Query 006225
Match_columns 655
No_of_seqs 502 out of 2323
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yz0_A Serine/threonine-protei 99.8 6.1E-20 2.1E-24 170.5 12.3 114 152-296 8-128 (138)
2 2ebm_A RWD domain-containing p 99.8 7.8E-20 2.7E-24 167.5 11.1 114 152-297 8-122 (128)
3 1ukx_A GCN2, GCN2 EIF2alpha ki 99.8 6E-20 2E-24 170.3 10.3 116 152-296 8-129 (137)
4 2ebk_A RWD domain-containing p 99.8 9.2E-20 3.1E-24 167.1 10.4 112 155-297 8-122 (128)
5 2day_A Ring finger protein 25; 99.8 2.9E-19 1E-23 163.7 13.0 114 154-295 8-124 (128)
6 2dax_A Protein C21ORF6; RWD do 99.8 6.4E-19 2.2E-23 166.3 12.8 116 152-298 6-141 (152)
7 2daw_A RWD domain containing p 99.8 4.7E-18 1.6E-22 160.5 13.3 113 152-298 12-143 (154)
8 1wim_A KIAA0161 protein; ring 99.5 4.5E-15 1.6E-19 128.3 5.3 85 347-431 4-91 (94)
9 1wd2_A Ariadne-1 protein homol 99.5 2.9E-15 9.8E-20 117.8 3.2 55 596-653 1-58 (60)
10 1wd2_A Ariadne-1 protein homol 99.2 1.7E-12 5.7E-17 102.0 1.1 53 517-571 2-57 (60)
11 4ap4_A E3 ubiquitin ligase RNF 98.9 3.2E-10 1.1E-14 103.2 3.1 97 347-471 6-109 (133)
12 2ct7_A Ring finger protein 31; 98.8 9.4E-11 3.2E-15 99.3 -4.4 69 415-483 4-76 (86)
13 2jmo_A Parkin; IBR, E3 ligase, 98.6 1.4E-09 4.6E-14 90.8 -3.4 66 412-479 2-75 (80)
14 2ct2_A Tripartite motif protei 98.3 4.4E-07 1.5E-11 76.4 5.7 60 347-413 14-75 (88)
15 3hcs_A TNF receptor-associated 98.3 9.4E-07 3.2E-11 84.2 6.5 52 347-409 17-68 (170)
16 2ecv_A Tripartite motif-contai 98.2 9.9E-07 3.4E-11 73.5 5.4 58 347-410 18-75 (85)
17 2ysl_A Tripartite motif-contai 98.2 7.5E-07 2.6E-11 72.3 4.1 54 347-409 19-72 (73)
18 2ecw_A Tripartite motif-contai 98.2 1.7E-06 5.8E-11 72.0 5.9 58 347-410 18-75 (85)
19 2djb_A Polycomb group ring fin 98.2 1.8E-06 6.2E-11 70.0 5.5 55 347-413 14-69 (72)
20 1t1h_A Gspef-atpub14, armadill 98.2 2.2E-06 7.6E-11 70.5 5.9 65 347-422 7-72 (78)
21 3lrq_A E3 ubiquitin-protein li 98.2 1.7E-06 5.8E-11 75.0 5.3 66 347-423 21-88 (100)
22 1jm7_A BRCA1, breast cancer ty 98.1 2.6E-06 9E-11 75.0 6.2 72 346-426 19-91 (112)
23 1g25_A CDK-activating kinase a 98.1 1.4E-06 4.7E-11 69.2 3.8 57 348-413 3-62 (65)
24 2egp_A Tripartite motif-contai 98.1 3.8E-07 1.3E-11 75.2 0.3 59 347-410 11-69 (79)
25 2ecm_A Ring finger and CHY zin 98.1 2.3E-06 7.8E-11 65.3 4.7 48 348-405 5-54 (55)
26 3ztg_A E3 ubiquitin-protein li 98.1 2.3E-06 7.7E-11 72.8 5.2 48 347-404 12-60 (92)
27 2ct7_A Ring finger protein 31; 98.1 9.1E-07 3.1E-11 74.7 2.5 51 519-571 23-73 (86)
28 2ecy_A TNF receptor-associated 98.1 1.5E-06 5.2E-11 69.2 3.7 52 347-409 14-65 (66)
29 2xeu_A Ring finger protein 4; 98.1 1.9E-06 6.5E-11 67.8 4.2 55 348-412 3-62 (64)
30 3ng2_A RNF4, snurf, ring finge 98.1 1.9E-06 6.6E-11 69.3 4.2 56 347-412 9-69 (71)
31 1e4u_A Transcriptional repress 98.1 1.6E-06 5.3E-11 71.8 3.2 54 347-409 10-65 (78)
32 2ysj_A Tripartite motif-contai 98.0 3.6E-06 1.2E-10 66.2 4.7 44 347-397 19-62 (63)
33 2y43_A E3 ubiquitin-protein li 98.0 5E-06 1.7E-10 71.7 5.0 66 347-424 21-88 (99)
34 3fl2_A E3 ubiquitin-protein li 98.0 5.1E-06 1.8E-10 74.8 5.2 48 348-406 52-99 (124)
35 2yu4_A E3 SUMO-protein ligase 98.0 9.3E-06 3.2E-10 69.6 6.2 59 347-409 6-66 (94)
36 2kiz_A E3 ubiquitin-protein li 98.0 8.5E-06 2.9E-10 65.3 5.5 51 347-407 13-64 (69)
37 2csy_A Zinc finger protein 183 98.0 6.8E-06 2.3E-10 68.1 5.0 47 347-405 14-60 (81)
38 2yur_A Retinoblastoma-binding 97.9 6.3E-06 2.1E-10 67.2 4.4 48 347-404 14-62 (74)
39 2d8t_A Dactylidin, ring finger 97.9 2E-06 6.8E-11 69.5 1.3 53 347-411 14-66 (71)
40 2ea6_A Ring finger protein 4; 97.9 5.1E-06 1.7E-10 66.3 3.2 50 347-406 14-68 (69)
41 2ect_A Ring finger protein 126 97.9 6.7E-06 2.3E-10 67.6 3.2 55 347-411 14-69 (78)
42 1z6u_A NP95-like ring finger p 97.8 1.4E-05 4.6E-10 74.7 5.1 49 348-407 78-126 (150)
43 2ckl_A Polycomb group ring fin 97.8 9.6E-06 3.3E-10 71.1 3.8 49 347-407 14-63 (108)
44 4ayc_A E3 ubiquitin-protein li 97.8 9E-06 3.1E-10 74.7 3.4 49 347-407 52-100 (138)
45 2kr4_A Ubiquitin conjugation f 97.8 3.3E-05 1.1E-09 64.8 6.5 51 347-409 13-63 (85)
46 2ep4_A Ring finger protein 24; 97.8 1.6E-05 5.6E-10 64.5 4.3 50 347-406 14-64 (74)
47 1iym_A EL5; ring-H2 finger, ub 97.8 1.1E-05 3.8E-10 61.4 3.0 49 347-405 4-54 (55)
48 1rmd_A RAG1; V(D)J recombinati 97.8 3.1E-05 1E-09 68.8 6.2 54 348-412 23-76 (116)
49 2ecj_A Tripartite motif-contai 97.8 1.1E-05 3.7E-10 62.1 2.7 44 347-397 14-57 (58)
50 3knv_A TNF receptor-associated 97.8 4.7E-06 1.6E-10 77.0 0.7 51 346-407 29-79 (141)
51 1x4j_A Ring finger protein 38; 97.7 1.4E-05 4.9E-10 65.1 3.5 50 347-406 22-72 (75)
52 2jmo_A Parkin; IBR, E3 ligase, 97.7 1.2E-05 4.1E-10 66.8 2.9 45 520-570 24-75 (80)
53 3hct_A TNF receptor-associated 97.7 3E-05 1E-09 69.2 5.2 52 347-409 17-68 (118)
54 1jm7_B BARD1, BRCA1-associated 97.7 8.5E-06 2.9E-10 72.6 1.5 64 347-424 21-86 (117)
55 2ecn_A Ring finger protein 141 97.7 3.7E-06 1.3E-10 67.6 -1.0 49 347-408 14-62 (70)
56 1bor_A Transcription factor PM 97.7 8.8E-06 3E-10 62.6 0.9 45 347-406 5-49 (56)
57 2l0b_A E3 ubiquitin-protein li 97.7 2.2E-05 7.5E-10 66.7 3.5 50 347-406 39-89 (91)
58 1chc_A Equine herpes virus-1 r 97.6 3.9E-05 1.3E-09 61.1 4.2 47 348-405 5-51 (68)
59 1v87_A Deltex protein 2; ring- 97.6 4.7E-05 1.6E-09 67.2 4.7 53 349-406 26-94 (114)
60 1wgm_A Ubiquitin conjugation f 97.6 6.4E-05 2.2E-09 64.9 4.8 50 347-408 21-71 (98)
61 3l11_A E3 ubiquitin-protein li 97.5 1.6E-05 5.5E-10 70.5 0.9 48 348-406 15-62 (115)
62 2kre_A Ubiquitin conjugation f 97.5 4E-05 1.4E-09 66.4 3.1 50 347-408 28-77 (100)
63 3htk_C E3 SUMO-protein ligase 97.5 3.4E-05 1.2E-09 77.5 2.5 55 347-409 180-235 (267)
64 2ecl_A Ring-box protein 2; RNF 97.4 7E-05 2.4E-09 62.1 3.4 51 349-409 16-79 (81)
65 2ckl_B Ubiquitin ligase protei 97.4 0.0001 3.5E-09 69.6 4.4 48 348-406 54-102 (165)
66 4ic3_A E3 ubiquitin-protein li 97.4 6.2E-05 2.1E-09 61.3 2.2 44 347-406 23-67 (74)
67 2c2l_A CHIP, carboxy terminus 97.2 0.00024 8E-09 72.4 4.9 51 347-408 207-257 (281)
68 2d8s_A Cellular modulator of i 97.2 0.00036 1.2E-08 57.8 5.0 53 348-408 15-72 (80)
69 2ecg_A Baculoviral IAP repeat- 97.2 0.00014 4.9E-09 59.3 2.3 44 347-406 24-68 (75)
70 2f42_A STIP1 homology and U-bo 97.1 0.00046 1.6E-08 65.9 5.3 52 346-408 104-155 (179)
71 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00028 9.5E-09 63.5 3.3 57 346-412 70-131 (133)
72 2y1n_A E3 ubiquitin-protein li 97.0 0.00052 1.8E-08 73.2 5.1 52 347-409 331-382 (389)
73 3dpl_R Ring-box protein 1; ubi 96.9 0.0006 2E-08 59.6 4.2 50 347-406 36-101 (106)
74 2vje_B MDM4 protein; proto-onc 96.9 0.00049 1.7E-08 54.1 2.9 48 348-405 7-55 (63)
75 2yho_A E3 ubiquitin-protein li 96.9 0.00029 1E-08 58.1 1.5 44 347-406 17-61 (79)
76 2vje_A E3 ubiquitin-protein li 96.8 0.00053 1.8E-08 54.1 2.9 46 348-405 8-56 (64)
77 2ea5_A Cell growth regulator w 96.8 0.00061 2.1E-08 54.5 2.6 44 347-406 14-58 (68)
78 4a0k_B E3 ubiquitin-protein li 95.9 0.0014 4.8E-08 58.2 0.0 48 349-406 49-112 (117)
79 3t6p_A Baculoviral IAP repeat- 95.8 0.0025 8.5E-08 67.3 1.7 45 346-406 293-338 (345)
80 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.086 3E-06 54.8 12.5 58 348-407 308-374 (381)
81 2ct0_A Non-SMC element 1 homol 95.3 0.012 4E-07 47.8 3.4 53 344-406 11-64 (74)
82 2bay_A PRE-mRNA splicing facto 94.5 0.035 1.2E-06 43.2 4.1 52 349-412 4-56 (61)
83 3hcs_A TNF receptor-associated 92.6 0.029 9.9E-07 52.8 0.9 35 433-472 15-49 (170)
84 2jrp_A Putative cytoplasmic pr 92.3 0.072 2.4E-06 43.7 2.7 35 603-645 33-69 (81)
85 3vk6_A E3 ubiquitin-protein li 90.6 0.21 7.3E-06 42.5 4.0 47 349-406 2-49 (101)
86 1wim_A KIAA0161 protein; ring 90.3 0.039 1.3E-06 46.5 -0.8 48 435-484 4-60 (94)
87 1vyx_A ORF K3, K3RING; zinc-bi 90.3 0.3 1E-05 37.7 4.3 49 347-405 5-58 (60)
88 2cs3_A Protein C14ORF4, MY039 88.7 0.51 1.8E-05 38.1 4.6 48 347-397 14-63 (93)
89 2jun_A Midline-1; B-BOX, TRIM, 88.1 0.25 8.7E-06 41.9 2.7 33 348-380 3-36 (101)
90 3vk6_A E3 ubiquitin-protein li 87.8 0.1 3.4E-06 44.4 -0.0 52 522-617 2-53 (101)
91 1e4u_A Transcriptional repress 87.3 0.26 8.9E-06 40.1 2.2 45 434-479 9-55 (78)
92 3ng2_A RNF4, snurf, ring finge 86.1 0.21 7.1E-06 39.2 1.0 38 434-471 8-47 (71)
93 1iym_A EL5; ring-H2 finger, ub 86.0 0.55 1.9E-05 34.7 3.3 36 435-471 4-39 (55)
94 3j20_Y 30S ribosomal protein S 85.7 0.36 1.2E-05 35.9 2.0 31 519-549 17-47 (50)
95 1vq8_Z 50S ribosomal protein L 85.4 0.83 2.8E-05 37.7 4.3 31 520-550 26-56 (83)
96 2ect_A Ring finger protein 126 85.3 0.58 2E-05 37.5 3.3 35 435-471 14-48 (78)
97 4ayc_A E3 ubiquitin-protein li 85.2 0.93 3.2E-05 40.8 5.0 31 521-557 53-83 (138)
98 2ea6_A Ring finger protein 4; 84.7 0.24 8.2E-06 38.5 0.7 38 434-471 13-52 (69)
99 3nw0_A Non-structural maintena 84.2 0.41 1.4E-05 47.6 2.3 133 254-407 90-230 (238)
100 2a7l_A Hypothetical ubiquitin- 83.9 4.4 0.00015 36.5 8.8 22 232-254 73-94 (136)
101 2jrp_A Putative cytoplasmic pr 83.7 0.6 2E-05 38.2 2.6 36 602-639 3-43 (81)
102 1x4j_A Ring finger protein 38; 83.2 0.38 1.3E-05 38.3 1.3 34 521-557 23-56 (75)
103 2yur_A Retinoblastoma-binding 83.0 0.45 1.5E-05 37.9 1.7 32 521-557 15-46 (74)
104 1g25_A CDK-activating kinase a 82.3 0.37 1.3E-05 37.2 0.9 33 437-470 4-37 (65)
105 2ep4_A Ring finger protein 24; 82.0 0.57 2E-05 37.1 1.9 35 435-471 14-48 (74)
106 1t1h_A Gspef-atpub14, armadill 81.0 0.83 2.8E-05 36.5 2.6 33 434-471 6-38 (78)
107 2ecv_A Tripartite motif-contai 81.0 1.6 5.3E-05 35.1 4.3 33 434-471 17-49 (85)
108 3bzh_A Ubiquitin-conjugating e 80.8 18 0.0006 34.5 12.3 22 232-254 97-118 (194)
109 2fo3_A Ubiquitin-conjugating e 80.5 6.8 0.00023 34.5 8.7 22 232-254 55-76 (125)
110 1jm7_A BRCA1, breast cancer ty 80.5 0.88 3E-05 39.0 2.7 31 521-557 21-51 (112)
111 1pft_A TFIIB, PFTFIIBN; N-term 80.0 0.9 3.1E-05 33.5 2.2 29 521-549 5-34 (50)
112 2l0b_A E3 ubiquitin-protein li 79.4 0.12 4E-06 43.3 -3.2 35 435-471 39-73 (91)
113 3fl2_A E3 ubiquitin-protein li 79.1 0.61 2.1E-05 41.1 1.3 31 521-557 52-82 (124)
114 2k4x_A 30S ribosomal protein S 79.1 0.61 2.1E-05 35.3 1.1 31 519-549 16-46 (55)
115 2c4o_A Ubiquitin-conjugating e 79.1 18 0.00061 33.5 11.5 22 232-254 68-89 (165)
116 1zdn_A Ubiquitin-conjugating e 79.0 8.3 0.00028 35.5 9.1 22 232-254 62-83 (158)
117 1pft_A TFIIB, PFTFIIBN; N-term 78.8 1.3 4.4E-05 32.6 2.8 30 600-629 4-34 (50)
118 2d8t_A Dactylidin, ring finger 78.6 0.81 2.8E-05 36.0 1.7 31 521-557 15-45 (71)
119 2ayv_A Ubiquitin-conjugating e 78.4 23 0.00078 32.8 12.0 22 232-254 70-91 (166)
120 2h2y_A Ubiquitin-conjugating e 78.1 11 0.00039 33.6 9.5 22 232-254 69-90 (136)
121 4gpr_A Ubiquitin-conjugating e 77.3 25 0.00085 31.9 11.8 22 232-254 53-74 (151)
122 2c2v_B Ubiquitin-conjugating e 75.4 12 0.00042 34.2 9.1 22 232-254 54-75 (154)
123 3lrq_A E3 ubiquitin-protein li 75.4 0.84 2.9E-05 38.7 1.0 33 602-639 23-55 (100)
124 2ysj_A Tripartite motif-contai 75.2 1.1 3.8E-05 34.1 1.6 34 434-472 18-51 (63)
125 2aak_A UBC1, ubiquitin conjuga 75.1 17 0.00057 33.1 9.9 22 232-254 53-74 (152)
126 2jne_A Hypothetical protein YF 74.6 1.7 5.9E-05 36.5 2.6 36 602-639 33-73 (101)
127 1z2u_A Ubiquitin-conjugating e 74.1 22 0.00074 32.2 10.4 22 232-254 53-74 (150)
128 2e2c_A Ubiquitin conjugating e 73.7 16 0.00056 33.3 9.5 22 232-254 58-79 (156)
129 1yh2_A HSPC150 protein similar 73.7 14 0.00047 34.4 9.1 22 232-254 53-74 (169)
130 2ysl_A Tripartite motif-contai 73.4 1.4 4.9E-05 34.4 1.9 41 434-479 18-62 (73)
131 1fxt_A Ubiquitin-conjugating e 73.1 13 0.00043 33.8 8.5 22 232-254 51-72 (149)
132 3l11_A E3 ubiquitin-protein li 72.7 1.6 5.4E-05 37.7 2.2 30 522-557 16-45 (115)
133 3fn1_B NEDD8-conjugating enzym 72.5 17 0.00059 33.6 9.5 22 232-254 63-84 (167)
134 2ecj_A Tripartite motif-contai 72.5 1.6 5.5E-05 32.4 1.9 33 434-471 13-45 (58)
135 3h8k_A Ubiquitin-conjugating e 72.5 17 0.00059 33.4 9.4 22 232-254 53-74 (164)
136 2ct2_A Tripartite motif protei 72.1 1.5 5E-05 35.7 1.7 37 434-471 13-49 (88)
137 2jr6_A UPF0434 protein NMA0874 71.6 2.3 7.9E-05 33.6 2.6 33 520-552 7-39 (68)
138 2r0j_A Ubiquitin carrier prote 71.0 12 0.0004 34.1 7.8 22 232-254 50-71 (149)
139 2bep_A Ubiquitin-conjugating e 70.6 17 0.0006 33.2 9.0 22 232-254 60-81 (159)
140 3rz3_A Ubiquitin-conjugating e 70.5 18 0.00062 34.0 9.3 22 232-254 57-78 (183)
141 2ecy_A TNF receptor-associated 70.4 1.4 4.8E-05 33.9 1.2 41 434-479 13-55 (66)
142 2pwq_A Ubiquitin conjugating e 70.0 17 0.00058 35.3 9.1 22 232-254 72-93 (216)
143 1ayz_A UBC2, ubiquitin-conjuga 70.0 12 0.00041 34.8 7.8 22 232-254 53-74 (169)
144 1wzv_A Ubiquitin-conjugating e 70.0 17 0.00059 33.1 8.8 22 232-254 53-74 (155)
145 1z6u_A NP95-like ring finger p 69.9 2.1 7.2E-05 39.2 2.4 31 436-471 78-108 (150)
146 2jr6_A UPF0434 protein NMA0874 69.7 2.3 7.8E-05 33.6 2.3 29 601-629 8-36 (68)
147 1jat_A Ubiquitin-conjugating e 69.1 11 0.00038 34.4 7.3 22 232-254 54-75 (155)
148 1yrv_A Ubiquitin-conjugating l 69.0 18 0.00062 33.6 8.7 22 232-254 72-93 (169)
149 2d8v_A Zinc finger FYVE domain 69.0 1.9 6.4E-05 33.6 1.5 35 434-474 6-41 (67)
150 3hct_A TNF receptor-associated 68.4 1.4 4.7E-05 38.5 0.8 31 521-557 18-48 (118)
151 3qt1_I DNA-directed RNA polyme 66.4 2.2 7.4E-05 38.4 1.7 32 518-549 21-56 (133)
152 2awf_A Ubiquitin-conjugating e 66.3 29 0.00099 32.3 9.6 22 232-254 67-88 (172)
153 1vq8_Z 50S ribosomal protein L 66.2 1.8 6.1E-05 35.7 1.0 30 601-630 27-56 (83)
154 1i7k_A Ubiquitin-conjugating e 66.1 17 0.00057 34.2 7.9 22 232-254 79-100 (179)
155 2akl_A PHNA-like protein PA012 65.6 2.8 9.7E-05 37.1 2.2 32 432-463 23-54 (138)
156 2xeu_A Ring finger protein 4; 65.5 1.3 4.6E-05 33.5 0.1 36 436-471 3-40 (64)
157 2ucz_A UBC7, ubiquitin conjuga 64.2 32 0.0011 31.6 9.4 22 232-254 54-75 (165)
158 3h0g_I DNA-directed RNA polyme 64.1 4.1 0.00014 35.5 3.0 30 520-549 3-36 (113)
159 3kpa_A Probable ubiquitin fold 64.1 3.1 0.00011 38.0 2.2 21 232-253 87-107 (168)
160 2k4x_A 30S ribosomal protein S 63.9 3.7 0.00012 31.0 2.3 29 601-629 18-46 (55)
161 2js4_A UPF0434 protein BB2007; 63.4 4.6 0.00016 32.0 2.9 33 520-552 7-39 (70)
162 2hf1_A Tetraacyldisaccharide-1 62.9 4.3 0.00015 32.0 2.6 33 520-552 7-39 (68)
163 2f4w_A Ubiquitin-conjugating e 62.2 20 0.00069 33.9 7.7 22 232-254 63-84 (187)
164 4ds2_A Ubiquitin-conjugating e 62.1 24 0.00082 32.6 8.1 22 232-254 71-92 (167)
165 2egp_A Tripartite motif-contai 61.9 2.7 9.3E-05 33.3 1.3 35 433-472 9-43 (79)
166 2kiz_A E3 ubiquitin-protein li 61.9 2.8 9.6E-05 32.4 1.4 35 435-471 13-47 (69)
167 1jm7_B BARD1, BRCA1-associated 61.9 3.1 0.00011 36.1 1.8 40 435-479 21-60 (117)
168 3o2u_A NEDD8-conjugating enzym 61.5 43 0.0015 31.6 10.0 21 232-253 82-102 (190)
169 2y9m_A Ubiquitin-conjugating e 61.2 32 0.0011 31.9 8.8 22 232-254 67-88 (172)
170 2djb_A Polycomb group ring fin 61.2 2.6 8.9E-05 33.0 1.1 33 601-638 15-47 (72)
171 3rcz_B SUMO-conjugating enzyme 60.8 23 0.00078 32.7 7.7 22 232-254 64-85 (163)
172 2pk7_A Uncharacterized protein 60.0 5 0.00017 31.8 2.5 33 520-552 7-39 (69)
173 3v43_A Histone acetyltransfera 59.7 27 0.00092 30.0 7.5 81 348-470 5-94 (112)
174 2d9s_A CBL E3 ubiquitin protei 59.4 5.9 0.0002 29.5 2.6 30 111-140 10-49 (53)
175 1twf_I B12.6, DNA-directed RNA 59.3 4.4 0.00015 35.8 2.3 31 520-550 3-37 (122)
176 1rmd_A RAG1; V(D)J recombinati 59.2 3.4 0.00011 35.7 1.5 30 522-557 24-53 (116)
177 2a20_A Regulating synaptic mem 59.1 6.5 0.00022 29.9 2.8 36 601-638 9-44 (62)
178 1bor_A Transcription factor PM 58.9 7.7 0.00026 28.8 3.3 39 434-479 4-42 (56)
179 3j20_Y 30S ribosomal protein S 58.9 4.4 0.00015 30.0 1.8 28 601-628 19-46 (50)
180 2f4z_A Tgtwinscan_2721 - E2 do 58.8 25 0.00087 33.4 7.8 22 232-254 94-115 (193)
181 2jne_A Hypothetical protein YF 58.7 7.3 0.00025 32.7 3.3 34 522-557 33-71 (101)
182 2z6o_A UFM1-conjugating enzyme 57.9 4.5 0.00016 37.6 2.2 20 232-252 85-104 (172)
183 2ooa_A E3 ubiquitin-protein li 57.4 7.6 0.00026 28.8 2.9 29 111-139 12-50 (52)
184 1chc_A Equine herpes virus-1 r 57.4 4.2 0.00014 31.2 1.7 34 600-638 4-37 (68)
185 2hf1_A Tetraacyldisaccharide-1 56.9 5.4 0.00018 31.5 2.2 29 601-629 8-36 (68)
186 2c2l_A CHIP, carboxy terminus 56.5 4.3 0.00015 40.4 2.0 33 434-471 206-238 (281)
187 3qt1_I DNA-directed RNA polyme 56.4 6 0.0002 35.5 2.7 32 432-463 20-56 (133)
188 2js4_A UPF0434 protein BB2007; 56.3 5.3 0.00018 31.7 2.1 30 601-630 8-37 (70)
189 2ckl_B Ubiquitin ligase protei 56.1 3.3 0.00011 38.2 1.0 33 602-639 55-87 (165)
190 2y1n_A E3 ubiquitin-protein li 56.1 5 0.00017 42.6 2.5 32 520-557 331-362 (389)
191 2jny_A Uncharacterized BCR; st 56.0 6.7 0.00023 30.8 2.6 35 520-554 9-43 (67)
192 2ecm_A Ring finger and CHY zin 55.9 5 0.00017 29.2 1.8 37 601-639 5-41 (55)
193 2pk7_A Uncharacterized protein 55.5 5.8 0.0002 31.4 2.2 29 601-629 8-36 (69)
194 2ckl_A Polycomb group ring fin 55.2 3.6 0.00012 35.0 1.0 34 601-639 15-48 (108)
195 2y43_A E3 ubiquitin-protein li 55.2 3.6 0.00012 34.4 1.0 33 602-639 23-55 (99)
196 2g3q_A Protein YBL047C; endocy 54.6 5.6 0.00019 28.0 1.8 26 110-135 4-39 (43)
197 2z5d_A Ubiquitin-conjugating e 54.0 6.1 0.00021 37.3 2.5 22 232-254 70-91 (179)
198 1zuo_A Hypothetical protein LO 54.0 8.4 0.00029 36.5 3.5 22 232-254 91-112 (186)
199 2ecn_A Ring finger protein 141 53.4 4.2 0.00014 31.4 1.1 34 434-473 13-46 (70)
200 3e46_A Ubiquitin-conjugating e 53.3 50 0.0017 32.8 9.2 21 232-253 109-129 (253)
201 2ecw_A Tripartite motif-contai 52.4 4.2 0.00014 32.5 0.9 32 435-471 18-49 (85)
202 1dv0_A DNA repair protein HHR2 51.1 7.6 0.00026 28.2 2.1 26 110-135 4-39 (47)
203 3k9o_A Ubiquitin-conjugating e 51.0 58 0.002 30.9 9.0 22 232-254 57-78 (201)
204 2yw8_A RUN and FYVE domain-con 50.8 10 0.00034 30.9 3.0 37 432-469 15-51 (82)
205 1z60_A TFIIH basal transcripti 50.8 2.9 0.0001 32.1 -0.3 35 522-559 16-50 (59)
206 1z96_A DNA-damage, UBA-domain 50.4 9.4 0.00032 26.1 2.4 26 110-135 4-39 (40)
207 1weo_A Cellulose synthase, cat 49.5 14 0.00047 30.6 3.5 34 436-469 16-51 (93)
208 1jat_B Ubiquitin-conjugating e 49.0 12 0.00041 33.5 3.5 22 232-254 59-80 (138)
209 1dl6_A Transcription factor II 48.9 12 0.00041 28.4 2.9 28 521-548 11-39 (58)
210 2jny_A Uncharacterized BCR; st 48.9 8.3 0.00029 30.3 2.1 29 601-629 10-38 (67)
211 1ify_A HHR23A, UV excision rep 48.8 10 0.00036 27.6 2.5 27 109-135 7-43 (49)
212 2q0v_A Ubiquitin-conjugating e 48.8 12 0.00041 34.4 3.5 22 232-254 74-95 (156)
213 2onu_A Ubiquitin-conjugating e 48.2 12 0.00042 34.1 3.5 22 232-254 48-69 (152)
214 1c4z_D UBCH7, ubiquitin conjug 47.8 12 0.00043 34.0 3.5 22 232-254 51-72 (154)
215 2akl_A PHNA-like protein PA012 47.5 8.2 0.00028 34.2 2.0 33 516-549 22-54 (138)
216 3ceg_A Baculoviral IAP repeat- 47.4 65 0.0022 33.1 9.1 22 232-254 129-150 (323)
217 1z60_A TFIIH basal transcripti 47.3 5.4 0.00019 30.5 0.8 40 437-478 16-56 (59)
218 2gjd_A Ubiquitin-conjugating e 46.8 12 0.00042 34.2 3.3 22 232-254 58-79 (157)
219 1twf_I B12.6, DNA-directed RNA 46.8 8.8 0.0003 33.8 2.2 28 602-629 5-36 (122)
220 3h0g_L DNA-directed RNA polyme 46.4 9.3 0.00032 29.6 2.0 27 437-463 22-48 (63)
221 3h0g_I DNA-directed RNA polyme 46.1 9.4 0.00032 33.1 2.2 28 602-629 5-36 (113)
222 1y8x_A Ubiquitin-conjugating e 46.0 14 0.00048 34.0 3.6 22 232-254 53-74 (160)
223 2grr_A Ubiquitin-conjugating e 46.0 14 0.00047 34.1 3.5 22 232-254 61-82 (161)
224 3knv_A TNF receptor-associated 45.9 6.6 0.00023 35.4 1.3 43 432-479 27-71 (141)
225 3ztg_A E3 ubiquitin-protein li 45.8 5.5 0.00019 32.6 0.6 34 601-639 13-46 (92)
226 2nvu_C NEDD8-conjugating enzym 45.6 14 0.00049 34.7 3.6 22 232-254 73-94 (180)
