006220 3 ELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (656)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~ 32 (656)
.++|+++|++||...||..+-++||.|+..
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~ 39 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAEL 39 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence 368999999999999999999999999653
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.41 E-value=2.9 Score=41.33 Aligned_cols=185 Identities=18% Similarity=0.061 Sum_probs=96.7
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.|..++... .+.+.-. ||.|..|-......+-.-......|..++.... +.++. . ||.++.|-....-.+..-.
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 455555543 2222234 889999976543322111112235666766533 33444 4 8999999765422221111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.-...|..++...+ +.++-+ +|.|+.|-......+.........|..++...+ +.+.-. ||.|..|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCC
Confidence 11245777766544 333344 999999976542221111112345777766533 333334 799999976542222
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..-..-...|..++...+.. ++. .||.|..|-.....
T Consensus 173 g~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp SCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTS
T ss_pred CCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCC
Confidence 11111124577777654433 333 59999999876543
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.68 E-value=2 Score=46.40 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=76.7
Q ss_pred cEEEEECCC----CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC------ee-------EEEEecCC
Q 006220 486 TARIWSMDR----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG------EC-------VRIFIGHR 547 (656)
Q Consensus 486 ~i~lwd~~~----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~------~~-------~~~~~~h~ 547 (656)
.+.+.|.+. +..+..+-.-......+..+|+|+++++++ -+.+|.++|++.- +. +.... -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 356666654 222222222334556788999999998766 5789999998731 11 22222 22
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----------eeeEeeeCCCccEEEEEE------cCCCCEEEEEE
Q 006220 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASG----------RCVTPLMGHTSCVWTLAY------SCEGSLLASGS 608 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~----------~~~~~~~~h~~~V~~l~~------s~~~~~l~sgs 608 (656)
-.....+|.++|....+..-|..|.-|++... ..+.++.-|-.+- .+.- .++|++|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 34567899999966666779999999998643 3455555554332 2222 56889998875
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.86 E-value=30 Score=34.45 Aligned_cols=186 Identities=9% Similarity=0.049 Sum_probs=111.5
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeE---------EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--- 498 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--- 498 (656)
++..++++.+.+|.|+--.+....... .++.. ..+..+........++..+..|.++-.........
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456678899999999988766442211 12222 33445555556667888888998877765321111
Q ss_pred ---------EEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCC-------CeeEEEEecCCCCeEEEEEcCCC
Q 006220 499 ---------RIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 499 ---------~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
..+.. ...|.++...+ +..+++..+..|.++...+.. |.....+.. ...+..+.....+
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 01111 22344443322 467888899999999887742 222222222 4456666555556
Q ss_pred CEEEEEECCCcEEEEeCCC---------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 560 RYMASGDEDGTIMMWDLAS---------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~---------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
..++..+.+|.+..+.... |.....+.. ...|.++..-.++..+++.+..|..+...+..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6788889999998887643 222222222 34566666655666788899999998888754
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.92 E-value=13 Score=43.51 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~ 544 (656)
..+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777888888999999999999999999999988753
No 358
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=82.83 E-value=1.4 Score=35.01 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCC
Q 006220 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKS 35 (656)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~ 35 (656)
++.+++|.+|-.||+.-||..|--+|..|+...+.
T Consensus 3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 36789999999999999999999999999988764
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.02 E-value=47 Score=33.79 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=86.1
Q ss_pred CEEEEEeCCCeEEEEeccC-CceeEEe--eCCCccEEEEEEec--CCCEEEEEECCC----cEEEEECCCCceeEEecC-
Q 006220 434 DFILSSSADTTIRLWSTKL-NANLVCY--KGHNYPVWDVQFNP--QGHYFASSSHDR----TARIWSMDRIQPLRIMAG- 503 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~~--~~h~~~V~~l~~sp--~~~~l~sgs~Dg----~i~lwd~~~~~~~~~~~~- 503 (656)
..|+.|+..| +.+++... +.....+ ......|.+|++.| .+..+ +++..| .|.. ..+.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~-s~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFR-SDDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEE-ESSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEE-eCCCCCCceECCcc
Confidence 3566777666 55555432 2222221 12345699999998 44444 444444 3333 2333333222221
Q ss_pred -------------CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEec-------------------CCCC
Q 006220 504 -------------HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIG-------------------HRSM 549 (656)
Q Consensus 504 -------------~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------------------h~~~ 549 (656)
....|.++++.|. ...+++++..+.|...+ ..|+.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 1124778888872 56677766666665543 22322222211 1235
Q ss_pred eEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeC-----C--------CccEEEEEEcCC-CCEEEEEECCC
Q 006220 550 ILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG-----H--------TSCVWTLAYSCE-GSLLASGSADC 611 (656)
Q Consensus 550 i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-----h--------~~~V~~l~~s~~-~~~l~sgs~Dg 611 (656)
+.+|.+.|. ...|+.+..++.|...+ ..|+....+.. + ...+.++.++|. ...|..++..+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 789999883 34445554444444332 22332222211 0 124889999985 35666666544
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.09 E-value=26 Score=37.07 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCe---eEEEEe-----c----CCCCeEEEEEcCC----CCEEEEEEC
Q 006220 505 LSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGE---CVRIFI-----G----HRSMILSLAMSPD----GRYMASGDE 567 (656)
Q Consensus 505 ~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~---~~~~~~-----~----h~~~i~~l~~sp~----g~~L~s~~~ 567 (656)
......|+|.|++. .|+++...|.|++++..... .+..+. + .......|+|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35567899999996 45666788999999754221 122111 1 1346788999996 444333322
Q ss_pred --C----------CcEEEEeCCC----------CeeeEeee--CCCccEEEEEEcCCCCEEEEEECCC
Q 006220 568 --D----------GTIMMWDLAS----------GRCVTPLM--GHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 568 --d----------g~I~iwD~~~----------~~~~~~~~--~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
+ ..|.-|.+.. .+.+..+. ........|.|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 12333332 1123457899999998888776544
No 361
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.74 E-value=78 Score=32.24 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=106.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-----------eEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
.+..++.+.-..+.+.-+.||.|..|-...... ...+.. ....|..|+.. ..+.+....+|.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 455566666667777778899999996432111 111111 12245555543 4556666789999999
Q ss_pred ECCCCc-----------eeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----------eeE-EEEec-C
Q 006220 491 SMDRIQ-----------PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----------ECV-RIFIG-H 546 (656)
Q Consensus 491 d~~~~~-----------~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~----------~~~-~~~~~-h 546 (656)
-....- ....+. .....|..++......+.++-..||.|+.|-.... ... ..+.. .
