Query 006224
Match_columns 656
No_of_seqs 324 out of 1876
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 20:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 4E-148 1E-152 1283.7 61.8 641 5-649 111-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-135 6E-140 1180.9 60.8 596 5-646 117-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 8.1E-60 1.7E-64 508.6 24.6 281 4-319 79-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.4E-53 5.1E-58 446.9 18.7 218 5-240 69-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 6.7E-45 1.5E-49 385.6 21.5 216 4-244 74-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 3.6E-40 7.7E-45 333.9 15.4 215 281-511 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 7.8E-21 1.7E-25 156.7 6.3 69 573-642 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.2 0.012 2.5E-07 51.0 6.3 61 556-639 20-82 (101)
9 PF12690 BsuPI: Intracellular 95.4 0.1 2.3E-06 44.1 8.6 67 557-637 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 94.3 0.16 3.6E-06 42.2 6.9 65 556-639 6-74 (78)
11 PF14874 PapD-like: Flagellar- 90.6 1.7 3.8E-05 37.8 8.7 61 556-622 21-81 (102)
12 cd00407 Urease_beta Urease bet 89.8 0.62 1.3E-05 40.5 4.9 51 557-611 20-82 (101)
13 TIGR00192 urease_beta urease, 88.8 0.78 1.7E-05 39.9 4.8 51 557-611 20-82 (101)
14 PRK13203 ureB urease subunit b 87.8 0.92 2E-05 39.5 4.6 51 557-611 20-82 (102)
15 PRK13202 ureB urease subunit b 86.7 1.3 2.8E-05 38.7 4.9 52 557-612 21-84 (104)
16 PF00699 Urease_beta: Urease b 86.0 1.2 2.6E-05 38.7 4.3 52 556-611 18-81 (100)
17 COG1470 Predicted membrane pro 84.0 2.9 6.2E-05 46.1 7.1 74 556-643 285-361 (513)
18 PRK13198 ureB urease subunit b 83.7 2 4.4E-05 40.0 5.0 52 557-612 48-111 (158)
19 PRK13201 ureB urease subunit b 83.6 1.9 4E-05 39.4 4.6 52 557-612 20-83 (136)
20 PRK13204 ureB urease subunit b 83.4 2.2 4.8E-05 39.8 5.1 52 557-612 43-106 (159)
21 COG0486 ThdF Predicted GTPase 83.2 19 0.00041 40.1 13.1 96 130-244 60-171 (454)
22 PRK13205 ureB urease subunit b 81.2 2.7 5.8E-05 39.2 4.8 51 557-611 20-82 (162)
23 COG0832 UreB Urea amidohydrola 80.0 2.9 6.4E-05 36.2 4.3 53 556-612 19-83 (106)
24 PF13473 Cupredoxin_1: Cupredo 79.6 5.5 0.00012 34.9 6.3 40 558-613 44-83 (104)
25 PF05506 DUF756: Domain of unk 78.3 8.8 0.00019 32.7 6.9 53 558-622 21-73 (89)
26 PF07610 DUF1573: Protein of u 78.0 4.9 0.00011 29.7 4.6 43 560-611 1-44 (45)
27 PF07385 DUF1498: Protein of u 76.4 3.3 7.1E-05 41.4 4.1 58 562-625 111-179 (225)
28 COG1470 Predicted membrane pro 75.9 11 0.00024 41.7 8.3 70 556-641 398-468 (513)
29 PRK13192 bifunctional urease s 75.0 4.3 9.4E-05 39.8 4.5 51 557-611 129-191 (208)
30 PF00345 PapD_N: Pili and flag 73.6 7.8 0.00017 34.9 5.7 54 558-614 17-73 (122)
31 PF04744 Monooxygenase_B: Mono 69.7 8.9 0.00019 41.2 5.7 54 556-613 264-334 (381)
32 PRK13986 urease subunit alpha; 68.7 8.1 0.00018 38.4 4.8 52 557-612 125-188 (225)
33 PF06030 DUF916: Bacterial pro 64.4 25 0.00054 32.0 6.9 57 556-614 28-103 (121)
34 PF14796 AP3B1_C: Clathrin-ada 57.8 26 0.00057 33.0 5.9 54 556-614 86-140 (145)
35 TIGR01759 MalateDH-SF1 malate 57.3 11 0.00023 40.5 3.7 60 359-422 74-135 (323)
36 PF09624 DUF2393: Protein of u 56.4 29 0.00063 32.5 6.1 59 556-614 63-133 (149)
37 PF14016 DUF4232: Protein of u 55.5 33 0.00071 31.4 6.2 59 556-614 19-82 (131)
38 PF00927 Transglut_C: Transglu 55.4 17 0.00037 31.9 4.2 58 556-614 16-76 (107)
39 TIGR01756 LDH_protist lactate 48.4 15 0.00033 39.2 3.1 57 360-422 56-116 (313)
40 TIGR03079 CH4_NH3mon_ox_B meth 48.2 43 0.00094 36.0 6.3 54 556-614 283-354 (399)
41 COG1160 Predicted GTPases [Gen 47.8 50 0.0011 36.7 7.0 47 356-415 75-121 (444)
42 cd00704 MDH Malate dehydrogena 45.4 21 0.00046 38.2 3.6 57 359-421 71-131 (323)
43 PLN00135 malate dehydrogenase 45.1 22 0.00047 37.9 3.6 58 359-422 53-114 (309)
44 PRK05442 malate dehydrogenase; 44.8 23 0.0005 38.0 3.8 58 359-422 75-136 (326)
45 PF06858 NOG1: Nucleolar GTP-b 44.4 64 0.0014 25.5 5.1 44 362-414 11-55 (58)
46 PF05753 TRAP_beta: Translocon 44.0 96 0.0021 30.3 7.6 82 556-642 39-127 (181)
47 cd03708 GTPBP_III Domain III o 43.9 1.3E+02 0.0029 24.9 7.8 76 556-639 5-82 (87)
48 cd01338 MDH_choloroplast_like 42.4 25 0.00054 37.7 3.6 58 359-422 73-134 (322)
49 cd00938 HisRS_RNA HisRS_RNA bi 42.1 48 0.001 24.7 3.9 31 215-245 12-42 (45)
50 cd05290 LDH_3 A subgroup of L- 41.8 27 0.00059 37.1 3.8 59 359-422 63-125 (307)
51 PF00056 Ldh_1_N: lactate/mala 40.4 10 0.00022 35.4 0.2 55 360-421 65-123 (141)
52 cd01336 MDH_cytoplasmic_cytoso 39.4 29 0.00063 37.2 3.6 58 360-421 74-133 (325)
53 PF06280 DUF1034: Fn3-like dom 39.1 61 0.0013 28.7 5.1 59 556-614 9-80 (112)
54 PLN02303 urease 38.8 42 0.00091 40.3 5.0 51 557-611 150-212 (837)
55 TIGR01757 Malate-DH_plant mala 38.4 22 0.00047 39.1 2.5 58 359-422 115-176 (387)
56 TIGR01758 MDH_euk_cyt malate d 37.7 31 0.00067 37.0 3.5 57 360-422 71-131 (324)
57 PF02102 Peptidase_M35: Deuter 36.1 12 0.00026 40.6 0.0 63 557-619 40-121 (359)
58 TIGR03096 nitroso_cyanin nitro 35.4 1.1E+02 0.0024 28.5 6.1 16 599-614 95-110 (135)
59 PF06205 GT36_AF: Glycosyltran 35.0 27 0.00058 30.0 2.0 26 587-614 59-84 (90)
60 PF06510 DUF1102: Protein of u 34.9 1.7E+02 0.0038 27.4 7.3 64 546-614 59-124 (146)
61 TIGR03352 VI_chp_3 type VI sec 34.5 99 0.0022 29.1 5.9 24 591-614 81-104 (146)
62 COG0039 Mdh Malate/lactate deh 34.4 39 0.00085 36.0 3.5 59 359-422 64-124 (313)
63 TIGR01772 MDH_euk_gproteo mala 34.1 50 0.0011 35.2 4.3 55 360-421 63-121 (312)
64 PRK00286 xseA exodeoxyribonucl 33.3 1.6E+02 0.0034 32.9 8.3 58 353-422 179-238 (438)
65 PF10087 DUF2325: Uncharacteri 33.2 95 0.0021 26.7 5.2 40 358-412 42-81 (97)
66 PRK13533 7-cyano-7-deazaguanin 33.1 56 0.0012 37.1 4.7 49 160-209 73-121 (487)
67 PRK05086 malate dehydrogenase; 32.3 39 0.00085 35.9 3.2 56 360-421 65-123 (312)
68 cd06557 KPHMT-like Ketopantoat 32.3 3.5E+02 0.0077 27.9 10.0 17 164-180 29-45 (254)
69 PF08530 PepX_C: X-Pro dipepti 32.1 87 0.0019 31.1 5.5 56 556-614 97-162 (218)
70 cd01857 HSR1_MMR1 HSR1/MMR1. 31.9 1E+02 0.0022 28.2 5.6 18 356-373 3-20 (141)
71 COG1361 S-layer domain [Cell e 31.6 1.1E+02 0.0024 34.8 6.8 58 556-614 168-226 (500)
72 TIGR00237 xseA exodeoxyribonuc 31.5 1.9E+02 0.0042 32.3 8.6 57 354-422 174-233 (432)
73 cd00300 LDH_like L-lactate deh 31.2 39 0.00084 35.7 2.9 58 360-422 62-121 (300)
74 TIGR01763 MalateDH_bact malate 31.1 51 0.0011 34.9 3.8 54 362-422 67-124 (305)
75 PLN00112 malate dehydrogenase 31.1 33 0.00071 38.4 2.4 58 359-422 171-232 (444)
76 PLN02602 lactate dehydrogenase 31.1 41 0.0009 36.4 3.1 56 360-422 101-160 (350)
77 cd01337 MDH_glyoxysomal_mitoch 31.0 52 0.0011 35.0 3.8 55 360-421 64-122 (310)
78 cd05294 LDH-like_MDH_nadp A la 29.4 58 0.0013 34.6 3.9 57 360-421 68-126 (309)
79 PRK13211 N-acetylglucosamine-b 28.9 1.6E+02 0.0034 33.5 7.2 48 556-614 328-375 (478)
80 PRK09918 putative fimbrial cha 27.3 1.8E+02 0.0039 29.5 6.9 52 558-613 41-93 (230)
81 PRK13556 azoreductase; Provisi 26.3 1.5E+02 0.0034 29.2 6.1 37 356-403 81-117 (208)
82 PRK13555 azoreductase; Provisi 26.3 1.4E+02 0.0031 29.7 5.8 38 355-403 80-117 (208)
83 COG2430 Uncharacterized conser 26.1 1.6E+02 0.0034 29.7 5.8 65 558-624 16-99 (236)
84 PF11906 DUF3426: Protein of u 25.9 2.6E+02 0.0056 25.9 7.2 59 556-614 69-136 (149)
85 PF00703 Glyco_hydro_2: Glycos 25.7 2.4E+02 0.0052 23.8 6.6 63 556-623 19-81 (110)
86 TIGR01771 L-LDH-NAD L-lactate 25.7 67 0.0015 34.0 3.5 55 360-421 60-118 (299)
87 TIGR01451 B_ant_repeat conserv 25.1 88 0.0019 23.9 3.1 21 556-577 13-33 (53)
88 PF11611 DUF4352: Domain of un 24.8 82 0.0018 27.8 3.5 59 556-614 37-101 (123)
89 COG1182 AcpD Acyl carrier prot 24.6 2.1E+02 0.0046 28.5 6.4 51 357-421 80-130 (202)
90 COG2003 RadC DNA repair protei 24.2 49 0.0011 33.4 2.0 100 61-179 104-210 (224)
91 PF01926 MMR_HSR1: 50S ribosom 23.8 1.4E+02 0.003 26.0 4.8 45 356-414 71-115 (116)
92 PF01345 DUF11: Domain of unkn 23.8 85 0.0018 25.5 3.1 18 556-573 42-59 (76)
93 cd05291 HicDH_like L-2-hydroxy 23.7 84 0.0018 33.2 3.8 55 361-422 65-123 (306)
94 PRK15249 fimbrial chaperone pr 23.5 1.6E+02 0.0034 30.5 5.6 54 558-613 45-103 (253)
95 PF11614 FixG_C: IG-like fold 23.1 1.7E+02 0.0038 25.9 5.3 50 558-614 34-84 (118)
96 PF00009 GTP_EFTU: Elongation 23.1 3E+02 0.0066 26.3 7.4 48 355-415 84-131 (188)
97 PF09851 SHOCT: Short C-termin 23.0 1.5E+02 0.0033 20.0 3.6 25 214-238 6-30 (31)
98 PF02450 LCAT: Lecithin:choles 22.9 1E+02 0.0022 33.8 4.5 61 395-455 107-175 (389)
99 PRK09926 putative chaperone pr 22.7 1.7E+02 0.0037 30.0 5.7 55 558-614 42-100 (246)
100 PHA00691 hypothetical protein 22.2 89 0.0019 24.3 2.6 20 623-642 11-32 (68)
101 PTZ00325 malate dehydrogenase; 21.6 77 0.0017 33.9 3.0 57 359-421 71-130 (321)
102 PF07495 Y_Y_Y: Y_Y_Y domain; 21.2 1.2E+02 0.0027 23.5 3.5 12 629-640 36-47 (66)
103 PRK00066 ldh L-lactate dehydro 21.1 81 0.0018 33.6 3.1 55 360-421 69-127 (315)
104 PF09373 PMBR: Pseudomurein-bi 20.7 1.1E+02 0.0025 20.9 2.7 25 222-246 2-26 (33)
105 PF13157 DUF3992: Protein of u 20.6 4.1E+02 0.0088 23.1 6.6 67 556-637 25-91 (92)
106 cd05293 LDH_1 A subgroup of L- 20.5 89 0.0019 33.3 3.2 54 361-421 68-125 (312)
