Query 006227
Match_columns 655
No_of_seqs 166 out of 970
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 8E-100 2E-104 804.4 53.8 566 17-642 2-583 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 2.3E-89 4.9E-94 779.5 43.8 532 43-640 1-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 3E-85 6.5E-90 669.7 43.3 523 21-643 6-548 (549)
4 COG5158 SEC1 Proteins involved 100.0 1.3E-83 2.8E-88 696.1 50.3 554 16-646 2-580 (582)
5 KOG1301 Vesicle trafficking pr 100.0 6.7E-84 1.5E-88 667.6 42.3 561 14-646 8-617 (621)
6 KOG1302 Vacuolar sorting prote 100.0 1.2E-82 2.6E-87 676.3 43.3 553 11-640 10-599 (600)
7 PRK05581 ribulose-phosphate 3- 53.1 18 0.00038 35.7 4.3 44 596-643 171-214 (220)
8 PRK08883 ribulose-phosphate 3- 47.8 23 0.00049 35.4 4.1 45 595-643 167-211 (220)
9 cd00564 TMP_TenI Thiamine mono 46.3 22 0.00049 33.9 3.8 45 595-643 150-194 (196)
10 PLN02334 ribulose-phosphate 3- 45.8 21 0.00046 35.7 3.5 44 596-643 175-218 (229)
11 PRK00043 thiE thiamine-phospha 37.7 33 0.00071 33.5 3.5 44 596-643 161-204 (212)
12 TIGR01163 rpe ribulose-phospha 34.2 49 0.0011 32.2 4.1 44 596-643 166-209 (210)
13 TIGR00693 thiE thiamine-phosph 32.2 50 0.0011 31.9 3.7 42 596-641 153-194 (196)
14 PF14071 YlbD_coat: Putative c 32.1 40 0.00087 30.2 2.6 14 306-319 32-45 (124)
15 cd00429 RPE Ribulose-5-phospha 28.7 72 0.0016 30.9 4.2 44 596-643 167-210 (211)
16 PTZ00170 D-ribulose-5-phosphat 28.6 57 0.0012 32.7 3.4 45 595-643 173-217 (228)
17 PRK08745 ribulose-phosphate 3- 27.4 84 0.0018 31.4 4.4 47 593-643 169-215 (223)
18 TIGR03128 RuMP_HxlA 3-hexulose 26.7 74 0.0016 30.9 3.9 44 595-642 158-201 (206)
19 cd04726 KGPDC_HPS 3-Keto-L-gul 24.6 90 0.002 30.1 4.0 45 594-642 157-201 (202)
20 PRK10039 hypothetical protein; 23.5 1.5E+02 0.0033 26.7 4.7 40 602-641 81-125 (127)
21 PRK08005 epimerase; Validated 23.3 66 0.0014 31.8 2.7 43 597-643 165-207 (210)
22 PRK13307 bifunctional formalde 20.9 86 0.0019 34.2 3.2 45 594-642 329-373 (391)
23 PF12327 FtsZ_C: FtsZ family, 20.7 2E+02 0.0043 24.4 4.8 37 592-628 35-76 (95)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-100 Score=804.45 Aligned_cols=566 Identities=43% Similarity=0.720 Sum_probs=489.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCCH
Q 006227 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (655)
Q Consensus 17 ~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt~ 96 (655)
+|++.++++++..+++ +. ....|||||+|+.+++|+|+||+|++++++||++++.|+..|+|+|.++|||||+|+.
T Consensus 2 ~l~~l~~~kil~~v~~-~~---k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~ 77 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLR-VE---KKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE 77 (593)
T ss_pred chHHHHHHHHHHHhcc-cC---CCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence 4788999999988887 32 2336999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCCCc
Q 006227 97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE 176 (655)
Q Consensus 97 ~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~~~ 176 (655)
++|+++++||....|+|+.+||||+.++|+.+++.|.. ..+...|.++.|++++|+|+|+++|+++.|.+|..+|.+.