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 653210 111111 12234666665443356666778999999965321 111 11111 1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------eeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----------CVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-----------~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
...|..++.. ..+.++-..+|.|..|=..... ....+.. ....|..++.. ....+....||.|+
T Consensus 264 ~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~ 339 (389)
T 3kci_A 264 GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVY 339 (389)
T ss_dssp TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEE
T ss_pred CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEE
Confidence 2246666654 3455556789999999653210 1111111 12346666654 34555668899999
Q ss_pred EEeCCCC
Q 006220 615 LWDVTTS 621 (656)
Q Consensus 615 iWd~~~~ 621 (656)
.|=....
T Consensus 340 ~wG~n~~ 346 (389)
T 3kci_A 340 TWGDNDE 346 (389)
T ss_dssp EEECCTT
T ss_pred EeeCCCC
Confidence 9987654
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.03 E-value=84 Score=31.84 Aligned_cols=182 Identities=9% Similarity=-0.064 Sum_probs=89.2
Q ss_pred ccCEEEEEEcc-CCCEEEEEeCCC----eEEEEeccCCceeEEeeC--------------CCccEEEEEEecC--CCEEE
Q 006220 421 SGPVYSASFSP-LGDFILSSSADT----TIRLWSTKLNANLVCYKG--------------HNYPVWDVQFNPQ--GHYFA 479 (656)
Q Consensus 421 ~~~V~~l~~sp-d~~~L~s~s~Dg----~I~lwd~~~~~~~~~~~~--------------h~~~V~~l~~sp~--~~~l~ 479 (656)
...|.+|++.| +...|..++..| .|... .+.+..-..+.. ....|+++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999998 233444444444 34333 232332222211 1125778899872 45566
Q ss_pred EEECCCcEEEEECCCCceeEEecC-------------------CCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCee
Q 006220 480 SSSHDRTARIWSMDRIQPLRIMAG-------------------HLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC 539 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~~~~~~~~-------------------~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~ 539 (656)
.++..+.|...+ +.++.-..+.. ....+.+|.++|. ...|++++.++.|...+ ..|+.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 666556554432 33333222211 1235788999883 45566665555444432 22322
Q ss_pred EEEEec-C------------CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeC--CC---ccEEEEEEcCC
Q 006220 540 VRIFIG-H------------RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMG--HT---SCVWTLAYSCE 600 (656)
Q Consensus 540 ~~~~~~-h------------~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--h~---~~V~~l~~s~~ 600 (656)
-..+.. . ...+.+|.+.|. ...|+.++..| |...+ ..++....+.. .. ..+.++.++|.
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211 0 124889999986 35666666544 44433 23333333221 11 34567888763
Q ss_pred -CCEEEEE
Q 006220 601 -GSLLASG 607 (656)
Q Consensus 601 -~~~l~sg 607 (656)
...|..+
T Consensus 289 ~~~~l~~~ 296 (394)
T 3b7f_A 289 DPRTVWVF 296 (394)
T ss_dssp CTTCEEEE
T ss_pred CCCEEEEE
Confidence 3334444
No 363
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=72.25 E-value=3.6 Score=37.84 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=36.0
Q ss_pred HHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhH
Q 006220 74 LRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (656)
Q Consensus 74 l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (656)
+.++|-+..|. -|+|+|+|-||.+.+.+.++|.|+-.|+.-|.
T Consensus 21 FL~yV~sq~DP---------spLLfYL~tdlYk~~~~Ke~rk~~~Ei~stFL 63 (211)
T 1iap_A 21 LLQHVALQFEP---------GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFL 63 (211)
T ss_dssp HHHHHHHHSCS---------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCc---------hhhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 45566665554 49999999999999999999999999988884
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.15 E-value=1.7e+02 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888899999999999999999999998875
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.97 E-value=1.4e+02 Score=33.26 Aligned_cols=174 Identities=11% Similarity=0.082 Sum_probs=91.4
Q ss_pred CeEEEEeccCCc--eeEEeeCCCccE-EEEEEecCCC-----EEEEEECC---CcEEEEECCCCc-eeEEecCCCCCeeE
Q 006220 443 TTIRLWSTKLNA--NLVCYKGHNYPV-WDVQFNPQGH-----YFASSSHD---RTARIWSMDRIQ-PLRIMAGHLSDVDC 510 (656)
Q Consensus 443 g~I~lwd~~~~~--~~~~~~~h~~~V-~~l~~sp~~~-----~l~sgs~D---g~i~lwd~~~~~-~~~~~~~~~~~V~~ 510 (656)
..|+.|.+-+.. -...+.+....+ .+...++++. .+++.+.+ ..+++.+.+... ....+.... .. .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~ 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS-DA-T 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT-TC-E
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC-cc-e
Confidence 568888876543 234455443333 2344555655 24544422 345666655321 222222111 11 2
Q ss_pred EEEcCCCCEEEEE----------ECCCcEEEEeCCCCe-------eEEE-Eec-CCCCeEEEEEcCCCCEEEEEECCCc-
Q 006220 511 VRWHINCNYIATG----------SSDKTVRLWDVSSGE-------CVRI-FIG-HRSMILSLAMSPDGRYMASGDEDGT- 570 (656)
Q Consensus 511 v~~~p~~~~l~tg----------s~dg~V~iwd~~~~~-------~~~~-~~~-h~~~i~~l~~sp~g~~L~s~~~dg~- 570 (656)
+..++.+..++.. ...+.|...|+.++. ..+. +.. ....+..+.+..+ .++++...++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 2334455554432 246778899987642 2232 322 2335777888865 56677767764
Q ss_pred -EEEEeCCCCe-eeEe-eeCC-CccEEEEEEcCCCC-EEEEEEC---CCcEEEEeCC
Q 006220 571 -IMMWDLASGR-CVTP-LMGH-TSCVWTLAYSCEGS-LLASGSA---DCTVKLWDVT 619 (656)
Q Consensus 571 -I~iwD~~~~~-~~~~-~~~h-~~~V~~l~~s~~~~-~l~sgs~---Dg~I~iWd~~ 619 (656)
|.++|+.++. .+.. +... .+.+..+.+++++. ++++.+. -+.+..+|+.
