BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006224
(656 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 175/682 (25%), Positives = 275/682 (40%), Gaps = 158/682 (23%)
Query: 41 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 100
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 101 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 160
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 161 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 217
+ +W +G+++SD + P + +KAG DL G ++TE
Sbjct: 228 VLREEWGFEGFVMSDW----------YAGDNP----VEQLKAGNDLIMPGKAYQVNTERR 273
Query: 218 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 270
A++ G L EE ++ + + V + PS + + D+
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHA 325
Query: 271 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 328
G+VLL+N LPLS + +A+ G T+ G G T P
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 329 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 359
L+GI Y K + + + + + E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 360 V--AARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVL 411
+ A++ D V+V+ I E DR L + +L+ V++ +G V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 412 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDY 470
VL+ G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
Query: 471 VSRLPMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTT 511
S +P + +PG YR+Y V P FG+G+SYTT
Sbjct: 552 -SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTT 602
Query: 512 FAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAG 571
F Y+ N + +RV + I+NTG AG
Sbjct: 603 FE------------------YSDLNVSFDGETLRVQYR-------------IENTGGRAG 631
Query: 572 THTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRI 629
V+ K P G P ++L F K + G + V L+I V S + + +
Sbjct: 632 KEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--V 689
Query: 630 PMGEHSLHIGDLKHSISLQANL 651
GE+ + +G +I L+
Sbjct: 690 EAGEYEVRVGASSRNIKLKGTF 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 169/649 (26%), Positives = 262/649 (40%), Gaps = 100/649 (15%)
Query: 48 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 107
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 120 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 170
Query: 108 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 167
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 171 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 229
Query: 168 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD-----CGPFL--AIHTEGAV 220
GY+++D +N QH T + D G D + GP L A+++ V
Sbjct: 230 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSN-QV 281
Query: 221 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXG 280
+ + + A+ +T Q + G S GN G
Sbjct: 282 PTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDG 331
Query: 281 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG 324
IVLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 332 IVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWG 384
Query: 325 --------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ 376
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 385 SGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADS 440
Query: 377 -----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 431
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 441 GEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVK 499
Query: 432 AILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPG 489
A++W G P Q G A+ DVL+G +P GKL T P DY +R+ + +
Sbjct: 500 AVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEGLF-- 557
Query: 490 RTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAIR 545
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N
Sbjct: 558 IDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVAT 617
Query: 546 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAGA 604
V VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 618 VT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQ 664
Query: 605 LQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 652
+ +I + LS D + +P G + +G I L + L
Sbjct: 665 SGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 712
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 174/682 (25%), Positives = 274/682 (40%), Gaps = 158/682 (23%)
Query: 41 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 100
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 101 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 160
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 161 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 217
+ +W +G+++S + P + +KAG DL G ++TE
Sbjct: 228 VLREEWGFEGFVMS----------AWYAGDNP----VEQLKAGNDLIMPGKAYQVNTERR 273
Query: 218 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 270
A++ G L EE ++ + + V + PS + + D+
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHA 325
Query: 271 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 328
G+VLL+N LPLS + +A+ G T+ G G T P
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 329 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 359
L+GI Y K + + + + + E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 360 V--AARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVL 411
+ A++ D V+V+ I E DR L + +L+ V++ +G V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 412 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDY 470
VL+ G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY 551
Query: 471 VSRLPMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTT 511
S +P + +PG YR+Y V P FG+G+SYTT
Sbjct: 552 -SDVP--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTT 602
Query: 512 FAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAG 571
F Y+ N + +RV + I+NTG AG
Sbjct: 603 FE------------------YSDLNVSFDGETLRVQYR-------------IENTGGRAG 631
Query: 572 THTLLVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRI 629
V+ K P G P ++L F K + G + V L+I V S + + +
Sbjct: 632 KEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--V 689
Query: 630 PMGEHSLHIGDLKHSISLQANL 651
GE+ + +G +I L+
Sbjct: 690 EAGEYEVRVGASSRNIKLKGTF 711
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 169/649 (26%), Positives = 262/649 (40%), Gaps = 100/649 (15%)