T Consensus 78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~- 155 (593)
T KOG1300|consen 78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD- 155 (593)
T ss_pred hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence 99999999997667899999999999999999999974 5578889999999999999999999999999999999965
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCCCCCCCeeEE
Q 006227 177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELL 256 (655)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li 256 (655)
+.......+..+|.+|++||.++|++|.|||++.....| ..+|+++|.++++.++.|+.+.+++|..+++.||
T Consensus 156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl 228 (593)
T KOG1300|consen 156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL 228 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence 445567899999999999999999999999998876554 2689999999999999998766777887899999
Q ss_pred EecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHHHHHHH
Q 006227 257 ILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTG 336 (655)
Q Consensus 257 IlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~ 336 (655)
|+||++|+++||||+||||||+||+++|++|.|.++.+...|+ .+|+++|+++|++|.++||+||++|.+.|++.+++
T Consensus 229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~ 306 (593)
T KOG1300|consen 229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN 306 (593)
T ss_pred EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987655443 37889999999999999999999999999999999
Q ss_pred HHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCCCCCC
Q 006227 337 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKD 416 (655)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~~~~~ 416 (655)
|.++++.... +++..|+.|++++|++||+|+++..+++.|+.||++|++.++. .|.+++.+||++++|.|....
T Consensus 307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 9998865433 2346799999999999999999999999999999999999988 999999999999999654432
Q ss_pred ----------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccCCCC
Q 006227 417 ----------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAF 480 (655)
Q Consensus 417 ----------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~ 480 (655)
.+...||+|++++|.+. .+|+...++.+|+++.|++.+++.++.++..+|..... +.+
T Consensus 381 kik~~~~~~~p~l~~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~~ 454 (593)
T KOG1300|consen 381 KIKDSLRDLLPILLESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DSF 454 (593)
T ss_pred cHHHHHHhhhhhhcccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----Ccc
Confidence 67888999999999998 47999999999999999999999999999999866543 222
Q ss_pred cchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcccccccC
Q 006227 481 SLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRS 560 (655)
Q Consensus 481 ~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~~~ 560 (655)
..+|. .+.++++. .+..|.+|||+|.++.|+|++++++|+.++|||+++++....|. ...+
T Consensus 455 ~~k~~-----~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~-------------~~~S 515 (593)
T KOG1300|consen 455 LLKFD-----PPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS-------------AATS 515 (593)
T ss_pred cccCC-----CCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC-------------cccc
Confidence 22221 12255664 78899999999999999999999999999999998765221111 1112
Q ss_pred CCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 006227 561 RRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 640 (655)
Q Consensus 561 ~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l 640 (655)
+|++.|.+..... .+...++|+||||+||+||+|+|++|++++..+++|+||||+|++|.+|++.|
T Consensus 516 ar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~l 581 (593)
T KOG1300|consen 516 ARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDDL 581 (593)
T ss_pred ccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHHH
Confidence 2333444322110 12347899999999999999999999999999999999999999999999999
Q ss_pred hc
Q 006227 641 KM 642 (655)
Q Consensus 641 ~~ 642 (655)
+.
T Consensus 582 k~ 583 (593)
T KOG1300|consen 582 KL 583 (593)
T ss_pred hh
Confidence 93
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=2.3e-89 Score=779.55 Aligned_cols=532 Identities=32% Similarity=0.583 Sum_probs=402.9
Q ss_pred eEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCCHHHHHHHHHHhccCCCCcceEEEEecC
Q 006227 43 WKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSS 122 (655)
Q Consensus 43 ~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt~~~i~~I~~d~~~~~~~y~~~~i~F~~ 122 (655)
|||||+|+.++++||++|++++|+++||++++.|++.|+|+|+++|||||+|+.+|+++|++|+++ |.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999975 899999999999
Q ss_pred CCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcC-CCcChhhHHHHHHHHHHHHHHHHHHhCC
Q 006227 123 PISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG-DEESSQKADACLNVMATRIATVFASLRE 201 (655)
Q Consensus 123 ~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~ 201 (655)
.+++..++.|++ .++.++|.++.|+++||+|+|+|+|+|++|++|..+|. +.+ .+.++.+|++|+++|.++|.