107 PRK13534 7-cyano-7-deazaguanin 20.1 1.2E+02 0.0025 35.9 4.3 49 160-209 72-120 (639)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=4.5e-148 Score=1283.67 Aligned_cols=641 Identities=49% Similarity=0.928 Sum_probs=556.8
Q ss_pred CCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 006224 5 LPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRG 76 (656)
Q Consensus 5 ~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~G 76 (656)
.|.||+++++| +++|+++|+|+|++++.|.+|+++|+|++||+|||||||++|||||||+|+++|++|||+|
T Consensus 111 aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~G 190 (779)
T PLN03080 111 ATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKG 190 (779)
T ss_pred ceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHH
Confidence 58899999987 9999999999999965543356668999999999999999999999999999999999999
Q ss_pred HccCC---------CCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccccCC
Q 006224 77 LQGNT---------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 147 (656)
Q Consensus 77 ~Q~~~---------~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~~vn 147 (656)
+|+.+ .++.+|+||+||||||+++.+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++|
T Consensus 191 lQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vn 270 (779)
T PLN03080 191 FQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVN 270 (779)
T ss_pred hcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcC
Confidence 99852 133459999999999999877777888889999999999999999999999998889999999999
Q ss_pred CcccccCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCchhhHHHHHHHHHCCCCCH
Q 006224 148 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLRE 227 (656)
Q Consensus 148 g~pa~~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~~~~~~l~~av~~g~v~~ 227 (656)
|+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+||+|...+.+.|.+||++|+|++
T Consensus 271 G~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e 349 (779)
T PLN03080 271 GVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQE 349 (779)
T ss_pred CccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCH
Confidence 9999999999986 999999999999999999999988888778999999999999999998877889999999999999
Q ss_pred HHHHHHhhhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcceecccCCCCCCCcCCCCcEEEEEccC
Q 006224 228 EDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPN 307 (656)
Q Consensus 228 ~~ld~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~~~~la~~~A~eSiVLLKN~~~~LPL~~~~~~kIaviGp~ 307 (656)
++||+||+|||++|+++|+|+.+|...++.+.....+++++|+++|+++|++|||||||++++|||++.+.++|+||||+
T Consensus 350 ~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~ 429 (779)
T PLN03080 350 EDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPM 429 (779)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCC
Confidence 99999999999999999999944433334444456678999999999999999999999999999987656799999999
Q ss_pred CccccccccccCCCCCccCCHHHHHHHHh-chhhcccCCccccCCcccHHHHHHHhhcCCEEEEEEeCCCccccccCCCC
Q 006224 308 SDVTVTMIGNYAGVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRA 386 (656)
Q Consensus 308 a~~~~~~~G~~~g~~~~~~t~le~l~~~~-~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~ 386 (656)
|+....++|+|.+.+++.++++++|+++. .+.|..||....+.+...+++|+++|++||+||||+|.+...++|+.||.
T Consensus 430 A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~ 509 (779)
T PLN03080 430 ANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRV 509 (779)
T ss_pred CCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcc
Confidence 99988888889888888999999999975 46788888655444456788999999999999999999988999999999
Q ss_pred CccCChhHHHHHHHHHHhcCCCEEEEEecCcceeccccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCcccCcccC
Q 006224 387 GLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWY 466 (656)
Q Consensus 387 ~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~ 466 (656)
+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|+||||||||++|||||||+|||
T Consensus 510 ~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~ 589 (779)
T PLN03080 510 SLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWY 589 (779)
T ss_pred cccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeec
Confidence 99999999999999998777799999999999999998766789999999999999999999999999999999999998
Q ss_pred CccccCCCCCccccccc--cCCCCCCcccccCCCcccccCcCCCCCCceecCCccCCCcccccccccccccccccc----
Q 006224 467 PQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTIS---- 540 (656)
Q Consensus 467 p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~---- 540 (656)
|+++ .++|++|+++++ ..+|++++||||+.+|+||||||||||||+||+++++...+....... +.......
T Consensus 590 p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 667 (779)
T PLN03080 590 PESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQ-DSISRKPLLQRR 667 (779)
T ss_pred cccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccc-cccccccccccc
Confidence 9988 789998887754 356899999999999999999999999999999975431111100000 00000000
Q ss_pred --cccccccc-ccCCCCccEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCchhhhhcccccccCCCCeEEEEEEecCCC
Q 006224 541 --SNAIRVAH-TNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCK 616 (656)
Q Consensus 541 --~~~~~~~~-~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~ 616 (656)
....++.. ..|+.. .++|+|+|||||+++|+||||||+++|.+. .+|+|||+||+||+|+||||++|+|+|++++
T Consensus 668 ~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~ 746 (779)
T PLN03080 668 DELDYVQIEDIASCESL-RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCK 746 (779)
T ss_pred cccccccccccccCCCc-eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchH
Confidence 00000000 112222 489999999999999999999999999875 8999999999999999999999999999657
Q ss_pred CceEEeCCCCEEecCeEEEEEEecCCceeEEEE
Q 006224 617 HLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 649 (656)
Q Consensus 617 ~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~ 649 (656)
+|++||++++|++|+|+|+|+||.++|++++++
T Consensus 747 ~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 747 HLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred HceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999999999999999999998864
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.9e-135 Score=1180.89 Aligned_cols=596 Identities=30% Similarity=0.474 Sum_probs=513.3
Q ss_pred CCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 006224 5 LPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRG 76 (656)
Q Consensus 5 ~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~G 76 (656)
.|.||++++|| +++|+++|+|+|++ |+ +++| ||++||+|||+|||++|||||||+++++|++|+|+|
T Consensus 117 ~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~---Gi-n~~l-aPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~G 191 (765)
T PRK15098 117 RTVFPISLGLASSWDLDAVATVGRVSAYEAADD---GL-NMTW-APMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKA 191 (765)
T ss_pred cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC-CEEe-eCcccccCCCCccccccCcCCCHHHHHHHHHHHHHH
Confidence 37899999987 89999999999999 77 6665 999999999999999999999999999999999999
Q ss_pred HccCCC-CCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccccCCCcccccCH
Q 006224 77 LQGNTG-SRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADP 155 (656)
Q Consensus 77 ~Q~~~~-~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~ 155 (656)
||+.+. ...||++|+|||||||..+ .+|....+++++++|+|+||+||+++|++| +++||||||.+||+|||.|+
T Consensus 192 lQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~ 267 (765)
T PRK15098 192 MQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNTVDMSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDS 267 (765)
T ss_pred HcCCCCCCCCCEEEECcEEeCCCCcc---cCccCccCcCCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCH
Confidence 998631 2347999999999999532 245555678999999999999999999877 89999999999999999999
Q ss_pred HHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCchh-hHHHHHHHHHCCCCCHHHHHHHh
Q 006224 156 DILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF-LAIHTEGAVRGGLLREEDVNLAL 234 (656)
Q Consensus 156 ~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~~-~~~~l~~av~~g~v~~~~ld~av 234 (656)
++|++|||+||||+|+|||||++|..+.. |++..+.+|++++||+||+||+|.+. +.+.|.++|++|+|++++||+||
T Consensus 268 ~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av 346 (765)
T PRK15098 268 WLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAV 346 (765)
T ss_pred HHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHH
Confidence 99999999999999999999999998874 67777889999999999999998654 44679999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCC--C-CCCCCCCCHHHHHHHHHHHhhcceecccCCCCCCCcCCCCcEEEEEccCCccc
Q 006224 235 AYTITVQMRLGMFDGEPSAQPFG--N-LGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVT 311 (656)
Q Consensus 235 ~Ril~~k~~~Glf~~~p~~~~~~--~-~~~~~~~~~~~~~la~~~A~eSiVLLKN~~~~LPL~~~~~~kIaviGp~a~~~ 311 (656)
+|||++|+++|+|+ +|+...-. . .....+.+++|+++|+++|++|||||||++++|||++. +||+||||+++..