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6777776664 2333 2221 24566677777654 4555443 3568888876
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.77 E-value=92 Score=30.17 Aligned_cols=197 Identities=9% Similarity=0.029 Sum_probs=112.9
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEE---eccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc-
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLW---STKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ- 496 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lw---d~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~- 496 (656)
+.+..+.-......|+.-+..|.++-- ++........+. ....|..+.... +..+++.++.+|.++...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 445555544455667777777876643 332221111132 344566654422 56789999999999999875432
Q ss_pred ---eeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEEEEe-cCCCCeEEEEEcCCCCEEEE
Q 006220 497 ---PLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 497 ---~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~-~h~~~i~~l~~sp~g~~L~s 564 (656)
-+..+. .....+..+........++..+..|.+..++... ..-+..+. .....|..+...+++..++.
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE
Confidence 111111 1223455555555666888888999988887532 11122111 12345666665666778999
Q ss_pred EECCCcEEEEeCCC-------CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE--EeCCC
Q 006220 565 GDEDGTIMMWDLAS-------GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL--WDVTT 620 (656)
Q Consensus 565 ~~~dg~I~iwD~~~-------~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i--Wd~~~ 620 (656)
.+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. +++..
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 99999999887632 2223333 22344555444334456777788888877 77644
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.60 E-value=1.1e+02 Score=30.55 Aligned_cols=145 Identities=9% Similarity=0.064 Sum_probs=89.2
Q ss_pred CCCEEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC--CCce-----
Q 006220 432 LGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD--RIQP----- 497 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~--~~~~----- 497 (656)
+..+++.++.+|.|+-..+..... ...++. ...+..+........++..+..|.+..+... ....
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 467999999999999988764322 122333 3345555555566788888999999888776 3211
Q ss_pred --eEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-------eeEEEEe--cCCCCeEEEEEcCCCCEEEEE
Q 006220 498 --LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-------ECVRIFI--GHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 498 --~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-------~~~~~~~--~h~~~i~~l~~sp~g~~L~s~ 565 (656)
+..+. .....|.++...+.+.+++..+..|.++.-.+..- .-+..+. .-.+.+..+....+...++..
T Consensus 187 ~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~ 266 (327)
T 3uc1_A 187 SGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAV 266 (327)
T ss_dssp BCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred CCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEE
Confidence 11111 12344666666666678999999999888775321 2222222 113345554444445567777
Q ss_pred ECCCcEEEEeCC
Q 006220 566 DEDGTIMMWDLA 577 (656)
Q Consensus 566 ~~dg~I~iwD~~ 577 (656)
+.+|.+.-++..
T Consensus 267 T~~G~~ir~~~~ 278 (327)
T 3uc1_A 267 TSGGGVIRTAAR 278 (327)
T ss_dssp EGGGCEEEEEGG
T ss_pred cCCCeEEEEehh
Confidence 778887777654
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.61 E-value=1.2e+02 Score=30.76 Aligned_cols=192 Identities=10% Similarity=0.048 Sum_probs=103.6
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-----------eEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-----------LVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-----------~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
.|..++-. ....+.-..||.|..|-...... ...+.. ....+..++.+.-..+.+.-..||.|+.|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34444433 45566667788899986432111 111111 22345556676666777777889999999
Q ss_pred ECCCC--------c---eeEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-e----------eEEEEec-C
Q 006220 491 SMDRI--------Q---PLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-E----------CVRIFIG-H 546 (656)
Q Consensus 491 d~~~~--------~---~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~----------~~~~~~~-h 546 (656)
-.... . ....+.. ....|..|+.. ..+.++-+.+|.|+.|-.... + ....+.. .
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 65321 0 1111211 11245555543 345566678999999975321 0 1111111 2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------eeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-----------CVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-----------~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
...|..++......+.++-..||.|..|-....- ....+.. ....|..++... ...+.-..||.|.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~ 287 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVY 287 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEE
Confidence 2356777765433566777889999999643210 1111111 122466666543 3455557889999
Q ss_pred EEeCCC
Q 006220 615 LWDVTT 620 (656)
Q Consensus 615 iWd~~~ 620 (656)
.|=...
T Consensus 288 ~wG~n~ 293 (389)
T 3kci_A 288 TWGKGD 293 (389)
T ss_dssp EEECCG
T ss_pred EEeCCC
Confidence 997643
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=61.51 E-value=1.2e+02 Score=29.33 Aligned_cols=154 Identities=8% Similarity=0.077 Sum_probs=91.9
Q ss_pred cCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCc------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 422 GPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 422 ~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
..|..+.... +..+++.++.+|.|+-..+.... ....++. ...+..+........++..+..|.+..+....
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 4455543321 46789999999999999876542 1112222 33455555555666888899999998887542
Q ss_pred Cce-------eEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEEEEecCCCCeEEEEEcCCC
Q 006220 495 IQP-------LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 495 ~~~-------~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
-.. +..+. .....|..+...+++.+++..+..|.+....+.. ++-+..+ ...+.+..+....+.
T Consensus 147 ip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~ 225 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEE 225 (276)
T ss_dssp SCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSE
T ss_pred CCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCC
Confidence 111 11111 1224455555455667889999999998887632 2233333 233445544443344
Q ss_pred CEEEEEECCCcEEE--EeCC
Q 006220 560 RYMASGDEDGTIMM--WDLA 577 (656)
Q Consensus 560 ~~L~s~~~dg~I~i--wD~~ 577 (656)
..++..+.+|.+.. ++..
T Consensus 226 ~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 226 VELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEETTSCEEEEEEEGG
T ss_pred CEEEEEcCCCeEEEeeeCHH
Confidence 56777777888777 7654
No 370
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=60.69 E-value=1.5e+02 Score=30.28 Aligned_cols=243 Identities=7% Similarity=-0.036 Sum_probs=124.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|..++.. +.+.++-+.||.|..|-.....+...... ... . ...... . .....|..|+..