227 3r3q_A Suppressor protein STP2 45.3 86 0.0029 28.9 8.8 22 232-254 83-104 (162)
228 2dak_A Ubiquitin carboxyl-term 44.6 11 0.00039 28.9 2.2 31 105-135 4-44 (63)
229 2a4d_A Ubiquitin-conjugating e 44.6 15 0.00051 33.9 3.5 22 232-254 78-99 (160)
230 2csy_A Zinc finger protein 183 44.5 7.8 0.00027 30.9 1.4 33 601-639 15-47 (81)
231 1wji_A Tudor domain containing 44.2 14 0.00049 28.5 2.8 28 109-136 8-45 (63)
232 3u5c_f 40S ribosomal protein S 44.1 8.9 0.00031 35.1 1.9 32 521-552 118-151 (152)
233 4ddg_A Ubiquitin-conjugating e 44.0 1.2E+02 0.0042 31.9 11.1 21 232-253 52-72 (399)
234 1tte_A Ubiquitin-conjugating e 43.7 57 0.0019 31.5 7.7 22 232-254 52-73 (215)
235 2d8v_A Zinc finger FYVE domain 43.7 11 0.00039 29.3 2.1 32 347-381 7-39 (67)
236 1v87_A Deltex protein 2; ring- 43.0 8.4 0.00029 32.9 1.4 38 601-638 25-74 (114)
237 2ecl_A Ring-box protein 2; RNF 42.8 8.9 0.00031 30.8 1.5 43 437-479 16-69 (81)
238 1vk6_A NADH pyrophosphatase; 1 42.8 33 0.0011 34.3 6.0 31 518-548 104-134 (269)
239 1joc_A EEA1, early endosomal a 42.7 13 0.00045 32.8 2.7 35 521-557 69-103 (125)
240 1x4u_A Zinc finger, FYVE domai 42.0 15 0.00051 29.9 2.7 35 521-557 14-48 (84)
241 2zet_C Melanophilin; complex, 41.8 50 0.0017 30.1 6.5 36 520-556 67-102 (153)
242 1wfl_A Zinc finger protein 216 41.7 15 0.00053 29.3 2.6 31 601-636 25-55 (74)
243 3zqs_A E3 ubiquitin-protein li 41.7 62 0.0021 30.5 7.3 42 232-274 40-87 (186)
244 2yu4_A E3 SUMO-protein ligase 41.7 8.7 0.0003 31.9 1.3 33 435-471 6-38 (94)
245 1yf9_A Ubiquitin carrier prote 41.4 18 0.00061 33.7 3.5 21 232-253 57-77 (171)
246 1zbd_B Rabphilin-3A; G protein 41.1 38 0.0013 30.2 5.5 37 520-557 54-90 (134)
247 1gh9_A 8.3 kDa protein (gene M 40.8 15 0.00051 29.2 2.4 28 521-550 4-31 (71)
248 1twf_L ABC10-alpha, DNA-direct 40.7 10 0.00035 30.0 1.4 27 436-462 28-54 (70)
249 2yw8_A RUN and FYVE domain-con 40.2 16 0.00054 29.6 2.6 35 521-557 19-53 (82)
250 1wg2_A Zinc finger (AN1-like) 39.9 15 0.00051 28.5 2.2 33 600-637 14-46 (64)
251 2csz_A Synaptotagmin-like prot 39.7 13 0.00045 29.9 1.9 37 435-471 24-60 (76)
252 2bwb_A Ubiquitin-like protein 39.4 13 0.00044 26.8 1.7 25 111-135 8-43 (46)
253 3a43_A HYPD, hydrogenase nicke 38.8 19 0.00064 32.4 3.1 50 413-462 39-116 (139)
254 1wfk_A Zinc finger, FYVE domai 38.4 15 0.00052 30.3 2.2 35 521-557 9-43 (88)
255 2kpi_A Uncharacterized protein 38.3 16 0.00053 27.6 2.1 27 601-629 10-38 (56)
256 3obq_A Tumor susceptibility ge 38.2 84 0.0029 28.4 7.4 22 232-254 71-92 (146)
257 1wii_A Hypothetical UPF0222 pr 37.6 18 0.00061 29.8 2.5 30 600-629 22-57 (85)
258 1wfh_A Zinc finger (AN1-like) 36.8 19 0.00064 28.0 2.3 33 600-637 14-46 (64)
259 3j21_i 50S ribosomal protein L 36.7 33 0.0011 28.0 3.9 29 521-549 35-63 (83)
260 2knz_A Ubiquilin-4; cytoplasm, 36.5 16 0.00053 27.1 1.8 27 110-136 11-48 (53)
261 1vg5_A RSGI RUH-014, rhomboid 36.4 15 0.00051 29.3 1.8 29 107-135 26-64 (73)
262 3t7l_A Zinc finger FYVE domain 36.3 20 0.00068 29.6 2.7 35 521-557 20-54 (90)
263 3cc2_Z 50S ribosomal protein L 36.3 36 0.0012 29.6 4.3 30 520-549 59-88 (116)
264 1weo_A Cellulose synthase, cat 36.3 36 0.0012 28.1 4.0 49 348-405 16-69 (93)
265 2hlw_A Ubiquitin-conjugating e 35.8 19 0.00066 33.5 2.8 22 232-254 88-109 (170)
266 2kpi_A Uncharacterized protein 35.5 23 0.00079 26.6 2.6 27 521-549 10-38 (56)
267 3u6p_A Formamidopyrimidine-DNA 35.3 16 0.00054 36.8 2.2 26 601-626 245-272 (273)
268 1zbd_B Rabphilin-3A; G protein 35.2 72 0.0025 28.4 6.3 41 597-638 51-91 (134)
269 2xzf_A Formamidopyrimidine-DNA 35.0 16 0.00055 36.7 2.2 27 601-627 242-270 (271)
270 1k82_A Formamidopyrimidine-DNA 34.5 17 0.00057 36.5 2.2 26 601-626 240-267 (268)
271 3t6p_A Baculoviral IAP repeat- 34.5 33 0.0011 35.7 4.6 31 521-557 295-326 (345)
272 2xzm_9 RPS31E; ribosome, trans 34.4 16 0.00054 34.7 1.9 30 521-551 113-143 (189)
273 1ee8_A MUTM (FPG) protein; bet 34.3 17 0.0006 36.3 2.3 27 601-627 235-263 (266)
274 1k3x_A Endonuclease VIII; hydr 34.1 17 0.00058 36.3 2.2 26 601-626 234-261 (262)
275 1y02_A CARP2, FYVE-ring finger 34.0 11 0.00037 33.2 0.7 35 521-557 19-53 (120)
276 2jun_A Midline-1; B-BOX, TRIM, 33.9 13 0.00045 30.9 1.2 35 437-473 4-38 (101)
277 1x4u_A Zinc finger, FYVE domai 33.9 25 0.00087 28.5 2.9 35 434-469 12-46 (84)
278 2dah_A Ubiquilin-3; UBA domain 33.4 16 0.00054 27.3 1.4 27 111-137 10-47 (54)
279 4a17_Y RPL37A, 60S ribosomal p 33.3 45 0.0015 28.3 4.3 29 521-549 36-64 (103)
280 1dvp_A HRS, hepatocyte growth 33.3 19 0.00065 34.8 2.4 34 522-557 162-195 (220)
281 2kr4_A Ubiquitin conjugation f 33.3 14 0.00047 30.0 1.2 42 433-479 11-53 (85)
282 1z2q_A LM5-1; membrane protein 32.6 26 0.00088 28.5 2.7 35 521-557 21-55 (84)
283 1joc_A EEA1, early endosomal a 32.6 19 0.00064 31.8 2.0 34 435-469 68-101 (125)
284 1ffk_W Ribosomal protein L37AE 32.3 42 0.0014 26.7 3.7 30 520-549 26-55 (73)
285 2jy5_A Ubiquilin-1; UBA, alter 32.0 19 0.00066 26.5 1.7 27 109-135 11-48 (52)
286 1wfp_A Zinc finger (AN1-like) 32.0 24 0.00082 28.2 2.3 33 599-636 23-55 (74)
287 3m7n_A Putative uncharacterize 31.8 19 0.00063 33.8 1.9 24 602-627 141-164 (179)
288 1z2q_A LM5-1; membrane protein 31.6 29 0.00099 28.2 2.9 35 434-469 19-53 (84)
289 2dkl_A Trinucleotide repeat co 30.8 28 0.00097 28.5 2.7 26 109-134 20-55 (85)
290 2zet_C Melanophilin; complex, 30.5 1E+02 0.0034 28.1 6.6 36 600-636 67-102 (153)
291 1vej_A Riken cDNA 4931431F19; 30.4 24 0.00082 28.2 2.1 25 111-135 30-65 (74)
292 1wfk_A Zinc finger, FYVE domai 30.2 33 0.0011 28.2 3.0 34 435-469 8-41 (88)
293 3iz5_m 60S ribosomal protein L 30.2 41 0.0014 28.0 3.5 29 521-549 36-64 (92)
294 3m7n_A Putative uncharacterize 30.1 24 0.00083 33.0 2.5 26 522-549 141-166 (179)
295 1k81_A EIF-2-beta, probable tr 30.0 21 0.00071 24.3 1.4 26 603-628 2-30 (36)
296 1y02_A CARP2, FYVE-ring finger 29.7 27 0.00091 30.6 2.5 35 436-471 19-53 (120)
297 3htk_C E3 SUMO-protein ligase 29.5 14 0.00047 37.1 0.6 45 435-483 180-227 (267)
298 1wr1_B Ubiquitin-like protein 29.1 20 0.0007 27.2 1.4 26 111-136 18-54 (58)
299 2zjr_Z 50S ribosomal protein L 28.6 25 0.00087 26.8 1.8 27 432-462 26-52 (60)
300 4ayb_P DNA-directed RNA polyme 28.3 30 0.001 25.1 2.0 27 438-464 5-34 (48)
301 3izc_m 60S ribosomal protein R 27.7 49 0.0017 27.5 3.5 29 521-549 36-64 (92)
302 2kre_A Ubiquitin conjugation f 27.2 18 0.0006 30.5 0.8 43 432-479 25-68 (100)
303 1wii_A Hypothetical UPF0222 pr 27.2 23 0.00079 29.1 1.5 30 520-549 22-57 (85)
304 1wff_A Riken cDNA 2810002D23 p 27.1 33 0.0011 28.1 2.4 33 600-636 24-56 (85)
305 3jyw_9 60S ribosomal protein L 26.9 27 0.00092 27.8 1.7 29 521-549 26-54 (72)
306 2o35_A Hypothetical protein DU 26.3 31 0.0011 29.0 2.1 17 372-388 43-59 (105)
307 1dvp_A HRS, hepatocyte growth 26.2 28 0.00095 33.6 2.2 32 437-469 162-193 (220)
308 2f42_A STIP1 homology and U-bo 26.2 33 0.0011 32.2 2.6 35 432-471 102-136 (179)
309 1vfy_A Phosphatidylinositol-3- 25.4 36 0.0012 26.8 2.3 31 438-469 13-43 (73)
310 3t7l_A Zinc finger FYVE domain 25.2 31 0.0011 28.5 1.9 33 436-469 20-52 (90)
311 2juj_A E3 ubiquitin-protein li 24.4 45 0.0015 24.9 2.4 31 110-140 7-47 (56)
312 3fyb_A Protein of unknown func 24.1 33 0.0011 28.8 1.8 16 372-387 42-57 (104)
313 1qxf_A GR2, 30S ribosomal prot 24.0 63 0.0022 25.1 3.3 34 522-555 8-42 (66)
314 3v2d_5 50S ribosomal protein L 23.5 38 0.0013 25.8 2.0 23 520-547 29-51 (60)
315 2oo9_A E3 ubiquitin-protein li 23.1 52 0.0018 23.6 2.5 30 110-139 4-43 (46)
316 3zyq_A Hepatocyte growth facto 23.0 35 0.0012 33.1 2.2 31 438-469 166-196 (226)
317 2qsf_X RAD23, UV excision repa 22.7 46 0.0016 31.0 2.8 31 105-135 125-165 (171)
318 2d74_B Translation initiation 22.4 56 0.0019 29.7 3.2 56 501-562 90-148 (148)
319 1wgm_A Ubiquitin conjugation f 22.4 27 0.00093 29.2 1.1 42 433-479 19-62 (98)
320 3zyq_A Hepatocyte growth facto 22.4 3.3E+02 0.011 26.0 9.2 32 349-380 165-198 (226)
321 4esj_A Type-2 restriction enzy 22.0 56 0.0019 32.0 3.3 41 508-549 22-66 (257)
322 3j20_W 30S ribosomal protein S 22.0 75 0.0026 24.5 3.3 33 522-554 16-49 (63)
323 2ysm_A Myeloid/lymphoid or mix 21.7 54 0.0018 27.8 2.9 32 348-379 7-39 (111)
324 2cpw_A CBL-interacting protein 21.3 50 0.0017 25.4 2.3 35 109-146 18-63 (64)
325 2dna_A Unnamed protein product 20.9 48 0.0016 25.9 2.1 27 111-137 20-57 (67)
326 2kdx_A HYPA, hydrogenase/ureas 20.8 28 0.00096 30.2 0.9 28 434-462 71-99 (119)
327 2dlq_A GLI-kruppel family memb 20.3 1.9E+02 0.0066 23.5 6.3 88 348-464 7-105 (124)
No 1
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.1e-20 Score=170.45 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=91.2
Q ss_pred hhchHHHHHHHHHHHHHhcCCCeeeeccC------CCCceEEEEEeeccCCCceEEeecCCCCccccCCCCCCCcccccc
Q 006225 152 LRINDQSQGDELLALESIYGDSVFILDRQ------RDLRSCQIHVHVETLDGLTVTAKLNSSTDLDARSESSDDFSYSFK 225 (655)
Q Consensus 152 ~~~n~e~Q~~EleaLeSIY~d~~~~~~~~------~~~~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (655)
|.++.|+|++||+||+|||+|++..++.. +....|+|.|.....+ +
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~----------------------~------ 59 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKE----------------------P------ 59 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCS----------------------S------
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCC----------------------C------
Confidence 56788999999999999999998876542 1224566665421100 0
Q ss_pred cccCCcEEEEEEcCCCCCCCCCCeEEee-cccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhccccc
Q 006225 226 VQYLPPIVLTCLLPKSYPSHLPPYFTIS-ARWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSLSY 296 (655)
Q Consensus 226 v~~LPpi~L~~~lP~~YPs~~pP~~~l~-s~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~~~ 296 (655)
.-.+|.|.|.||++||++ ||.|.|. +.||++.+++.|.+.|.++|+++.|++|||+||+||||.+..+
T Consensus 60 --~~~~~~L~~~~p~~YP~~-~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 60 --VESSITLHFAMTPMYPYT-APEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp --CCCEEEEEEECCSSTTSS-CCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred --CceEEEEEEECCCCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 002489999999999976 9999995 5799999999999999999999999999999999999998765
No 2
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=167.53 Aligned_cols=114 Identities=24% Similarity=0.320 Sum_probs=93.0
Q ss_pred hhchHHHHHHHHHHHHHhcCCCeeeeccCCCCceEEEEEeeccCCCceEEeecCCCCccccCCCCCCCcccccccccCCc
Q 006225 152 LRINDQSQGDELLALESIYGDSVFILDRQRDLRSCQIHVHVETLDGLTVTAKLNSSTDLDARSESSDDFSYSFKVQYLPP 231 (655)
Q Consensus 152 ~~~n~e~Q~~EleaLeSIY~d~~~~~~~~~~~~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~LPp 231 (655)
|.++.|+|.+||+||+|||+|++..++.. ...|+|.|..+..+ ++ ..++
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~~~~~--~~~~~i~i~~~~~~--------------------~~---------~~~~ 56 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTVLSEN--PPSFTITVTSEAGE--------------------ND---------ETVQ 56 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEECCSS--SCEEEECCBCCCCT--------------------TS---------CCCB
T ss_pred CCChHHHHHHHHHHHHHHccCceEEccCC--CCEEEEEEecCCCC--------------------Cc---------Ccee
Confidence 45678999999999999999988876532 25677766422110 00 0135
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec-ccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhcccccc
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA-RWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSLSYL 297 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s-~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~~~l 297 (655)
+.|.|.||++||++ ||.|.|.+ .||++.++..|.+.|.++|+++.|++|||+||+||||.+.+++
T Consensus 57 ~~L~v~~p~~YP~~-~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~ 122 (128)
T 2ebm_A 57 TTLKFTYSEKYPDE-APLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIV 122 (128)
T ss_dssp EEEEEECCSSTTTS-CCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCC-CceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHH
Confidence 99999999999995 99999987 6999999999999999999999999999999999999998764
No 3
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.81 E-value=6e-20 Score=170.27 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=90.9
Q ss_pred hhchHHHHHHHHHHHHHhcCCCeeeeccCCC-----CceEEEEEeeccCCCceEEeecCCCCccccCCCCCCCccccccc
Q 006225 152 LRINDQSQGDELLALESIYGDSVFILDRQRD-----LRSCQIHVHVETLDGLTVTAKLNSSTDLDARSESSDDFSYSFKV 226 (655)
Q Consensus 152 ~~~n~e~Q~~EleaLeSIY~d~~~~~~~~~~-----~~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (655)
|.++.|+|++||+||+|||+|++..++.... ...|+|+|.. .... ..+
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~------------~~~~--------~~~------- 60 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYP------------QGLA--------GEE------- 60 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECC------------TTSC--------SSS-------
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEec------------CCcC--------Ccc-------
Confidence 3578899999999999999999877654221 2355555531 1000 000
Q ss_pred ccCCcEEEEEEcCCCCCCCCCCeEEe-ecccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhccccc
Q 006225 227 QYLPPIVLTCLLPKSYPSHLPPYFTI-SARWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSLSY 296 (655)
Q Consensus 227 ~~LPpi~L~~~lP~~YPs~~pP~~~l-~s~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~~~ 296 (655)
..+.|.|.|.||++||++ ||.|.| ++.||++.++..|.+.|.++|+++.|++|||+||+||||.+..+
T Consensus 61 -~~~~~~L~v~~p~~YP~~-~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 129 (137)
T 1ukx_A 61 -VYVQVELRVKCPPTYPDV-VPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEH 129 (137)
T ss_dssp -CSCEEEEEECCCTTTTSS-CCCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEEECCCCCCCC-CCcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 123499999999999986 888888 77899999999999999999999999999999999999999765
No 4
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9.2e-20 Score=167.09 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHhcCC--CeeeeccCCC-CceEEEEEeeccCCCceEEeecCCCCccccCCCCCCCcccccccccCCc
Q 006225 155 NDQSQGDELLALESIYGD--SVFILDRQRD-LRSCQIHVHVETLDGLTVTAKLNSSTDLDARSESSDDFSYSFKVQYLPP 231 (655)
Q Consensus 155 n~e~Q~~EleaLeSIY~d--~~~~~~~~~~-~~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~LPp 231 (655)
..|+|.+||+||+|||++ ++..++.... ...|+|+|...... +. -++
T Consensus 8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~---------------------~~---------~~~ 57 (128)
T 2ebk_A 8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM---------------------DA---------DIP 57 (128)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT---------------------TC---------CCE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC---------------------CC---------CeE
Confidence 457899999999999987 7776543211 35777776422110 00 024
Q ss_pred EEEEEEcCCCCCCCCCCeEEeecccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhcccccc
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISARWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSLSYL 297 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~~~l 297 (655)
+.|.|.||++||++ ||.|.|.+.||++.++..|.+.|.++|+++.|++|||+|++|||+++..++
T Consensus 58 ~~L~~~~p~~YP~~-~P~i~l~~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~ 122 (128)
T 2ebk_A 58 LELVFHLPVNYPSC-LPGISINSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHIL 122 (128)
T ss_dssp EEEEEEECSSTTSS-CCCCCCCCSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHH
T ss_pred EEEEEECCCCCCCC-CCeEEEEhhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence 89999999999998 999999999999999999999999999999999999999999999998765
No 5
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.80 E-value=2.9e-19 Score=163.68 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHhcCCCeeeeccCC--CCceEEEEEeeccCCCceEEeecCCCCccccCCCCCCCcccccccccCCc
Q 006225 154 INDQSQGDELLALESIYGDSVFILDRQR--DLRSCQIHVHVETLDGLTVTAKLNSSTDLDARSESSDDFSYSFKVQYLPP 231 (655)
Q Consensus 154 ~n~e~Q~~EleaLeSIY~d~~~~~~~~~--~~~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~LPp 231 (655)
++.++|++||+||+|||+|++..+.... ....|+|.|..... . +.+ .++++
T Consensus 8 e~~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~------------~-------~~~--------~~~~~ 60 (128)
T 2day_A 8 EEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATA------------E-------DQD--------SQYVC 60 (128)
T ss_dssp CCCCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCC------------S-------SSS--------CCCCE
T ss_pred chHHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCC------------C-------Ccc--------cccee
Confidence 3557899999999999999988775421 23456655531110 0 000 13456
Q ss_pred EEEEEEcCCCCCCCCCCeEEe-ecccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhcccc
Q 006225 232 IVLTCLLPKSYPSHLPPYFTI-SARWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSLS 295 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l-~s~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~~ 295 (655)
+.|.|.||++||++ +|.+.+ ++.||++.++..|.+.|.++|+++.|++|||+|++||||.+.+
T Consensus 61 ~~L~~~~p~~YP~~-~P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~ 124 (128)
T 2day_A 61 FTLVLQVPAEYPHE-VPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSG 124 (128)
T ss_dssp EEEEEEECSSTTSS-CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCCCC-CCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 99999999999998 665555 5579999999999999999999999999999999999998865
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.78 E-value=6.4e-19 Score=166.27 Aligned_cols=116 Identities=20% Similarity=0.345 Sum_probs=92.1
Q ss_pred hhchHHHHHHHHHHHHHhcC--CCeeeeccC--------------CCC---ceEEEEEeeccCCCceEEeecCCCCcccc
Q 006225 152 LRINDQSQGDELLALESIYG--DSVFILDRQ--------------RDL---RSCQIHVHVETLDGLTVTAKLNSSTDLDA 212 (655)
Q Consensus 152 ~~~n~e~Q~~EleaLeSIY~--d~~~~~~~~--------------~~~---~~f~i~i~~~~~~~~~i~~~~~~~~~~~~ 212 (655)
+.++.|+|.+||+||+|||+ |++..++.. ..+ ..|+|++.++...+
T Consensus 6 ~~~~~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~~--------------- 70 (152)
T 2dax_A 6 SGEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSDE--------------- 70 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECSTT---------------
T ss_pred ccchHHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCCc---------------
Confidence 45778999999999999999 777765421 001 25666554321110
Q ss_pred CCCCCCCcccccccccCCcEEEEEEcCCCCCCCCCCeEEeecccCCHHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHhh
Q 006225 213 RSESSDDFSYSFKVQYLPPIVLTCLLPKSYPSHLPPYFTISARWLNSTKISNLCSMLESIWI-DQPGQEILYQWIEWLQN 291 (655)
Q Consensus 213 ~~~~~~~~~~~~~v~~LPpi~L~~~lP~~YPs~~pP~~~l~s~wL~~~~l~~L~~~L~~~~e-e~~G~~~lf~~ie~lqe 291 (655)
.+++|.|.|.||++||++ ||.|.|++.||++.++..|++.|.+.|+ ++.|++|||+||+||||
T Consensus 71 ---------------~~~~l~L~v~lP~~YP~~-~P~i~l~~~~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe 134 (152)
T 2dax_A 71 ---------------KMAMFSLACILPFKYPAV-LPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVRE 134 (152)
T ss_dssp ---------------CEEEEEEEEEECSSTTSS-CCCCEEECTTSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHH
T ss_pred ---------------cCceEEEEEECCCCCCCC-CCeEEEEcccCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 124599999999999998 9999999999999999999999998885 58999999999999999
Q ss_pred ccccccc
Q 006225 292 SSLSYLG 298 (655)
Q Consensus 292 ~~~~~l~ 298 (655)
++..++.