T Consensus 347 ~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~ 423 (765)
T PRK15098 347 RHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQ 423 (765)
T ss_pred HHHHHHHHHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccc
Confidence 99999999999999 66532100 0 01122457899999999999999999999999999753 6999999999987
Q ss_pred cccccccC--CCCCccCCHHHHHHHHh----chhhcccCCcccc-------------------CCcccHHHHHHHhhcCC
Q 006224 312 VTMIGNYA--GVACGYTTPLQGISRYA----KTIHQAGCFGVAC-------------------NGNQLIGAAEVAARQAD 366 (656)
Q Consensus 312 ~~~~G~~~--g~~~~~~t~le~l~~~~----~~~y~~g~~~~~~-------------------~~~~~~~~a~~~a~~aD 366 (656)
..+.|+|+ +.+.+.++++++|++.. .+.|..||..... .....+++|+++|++||
T Consensus 424 ~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD 503 (765)
T PRK15098 424 RDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQAD 503 (765)
T ss_pred cccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCC
Confidence 76677774 56778899999999974 3568778742110 11345788999999999
Q ss_pred EEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceeccccccCCCccEEEEecCCCchhHHH
Q 006224 367 ATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAA 446 (656)
Q Consensus 367 ~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~A 446 (656)
++|||+|.+...++|+.||.+|.||+.|.+||++|++. +||+|||+++|+||+|+|+. ++++|||++|+||+++|+|
T Consensus 504 ~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~A 580 (765)
T PRK15098 504 VVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNA 580 (765)
T ss_pred EEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHH
Confidence 99999999988899999999999999999999999875 68999999999999999873 4899999999999999999
Q ss_pred HHHHHhCCCCCCcccCcccCCccccCCCCCccccccccCCC-----CCCcccccCC--CcccccCcCCCCCCceecCCcc
Q 006224 447 IADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGY-----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKA 519 (656)
Q Consensus 447 lAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~-----~~~~Yr~~~~--~~~ypFG~GLSYTtF~ys~l~~ 519 (656)
+||||||++|||||||+|| |++. +++|.++........| .+.+||||+. +|+||||||||||+|+||++++
T Consensus 581 iAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v 658 (765)
T PRK15098 581 IADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKL 658 (765)
T ss_pred HHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEe
Confidence 9999999999999999997 8887 7888754221111112 1235899985 5999999999999999999986
Q ss_pred CCCccccccccccccccccccccccccccccCCCCccEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCchhhhhccccc
Q 006224 520 PNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV 598 (656)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv 598 (656)
.+ .. .. .+. +++|+|+|||||+++|+||||||+++|.++ .+|.|||+||+||
T Consensus 659 ~~--------------------~~--~~----~~~-~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv 711 (765)
T PRK15098 659 SS--------------------PT--MK----RDG-KVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKI 711 (765)
T ss_pred cc--------------------cc--cc----CCC-eEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeE
Confidence 42 00 11 112 699999999999999999999999999876 8999999999999
Q ss_pred ccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEEEEEecCCceeE
Q 006224 599 HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSIS 646 (656)
Q Consensus 599 ~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~ 646 (656)
+|+|||+++|+|+|+. ++|++||++++|++|+|+|+|+||.||++++
T Consensus 712 ~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~ 758 (765)
T PRK15098 712 MLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK 758 (765)
T ss_pred eECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc
Confidence 9999999999999998 8999999999999999999999999999886
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-60 Score=508.56 Aligned_cols=281 Identities=30% Similarity=0.508 Sum_probs=247.2
Q ss_pred cCCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccc-cCCCHHHHHHHHHHHH
Q 006224 4 NLPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYV 74 (656)
Q Consensus 4 ~~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~-fgeDP~l~~~~a~a~v 74 (656)
++|.||++++|| +++|+++|+|+|++ || +++| |||+||.|||+|||.+|+ |||||++++.|+.|||
T Consensus 79 ~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~---Gi-n~~f-APvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i 153 (397)
T COG1472 79 GFTVFPAALALAATWDPELARKVGRVIAKELRAL---GI-NLDF-APVLDVARDPRWGRIGERSFGEDPELVALLAAAFI 153 (397)
T ss_pred CCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc---CC-Cccc-cceeecccCCCcCccccccCCCCHHHHHHHHHHHH
Confidence 489999999987 99999999999999 77 6766 999999999999999888 9999999999999999
Q ss_pred HHHccCCCCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCC--cceEeeccccCCCcccc
Q 006224 75 RGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTC 152 (656)
Q Consensus 75 ~G~Q~~~~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~--~~~vM~sy~~vng~pa~ 152 (656)
+|||+. ||++|+|||||||..+ .+++..++.++++.|+|+|+.||+.+++.+. ++++|++||++||.|||
T Consensus 154 ~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat 225 (397)
T COG1472 154 KGLQGA-----GVAATIKHFPGHGAVE---GDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPAT 225 (397)
T ss_pred HHHhhC-----CceeeeccccCCCCCc---CCcccccCCCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCccc
Confidence 999998 8999999999998543 3444333789999999999999999999986 89999999999999999
Q ss_pred cCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCchh--hHHHHHHHHHCCCCCHHHH
Q 006224 153 ADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF--LAIHTEGAVRGGLLREEDV 230 (656)
Q Consensus 153 ~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~~--~~~~l~~av~~g~v~~~~l 230 (656)
.|+++|++|||++|||+|+|||||++|+++...+. +..+.+..+++|||||.|.+. +...+..+...+ ++++++
T Consensus 226 ~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g---~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i 301 (397)
T COG1472 226 LSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG---SAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARL 301 (397)
T ss_pred CCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc---CHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHH
Confidence 99999999999999999999999999998766433 566777889999999998542 333444444555 999999
Q ss_pred HHHhhhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcceecccCCCCCCCcCCCCcEEEEEccCCcc
Q 006224 231 NLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDV 310 (656)
Q Consensus 231 d~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~~~~la~~~A~eSiVLLKN~~~~LPL~~~~~~kIaviGp~a~~ 310 (656)
+++++|||++|+++|+|+ +|+. .+|++++++++++|+|||||+..+|||+ ++.++|+|+||.++.
T Consensus 302 ~~~v~Ril~~k~~~~~f~-~~~~-------------~~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~ 366 (397)
T COG1472 302 DDAVRRILRVKFKLGLFE-NPYS-------------SEHRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADD 366 (397)
T ss_pred HHHHHHHHHHHHHhcccc-CCCc-------------hhhHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEcccccc
Confidence 999999999999999999 6652 1899999999999999999998899999 555799999999998
Q ss_pred ccccccccC
Q 006224 311 TVTMIGNYA 319 (656)
Q Consensus 311 ~~~~~G~~~ 319 (656)
. . |+|.
T Consensus 367 ~-~--g~~~ 372 (397)
T COG1472 367 G-D--GGWS 372 (397)
T ss_pred C-C--CCee
Confidence 8 5 6664
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.4e-53 Score=446.86 Aligned_cols=218 Identities=32% Similarity=0.512 Sum_probs=180.2
Q ss_pred CCCCCChHHHH--------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 006224 5 LPPFYCSICLD--------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRG 76 (656)
Q Consensus 5 ~~~~P~~~~la--------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~a~a~v~G 76 (656)
+|.||++++++ +++|+.+|+|+|++ |+ +++| ||++||.|+|+|||+.|||||||+++++|+.|||+|
T Consensus 69 ~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~---Gi-n~~~-aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G 143 (299)
T PF00933_consen 69 FTAFPSPMALAATWDPELAYEVGRIIARELRAL---GI-NVNF-APVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRG 143 (299)
T ss_dssp S---S-HHHHHHHTCHHHHHHHHHHHHHHHHHT---T--SEEE-EEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHH
T ss_pred CccCcchhhhhhhccchHHHHHHHHHHHHHHHh---hh-cccc-ccceeeeeeccccccccccchhHHHHHHHHHHHhcc
Confidence 68999999987 89999999999999 77 6765 999999999999999999999999999999999999
Q ss_pred HccCCCCCCceEEeeccccccC-CCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeeccccCCCcccccCH
Q 006224 77 LQGNTGSRLKVAACCKHYTAYD-LDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADP 155 (656)
Q Consensus 77 ~Q~~~~~~~gV~a~~KHF~g~g-~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~ 155 (656)
+|+. ||++|+||||||+ .|+| +....+++++++|+|.||+||+.+|+++++.+||+||+.+|++|+|+|+
T Consensus 144 ~q~~-----gv~~~~KHFpG~~~~d~~----~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~ 214 (299)
T PF00933_consen 144 LQGA-----GVAATAKHFPGHGAQDSH----RDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSP 214 (299)
T ss_dssp HHCT-----TSEEEEEEETTGGCSCTT----TTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-H
T ss_pred cccc-----cccccccccccccccccc----cccceecCCcccccchhcccchhcccccccceeeeeccccCCccchhhh
Confidence 9999 8999999999974 4444 4444567899999999999999999555699999999999999999999
Q ss_pred HHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCchh----hHHHHHHHHHCCCCCHHHHH
Q 006224 156 DILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPF----LAIHTEGAVRGGLLREEDVN 231 (656)
Q Consensus 156 ~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~~----~~~~l~~av~~g~v~~~~ld 231 (656)
++|+++||++|||+|+|||||++|+++...+ +..+++++||+||+||+|.+. ..+.|.++|++|.++++|||
T Consensus 215 ~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld 290 (299)
T PF00933_consen 215 KILTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLD 290 (299)
T ss_dssp HHHCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHH
T ss_pred ccchhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999997643 378999999999999998642 24899999999999999999
Q ss_pred HHhhhhHHH
Q 006224 232 LALAYTITV 240 (656)
Q Consensus 232 ~av~Ril~~ 240 (656)
+||+|||++
T Consensus 291 ~av~RIl~~ 299 (299)
T PF00933_consen 291 EAVRRILRL 299 (299)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=6.7e-45 Score=385.56 Aligned_cols=216 Identities=19% Similarity=0.219 Sum_probs=179.7
Q ss_pred cCCCCCChHHHH--------------HHHHHHHHHHHHhhhcCCCccceeeCccccccCCCCCCccccccCCCHHHHHHH
Q 006224 4 NLPPFYCSICLD--------------TRQLYVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKY 69 (656)
Q Consensus 4 ~~~~~P~~~~la--------------~~~g~~~a~E~ra~~~~Gi~~~~~laP~vdi~r~p~~gr~~e~fgeDP~l~~~~ 69 (656)
++|.||++++|+ +++|+++|+|+|++ || +++| +|++||.++++| |+.|+|||||+++++|
T Consensus 74 ~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~---Gi-n~~~-aPvlDv~~~~~~-ig~RsfgeDp~lv~~~ 147 (337)
T PRK05337 74 GFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC---GI-DLSF-APVLDLDGISAV-IGDRAFHRDPQVVAAL 147 (337)
T ss_pred CCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh---CC-Cccc-cCccCCCCCCCe-eeccCCCCCHHHHHHH
Confidence 678999988876 57899999999999 77 6665 999999965544 7789999999999999
Q ss_pred HHHHHHHHccCCCCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcCCcceEeec---cccC
Q 006224 70 AASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQV 146 (656)
Q Consensus 70 a~a~v~G~Q~~~~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g~~~~vM~s---y~~v 146 (656)
+.|||+|+|+. ||++|+|||||||.+..+.+-. ......+.++|++.||+||+.+|++| +.+|||| |+.+
T Consensus 148 a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~dsh~~-~~~~~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~i 220 (337)
T PRK05337 148 ASAFIDGMHAA-----GMAATGKHFPGHGAVEADSHVE-TPVDERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQV 220 (337)
T ss_pred HHHHHHHHHHC-----CCEEEecccCCCCCCcCCCCCC-CCCCCCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCC
Confidence 99999999998 8999999999999653211111 11123466799999999999999988 8999999 8999
Q ss_pred CCcccccCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCch---hhHHHHHHHHHCC
Q 006224 147 NGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGP---FLAIHTEGAVRGG 223 (656)
Q Consensus 147 ng~pa~~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~~---~~~~~l~~av~~g 223 (656)
|++|||+|+++|++|||+||||+|+|||||++|+++.. ..+.++++++|++||+||+|.+ .....+.+++.+
T Consensus 221 d~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~- 295 (337)
T PRK05337 221 DPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP- 295 (337)
T ss_pred CCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh-
Confidence 99999999999999999999999999999999987532 3477899999999999998743 334566677755
Q ss_pred CCCHHHHHHHhhhhHHHHHHh
Q 006224 224 LLREEDVNLALAYTITVQMRL 244 (656)
Q Consensus 224 ~v~~~~ld~av~Ril~~k~~~ 244 (656)
+++.+|+++++.+.