T Consensus 79 ~~~~~~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~ 152 (564)
T PF00995_consen 79 RVSESLLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGE 152 (564)
T ss_dssp ---HHHHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhHHHHhhhh-cCccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCC
Confidence 999999999987 56999998899999999999999999999999999998 555 68899999999999999999
Q ss_pred ccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHh----hhhcCCCC---CCCCeeEEEecCCCCccccchhhhhh
Q 006227 202 FPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKY----KQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTY 274 (655)
Q Consensus 202 ~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~----~~~~~~~~---~~~~~~LiIlDR~~D~iTPLlh~~TY 274 (655)
+|.|||+|+. .|+++|..+.+.+.+. ......++ ..++++|||+||++|++|||||||||
T Consensus 153 ~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 153 IPNIRYKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp --EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCeEEEeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 9999999982 2555666666555542 22222332 12358999999999999999999999
Q ss_pred hHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCC
Q 006227 275 DAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGS 354 (655)
Q Consensus 275 qaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (655)
||||||+|||++|.|+++.+...+ ..++++.|+++|++|+++||+||++|++.|.+++++++.++ . . ...+
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~-~-----~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-E-K-----SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-c-c-----ccch
Confidence 999999999999999998743332 12478999999999999999999999999999999998654 1 0 1345
Q ss_pred CCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCCCCCC------------CCCchh
Q 006227 355 NLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKD------------DITREN 422 (655)
Q Consensus 355 ~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~~~~~------------~~~~~d 422 (655)
..++++|++||++||+++++++.+++|++|+++|++.+++++|.+++++||+|++|.+..+. ..+.++
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d 370 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIED 370 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHH
Confidence 77999999999999999999999999999999999999999999999999999999755421 678899
Q ss_pred hHHHHHHHHHhCCCCCCc---hHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccCCCCcchhhhhhhhhhc---c--
Q 006227 423 KLRLLMIVASIYPEKFEG---EKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAA---R-- 494 (655)
Q Consensus 423 kLRLl~L~~l~~~~g~~~---~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~---~-- 494 (655)
+|||+|||+++. |++. +.+++++.+.|++.+++.++.+|+++|+...+.+. ..|... .+.+++. .
T Consensus 371 ~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~--~~~~~~---~~~~~l~~~~~~~ 443 (564)
T PF00995_consen 371 KLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNS--SNFQSI---RKKLNLISKFNDK 443 (564)
T ss_dssp HHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTT--S--CTT---C-TT---HHTTCC
T ss_pred HHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCc--cchhhh---ccccccccccccc
Confidence 999999999994 4544 33556666666666999999999999988765210 012111 1222221 1
Q ss_pred -cCCCCCcccceecccchHHHHHHHHHhcCCCC-CCCCCcccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCC
Q 006227 495 -KDRSGGEETWQLSRFYPMIEELVEKLGKNELS-KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSS 572 (655)
Q Consensus 495 -~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~-~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~ 572 (655)
....+.+.+|+|+||+|++++||+.+.+++++ .+.||++........+. ..+++..+ +.|....
T Consensus 444 ~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~-- 509 (564)
T PF00995_consen 444 NDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGS-----------SFSLRSSK-PSRSKTQ-- 509 (564)
T ss_dssp CSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----S-----------SSSSS-------------
T ss_pred ccccccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCC-----------Cccccccc-ccccccc--
Confidence 11246789999999999999999999999997 88999986543111111 01121111 0111000
Q ss_pred CCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC--CeEEEccCcccChhHHHHHH
Q 006227 573 DDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN--REVVLGSSSLDDPPQFITKL 640 (655)
Q Consensus 573 ~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~~--~~iiigsT~Ii~~~~fi~~l 640 (655)
....+++++||||||||||+|++++|+++++.+ ++|+||||+|+||++|+++|
T Consensus 510 ---------------~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 510 ---------------PSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp ------------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred ---------------cccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 011357899999999999999999999999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-85 Score=669.71 Aligned_cols=523 Identities=24% Similarity=0.420 Sum_probs=432.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeeccc-CCCCCCCCeEEEEEcCCHHHH
Q 006227 21 ITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYR-RRQPLPSMEAIYFIQPTKENV 99 (655)
Q Consensus 21 ~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~-~r~~~~~~~aIyfi~Pt~~~i 99 (655)
..|..+ +.|+.... ++.|||++|+.|..++|.|+++|+|+++.|.++++|++ +|+.+.+.+||+||+||++||
T Consensus 6 ~~k~yi-~~m~~~~g-----~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~eni 79 (549)