T Consensus 135 ~l~~~~~ 141 (152)
T 2dax_A 135 HASGYVS 141 (152)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9998863
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.75 E-value=4.7e-18 Score=160.52 Aligned_cols=113 Identities=25% Similarity=0.219 Sum_probs=88.7
Q ss_pred hhchHHHHHHHHHHHHHhcC--CCeeeeccCC-------------C-C--ceEEEEEeeccCCCceEEeecCCCCccccC
Q 006225 152 LRINDQSQGDELLALESIYG--DSVFILDRQR-------------D-L--RSCQIHVHVETLDGLTVTAKLNSSTDLDAR 213 (655)
Q Consensus 152 ~~~n~e~Q~~EleaLeSIY~--d~~~~~~~~~-------------~-~--~~f~i~i~~~~~~~~~i~~~~~~~~~~~~~ 213 (655)
+.++.|+|.+||+||+|||+ |++...+... . + ..|+|.|.+..+. .
T Consensus 12 ~~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~~-~--------------- 75 (154)
T 2daw_A 12 VKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPK-V--------------- 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTTT-E---------------
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCCC-c---------------
Confidence 45788999999999999998 7776543110 0 1 1333333221100 0
Q ss_pred CCCCCCcccccccccCCcEEEEEEcCCCCCCCCCCeEEeecccCCHHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHhhc
Q 006225 214 SESSDDFSYSFKVQYLPPIVLTCLLPKSYPSHLPPYFTISARWLNSTKISNLCSMLESIWIDQ-PGQEILYQWIEWLQNS 292 (655)
Q Consensus 214 ~~~~~~~~~~~~v~~LPpi~L~~~lP~~YPs~~pP~~~l~s~wL~~~~l~~L~~~L~~~~ee~-~G~~~lf~~ie~lqe~ 292 (655)
.|.|+|+||++||++ ||.|.|.+.||++.+...|++.|.+.++++ .|++|||+||+||||+
T Consensus 76 -----------------~i~L~v~lP~~YP~~-~P~i~l~~~~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~ 137 (154)
T 2daw_A 76 -----------------KIDLQVTMPHSYPYL-ALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDN 137 (154)
T ss_dssp -----------------EEEEEEEECSSTTSS-CCEEEEECSSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHT
T ss_pred -----------------eEEEEEEcCCCCCCC-CCcEEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 288999999999998 999999999999999999999999999887 7999999999999999
Q ss_pred cccccc
Q 006225 293 SLSYLG 298 (655)
Q Consensus 293 ~~~~l~ 298 (655)
+..++.
T Consensus 138 ~~~~l~ 143 (154)
T 2daw_A 138 SASYFL 143 (154)
T ss_dssp THHHHC
T ss_pred HHHHHh
Confidence 988763
No 8
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.53 E-value=4.5e-15 Score=128.27 Aligned_cols=85 Identities=24% Similarity=0.660 Sum_probs=77.3
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCC--CCcccccccCChHHHHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGM--VPPSLLKKLLGDEEFERWES 423 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~--l~~~~i~~ll~~e~~ery~~ 423 (655)
+.++|+||+++++...++.+ +|+|.||++||.+|+..+|.+|.+..++||.++|+.. ++++.++.+++++++++|.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~ 83 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKK 83 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHHH
Confidence 45799999999987777776 7999999999999999999988767899999999999 99999999999999999999
Q ss_pred HHHHHHhh
Q 006225 424 LMLQKTLE 431 (655)
Q Consensus 424 ~~~~~~l~ 431 (655)
++++.++.
T Consensus 84 ~~~~~~v~ 91 (94)
T 1wim_A 84 LQFERSGP 91 (94)
T ss_dssp HHHHSSCS
T ss_pred HHHHhhhc
Confidence 99887764
No 9
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=2.9e-15 Score=117.79 Aligned_cols=55 Identities=25% Similarity=0.596 Sum_probs=46.4
Q ss_pred cccccCccCCccCccccccCCcceEEccc--ccccccccccccccccccccC-CCCCccCC
Q 006225 596 MFDEHGLSCPNCRQFNAKVGNNNHMFCWA--CQIHYCYLCKKIVRRSTQHYG-PKGCKQHT 653 (655)
Q Consensus 596 ~~~~~~k~CP~C~~~ieK~~GCnhm~C~~--C~~~FC~~C~~~~~~~~~Hf~-~~~C~~~~ 653 (655)
|+..++++||+|+++|||++|||||+|.+ |+++|||+|+++|.. |-. -+.|..+.
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~---~~~~~y~C~~y~ 58 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP---HGSAWYNCNRYN 58 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG---GGTSSSSSCSCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc---CCCccccCCCcc
Confidence 56788999999999999999999999988 999999999999984 322 13576654
No 10
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.7e-12 Score=101.98 Aligned_cols=53 Identities=34% Similarity=0.864 Sum_probs=44.1
Q ss_pred HhcccccCccccceeEEecCcCceeccc--cCeeeeccccccccCCCCCC-CCCCCCC
Q 006225 517 ILRDAKQCPSCKMAISRTEGCNKIVCNN--CGQYFCYRCNKAIDGYDHFR-TGTCELF 571 (655)
Q Consensus 517 i~~~~k~CP~C~~~iek~~Gcn~m~C~~--C~~~FC~~C~~~~~~~~H~~-~~~C~~~ 571 (655)
|..++|.||+|+++|+|++|||||+|.. |+++|||.|+.+|.. |.. -..|..|
T Consensus 2 i~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~--~~~~~y~C~~y 57 (60)
T 1wd2_A 2 IAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP--HGSAWYNCNRY 57 (60)
T ss_dssp CCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG--GGTSSSSSCSC
T ss_pred ccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc--CCCccccCCCc
Confidence 4567999999999999999999999998 999999999999943 211 1257766
No 11
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=3.2e-10 Score=103.23 Aligned_cols=97 Identities=23% Similarity=0.510 Sum_probs=69.9
Q ss_pred cccccccccccccC-----CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccCChHHHHHH
Q 006225 347 SFHECRICFSEFAG-----TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLLGDEEFERW 421 (655)
Q Consensus 347 ~~~~C~IC~e~~~~-----~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~ery 421 (655)
+.++|+||++.+.. ...+.++|||.||.+|+.+|+.. ...||. |+..+....+..+.-
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~i------- 68 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIYI------- 68 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECBC-------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCcccccccccc-------
Confidence 45789999998752 22366799999999999999753 248998 999998877665421
Q ss_pred HHHHHHHHhhcCCCcccccCCCCCcccc--cccccccccccceeeccccccc
Q 006225 422 ESLMLQKTLESMSDVAYCPRCETPCIED--EEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 422 ~~~~~~~~l~~~~~~~~CP~C~~~~~~~--~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
..+...||.|...+... .........|||.||..|...|
T Consensus 69 -----------~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 109 (133)
T 4ap4_A 69 -----------GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 109 (133)
T ss_dssp -----------SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHH
T ss_pred -----------CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHH
Confidence 23566799998776432 1222344579999999996644
No 12
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.81 E-value=9.4e-11 Score=99.32 Aligned_cols=69 Identities=19% Similarity=0.444 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccccCCCCCccccc-ccccccccccceeeccccccc---cCCcCCCchHHH
Q 006225 415 DEEFERWESLMLQKTLESMSDVAYCPRCETPCIEDE-EQHAQCSKCFYSFCTLCRERR---HVGVVCMTPEIK 483 (655)
Q Consensus 415 ~e~~ery~~~~~~~~l~~~~~~~~CP~C~~~~~~~~-~~~~~C~~C~~~fC~~C~~~~---H~~~sC~~~~~~ 483 (655)
++++++|.+++.+.+|..+++++|||+|+..++.+. ...+.|+.|++.||+.|+.+| |.+++|.+++.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 456778888888889988999999999999876543 456899999999999999999 999999876443
No 13
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-09 Score=90.81 Aligned_cols=66 Identities=24% Similarity=0.696 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcccccC--CCCCcccc-cccccccc-----cccceeeccccccccCCcCCCc
Q 006225 412 LLGDEEFERWESLMLQKTLESMSDVAYCPR--CETPCIED-EEQHAQCS-----KCFYSFCTLCRERRHVGVVCMT 479 (655)
Q Consensus 412 ll~~e~~ery~~~~~~~~l~~~~~~~~CP~--C~~~~~~~-~~~~~~C~-----~C~~~fC~~C~~~~H~~~sC~~ 479 (655)
+|++++++||++++++.++..+. .+|||+ |+.++..+ ....+.|+ .|++.||+.|+..||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 57788899999999999998775 999997 99988654 34678998 9999999999999999 99975
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.4e-07 Score=76.38 Aligned_cols=60 Identities=27% Similarity=0.638 Sum_probs=47.3
Q ss_pred cccccccccccccCCC--eEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccC
Q 006225 347 SFHECRICFSEFAGTD--FVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLL 413 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~--~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll 413 (655)
+.++|+||++.+...+ ++.++|||.||..|+.+|+... .....||. |+..+....+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTSE
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHHH
Confidence 4578999999987533 6778999999999999998754 12579998 99988776665543
No 15
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.26 E-value=9.4e-07 Score=84.17 Aligned_cols=52 Identities=29% Similarity=0.586 Sum_probs=41.9
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+.+.|+||++.+. +++.++|||.||..|+.+++... ...||. |+..+....+
T Consensus 17 ~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~ 68 (170)
T 3hcs_A 17 SKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQL 68 (170)
T ss_dssp GGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGC
T ss_pred CCCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhhh
Confidence 4478999999874 56778999999999999998753 138997 9988877543
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=9.9e-07 Score=73.48 Aligned_cols=58 Identities=22% Similarity=0.535 Sum_probs=46.2
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLK 410 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~ 410 (655)
+.+.|+||++.+. +.+.++|+|.||..|+..|+......+. ...||. |+..+....+.
T Consensus 18 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 18 EEVTCPICLELLT--QPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSSSCC
T ss_pred CCCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHHhcC
Confidence 4579999999874 4566799999999999999988664432 589998 99988765543
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=7.5e-07 Score=72.26 Aligned_cols=54 Identities=26% Similarity=0.592 Sum_probs=43.0
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+.+.|+||++.+. +.+.++|+|.||..|+..|+.. ......||. |+..+....+
T Consensus 19 ~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCC
T ss_pred cCCEeccCCcccC--CeEEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccC
Confidence 4579999999875 5677899999999999999651 123578998 9998877654
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.20 E-value=1.7e-06 Score=72.03 Aligned_cols=58 Identities=28% Similarity=0.541 Sum_probs=45.3
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLK 410 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~ 410 (655)
+.+.|+||++.+. +.+.++|+|.||..|+..|+......+ ....||. |+..+....+.
T Consensus 18 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 18 EEVTCPICLELLK--EPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp TTTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTTCCE
T ss_pred cCCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHHhCC
Confidence 4478999999874 456789999999999999988754222 3589998 99988766544
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.8e-06 Score=70.01 Aligned_cols=55 Identities=24% Similarity=0.501 Sum_probs=44.0
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccC
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLL 413 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll 413 (655)
+.+.|+||++.+. +.+.+ +|+|.||..|+..|+.. ...||. |+..+....+...+
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 14 PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGP 69 (72)
T ss_dssp GGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCC
T ss_pred CCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccC
Confidence 4478999999875 45665 99999999999999864 368998 99998877665544
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.16 E-value=2.2e-06 Score=70.51 Aligned_cols=65 Identities=17% Similarity=0.343 Sum_probs=48.5
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccc-ccCChHHHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLK-KLLGDEEFERWE 422 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~-~ll~~e~~ery~ 422 (655)
+.+.|+||++.+. +++.++|||.||+.|+..|+.. + ...||. |+..+....+. ...-...++.|.
T Consensus 7 ~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 7 EYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred ccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 4579999999874 6777899999999999999852 2 468998 99988765443 333345555554
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.16 E-value=1.7e-06 Score=75.05 Aligned_cols=66 Identities=21% Similarity=0.568 Sum_probs=49.6
Q ss_pred cccccccccccccCCCeEe-cCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccC-ChHHHHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVR-LPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLL-GDEEFERWES 423 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~-l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll-~~e~~ery~~ 423 (655)
+.+.|+||++.+. +++. ++|||.||..|+..|+... ...||. |+..+....+.... -.++.+.+.+
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 4578999999984 5777 7999999999999998753 268998 99999877665543 2344444443
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.14 E-value=2.6e-06 Score=75.01 Aligned_cols=72 Identities=25% Similarity=0.477 Sum_probs=52.5
Q ss_pred ccccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc-CChHHHHHHHHH
Q 006225 346 KSFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL-LGDEEFERWESL 424 (655)
Q Consensus 346 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l-l~~e~~ery~~~ 424 (655)
.+.+.|+||++.+. +.+.++|||.||..|+..|+... .....||. |+..+....+... .-..+++.+.+.
T Consensus 19 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 19 QKILECPICLELIK--EPVSTKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHTSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred cCCCCCcccChhhc--CeEECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 34579999999874 55667999999999999998743 12478998 9999887766543 334566666655
Q ss_pred HH
Q 006225 425 ML 426 (655)
Q Consensus 425 ~~ 426 (655)
+.
T Consensus 90 ~~ 91 (112)
T 1jm7_A 90 IC 91 (112)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=1.4e-06 Score=69.20 Aligned_cols=57 Identities=23% Similarity=0.546 Sum_probs=43.3
Q ss_pred ccccccccc-cccCCC--eEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccC
Q 006225 348 FHECRICFS-EFAGTD--FVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLL 413 (655)
Q Consensus 348 ~~~C~IC~e-~~~~~~--~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll 413 (655)
..+|+||++ .+.... ++.++|||.||..|+.+++.. + ...||. |+..+....+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccccceeec
Confidence 368999999 554322 245799999999999999763 1 468998 99999887776554
No 24
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.12 E-value=3.8e-07 Score=75.19 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=44.5
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLK 410 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~ 410 (655)
+.++|+||++.+. +.+.++|||.||..|+..|+......+ .....||. |+..+....+.
T Consensus 11 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~~-~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 11 EEVTCPICLELLT--EPLSLDCGHSLCRACITVSNKEAVTSM-GGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCEETTTTEECS--SCCCCSSSCCCCHHHHSCCCCCCSSSC-CCCCCCSS--SCCCCCSSGGG
T ss_pred cCCCCcCCCcccC--CeeECCCCCHHHHHHHHHHHHhcccCC-CCCCcCCC--CCCcCCHhhCC
Confidence 4578999999975 456679999999999999876543222 23689998 99988765443
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.12 E-value=2.3e-06 Score=65.31 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=38.5
Q ss_pred ccccccccccccC--CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 348 FHECRICFSEFAG--TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 348 ~~~C~IC~e~~~~--~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
..+|+||++.+.. .....++|+|.||..|+.+|+... ..||. |+..++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 4689999999853 346667999999999999998753 57998 887664
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.12 E-value=2.3e-06 Score=72.80 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=39.3
Q ss_pred cccccccccccccCCCeEecC-CCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCC
Q 006225 347 SFHECRICFSEFAGTDFVRLP-CHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMV 404 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~-C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l 404 (655)
+.+.|+||++.+. +++.++ |||.||..|+..|+... + ...||. |+..+
T Consensus 12 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp TTTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred cCCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 4579999999875 667788 99999999999998632 1 378998 99886
No 27
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.11 E-value=9.1e-07 Score=74.68 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=42.3
Q ss_pred cccccCccccceeEEecCcCceeccccCeeeeccccccccCCCCCCCCCCCCC
Q 006225 519 RDAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAIDGYDHFRTGTCELF 571 (655)
Q Consensus 519 ~~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~~~~~H~~~~~C~~~ 571 (655)
.+.++||+|..++....+...++|+.|++.||+.|+.+|. ..|.+.+|..|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~--~~H~~~sC~~~ 73 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE--EQHRGRSCEDF 73 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC--TTTTTSCHHHH
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCchh--hcCCCCChHHH
Confidence 3578899999999888787889999999999999999982 12566789765
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.5e-06 Score=69.15 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=41.3
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+.+.|+||++.+. +.+.++|||.||..|+..|+. . ....||. |+..+..+.+
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~----~---~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLS----S---SSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHT----T---SSCCCTT--TCCCCCTTTC
T ss_pred cCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHH----h---CcCCCCC--CCcCCChhhc
Confidence 4578999999875 455579999999999999975 1 2468998 9998876554
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.11 E-value=1.9e-06 Score=67.76 Aligned_cols=55 Identities=24% Similarity=0.643 Sum_probs=43.5
Q ss_pred ccccccccccccC-----CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc
Q 006225 348 FHECRICFSEFAG-----TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL 412 (655)
Q Consensus 348 ~~~C~IC~e~~~~-----~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l 412 (655)
..+|+||++.+.. ...+.++|||.||..|+.+|+.. ...||. |+..+....+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 4689999998753 22356799999999999999874 248998 9999988776654
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.10 E-value=1.9e-06 Score=69.35 Aligned_cols=56 Identities=23% Similarity=0.609 Sum_probs=43.8
Q ss_pred cccccccccccccC-----CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc
Q 006225 347 SFHECRICFSEFAG-----TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL 412 (655)
Q Consensus 347 ~~~~C~IC~e~~~~-----~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l 412 (655)
+..+|+||++.+.. ...+.++|+|.||..|+.+|+... ..||. |+..+....+..+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheeec
Confidence 34789999998743 223667999999999999998642 48998 9999887776654
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.07 E-value=1.6e-06 Score=71.82 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=40.6
Q ss_pred cccccccccccccCCCeEec--CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRL--PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l--~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+..+|+||++.+...+...+ +|||.||..|+.+++.. ....||. |+..+....+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 45789999998864444433 49999999999988642 2478998 9998876544
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=3.6e-06 Score=66.24 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=35.3
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCC
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPD 397 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~ 397 (655)
+.+.|+||++.+. +.+.++|||.||..|+.+|+... + ....||.
T Consensus 19 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~ 62 (63)
T 2ysj_A 19 EEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS---C--GFFKCPL 62 (63)
T ss_dssp CCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHHC---S--SCCCCSC
T ss_pred cCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHcC---C--CCCcCcC
Confidence 4578999999875 56778999999999999998741 1 2468986
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.00 E-value=5e-06 Score=71.75 Aligned_cols=66 Identities=30% Similarity=0.610 Sum_probs=47.2
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccc-cCChHHHHHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKK-LLGDEEFERWESL 424 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~-ll~~e~~ery~~~ 424 (655)
+.+.|+||++.+. +.+.+ +|||.||..|+..|+.. ...||. |+..+....+.. ..-.+++++|.+.
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHHH
Confidence 3478999999985 56666 89999999999999762 258997 999888654432 2233445555443
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.99 E-value=5.1e-06 Score=74.79 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=40.3
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
.+.|+||++.+. +++.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 52 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred CCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 478999999885 6777899999999999999871 2468998 9998876
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=9.3e-06 Score=69.57 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=45.6
Q ss_pred cccccccccccccCCCeEecC-CCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCC-CCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLP-CHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGM-VPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~-C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~-l~~~~i 409 (655)
..+.|+||++.+. +++.++ |||.||+.|+..|+...-.. .....||..+|... +....+
T Consensus 6 ~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~--~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 6 SGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKR--KKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTT--TCCBCCCSTTCCCCCBCGGGE
T ss_pred cEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCc--CCCCCCCcCcCcccccCHhhC
Confidence 4578999999874 788884 99999999999999764211 12578999999977 665443
No 36
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=8.5e-06 Score=65.25 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=40.0
Q ss_pred cccccccccccccC-CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcc
Q 006225 347 SFHECRICFSEFAG-TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 347 ~~~~C~IC~e~~~~-~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~ 407 (655)
....|+||++.+.. .....++|+|.||..|+..|+... ..||. |+..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccCc
Confidence 34689999998864 455668999999999999998752 35998 98877653
No 37
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=6.8e-06 Score=68.12 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=39.5
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
..+.|+||++.+. +.+.++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ--NPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCcCCCchhc--CeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 4578999999984 5677899999999999999863 357998 999886
No 38
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.94 E-value=6.3e-06 Score=67.22 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=38.8
Q ss_pred cccccccccccccCCCeEecC-CCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCC
Q 006225 347 SFHECRICFSEFAGTDFVRLP-CHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMV 404 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~-C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l 404 (655)
+.+.|+||++.+. +.+.++ |+|.||..|+..|+... + ...||. |+..+
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 62 (74)
T ss_dssp GGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCSS
T ss_pred CCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCcC
Confidence 3478999999875 567787 99999999999998752 1 468998 98864
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=2e-06 Score=69.55 Aligned_cols=53 Identities=32% Similarity=0.763 Sum_probs=41.9
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKK 411 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ 411 (655)
+...|+||++.+. +.+.++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 14 ~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 14 TVPECAICLQTCV--HPVSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SCCBCSSSSSBCS--SEEEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSC
T ss_pred CCCCCccCCcccC--CCEEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccC
Confidence 3468999999874 5677799999999999998642 258998 999888765544
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=5.1e-06 Score=66.30 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=38.8
Q ss_pred cccccccccccccC-----CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAG-----TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~-----~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
....|+||++.+.. ..++.++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccCc
Confidence 45789999998753 12366799999999999999874 247998 9887653
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.86 E-value=6.7e-06 Score=67.58 Aligned_cols=55 Identities=27% Similarity=0.587 Sum_probs=42.8
Q ss_pred cccccccccccccCC-CeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccc
Q 006225 347 SFHECRICFSEFAGT-DFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKK 411 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~-~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ 411 (655)
...+|+||++.+... ....++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCcccCC
Confidence 447899999998654 3455799999999999999752 247998 999887765543
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=74.67 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=41.1
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcc
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~ 407 (655)
.+.|+||++.+. +++.++|+|.||..|+..|+.. ....||. |+..+...