T Consensus 296 -------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 296 -------PISAERLTRLYGRG 309 (337)
T ss_pred -------hccHHHHHHHhccc
Confidence 77788888888663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=3.6e-40 Score=333.92 Aligned_cols=215 Identities=41% Similarity=0.586 Sum_probs=154.8
Q ss_pred ceecccCCCCCCCcCCCCcEEEEEccCCcccccccccc-CCCCCccCCHHHHHHHHhchh---hcccCCccccCCcccHH
Q 006224 281 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNY-AGVACGYTTPLQGISRYAKTI---HQAGCFGVACNGNQLIG 356 (656)
Q Consensus 281 iVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~-~g~~~~~~t~le~l~~~~~~~---y~~g~~~~~~~~~~~~~ 356 (656)
||||||++++|||++.+. ||+|+|+.+..+..++|++ ...+....+++++|+++.... +..++ ....+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGG--DAVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCC--CCCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeec--cccccccchH
Confidence 799999999999987643 9999999999876655544 334566789999999985421 11111 1112466788
Q ss_pred HHHHHhhcCCEEEEEEeCCCcccccc--------CCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceeccccccCC
Q 006224 357 AAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDP 428 (656)
Q Consensus 357 ~a~~~a~~aD~vIv~~G~~~~~~~Eg--------~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~~~~~~~ 428 (656)
++++.++++|++||++|. .++|+ .||.++.||..|.+||+++++.+ +|+|||+++|+||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 999999999999999982 23333 69999999999999999998764 6899999999999997764 4
Q ss_pred CccEEEEecCCCchhHHHHHHHHhCCCCCCcccCcccCCccccCCCCCccccccccCCCCCCcccccCCCcccccCcCCC
Q 006224 429 RIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 508 (656)
Q Consensus 429 ~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLS 508 (656)
+++|||++|++|+++++|+||||||++|||||||+|| |++. +++|.++... ..+++|+|....++||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCE
Confidence 8999999999999999999999999999999999997 8876 6778543211 1234577777899999999999
Q ss_pred CCC
Q 006224 509 YTT 511 (656)
Q Consensus 509 YTt 511 (656)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.82 E-value=7.8e-21 Score=156.65 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCCC-CCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeCC-CCEEecCeEEEEEEecCC
Q 006224 573 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 642 (656)
Q Consensus 573 evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 642 (656)
||||||+++|.+. .+|.|+|+||+||+|+|||+++|+|+|++ ++|++||++ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999985 89999999999999999999999999999 999999999 689999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.21 E-value=0.012 Score=51.02 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=44.7
Q ss_pred cEEEEEEEEeCCCC-CcceEEEEEEeCCCCCCCchhhhhccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeE
Q 006224 556 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 633 (656)
Q Consensus 556 ~~~v~v~VtNtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 633 (656)
.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+||++++|+|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999998 46678888886542 145556 6999999999999987 3 4688
Q ss_pred EEEEEe
Q 006224 634 HSLHIG 639 (656)
Q Consensus 634 y~i~vG 639 (656)
|+|.+=
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887664
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.43 E-value=0.1 Score=44.11 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=34.1
Q ss_pred EEEEEEEEeCCCCC------cceEEEEEEeCCCCC-------CCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeC
Q 006224 557 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 623 (656)
Q Consensus 557 ~~v~v~VtNtG~~~------G~evvQlY~~~~~~~-------~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 623 (656)
+.+.++|+|+++.+ .---.-+.|.++.+. ++.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56777788887753 111123444444431 2222 33456778999999999999998 5554
Q ss_pred CCCEEecCeEEEEE
Q 006224 624 FGIRRIPMGEHSLH 637 (656)
Q Consensus 624 ~~~~~~~~G~y~i~ 637 (656)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.28 E-value=0.16 Score=42.21 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=37.0
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCC-C--CCchhhhhccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPM 631 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~-~--~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 631 (656)
+++++++|+|.|..+-. -+.+=+..|.+ . ..|. ++ .|+|||+++++|.|..-.+ .++
T Consensus 6 ~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~~-----------a~~ 66 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPAD-----------AAP 66 (78)
T ss_dssp EEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-TT-------------S
T ss_pred EEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCCC-----------CCC
Confidence 68999999999976532 24444455654 1 2222 22 7999999999999997211 258
Q ss_pred eEEEEEEe
Q 006224 632 GEHSLHIG 639 (656)
Q Consensus 632 G~y~i~vG 639 (656)
|+|.|.+-
T Consensus 67 G~y~v~~~ 74 (78)
T PF10633_consen 67 GTYTVTVT 74 (78)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 99988753
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.58 E-value=1.7 Score=37.75 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecCCCCceEEe
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 622 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d 622 (656)
..+.+++|+|+|....+- -++.+....... -.-+..-.|+||++.++++++.+......++
T Consensus 21 ~~~~~v~l~N~s~~p~~f----~v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARF----RVRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEEEEEEEEECCCCCEEE----EEEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 578999999999998543 334443211111 0123345699999999999999325555444
No 12
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=89.81 E-value=0.62 Score=40.51 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC-----CCchhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~-----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
-+++++|+|||+++ +|+=-...--. .-....=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 37899999999999 88832222110 1111111122 3466789999999875
No 13
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=88.81 E-value=0.78 Score=39.86 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
=+++++|+|||+++ +|+=-...--...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999999 88832221110001 1111122 3466799999999875
No 14
>PRK13203 ureB urease subunit beta; Reviewed
Probab=87.85 E-value=0.92 Score=39.49 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=30.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
-+++++|+|||+|+ +|+=-...--...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999999 88833222111011 1111111 3466789999999875
No 15
>PRK13202 ureB urease subunit beta; Reviewed
Probab=86.71 E-value=1.3 Score=38.72 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=31.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEEe
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 612 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~l 612 (656)
-+++++|+|||+++ +|+=-...--...| ...=.|+ .-|..+|||+++|++.-
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 36899999999999 88732222111111 1111111 34667899999998753
No 16
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=86.00 E-value=1.2 Score=38.67 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=27.0
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
.-+++++|+|||+++ +|+=-...--...| ...=.|+ .-|..+|||+++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 357999999999999 88832221111111 1111122 3466789999999874
No 17
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.97 E-value=2.9 Score=46.08 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=48.1
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEe-CCCC-C-CCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCe
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG-N-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 632 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~-~~~~-~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 632 (656)
+..++|++.|-|+-+-+ .-|=++ .|.. . .--.-++ .-.||.|.|||+++|++++.+ .. -.+||
T Consensus 285 t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~~-~vt~vkL~~gE~kdvtleV~p-s~----------na~pG 350 (513)
T COG1470 285 TASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGEL-RVTSVKLKPGEEKDVTLEVYP-SL----------NATPG 350 (513)
T ss_pred ceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCce-EEEEEEecCCCceEEEEEEec-CC----------CCCCC
Confidence 67899999999987622 222223 3432 1 0001111 136888999999999999998 21 23789
Q ss_pred EEEEEEecCCc
Q 006224 633 EHSLHIGDLKH 643 (656)
Q Consensus 633 ~y~i~vG~ss~ 643 (656)
+|.+.|-.++.
T Consensus 351 ~Ynv~I~A~s~ 361 (513)
T COG1470 351 TYNVTITASSS 361 (513)
T ss_pred ceeEEEEEecc
Confidence 99998876553
No 18
>PRK13198 ureB urease subunit beta; Reviewed
Probab=83.65 E-value=2 Score=40.01 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=31.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEEe
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 612 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~l 612 (656)
-+++++|+|||+|+ ||+=-...--...| ...=.|+ .-|..+||++++|++.=
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 111 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP 111 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE
Confidence 46899999999999 88832222110011 1111122 34667999999998763
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=83.55 E-value=1.9 Score=39.36 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=31.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEEe
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 612 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~l 612 (656)
-+++++|+|||+|+ ||+=-...--...| ...=.|| .-|..+|||+++|++.=
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 83 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE 83 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 47899999999999 88832222111111 1111122 34667999999999863
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=83.41 E-value=2.2 Score=39.82 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEEe
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 612 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~l 612 (656)
-+++++|+|||+|+ |||=-...--...| ...=.|+ .-|..+|||+++|++.=
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 36899999999999 88832222111111 1111122 34667999999998763
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=83.15 E-value=19 Score=40.09 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHcCCcceEeeccccCCCc-----ccccCHHHHHHhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcC-
Q 006224 130 CVVEGKVASVMCSYNQVNGK-----PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG- 203 (656)
Q Consensus 130 ai~~g~~~~vM~sy~~vng~-----pa~~s~~ll~~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG- 203 (656)
.|+++ ...+|.+.+++.|. .|+.++.+++.+|+-=+.. |.-+..-+ |=..+|+..|
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepG----------------EFs~RAFLNgK 121 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPG----------------EFSKRAFLNGK 121 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCC----------------cchHHHHhcCC
Confidence 34556 66799999999874 6889998888888754433 23333222 3235555554
Q ss_pred CCcCCch--------hhHHHHHHHHH--CCCCCHHHHHHHhhhhHHHHHHh
Q 006224 204 LDLDCGP--------FLAIHTEGAVR--GGLLREEDVNLALAYTITVQMRL 244 (656)
Q Consensus 204 ~D~~~~~--------~~~~~l~~av~--~g~v~~~~ld~av~Ril~~k~~~ 244 (656)
+|+.-.. ..-.....|++ +|.++ +++++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 6653211 01112333444 46664 57777777888776655
No 22
>PRK13205 ureB urease subunit beta; Reviewed
Probab=81.21 E-value=2.7 Score=39.17 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=31.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
-+++++|+|||+++ ||+=-+..--...| ...=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999999 88833222111111 1111122 3466799999999987
No 23
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=79.98 E-value=2.9 Score=36.19 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=31.3
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCC--CC--C---CCchh-----hhhcccccccCCCCeEEEEEEe
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPP--AG--N---WSPNK-----QLIGFKKVHVTAGALQSVRLDI 612 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~--~~--~---~~P~k-----~L~gF~kv~L~pGes~~V~~~l 612 (656)
.-+++++|.|||++. +|+=-... .. . +|..- ..-.=+-|..+||+.|+|++.=
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV~ 83 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELVP 83 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEEE
Confidence 356788899999998 88722211 11 1 11100 0111245677999999998753
No 24
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=79.61 E-value=5.5 Score=34.88 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=22.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEec
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIH 613 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~ 613 (656)
.|+++++|.|... .++ .+.. ......|.||++++++|+-.