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~----~~~----~------~~~P~~-v-~~~~~i~~va~G- 135 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTS----EDG----S------ESKPDL-I-DLPGKALCISAG- 135 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCC----STT----S------SSSCEE-C-CCSSCEEEEEEC-
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCc----CCc----c------ccCCeE-E-cCCCCEEEEEcC-
Confidence 446555543 45566667899999998765332211000 000 0 000000 0 112356666554
Q ss_pred CCCEEEEEeCCCeEEEEec--cCCcee---------EEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC----
Q 006220 432 LGDFILSSSADTTIRLWST--KLNANL---------VCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI---- 495 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~--~~~~~~---------~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~---- 495 (656)
..+.+.-..||.|..|-. .....+ .... .....|..|+.. ..+.+.-..+|.|+.|-....
T Consensus 136 -~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG 212 (423)
T 3mvd_K 136 -DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLG 212 (423)
T ss_dssp -SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTS
T ss_pred -cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccC
Confidence 345556677899999975 221111 0011 123346555544 445566678999999964321
Q ss_pred -------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------eeEEEEec
Q 006220 496 -------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------ECVRIFIG 545 (656)
Q Consensus 496 -------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----------~~~~~~~~ 545 (656)
.+..........|..++.... ..++.-+.+|.|+.|-.... ....-...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~ 291 (423)
T 3mvd_K 213 RLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT 291 (423)
T ss_dssp SCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE
T ss_pred CCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc
Confidence 122222222334555554322 22333357889999964321 11111111
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC------------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~------------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
....|..|+.. ..+.++-..||.|+.|=.... .....+..-...|..++.... ..+....||.|
T Consensus 292 ~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v 367 (423)
T 3mvd_K 292 ELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKL 367 (423)
T ss_dssp CCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCE
T ss_pred CCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCE
Confidence 13456666654 345566678999999964321 111222222336777776533 44445789999
Q ss_pred EEEeCCCC
Q 006220 614 KLWDVTTS 621 (656)
Q Consensus 614 ~iWd~~~~ 621 (656)
+.|=....
T Consensus 368 ~~wG~n~~ 375 (423)
T 3mvd_K 368 YSWGSGVN 375 (423)
T ss_dssp EEEECCTT
T ss_pred EEECCCCC
Confidence 99987653
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.66 E-value=1.3e+02 Score=29.57 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=126.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
++..++++.+.+|.|+--.+........ ...+.....+... ..+..+........++..+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT-------------------GGKGLSSFDLNDG-DEIVIALCVNTHDYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS-------------------SCCCEECCCCCTT-CCEEEEEEEETTCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc-------------------CCCCceecccCCC-CEEEEEEEECCCCEEEEEE
Confidence 4667888999999999887754211100 0001111112222 3344444444556777788
Q ss_pred CCCeEEEEeccCC---------ce---eEEeeCCCccEEEEEEec---CCCEEEEEECCCcEEEEECCCCc-------ee
Q 006220 441 ADTTIRLWSTKLN---------AN---LVCYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQ-------PL 498 (656)
Q Consensus 441 ~Dg~I~lwd~~~~---------~~---~~~~~~h~~~V~~l~~sp---~~~~l~sgs~Dg~i~lwd~~~~~-------~~ 498 (656)
..|.++-.....- .. ...+.. ...|..+...+ ++.+++..+..|.++...+.... ..
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~ 144 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV 144 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE
Confidence 8888777765321 11 111221 23444443332 46788899999999998874322 11
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEEEEec-CCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFIG-HRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
..+.. ...+..+........++..+.+|.+..+.... +.-++.+.- ....|..+....++..|++.+..|.
T Consensus 145 i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 145 IKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp BCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred EecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 12222 34455555545556788888999988887642 112222221 2345666665556677888899999
Q ss_pred EEEEeCCCC---------eeeEeee-CCCccEEEE-EEcCCCCEEEEEECCCcEEEEeC
Q 006220 571 IMMWDLASG---------RCVTPLM-GHTSCVWTL-AYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 571 I~iwD~~~~---------~~~~~~~-~h~~~V~~l-~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
....++..- ..+..+. ...+.+.++ .+. +..-+...+..|.+.-..+
T Consensus 224 ~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 224 GKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEG
T ss_pred eEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence 998887432 1111222 222444443 343 4445556666775443444
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.94 E-value=2.4e+02 Score=31.88 Aligned_cols=146 Identities=10% Similarity=0.058 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-------Ccc
Q 006220 351 HNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-------HSG 422 (656)
Q Consensus 351 ~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~ 422 (656)
.+.|.+++++|. ...+.+++..+.|...+=. + .....+.. ...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G---------------------------~tW~~~~~~~~~~~~~~~ 64 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--T---------------------------SKWIPLNDFIEAQDMNIM 64 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--T---------------------------TEEEESCTTCCGGGGGGC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--C---------------------------CCeeECccCCCcccccCC
Confidence 457999999986 4556667677766444311 1 01111111 124
Q ss_pred CEEEEEEccCC-CEEEEEeCCCe----EEEE-eccCCceeEEeeCC---------CccEEEEEEecC-CCEEEEEECCCc
Q 006220 423 PVYSASFSPLG-DFILSSSADTT----IRLW-STKLNANLVCYKGH---------NYPVWDVQFNPQ-GHYFASSSHDRT 486 (656)
Q Consensus 423 ~V~~l~~spd~-~~L~s~s~Dg~----I~lw-d~~~~~~~~~~~~h---------~~~V~~l~~sp~-~~~l~sgs~Dg~ 486 (656)
.|.+|+++|.. ..++.+..... -.|| ..+.++.-...... ...+..++++|. ...++.+...+.