T Consensus 78 ~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhhc--CCEEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 378999999874 6777899999999999999873 2468998 99988775
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.82 E-value=9.6e-06 Score=71.15 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=40.1
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcc
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~ 407 (655)
+.+.|+||++.+. +.+.+ +|||.||..|+..|+.. ...||. |+..+...
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCSS
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHh--------CCcCcC--CCcccccc
Confidence 4578999999884 56776 99999999999999753 268998 99887753
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.80 E-value=9e-06 Score=74.69 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=39.5
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~ 407 (655)
+.++|+||++.+. +++.++|||.||..|+..|+.. ...||. |+..+...
T Consensus 52 ~~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS--SEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCCCE
T ss_pred ccCCCcccCcccC--CceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCCCC
Confidence 3468999999874 6778899999999999998642 357998 99887643
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.79 E-value=3.3e-05 Score=64.80 Aligned_cols=51 Identities=22% Similarity=0.079 Sum_probs=42.1
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+.+.|+||++.+ .+++.++|||.||+.|+..|+.. ...||. |+..+....+
T Consensus 13 ~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGC
T ss_pred hheECcccCchh--cCCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHhc
Confidence 458999999987 47888999999999999999873 257998 8888876543
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.6e-05 Score=64.52 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=39.1
Q ss_pred cccccccccccccCCC-eEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTD-FVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~-~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
....|+||++.+.... ...++|+|.||..|+..|+... ..||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCccccc
Confidence 3468999999986543 4456999999999999998642 37998 9887654
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.78 E-value=1.1e-05 Score=61.41 Aligned_cols=49 Identities=31% Similarity=0.621 Sum_probs=37.6
Q ss_pred cccccccccccccCC-CeEecC-CCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 347 SFHECRICFSEFAGT-DFVRLP-CHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~-~~~~l~-C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
+..+|+||++.+... ....++ |+|.||..|+.+|+.. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 346899999998653 355665 9999999999999642 347998 887664
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.77 E-value=3.1e-05 Score=68.76 Aligned_cols=54 Identities=31% Similarity=0.621 Sum_probs=43.8
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL 412 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l 412 (655)
.+.|+||++.+. +++.++|||.||..|+..|+... ...||. |+..+....+...
T Consensus 23 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILA--DPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhcccc
Confidence 478999999874 66778999999999999998752 357998 9999887766543
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=62.08 Aligned_cols=44 Identities=23% Similarity=0.622 Sum_probs=33.8
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCC
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPD 397 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~ 397 (655)
+...|+||++.+. +.+.++|+|.||..|+.+|+... .....||.
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 57 (58)
T 2ecj_A 14 VEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL-----ERDFPCPV 57 (58)
T ss_dssp CCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS-----CCSCCCSC
T ss_pred cCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc-----CCCCCCCC
Confidence 4578999999985 45667999999999999996531 12467886
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.76 E-value=4.7e-06 Score=76.98 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=40.0
Q ss_pred ccccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcc
Q 006225 346 KSFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 346 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~ 407 (655)
.+.+.|+||++.+. +.+.++|||.||..|+..|+.. + ...||. |+..+...
T Consensus 29 ~~~~~C~IC~~~~~--~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLR--RPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTTCCC
T ss_pred CcCcCCCCCChhhc--CcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCccccc
Confidence 45589999999874 5677899999999999998742 2 368997 88766544
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=1.4e-05 Score=65.13 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=39.6
Q ss_pred cccccccccccccCCC-eEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTD-FVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~-~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+..+|.||++.+...+ ...++|+|.||..|+..|+... ..||. |+..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 4468999999987544 3457999999999999998642 37998 9887765
No 52
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.75 E-value=1.2e-05 Score=66.80 Aligned_cols=45 Identities=29% Similarity=0.787 Sum_probs=39.0
Q ss_pred ccccCc--cccceeEEecCcCceecc-----ccCeeeeccccccccCCCCCCCCCCCC
Q 006225 520 DAKQCP--SCKMAISRTEGCNKIVCN-----NCGQYFCYRCNKAIDGYDHFRTGTCEL 570 (655)
Q Consensus 520 ~~k~CP--~C~~~iek~~Gcn~m~C~-----~C~~~FC~~C~~~~~~~~H~~~~~C~~ 570 (655)
+.++|| +|+.+|....+...++|+ .||+.||+.|+..| |. .+|..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w-----H~-~~C~~ 75 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY-----HE-GECSA 75 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC-----CS-SCSSS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc-----cC-Ccccc
Confidence 489999 599999988888999997 79999999999999 44 67864
No 53
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.71 E-value=3e-05 Score=69.16 Aligned_cols=52 Identities=29% Similarity=0.586 Sum_probs=41.7
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
+.+.|+||++.+. +.+.++|||.||..|+..|+... ...||. |+..+....+
T Consensus 17 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~ 68 (118)
T 3hct_A 17 SKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQL 68 (118)
T ss_dssp GGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGC
T ss_pred CCCCCCcCChhhc--CeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHhc
Confidence 3478999999874 56778999999999999998753 138998 9988876543
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.70 E-value=8.5e-06 Score=72.65 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=45.8
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccc-cCChHHHHHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKK-LLGDEEFERWESL 424 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~-ll~~e~~ery~~~ 424 (655)
+.+.|+||++.+. +++.+ +|||.||..|+..|+. ..||. |+..+....+.. ..-..+++.|..+
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccccccccHHHHHHHHHHHHH
Confidence 4589999999874 56777 9999999999999864 57998 999886544332 2223444555443
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=3.7e-06 Score=67.60 Aligned_cols=49 Identities=35% Similarity=0.739 Sum_probs=38.7
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
+...|+||++.+.. +.++|+|.||..|+..|+. ....||. |+..+....
T Consensus 14 ~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD---LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTCCC
T ss_pred CCCCCeeCCcCccC---cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccCCC
Confidence 34789999999864 6679999999999999864 1467997 887776543
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.67 E-value=8.8e-06 Score=62.64 Aligned_cols=45 Identities=36% Similarity=0.742 Sum_probs=36.2
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+.+.|+||++.+. +.+.++|+|.||..|+.. ....||. |+..+..
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSC
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeec
Confidence 4478999999885 456789999999999876 2578998 9887654
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.67 E-value=2.2e-05 Score=66.73 Aligned_cols=50 Identities=40% Similarity=0.867 Sum_probs=39.6
Q ss_pred cccccccccccccCCC-eEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTD-FVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~-~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
....|+||++.+...+ ...++|+|.||..|+..|+.. .-.||. |+..++.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 4568999999986544 455799999999999999752 237998 9988765
No 58
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.63 E-value=3.9e-05 Score=61.09 Aligned_cols=47 Identities=30% Similarity=0.767 Sum_probs=37.6
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
...|+||++.+.. ....++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQ--------NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHH--------SCSTTT--TCCCCC
T ss_pred CCCCeeCCccccC-CcEecCCCCeeHHHHHHHHHhC--------cCcCcC--CChhhH
Confidence 4689999999752 3466799999999999999853 247998 998776
No 59
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.59 E-value=4.7e-05 Score=67.21 Aligned_cols=53 Identities=25% Similarity=0.494 Sum_probs=38.5
Q ss_pred cccccccccccCCC---------------eE-ecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 349 HECRICFSEFAGTD---------------FV-RLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 349 ~~C~IC~e~~~~~~---------------~~-~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
.+|+||++.+.... .+ .++|+|.||..||..|+...-. .....||. |+..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCTT--TCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCCC--CCCccCC
Confidence 58999999985321 22 4689999999999999854221 12578998 9987653
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.55 E-value=6.4e-05 Score=64.88 Aligned_cols=50 Identities=14% Similarity=-0.101 Sum_probs=41.5
Q ss_pred cccccccccccccCCCeEecCCC-CcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCH-HFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~-H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
+.+.|+||++.+ .+++.++|| |.||+.|+..|+.. ...||. |+..+....
T Consensus 21 ~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred HhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 458999999987 488889999 99999999999863 247998 888887653
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.54 E-value=1.6e-05 Score=70.48 Aligned_cols=48 Identities=31% Similarity=0.755 Sum_probs=38.9
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
.+.|+||++.+. +.+.++|||.||..|+..|+.. + ...||. |+..+..
T Consensus 15 ~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV--EPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS--SCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCccCCcccC--ceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 368999999874 6777899999999999988642 1 378998 9998764
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.52 E-value=4e-05 Score=66.39 Aligned_cols=50 Identities=18% Similarity=0.027 Sum_probs=41.4
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
+.+.|+||++.+ .+++.++|||.||+.|+..|+.. ...||. |+..+....
T Consensus 28 ~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTTS
T ss_pred HhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChhh
Confidence 458999999987 47888899999999999999752 257998 888887643
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.48 E-value=3.4e-05 Score=77.53 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=44.5
Q ss_pred cccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
..+.|+||++.+ .++++. .|||.||+.|+..|+.. + ....||..+|+..+....+
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~----~--~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG----Y--TTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT----C--SCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh----C--CCCCCCcccccCcCchhhC
Confidence 347899999988 477774 99999999999999763 1 2478999999998876554
No 64
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=7e-05 Score=62.14 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=35.7
Q ss_pred ccccccccccc-----------CCC-eEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 349 HECRICFSEFA-----------GTD-FVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 349 ~~C~IC~e~~~-----------~~~-~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
.+|+||++.+. ..+ .+.+ .|+|.||..|+.+|+... -.||. |+..+....+
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~~ 79 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQRI 79 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEEEE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchhhc
Confidence 35666666653 333 4444 699999999999997532 37998 9988776543
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.39 E-value=0.0001 Score=69.59 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=38.9
Q ss_pred ccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 348 FHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
.+.|+||++.+. +.+.+ +|||.||..|+..|+.. + ...||. |+..+..
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCCS
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCCC
Confidence 468999999985 45665 99999999999999862 1 467998 9988753
No 66
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.36 E-value=6.2e-05 Score=61.35 Aligned_cols=44 Identities=27% Similarity=0.686 Sum_probs=36.0
Q ss_pred cccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+...|.||++.+. +.+.++|||. ||..|+..+ ..||. |+..+..
T Consensus 23 ~~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCSE
T ss_pred cCCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCccC
Confidence 4468999999864 5677799999 999998865 57998 9988764
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.19 E-value=0.00024 Score=72.43 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=41.5
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
..+.|+||++.+ .++++++|||.||+.|+..|+... + ..||. |+..+....
T Consensus 207 ~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~----~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C----SSCTT--TCCCCCGGG
T ss_pred cccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C----CCCcC--CCCCCchhc
Confidence 468999999987 488889999999999999998641 1 23998 999887644
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00036 Score=57.79 Aligned_cols=53 Identities=25% Similarity=0.477 Sum_probs=41.7
Q ss_pred ccccccccccccCCCeEecCCC-----CcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 348 FHECRICFSEFAGTDFVRLPCH-----HFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~-----H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
...|.||++++...+...++|. |.|+.+||.+|+... + ...||. |+..+....
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeeecCc
Confidence 3689999998875555567885 999999999998764 1 368998 998876543
No 69
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00014 Score=59.26 Aligned_cols=44 Identities=27% Similarity=0.682 Sum_probs=34.9
Q ss_pred cccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+..+|.||++.+. +++.++|||. ||..|+.. ...||. |+..+..
T Consensus 24 ~~~~C~IC~~~~~--~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC--CBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCcCCCCCC--CEEEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 3468999999864 5666799999 99999953 257998 9988765
No 70
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.08 E-value=0.00046 Score=65.93 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=42.3
Q ss_pred ccccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccc
Q 006225 346 KSFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSL 408 (655)
Q Consensus 346 ~~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~ 408 (655)
...+.|+||++.+. +++.++|||.||+.|+..|+... | . .||. |+..+....
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~Ghtfer~~I~~~l~~~---~---~-tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQRV---G---H-FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT---C---S-BCTT--TCCBCCGGG
T ss_pred cHhhcccCccccCC--CCeECCCCCEECHHHHHHHHHhC---C---C-CCCC--CcCCCChhh
Confidence 45689999999874 78889999999999999998752 2 1 6998 888887653
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.05 E-value=0.00028 Score=63.47 Aligned_cols=57 Identities=23% Similarity=0.601 Sum_probs=44.2
Q ss_pred ccccccccccccccC-----CCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc
Q 006225 346 KSFHECRICFSEFAG-----TDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL 412 (655)
Q Consensus 346 ~~~~~C~IC~e~~~~-----~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l 412 (655)
.....|+||++.+.. ...+.++|+|.||..|+..|+.. ...||. |+..+..+.+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhcceee
Confidence 345789999998752 12356799999999999999864 248998 9999988776553
No 72
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.98 E-value=0.00052 Score=73.17 Aligned_cols=52 Identities=25% Similarity=0.629 Sum_probs=41.4
Q ss_pred cccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLL 409 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i 409 (655)
...+|+||++.+. +++.++|||.||..|+..|+.. ....||. |+..+....+
T Consensus 331 ~~~~C~ICle~~~--~pv~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDK--DVKIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBC--CEEEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEEE
T ss_pred CCCCCCccCcCCC--CeEEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCcee
Confidence 3479999999873 5677899999999999998763 1358998 9998876543
No 73
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.92 E-value=0.0006 Score=59.59 Aligned_cols=50 Identities=20% Similarity=0.445 Sum_probs=37.8
Q ss_pred cccccccccccccCC----------------CeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGT----------------DFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~----------------~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+..+|.||++.+... ....++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCccee
Confidence 346899999987633 1344699999999999999753 357998 9887654
No 74
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.88 E-value=0.00049 Score=54.13 Aligned_cols=48 Identities=17% Similarity=0.517 Sum_probs=35.3
Q ss_pred ccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
...|.||++......++.++|||. ||..|...+... .-.||. |+..+.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 468999999864322223499998 999999987642 147998 998875
No 75
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.85 E-value=0.00029 Score=58.13 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=35.6
Q ss_pred cccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+...|.||++... +.+.++|||. ||..|+..+ ..||. |+..+..
T Consensus 17 ~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 3468999999864 5667799999 999999854 28998 9988765
No 76
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.85 E-value=0.00053 Score=54.12 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=35.4
Q ss_pred ccccccccccccCCCeEec--CCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 348 FHECRICFSEFAGTDFVRL--PCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l--~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
..+|.||++... +.+.+ +|||. ||.+|+..+... .-.||. |+..+.
T Consensus 8 ~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred cCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 358999999864 33444 99999 899999988642 247998 998875
No 77
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.00061 Score=54.50 Aligned_cols=44 Identities=34% Similarity=0.793 Sum_probs=35.4
Q ss_pred cccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 347 SFHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+...|.||++... +.+.++|+|. ||..|+.. .-.||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred CCCCCCCcCcCCC--CEEEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 4578999999863 5677899999 99999983 147998 9987765
No 78
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.86 E-value=0.0014 Score=58.24 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=0.0
Q ss_pred cccccccccccC--------------CCeE--ecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 349 HECRICFSEFAG--------------TDFV--RLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 349 ~~C~IC~e~~~~--------------~~~~--~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
-.|.||++.+.. .+.. .++|+|.||..|+..|+.. .-.||. |+..+..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 112 (117)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeee
Confidence 589999999853 1112 2489999999999999864 246997 8876543
No 79
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.83 E-value=0.0025 Score=67.29 Aligned_cols=45 Identities=27% Similarity=0.835 Sum_probs=36.8
Q ss_pred ccccccccccccccCCCeEecCCCCc-ccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 346 KSFHECRICFSEFAGTDFVRLPCHHF-FCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 346 ~~~~~C~IC~e~~~~~~~~~l~C~H~-fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
.+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+..
T Consensus 293 ~~~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCCE
T ss_pred cCCCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCccC
Confidence 34579999999874 6777899999 999999864 57998 9988764
No 80
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.71 E-value=0.086 Score=54.83 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=41.3
Q ss_pred ccccccccccccCCC-eE-----ecCCCCcccHhhHHHHHHHHhhcCCc---ceeccCCCCCCCCCCcc
Q 006225 348 FHECRICFSEFAGTD-FV-----RLPCHHFFCWKCMKTYLDIHISEGTV---SKLQCPDAKCGGMVPPS 407 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~-~~-----~l~C~H~fC~~Cl~~yi~~~i~~g~~---~~i~CP~~~C~~~l~~~ 407 (655)
..+|+|||+.+.... .. ...|+|.|...||.+|+...-..... ..=.||. |+..++..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 468999999876422 21 23699999999999999876533221 2347997 99987754
No 81
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.26 E-value=0.012 Score=47.84 Aligned_cols=53 Identities=21% Similarity=0.556 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 344 FLKSFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 344 f~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
|.....+|.||++.+... ... .|+|.|...|+.+|+... ..-.||. |+..+..
T Consensus 11 y~~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~------~~~~CP~--Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTC------SSCCCTT--TCSCCCS
T ss_pred ccCCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhc------CCCCCCC--CcCcCCC
Confidence 344557899999998642 233 899999999999998632 1257998 8887653
No 82
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.47 E-value=0.035 Score=43.15 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=40.6
Q ss_pred cccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCccccccc
Q 006225 349 HECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKL 412 (655)
Q Consensus 349 ~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~l 412 (655)
+.|+|+++.+. +.+.+ .+||.|++.|+.+|+... + +||. .+..+...++..+
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGGGCEEC
T ss_pred EEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChhhcEEC
Confidence 68999999874 67777 899999999999999742 2 3998 6677776655443
No 83
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.63 E-value=0.029 Score=52.78 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCCcccccCCCCCcccccccccccccccceeecccccccc
Q 006225 433 MSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH 472 (655)
Q Consensus 433 ~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 472 (655)
..+...||.|...+... +.+ .|||.||..|...|-
T Consensus 15 ~~~~~~C~IC~~~~~~p----v~~-~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 15 LESKYECPICLMALREA----VQT-PCGHRFCKACIIKSI 49 (170)
T ss_dssp CCGGGBCTTTCSBCSSE----EEC-TTSCEEEHHHHHHHH
T ss_pred CCCCCCCCCCChhhcCc----EEC-CCCCHHHHHHHHHHH
Confidence 34556899998876432 334 699999999988653
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=92.27 E-value=0.072 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=28.2
Q ss_pred cCCccCccccccCCcceEEccccc--ccccccccccccccccccC
Q 006225 603 SCPNCRQFNAKVGNNNHMFCWACQ--IHYCYLCKKIVRRSTQHYG 645 (655)
Q Consensus 603 ~CP~C~~~ieK~~GCnhm~C~~C~--~~FC~~C~~~~~~~~~Hf~ 645 (655)
.||.|++.+++ |..|| ..||-.|++-+++..-.|.
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiSkkrv~f~ 69 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLISKKRVNFV 69 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCCTTSSEEE
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEeecceEEEE
Confidence 69999999987 66677 7899999999887654444
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=90.62 E-value=0.21 Score=42.45 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=32.0
Q ss_pred cccccccccccCCCeEe-cCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCc
Q 006225 349 HECRICFSEFAGTDFVR-LPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPP 406 (655)
Q Consensus 349 ~~C~IC~e~~~~~~~~~-l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~ 406 (655)
+.|.+|--.+. -..+ ++|.|.||.+|...+.... .=.||. |+..+..
T Consensus 2 hfC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~-------~k~Cp~--C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKG-------DKMCPG--CSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTT-------CCBCTT--TCCBCSE
T ss_pred eecCccCCCeE--EEeeeccccccHHHHHHHHHHhcc-------CCCCcC--cCCeeee
Confidence 45888854442 2333 4999999999999886532 235887 8877654
No 86
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.31 E-value=0.039 Score=46.54 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=30.9
Q ss_pred CcccccCCCCCcccccccccccccccceeecccccccc---------CCcCCCchHHHH
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH---------VGVVCMTPEIKL 484 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H---------~~~sC~~~~~~~ 484 (655)
+...||.|...+.... .+.-..|+|.||..|+..+. .++.|+..+|+.
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ--MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp SBCCCSSSCCCCBGGG--EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CCcCCcccCccccccc--ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 4567999987653322 22223589999999997432 246798766653
No 87
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.29 E-value=0.3 Score=37.66 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=35.1
Q ss_pred cccccccccccccCCCeEecCC--CC---cccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 347 SFHECRICFSEFAGTDFVRLPC--HH---FFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C--~H---~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
+...|.||+++.. ... .++| .+ .|...||.+|+... + ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~---~---~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NER-FRACGCTGELENVHRSCLSTWLTIS---R---NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CCC-CCSCCCSSGGGSCCHHHHHHHHHHH---T---CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC-Cce-ecCcCCCCchhhhHHHHHHHHHHhC---C---CCccCC--CCCeee
Confidence 3468999998743 333 4565 45 89999999999753 2 368998 887764
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.73 E-value=0.51 Score=38.14 Aligned_cols=48 Identities=29% Similarity=0.704 Sum_probs=38.9
Q ss_pred cccccccccccccCCCeEecC--CCCcccHhhHHHHHHHHhhcCCcceeccCC
Q 006225 347 SFHECRICFSEFAGTDFVRLP--CHHFFCWKCMKTYLDIHISEGTVSKLQCPD 397 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~--C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~ 397 (655)
....|.+|-+.+....|+..+ =.|.||..|-+.+++.+-..+ .+.||.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCC
Confidence 457899999999888888763 489999999999999875543 577885
No 89
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.06 E-value=0.25 Score=41.92 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=24.6
Q ss_pred ccccccccccccCCCeEe-cCCCCcccHhhHHHH
Q 006225 348 FHECRICFSEFAGTDFVR-LPCHHFFCWKCMKTY 380 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~-l~C~H~fC~~Cl~~y 380 (655)
...|.||.+.+....... +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 368999997643323333 799999999999983
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=87.76 E-value=0.1 Score=44.44 Aligned_cols=52 Identities=21% Similarity=0.561 Sum_probs=36.2
Q ss_pred ccCccccceeEEecCcCceeccccCeeeeccccccccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhccccccC
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAIDGYDHFRTGTCELFPQEMIRDWEERLNARQVVAQIQADMFDEHG 601 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~~~~~H~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (655)
..|+.|..+|.--+. -.-|++.||+.|-..|. ....