T KOG1299|consen 6 SSKKYI-EKMIQESG-----PGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTPENI 79 (549)
T ss_pred HHHHHH-HHHHHhcC-----CCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccChHHH
Confidence 444444 47776543 35999999999999999999999999999999999987 789999999999999999999
Q ss_pred HHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCCCcChh
Q 006227 100 VAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQ 179 (655)
Q Consensus 100 ~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~~~~~~ 179 (655)
..++++++ +|+|..|||||+|.+|+..++.||+ ++....|+.|.|+++||+++++++|||++|+.|..... |
T Consensus 80 q~L~~ELr--nPry~~Y~lyFsN~i~ks~le~LAe-sD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~---w-- 151 (549)
T KOG1299|consen 80 QLLIEELR--NPRYGEYHLYFSNIISKSDLERLAE-SDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN---W-- 151 (549)
T ss_pred HHHHHHhc--CCcceeEEEEEeccCCHHHHHHHHh-cchHHHHHHHHHHHHhhhccCCceeecCCchhhccccc---c--
Confidence 99999996 5999999999999999999999997 56788889999999999999999999999998876422 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCCCCCC-CeeEEEe
Q 006227 180 KADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSE-TCELLIL 258 (655)
Q Consensus 180 ~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~-~~~LiIl 258 (655)
....+.++.+||++++.+++..|.|||++++ ..|+++|+.+...+.+ .++..+|+.++ .|+|||+
T Consensus 152 -~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LLiL 217 (549)
T KOG1299|consen 152 -DPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDFRRTDSPPLLLIL 217 (549)
T ss_pred -ChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhcccccCCCCCeEEEE
Confidence 2578899999999999999999999999885 4688999998888876 45567777643 6899999
Q ss_pred cCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecC-CCchHHHHhhhccHHHHHHHHHHHHHHH
Q 006227 259 DRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLE-EHDPIWVELRHAHIADASERLHEKMTGF 337 (655)
Q Consensus 259 DR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~~~~~~R~~~~~~v~~~l~~~~~~~ 337 (655)
||+.||+||||+|||||||+||++||++|+|.+.. .++.+.+.++++|+ .+|+||+..++.||+|+++.|+..+.+|
T Consensus 218 DR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~f 295 (549)
T KOG1299|consen 218 DRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEF 295 (549)
T ss_pred ecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 22333445677776 7999999999999999999999999999
Q ss_pred HHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCCCCCC-
Q 006227 338 VSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKD- 416 (655)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~~~~~- 416 (655)
+.+.+ . ..+..+++||+.||..+|+|+++...+++|+.+..++++.++.++|.+++|+||++++..+...+
T Consensus 296 q~k~~---~-----~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~ 367 (549)
T KOG1299|consen 296 QFKTK---T-----NSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADF 367 (549)
T ss_pred HHhhh---h-----chhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhH
Confidence 87432 1 23456999999999999999999999999999999999999999999999999999997654433
Q ss_pred ----------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHH---HcCCChhHHHHHHHHHHhcCccccccccCCCCcch
Q 006227 417 ----------DITRENKLRLLMIVASIYPEKFEGEKGLNLMK---LAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLK 483 (655)
Q Consensus 417 ----------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq---~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~ 483 (655)
+++..|++||+|||+|+|+ ..++.+..++++ .-|- ..-.++..|.++++...+... .|+..
T Consensus 368 ~~i~~LL~n~~vs~~d~lrLv~lYaLr~e-~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~d---lf~~~ 441 (549)
T KOG1299|consen 368 NDIKKLLQNEKVSEIDRLRLVALYALRYE-RHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLHVRQGD---LFGPN 441 (549)
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCccccccc---ccCcc
Confidence 6899999999999999995 456656665544 3343 234455666667766655321 23221
Q ss_pred --hhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcccccccCC
Q 006227 484 --FDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSR 561 (655)
Q Consensus 484 --f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~~~~ 561 (655)
+.+.+ +. -+..++.++.| .+|.|+++++++.+.+|++.+..||++.... .
T Consensus 442 ~~v~i~R--~~-~kglkgvENVy--tQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~--------------------s--- 493 (549)
T KOG1299|consen 442 DLVPIAR--RF-IKGLKGVENVY--TQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT--------------------S--- 493 (549)
T ss_pred hhHHHHH--HH-hhccCcchhhh--hccCHHHHHHHHHHHhcccccCCCccccccc--------------------c---
Confidence 22111 11 12224556665 6999999999999999999988899885310 0
Q ss_pred CCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHh-hCCCeEEEccCcccChhHHHHHH
Q 006227 562 RTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA-KLNREVVLGSSSLDDPPQFITKL 640 (655)
Q Consensus 562 r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~-~~~~~iiigsT~Ii~~~~fi~~l 640 (655)
..+++.|||||+||+||+|.+.++++.. ..|++|++|+|.|+|.+.|++++
T Consensus 494 ----------------------------~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~di 545 (549)
T KOG1299|consen 494 ----------------------------RDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGGTTVLNTKSFIDEI 545 (549)
T ss_pred ----------------------------cCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcceEEechHHHHHHH
Confidence 1257899999999999999999999975 46899999999999999999998
Q ss_pred hcc
Q 006227 641 KML 643 (655)
Q Consensus 641 ~~l 643 (655)
...