Query: 48 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 107
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 119 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 169
Query: 108 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 167
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 170 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 228
Query: 168 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD-----CGPFL--AIHTEGAV 220
GY+++D +N QH T + D G D + GP L A+++ V
Sbjct: 229 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSN-QV 280
Query: 221 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXG 280
+ + + A+ +T Q + G S GN G
Sbjct: 281 PTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDG 330
Query: 281 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG 324
IVLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 331 IVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWG 383
Query: 325 --------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ 376
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 384 SGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADS 439
Query: 377 -----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 431
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 440 GEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVK 498
Query: 432 AILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPG 489
A++W G P Q G A+ DVL+G +P GKL T P DY +R+ + +
Sbjct: 499 AVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEGLF-- 556
Query: 490 RTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAIR 545
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N
Sbjct: 557 IDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVAT 616
Query: 546 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAGA 604
V VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 617 VT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQ 663
Query: 605 LQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 652
+ +I + LS D + +P G + +G I L + L
Sbjct: 664 SGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 711
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/484 (28%), Positives = 202/484 (41%), Gaps = 57/484 (11%)
Query: 40 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 93
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 94 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 153
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 154 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGLDLDCGP-- 210
D +L + + Q DG++VSD +N + + E A AI AG+D+ P
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEH 325
Query: 211 FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRDVCTP 267
F A + T V+ G++ E +N A+ + ++R G+F +PSA+P P+ +
Sbjct: 326 FEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAA 384
Query: 268 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 327
+VLLKN+ LP+ VA G N+ I AG G++
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG---GWSV 435
Query: 328 PLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEF 382
QG A G I +E + V ++ + + AE+
Sbjct: 436 SWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEPYAEW 495
Query: 383 IDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVG 437
LL Q E +A KA PVV V + G P+ V+ N W+
Sbjct: 496 FGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL- 552
Query: 438 YPGQAGGAAIADVLF------GRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPG 489
PG + G +ADVL + + GKL +W Y + L D A GY G
Sbjct: 553 -PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDPLFAYGY-G 609
Query: 490 RTYR 493
TY+
Sbjct: 610 LTYQ 613
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/484 (28%), Positives = 202/484 (41%), Gaps = 57/484 (11%)
Query: 40 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 93
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 94 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 153
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 154 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGLDLDCGP-- 210
D +L + + Q DG++VSD +N + + E A AI AG+D+ P
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEH 325
Query: 211 FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRDVCTP 267
F A + T V+ G++ E +N A+ + ++R G+F +PSA+P P+ +
Sbjct: 326 FEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAA 384
Query: 268 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 327
+VLLKN+ LP+ VA G N+ I AG G++
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG---GWSV 435
Query: 328 PLQGISRYAKTIHQA-----GCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEF 382
QG A G I +E + V ++ + + AE+
Sbjct: 436 SWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEPYAEW 495
Query: 383 IDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVG 437
LL Q E +A KA PVV V + G P+ V+ N W+
Sbjct: 496 FGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL- 552
Query: 438 YPGQAGGAAIADVLF------GRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYPG 489
PG + G +ADVL + + GKL +W Y + L D A GY G
Sbjct: 553 -PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDPLFAYGY-G 609
Query: 490 RTYR 493
TY+
Sbjct: 610 LTYQ 613
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 341 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 400
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 401 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 460
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 461 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 513
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 514 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 572
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 573 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 630
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 631 MGEHSLHIG 639
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 145/341 (42%), Gaps = 48/341 (14%)
Query: 42 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 101
P N+ R P GRG E+ EDP L G +S V+G+QG +AA KH+ DL++
Sbjct: 101 PTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED 155
Query: 102 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 161
R+ N+ VS++ L + Y PF+ V +M +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 162 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVR 221