T Consensus 2 hfC~~C~~Pi~iygR-----mIPCkHvFCydCa~~~~---------------------------------------~~~~ 37 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGR-----MIPCKHVFCYDCAILHE---------------------------------------KKGD 37 (101)
T ss_dssp CBCTTTCSBCSEEEE-----EETTCCEEEHHHHHHHH---------------------------------------HTTC
T ss_pred eecCccCCCeEEEee-----eccccccHHHHHHHHHH---------------------------------------hccC
Confidence 469999999854322 22488999999976541 0124
Q ss_pred ccCCccCccccccCCc
Q 006225 602 LSCPNCRQFNAKVGNN 617 (655)
Q Consensus 602 k~CP~C~~~ieK~~GC 617 (655)
+.||.|+..|.+.+-+
T Consensus 38 k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 38 KMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CBCTTTCCBCSEEEEE
T ss_pred CCCcCcCCeeeeeEEe
Confidence 7899999998877654
No 91
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=87.26 E-value=0.26 Score=40.12 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=30.8
Q ss_pred CCcccccCCCCCcccccccccccccccceeecccccccc--CCcCCCc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH--VGVVCMT 479 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H--~~~sC~~ 479 (655)
.+...||.|..++...+.....| .|||.||..|...+- ....|+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~ 55 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPA 55 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTT
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCC
Confidence 45668999999775433334445 699999999987542 3456764
No 92
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.13 E-value=0.21 Score=39.20 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=25.4
Q ss_pred CCcccccCCCCCcccc--cccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIED--EEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~--~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
.+...||.|...+... ......-..|||.||..|...|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 47 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 47 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHH
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHH
Confidence 3456799998776432 1223344579999999997644
No 93
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=86.03 E-value=0.55 Score=34.73 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=24.7
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
+...||.|...+.... ....-+.|+|.||..|...|
T Consensus 4 ~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 4 DGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp CSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHHT
T ss_pred CCCcCccCCccccCCC-ceEECCCCCCcccHHHHHHH
Confidence 4457999987764432 22334469999999998765
No 94
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.73 E-value=0.36 Score=35.87 Aligned_cols=31 Identities=26% Similarity=0.623 Sum_probs=21.9
Q ss_pred cccccCccccceeEEecCcCceeccccCeee
Q 006225 519 RDAKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 519 ~~~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
...+.||.|+..+.-...-+...|++||+.+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3468899999854443334778999998764
No 95
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=85.39 E-value=0.83 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.593 Sum_probs=26.5
Q ss_pred ccccCccccceeEEecCcCceeccccCeeee
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFC 550 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC 550 (655)
....||.|+....+..+-..+.|..|++.|-
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 3567999999988888888999999998884
No 96
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.25 E-value=0.58 Score=37.45 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=23.1
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....||.|...+........ ..|+|.||..|...|
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~--~~C~H~fc~~Ci~~~ 48 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQ--LPCNHLFHDSCIVPW 48 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEE--CTTSCEEETTTTHHH
T ss_pred CCCCCeeCCccccCCCCEEE--eCCCCeecHHHHHHH
Confidence 44579999877644322111 248999999997654
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=85.20 E-value=0.93 Score=40.79 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=23.1
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+. +.++-+ |||.||..|...|
T Consensus 53 ~~~C~iC~~~~~-----~~~~~~-CgH~fc~~Ci~~~ 83 (138)
T 4ayc_A 53 ELQCIICSEYFI-----EAVTLN-CAHSFCSYCINEW 83 (138)
T ss_dssp HSBCTTTCSBCS-----SEEEET-TSCEEEHHHHHHH
T ss_pred cCCCcccCcccC-----CceECC-CCCCccHHHHHHH
Confidence 346999987663 234444 9999999998877
No 98
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.72 E-value=0.24 Score=38.50 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=24.8
Q ss_pred CCcccccCCCCCcccc--cccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIED--EEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~--~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
.+...||.|...+... ....+.-..|+|.||..|...|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 52 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHH
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHH
Confidence 3556799998876432 1222233478999999987644
No 99
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.16 E-value=0.41 Score=47.59 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhhccc---ccccc-ccceecC---CCCccccCCcccccccCCCC
Q 006225 254 ARWLNSTKISNLCSMLESIWIDQPGQEILYQWIEWLQNSSL---SYLGF-NEEIVLG---PYGVACIGDRRAISESVSPD 326 (655)
Q Consensus 254 s~wL~~~~l~~L~~~L~~~~ee~~G~~~lf~~ie~lqe~~~---~~l~~-~~~~~l~---~~~~~~~~d~~~~~~~~s~~ 326 (655)
+.-++..++.-++..|+.+.+...|.. +-++.|.-... .-+.. ..+.+|. ..+|.... .|.++
T Consensus 90 aT~yt~~Ei~~fk~lle~i~~s~~~~~---s~~~~lnl~~~~~~k~l~~~eae~lL~~lv~~gWl~~~-----~g~~~-- 159 (238)
T 3nw0_A 90 ATDFAENELDLFRKALELIIDSETGFA---SSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEK-----EGEFT-- 159 (238)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHSSSSCE---EHHHHHGGGTTCSSSCCCHHHHHHHHHHHHHTTSEEEE-----TTEEE--
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCCce---eHHHHHHHHhhcccCCCCHHHHHHHHHHHHHhcchhhh-----CCEEE--
Confidence 467899999999999999998765643 22233321110 00100 0011111 11121111 11111
Q ss_pred CCchhhhccchhhhhhhccccccccccccccccCCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 327 VDIPSIRSYNHERCHENFLKSFHECRICFSEFAGTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 327 ~~~~~l~~~n~~~~~~~f~~~~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
..+..+.+...- -...|......|.||.+-... .... .|+|.|...|+..|+.. .....||. |+..++
T Consensus 160 l~~R~l~El~~~-l~~~~~~~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~ 228 (238)
T 3nw0_A 160 LHGRAILEMEQY-IRETYPDAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWP 228 (238)
T ss_dssp ECHHHHHHHHHH-HHHHCTTTCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCC
T ss_pred ecCccHHHHHHH-HHHhcCCCCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCC
Confidence 111222111110 112333456789999998763 2444 59999999999999753 12468996 998877
Q ss_pred cc
Q 006225 406 PS 407 (655)
Q Consensus 406 ~~ 407 (655)
.+
T Consensus 229 ~~ 230 (238)
T 3nw0_A 229 HE 230 (238)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 100
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=83.86 E-value=4.4 Score=36.47 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 73 f~l~i~fp~~YP~~-PP~v~F~T 94 (136)
T 2a7l_A 73 FQLLFKFSSRYPFD-SPQVMFTG 94 (136)
T ss_dssp EEEEEEECTTTTTS-CCEEEEES
T ss_pred EEEEEECCCCCCCC-CCEEEEeC
Confidence 78999999999997 99876543
No 101
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.66 E-value=0.6 Score=38.20 Aligned_cols=36 Identities=22% Similarity=0.672 Sum_probs=30.8
Q ss_pred ccCCccCccccccCCcceEEccccc-----ccccccccccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQ-----IHYCYLCKKIVRR 639 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~-----~~FC~~C~~~~~~ 639 (655)
..||.|++.++..++ +..|..|+ ..||-.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHH
Confidence 579999999999877 66799998 4589999999864
No 102
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.25 E-value=0.38 Score=38.34 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=23.6
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+.... .+....|++.||+.|...|
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w 56 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKW 56 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEETTTEEEETTHHHHH
T ss_pred CCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHH
Confidence 456999987664422 2333359999999998776
No 103
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=82.98 E-value=0.45 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.681 Sum_probs=23.2
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+. +.++-+.|||.||+.|...|
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 46 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 46 (74)
T ss_dssp GGSCSSSCCCCT-----TCEECSSSCCEECTTHHHHH
T ss_pred CCCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHH
Confidence 457999976653 23444349999999998776
No 104
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.32 E-value=0.37 Score=37.20 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=20.4
Q ss_pred ccccCCCC-Ccccccccccccccccceeecccccc
Q 006225 437 AYCPRCET-PCIEDEEQHAQCSKCFYSFCTLCRER 470 (655)
Q Consensus 437 ~~CP~C~~-~~~~~~~~~~~C~~C~~~fC~~C~~~ 470 (655)
..||.|.. .+.......+. ..|||.||..|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~-~~CgH~fC~~Ci~~ 37 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMV-NVCGHTLCESCVDL 37 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEE-CTTCCCEEHHHHHH
T ss_pred CcCCcCCCCccCCCccCeec-CCCCCHhHHHHHHH
Confidence 46999987 44332211111 36899999998653
No 105
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.99 E-value=0.57 Score=37.07 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=22.9
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....||.|...+..... .... .|+|.||..|...|
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~-~C~H~f~~~Ci~~~ 48 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDE-LGIC-PCKHAFHRKCLIKW 48 (74)
T ss_dssp CSCBCSSSCCBCCSSSC-EEEE-TTTEEEEHHHHHHH
T ss_pred CCCCCcCCCcccCCCCc-EEEc-CCCCEecHHHHHHH
Confidence 44579999887643322 1222 48999999986643
No 106
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.00 E-value=0.83 Score=36.48 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=23.2
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
++...||.|...+... .. ..|||.||..|...|
T Consensus 6 ~~~~~C~IC~~~~~~P---v~--~~CgH~fc~~Ci~~~ 38 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VI--VSTGQTYERSSIQKW 38 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EE--ETTTEEEEHHHHHHH
T ss_pred cccCCCCCccccccCC---EE--cCCCCeecHHHHHHH
Confidence 4567899998866431 11 259999999997654
No 107
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.98 E-value=1.6 Score=35.11 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=22.6
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
.+...||.|...+... .. ..|+|.||..|...|
T Consensus 17 ~~~~~C~IC~~~~~~p---~~--~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LS--LDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BC--CSSSCCBCTTHHHHH
T ss_pred cCCCCCCCCCcccCCc---ee--CCCCCHHHHHHHHHH
Confidence 3456899998765321 11 158999999997643
No 108
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=80.78 E-value=18 Score=34.53 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 97 f~l~i~fp~~YP~~-PP~V~F~T 118 (194)
T 3bzh_A 97 FFLDITFTPEYPFK-PPKVTFRT 118 (194)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCcCCCC-CccccccC
Confidence 78999999999997 99876543
No 109
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=80.49 E-value=6.8 Score=34.53 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.+.||++||.. ||.+....
T Consensus 55 f~~~i~fp~~YP~~-PP~v~f~t 76 (125)
T 2fo3_A 55 YKLKIIFPDDYPLK-PPIVYFLQ 76 (125)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEEcCCCCCCC-CCEEEEeC
Confidence 78999999999997 99886544
No 110
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.46 E-value=0.88 Score=39.00 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=22.6
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+.. .++- .|||.||..|...|
T Consensus 21 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 51 (112)
T 1jm7_A 21 ILECPICLELIKE-----PVST-KCDHIFCKFCMLKL 51 (112)
T ss_dssp HTSCSSSCCCCSS-----CCBC-TTSCCCCSHHHHHH
T ss_pred CCCCcccChhhcC-----eEEC-CCCCHHHHHHHHHH
Confidence 3579999876632 2333 49999999998876
No 111
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.97 E-value=0.9 Score=33.46 Aligned_cols=29 Identities=31% Similarity=0.759 Sum_probs=22.6
Q ss_pred cccCccccc-eeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKM-AISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~-~iek~~Gcn~m~C~~C~~~F 549 (655)
...||.|+. .+..+..-..+.|..||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 467999998 78777766778888787654
No 112
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=79.39 E-value=0.12 Score=43.35 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....||.|...+..... ..-..|+|.||..|...|
T Consensus 39 ~~~~C~IC~~~~~~~~~--~~~l~C~H~Fh~~Ci~~w 73 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV--ATELPCHHYFHKPCVSIW 73 (91)
T ss_dssp SCSEETTTTEECCTTCE--EEEETTTEEEEHHHHHHH
T ss_pred CCCCCcccChhhcCCCc--EEecCCCChHHHHHHHHH
Confidence 34579999876543322 222248999999997654
No 113
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.10 E-value=0.61 Score=41.09 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=22.9
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+.. .++- .|||.||..|...|
T Consensus 52 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 82 (124)
T 3fl2_A 52 TFQCICCQELVFR-----PITT-VCQHNVCKDCLDRS 82 (124)
T ss_dssp HTBCTTTSSBCSS-----EEEC-TTSCEEEHHHHHHH
T ss_pred CCCCCcCChHHcC-----cEEe-eCCCcccHHHHHHH
Confidence 3579999876642 2444 49999999998776
No 114
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=79.09 E-value=0.61 Score=35.35 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=22.1
Q ss_pred cccccCccccceeEEecCcCceeccccCeee
Q 006225 519 RDAKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 519 ~~~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
...+.||.|+..+.-...-+...|.+|++.+
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 3468899999855433344688899998764
No 115
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=79.07 E-value=18 Score=33.46 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 68 f~l~i~fp~~YP~~-PP~v~F~T 89 (165)
T 2c4o_A 68 FFLTIHFPTDYPFK-PPKVAFTT 89 (165)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEECCCcCCCC-CCEEEEec
Confidence 78999999999997 99876543
No 116
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=79.03 E-value=8.3 Score=35.45 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 62 f~~~i~fp~~YP~~-PP~v~f~t 83 (158)
T 1zdn_A 62 FRMKLLLGKDFPAS-PPKGYFLT 83 (158)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEEcCCCCCCC-CCEEEecc
Confidence 78999999999997 99886654
No 117
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.79 E-value=1.3 Score=32.58 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=22.9
Q ss_pred cCccCCccCc-cccccCCcceEEcccccccc
Q 006225 600 HGLSCPNCRQ-FNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 600 ~~k~CP~C~~-~ieK~~GCnhm~C~~C~~~F 629 (655)
+...||.|+. .+.....-..+.|..||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4578999997 66666666779998888654
No 118
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.56 E-value=0.81 Score=35.97 Aligned_cols=31 Identities=26% Similarity=0.695 Sum_probs=22.9
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+.. .+.-+ |||.||+.|...|
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~-CgH~fC~~Ci~~~ 45 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLP-CKHVFCYLCVKGA 45 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEET-TTEEEEHHHHHHC
T ss_pred CCCCccCCcccCC-----CEEcc-CCCHHHHHHHHHH
Confidence 4579999866532 24444 9999999999886
No 119
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=78.41 E-value=23 Score=32.80 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 70 f~l~i~fp~~YP~~-PP~V~F~T 91 (166)
T 2ayv_A 70 FFLNIHFPSDYPFK-PPKVNFTT 91 (166)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEeCCCcCCCC-Cceeeecc
Confidence 78999999999997 99776543
No 120
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=78.15 E-value=11 Score=33.60 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 69 f~~~i~fp~~YP~~-PP~v~f~t 90 (136)
T 2h2y_A 69 YKIKIIFPDNYPLK-PPIVYFLQ 90 (136)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEEeCCCCCCC-CCEEEEeC
Confidence 78999999999997 99886543
No 121
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=77.33 E-value=25 Score=31.87 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-pP~v~f~t 74 (151)
T 4gpr_A 53 FFLDVHFPVDYPFK-APRVTFMT 74 (151)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-cceeEEec
Confidence 78999999999987 99876543
No 122
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=75.38 E-value=12 Score=34.15 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 54 f~~~i~fp~~YP~~-PP~v~f~t 75 (154)
T 2c2v_B 54 FKLELFLPEEYPMA-APKVRFMT 75 (154)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEEcCCCCCCC-CCEEEeec
Confidence 78999999999997 99886644
No 123
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=75.35 E-value=0.84 Score=38.68 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=27.0
Q ss_pred ccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
..||-|...+. +-++|..||+.||+.|...|..
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHH
Confidence 57999998774 3567778999999999998864
No 124
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.15 E-value=1.1 Score=34.10 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCcccccCCCCCcccccccccccccccceeecccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH 472 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 472 (655)
.+...||.|...+.. +... .|||.||..|...|-
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~--~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTI--DCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEEC--TTSSEECHHHHHHHH
T ss_pred ccCCCCCcCCchhCC---eEEe--CCCCcchHHHHHHHH
Confidence 455689999876542 2222 689999999998664
No 125
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=75.13 E-value=17 Score=33.10 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (152)
T 2aak_A 53 FKLSLQFSEDYPNK-PPTVRFVS 74 (152)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCEEEEec
Confidence 78999999999997 99876543
No 126
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.55 E-value=1.7 Score=36.52 Aligned_cols=36 Identities=25% Similarity=0.661 Sum_probs=31.1
Q ss_pred ccCCccCccccccCCcceEEccccc-----ccccccccccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQ-----IHYCYLCKKIVRR 639 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~-----~~FC~~C~~~~~~ 639 (655)
..||.|++.++..+| +.+|..|+ ..||--|++++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 689999999998887 77899998 4579999999875
No 127
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=74.06 E-value=22 Score=32.23 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (150)
T 1z2u_A 53 FFLTIHFPTDYPFK-PPKVAFTT 74 (150)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CcEEEEec
Confidence 78999999999997 99876543
No 128
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=73.74 E-value=16 Score=33.33 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 58 f~~~i~fp~~YP~~-PP~v~f~t 79 (156)
T 2e2c_A 58 YKLTLEFPSDYPYK-PPVVKFTT 79 (156)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCEEEEeC
Confidence 78999999999997 99876543
No 129
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=73.71 E-value=14 Score=34.40 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (169)
T 1yh2_A 53 FKLEVIIPERYPFE-PPQIRFLT 74 (169)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEEeCCCCCCC-CcEEEeec
Confidence 78999999999997 99886543
No 130
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.40 E-value=1.4 Score=34.43 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=28.1
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccccC----CcCCCc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV----GVVCMT 479 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~----~~sC~~ 479 (655)
.+...||.|...+.. .... .|||.||..|...|-. ...|+.
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTI--DCGHNFCLKCITQIGETSCGFFKCPL 62 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEEC--TTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred ccCCEeccCCcccCC---eEEc--CCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 455689999876542 1122 6899999999987753 346764
No 131
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=73.10 E-value=13 Score=33.80 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 51 f~~~i~fp~~YP~~-PP~v~f~t 72 (149)
T 1fxt_A 51 FVVDIEVPMEYPFK-PPKMQFDT 72 (149)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCEEEEeC
Confidence 78999999999997 99876644
No 132
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=72.66 E-value=1.6 Score=37.74 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=22.4
Q ss_pred ccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
-.||-|...+.. -++- .|||.||..|...|
T Consensus 16 ~~C~iC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTL-PCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSS-----CEEC-TTSCEECHHHHCCC
T ss_pred CCCccCCcccCc-----eeEc-CCCCHHhHHHHHHH
Confidence 469999866532 2333 49999999999887
No 133
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=72.53 E-value=17 Score=33.56 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 63 f~~~i~fp~~YP~~-pP~v~f~t 84 (167)
T 3fn1_B 63 FQFETEVPDAYNMV-PPKVKCLT 84 (167)
T ss_dssp EEEEEECCTTBTTB-CCEEEECS
T ss_pred EEEEEECCCCCCCC-CCeeEecC
Confidence 78999999999997 99876543
No 134
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.52 E-value=1.6 Score=32.36 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
.+...||.|...+... . . ..|+|.||..|...|
T Consensus 13 ~~~~~C~IC~~~~~~p---~-~-~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---V-I-IECGHNFCKACITRW 45 (58)
T ss_dssp CCCCBCSSSCCBCSSC---C-C-CSSCCCCCHHHHHHH
T ss_pred ccCCCCccCCcccCcc---E-e-CCCCCccCHHHHHHH
Confidence 3556899998765432 1 1 268999999999877
No 135
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=72.46 E-value=17 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (164)
T 3h8k_A 53 FPAILSFPLDYPLS-PPKMRFTC 74 (164)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEECCCCCCCC-CCEEEEcC
Confidence 77999999999998 99886544
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.10 E-value=1.5 Score=35.72 Aligned_cols=37 Identities=24% Similarity=0.531 Sum_probs=24.6
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
.+...||.|...+.......+. ..|||.||..|...|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~ 49 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKL 49 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHH
T ss_pred cCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHH
Confidence 3556799998876543321222 268999999997744
No 137
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=71.64 E-value=2.3 Score=33.62 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=25.1
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYR 552 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~ 552 (655)
+.-.||.|+..++.......+.|+.||..|=..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 356799999999888777778888777666333
No 138
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=71.04 E-value=12 Score=34.06 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 50 f~~~i~fp~~YP~~-PP~v~f~t 71 (149)
T 2r0j_A 50 YKLELFLPEQYPME-PPKVRFLT 71 (149)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEeCCcccCCC-CCeeEecc
Confidence 78999999999997 99876544
No 139
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=70.56 E-value=17 Score=33.24 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 60 f~~~i~fp~~YP~~-PP~v~f~t 81 (159)
T 2bep_A 60 YQLEIKIPETYPFN-PPKVRFIT 81 (159)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEeCCCcCCCC-CCEEEeeC
Confidence 78999999999997 99886644
No 140
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=70.47 E-value=18 Score=34.00 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 57 f~~~i~fp~~YP~~-PP~v~f~t 78 (183)
T 3rz3_A 57 FKARLKFPIDYPYS-PPAFRFLT 78 (183)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCeeEecC
Confidence 77999999999997 99876543
No 141
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.39 E-value=1.4 Score=33.93 Aligned_cols=41 Identities=20% Similarity=0.441 Sum_probs=28.4
Q ss_pred CCcccccCCCCCcccccccccccccccceeecccccccc--CCcCCCc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH--VGVVCMT 479 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H--~~~sC~~ 479 (655)
.+...||.|...+... .. ..|||.||..|...|- ....|+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~--~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQ--TECGHRFCESCMAALLSSSSPKCTA 55 (66)
T ss_dssp CCCEECTTTCCEESSC---CC--CSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred CcCCCCCCCChHhcCe---eE--CCCCCHHHHHHHHHHHHhCcCCCCC
Confidence 4556799998765321 11 3789999999999875 3456764
No 142
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=69.99 E-value=17 Score=35.30 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 72 f~l~i~fP~~YP~~-PP~V~F~T 93 (216)
T 2pwq_A 72 FTLAITIPNDYPYN-PPKIKFVT 93 (216)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCcCCCC-CCcccccC
Confidence 78999999999997 99876544
No 143
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=69.98 E-value=12 Score=34.81 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~l~i~fp~~YP~~-PP~v~F~t 74 (169)
T 1ayz_A 53 FRLLLEFDEEYPNK-PPHVKFLS 74 (169)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECcccCCCC-CCcccccc
Confidence 78999999999997 99876543
No 144
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=69.96 E-value=17 Score=33.08 Aligned_cols=22 Identities=27% Similarity=0.621 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (155)
T 1wzv_A 53 FNLRISFPPEYPFK-PPMIKFTT 74 (155)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCcceeeC
Confidence 78999999999997 99886644
No 145
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=69.85 E-value=2.1 Score=39.15 Aligned_cols=31 Identities=23% Similarity=0.611 Sum_probs=21.5
Q ss_pred cccccCCCCCcccccccccccccccceeeccccccc
Q 006225 436 VAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 436 ~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
...||.|...+... .. ..|||.||..|...|
T Consensus 78 ~~~C~IC~~~~~~p---v~--~~CgH~fC~~Ci~~~ 108 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VT--TECFHNVCKDCLQRS 108 (150)
T ss_dssp HTBCTTTSSBCSSE---EE--CTTSCEEEHHHHHHH
T ss_pred CCEeecCChhhcCC---EE--cCCCCchhHHHHHHH
Confidence 35799998765422 11 368999999997643
No 146
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=69.73 E-value=2.3 Score=33.62 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=24.7
Q ss_pred CccCCccCccccccCCcceEEcccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~F 629 (655)
...||.|+...+-......+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46899999998888888899998888766
No 147
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=69.06 E-value=11 Score=34.40 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 54 f~~~i~fp~~YP~~-PP~v~f~t 75 (155)
T 1jat_A 54 FELELYLPDDYPME-APKVRFLT 75 (155)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEEcCCCCCCC-CCcceeec
Confidence 78999999999997 99876543
No 148
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=69.02 E-value=18 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 72 f~l~i~fp~~YP~~-PP~V~F~T 93 (169)
T 1yrv_A 72 FQLTIHFTSEYNYA-PPVVKFIT 93 (169)
T ss_dssp EEEEEECCTTBTTB-CCEEEESS
T ss_pred EEEEEECCccCCCC-CCcceecC
Confidence 78999999999997 99876544
No 149
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.96 E-value=1.9 Score=33.65 Aligned_cols=35 Identities=23% Similarity=0.655 Sum_probs=28.2
Q ss_pred CCcccccCCCCCcccccccccccccc-cceeeccccccccCC
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKC-FYSFCTLCRERRHVG 474 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C-~~~fC~~C~~~~H~~ 474 (655)
....||-.|+. +..++|..| +-.||..|+++.|..
T Consensus 6 ee~pWC~ICne------DAtlrC~gCdgDLYC~rC~rE~H~~ 41 (67)
T 2d8v_A 6 SGLPWCCICNE------DATLRCAGCDGDLYCARCFREGHDN 41 (67)
T ss_dssp CCCSSCTTTCS------CCCEEETTTTSEEECSSHHHHHTTT
T ss_pred cCCCeeEEeCC------CCeEEecCCCCceehHHHHHHHccc
Confidence 45678888864 356899999 889999999999953
No 150
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=68.37 E-value=1.4 Score=38.46 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=23.6
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...||-|...+.. .++.+ ||+.||..|...|
T Consensus 18 ~~~C~IC~~~~~~-----p~~~~-CgH~fC~~Ci~~~ 48 (118)
T 3hct_A 18 KYECPICLMALRE-----AVQTP-CGHRFCKACIIKS 48 (118)
T ss_dssp GGBCTTTCSBCSS-----EEECT-TSCEEEHHHHHHH
T ss_pred CCCCCcCChhhcC-----eEECC-cCChhhHHHHHHH
Confidence 3579999877642 24554 9999999999887
No 151
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=66.45 E-value=2.2 Score=38.42 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=23.6
Q ss_pred hcccccCccccceeEEec----CcCceeccccCeee
Q 006225 518 LRDAKQCPSCKMAISRTE----GCNKIVCNNCGQYF 549 (655)
Q Consensus 518 ~~~~k~CP~C~~~iek~~----Gcn~m~C~~C~~~F 549 (655)
+...++||.|+.++.... +...+.|..|++.+
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 456899999998875432 45678899898755
No 152
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=66.29 E-value=29 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 67 f~~~i~fp~~YP~~-PP~v~F~T 88 (172)
T 2awf_A 67 FKAHLTFPKDYPLR-PPKMKFIT 88 (172)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEECCcccCCC-CCcccccC
Confidence 78999999999997 99886544
No 153
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=66.19 E-value=1.8 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=26.2
Q ss_pred CccCCccCccccccCCcceEEccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYC 630 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC 630 (655)
...||.|+....+..+-..+.|..|+..|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 478999999888888888999999998874
No 154
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=66.06 E-value=17 Score=34.24 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 79 f~l~i~fp~~YP~~-PP~V~F~T 100 (179)
T 1i7k_A 79 YKLSLEFPSGYPYN-APTVKFLT 100 (179)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCcCCCC-CceEEEec
Confidence 78999999999997 99876543
No 155
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=65.62 E-value=2.8 Score=37.07 Aligned_cols=32 Identities=19% Similarity=0.577 Sum_probs=26.7
Q ss_pred cCCCcccccCCCCCccccccccccccccccee
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYSF 463 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~f 463 (655)
.+..+-.||.|+..+.......+.||.|+|.+
T Consensus 23 ~M~~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCCSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred ccccCCCCCCCCCcceEecCCeEECCcccccc
Confidence 34466789999998888778889999999986
No 156
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=65.46 E-value=1.3 Score=33.48 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=23.7
Q ss_pred cccccCCCCCcccc--cccccccccccceeeccccccc
Q 006225 436 VAYCPRCETPCIED--EEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 436 ~~~CP~C~~~~~~~--~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
...||.|...+... ......-..|||.||..|...|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 40 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 40 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHH
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHH
Confidence 35799998765432 1222334479999999997654
No 157
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=64.18 E-value=32 Score=31.59 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 54 f~~~i~fp~~YP~~-PP~v~f~t 75 (165)
T 2ucz_A 54 FNAKLEFPKDYPLS-PPKLTFTP 75 (165)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCccCCCC-CCEEEEeC
Confidence 78999999999997 99886654
No 158
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=64.15 E-value=4.1 Score=35.46 Aligned_cols=30 Identities=20% Similarity=0.477 Sum_probs=23.3
Q ss_pred ccccCccccceeEEec----CcCceeccccCeee
Q 006225 520 DAKQCPSCKMAISRTE----GCNKIVCNNCGQYF 549 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~----Gcn~m~C~~C~~~F 549 (655)
..++||.|+.++.... +.+.+.|..|++.+
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 3689999998876532 46679999999876
No 159
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=64.14 E-value=3.1 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEee
Q 006225 232 IVLTCLLPKSYPSHLPPYFTIS 253 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~ 253 (655)
+.|.|.+|.+||.. ||.+.+-
T Consensus 87 FkLefdiP~tYP~t-PPeI~Fp 107 (168)
T 3kpa_A 87 FEMNFDIPVTYPQA-PPEIALP 107 (168)
T ss_dssp EEEEEECCTTTTTS-CCCCBCG
T ss_pred EEEEEeCCccCCCC-CCEeecc
Confidence 78999999999998 9988764
No 160
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=63.95 E-value=3.7 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=20.1
Q ss_pred CccCCccCccccccCCcceEEcccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~F 629 (655)
.+-||+|+..+.-...-+-+.|.+|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 47899999743322234688999999764
No 161
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=63.42 E-value=4.6 Score=32.03 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=24.9
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYR 552 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~ 552 (655)
+.-.||.|+..++....-..+.|+.||..|=..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 356799999999887666678888777666433
No 162
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=62.87 E-value=4.3 Score=32.02 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=24.5
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYR 552 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~ 552 (655)
+.-.||.|+..++...+-..+.|+.||..|=..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 356799999998887666678888777666333
No 163
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=62.18 E-value=20 Score=33.86 Aligned_cols=22 Identities=18% Similarity=0.470 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 63 f~l~i~fP~~YP~~-PP~v~f~T 84 (187)
T 2f4w_A 63 YHGKLIFPREFPFK-PPSIYMIT 84 (187)
T ss_dssp EEEEEECCTTTTSS-CCEEEECS
T ss_pred EEEEEEcCCCCCCC-CCcccccC
Confidence 78999999999997 99886544
No 164
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=62.07 E-value=24 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 71 f~~~i~fp~~YP~~-pP~v~f~t 92 (167)
T 4ds2_A 71 YQLSVLFSDDYPHE-PPTVRFVT 92 (167)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCEEEEeC
Confidence 78999999999997 99876544
No 165
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=61.94 E-value=2.7 Score=33.30 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCCcccccCCCCCcccccccccccccccceeecccccccc
Q 006225 433 MSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRH 472 (655)
Q Consensus 433 ~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 472 (655)
..+...||.|...+.. ... ..|||.||..|...|-
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~--l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLS--LDCGHSLCRACITVSN 43 (79)
T ss_dssp CCCCCEETTTTEECSS---CCC--CSSSCCCCHHHHSCCC
T ss_pred cccCCCCcCCCcccCC---eeE--CCCCCHHHHHHHHHHH
Confidence 3455689999876532 111 2689999999998654
No 166
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=61.93 E-value=2.8 Score=32.38 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=23.1
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....||.|...+..... .....|+|.||..|...|
T Consensus 13 ~~~~C~IC~~~~~~~~~--~~~~~C~H~fc~~Ci~~~ 47 (69)
T 2kiz_A 13 TEEKCTICLSILEEGED--VRRLPCMHLFHQVCVDQW 47 (69)
T ss_dssp CCCSBTTTTBCCCSSSC--EEECTTSCEEEHHHHHHH
T ss_pred CCCCCeeCCccccCCCc--EEEeCCCCHHHHHHHHHH
Confidence 44579999876543222 222358999999997654
No 167
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.90 E-value=3.1 Score=36.10 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccccCCcCCCc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHVGVVCMT 479 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~sC~~ 479 (655)
+...||.|...+... +.-..|||.||..|...|-. ..|+.