T Consensus 546 ~~a 548 (549)
T KOG1299|consen 546 MAA 548 (549)
T ss_pred hcc
Confidence 653
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-83 Score=696.07 Aligned_cols=554 Identities=25% Similarity=0.423 Sum_probs=442.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCC
Q 006227 16 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPT 95 (655)
Q Consensus 16 ~~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt 95 (655)
.++++.++.+++ +++..|.. ...|||||+|+.+..|||+|+++++|++|||+++++|+++|+|.++.+|||||+||
T Consensus 2 ~dl~e~q~~~i~-~~i~~v~~---~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt 77 (582)
T COG5158 2 MDLLELQKNKIL-DEIFLVQP---ANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPT 77 (582)
T ss_pred ccHHHHHHHHHH-HHHHhcCC---CcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCc
Confidence 368999999999 78877762 23599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCCC
Q 006227 96 KENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDE 175 (655)
Q Consensus 96 ~~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~~ 175 (655)
.+|+++|++|+.+..|.|..||+.|++.+...++|.+++ .+....|.+|.++++||+++|+|+|++++|..|...+.+.
T Consensus 78 ~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~ 156 (582)
T COG5158 78 KENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPS 156 (582)
T ss_pred hHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCC
Confidence 999999999998656899999999999999988888886 6788889999999999999999999999999998888754
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCCC---CCCC
Q 006227 176 ESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSET 252 (655)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~~ 252 (655)
. ...+-.||+||+++|.++|.+|.|||.++. .|.++|+++-..+........++. .+.+
T Consensus 157 ~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~ 218 (582)
T COG5158 157 T-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLR 218 (582)
T ss_pred c-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 4 234448999999999999999999998763 344555554444432222222221 1247
Q ss_pred eeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHHH
Q 006227 253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHE 332 (655)
Q Consensus 253 ~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~ 332 (655)
++|||+||+.|++|||+|+||||||+||++||++|.|+++.....| +++|...++.+|+||.++||+||++|++.|.+
T Consensus 219 ~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~ 296 (582)
T COG5158 219 PILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKK 296 (582)
T ss_pred ceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHH
Confidence 9999999999999999999999999999999999999998654544 55666677789999999999999999999999
Q ss_pred HHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCC
Q 006227 333 KMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA 412 (655)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~ 412 (655)
.+++|+.+++. .. .....++.||++||.+||++++.++.+.+|++||++|+++++.++|++++++||++.++.+
T Consensus 297 ~~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~ 370 (582)
T COG5158 297 LAKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGND 370 (582)
T ss_pred HHHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999987643 22 1234699999999999999999999999999999999999999999999999999999875
Q ss_pred CCCC---------CCCch-hhHHHHHHHHHhCCCCC-CchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccC----
Q 006227 413 GFKD---------DITRE-NKLRLLMIVASIYPEKF-EGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTI---- 477 (655)
Q Consensus 413 ~~~~---------~~~~~-dkLRLl~L~~l~~~~g~-~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~---- 477 (655)
.... ....+ +||||+|||+|+. +|+ ...+..+++..-|++.+++..+.+|..+|....+.....
T Consensus 371 ~~~~i~Dli~~l~~~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~ 449 (582)
T COG5158 371 VKSDISDLIELLESGVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKR 449 (582)
T ss_pred chhhHHHHHHHHhcCchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 4211 23333 5999999999997 453 333455666677888899999999999987744321100
Q ss_pred C------CCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 006227 478 G------AFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNE 551 (655)
Q Consensus 478 ~------~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~ 551 (655)
+ .|...|...+ ..+...+..++|++|.|..+++...+..+.+.+..++.+..
T Consensus 450 g~~d~l~~~~n~y~~s~------~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~---------------- 507 (582)
T COG5158 450 GDKDSLFQWFNTYSLSR------EHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ---------------- 507 (582)
T ss_pred CCcccccCccccccccc------ccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhcc----------------
Confidence 1 1112222111 11235667888999999999999999988764433322210
Q ss_pred CcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC-CeEEEccCcc
Q 006227 552 VPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSL 630 (655)
Q Consensus 552 ~~~~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~~-~~iiigsT~I 630 (655)
+.+..+ +.| +.+.. ...++++++|||+||+||.|++++++++.+.+ ++|++|||.|
T Consensus 508 -----s~~~~~-~k~-~~~~~----------------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst~i 564 (582)
T COG5158 508 -----SLRLSR-PKG-RSRSN----------------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEI 564 (582)
T ss_pred -----ceeecc-ccc-ccccc----------------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCCce
Confidence 111111 112 11110 01268999999999999999999999999888 9999999999
Q ss_pred cChhHHHHHHhccCCC
Q 006227 631 DDPPQFITKLKMLTAH 646 (655)
Q Consensus 631 i~~~~fi~~l~~l~~~ 646 (655)
+||.+||+++..++..