T Consensus 65 ~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 65 GTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp SEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred ceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 68999998853 34444432211 2333 33334332222110 113557888874 345555553443
Q ss_pred EEEEECCCCceeEEecC------CCCCeeEEEEcCC-CCEEEEEECC
Q 006220 487 ARIWSMDRIQPLRIMAG------HLSDVDCVRWHIN-CNYIATGSSD 526 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~------~~~~V~~v~~~p~-~~~l~tgs~d 526 (656)
|. ...+.++.-..+.. ....+..+.++|. +..++++..+
T Consensus 145 l~-~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 145 IW-KSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EE-EESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred EE-EECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 32 23444444433331 1245788999884 4566666654
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.00 E-value=31 Score=41.13 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~ 544 (656)
..+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566677888999999999999999999999988754
No 374
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=57.82 E-value=4.8 Score=36.95 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhH
Q 006220 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHE 125 (656)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~ 125 (656)
-|+|+|+|.||.+.+.+.++|.|+-.++..|.
T Consensus 50 ~~LlfyL~~d~yk~~~~Ke~rk~a~ei~stFL 81 (203)
T 3cx8_B 50 GPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFL 81 (203)
T ss_dssp HHHHHHHHHHHHHTSCTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999988885
No 375
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=55.68 E-value=3 Score=39.22 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHH
Q 006220 94 YPVFIHCFMDLVAKGHIQEARTFFNNFREDHEM 126 (656)
Q Consensus 94 ~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~ 126 (656)
-|+|+|+|-||.+.+.+.++|.|+-.|+.-|..
T Consensus 86 spLLfYL~tdlYk~~~~Ke~Rk~a~Ei~stFL~ 118 (246)
T 3ab3_B 86 GPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLE 118 (246)
T ss_dssp HHHHHHHHHHHHC-------CCTTHHHHHHTTS
T ss_pred hhhHHHHHHHHHhccChHHHHHHHHHHHHHHcC
Confidence 499999999999999999999999998887753
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.17 E-value=34 Score=40.77 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
.+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455667788899999999999999999999998775
No 377
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=51.97 E-value=14 Score=28.69 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHhcC
Q 006220 5 QVVEFVATYLKKKGFSEAENALQAEIQRN 33 (656)
Q Consensus 5 ~~~~~v~~yl~~~~~~~~e~~~~~e~~~~ 33 (656)
-++.+|.|||.-.||..|-+.|..|++..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47889999999999999999999999875
No 378
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=47.92 E-value=2.4e+02 Score=28.70 Aligned_cols=163 Identities=9% Similarity=0.088 Sum_probs=94.0
Q ss_pred eEEEEeccCC--ceeEEeeC------CCccEEEEEEe---cC----CCEEEEEE-CCCcEEEEECCCCceeEEecCC---
Q 006220 444 TIRLWSTKLN--ANLVCYKG------HNYPVWDVQFN---PQ----GHYFASSS-HDRTARIWSMDRIQPLRIMAGH--- 504 (656)
Q Consensus 444 ~I~lwd~~~~--~~~~~~~~------h~~~V~~l~~s---p~----~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~--- 504 (656)
.|.+||+.++ +.++.+.- ..+.+.++.+. |. +.++..+. ..+-|.++|+.+++..+....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777777777 66666542 13457777777 22 33444443 5678999999988766655210
Q ss_pred ---------------CCCeeEEEEcCC----CCEEEEEECCCcEEEEeCC-----C---CeeEEEEecCC---CCeEEEE
Q 006220 505 ---------------LSDVDCVRWHIN----CNYIATGSSDKTVRLWDVS-----S---GECVRIFIGHR---SMILSLA 554 (656)
Q Consensus 505 ---------------~~~V~~v~~~p~----~~~l~tgs~dg~V~iwd~~-----~---~~~~~~~~~h~---~~i~~l~ 554 (656)
...+..++.+|+ ++.|+-+...+. ++|.+. + ...+..+ +.. +....++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 135778888887 677776654432 233332 1 1222222 222 3344567
Q ss_pred Ec-CCCCEEEEEECCCcEEEEeCCC-C---eeeEee-eCCC-ccEEEEEEcCCCCEEEEEE
Q 006220 555 MS-PDGRYMASGDEDGTIMMWDLAS-G---RCVTPL-MGHT-SCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 555 ~s-p~g~~L~s~~~dg~I~iwD~~~-~---~~~~~~-~~h~-~~V~~l~~s~~~~~l~sgs 608 (656)
+. .+|.++++--..+.|..|+... . .....+ .... ..+.++.+..+|.+.+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 75 6787777777889999999865 1 111222 1111 3466777776766555543
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.69 E-value=71 Score=34.84 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=44.2
Q ss_pred CeeEEEEcCCCCEEEEEECC------------CcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEE
Q 006220 507 DVDCVRWHINCNYIATGSSD------------KTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASG 565 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~d------------g~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~ 565 (656)
....|+|+|.|+++++-..+ ..+.+.+..+++..+.+.++. +.++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45779999999866654322 246666777888888777664 579999999999988775
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=43.99 E-value=2.4e+02 Score=27.58 Aligned_cols=238 Identities=11% Similarity=0.013 Sum_probs=125.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
|+..++++.+.+|.|+--.+........ .+.+.....+..+ ..+..+........|+..+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~-------------------~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT 60 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRR-------------------GGKGKSAARIKEE-DFIDRLLVANTHDHILCFS 60 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------------------CCEEEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhcc-------------------CCCCceeeeeCCC-CEEEEEEEECCCCEEEEEE
Confidence 4566788899999998777653211000 0000011112222 3343444444556677777
Q ss_pred CCCeEEEEecc---C------CceeE---EeeCCCccEEEEEEe---cCCCEEEEEECCCcEEEEECCCCc-----eeEE
Q 006220 441 ADTTIRLWSTK---L------NANLV---CYKGHNYPVWDVQFN---PQGHYFASSSHDRTARIWSMDRIQ-----PLRI 500 (656)
Q Consensus 441 ~Dg~I~lwd~~---~------~~~~~---~~~~h~~~V~~l~~s---p~~~~l~sgs~Dg~i~lwd~~~~~-----~~~~ 500 (656)
..|.+.-+... . |..+. .+. ....|..+..- .++.+++..+..|.++-..+.... -+..
T Consensus 61 ~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~ 139 (307)
T 1zi0_A 61 SRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA 139 (307)
T ss_dssp TTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEES
T ss_pred CCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEE
Confidence 78876665542 1 11111 122 23345555432 356689999999999998764221 1111
Q ss_pred --ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~-~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
+..+ ..+..+....+...++..+.+|.+..++... ..-++.+. .....|.++...+++..|++.+..|.