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG-TGCPV 60 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT-TBCSS
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc-CCCcC
Confidence 346799998765321 11125899999999998765 55653
No 168
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=61.51 E-value=43 Score=31.62 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCCCCCCeEEee
Q 006225 232 IVLTCLLPKSYPSHLPPYFTIS 253 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~ 253 (655)
+.|.|.||++||.. ||.+...
T Consensus 82 f~~~i~fp~~YP~~-PP~v~f~ 102 (190)
T 3o2u_A 82 INFNLDFNEVYPIE-PPKVVCL 102 (190)
T ss_dssp EEEEEECCTTTTTS-CCEEEEC
T ss_pred EEEEEECCCCCCCC-CceeEEe
Confidence 78999999999998 9987654
No 169
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=61.20 E-value=32 Score=31.95 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 67 f~~~i~fp~~YP~~-PP~v~f~t 88 (172)
T 2y9m_A 67 FRILIEVPSSYPMN-PPKISFMQ 88 (172)
T ss_dssp EEEEEECCTTTTTS-CCEEEECT
T ss_pred EEEEEECCCcCCCC-CCEEEEee
Confidence 78999999999997 99886654
No 170
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.18 E-value=2.6 Score=33.01 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=23.2
Q ss_pred CccCCccCccccccCCcceEEccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVR 638 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~ 638 (655)
...||-|...+.. -++-..|++.||+.|...|.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 15 YILCSICKGYLID-----ATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp GGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHH
T ss_pred CCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHH
Confidence 4689999876643 33434678888888887775
No 171
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=60.82 E-value=23 Score=32.70 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 64 f~l~i~fp~~YP~~-pP~v~F~t 85 (163)
T 3rcz_B 64 YKLTMAFPEEYPTR-PPKCRFTP 85 (163)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCCCCCC-CCEEEEeC
Confidence 77999999999998 99876543
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=60.00 E-value=5 Score=31.77 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=24.2
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYR 552 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~ 552 (655)
+.-.||.|+..+....+-..+.|+.||..|=..
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 356799999998877665678888777666333
No 173
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.69 E-value=27 Score=29.98 Aligned_cols=81 Identities=19% Similarity=0.498 Sum_probs=49.7
Q ss_pred ccccccccccc------cCCCeEec-CCCCcccHhhHH--HHHHHHhhcCCcceeccCCCCCCCCCCcccccccCChHHH
Q 006225 348 FHECRICFSEF------AGTDFVRL-PCHHFFCWKCMK--TYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLLGDEEF 418 (655)
Q Consensus 348 ~~~C~IC~e~~------~~~~~~~l-~C~H~fC~~Cl~--~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~ 418 (655)
...|.+|+..- ..++++.. .|+..|...||. .-+...+..+ .-.||. |+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~--C~----------------- 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIE--CK----------------- 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTT--TC-----------------
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---cccccc--CC-----------------
Confidence 35799998762 22345554 799999999995 2233445544 346776 55
Q ss_pred HHHHHHHHHHHhhcCCCcccccCCCCCcccccccccccccccceeecccccc
Q 006225 419 ERWESLMLQKTLESMSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRER 470 (655)
Q Consensus 419 ery~~~~~~~~l~~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 470 (655)
.|-.|+..- .+....+.|..|...|=..|..+
T Consensus 63 -------------------~C~vC~~~~-~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 63 -------------------TCSSCRDQG-KNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp -------------------CBTTTCCCC-CTTCCCEECTTTCCEECGGGCSS
T ss_pred -------------------ccccccCcC-CCccceEEcCCCCCeeecccCCC
Confidence 455565431 12345677777777777777653
No 174
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.44 E-value=5.9 Score=29.50 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=26.4
Q ss_pred hhhhhhhcccCCC----------CCCChhhHHHHHHHHhh
Q 006225 111 EVKEKQDEEEGLP----------SNSNVNDVESILRELSS 140 (655)
Q Consensus 111 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 140 (655)
|.+|++|-+.||+ .++|++-|+.+|.+...
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4679999999998 89999999999988764
No 175
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=59.30 E-value=4.4 Score=35.76 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=24.0
Q ss_pred ccccCccccceeEEe----cCcCceeccccCeeee
Q 006225 520 DAKQCPSCKMAISRT----EGCNKIVCNNCGQYFC 550 (655)
Q Consensus 520 ~~k~CP~C~~~iek~----~Gcn~m~C~~C~~~FC 550 (655)
..++||.|+.++.-. .+.+.+.|..|++.+=
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 468999999887643 4567799999998764
No 176
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.18 E-value=3.4 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.596 Sum_probs=23.0
Q ss_pred ccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
..||-|...+.. .++- .||+.||..|...|
T Consensus 24 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 53 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVET-SCKHLFCRICILRC 53 (116)
T ss_dssp TBCTTTCSBCSS-----EEEC-TTSCEEEHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEc-CCCCcccHHHHHHH
Confidence 579999877632 3443 49999999999887
No 177
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=59.12 E-value=6.5 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=28.8
Q ss_pred CccCCccCccccccCCcceEEccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVR 638 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~ 638 (655)
.-.|+.|+..=. .+|+-| .|..|+..||-+|+..+.
T Consensus 9 ~~~C~iC~KTKF-ADG~Gh-~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 9 APTCGICHKTKF-ADGCGH-NCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCCSSSSCSCC-CSSCCE-EBTTTCCEECTTSEEEEE
T ss_pred cchhhhhcccee-ccCCCc-cccccCCeeecccCCEee
Confidence 467999985321 468888 788999999999999987
No 178
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.91 E-value=7.7 Score=28.77 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=25.9
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccccCCcCCCc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHVGVVCMT 479 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~sC~~ 479 (655)
.+...||.|...+... .. ..|+|.||..|...+ ...|+.
T Consensus 4 ~~~~~C~IC~~~~~~p--~~---l~CgH~fC~~Ci~~~--~~~CP~ 42 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP--KL---LPCLHTLCSGCLEAS--GMQCPI 42 (56)
T ss_dssp CCCSSCSSSCSSCBCC--SC---STTSCCSBTTTCSSS--SSSCSS
T ss_pred ccCCCceEeCCccCCe--EE---cCCCCcccHHHHccC--CCCCCc
Confidence 3456799998765421 11 258999999998763 445653
No 179
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.85 E-value=4.4 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=18.6
Q ss_pred CccCCccCccccccCCcceEEccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIH 628 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~ 628 (655)
.+-||+|+..+.-...=+-+.|.+|++.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCE
Confidence 4789999973222222367899999864
No 180
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=58.82 E-value=25 Score=33.38 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 94 f~l~i~fp~~YP~~-PP~V~F~T 115 (193)
T 2f4z_A 94 FTLDIVIPPDYPYN-PPKMKFVT 115 (193)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCcCCCC-CCeEEEec
Confidence 78999999999997 99886544
No 181
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.70 E-value=7.3 Score=32.75 Aligned_cols=34 Identities=26% Similarity=0.958 Sum_probs=26.7
Q ss_pred ccCccccceeEEecCcCceeccccC-----eeeeccccccc
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCG-----QYFCYRCNKAI 557 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~-----~~FC~~C~~~~ 557 (655)
..||.|+..++..+| ...|..|+ ..||-.|++++
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 789999999998876 55688887 45677777775
No 182
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=57.86 E-value=4.5 Score=37.63 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEe
Q 006225 232 IVLTCLLPKSYPSHLPPYFTI 252 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l 252 (655)
+.|.|.||.+||.. ||.+.+
T Consensus 85 F~L~~~fPe~YP~~-PPeV~F 104 (172)
T 2z6o_A 85 FDIEFDIPITYPTT-APEIAV 104 (172)
T ss_dssp EEEEEECCTTTTTS-CCCCBC
T ss_pred EEEEEECCCCCCCC-CCeeee
Confidence 78999999999998 887765
No 183
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=57.43 E-value=7.6 Score=28.79 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=25.6
Q ss_pred hhhhhhhcccCCC----------CCCChhhHHHHHHHHh
Q 006225 111 EVKEKQDEEEGLP----------SNSNVNDVESILRELS 139 (655)
Q Consensus 111 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 139 (655)
|.+|++|-+.||+ .++|++-|+.+|.++.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef~ 50 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREFA 50 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 4789999999998 8999999999998763
No 184
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=57.39 E-value=4.2 Score=31.21 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=21.1
Q ss_pred cCccCCccCccccccCCcceEEccccccccccccccccc
Q 006225 600 HGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVR 638 (655)
Q Consensus 600 ~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~ 638 (655)
....||-|...+.. -..-..||+.||+.|...|.
T Consensus 4 ~~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 4 VAERCPICLEDPSN-----YSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHH
T ss_pred CCCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHH
Confidence 34689999876542 11223567777777776665
No 185
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=56.95 E-value=5.4 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=23.3
Q ss_pred CccCCccCccccccCCcceEEcccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~F 629 (655)
...||.|+...+-...=..+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 36899999988777666778998888766
No 186
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=56.52 E-value=4.3 Score=40.38 Aligned_cols=33 Identities=9% Similarity=-0.172 Sum_probs=22.7
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
+....||.|...+... . . ..|||.||..|...|
T Consensus 206 ~~~~~c~i~~~~~~dP---v-~-~~~gh~f~~~~i~~~ 238 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---C-I-TPSGITYDRKDIEEH 238 (281)
T ss_dssp CSTTBCTTTCSBCSSE---E-E-CSSCCEEETTHHHHH
T ss_pred CcccCCcCcCCHhcCC---e-E-CCCCCEECHHHHHHH
Confidence 4567899998765422 1 1 248999999997644
No 187
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=56.38 E-value=6 Score=35.50 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=22.2
Q ss_pred cCCCcccccCCCCCcccccc-----ccccccccccee
Q 006225 432 SMSDVAYCPRCETPCIEDEE-----QHAQCSKCFYSF 463 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~-----~~~~C~~C~~~f 463 (655)
.+..+.+||.|++.+....+ ..+.|+.|++.+
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 45578899999998765432 357888888754
No 188
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=56.34 E-value=5.3 Score=31.70 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=23.8
Q ss_pred CccCCccCccccccCCcceEEccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYC 630 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC 630 (655)
...||.|+...+-...=..+.|..|+..|=
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 468999999888776667889988887663
No 189
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=56.12 E-value=3.3 Score=38.21 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=25.0
Q ss_pred ccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
..||-|...+.. -++...||+.||+.|...|..
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHH
Confidence 479999877653 455556888888888888863
No 190
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=56.11 E-value=5 Score=42.59 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=22.5
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
....||-|..... +.+ ...|||.||+.|...|
T Consensus 331 ~~~~C~ICle~~~-----~pv-~lpCGH~FC~~Ci~~w 362 (389)
T 2y1n_A 331 TFQLCKICAENDK-----DVK-IEPCGHLMCTSCLTSW 362 (389)
T ss_dssp SSSBCTTTSSSBC-----CEE-EETTCCEECHHHHHHH
T ss_pred CCCCCCccCcCCC-----CeE-EeCCCChhhHHHHHHH
Confidence 3468999976552 223 3459999999998765
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=56.01 E-value=6.7 Score=30.82 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.7
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecccc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCN 554 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~ 554 (655)
+.-.||.|+..+.....-..+.|+.|+..|=..=|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCCC
Confidence 45679999999988766567888877776644433
No 192
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=55.88 E-value=5 Score=29.23 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.8
Q ss_pred CccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
...||-|...+...+ ..+.-..|++.||+.|...|..
T Consensus 5 ~~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 5 SSGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CCSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHH
T ss_pred CCcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHH
Confidence 367999987764322 2344457999999999999974
No 193
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=55.55 E-value=5.8 Score=31.39 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=22.9
Q ss_pred CccCCccCccccccCCcceEEcccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~F 629 (655)
...||.|+....-..+=..+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46899999888766665778998888766
No 194
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=55.20 E-value=3.6 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=25.6
Q ss_pred CccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
...||-|...+.. -++...||+.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHH
Confidence 3579999877642 455546999999999988863
No 195
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=55.17 E-value=3.6 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=24.7
Q ss_pred ccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
..||-|...+.. -++...||+.||..|...|..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHT
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHH
Confidence 579999877643 344446899999999988864
No 196
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.58 E-value=5.6 Score=28.04 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=20.1
Q ss_pred hhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 110 EEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
.|.++++|.+-||+ +++|++.|.+.|
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHH
Confidence 46778999999998 667787776654
No 197
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=54.04 E-value=6.1 Score=37.31 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 70 f~l~i~fp~~YP~~-PP~V~F~t 91 (179)
T 2z5d_A 70 WKVRVDLPDKYPFK-SPSIGFMN 91 (179)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEeeCCCCCCCC-CceEEEec
Confidence 78999999999997 99886654
No 198
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=54.02 E-value=8.4 Score=36.54 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+.+..
T Consensus 91 f~l~i~fp~~YP~~-PP~V~f~t 112 (186)
T 1zuo_A 91 ILLNFSFKDNFPFD-PPFVRVVL 112 (186)
T ss_dssp EEEEEECCTTTTSS-CCEEEEEE
T ss_pred EEEEEECCCCCCCC-CCeEEEeC
Confidence 78999999999997 99776543
No 199
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.41 E-value=4.2 Score=31.44 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccccccC
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV 473 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~ 473 (655)
.+...||.|...+.. .-..|+|.||..|...|-.
T Consensus 13 ~~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 13 TDEEECCICMDGRAD------LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC
T ss_pred CCCCCCeeCCcCccC------cccCCCCcccHHHHHHHHH
Confidence 345679999876543 2236899999999887643
No 200
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=53.29 E-value=50 Score=32.76 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCCCCeEEee
Q 006225 232 IVLTCLLPKSYPSHLPPYFTIS 253 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~ 253 (655)
+.|.|.||++||.. ||.+...
T Consensus 109 f~l~i~fp~~YP~~-PP~V~F~ 129 (253)
T 3e46_A 109 YQLEIKIPETYPFN-PPKVRFI 129 (253)
T ss_dssp EEEEEECCTTTTSS-CCEEEES
T ss_pred EEEEEECCCCCCCC-CCeeeec
Confidence 78999999999998 9987654
No 201
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.39 E-value=4.2 Score=32.46 Aligned_cols=32 Identities=28% Similarity=0.575 Sum_probs=22.1
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
+...||.|...+... +.. .|+|.||..|...|
T Consensus 18 ~~~~C~IC~~~~~~p----~~~-~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 18 EEVTCPICLELLKEP----VSA-DCNHSFCRACITLN 49 (85)
T ss_dssp TTTSCTTTCSCCSSC----EEC-TTSCCBCHHHHHHH
T ss_pred cCCCCcCCChhhCcc----eeC-CCCCHHHHHHHHHH
Confidence 456799998765332 122 58999999997643
No 202
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=51.15 E-value=7.6 Score=28.16 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.1
Q ss_pred hhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 110 EEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
.+.+|.||.+-||+ +++|+..|++.|
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46789999999998 778888887643
No 203
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=50.98 E-value=58 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 57 f~~~i~fp~~YP~~-pP~v~f~t 78 (201)
T 3k9o_A 57 YQLEIKIPETYPFN-PPKVRFIT 78 (201)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEECCCcCCCC-CCcccccc
Confidence 78999999999998 99876543
No 204
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=50.83 E-value=10 Score=30.85 Aligned_cols=37 Identities=22% Similarity=0.604 Sum_probs=28.4
Q ss_pred cCCCcccccCCCCCcccccccccccccccceeeccccc
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
.+.+...|..|+..+.. -.....|..||..||..|-.
T Consensus 15 ~d~~~~~C~~C~~~Fs~-~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSI-SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCCBCTTTCCBCBT-TBCCEECTTTCCEECSGGGC
T ss_pred cCccCCcccCcCCcccC-ccccccCCCCCCEEChHHhC
Confidence 44566789999987643 23567899999999999976
No 205
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.76 E-value=2.9 Score=32.05 Aligned_cols=35 Identities=23% Similarity=0.685 Sum_probs=26.7
Q ss_pred ccCccccceeEEecCcCceeccccCeeeeccccccccC
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAIDG 559 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~~~ 559 (655)
+.|-.|...+...+ ...|++|+..||..|-.-+|.
T Consensus 16 ~~C~~C~~~~~~~~---~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 16 RFCYGCQGELKDQH---VYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp CEETTTTEECTTSE---EECCTTTTCCBCHHHHHTTTT
T ss_pred CcccccCcccCCCc---cEECCccCcCcccchhHHHHh
Confidence 56999998874221 267999999999999876643
No 206
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=50.39 E-value=9.4 Score=26.15 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.5
Q ss_pred hhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 110 EEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
.|.++++|.+-||+ +++|++.|++.|
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35578888888987 777888777654
No 207
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.52 E-value=14 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.602 Sum_probs=25.7
Q ss_pred cccccCCCCCcc--cccccccccccccceeeccccc
Q 006225 436 VAYCPRCETPCI--EDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 436 ~~~CP~C~~~~~--~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
...|-.|+-.+- .+....+.|..|++..|..|..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 356888887664 3455789999999999998743
No 208
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=49.00 E-value=12 Score=33.53 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.+.||++||.. ||.+....
T Consensus 59 f~~~i~fp~~YP~~-PP~v~f~t 80 (138)
T 1jat_B 59 YSLSIDCGPNYPDS-PPKVTFIS 80 (138)
T ss_dssp EEEEEECCTTTTTS-CCEEEESB
T ss_pred EEEEEECCCCCCCC-CCceEEEc
Confidence 78999999999997 99876544
No 209
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.89 E-value=12 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=18.7
Q ss_pred cccCccccc-eeEEecCcCceeccccCee
Q 006225 521 AKQCPSCKM-AISRTEGCNKIVCNNCGQY 548 (655)
Q Consensus 521 ~k~CP~C~~-~iek~~Gcn~m~C~~C~~~ 548 (655)
...||.|+. .|..+..-..+.|..||..
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 457999986 5655544455778777643
No 210
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.89 E-value=8.3 Score=30.28 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.0
Q ss_pred CccCCccCccccccCCcceEEcccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~F 629 (655)
...||.|+...+-...=+.+.|..|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 36899999988777666678898888766
No 211
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.84 E-value=10 Score=27.61 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=22.0
Q ss_pred hhhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 109 GEEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 109 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
..|.++++|.+-||+ +++|+++|.+.|
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 457789999999998 778888887755
No 212
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=48.78 E-value=12 Score=34.42 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 74 f~l~i~fp~~YP~~-PP~v~F~t 95 (156)
T 2q0v_A 74 YSLTIFCDDNYPDS-PPTVKFDT 95 (156)
T ss_dssp EEEEEECCTTTTTS-CCEEEESB
T ss_pred EEEEEECCCcCCCC-CCeEEEEc
Confidence 78999999999997 99876543
No 213
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=48.19 E-value=12 Score=34.09 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 48 f~~~i~fp~~YP~~-pP~v~f~t 69 (152)
T 2onu_A 48 WKVHVTLPDDYPFA-SPSIGFMN 69 (152)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEcCcccCCCC-CCeEEEec
Confidence 78999999999997 99886543
No 214
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=47.80 E-value=12 Score=34.02 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 51 f~~~i~fp~~YP~~-PP~v~f~t 72 (154)
T 1c4z_D 51 FRIEINFPAEYPFK-PPKITFKT 72 (154)
T ss_dssp EEEEEECCTTTTTS-CCEEEESS
T ss_pred EEEEEEeCCCCCCC-CCEEEEeC
Confidence 78999999999997 99876544
No 215
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=47.51 E-value=8.2 Score=34.17 Aligned_cols=33 Identities=21% Similarity=0.718 Sum_probs=24.7
Q ss_pred HHhcccccCccccceeEEecCcCceeccccCeee
Q 006225 516 EILRDAKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 516 ~i~~~~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
+++.+.-.||.|+....-.+|- ...|+.|++.|
T Consensus 22 ~~M~~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp -CCCCSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred cccccCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 3455678899999887777774 57799888876
No 216
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=47.38 E-value=65 Score=33.14 Aligned_cols=22 Identities=27% Similarity=0.750 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 129 F~l~I~fP~dYP~~-PP~V~F~T 150 (323)
T 3ceg_A 129 FEFDVYFPQDYPSS-PPLVNLET 150 (323)
T ss_dssp EEEEEECCTTTTTS-CCEEEECC
T ss_pred EEEEEeCCCCCCCC-CCeEEEec
Confidence 78999999999997 99876543
No 217
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=47.27 E-value=5.4 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.570 Sum_probs=30.2
Q ss_pred ccccCCCCCcccccccccccccccceeeccccccccCCc-CCC
Q 006225 437 AYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHVGV-VCM 478 (655)
Q Consensus 437 ~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~-sC~ 478 (655)
..|-.|+..+... ...+|+.|+..||..|-.-.|..+ .|+
T Consensus 16 ~~C~~C~~~~~~~--~~y~C~~C~~~FC~dCD~fiHe~Lh~CP 56 (59)
T 1z60_A 16 RFCYGCQGELKDQ--HVYVCAVCQNVFCVDCDVFVHDSLHSCP 56 (59)
T ss_dssp CEETTTTEECTTS--EEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred CcccccCcccCCC--ccEECCccCcCcccchhHHHHhhccCCc
Confidence 4688888776422 247899999999999998777765 454
No 218
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=46.85 E-value=12 Score=34.24 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 58 f~~~i~fp~~YP~~-PP~v~f~t 79 (157)
T 2gjd_A 58 YPITVEYPNEYPSK-PPKVKFPA 79 (157)
T ss_dssp EEEEEECCTTTTTS-CCEEECCT
T ss_pred EEEEEEcCCCCCCC-CCeeeccC
Confidence 78999999999997 99886543
No 219
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=46.79 E-value=8.8 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=22.3
Q ss_pred ccCCccCcccccc----CCcceEEcccccccc
Q 006225 602 LSCPNCRQFNAKV----GNNNHMFCWACQIHY 629 (655)
Q Consensus 602 k~CP~C~~~ieK~----~GCnhm~C~~C~~~F 629 (655)
+=||.|+.++.-. .+.+.+.|..|++.+
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 5699999876532 567899999999866
No 220
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.44 E-value=9.3 Score=29.63 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=21.9
Q ss_pred ccccCCCCCccccccccccccccccee
Q 006225 437 AYCPRCETPCIEDEEQHAQCSKCFYSF 463 (655)
Q Consensus 437 ~~CP~C~~~~~~~~~~~~~C~~C~~~f 463 (655)
..|..|+..+.......++|+.||+..