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~------------~~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD------------LGISKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG------------GTEEEEE-TT-EEEEEEEE-
T ss_pred eEEEEEEECCCCc-EEE---EECC------------CceEEEECCCCEEEEEEcCC
Confidence 5778889999885 222 2211 12336799999999998543
No 25
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=78.30 E-value=8.8 Score=32.69 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecCCCCceEEe
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 622 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d 622 (656)
.+.++++|.|+.+ -.++||-.. +....| .++.|+||++.++.+.+.. .-.+||
T Consensus 21 ~l~l~l~N~g~~~--~~~~v~~~~-y~~~~~-------~~~~v~ag~~~~~~w~l~~--s~gwYD 73 (89)
T PF05506_consen 21 NLRLTLSNPGSAA--VTFTVYDNA-YGGGGP-------WTYTVAAGQTVSLTWPLAA--SGGWYD 73 (89)
T ss_pred EEEEEEEeCCCCc--EEEEEEeCC-cCCCCC-------EEEEECCCCEEEEEEeecC--CCCcEE
Confidence 7899999997765 244444321 221223 5678999999999999953 334444
No 26
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=78.04 E-value=4.9 Score=29.70 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEEeCCCCCcceEEEEEEeCCCCC-CCchhhhhcccccccCCCCeEEEEEE
Q 006224 560 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 611 (656)
Q Consensus 560 ~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~ 611 (656)
+++++|+|+.. .+++=-.+... ..+ .+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgCt~~-----~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGCTTA-----EYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCCEEe-----eCCcceECCCCEEEEEEE
Confidence 37889999866 33322222222 222 245656999999998876
No 27
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=76.36 E-value=3.3 Score=41.41 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=31.4
Q ss_pred EEEeCCCCCcceEEEEEEeCCCCC---CCc--------hhhhhcccccccCCCCeEEEEEEecCCCCceEEeCCC
Q 006224 562 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFG 625 (656)
Q Consensus 562 ~VtNtG~~~G~evvQlY~~~~~~~---~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~ 625 (656)
+|-|-|. |.-+++||-+.+... ..| .+.+....++.|.||||- +|.+.-.-++|-+.|
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw~e~g 179 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFWGEGG 179 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEEE-TT
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEEecCC
Confidence 4566665 778889998887542 223 446888999999999995 677622334554433
No 28
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.92 E-value=11 Score=41.71 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=47.3
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEE
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 634 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y 634 (656)
..++.+.|.|+|+.+=+. +-|=+..|..= .-+.-.+ ++ .|+|||+++|.++++.-. + ..+|+|
T Consensus 398 e~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~--------~---a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPE--------D---AGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCC--------C---CCCCcE
Confidence 578899999999776444 45556666541 1123334 56 489999999999998611 1 157999
Q ss_pred EEEEecC
Q 006224 635 SLHIGDL 641 (656)
Q Consensus 635 ~i~vG~s 641 (656)
+|.+-..
T Consensus 462 ~i~i~~k 468 (513)
T COG1470 462 RITITAK 468 (513)
T ss_pred EEEEEEe
Confidence 9988753
No 29
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=75.02 E-value=4.3 Score=39.83 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
-+++++|+|||+|+ +|+=-...--...| .+.=.|| .-|..+|||+++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999999 88732222111111 1111122 3466789999998875
No 30
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=73.58 E-value=7.8 Score=34.90 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCC--CCCchhhhhccccc-ccCCCCeEEEEEEecC
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAG--NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 614 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~--~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 614 (656)
..+++|+|+|+ -.-.+|+.+..... ...+...|.=+=.+ .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 67999999999 45778998887211 12333345555555 489999999999 544
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=69.68 E-value=8.9 Score=41.16 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=30.6
Q ss_pred cEEEEEEEEeCCCCCcceEEEE---------EEeCCCCC--CCchhhhhcccc------cccCCCCeEEEEEEec
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAGN--WSPNKQLIGFKK------VHVTAGALQSVRLDIH 613 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQl---------Y~~~~~~~--~~P~k~L~gF~k------v~L~pGes~~V~~~l~ 613 (656)
+++++++|||.|+-+ |+| |+.+.... ..-..+|.+-+- --++|||++++++++.
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999865 555 22222111 111335555421 2389999999999984
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=68.67 E-value=8.1 Score=38.42 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=31.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEEe
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 612 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~l 612 (656)
=+++++|+|||+++ +|+=-...--...| ...=.|| .-|..+||++++|++.=
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 188 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELID 188 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 36899999999999 88732222111111 1111122 34667999999998753
No 33
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=64.40 E-value=25 Score=31.99 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=37.5
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCC---------C---------CCchhhhhcccc-cccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG---------N---------WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~---------~---------~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 614 (656)
..+++++|+|+++-.- .+++++..-.. . ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 5688888999887553 34444443211 0 124555555544 57999999999999986
No 34
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=57.80 E-value=26 Score=32.96 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccc-cCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 614 (656)
-+.|.++.+|+++. ++--+-+..+.- ..-.++++|.+|. |+||++.++.+-|+-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~l--~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKKL--PAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCCC--CCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 37899999999985 455555665531 2334789999996 999999999998885
No 35
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=57.31 E-value=11 Score=40.46 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChh--HHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR--QQELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~--Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||+..|... .+|.+|.++--... -.++++++.+.+++..|+++. +||+|+-
T Consensus 74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 356789999999988643 45556654311111 134555666544435665555 5999873
No 36
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=56.40 E-value=29 Score=32.52 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=36.6
Q ss_pred cEEEEEEEEeCCCCCcceE-EEEEE-eCC-CCC---CCchhhhhccccc------ccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHT-LLVFA-KPP-AGN---WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~ev-vQlY~-~~~-~~~---~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 614 (656)
++-|..+|||+|+.+=+++ +++=+ .++ ... ..=..++.+|.+. .|+|||++..++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 6899999999999965443 22211 111 111 2223445556322 2999999999999874
No 37
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=55.49 E-value=33 Score=31.38 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=39.1
Q ss_pred cEEEEEEEEeCCCC----CcceEEEEEEeCCCCC-CCchhhhhcccccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDM----AGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~----~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.-.+.|++||+|+. .|.=-|++.-..-... ....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 45889999999997 5666666662221111 12222333456788999999999998876
No 38
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=55.35 E-value=17 Score=31.87 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.1
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEe--CCCCCCCch-hhhhcccccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAK--PPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~--~~~~~~~P~-k~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.++|+++++|..+..-+. |++.+. .-.....+. .-.+-...+.|+|||++++++.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 599999999999988444 233332 111122222 1233345567999999999999987
No 39
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=48.45 E-value=15 Score=39.16 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhH----HHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q----~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
+..++||+||+..|... .+|.+|.++ =..- .++++++.+..++..++++ .+||+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~iviv-vtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLV-IGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCchHHH
Confidence 45789999999888642 345566543 1222 2344455544322244444 45999873
No 40
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=48.23 E-value=43 Score=36.04 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=33.0
Q ss_pred cEEEEEEEEeCCCCCcceEEEE---------EEeC-CCCC---CCchhhhhc--cc---ccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLV---------FAKP-PAGN---WSPNKQLIG--FK---KVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQl---------Y~~~-~~~~---~~P~k~L~g--F~---kv~L~pGes~~V~~~l~~ 614 (656)
+++++++|||.|+-+ |.| |+.. .... ..| ++|.+ -. ..-++|||+++|+++..-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP-~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYP-RELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCCh-HHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999999865 444 2222 0111 233 33332 21 223899999999998763
No 41
>COG1160 Predicted GTPases [General function prediction only]
Probab=47.79 E-value=50 Score=36.72 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEec
Q 006224 356 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 415 (656)
Q Consensus 356 ~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~ 415 (656)
+++..++.+||++|+++... + .+.+...++.+-|. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 35667789999999998421 2 23344455555555 467899999984
No 42
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.43 E-value=21 Score=38.24 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=33.6
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q----~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
.+..+.||+||+..|... .+|.+|.++ -..- .++.+++.+..++..++++. +||+|+
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 356789999999988542 345566543 2222 24445555542345555554 599986
No 43
>PLN00135 malate dehydrogenase
Probab=45.07 E-value=22 Score=37.92 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=34.1
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhH----HHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q----~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||+..|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+.
T Consensus 53 y~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 53 VEACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 355789999999988643 345566443 1222 34455665522345555554 5999873
No 44
>PRK05442 malate dehydrogenase; Provisional
Probab=44.76 E-value=23 Score=37.98 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=33.2
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||++.|... .+|.+|.++ -..-. ++++++.+..++..++++. +||+|+.
T Consensus 75 y~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 75 NVAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 356789999999887542 345566543 22222 3444555433234454444 5999873
No 45
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=44.36 E-value=64 Score=25.46 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=26.0
Q ss_pred hhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhc-CCCEEEEEe
Q 006224 362 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKAS-RGPVVLVLM 414 (656)
Q Consensus 362 a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~-~kpvVvVl~ 414 (656)
+--.++|++++-.+ +.=|. -..+|..|.+++.... ++|+|+|++
T Consensus 11 ~hL~~~ilfi~D~S---e~CGy------sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 11 AHLADAILFIIDPS---EQCGY------SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp GGT-SEEEEEE-TT----TTSS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HhhcceEEEEEcCC---CCCCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 33466777776321 11121 2368999999998776 789998875
No 46
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.98 E-value=96 Score=30.34 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=48.5
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEE-eCCCCCCCchhhhhcc--ccc-ccCCCCeEEEEEEecCCCCceEEeCCCC---EE
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGNWSPNKQLIGF--KKV-HVTAGALQSVRLDIHVCKHLSVVDKFGI---RR 628 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~-~~~~~~~~P~k~L~gF--~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~---~~ 628 (656)
.++|+++|.|.|+-+-.+| +|.= +.|... -.-..|= .+. .|+||++.+-++.|.+ +....++-... +.