T Consensus 140 i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 140 IKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp SCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred EEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 2223 4454544444556788888889888777632 11222111 12345666665555667888899999
Q ss_pred EEEEeCCCC---------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 571 IMMWDLASG---------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 571 I~iwD~~~~---------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
++-.++..- .....+....+.+..+....+...++..+.+|.+.-..+..
T Consensus 219 ~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 888876321 11222222334555554434445566777788777666654
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.46 E-value=86 Score=33.98 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCeeEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEE
Q 006220 506 SDVDCVRWHINCNYIATGSS------------DKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~------------dg~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~L~s~~ 566 (656)
+....|.|.++|.+.++... ...|..++..+++..+.+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774321 125777787788877766544 35689999999999888764
No 382
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.59 E-value=67 Score=35.08 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=41.6
Q ss_pred CeEEEEEcCCCCEEEEEECC------------CcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEE
Q 006220 549 MILSLAMSPDGRYMASGDED------------GTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG 607 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~d------------g~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sg 607 (656)
..-.|+|+|.|+++++-..+ +.+.+.+..+++...-+.++. ..++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999966654322 235566666777665555554 689999999999887665
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=41.37 E-value=3e+02 Score=27.96 Aligned_cols=134 Identities=7% Similarity=0.059 Sum_probs=81.0
Q ss_pred cEEEEECCCC--ceeEEecC------CCCCeeEEEEc---CC----CCEEEEEE-CCCcEEEEeCCCCeeEEEEecC---
Q 006220 486 TARIWSMDRI--QPLRIMAG------HLSDVDCVRWH---IN----CNYIATGS-SDKTVRLWDVSSGECVRIFIGH--- 546 (656)
Q Consensus 486 ~i~lwd~~~~--~~~~~~~~------~~~~V~~v~~~---p~----~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h--- 546 (656)
.|.+||+.+. +.++.+.- ..+.+..+.+. |. +.+++.+. ..+.|.++|+.+++..+....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4566677666 66655542 23456777777 22 34555444 4678999999999887765210
Q ss_pred ---------------CCCeEEEEEcCC----CCEEEEEECCCcEEEEeCC-----CC---eeeEee--eCCCccEEEEEE
Q 006220 547 ---------------RSMILSLAMSPD----GRYMASGDEDGTIMMWDLA-----SG---RCVTPL--MGHTSCVWTLAY 597 (656)
Q Consensus 547 ---------------~~~i~~l~~sp~----g~~L~s~~~dg~I~iwD~~-----~~---~~~~~~--~~h~~~V~~l~~ 597 (656)
...+..|++||+ +++|.-....+. ++|.+. .. ..+..+ ++....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 135778899987 677776655442 334332 11 112222 111123345667
Q ss_pred c-CCCCEEEEEECCCcEEEEeCCC
Q 006220 598 S-CEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 598 s-~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
. .+|.++++--..+.|..|+...
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 6777777777889999999876
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.58 E-value=36 Score=37.96 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG 545 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~ 545 (656)
..|.|+.+ +..++++-+.|+++|+||+++++++....-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666555 367999999999999999999999887653
No 385
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=39.10 E-value=4.4e+02 Score=29.24 Aligned_cols=193 Identities=8% Similarity=-0.007 Sum_probs=102.7
Q ss_pred EEEE-EccCCCEEEE-EeCC----CeEEEEeccCCceeE-Eee-CCCc------cEEEEEEecCCCEEEEE---------
Q 006220 425 YSAS-FSPLGDFILS-SSAD----TTIRLWSTKLNANLV-CYK-GHNY------PVWDVQFNPQGHYFASS--------- 481 (656)
Q Consensus 425 ~~l~-~spd~~~L~s-~s~D----g~I~lwd~~~~~~~~-~~~-~h~~------~V~~l~~sp~~~~l~sg--------- 481 (656)
..++ ++|++++++. -|.. ..|+++|+.+++.+. .+. .-.. ....++|..+...+++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 8899887653 3333 369999999887652 111 0000 11344787444444432
Q ss_pred -ECCCcEEEEECCCCc--eeEEecCCCCCee-EEEEcCCCCE-----EEEEECC---CcEEEEeCCC--CeeEEEEecCC
Q 006220 482 -SHDRTARIWSMDRIQ--PLRIMAGHLSDVD-CVRWHINCNY-----IATGSSD---KTVRLWDVSS--GECVRIFIGHR 547 (656)
Q Consensus 482 -s~Dg~i~lwd~~~~~--~~~~~~~~~~~V~-~v~~~p~~~~-----l~tgs~d---g~V~iwd~~~--~~~~~~~~~h~ 547 (656)
+....++.|.+-+.. -..++.+....+. ....++++.+ +++.+.+ ..+++.|... ++.+..... .