T Consensus 565 ltp~e~l~~v~~~~~~ 580 (582)
T COG5158 565 LTPAEFLDEVKRLGGS 580 (582)
T ss_pred ecHHHHHHHHHHhccc
Confidence 9999999999988643
No 5
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-84 Score=667.57 Aligned_cols=561 Identities=23% Similarity=0.382 Sum_probs=442.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhc----CCC-CCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeE
Q 006227 14 DYKNFKQITRERLLYEMLRSAK----TGK-SKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEA 88 (655)
Q Consensus 14 ~~~~l~~~~~~~l~~~~L~~~~----~~~-~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~a 88 (655)
-..+||+.|-..|. .||+.-. .+. .++.|||||+|..++.|||++++++||++||||++..|.+.|+|+|+++|
T Consensus 8 ~~~slRe~Qi~al~-~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPA 86 (621)
T KOG1301|consen 8 AAASLRERQIVALK-KMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPA 86 (621)
T ss_pred hhhhHHHHHHHHHH-HHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCe
Confidence 35789999999998 8986432 122 26789999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecceeeccCCceeecCc
Q 006227 89 IYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAVDSQGFVTDDE 165 (655)
Q Consensus 89 Iyfi~Pt~~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~---~~~~~~~i~~i~e~~~dfipld~dlfsl~~~ 165 (655)
||||+||.||+++|++|+++ .+|.+||++|++++|+..+|.||. +.|...+|++|++.|+|||.+|+|+|+|.++
T Consensus 87 VYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~ 164 (621)
T KOG1301|consen 87 VYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQ 164 (621)
T ss_pred EEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhccc
Confidence 99999999999999999975 699999999999999999999985 5788999999999999999999999999999
Q ss_pred hhhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcC
Q 006227 166 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 245 (655)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~ 245 (655)
++|..+..++..+...+..+++||+||+++|.++|.+|.|||-.+. +++++|++|-.++++.+-..++...
T Consensus 165 ~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~---------aAEmvA~kL~qKLRd~l~d~k~~lf 235 (621)
T KOG1301|consen 165 NSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG---------AAEMVARKLDQKLRDNLRDTKNNLF 235 (621)
T ss_pred ccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC---------HHHHHHHHHHHHHHHHhHhhcccce
Confidence 9998888777777778899999999999999999999999993221 2478899999988888764443221
Q ss_pred ----CCCCCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhc
Q 006227 246 ----NFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 321 (655)
Q Consensus 246 ----~~~~~~~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~ 321 (655)
.+-.-++|+|+|+||++|++||+.|.||||||+||+|+++.|+|+++.+. ++..+|.+.|+.+|+||..+.+.
T Consensus 236 t~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~~ 312 (621)
T KOG1301|consen 236 TMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKGS 312 (621)
T ss_pred eccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCCC
Confidence 11123589999999999999999999999999999999999999998743 23456789999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHhhhhc--CC---C---CCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHH
Q 006227 322 HIADASERLHEKMTGFVSKNKAAQIQN--GS---R---DGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 393 (655)
Q Consensus 322 ~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~---~---~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~ 393 (655)
.|++|++.|.+++.+|+.+. +++++ |. . .+..++...++++|.+||++.++++.+++|+|||+++++.|+
T Consensus 313 pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~Ik 390 (621)
T KOG1301|consen 313 PFPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIK 390 (621)
T ss_pred CCchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 34542 11 0 111234459999999999999999999999999999999999
Q ss_pred HhhHhHHHHHHHhhhcCCCCC---------CCCCCchhhHHHHHHHHHhCCCCCCchHH---HHHHHHcCCChhHHHHHH
Q 006227 394 ETGLRELGQLEQDLVFGDAGF---------KDDITRENKLRLLMIVASIYPEKFEGEKG---LNLMKLAKLTADDMTAVN 461 (655)
Q Consensus 394 ~~~l~~~~~lEq~i~~~~~~~---------~~~~~~~dkLRLl~L~~l~~~~g~~~~~~---~~llq~~g~~~~~~~~l~ 461 (655)
.|+|+.++++|+++.++. .+ +...+++||||++++|.++.. -.+..+. +..++..|.+...+..+.