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EECCCCCCeeecCCCCceECCCCCcEE
Confidence 459999988876666789999999874
No 221
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.06 E-value=9.4 Score=33.12 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=21.5
Q ss_pred ccCCccCcccccc----CCcceEEcccccccc
Q 006225 602 LSCPNCRQFNAKV----GNNNHMFCWACQIHY 629 (655)
Q Consensus 602 k~CP~C~~~ieK~----~GCnhm~C~~C~~~F 629 (655)
+-||.|+.++.-. .+.+.+.|..|++.+
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 5699999765333 257889999999876
No 222
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=46.03 E-value=14 Score=33.97 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.+.||++||.. ||.+....
T Consensus 53 f~~~i~fp~~YP~~-PP~v~f~t 74 (160)
T 1y8x_A 53 FVFSFKVGQGYPHD-PPKVKCET 74 (160)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEeCCCcCCCC-CCEEEEec
Confidence 78999999999997 99876543
No 223
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=45.99 E-value=14 Score=34.08 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 61 f~~~i~fp~~YP~~-PP~v~f~t 82 (161)
T 2grr_A 61 FKLRMLFKDDYPSS-PPKCKFEP 82 (161)
T ss_dssp EEEEEECCTTTTSS-CCEEEESS
T ss_pred EEEEEEcCcccCCC-CCEEEEec
Confidence 77899999999997 99876543
No 224
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=45.93 E-value=6.6 Score=35.41 Aligned_cols=43 Identities=16% Similarity=0.411 Sum_probs=28.9
Q ss_pred cCCCcccccCCCCCcccccccccccccccceeeccccccccC--CcCCCc
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV--GVVCMT 479 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~--~~sC~~ 479 (655)
...+...||.|...+... +.. .|||.||..|...|-. ...|+.
T Consensus 27 ~l~~~~~C~IC~~~~~~p----v~~-~CgH~FC~~Ci~~~~~~~~~~CP~ 71 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP----FQA-QCGHRYCSFCLASILSSGPQNCAA 71 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE----EEC-TTSCEEEHHHHHHHGGGSCEECHH
T ss_pred cCCcCcCCCCCChhhcCc----EEC-CCCCccCHHHHHHHHhcCCCCCCC
Confidence 334556899998766432 222 7999999999987643 235753
No 225
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=45.82 E-value=5.5 Score=32.62 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=24.5
Q ss_pred CccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
...||-|...+.. -++-..||+.||+.|...|..
T Consensus 13 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHH
Confidence 3679999976642 344433899999999988864
No 226
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=45.63 E-value=14 Score=34.72 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 73 f~~~i~fp~~YP~~-PP~v~F~t 94 (180)
T 2nvu_C 73 FVFSFKVGQGYPHD-PPKVKCET 94 (180)
T ss_dssp EEEEEECCTTTTTS-CCEEEECS
T ss_pred EEEEEeCCCcCCCC-CCcCceec
Confidence 78999999999997 99876543
No 227
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=45.35 E-value=86 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.779 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
|-|.+-||.+||.. ||.+.+..
T Consensus 83 ~pi~IwlP~~YP~~-PP~v~v~p 104 (162)
T 3r3q_A 83 IPVIMWVPSMYPVK-PPFISINL 104 (162)
T ss_dssp EEEEEECCTTTTTS-CCEEEECG
T ss_pred ccEEEEeCcccCCC-CCEEEEEC
Confidence 67889999999997 99887754
No 228
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.61 E-value=11 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=22.4
Q ss_pred cccchhhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 105 SLSIGEEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
+.+...|.++++|.+-||+ .++|++.|++.|
T Consensus 4 ~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L 44 (63)
T 2dak_A 4 GSSGPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 44 (63)
T ss_dssp CSCCCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445678889999999997 566666665544
No 229
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=44.57 E-value=15 Score=33.89 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.+.||++||.. ||.+....
T Consensus 78 f~l~i~fp~~YP~~-PP~v~F~T 99 (160)
T 2a4d_A 78 YSLKIECGPKYPEA-PPFVRFVT 99 (160)
T ss_dssp EEEEEECCTTTTTS-CCEEEESB
T ss_pred EEEEEECCCcCCCC-CcEEEEec
Confidence 78999999999997 99876543
No 230
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.47 E-value=7.8 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=23.9
Q ss_pred CccCCccCccccccCCcceEEcccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVRR 639 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~~ 639 (655)
...||-|...+.. -++ ..|++.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV-TKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhcC-----eeE-ccCCCHhHHHHHHHHHH
Confidence 4679999877633 233 36888888888888863
No 231
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.18 E-value=14 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=21.6
Q ss_pred hhhhhhhhhcccCCC----------CCCChhhHHHHHH
Q 006225 109 GEEVKEKQDEEEGLP----------SNSNVNDVESILR 136 (655)
Q Consensus 109 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 136 (655)
..|.++++|.+-||+ +++|++.|++.|-
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467889999999998 6777777766543
No 232
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=44.10 E-value=8.9 Score=35.12 Aligned_cols=32 Identities=13% Similarity=0.544 Sum_probs=24.1
Q ss_pred cccCcc--ccceeEEecCcCceeccccCeeeecc
Q 006225 521 AKQCPS--CKMAISRTEGCNKIVCNNCGQYFCYR 552 (655)
Q Consensus 521 ~k~CP~--C~~~iek~~Gcn~m~C~~C~~~FC~~ 552 (655)
-+.||. |+..+.-...-+...|.+||..+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 477998 99866554444678899999988763
No 233
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=44.00 E-value=1.2e+02 Score=31.87 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCCCCeEEee
Q 006225 232 IVLTCLLPKSYPSHLPPYFTIS 253 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~ 253 (655)
+.|.+.||++||.. ||.+...
T Consensus 52 f~~~i~fp~~YP~~-pP~v~f~ 72 (399)
T 4ddg_A 52 FFLTIHFPTDYPFK-PPKVAFT 72 (399)
T ss_dssp EEEEEECCSSTTTS-CCEEEES
T ss_pred EEEEEECCcccCCC-CcEEEee
Confidence 77999999999997 9977543
No 234
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=43.75 E-value=57 Score=31.48 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 52 f~l~i~fP~~YP~~-PP~V~F~T 73 (215)
T 1tte_A 52 FVVDIEVPMEYPFK-PPKMQFDT 73 (215)
T ss_dssp CEEEEECCSCSSSC-CCEEEETT
T ss_pred EEEEEeCCccCCCC-CCcccccC
Confidence 77999999999997 99886543
No 235
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.74 E-value=11 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.545 Sum_probs=24.3
Q ss_pred cccccccccccccCCCeEecCC-CCcccHhhHHHHH
Q 006225 347 SFHECRICFSEFAGTDFVRLPC-HHFFCWKCMKTYL 381 (655)
Q Consensus 347 ~~~~C~IC~e~~~~~~~~~l~C-~H~fC~~Cl~~yi 381 (655)
+..-|.||.++- .+.-+.| +-.||..||++.=
T Consensus 7 e~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDA---TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCC---eEEecCCCCceehHHHHHHHc
Confidence 446799999882 3334589 7889999999863
No 236
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=42.96 E-value=8.4 Score=32.86 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=23.6
Q ss_pred CccCCccCccccccCCc------------ceEEccccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNN------------NHMFCWACQIHYCYLCKKIVR 638 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GC------------nhm~C~~C~~~FC~~C~~~~~ 638 (655)
...||-|...+....+. ..+.-..|++.||..|+..|.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 35899998776543210 112233578888888887776
No 237
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.80 E-value=8.9 Score=30.80 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=27.5
Q ss_pred ccccCCCCCccc----------ccccccccccccceeeccccccccCC-cCCCc
Q 006225 437 AYCPRCETPCIE----------DEEQHAQCSKCFYSFCTLCRERRHVG-VVCMT 479 (655)
Q Consensus 437 ~~CP~C~~~~~~----------~~~~~~~C~~C~~~fC~~C~~~~H~~-~sC~~ 479 (655)
..|+.|...+.. .....+.-+.|+|.|+..|...|-.. .+|+.
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 69 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence 358888776543 12223334479999999999887443 35763
No 238
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=42.78 E-value=33 Score=34.30 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=25.3
Q ss_pred hcccccCccccceeEEecCcCceeccccCee
Q 006225 518 LRDAKQCPSCKMAISRTEGCNKIVCNNCGQY 548 (655)
Q Consensus 518 ~~~~k~CP~C~~~iek~~Gcn~m~C~~C~~~ 548 (655)
....++||.|+.+.....+-..+.|+.|+..
T Consensus 104 ~~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 104 YRSHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp HHTTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred hhcCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 4568999999999987776677889999864
No 239
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.72 E-value=13 Score=32.80 Aligned_cols=35 Identities=26% Similarity=0.733 Sum_probs=26.2
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+.. .-..-.|..||..||..|....
T Consensus 69 ~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCcccc--ccccccCCCCCeEEChHHhCCc
Confidence 4569999987642 2244679999999999998764
No 240
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.99 E-value=15 Score=29.90 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=26.3
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+.. --.+-.|..||..||..|....
T Consensus 14 ~~~C~~C~~~F~~--~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSV--LKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCS--SSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCcccc--chhhhhhcCCCcEEChhhcCCc
Confidence 5679999987632 2234579999999999998654
No 241
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.78 E-value=50 Score=30.12 Aligned_cols=36 Identities=19% Similarity=0.606 Sum_probs=28.9
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeecccccc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKA 556 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~ 556 (655)
+...|..|..++-...+. ...|..|++.+|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~ 102 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHA 102 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEEC
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhcccccc
Confidence 467799999987655554 567999999999999953
No 242
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.73 E-value=15 Score=29.26 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=23.8
Q ss_pred CccCCccCccccccCCcceEEccccccccccccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKI 636 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~ 636 (655)
..+|..|+..+...+ +.|. |+..||-.=.-+
T Consensus 25 ~nRC~~CrKkvgL~g----f~Cr-Cg~~FCs~HRy~ 55 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCR-CGNLFCGLHRYS 55 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECT-TSCEECSSSCST
T ss_pred CCcChhhCCcccccC----eecC-CCCEechhcCCC
Confidence 458999998886653 8996 999999765443
No 243
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=41.72 E-value=62 Score=30.52 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec------ccCCHHHHHHHHHHHHHHHH
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA------RWLNSTKISNLCSMLESIWI 274 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s------~wL~~~~l~~L~~~L~~~~e 274 (655)
-.|.|.||.+||.+ ||...... .|-....+..+........+
T Consensus 40 H~l~v~l~~~yp~~-~P~~~~DlP~~~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 40 HLITLKLKAKYPAE-SPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp EEEEEECCTTTTTS-CCEEECCCSSCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCC-CCeeEEcCCCCcccccCCCccHHHHHHHHHHHHH
Confidence 56889999999997 88776654 35554444444444333333
No 244
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.68 E-value=8.7 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=22.8
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....||.|...+... +.-+.|||.||..|...|
T Consensus 6 ~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp SCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHH
T ss_pred cEeECcCcCchhcCC----EEcCCCCCeecHHHHHHH
Confidence 456799998765421 222358999999997654
No 245
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=41.43 E-value=18 Score=33.75 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCCCCCCeEEee
Q 006225 232 IVLTCLLPKSYPSHLPPYFTIS 253 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~ 253 (655)
+.|.|.||++||.. ||.+...
T Consensus 57 f~~~i~fp~~YP~~-PP~v~F~ 77 (171)
T 1yf9_A 57 WMLHVQLPSDYPFK-SPSIGFC 77 (171)
T ss_dssp EEEEEECCTTTTTS-CCEEEES
T ss_pred EEEEEEcCCCCCCC-CCeEEee
Confidence 78999999999997 9987654
No 246
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.11 E-value=38 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.652 Sum_probs=28.8
Q ss_pred ccccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
+...|..|....-...+.. ..|..|++.+|-.|+...
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 4677999998874433433 679999999999999874
No 247
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=40.80 E-value=15 Score=29.18 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=21.8
Q ss_pred cccCccccceeEEecCcCceeccccCeeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFC 550 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC 550 (655)
+..|| |+....-..+-....|+ ||..+=
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEE
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeee
Confidence 35799 99998888887778887 876653
No 248
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=40.68 E-value=10 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=20.5
Q ss_pred cccccCCCCCcccccccccccccccce
Q 006225 436 VAYCPRCETPCIEDEEQHAQCSKCFYS 462 (655)
Q Consensus 436 ~~~CP~C~~~~~~~~~~~~~C~~C~~~ 462 (655)
...|+.|+..+.......+.|+.||+.
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCce
Confidence 345999998876555667799999984
No 249
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.16 E-value=16 Score=29.65 Aligned_cols=35 Identities=34% Similarity=0.806 Sum_probs=26.6
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+.. .-..-.|..||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccC--ccccccCCCCCCEEChHHhCCe
Confidence 5679999987642 2234579999999999998764
No 250
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.94 E-value=15 Score=28.53 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=24.4
Q ss_pred cCccCCccCccccccCCcceEEcccccccccccccccc
Q 006225 600 HGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIV 637 (655)
Q Consensus 600 ~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~ 637 (655)
...+|..|+..+... -+.| +|+..||-.=.-+-
T Consensus 14 ~~~rC~~C~kkvgl~----~f~C-rCg~~FC~~HR~~e 46 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKC-KCGSTFCGSHRYPE 46 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEEC-TTSCEECSSSCSST
T ss_pred cCCcChhhCCccccc----CeEe-ecCCEecccCCCcc
Confidence 357899998876433 5899 79999997655443
No 251
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.66 E-value=13 Score=29.88 Aligned_cols=37 Identities=22% Similarity=0.480 Sum_probs=30.6
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
....|.+|+..+-.--..-..|+.|.|..|..|....
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 4567999999876666677899999999999999754
No 252
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=39.42 E-value=13 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=18.9
Q ss_pred hhhhhhhcccCCC-----------CCCChhhHHHHH
Q 006225 111 EVKEKQDEEEGLP-----------SNSNVNDVESIL 135 (655)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 135 (655)
|.++.+|.+-||. .+||+++|++.|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 5678889999984 677777777654
No 253
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=38.77 E-value=19 Score=32.42 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHHHHhhcC--------CCcccccCCCCCccccc----------cc----------ccccccccce
Q 006225 413 LGDEEFERWESLMLQKTLESM--------SDVAYCPRCETPCIEDE----------EQ----------HAQCSKCFYS 462 (655)
Q Consensus 413 l~~e~~ery~~~~~~~~l~~~--------~~~~~CP~C~~~~~~~~----------~~----------~~~C~~C~~~ 462 (655)
+.++.+......+.+.++-.. +...+|..|+..+.... .. ...||.||+.
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 345655554444444333222 44678999988764332 13 5678888765
No 254
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.35 E-value=15 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.668 Sum_probs=26.3
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+... -..-.|..||..||..|....
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCc--cccccCCCCCCEEChhHcCCc
Confidence 56799998865432 234569999999999998764
No 255
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=38.32 E-value=16 Score=27.61 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=21.1
Q ss_pred CccCCccCccccccCCcceEEcc--cccccc
Q 006225 601 GLSCPNCRQFNAKVGNNNHMFCW--ACQIHY 629 (655)
Q Consensus 601 ~k~CP~C~~~ieK~~GCnhm~C~--~C~~~F 629 (655)
...||.|+...+-.. ..+.|. .|+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 358999999877666 678887 787665
No 256
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=38.24 E-value=84 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.541 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
|-|.+-||.+||.+ ||.+.+..
T Consensus 71 iPi~Iwlp~~YP~~-pP~vfv~p 92 (146)
T 3obq_A 71 IPICLWLLDTYPYN-PPICFVKP 92 (146)
T ss_dssp EEEEEECCTTTTTS-CCEEEECC
T ss_pred ceEEEEeCccCCCC-CCEEEEeC
Confidence 55789999999998 99887754
No 257
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=37.59 E-value=18 Score=29.79 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=23.1
Q ss_pred cCccCCccCcc------ccccCCcceEEcccccccc
Q 006225 600 HGLSCPNCRQF------NAKVGNNNHMFCWACQIHY 629 (655)
Q Consensus 600 ~~k~CP~C~~~------ieK~~GCnhm~C~~C~~~F 629 (655)
..-.||.|+.. |.|..|--+++|..|+..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 45789999854 4456677889999999777
No 258
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.82 E-value=19 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=24.6
Q ss_pred cCccCCccCccccccCCcceEEcccccccccccccccc
Q 006225 600 HGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIV 637 (655)
Q Consensus 600 ~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~ 637 (655)
...+|..|+..+... -+.| +|+..||-.=.-+-
T Consensus 14 ~~~rC~~C~kkvgl~----~f~C-rCg~~FC~~HRy~e 46 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMC-RCGTTFCGSHRYPE 46 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEEC-SSSCEECTTTCSTT
T ss_pred cCCcChhhCCccCcc----CEEe-ecCCEeccccCCcc
Confidence 457899998876443 5899 69999998655443
No 259
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.75 E-value=33 Score=28.04 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=19.2
Q ss_pred cccCccccceeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
.-.||.|+..-.+..+-..-.|..|+..|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 45699999775555444445677676665
No 260
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=36.52 E-value=16 Score=27.15 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=20.9
Q ss_pred hhhhhhhhcccCC-C----------CCCChhhHHHHHH
Q 006225 110 EEVKEKQDEEEGL-P----------SNSNVNDVESILR 136 (655)
Q Consensus 110 ~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~ 136 (655)
-+.++.+|.+-|| + ++||+++|++.|-
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567889999999 5 7788888877653
No 261
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.44 E-value=15 Score=29.31 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=21.7
Q ss_pred cchhhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 107 SIGEEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 107 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
+-..|.++++|.+-||+ .++|+++|++.|
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 44457788999999997 667888876643
No 262
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.35 E-value=20 Score=29.62 Aligned_cols=35 Identities=26% Similarity=0.678 Sum_probs=26.5
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+.. .-..-.|..||..||..|....
T Consensus 20 ~~~C~~C~~~F~~--~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTF--TKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccc--hhhCccccCCCCEECCcccCCe
Confidence 4679999876642 2234669999999999998775
No 263
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=36.27 E-value=36 Score=29.56 Aligned_cols=30 Identities=23% Similarity=0.618 Sum_probs=19.4
Q ss_pred ccccCccccceeEEecCcCceeccccCeee
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
.-..||.|+..-.+..+-..-.|..|+..|
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 346699999855444444455677777666
No 264
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.26 E-value=36 Score=28.14 Aligned_cols=49 Identities=31% Similarity=0.576 Sum_probs=34.6
Q ss_pred cccccccccccc----CCCeEec-CCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCC
Q 006225 348 FHECRICFSEFA----GTDFVRL-PCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVP 405 (655)
Q Consensus 348 ~~~C~IC~e~~~----~~~~~~l-~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~ 405 (655)
...|.||-+++- ++.|+.. .|+-..|+.|+.-- .++|+ -.||. |+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCccc
Confidence 368999999863 3334444 78999999998753 45664 47987 887654
No 265
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=35.77 E-value=19 Score=33.48 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCCCCCCeEEeec
Q 006225 232 IVLTCLLPKSYPSHLPPYFTISA 254 (655)
Q Consensus 232 i~L~~~lP~~YPs~~pP~~~l~s 254 (655)
+.|.|.||++||.. ||.+....
T Consensus 88 f~l~i~fp~~YP~~-PP~v~F~T 109 (170)
T 2hlw_A 88 YSLKIECGPKYPEA-PPFVRFVT 109 (170)
T ss_dssp BCEEEECCSSCTTS-CCEEEECB
T ss_pred EEEEEECCCCCCCC-CCeeEEec
Confidence 67889999999997 99776543
No 266
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.46 E-value=23 Score=26.64 Aligned_cols=27 Identities=22% Similarity=0.927 Sum_probs=19.9
Q ss_pred cccCccccceeEEecCcCceecc--ccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCN--NCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~--~C~~~F 549 (655)
.-.||.|+..++... ....|. .|+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 467999999988766 456676 666555
No 267
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.30 E-value=16 Score=36.82 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=21.5
Q ss_pred CccCCccCcccccc--CCcceEEccccc
Q 006225 601 GLSCPNCRQFNAKV--GNNNHMFCWACQ 626 (655)
Q Consensus 601 ~k~CP~C~~~ieK~--~GCnhm~C~~C~ 626 (655)
.++||.|+..|+|. +|=.-..|+.|+
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 47999999999875 677778888886
No 268
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.22 E-value=72 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=32.4
Q ss_pred ccccCccCCccCccccccCCcceEEccccccccccccccccc
Q 006225 597 FDEHGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKIVR 638 (655)
Q Consensus 597 ~~~~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~~~ 638 (655)
...+...|..|+...--.++.. -.|..|++.+|-.|+....
T Consensus 51 ~~~~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 51 AGDGVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp CSCSSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEECC
T ss_pred ccCCCccccccCCCcccccCCC-CCCCCCCcccccccCCccC
Confidence 3456688999998875555665 5898999999999998764
No 269
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=35.02 E-value=16 Score=36.70 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=21.9
Q ss_pred CccCCccCcccccc--CCcceEEcccccc
Q 006225 601 GLSCPNCRQFNAKV--GNNNHMFCWACQI 627 (655)
Q Consensus 601 ~k~CP~C~~~ieK~--~GCnhm~C~~C~~ 627 (655)
.++||.|+..|++. +|=.-..|+.|+.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 58999999999887 5767778888874
No 270
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.50 E-value=17 Score=36.55 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=21.4
Q ss_pred CccCCccCcccccc--CCcceEEccccc
Q 006225 601 GLSCPNCRQFNAKV--GNNNHMFCWACQ 626 (655)
Q Consensus 601 ~k~CP~C~~~ieK~--~GCnhm~C~~C~ 626 (655)
.++||.|+..|++. +|=.-..|+.|+
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 58999999999887 566777888886
No 271
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=34.49 E-value=33 Score=35.70 Aligned_cols=31 Identities=19% Similarity=0.646 Sum_probs=21.3
Q ss_pred cccCccccceeEEecCcCceeccccCee-eeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQY-FCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~-FC~~C~~~~ 557 (655)
...||-|..... +.+.= .|||. ||..|...|
T Consensus 295 ~~~C~IC~~~~~-----~~v~l-pCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEV-----SVVFI-PCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBC-----CEEEE-TTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCC-----ceEEc-CCCChhHhHHHHhcC
Confidence 467999976542 22333 49999 999997653
No 272
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=34.41 E-value=16 Score=34.75 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=19.6
Q ss_pred cccCcccccee-EEecCcCceeccccCeeeec
Q 006225 521 AKQCPSCKMAI-SRTEGCNKIVCNNCGQYFCY 551 (655)
Q Consensus 521 ~k~CP~C~~~i-ek~~Gcn~m~C~~C~~~FC~ 551 (655)
.+.||+|+..+ .....+ ...|.+|+..|+|
T Consensus 113 ~~~Cp~Cg~g~fma~h~d-R~~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYD-RHYCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSS-CEEETTTCCCBCC
T ss_pred cccCCccCCCccccCccC-CCccCCceeEEEe
Confidence 47899999654 333343 4478888777653
No 273
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.25 E-value=17 Score=36.34 Aligned_cols=27 Identities=33% Similarity=0.744 Sum_probs=21.9
Q ss_pred CccCCccCcccccc--CCcceEEcccccc
Q 006225 601 GLSCPNCRQFNAKV--GNNNHMFCWACQI 627 (655)
Q Consensus 601 ~k~CP~C~~~ieK~--~GCnhm~C~~C~~ 627 (655)
.++||.|+..|++. +|=.-..|+.|+.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 58999999999887 5667778888874
No 274
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=34.06 E-value=17 Score=36.32 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=21.4
Q ss_pred CccCCccCcccccc--CCcceEEccccc
Q 006225 601 GLSCPNCRQFNAKV--GNNNHMFCWACQ 626 (655)
Q Consensus 601 ~k~CP~C~~~ieK~--~GCnhm~C~~C~ 626 (655)
.++||.|+..|.+. +|=.-..|+.|+
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 47999999999877 577778888886
No 275
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.04 E-value=11 Score=33.16 Aligned_cols=35 Identities=29% Similarity=0.793 Sum_probs=25.3
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+... -.+-.|..||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~~--~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANT--ARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSG--GGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCccccc--cccccCCCCCCeeCHHHhCCC
Confidence 46799999876332 234679999999999998764
No 276
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=33.93 E-value=13 Score=30.93 Aligned_cols=35 Identities=23% Similarity=0.639 Sum_probs=26.6
Q ss_pred ccccCCCCCcccccccccccccccceeeccccccccC
Q 006225 437 AYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV 473 (655)
Q Consensus 437 ~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~ 473 (655)
+.|+.|.... .......|..|++.||..|...+|.
T Consensus 4 ~~C~~C~~~~--~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDP--AQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSS--CCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCC--CCCceEECCcCChHHhHHHCHHHhc
Confidence 5788887432 1245678999999999999998675
No 277
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.89 E-value=25 Score=28.50 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=26.7
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
.....|..|+..+.. -.....|..||..||..|-.
T Consensus 12 ~~~~~C~~C~~~F~~-~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSV-LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCS-SSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCcccc-chhhhhhcCCCcEEChhhcC
Confidence 345679999887643 24567899999999999965
No 278
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.39 E-value=16 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.2
Q ss_pred hhhhhhhcccCCC-----------CCCChhhHHHHHHH
Q 006225 111 EVKEKQDEEEGLP-----------SNSNVNDVESILRE 137 (655)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 137 (655)
+.++.+|.+-||. .+||+++|++.|-.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678899999995 77888888776654
No 279
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=33.33 E-value=45 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=19.5
Q ss_pred cccCccccceeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
--.||.|+..-.+..+-..-.|..|+..|
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 45699999776665554445677666665
No 280
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.33 E-value=19 Score=34.82 Aligned_cols=34 Identities=32% Similarity=0.818 Sum_probs=26.0
Q ss_pred ccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
..|+.|+..+.. --.+-.|..||..||..|....