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP-S 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC-T
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC-C
Confidence 123568888876643 3445555444442 2334556552 3433322 3466666553 443333222 2
Q ss_pred CCeEEEEEcCCCCEEEEE----------ECCCcEEEEeCCCCe-------eeEe-ee-CCCccEEEEEEcCCCCEEEEEE
Q 006220 548 SMILSLAMSPDGRYMASG----------DEDGTIMMWDLASGR-------CVTP-LM-GHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~----------~~dg~I~iwD~~~~~-------~~~~-~~-~h~~~V~~l~~s~~~~~l~sgs 608 (656)
.. .+..++++.+++.. ...+.|...|+.++. .... +. .....+.++.|..+ .++++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12344556555532 246789999987632 1222 22 23356788899876 5777777
Q ss_pred CCCc--EEEEeCCCC
Q 006220 609 ADCT--VKLWDVTTS 621 (656)
Q Consensus 609 ~Dg~--I~iWd~~~~ 621 (656)
.++. |.++++.++
T Consensus 368 ~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 368 DNVVAKVVTFTLENE 382 (711)
T ss_dssp ETTEEEEEEECEETT
T ss_pred ECCEEEEEEEECCCC
Confidence 7764 667776554
No 386
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.00 E-value=3.1e+02 Score=27.12 Aligned_cols=197 Identities=9% Similarity=0.008 Sum_probs=111.6
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEe---ccCC------ceeE---EeeCCCccEEEEEEec---CCCEEEEEECCCc
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWS---TKLN------ANLV---CYKGHNYPVWDVQFNP---QGHYFASSSHDRT 486 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd---~~~~------~~~~---~~~~h~~~V~~l~~sp---~~~~l~sgs~Dg~ 486 (656)
..+..+........|+.-+..|.++... +... ..+. .+. ....|..+..-+ +..++++++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3444444444556666666777665544 3221 1111 111 233455544333 5789999999999
Q ss_pred EEEEECCCCce-----e--EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC--CCe-------eEEEEe-cCCCC
Q 006220 487 ARIWSMDRIQP-----L--RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS--SGE-------CVRIFI-GHRSM 549 (656)
Q Consensus 487 i~lwd~~~~~~-----~--~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~--~~~-------~~~~~~-~h~~~ 549 (656)
++...+..... + ..+.. ...+..+........|+..+..|.+..+.+. .-. -++.+. .....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99988654221 1 11222 2344444444556678888899998888765 211 111111 12345
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC-------eeeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASG-------RCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-------~~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|.++...+++.+|+..+..|.++.-.+... +-+..+ ..-.+.+..+....+...++..+.+|.+.-+++..
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777766666778999999999988875321 112222 22133455554444455677777888877777644
No 387
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.70 E-value=64 Score=35.98 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=44.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc--EEEEEEcC----------CCCEEEEEE--CCCcE
Q 006220 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC--VWTLAYSC----------EGSLLASGS--ADCTV 613 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~--V~~l~~s~----------~~~~l~sgs--~Dg~I 613 (656)
..|.++.+ +..++++-+.|.++++|++.+++++....-...+ ..+ ...| -+.++++-. .+|..
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s-~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~F 298 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPS-HFRKVEAVGEYLSLYNNTLVTLLPLENGLF 298 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSS-CCCCCCSCCCCEEESSSEEEEEETTTTCEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCcccccc-ccCcccCcchhHhheeeEEEEEecCCCCeE
Confidence 34565555 3679999999999999999999988766431110 000 0111 124555444 56789
Q ss_pred EEEeCCCCC
Q 006220 614 KLWDVTTST 622 (656)
Q Consensus 614 ~iWd~~~~~ 622 (656)
++|.+....
T Consensus 299 k~~~l~~~~ 307 (729)
T 3f7f_A 299 QMGTLLVDS 307 (729)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEEcC
Confidence 999985533
No 388
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.44 E-value=5.9e+02 Score=28.15 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=18.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 006220 352 NGLNCASISQD-GSLVAGGFSDSSLKVWD 379 (656)
Q Consensus 352 ~~V~~l~fs~d-g~~La~g~~dg~I~Iwd 379 (656)
+.|..++++|. ...+.+++..|.|..++
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~ 51 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD 51 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC
Confidence 37999999986 34566676666654443
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=30.35 E-value=4.4e+02 Score=26.56 Aligned_cols=238 Identities=13% Similarity=-0.008 Sum_probs=127.1
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEE
Q 006220 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSS 439 (656)
Q Consensus 360 s~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~ 439 (656)
-|+..++++.+.+|.|+--.+....... ..+.+.....+. ....+..+........|+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~-------------------r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~f 63 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQR-------------------RGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTF 63 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTC-------------------CCCCCSEEEECS-CCCCEEEEEEECTTCEEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhc-------------------cCCCCceecccC-CCCEEEEEEEecCCCEEEEE
Confidence 3677899999999999977654311000 000011112222 23455555555556677777
Q ss_pred eCCCeEEEEecc---C------CceeE---EeeCCCccEEEEEEec---CCCEEEEEECCCcEEEEECCCCce-----eE
Q 006220 440 SADTTIRLWSTK---L------NANLV---CYKGHNYPVWDVQFNP---QGHYFASSSHDRTARIWSMDRIQP-----LR 499 (656)
Q Consensus 440 s~Dg~I~lwd~~---~------~~~~~---~~~~h~~~V~~l~~sp---~~~~l~sgs~Dg~i~lwd~~~~~~-----~~ 499 (656)
+..|.+.-+... . |..+. .+. ....|.++.... .+.+++.++..|.++...+..... +.
T Consensus 64 T~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ 142 (370)
T 3l6v_A 64 TSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKI 142 (370)
T ss_dssp ETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEE
T ss_pred eCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceE
Confidence 778877665532 1 11111 122 234455554332 456899999999999988643221 11
Q ss_pred --EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEEEEe-cCCCCeEEEEEcC------------
Q 006220 500 --IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVRIFI-GHRSMILSLAMSP------------ 557 (656)
Q Consensus 500 --~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~~~~-~h~~~i~~l~~sp------------ 557 (656)
.+.. ...+..+........++..+.+|.+..++... ..-++.+. .....|.++...+
T Consensus 143 ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~ 221 (370)
T 3l6v_A 143 AINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDE 221 (370)
T ss_dssp SSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------
T ss_pred EEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccc
Confidence 1222 23344444444555777888888887776532 11122211 1223455544443
Q ss_pred -----------------------CCCEEEEEECCCcEEEEeCCCC-------eeeE--eeeCCCccEEEEEEcCCCCEEE
Q 006220 558 -----------------------DGRYMASGDEDGTIMMWDLASG-------RCVT--PLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 558 -----------------------~g~~L~s~~~dg~I~iwD~~~~-------~~~~--~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
++..|++.+..|..+...+..- +-+. .+....+.+..+.+..++..++
T Consensus 222 ~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~ 301 (370)
T 3l6v_A 222 SAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVM 301 (370)
T ss_dssp -------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred cccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEE
Confidence 4568889999999888876421 1122 2222234555554444445566
Q ss_pred EEECCCcEEEEeCC
Q 006220 606 SGSADCTVKLWDVT 619 (656)
Q Consensus 606 sgs~Dg~I~iWd~~ 619 (656)
..+..|.+.-..+.