T Consensus 39 ~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDV-KLTDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVTYR 113 (181)
T ss_pred EEEEEEEEEECCCCeEEEE-EEECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEEEE
Confidence 6999999999999876664 3433 223211 0011121 122 5899999999999998 66666654432 33
Q ss_pred ecCeEEEEEEecCC
Q 006224 629 IPMGEHSLHIGDLK 642 (656)
Q Consensus 629 ~~~G~y~i~vG~ss 642 (656)
.+.|.=...++.|+
T Consensus 114 ~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 114 DSEGAKELQVAYSS 127 (181)
T ss_pred CCCCCceeEEEEec
Confidence 44444444444443
No 47
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=43.89 E-value=1.3e+02 Score=24.91 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=43.7
Q ss_pred cEEEEEEEEe--CCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeE
Q 006224 556 SLGLHVDIKN--TGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 633 (656)
Q Consensus 556 ~~~v~v~VtN--tG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 633 (656)
.+++++.+-| +.=..|.. +++|++..... . .+.....-.|.||++..|+|.+.. +.+ +.+..|.+.+..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~-~~l~~~t~~~~---~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQ-ATVHIGSIRQT---A-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCCE-eEEEEcCCEEE---E-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 3556666666 22234433 55666654321 1 011111146899999999999643 456 4455677777777
Q ss_pred EEEEEe
Q 006224 634 HSLHIG 639 (656)
Q Consensus 634 y~i~vG 639 (656)
-++-+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 566666
No 48
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.44 E-value=25 Score=37.68 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||++.|... .+|.+|.++ -..-. ++..++.+..++..|+++. +||+|+-
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence 356789999999988643 345566543 22223 3444555433224554444 5999873
No 49
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=42.07 E-value=48 Score=24.68 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCHHHHHHHhhhhHHHHHHhc
Q 006224 215 HTEGAVRGGLLREEDVNLALAYTITVQMRLG 245 (656)
Q Consensus 215 ~l~~av~~g~v~~~~ld~av~Ril~~k~~~G 245 (656)
..+..++.-.-+.+.|+..|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3455677788899999999999999999988
No 50
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.84 E-value=27 Score=37.13 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHH----HHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~L----i~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||++.|... .+|.+|..++|-..-.++ ++++.+.. .+.|+++. .||+|+-
T Consensus 63 y~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivv-sNPvDv~ 125 (307)
T cd05290 63 YDDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILI-TNPLDIA 125 (307)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe-cCcHHHH
Confidence 356789999999988643 234342112333333334 44555443 34554444 5999873
No 51
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=40.42 E-value=10 Score=35.41 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=30.7
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHH----HHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~----Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..++||++|++.|... .+|.+|.++ =....+ +.+++.+.+++ .++++. .+|+++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~-~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPD-AIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTT-SEEEE--SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCc-cEEEEe-CCcHHH
Confidence 34678999999887542 455555443 123333 34455554443 344433 599986
No 52
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.43 E-value=29 Score=37.18 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhH--HHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ--QELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q--~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..+.+|+||++.|... .++.+|..+.-..-. .++.+.+.+..++..++++. .||+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999988643 234455332111111 23445555443335555554 489976
No 53
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=39.05 E-value=61 Score=28.66 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=30.4
Q ss_pred cEEEEEEEEeCCCCCcceEEEEE-----EeCCCCC---CCc---hhhhhcc--cccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVF-----AKPPAGN---WSP---NKQLIGF--KKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY-----~~~~~~~---~~P---~k~L~gF--~kv~L~pGes~~V~~~l~~ 614 (656)
..+.+++|+|.|+.+=.--+... ..+.... ..| ......| .++.|+||++++|+++++.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46889999999997643322222 1111111 111 1002333 4567899999999999997
No 54
>PLN02303 urease
Probab=38.82 E-value=42 Score=40.26 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=31.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----hhhhhcc-------cccccCCCCeEEEEEE
Q 006224 557 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 611 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 611 (656)
=+++++|+|||+|+ ||+=-...--...| ...=.|| .-|+.+|||+++|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 36899999999999 88833222111111 1111222 3467799999999986
No 55
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=38.35 E-value=22 Score=39.10 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=32.5
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHH----HHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li----~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||+..|... .+|.+|.++ -..-.+++ +++.+..++..|+++ .+||+|+.
T Consensus 115 y~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iviV-VsNPvDv~ 176 (387)
T TIGR01757 115 YEVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCKVLV-VGNPCNTN 176 (387)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCcHHHH
Confidence 356789999999887542 345566443 22223333 344442333444444 46999873
No 56
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=37.67 E-value=31 Score=36.97 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
+..+++|+||+..|... .++.+|.++ -..-. ++.+++.+..++..|+++. +||+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 45689999999887543 234455432 22222 3445555532344666555 5999873
No 57
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=36.12 E-value=12 Score=40.56 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEEEEEEeCCCCCcc-------------eEEEEEEeCCCC---CCCchhhhhcccc---cccCCCCeEEEEEEecCCCC
Q 006224 557 LGLHVDIKNTGDMAGT-------------HTLLVFAKPPAG---NWSPNKQLIGFKK---VHVTAGALQSVRLDIHVCKH 617 (656)
Q Consensus 557 ~~v~v~VtNtG~~~G~-------------evvQlY~~~~~~---~~~P~k~L~gF~k---v~L~pGes~~V~~~l~~~~~ 617 (656)
..|.++|||||+.+=+ +=|++|-....- ..++.-.+-+... +.|+||||.+++|.+-...|
T Consensus 40 t~VkA~VTNtG~e~l~llK~ntilD~~Pv~kv~V~~~g~~V~F~Gi~~~~~~~~L~~d~F~~L~pG~sve~~fDiA~~~d 119 (359)
T PF02102_consen 40 TRVKATVTNTGSEDLKLLKYNTILDSAPVKKVSVYKDGKEVPFTGIRLRYDTSGLTEDAFQTLAPGESVEVEFDIAETHD 119 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEeCCCcceEEEeeceecCCCceeEEEEEcCCcccccccEEEEEecCCCCHHHceecCCCCeEEEEEcchheee
Confidence 5799999999987521 223344211000 0233223222222 34899999999999986556
Q ss_pred ce
Q 006224 618 LS 619 (656)
Q Consensus 618 ls 619 (656)
|+
T Consensus 120 Ls 121 (359)
T PF02102_consen 120 LS 121 (359)
T ss_dssp --
T ss_pred cC
Confidence 64
No 58
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=35.38 E-value=1.1e+02 Score=28.49 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=14.0
Q ss_pred ccCCCCeEEEEEEecC
Q 006224 599 HVTAGALQSVRLDIHV 614 (656)
Q Consensus 599 ~L~pGes~~V~~~l~~ 614 (656)
.|+|||+++++|..+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999999875
No 59
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=34.96 E-value=27 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=17.1
Q ss_pred CchhhhhcccccccCCCCeEEEEEEecC
Q 006224 587 SPNKQLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 587 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.|.--|+ .+|.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 4444454 4778999999999998754
No 60
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=34.90 E-value=1.7e+02 Score=27.45 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=36.4
Q ss_pred cccccCCCCccEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCch-hhhhcccccccCCCCeEEEEEEecC
Q 006224 546 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 546 ~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~~~~~-~~P~-k~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
++...|++.....|-|+|+- ....|++|...-.+. ..|- -.-+.-=.+.|.|||+..|-+.++.
T Consensus 59 VsN~lwEn~~~~~IcV~I~s-----~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 59 VSNHLWENGADVPICVTISS-----SSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred eecccccccCCceEEEEEec-----CCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 33344554113667777772 256799998654332 2221 1111111235899999999999986
No 61
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=34.53 E-value=99 Score=29.07 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=21.1
Q ss_pred hhhcccccccCCCCeEEEEEEecC
Q 006224 591 QLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 591 ~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.|.+-+++.|.|||+++++++++.
T Consensus 81 ~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 81 DLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHhhcceEEECCCCeeEeeeecCC
Confidence 577778888999999999999986
No 62
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=34.38 E-value=39 Score=35.97 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCCh--hHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~--~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..+.||+||++.|... ++|-+|.+|--.. -..++.+++.+.+. ..++++. .||+|+.
T Consensus 64 y~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~~ 124 (313)
T COG0039 64 YEDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHHH
Confidence 345689999999998653 4555665441111 12345566666443 4555444 5999874
No 63
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=34.14 E-value=50 Score=35.19 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..+.||+||++.|... .+|.+|.++ =.... +..+++.+.+ ...++++. .||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~-p~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESC-PKAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhC-CCeEEEEe-cCchhh
Confidence 45789999999998643 345566543 22222 3344555443 34554444 599984
No 64
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.31 E-value=1.6e+02 Score=32.93 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=34.6
Q ss_pred ccHHHHHHHhhc--CCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 353 QLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 353 ~~~~~a~~~a~~--aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
..+.+|.+.+.. .|++|++=| |+...+|. +=+...+++++++ ++.|||.-+ |.=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RG--------GGS~eDL~-~Fn~e~v~~ai~~-~~~Pvis~I--GHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARG--------GGSLEDLW-AFNDEAVARAIAA-SRIPVISAV--GHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecC--------CCCHHHhh-ccCcHHHHHHHHc-CCCCEEEec--cCCCCcc
Confidence 345556655555 488888644 22233331 2256788999986 678877543 6666554
No 65
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.22 E-value=95 Score=26.70 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=28.9
Q ss_pred HHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEE
Q 006224 358 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 412 (656)
Q Consensus 358 a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvV 412 (656)
..+..+++|+||++++.- .-.-...+++.|+..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 345678999999998532 2344567888888888887755
No 66
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=33.08 E-value=56 Score=37.07 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=35.5
Q ss_pred HhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCc
Q 006224 160 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 209 (656)
Q Consensus 160 ~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~ 209 (656)
+=|++=+||+|.|+||.++.+.+.-. ....++++...---.-|.|+.|.