+ +W+ DG ++SD + T YT A AIK GLD++ T V
Sbjct: 212 LRDEWKWDGMLMSDW------FGT--YT------TAAAIKNGLDIEFPGPTRWRTRALVS 257
Query: 222 GGL-----LREEDVN-------LALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXX 269
L + EDV+ + + + + G+ + P + D+
Sbjct: 258 HSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRK-- 315
Query: 270 XXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGY-TTP 328
IVLLKN LPL + + VIGPN+ + G A + Y +P
Sbjct: 316 ------IAADSIVLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSP 367
Query: 329 LQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQADA 367
+GI ++ K + + G + G + AA+ ADA
Sbjct: 368 YEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADA 408
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 47/309 (15%)
Query: 341 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 400
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 401 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 460
V KA+ V+V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPN-TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 461 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 513
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 514 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 572
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 573 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 630
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 631 MGEHSLHIG 639
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 140/341 (41%), Gaps = 48/341 (14%)
Query: 42 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 101
P N R P GRG E+ EDP L G +S V+G QG +AA KH+ DL++
Sbjct: 101 PTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEG-----IAATVKHFVCNDLED 155
Query: 102 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 161
R+ N+ VS++ L + Y PF+ V + +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 162 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVR 221
+ +W+ DG + SD + T YT A AIK GLD++ T V
Sbjct: 212 LRDEWKWDGXLXSDW------FGT--YT------TAAAIKNGLDIEFPGPTRWRTRALVS 257
Query: 222 GGL-----LREEDVN-------LALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXX 269
L + EDV+ + + + + G+ + P + D+
Sbjct: 258 HSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRK-- 315
Query: 270 XXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGY-TTP 328
IVLLKN LPL + + VIGPN+ + G A Y +P
Sbjct: 316 ------IAADSIVLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASXNSYYVVSP 367
Query: 329 LQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQADA 367
+GI ++ K + + G + G + AA+ ADA
Sbjct: 368 YEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADA 408
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 134/312 (42%), Gaps = 49/312 (15%)
Query: 42 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 101
P +N R P GR ET EDP+++ + A + ++G+QG + KH+ A + +N
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQG-----AGLMTTAKHFAANNQEN 205
Query: 102 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 161
+R+ NA V +Q L + F+A G AS MC+YN +NGKP+C + ++L N
Sbjct: 206 ----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSCGNDELLNNV 260
Query: 162 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG------------ 209
+ QW G+++SD + TP DAI GLD + G
Sbjct: 261 LRTQWGFQGWVMSD------------WLATP---GTDAITKGLDQEMGVELPGDVPKGEP 305
Query: 210 ----PFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVC 265
F + AV G + E V + + + G+ P+ +P RD
Sbjct: 306 SPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRP-----ERDKA 360
Query: 266 TPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNS-DVTVTMIGNYAGVACG 324
G VLL+N + LPL+ ++AVIGP + D VT +G+ V
Sbjct: 361 --GAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDS 418
Query: 325 YTTPLQGISRYA 336
PL I A
Sbjct: 419 AAAPLDTIKARA 430
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 123/273 (45%), Gaps = 68/273 (24%)
Query: 361 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 420
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 421 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYP----QDYVSRLPM 476
+ + + A+L + YPGQAG A A +L+G NP GKL + +P Q V+ P
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPT 673
Query: 477 TDMRMRAARGYPG----RTYR---------FYKGPV--VFPFGHGMSYTTFAHTLSKAPN 521
+ YPG +TYR F K V +FPFGHG+SYT+F +
Sbjct: 674 S---------YPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQS------ 718
Query: 522 QFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVF--A 579
A V T+ L + V ++N+G AG + + A
Sbjct: 719 ---------------------APTVVRTSTG---GLKVTVTVRNSGKRAGQEVVQAYLGA 754
Query: 580 KPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 612
P K+L+G+ KV + AG ++V +++
Sbjct: 755 SPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNV 787
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 124/491 (25%), Positives = 199/491 (40%), Gaps = 99/491 (20%)
Query: 36 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 83
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 84 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 143
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 144 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG 203
+ NG A+ D++ + + G+++SD + + + T + +I AG
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI--TTPAGSDYSYSVKASILAG 311
Query: 204 LDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-AQ 254
LD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P+ A+
Sbjct: 312 LDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE 370
Query: 255 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIGPNSD 309
G RD+ +VLLKN A LPL + + V G ++D
Sbjct: 371 QLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAGSHAD 421
Query: 310 VTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATV 369
G CG TI G G G ++ A + A + V
Sbjct: 422 --------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVV 462
Query: 370 LVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAKASRG 407
++ +AEF+ G L +P V V R
Sbjct: 463 FA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVR- 517
Query: 408 PVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW 465
VL+ G PV V A +D + A L PG G + D LFG G+LP TW
Sbjct: 518 -CATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTW 571
Query: 466 YPQDYVSRLPM 476
+ V +LPM
Sbjct: 572 FKS--VDQLPM 580