T Consensus 391 eR~lD~ff~~E~~~~~~~-l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~yvk 468 (621)
T KOG1301|consen 391 ERKLDDFFEVEKKIMSTT-LDRSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALKYVK 468 (621)
T ss_pred HhhhhHHHHHhccccccc-ccHHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999999999999998832 11 226899999999999999974 3444444 456778898777777777
Q ss_pred HHHHhcCccccccc--c-CCCCc----------chhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCC--C
Q 006227 462 NMRLLGGALESKKS--T-IGAFS----------LKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNEL--S 526 (655)
Q Consensus 462 ~L~~lg~~~~~~~~--~-~~~~~----------~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l--~ 526 (655)
++..+.-....... + ...+. ..|-+..-+|++.++. -.| +.++||.+..++- .
T Consensus 469 r~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q-----------~lP-vT~iveal~~~~sn~e 536 (621)
T KOG1301|consen 469 RLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQ-----------NLP-VTRIVEALMDPKSNPE 536 (621)
T ss_pred HHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCcccc-----------cCc-HHHHHHHhhCCCCCcc
Confidence 76554322211100 0 00110 1111112233333221 223 7889999997664 2
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCH
Q 006227 527 KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTR 606 (655)
Q Consensus 527 ~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy 606 (655)
.++|.|++ |+.. .|.. .....+ ..+.++.|||||||.+|
T Consensus 537 tddYl~~D-Pk~~-k~~~-----------~~~~~~----------------------------r~~f~eaIVFvVGGGNY 575 (621)
T KOG1301|consen 537 TDDYLYFD-PKLS-KGGS-----------SSLPIK----------------------------RQPFQEAIVFVVGGGNY 575 (621)
T ss_pred ccceEeec-cccc-cCCC-----------cccccc----------------------------ccchhheEEEEEcCcCe
Confidence 45688884 4421 1100 000000 12578999999999999
Q ss_pred HHHHHHHHHHhhC--CCeEEEccCcccChhHHHHHHhccCCC
Q 006227 607 SELRVCHKLTAKL--NREVVLGSSSLDDPPQFITKLKMLTAH 646 (655)
Q Consensus 607 ~Ei~al~~l~~~~--~~~iiigsT~Ii~~~~fi~~l~~l~~~ 646 (655)
-|+..|.+|.++. .++|++|+|+|+||.+|++++..||..
T Consensus 576 iEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~ 617 (621)
T KOG1301|consen 576 IEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLK 617 (621)
T ss_pred eehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhccc
Confidence 9999999998753 489999999999999999999998854
No 6
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-82 Score=676.29 Aligned_cols=553 Identities=19% Similarity=0.309 Sum_probs=450.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCC-CCCeEE
Q 006227 11 YGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPL-PSMEAI 89 (655)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~-~~~~aI 89 (655)
...++..+++.+++.|+ ++|++++ | .|+||||+.++++|+++.+++.|.+|||.....++.++.|. .....|
T Consensus 10 ~~~~l~~lq~~a~~eL~-~lLds~p-G-----~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~v 82 (600)
T KOG1302|consen 10 ADLNLQGLQEVARRELI-SLLDSLP-G-----KKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVV 82 (600)
T ss_pred ccchHHHHHHHHHHHHH-HHHhcCC-C-----ceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEE
Confidence 45789999999999999 9999998 5 99999999999999999999999999999888888765333 345799
Q ss_pred EEEcCCHHHHHHHHHHhcc--CCCCcceEEEEecCCCCHH--HHHHHHhCCCcccccceeEEEecceeeccCCceeecCc
Q 006227 90 YFIQPTKENVVAFLSDMSG--KSPLYKKAFVFFSSPISRE--LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 165 (655)
Q Consensus 90 yfi~Pt~~~i~~I~~d~~~--~~~~y~~~~i~F~~~~~~~--~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~ 165 (655)
||++|+.++++.|++++++ +...-+.||++| +|+. +|+.+.++.++++.+ .+.|++++++|+|.|++||+.|
T Consensus 83 y~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~ 158 (600)
T KOG1302|consen 83 YFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELP 158 (600)
T ss_pred EEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccch
Confidence 9999999999999999974 334678999999 5543 688888889999877 6999999999999999999999
Q ss_pred hhhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcC
Q 006227 166 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 245 (655)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~ 245 (655)
++|.++|.+++ .+.+..+|++|.+++.++|.+|.|+..|+ .|+++++++.+..++..