T Consensus 73 gGlh~f~~w~g~ilTDSGgfQv~s~g-~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 73 KGLHKLLGFDGPIMTDSGSYQLLVYG-DVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred CCHHHHhCCCCCeEeccCCcEEEEcC-CccCCHHHHHHHHHHhCCCEEeE
Confidence 33677799999999999987765432 23457777666556689999873
No 67
>PRK05086 malate dehydrogenase; Provisional
Probab=32.33 E-value=39 Score=35.95 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCCh---hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~---~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..+.+|+||+++|... .++.+|.++ |.. --.++++++.+.+. +.++++ ..||.|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~-~~iviv-vsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCP-KACIGI-ITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchHH
Confidence 44578999999998643 233345433 111 22456666666543 344443 4599964
No 68
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.25 E-value=3.5e+02 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.7
Q ss_pred hcCCCCcEEEcChhhhh
Q 006224 164 GQWRLDGYIVSDCDSVG 180 (656)
Q Consensus 164 ~e~gf~G~v~SD~~~~~ 180 (656)
++-||+.+.++|...|.
T Consensus 29 e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 29 DEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHcCCCEEEECHHHHHH
Confidence 45577777777766553
No 69
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=32.09 E-value=87 Score=31.10 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=33.3
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccc----------cccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k----------v~L~pGes~~V~~~l~~ 614 (656)
..++++.|+=++. ++.=+|+|+--.|.+..+++-. |.-+ ..|.|||..+|+|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 4667777775555 4477788877777764333222 2333 35899999999999987
No 70
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=31.86 E-value=1e+02 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 006224 356 GAAEVAARQADATVLVMG 373 (656)
Q Consensus 356 ~~a~~~a~~aD~vIv~~G 373 (656)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998884
No 71
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=31.65 E-value=1.1e+02 Score=34.76 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhh-cccccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~-gF~kv~L~pGes~~V~~~l~~ 614 (656)
.-+++++|+|+|...-+.+.-.|.. |..-..|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999977777766654 111111222211 122235899999999999987
No 72
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.47 E-value=1.9e+02 Score=32.29 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=33.2
Q ss_pred cHHHHHHHhhc---CCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 354 LIGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 354 ~~~~a~~~a~~---aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..|++.+.. .|++|++=|. +...+|. +=+...+++++++ ++.|||.-+ |.=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis~i--GHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIISAV--GHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEEec--CcCCCcc
Confidence 34455554443 6888886542 2233331 2256778899985 678877543 6666654
No 73
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.18 E-value=39 Score=35.72 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=33.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCCh--hHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~--~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
+..+.||++|++.|... .++.+|.++-.-. --.++.+++.+.+ ++.++++ .++|.++-
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv-~sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAIILV-VSNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-ccChHHHH
Confidence 46789999999998643 3455665432211 1234445555443 3455444 46999873
No 74
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=31.11 E-value=51 Score=34.94 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=30.6
Q ss_pred hhcCCEEEEEEeCCCccccccCCCCCccCChhHHHH----HHHHHHhcCCCEEEEEecCcceecc
Q 006224 362 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 362 a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~L----i~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
++.||++|+++|... .++.+|.+ |-....++ ++++.+.++ +.++++. .||.++-
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHH
Confidence 578999999998653 23334433 22233333 444555433 4444444 5999873
No 75
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=31.11 E-value=33 Score=38.42 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.+..++||+||+..|... ++|.+|.++ =..-. ++.+++.+..++..++++ .+||+|+.
T Consensus 171 ye~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~ivIV-VsNPvDv~ 232 (444)
T PLN00112 171 YEVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASRNVKVIV-VGNPCNTN 232 (444)
T ss_pred HHHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEE-cCCcHHHH
Confidence 355789999999887542 455566543 12222 334445441233455444 46999873
No 76
>PLN02602 lactate dehydrogenase
Probab=31.06 E-value=41 Score=36.45 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceecc
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
+..++||+||++.|... .+|.+|.++- ..-. ++++++.+.+. +.++++. .||+++-
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll--~~N~~I~~~i~~~I~~~~p-~~ivivv-tNPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLL--QRNVALFRKIIPELAKYSP-DTILLIV-SNPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHHCC-CeEEEEe-cCchHHH
Confidence 34689999999988643 3455665432 2222 34445554433 4555554 4999873
No 77
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.95 E-value=52 Score=35.04 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..+.||+||++.|... .+|.+|.++ =..-. +.++++.+.+ ...++++. .||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKAC-PKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEEEc-cCchhh
Confidence 55789999999988643 344455443 22222 3444555543 34555444 599976
No 78
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.39 E-value=58 Score=34.57 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=30.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCCh--hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~--~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..+.||++|+++|... .++.+|.++-.-. --.+.++++.+.++ ..++++. ++|+++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 34789999999998653 3444554321000 01233444544443 3444444 589876
No 79
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=28.87 E-value=1.6e+02 Score=33.47 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=36.8
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.+++.++|+-+|++. |.+||-+. ..+.+++.+..|.-+. +.|++.|..
T Consensus 328 ~~~i~ftv~a~g~~~----vta~V~d~------~g~~~~~~~~~v~d~s-~~vtL~Ls~ 375 (478)
T PRK13211 328 AATLDFTVTATGDMN----VEATVYNH------DGEALGSKSQTVNDGS-QSVSLDLSK 375 (478)
T ss_pred cEEEEEEEEeccceE----EEEEEEcC------CCCeeeeeeEEecCCc-eeEEEeccc
Confidence 689999999888764 77777665 3467788888887655 888888875
No 80
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=27.29 E-value=1.8e+02 Score=29.48 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhccc-ccccCCCCeEEEEEEec
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFK-KVHVTAGALQSVRLDIH 613 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 613 (656)
.++++|+|+|+. .-.+|.-+.+.... +...+.-.= -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~--~~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPED--KSKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCC--CCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 578888999986 47888888654321 110111111 23589999999997643
No 81
>PRK13556 azoreductase; Provisional
Probab=26.30 E-value=1.5e+02 Score=29.18 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHH
Q 006224 356 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 403 (656)
Q Consensus 356 ~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~ 403 (656)
++..+..++||.+|++.= .+ ++..|..=+.+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P---~y--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFP---LW--------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEecc---cc--------ccCCcHHHHHHHHHHhc
Confidence 455567889999999762 11 45678777788888764
No 82
>PRK13555 azoreductase; Provisional
Probab=26.25 E-value=1.4e+02 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHH
Q 006224 355 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 403 (656)
Q Consensus 355 ~~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~ 403 (656)
.++..+..+.||.+|++. +.+ ++.+|+.=+..|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~---P~~--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAF---PLW--------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEc---Ccc--------cccchHHHHHHHHHHhc
Confidence 345567788999999876 222 35677777777777764
No 83
>COG2430 Uncharacterized conserved protein [Function unknown]
Probab=26.09 E-value=1.6e+02 Score=29.74 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCC------CcceEEEEEEeCCCC-------CCCchhh-----hhcccccc-cCCCCeEEEEEEecCCCCc
Q 006224 558 GLHVDIKNTGDM------AGTHTLLVFAKPPAG-------NWSPNKQ-----LIGFKKVH-VTAGALQSVRLDIHVCKHL 618 (656)
Q Consensus 558 ~v~v~VtNtG~~------~G~evvQlY~~~~~~-------~~~P~k~-----L~gF~kv~-L~pGes~~V~~~l~~~~~l 618 (656)
.+++.+.|+|++ .|.+|--+.+.+-.. +-.+.+| |.-|++-. ++||+++++-++++. +.
T Consensus 16 ~~~I~~~~~G~~~~yrr~~G~~VEk~~~g~~~rii~~Pv~p~~~P~evt~~llirl~~pivv~Pgs~~~iyl~vPV--di 93 (236)
T COG2430 16 GISISTARDGDYYYYRRVDGGEVEKVILGDGVRIIPAPVEPVNLPLEVTNFLLIRLESPIVVAPGSSRTIYLKVPV--DI 93 (236)
T ss_pred ceEEEEeccCceEEEEEeCCCeeEEEeccCcccEEEccccccCChhheeeeEEEEecCcEEeCCCCcEEEEEEeeE--EE
Confidence 467788899985 788887777776222 1111222 55677776 699999999999997 67
Q ss_pred eEEeCC
Q 006224 619 SVVDKF 624 (656)
Q Consensus 619 s~~d~~ 624 (656)
+++-.+
T Consensus 94 aV~~~~ 99 (236)
T COG2430 94 AVYASA 99 (236)
T ss_pred EEEEcC
Confidence 776543
No 84
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.87 E-value=2.6e+02 Score=25.88 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=39.2
Q ss_pred cEEEEEEEEeCCCCCc-ceEEEEEEeCCCCC------CCchhhhhcc--cccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAG-THTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G-~evvQlY~~~~~~~------~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 614 (656)
.+.++.+++|+++.+= -=.+++-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 6899999999999852 12344455554442 2454444433 2446999999999999874
No 85
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=25.66 E-value=2.4e+02 Score=23.80 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=40.2
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeC
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 623 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 623 (656)
.+++.+++.|.+.....-.+++.+.......... .-..+.+..+....+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777777799999999999999988876531111 112334566666666455554 45677776
No 86
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=25.66 E-value=67 Score=33.97 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q----~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..++||++|++.|... .+|.+|.++ -..- .++.+++.+. +...++++ .+||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~-~p~~~viv-vsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKS-GFDGIFLV-ATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEE-eCCHHHH
Confidence 45789999999988643 345566443 1222 2344555554 33455444 4699976
No 87
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.10 E-value=88 Score=23.90 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=16.5
Q ss_pred cEEEEEEEEeCCCCCcceEEEE
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLV 577 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQl 577 (656)
.++.+++|+|+|...... |+|
T Consensus 13 ~v~Yti~v~N~g~~~a~~-v~v 33 (53)
T TIGR01451 13 TITYTITVTNNGNVPATN-VVV 33 (53)
T ss_pred EEEEEEEEEECCCCceEe-EEE
Confidence 799999999999977543 444
No 88
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.79 E-value=82 Score=27.85 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=27.8
Q ss_pred cEEEEEEEEeCCCCCcce-EEEEEEeCCCCC-CCchh----hhhcccccccCCCCeEEEEEEecC
Q 006224 556 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNK----QLIGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~e-vvQlY~~~~~~~-~~P~k----~L~gF~kv~L~pGes~~V~~~l~~ 614 (656)
-+.|+|+|+|+|+-+-.- ..+..+.+.... -.|.. ....+.-..|+||++.+..+....
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 589999999999865321 013344444432 11111 111144567999999876655543
No 89
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=24.60 E-value=2.1e+02 Score=28.50 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 357 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 357 ~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+.++....||.+|+...- -|+..|..-...|+.++.+ +| +-=.. .-+|.-+
T Consensus 80 ~l~~ef~aAD~vVi~~PM-----------~Nf~iPa~LK~yiD~i~~a-Gk-TFkYt-e~Gp~GL 130 (202)
T COG1182 80 KLLEEFLAADKVVIAAPM-----------YNFNIPAQLKAYIDHIAVA-GK-TFKYT-ENGPVGL 130 (202)
T ss_pred HHHHHHHhcCeEEEEecc-----------cccCCCHHHHHHHHHHhcC-Cc-eEEec-cCCcccc
Confidence 445566789999987632 2688999889999999864 43 33332 2356655
No 90
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=24.23 E-value=49 Score=33.41 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHHccCC------CCCCceEEeeccccccCCCCCCCCCccccccccCHHHHHhhccHHHHHHHHcC
Q 006224 61 EDPVLTGKYAASYVRGLQGNT------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEG 134 (656)
Q Consensus 61 eDP~l~~~~a~a~v~G~Q~~~------~~~~gV~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~L~e~~l~pF~~ai~~g 134 (656)
.+|.-+.++-.+...+.+... ...+.+++.--=|-|. .++ +.+-+| | -|+.|++..