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 199/491 (40%), Gaps = 99/491 (20%)
Query: 36 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 83
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 84 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 143
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 144 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG 203
+ NG A+ D++ + + G+++SD + G+ T + +I AG
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWE--GIDRITTPAGSDYSYSVKASILAG 311
Query: 204 LDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-AQ 254
LD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P+ A+
Sbjct: 312 LDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE 370
Query: 255 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN-----SARTLPLSTLRHHTVAVIGPNSD 309
G RD+ +VLLKN A LPL + + V G ++D
Sbjct: 371 QLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPLPK-KAPKILVAGSHAD 421
Query: 310 VTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATV 369
G CG TI G G G ++ A + A + V
Sbjct: 422 --------NLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVV 462
Query: 370 LVMGLDQSIEAEFIDRAG----------------------LLLPGRQQELVSRVAKASRG 407
++ +AEF+ G L +P V V R
Sbjct: 463 FA----ENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVR- 517
Query: 408 PVVLVLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW 465
VL+ G PV V A +D + A L PG G + D LFG G+LP TW
Sbjct: 518 -CATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTW 571
Query: 466 YPQDYVSRLPM 476
+ V +LPM
Sbjct: 572 FKS--VDQLPM 580
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 76 GLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQ--DLEDTYNVPFKACVVE 133
L G+T R VA C KH+ + + D + RVSK +L+ PF+A + E
Sbjct: 164 ALAGHT--REGVAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPE 218
Query: 134 G-KVASVMCSYNQVNGK-PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 191
+ + Y+ ++ + P P IL + +W DG IV+ DS G +Y R
Sbjct: 219 TPAIXTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVT--DSXGXQAIDANYGRG 276
Query: 192 PEEAAADAIKAGLDL 206
EAA A++AG DL
Sbjct: 277 --EAAVRALRAGADL 289
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 38 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 96
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 171 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 225
Query: 97 Y---DLDNWNGVDRY-HFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQ------- 145
+ D+D+ G+ H R+ + +L PF+ + G VM ++ Q
Sbjct: 226 HGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTAHVQFPAFDDT 279
Query: 146 -----VNGKPTCADPDILKNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAA 196
++G + K + G R +G IV+D ++ + + H+ + EEA
Sbjct: 280 TYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIAD--HFGQ--EEAV 335
Query: 197 ADAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMR 243
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 336 VMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIK 395
Query: 244 LGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 301
GM+ S + + V + + +LKN TLP + +
Sbjct: 396 RGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRI 455
Query: 302 AVIGPNSDVTVTM 314
++ P + T ++
Sbjct: 456 LIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 38 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 96
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 175 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 229
Query: 97 Y-DLDNWNGVDRYHFNARVS--KQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG----- 148
+ D D VD ++ VS ++ L + PF+ + G VM ++ Q
Sbjct: 230 HGDTD----VDSHYGLPLVSHGQERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTT 284
Query: 149 -KPTCADPDIL------KNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAAA 197
K DIL K + G R +G IV++ ++ + + H+ + EEA
Sbjct: 285 YKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVV 340
Query: 198 DAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMRL 244
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 341 MAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 400
Query: 245 GMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVA 302
GM+ S + + V + + +LKN TLP + +
Sbjct: 401 GMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRIL 460
Query: 303 VIGPNSDVTVTM 314
++ P + T ++
Sbjct: 461 IVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 38 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 96
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 145 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 199
Query: 97 Y---DLDNWNGVDRY-HFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG---- 148
+ D+D+ G+ H R+ + +L PF+ + G VM ++ Q
Sbjct: 200 HGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTAHVQFPAFDDT 253
Query: 149 --KPTCADPDIL------KNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAA 196
K DIL K + G R +G IV++ ++ + + H+ + EEA
Sbjct: 254 TYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAV 309
Query: 197 ADAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMR 243
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 310 VMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIK 369
Query: 244 LGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 301
GM+ S + + V + + +LKN TLP + +
Sbjct: 370 RGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRI 429
Query: 302 AVIGPNSDVTVTM 314
++ P + T ++
Sbjct: 430 LIVAPYEEQTASI 442
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 627 RRIPMGEHSLHIGDLKHSISLQANL 651
RRI +GE SL +GD HS S + ++
Sbjct: 94 RRIAVGEGSLSVGDFSHSFSFEGSV 118
>pdb|3P11|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 522
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 75 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 131
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 132 VEGKVASVMCS 142
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 75 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 131
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 132 VEGKVASVMCS 142
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,648,023
Number of Sequences: 62578
Number of extensions: 897457
Number of successful extensions: 1736
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 32
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)