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCCe
Confidence 579999877632 2344679999999999998764
No 281
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=33.26 E-value=14 Score=30.03 Aligned_cols=42 Identities=10% Similarity=-0.174 Sum_probs=26.6
Q ss_pred CCCcccccCCCCCcccccccccccccccceeeccccccccC-CcCCCc
Q 006225 433 MSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV-GVVCMT 479 (655)
Q Consensus 433 ~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~-~~sC~~ 479 (655)
.+....||.|...+... . . ..|||.||..|...|-. ..+|+.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V-~-~~cGhtf~r~~I~~~l~~~~~cP~ 53 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---V-R-LPSGTVMDRSIILRHLLNSPTDPF 53 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---E-E-CTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred CchheECcccCchhcCC---e-E-CCCCCEECHHHHHHHHhcCCCCCC
Confidence 45667899998765321 1 1 24899999999775432 234553
No 282
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.59 E-value=26 Score=28.50 Aligned_cols=35 Identities=29% Similarity=0.741 Sum_probs=26.6
Q ss_pred cccCccccceeEEecCcCceeccccCeeeeccccccc
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYFCYRCNKAI 557 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~FC~~C~~~~ 557 (655)
...|..|+..+... -.+-.|..||..||..|....
T Consensus 21 ~~~C~~C~~~Fs~~--~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTT--VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTT--SCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccc--hhcccccCCCcEEChHHhCCe
Confidence 56799999876432 234679999999999998664
No 283
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.55 E-value=19 Score=31.77 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=26.2
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
....|..|+..+.. -.....|..||..||..|-.
T Consensus 68 ~~~~C~~C~~~Fs~-~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSV-TVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCS-SSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCcccc-ccccccCCCCCeEEChHHhC
Confidence 34579999887643 23567899999999999976
No 284
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.31 E-value=42 Score=26.74 Aligned_cols=30 Identities=23% Similarity=0.633 Sum_probs=18.5
Q ss_pred ccccCccccceeEEecCcCceeccccCeee
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
....||.|+..-.+..+-..-.|..|+..|
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 346699999854443333345577677665
No 285
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=32.04 E-value=19 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=20.1
Q ss_pred hhhhhhhhhcccCC-C----------CCCChhhHHHHH
Q 006225 109 GEEVKEKQDEEEGL-P----------SNSNVNDVESIL 135 (655)
Q Consensus 109 ~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~ 135 (655)
.-+.++.+|.+-|| + ++||++.|++.|
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 34578899999999 5 667777776654
No 286
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.98 E-value=24 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=24.2
Q ss_pred ccCccCCccCccccccCCcceEEccccccccccccccc
Q 006225 599 EHGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKI 636 (655)
Q Consensus 599 ~~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~ 636 (655)
....+|..|+..+... -+.| +|+..||-.=.=+
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~C-rCg~~FCs~HRy~ 55 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKC-RCGSTFCGTHRYP 55 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEEC-TTSCEECTTTCST
T ss_pred ccCccchhhcCccccc----ceEe-ccCCEeccccCCC
Confidence 3457899998776544 5899 7999999764433
No 287
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.75 E-value=19 Score=33.82 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=20.5
Q ss_pred ccCCccCccccccCCcceEEcccccc
Q 006225 602 LSCPNCRQFNAKVGNNNHMFCWACQI 627 (655)
Q Consensus 602 k~CP~C~~~ieK~~GCnhm~C~~C~~ 627 (655)
-.|++|+....+.+ ++|.|..|+.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 57999999887766 9999999985
No 288
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.57 E-value=29 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=26.8
Q ss_pred CCcccccCCCCCcccccccccccccccceeeccccc
Q 006225 434 SDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
.+...|..|+..+..- .....|..||..||..|-.
T Consensus 19 ~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGC
T ss_pred CCCCCCcCcCCccccc-hhcccccCCCcEEChHHhC
Confidence 3456788998876432 3567899999999999975
No 289
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.78 E-value=28 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=18.6
Q ss_pred hhhhhhhhhcccCCC----------CCCChhhHHHH
Q 006225 109 GEEVKEKQDEEEGLP----------SNSNVNDVESI 134 (655)
Q Consensus 109 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 134 (655)
..+.++++|.+-||+ .++|++.|++.
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ew 55 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSA 55 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 457889999999997 55666665543
No 290
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.49 E-value=1e+02 Score=28.11 Aligned_cols=36 Identities=22% Similarity=0.522 Sum_probs=30.2
Q ss_pred cCccCCccCccccccCCcceEEccccccccccccccc
Q 006225 600 HGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKI 636 (655)
Q Consensus 600 ~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~ 636 (655)
+...|-.|..+.--.++. ...|..|++.+|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~ 102 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHA 102 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEEC
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhcccccc
Confidence 468899999988777777 558999999999999953
No 291
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.45 E-value=24 Score=28.19 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=19.1
Q ss_pred hhhhhhhcccCCC-----------CCCChhhHHHHH
Q 006225 111 EVKEKQDEEEGLP-----------SNSNVNDVESIL 135 (655)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 135 (655)
|.++.+|.+-||. .+||+++|++.|
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 5577888888884 788888887654
No 292
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.24 E-value=33 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=26.1
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccc
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
+...|..|+..+..- .....|..||..||..|-.
T Consensus 8 ~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCc-cccccCCCCCCEEChhHcC
Confidence 445799998876432 3567899999999999976
No 293
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=30.22 E-value=41 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=19.0
Q ss_pred cccCccccceeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
--.||.|+..-.+..+-..=.|..|+..|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp CBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred cccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 45699999775555444445677676655
No 294
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.07 E-value=24 Score=32.98 Aligned_cols=26 Identities=27% Similarity=0.737 Sum_probs=21.7
Q ss_pred ccCccccceeEEecCcCceeccccCeee
Q 006225 522 KQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 522 k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
-.|+.|+.++.+.+ ++|.|+.||..-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~e 166 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRVE 166 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCEE
T ss_pred ecccccCCceEECC--CEEECCCCCCEE
Confidence 46999999998865 899999998653
No 295
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=30.00 E-value=21 Score=24.32 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred cCCccCcc---ccccCCcceEEccccccc
Q 006225 603 SCPNCRQF---NAKVGNNNHMFCWACQIH 628 (655)
Q Consensus 603 ~CP~C~~~---ieK~~GCnhm~C~~C~~~ 628 (655)
.||.|+.+ +.+..+-..+.|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 59999954 666678888999889864
No 296
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.74 E-value=27 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.600 Sum_probs=26.1
Q ss_pred cccccCCCCCcccccccccccccccceeeccccccc
Q 006225 436 VAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 436 ~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
...|..|+..+.. -.....|..||..||..|-...
T Consensus 19 ~~~C~~C~~~Fs~-~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFAN-TARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSS-GGGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCcccc-ccccccCCCCCCeeCHHHhCCC
Confidence 3468889887643 3456789999999999997744
No 297
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.51 E-value=14 Score=37.05 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=29.5
Q ss_pred CcccccCCCCCcccccccccccccccceeeccccccccC---CcCCCchHHH
Q 006225 435 DVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV---GVVCMTPEIK 483 (655)
Q Consensus 435 ~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~---~~sC~~~~~~ 483 (655)
....||.|...+... +....|||.||..|...|-. ..+|+..+|.
T Consensus 180 ~el~CPIcl~~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr 227 (267)
T 3htk_C 180 IELTCPITCKPYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACS 227 (267)
T ss_dssp CCSBCTTTSSBCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCS
T ss_pred eeeECcCccCcccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCccccc
Confidence 345799998776322 22236899999999876532 3578875543
No 298
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.10 E-value=20 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred hhhhhhhcccCCC-----------CCCChhhHHHHHH
Q 006225 111 EVKEKQDEEEGLP-----------SNSNVNDVESILR 136 (655)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 136 (655)
|.++.+|.+-||. .+||+++|++.|-
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5678899999984 6778888777653
No 299
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.59 E-value=25 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.749 Sum_probs=19.6
Q ss_pred cCCCcccccCCCCCcccccccccccccccce
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYS 462 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~ 462 (655)
..++++.||.|+.. ......|+.||++
T Consensus 26 ~~p~l~~c~~cG~~----~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK----KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCE----ECTTBCCTTTCBS
T ss_pred cCCCceECCCCCCE----eCCceEcCCCCcC
Confidence 45678899999875 2456778888864
No 300
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.28 E-value=30 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=19.7
Q ss_pred cccCCCCCccccc---ccccccccccceee
Q 006225 438 YCPRCETPCIEDE---EQHAQCSKCFYSFC 464 (655)
Q Consensus 438 ~CP~C~~~~~~~~---~~~~~C~~C~~~fC 464 (655)
.|-+|+..+...+ -+.++||.||+..=
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 5888988776543 35689999998753
No 301
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=27.74 E-value=49 Score=27.55 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=18.4
Q ss_pred cccCccccceeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
--.||.|+..-.+..+-..-.|..|+..|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 45699998765554444444577666655
No 302
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=27.21 E-value=18 Score=30.49 Aligned_cols=43 Identities=9% Similarity=-0.172 Sum_probs=27.6
Q ss_pred cCCCcccccCCCCCcccccccccccccccceeeccccccccC-CcCCCc
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERRHV-GVVCMT 479 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~-~~sC~~ 479 (655)
..++...||.|...+... . . ..|||.||..|...|-. ..+|+.
T Consensus 25 ~~p~~~~CpI~~~~m~dP---V-~-~~cGhtf~r~~I~~~l~~~~~cP~ 68 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---V-R-LPSGTIMDRSIILRHLLNSPTDPF 68 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---E-E-ETTTEEEEHHHHHHHTTSCSBCSS
T ss_pred cCcHhhCCcCccCcccCC---e-E-CCCCCEEchHHHHHHHHcCCCCCC
Confidence 345667899998765321 1 1 24899999999876543 235553
No 303
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=27.19 E-value=23 Score=29.10 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=20.1
Q ss_pred ccccCccccce--eE----EecCcCceeccccCeee
Q 006225 520 DAKQCPSCKMA--IS----RTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 520 ~~k~CP~C~~~--ie----k~~Gcn~m~C~~C~~~F 549 (655)
....||.|+.. |+ +..|--.+.|..||..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 35679999865 22 23455667888888777
No 304
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.07 E-value=33 Score=28.13 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=23.7
Q ss_pred cCccCCccCccccccCCcceEEccccccccccccccc
Q 006225 600 HGLSCPNCRQFNAKVGNNNHMFCWACQIHYCYLCKKI 636 (655)
Q Consensus 600 ~~k~CP~C~~~ieK~~GCnhm~C~~C~~~FC~~C~~~ 636 (655)
...+|..|+..+-.. +-+.| +|+..||-.=.-+
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~C-rCg~~FC~~HRy~ 56 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFEC-RCGNNFCASHRYA 56 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEEC-TTCCEECTTTCST
T ss_pred cCccchhhCCeeccc---CCeEc-CCCCEecccCCCc
Confidence 346899998766332 46899 5999999765544
No 305
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=26.89 E-value=27 Score=27.76 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=18.6
Q ss_pred cccCccccceeEEecCcCceeccccCeee
Q 006225 521 AKQCPSCKMAISRTEGCNKIVCNNCGQYF 549 (655)
Q Consensus 521 ~k~CP~C~~~iek~~Gcn~m~C~~C~~~F 549 (655)
--.||.|+..-.+..+-..=.|..|+..|
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 45699999776555554445576666544
No 306
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.30 E-value=31 Score=29.01 Aligned_cols=17 Identities=18% Similarity=0.642 Sum_probs=14.3
Q ss_pred ccHhhHHHHHHHHhhcC
Q 006225 372 FCWKCMKTYLDIHISEG 388 (655)
Q Consensus 372 fC~~Cl~~yi~~~i~~g 388 (655)
||+.||.+|+...-.+.
T Consensus 43 FCRNCLskWy~~aA~e~ 59 (105)
T 2o35_A 43 FCRNCLSNWYREAAEAS 59 (105)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999998876543
No 307
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.19 E-value=28 Score=33.62 Aligned_cols=32 Identities=25% Similarity=0.683 Sum_probs=25.2
Q ss_pred ccccCCCCCcccccccccccccccceeeccccc
Q 006225 437 AYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 437 ~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
..|+.|+..+.. -.....|..||..||..|-.
T Consensus 162 ~~C~~C~~~F~~-~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 162 RVCHRCRVEFTF-TNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp SBCTTTCCBCCS-SSCCEECTTTCCEECSTTSC
T ss_pred CccCCCCCccCC-cccccccCCcCCEEChHHhC
Confidence 379999887642 23567899999999999976
No 308
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=26.16 E-value=33 Score=32.19 Aligned_cols=35 Identities=9% Similarity=-0.135 Sum_probs=24.5
Q ss_pred cCCCcccccCCCCCcccccccccccccccceeeccccccc
Q 006225 432 SMSDVAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRERR 471 (655)
Q Consensus 432 ~~~~~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 471 (655)
..+....||.|...+.. +.+. .|||.||..|...|
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~--~~Ghtfer~~I~~~ 136 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCIT--PSGITYDRKDIEEH 136 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEEC--TTSCEEEHHHHHHH
T ss_pred CCcHhhcccCccccCCC---CeEC--CCCCEECHHHHHHH
Confidence 34567889999876642 2222 58999999997754
No 309
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.43 E-value=36 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=24.3
Q ss_pred cccCCCCCcccccccccccccccceeeccccc
Q 006225 438 YCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 438 ~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
.|..|+..+..- .....|..||..||..|..
T Consensus 13 ~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLL-NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTT-BCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCc-cccccCCCCCEEEcccccC
Confidence 688898766432 3567899999999999975
No 310
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.23 E-value=31 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.635 Sum_probs=25.2
Q ss_pred cccccCCCCCcccccccccccccccceeeccccc
Q 006225 436 VAYCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 436 ~~~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
...|..|+..+.. -.....|..||..||..|-.
T Consensus 20 ~~~C~~C~~~F~~-~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 20 APNCMNCQVKFTF-TKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CCBCTTTCCBCCS-SSCCEECTTTCCEECGGGSC
T ss_pred CCcCcCCCCcccc-hhhCccccCCCCEECCcccC
Confidence 3468889876643 23457899999999999986
No 311
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=24.42 E-value=45 Score=24.93 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.4
Q ss_pred hhhhhhhhcccCCC----------CCCChhhHHHHHHHHhh
Q 006225 110 EEVKEKQDEEEGLP----------SNSNVNDVESILRELSS 140 (655)
Q Consensus 110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 140 (655)
-|.+|.+|-+.||. .+.|+.-|..+|.++..
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 46789999999997 77889999999988764
No 312
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.07 E-value=33 Score=28.85 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=13.6
Q ss_pred ccHhhHHHHHHHHhhc
Q 006225 372 FCWKCMKTYLDIHISE 387 (655)
Q Consensus 372 fC~~Cl~~yi~~~i~~ 387 (655)
||+.||.+|+..+-.+
T Consensus 42 FCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 42 FCRNCLAKWLMEAATE 57 (104)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877644
No 313
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=24.00 E-value=63 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=24.2
Q ss_pred ccCcccccee-EEecCcCceeccccCeeeeccccc
Q 006225 522 KQCPSCKMAI-SRTEGCNKIVCNNCGQYFCYRCNK 555 (655)
Q Consensus 522 k~CP~C~~~i-ek~~Gcn~m~C~~C~~~FC~~C~~ 555 (655)
..||+|...- .-+..-..+.|..|+...|--=|.
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGG 42 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGG 42 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEECCSS
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeecCCc
Confidence 5799998754 344456678899999888854443
No 314
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.45 E-value=38 Score=25.85 Aligned_cols=23 Identities=35% Similarity=0.843 Sum_probs=16.0
Q ss_pred ccccCccccceeEEecCcCceeccccCe
Q 006225 520 DAKQCPSCKMAISRTEGCNKIVCNNCGQ 547 (655)
Q Consensus 520 ~~k~CP~C~~~iek~~Gcn~m~C~~C~~ 547 (655)
+...||.|+.+.. .|..|+.||+
T Consensus 29 ~l~~c~~cGe~~~-----~H~vc~~CG~ 51 (60)
T 3v2d_5 29 TLVPCPECKAMKP-----PHTVCPECGY 51 (60)
T ss_dssp CCEECTTTCCEEC-----TTSCCTTTCE
T ss_pred ceeECCCCCCeec-----ceEEcCCCCc
Confidence 4677888887653 4666777774
No 315
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=23.13 E-value=52 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=24.5
Q ss_pred hhhhhhhhcccCCC----------CCCChhhHHHHHHHHh
Q 006225 110 EEVKEKQDEEEGLP----------SNSNVNDVESILRELS 139 (655)
Q Consensus 110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 139 (655)
-|.+|.+|-..||. .+-|+.-|..+|.+..
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 36788899999997 6778888888888765
No 316
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.98 E-value=35 Score=33.11 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=24.5
Q ss_pred cccCCCCCcccccccccccccccceeeccccc
Q 006225 438 YCPRCETPCIEDEEQHAQCSKCFYSFCTLCRE 469 (655)
Q Consensus 438 ~CP~C~~~~~~~~~~~~~C~~C~~~fC~~C~~ 469 (655)
.|..|...+.. -.....|..||..||..|-.
T Consensus 166 ~C~~C~~~F~~-~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 166 ECHRCRVQFGV-MTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp BCTTTCCBCBT-TBCCEECTTTCCEECTTTCC
T ss_pred CCcCcCCCCCc-cccccccCCCcCEeChhhcC
Confidence 58889876643 23567899999999999976
No 317
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.75 E-value=46 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.1
Q ss_pred cccchhhhhhhhhcccCCC----------CCCChhhHHHHH
Q 006225 105 SLSIGEEVKEKQDEEEGLP----------SNSNVNDVESIL 135 (655)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 135 (655)
+.+-..+.+|+||.+-||+ ++.||+.|++.|
T Consensus 125 ~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L 165 (171)
T 2qsf_X 125 DYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANIL 165 (171)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445566889999999998 889999888765
No 318
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.43 E-value=56 Score=29.66 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHhcccccCccccce---eEEecCcCceeccccCeeeeccccccccCCCC
Q 006225 501 KQREHEMINELLSVKEILRDAKQCPSCKMA---ISRTEGCNKIVCNNCGQYFCYRCNKAIDGYDH 562 (655)
Q Consensus 501 ~~~e~e~~~e~l~~~~i~~~~k~CP~C~~~---iek~~Gcn~m~C~~C~~~FC~~C~~~~~~~~H 562 (655)
.......++.++.. ...||.|+.+ +.+..+--.+.|..||...-..-.+.-++..|
T Consensus 90 ~~~i~~~L~~yI~~------yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~~~~~~~ 148 (148)
T 2d74_B 90 PYLIANKLKKYIKE------YVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLEHHHHHH 148 (148)
T ss_dssp HHHHHHHHHHHHHH------HSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHH------EEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhhccccCC
No 319
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=22.40 E-value=27 Score=29.17 Aligned_cols=42 Identities=10% Similarity=-0.138 Sum_probs=26.9
Q ss_pred CCCcccccCCCCCccccccccccccccc-ceeeccccccccC-CcCCCc
Q 006225 433 MSDVAYCPRCETPCIEDEEQHAQCSKCF-YSFCTLCRERRHV-GVVCMT 479 (655)
Q Consensus 433 ~~~~~~CP~C~~~~~~~~~~~~~C~~C~-~~fC~~C~~~~H~-~~sC~~ 479 (655)
.++...||.|...+... .. ..|| |.||..|...|-. ..+|+.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~--~~cG~htf~r~cI~~~l~~~~~cP~ 62 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VV--LPSSRVTVDRSTIARHLLSDQTDPF 62 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EE--CTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred CcHhcCCcCccccccCC---eE--CCCCCeEECHHHHHHHHHhCCCCCC
Confidence 34567899998765321 11 2478 9999999876532 234653
No 320
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.37 E-value=3.3e+02 Score=26.02 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=22.5
Q ss_pred cccccccccccCCC-eEec-CCCCcccHhhHHHH
Q 006225 349 HECRICFSEFAGTD-FVRL-PCHHFFCWKCMKTY 380 (655)
Q Consensus 349 ~~C~IC~e~~~~~~-~~~l-~C~H~fC~~Cl~~y 380 (655)
..|.+|...|.... -... .||+.||..|....
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 37999988875321 1223 79999999997754
No 321
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.96 E-value=56 Score=31.98 Aligned_cols=41 Identities=24% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhcccccCccccceeEEecCcCc----eeccccCeee
Q 006225 508 INELLSVKEILRDAKQCPSCKMAISRTEGCNK----IVCNNCGQYF 549 (655)
Q Consensus 508 ~~e~l~~~~i~~~~k~CP~C~~~iek~~Gcn~----m~C~~C~~~F 549 (655)
....+++.|+.. ..+||+|+..-...-+-|. ..|+.|+-.|
T Consensus 22 ~aRVLTE~Wv~~-n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 22 KARILTEDWVYR-QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHHHHHH-HCCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred eehhhhHHHHHH-CCcCCCCCChhhhhccCCCcccccccCCcchhh
No 322
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.95 E-value=75 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=23.6
Q ss_pred ccCcccccee-EEecCcCceeccccCeeeecccc
Q 006225 522 KQCPSCKMAI-SRTEGCNKIVCNNCGQYFCYRCN 554 (655)
Q Consensus 522 k~CP~C~~~i-ek~~Gcn~m~C~~C~~~FC~~C~ 554 (655)
..||+|...- .-+..-..+.|..|+...|--=|
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTG 49 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVEPTG 49 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEecCCC
Confidence 5699998754 34455567889999998885433
No 323
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=21.69 E-value=54 Score=27.83 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.7
Q ss_pred ccccccccccccCCCeEec-CCCCcccHhhHHH
Q 006225 348 FHECRICFSEFAGTDFVRL-PCHHFFCWKCMKT 379 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l-~C~H~fC~~Cl~~ 379 (655)
...|.||.+.-...+++.. .|...|...|+.-
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~ 39 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI 39 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCC
Confidence 3579999876433344544 7888888888763
No 324
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.29 E-value=50 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=23.8
Q ss_pred hhhhhhhhhcccCCC----------CCC-ChhhHHHHHHHHhhcCCCCC
Q 006225 109 GEEVKEKQDEEEGLP----------SNS-NVNDVESILRELSSSVEEPE 146 (655)
Q Consensus 109 ~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~ 146 (655)
..|..+.+|.+-||| +++ |++.|++ +++.+..+++
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~e---wL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACD---WLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHH---HHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHH---HHHhCCCCCC
Confidence 346778899999998 555 7777654 5566655543
No 325
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.86 E-value=48 Score=25.94 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=21.0
Q ss_pred hhhhhhhcccCCC-----------CCCChhhHHHHHHH
Q 006225 111 EVKEKQDEEEGLP-----------SNSNVNDVESILRE 137 (655)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 137 (655)
+.++.+|.+-||. .+||+++|+++|-.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4578888899985 78999888876654
No 326
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.78 E-value=28 Score=30.20 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=19.1
Q ss_pred CCcccccCCCCCccccccccc-ccccccce
Q 006225 434 SDVAYCPRCETPCIEDEEQHA-QCSKCFYS 462 (655)
Q Consensus 434 ~~~~~CP~C~~~~~~~~~~~~-~C~~C~~~ 462 (655)
+...+|..|+..+..+ .... .||.|++.
T Consensus 71 p~~~~C~~CG~~~e~~-~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN-ALDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECSC-CSTTCCCSSSSSC
T ss_pred cceEEcCCCCCEEeCC-CCCCCcCccccCC
Confidence 3456799998876553 3445 78888765
No 327
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.28 E-value=1.9e+02 Score=23.53 Aligned_cols=88 Identities=24% Similarity=0.446 Sum_probs=44.0
Q ss_pred ccccccccccccCCCeEecCCCCcccHhhHHHHHHHHhhcCCcceeccCCCCCCCCCCcccccccCChHHHHHHHHHHHH
Q 006225 348 FHECRICFSEFAGTDFVRLPCHHFFCWKCMKTYLDIHISEGTVSKLQCPDAKCGGMVPPSLLKKLLGDEEFERWESLMLQ 427 (655)
Q Consensus 348 ~~~C~IC~e~~~~~~~~~l~C~H~fC~~Cl~~yi~~~i~~g~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~ery~~~~~~ 427 (655)
.+.|.+|-..|.. ..=|..++.....+ .++.|+. |+..+.. ...+.+-. ..
T Consensus 7 ~~~C~~C~~~f~~-------------~~~l~~H~~~h~~~---~~~~C~~--C~~~f~~--------~~~l~~H~---~~ 57 (124)
T 2dlq_A 7 GVECPTCHKKFLS-------------KYYLKVHNRKHTGE---KPFECPK--CGKCYFR--------KENLLEHE---AR 57 (124)
T ss_dssp SCCCTTTCCCCSS-------------HHHHHHHHHHHSSC---CSCBCTT--TCCBCSS--------HHHHHHHH---HH
T ss_pred CCCCCCCCCcCCC-------------HHHHHHHHHhCCCC---CCeECCC--CCchhcC--------HHHHHHHH---hh
Confidence 4678888665532 23345554433222 3578887 8766542 11121111 00
Q ss_pred HHhhcCCCcccccCCCCCcccc-----------cccccccccccceee
Q 006225 428 KTLESMSDVAYCPRCETPCIED-----------EEQHAQCSKCFYSFC 464 (655)
Q Consensus 428 ~~l~~~~~~~~CP~C~~~~~~~-----------~~~~~~C~~C~~~fC 464 (655)
...........|+.|+..+... ....+.|+.|+..|=
T Consensus 58 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred hhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence 0011233456788888765421 233467777777663
Done!