T Consensus 104 ~sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~GT-------i~~----s~V~PR---E----I~k~Al~~n 165 (224)
T COG2003 104 TSPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIGT-------LNV----SEVHPR---E----IFKEALKYN 165 (224)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEeee-------ccc----ceecHH---H----HHHHHHHhc
Confidence 468888888887777777651 1222344333333321 011 122333 3 268889876
Q ss_pred CcceEeeccccCCCccc-ccCHHHHHHhhhhcCCCCcEEEcChhhh
Q 006224 135 KVASVMCSYNQVNGKPT-CADPDILKNTIHGQWRLDGYIVSDCDSV 179 (656)
Q Consensus 135 ~~~~vM~sy~~vng~pa-~~s~~ll~~lLR~e~gf~G~v~SD~~~~ 179 (656)
+.+||++||.=.|.|. +.....+|.-|.+-..+-|+.+=|-.-+
T Consensus 166 -AaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 166 -AAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred -chhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 7899999999988653 3444567888999999999888776443
No 91
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=23.82 E-value=1.4e+02 Score=25.99 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEe
Q 006224 356 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 414 (656)
Q Consensus 356 ~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~ 414 (656)
....+....+|++|+++-.+. .+.....++++.+. .++|+|+|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 345566688999999985221 11234567778874 5688988875
No 92
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=23.78 E-value=85 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.8
Q ss_pred cEEEEEEEEeCCCCCcce
Q 006224 556 SLGLHVDIKNTGDMAGTH 573 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~e 573 (656)
.++.+++|+|+|...-..
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999998554
No 93
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=23.72 E-value=84 Score=33.23 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=31.3
Q ss_pred HhhcCCEEEEEEeCCCccccccCCCCCccCChhHHH----HHHHHHHhcCCCEEEEEecCcceecc
Q 006224 361 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDVS 422 (656)
Q Consensus 361 ~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~----Li~~v~~~~~kpvVvVl~~g~P~~l~ 422 (656)
.++.||++|++.|... .+|.+|.++ -..-.. ..+++.+.++ ..++++ .+||+++-
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~-~~~viv-vsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGF-DGIFLV-ASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEE-ecChHHHH
Confidence 4579999999998643 345566433 222223 3344444333 455444 45999873
No 94
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=23.52 E-value=1.6e+02 Score=30.45 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchh----hhhccccc-ccCCCCeEEEEEEec
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 613 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k----~L~gF~kv-~L~pGes~~V~~~l~ 613 (656)
.++++|+|+|+. .-.||..+.+......|.+ .+.-.==+ .|+||+.+.|+|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 5889998864332222321 13333333 489999999997654
No 95
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=23.15 E-value=1.7e+02 Score=25.91 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=30.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhh-hcccccccCCCCeEEEEEEecC
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 614 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L-~gF~kv~L~pGes~~V~~~l~~ 614 (656)
.-+++|+|...-+ ..+++=+..+. --+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~--~~~~i~~~g~~-----~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQP--RTYTISVEGLP-----GAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES-S-----S-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCC--EEEEEEEecCC-----CeEEECCCcceEECCCCEEEEEEEEEE
Confidence 4678889988766 33555555432 2344 4678889999999999998875
No 96
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=23.09 E-value=3e+02 Score=26.29 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCccccccCCCCCccCChhHHHHHHHHHHhcCCCEEEEEec
Q 006224 355 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 415 (656)
Q Consensus 355 ~~~a~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~~Li~~v~~~~~kpvVvVl~~ 415 (656)
..+....+..+|++|+++... +| +.....+.++.+. ..+.|+|+|++-
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~-~~~~p~ivvlNK 131 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILR-ELGIPIIVVLNK 131 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHH-HTT-SEEEEEET
T ss_pred eecccceecccccceeeeecc-----cc-------ccccccccccccc-ccccceEEeeee
Confidence 345566788999999999532 11 2233445666654 457888888764
No 97
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.03 E-value=1.5e+02 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCCHHHHHHHhhhhH
Q 006224 214 IHTEGAVRGGLLREEDVNLALAYTI 238 (656)
Q Consensus 214 ~~l~~av~~g~v~~~~ld~av~Ril 238 (656)
..|.+...+|.|+++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678899999999999999988886
No 98
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=22.89 E-value=1e+02 Score=33.83 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCEEEEEec-Ccceecc---cccc----CCCccEEEEecCCCchhHHHHHHHHhCCC
Q 006224 395 QELVSRVAKASRGPVVLVLMC-GGPVDVS---FAKN----DPRIGAILWVGYPGQAGGAAIADVLFGRA 455 (656)
Q Consensus 395 ~~Li~~v~~~~~kpvVvVl~~-g~P~~l~---~~~~----~~~v~AiL~a~~~G~~~g~AlAdVL~G~~ 455 (656)
.++|+++.+.+++||++|.++ |+++..- +... ...|+.+|...-|=.-+..|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 356777666668899999887 6676543 3211 13688888776665556789999999983
No 99
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=22.66 E-value=1.7e+02 Score=30.01 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhh---hhccccc-ccCCCCeEEEEEEecC
Q 006224 558 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIHV 614 (656)
Q Consensus 558 ~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~---L~gF~kv-~L~pGes~~V~~~l~~ 614 (656)
.++++|+|+|+. .-.+|..+........|.+. +.-.=-+ .|+||+.+.|+|-...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 578889999987 58999988643322223211 1212222 4789999999877543
No 100
>PHA00691 hypothetical protein
Probab=22.23 E-value=89 Score=24.33 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=15.7
Q ss_pred CCCC-EEec-CeEEEEEEecCC
Q 006224 623 KFGI-RRIP-MGEHSLHIGDLK 642 (656)
Q Consensus 623 ~~~~-~~~~-~G~y~i~vG~ss 642 (656)
++|+ |+++ .|.|+++|.+-.
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG~T 32 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSGVT 32 (68)
T ss_pred cCCeEEEEEeCCcEEEEEeccc
Confidence 5665 8887 699999998643
No 101
>PTZ00325 malate dehydrogenase; Provisional
Probab=21.65 E-value=77 Score=33.93 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCccCCh---hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 359 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 359 ~~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~---~Q~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
.+..+.+|+||+++|... .++.+|.++ |.. .-.++++++.+... +-|+++ ..+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~-~~iviv-~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAP-KAIVGI-VSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCC-CeEEEE-ecCcHHH
Confidence 456789999999998643 233345443 222 22456666665543 344443 3589887
No 102
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.24 E-value=1.2e+02 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=8.5
Q ss_pred ecCeEEEEEEec
Q 006224 629 IPMGEHSLHIGD 640 (656)
Q Consensus 629 ~~~G~y~i~vG~ 640 (656)
++||+|+|.|=.
T Consensus 36 L~~G~Y~l~V~a 47 (66)
T PF07495_consen 36 LPPGKYTLEVRA 47 (66)
T ss_dssp --SEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 579999998863
No 103
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=21.12 E-value=81 Score=33.60 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCccCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006224 360 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 360 ~~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q~----~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
+..++||++|++.|... .+|.+|.++ -.... ++++++.+.+. ..+++ +.++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~~-~~~vi-vvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASGF-DGIFL-VASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEE-EccCcHHH
Confidence 45689999999988643 345566443 12222 33445554433 34444 34699986
No 104
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.69 E-value=1.1e+02 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHhhhhHHHHHHhcC
Q 006224 222 GGLLREEDVNLALAYTITVQMRLGM 246 (656)
Q Consensus 222 ~g~v~~~~ld~av~Ril~~k~~~Gl 246 (656)
.|.|+.+.+-+++.|++..+.+-|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999988764
No 105
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=20.60 E-value=4.1e+02 Score=23.05 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCchhhhhcccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEE
Q 006224 556 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 635 (656)
Q Consensus 556 ~~~v~v~VtNtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 635 (656)
.+..++.|+|.+.....-.||++.... .+ .-..+.||+|...++ +.-+..+..+ ..-....|+|.
T Consensus 25 ~i~gTi~V~n~~~~~~~itV~i~~~g~-----~v------~tftV~pG~S~S~T~--~~~~sI~I~~--~~~g~~~G~~C 89 (92)
T PF13157_consen 25 SISGTIYVYNDTGSGNPITVTILQNGT-----AV------NTFTVQPGNSRSFTV--RDFQSIQIVT--TPTGTIEGEFC 89 (92)
T ss_pred EEEEEEEEEECCCCCCCEEEEEEECCc-----EE------eEEEECCCceEEEEe--ccceEEEEEe--CCCcEEEEEEE
Confidence 578899999999988888899883322 11 223479999974443 2212334444 22234568887
Q ss_pred EE
Q 006224 636 LH 637 (656)
Q Consensus 636 i~ 637 (656)
+.
T Consensus 90 ~~ 91 (92)
T PF13157_consen 90 IT 91 (92)
T ss_pred EE
Confidence 65
No 106
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.55 E-value=89 Score=33.27 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=31.6
Q ss_pred HhhcCCEEEEEEeCCCccccccCCCCCccCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006224 361 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 421 (656)
Q Consensus 361 ~a~~aD~vIv~~G~~~~~~~Eg~Dr~~l~Lp~~Q----~~Li~~v~~~~~kpvVvVl~~g~P~~l 421 (656)
..++||+||++.|.... +|.+|.++ -..- .++++++.+.++ +.++++. .||.++
T Consensus 68 ~~~~adivvitaG~~~k---~g~~R~dl--l~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQN---EGESRLDL--VQRNVDIFKGIIPKLVKYSP-NAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCCC---CCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CcEEEEc-cChHHH
Confidence 46899999999886532 45566433 1222 234455555433 4454444 599976
No 107
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.12 E-value=1.2e+02 Score=35.87 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=35.6
Q ss_pred HhhhhcCCCCcEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCCc
Q 006224 160 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 209 (656)
Q Consensus 160 ~lLR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~e~~~~al~AG~D~~~~ 209 (656)
+=|++=+||+|.|+||.++.+-+.-.. ...++++...---.-|.|+.|.
T Consensus 72 gGlH~f~~w~g~ilTDSGgfQv~s~g~-~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 72 KGIHSLIGFDGPIMTDSGSFQLSVYGD-VEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred CChHHHhCCCCCeEecCCceeeeecCc-cccCHHHHHHHHHHhCCCEEEE
Confidence 346677899999999999887664332 3457777665555679999873
Done!