T Consensus 302 liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 302 LISDGGTLVRTRGS 315 (370)
T ss_dssp EEETTCCEEEEEGG
T ss_pred EEcCCCeEEEeeHh
Confidence 66777776655553
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.33 E-value=1.9e+02 Score=31.30 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=41.7
Q ss_pred CeEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEEE
Q 006220 549 MILSLAMSPDGRYMASGDE------------DGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~------------dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs 608 (656)
....|.|.++|.+.++... .+.|..++..+++....+.+.. ..++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4677999999987664321 1256777776777555454433 5689999999999887654
No 391
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.02 E-value=6.5e+02 Score=28.15 Aligned_cols=146 Identities=10% Similarity=0.106 Sum_probs=77.1
Q ss_pred ccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecC-CCEEEEEECCCc----E
Q 006220 421 SGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQ-GHYFASSSHDRT----A 487 (656)
Q Consensus 421 ~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~-~~~l~sgs~Dg~----i 487 (656)
.+.|.+|+++|.. ..++.++..+.|...+ +.+..-..+..+ ...|.+|++.|. ...++.+..... .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999964 4566677667665544 223333333221 246999999984 344444443211 2
Q ss_pred EEE-ECCCCceeEEecCC-------C--CCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEec------CCCCe
Q 006220 488 RIW-SMDRIQPLRIMAGH-------L--SDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIG------HRSMI 550 (656)
Q Consensus 488 ~lw-d~~~~~~~~~~~~~-------~--~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~------h~~~i 550 (656)
.|| ..+.++.-..+... . ..+..++++|. .+.++++...+.|.. ....|+.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 333 44555443333211 1 13567888874 456666664444322 2222332222221 12457
Q ss_pred EEEEEcCC-CCEEEEEECC
Q 006220 551 LSLAMSPD-GRYMASGDED 568 (656)
Q Consensus 551 ~~l~~sp~-g~~L~s~~~d 568 (656)
..+.+.|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88999884 4566666554
No 392
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=25.29 E-value=48 Score=23.44 Aligned_cols=13 Identities=46% Similarity=0.899 Sum_probs=11.5
Q ss_pred HHHHHhcCccHHH
Q 006220 11 ATYLKKKGFSEAE 23 (656)
Q Consensus 11 ~~yl~~~~~~~~e 23 (656)
++||++||.+..|
T Consensus 34 ~~FL~sKGLt~~E 46 (54)
T 3ff5_A 34 RAFLKKKGLTDEE 46 (54)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHHcCCCHHH
Confidence 5799999999877
No 393
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.52 E-value=2.8e+02 Score=22.40 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=27.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCeeEEEEecC-CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 517 CNYIATGSSDKTVRLWDVSSGECVRIFIGH-RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 517 ~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
+.+.+.-..||.+.+|+...+..+..-... .+.-..+.+..+|++++... ++.+ +|...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 334444445555555553223332221111 11223466777777666532 3443 676543
No 394
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=24.42 E-value=4.9e+02 Score=25.22 Aligned_cols=145 Identities=10% Similarity=0.024 Sum_probs=83.9
Q ss_pred CCCEEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc-------e
Q 006220 432 LGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-------P 497 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~-------~ 497 (656)
++.+++.++.+|.++-..+..... ...+..+ ..+..+........++..+.+|.+..+....-. -
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 456789999999999997753221 1223333 455555555556678888889998888764321 1
Q ss_pred eEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeeEE--EEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 498 LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GECVR--IFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 498 ~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~~~--~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
++.+. .....|.++....++..+++.+..|.++-.++.. +.-+. .+....+.+..+....+...++..+.
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~ 266 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 266 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEES
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcC
Confidence 22222 1224455555445566788889999988887632 11111 12222245544444334455566666
Q ss_pred CCcEEEEeCC
Q 006220 568 DGTIMMWDLA 577 (656)
Q Consensus 568 dg~I~iwD~~ 577 (656)
+|.+.-+...
T Consensus 267 ~g~~ir~~~~ 276 (307)
T 1zi0_A 267 AGTLVRTRVS 276 (307)
T ss_dssp SCCEEEEEGG
T ss_pred CCcEEEEecc
Confidence 7776666554
No 395
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.99 E-value=62 Score=25.36 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.2
Q ss_pred HHHHHHHhcCccHHHHHH
Q 006220 9 FVATYLKKKGFSEAENAL 26 (656)
Q Consensus 9 ~v~~yl~~~~~~~~e~~~ 26 (656)
-|-+||++.||.+.|...
T Consensus 26 ~VadWLkk~g~~~cd~lv 43 (90)
T 2eap_A 26 SLADYFKKLNYKDCEKAV 43 (90)
T ss_dssp THHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHH
Confidence 377999999999987665
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=20.82 E-value=6e+02 Score=24.88 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=82.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCce------eE--EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-------ce
Q 006220 433 GDFILSSSADTTIRLWSTKLNAN------LV--CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-------QP 497 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~------~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-------~~ 497 (656)
+.+++.++.+|.++...+..... +. .++. ...+..+........++..+.+|.+..+....- +-
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G 184 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG 184 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC
Confidence 56899999999999998753221 11 2222 245555555555667888899999988876432 12
Q ss_pred eEEecC-CCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-------CeeEEEEe---cCCCCeEEEEEcCCCCEEEEE
Q 006220 498 LRIMAG-HLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-------GECVRIFI---GHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 498 ~~~~~~-~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~-------~~~~~~~~---~h~~~i~~l~~sp~g~~L~s~ 565 (656)
++.+.- ....|.++...+.+. .+++.+..|.....++.. ++-+..+. .....+..+....++..++..
T Consensus 185 V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~i 264 (323)
T 1wp5_A 185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQ 264 (323)
T ss_dssp EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEE
Confidence 222221 223455554434444 788888888877776642 22222221 122244433333334556666
Q ss_pred ECCCcEEEEeCC
Q 006220 566 DEDGTIMMWDLA 577 (656)
Q Consensus 566 ~~dg~I~iwD~~ 577 (656)
+..|.+.-..+.
T Consensus 265 t~~g~~ir~~~~ 276 (323)
T 1wp5_A 265 TEKSFIETIKVG 276 (323)
T ss_dssp ETTSCEEEEEGG
T ss_pred eCCCeEEEEEhh
Confidence 677776666654
Done!