T Consensus 159 ~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e~~ 215 (600)
T KOG1302|consen 159 NSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLEREEA 215 (600)
T ss_pred HHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhccc
Confidence 99999999887 67899999999999999999999999888 45566666655544321
Q ss_pred --CCC-CCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCC----C----CCCcceeEecCCCchH
Q 006227 246 --NFP-MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKT----D----GPPEKKEVLLEEHDPI 314 (655)
Q Consensus 246 --~~~-~~~~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~----g----~~~~~k~~~l~~~D~~ 314 (655)
+.+ ..++++||++||++|++||||||+||+|||||+|||++|.|+++.+..+ | +..+++.+.++..|++
T Consensus 216 t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deI 295 (600)
T KOG1302|consen 216 TENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEI 295 (600)
T ss_pred cccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHH
Confidence 122 2457899999999999999999999999999999999999999864321 1 2234577788899999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHH
Q 006227 315 WVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRE 394 (655)
Q Consensus 315 ~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~ 394 (655)
|+++|++||+.|++.+++++++++..++. +.+..+++||++||++||.++++++.++.|+++|+.+++.++.
T Consensus 296 y~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~ 367 (600)
T KOG1302|consen 296 YAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKN 367 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999986642 3567899999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHhhhcCCCCCCC----------CCCchhhHHHHHHHHHhCCCCCCchHH----HHHHHHcCCChhHHHHH
Q 006227 395 TGLRELGQLEQDLVFGDAGFKD----------DITRENKLRLLMIVASIYPEKFEGEKG----LNLMKLAKLTADDMTAV 460 (655)
Q Consensus 395 ~~l~~~~~lEq~i~~~~~~~~~----------~~~~~dkLRLl~L~~l~~~~g~~~~~~----~~llq~~g~~~~~~~~l 460 (655)
..|.+++.+||+++.|.+.+++ +.+...+|||+||.|++. +|++++++ +.++|.||+ +++.+|
T Consensus 368 ~~f~~~l~lE~ell~~~d~~k~~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~tl 444 (600)
T KOG1302|consen 368 EDFRKLLKLEHELLEGNDSDKDFDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLTL 444 (600)
T ss_pred HHHHHHHHHHHHHHhccCcccchHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHHH
Confidence 9999999999999999988776 789999999999999987 69988653 568999999 999999
Q ss_pred HHHHHhcCccccccccCC--CCc-chhhh-hhhhhhcccC---CCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcc
Q 006227 461 NNMRLLGGALESKKSTIG--AFS-LKFDI-HKKKRAARKD---RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCM 533 (655)
Q Consensus 461 ~~L~~lg~~~~~~~~~~~--~~~-~~f~~-~k~~~~~~~~---~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i 533 (655)
.||+++|++..+...+.. ..+ ..|+. .+..+++..+ .+|.|++|+||||+|+++||+|.+++..+-++.|..+
T Consensus 445 ~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i 524 (600)
T KOG1302|consen 445 QNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKI 524 (600)
T ss_pred HHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHH
Confidence 999999999876422100 000 11221 2344454433 3699999999999999999999999985444455333
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHH
Q 006227 534 NDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCH 613 (655)
Q Consensus 534 ~~~~~~~~g~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~ 613 (655)
... +|..... .+|.... ..+... . +...+.++|||+||+||+||||+|
T Consensus 525 ~~l----~g~~~e~----------------~~~~~~~-----~~~~~~----~---~g~~R~~lVff~GG~T~~EIAalr 572 (600)
T KOG1302|consen 525 RNL----PGPHFEE----------------VTWTPSD-----IASKNN----S---PGALRVTLVFFLGGCTYAEIAALR 572 (600)
T ss_pred ccC----CCCchhh----------------cccChhh-----hccccc----C---CCCcceEEEEEECCccHHHHHHHH
Confidence 221 1211100 0111000 000000 0 114789999999999999999999
Q ss_pred HHHhhCCCeEEEccCcccChhHHHHHH
Q 006227 614 KLTAKLNREVVLGSSSLDDPPQFITKL 640 (655)
Q Consensus 614 ~l~~~~~~~iiigsT~Ii~~~~fi~~l 640 (655)
+|++..|++|+|+||+++|+.++++.+
T Consensus 573 ~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 573 FLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHhhcCceEEEEeccccchHHHHHhh
Confidence 999999999999999999999999976
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=53.07 E-value=18 Score=35.74 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=34.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
+.|.+.||+|-..++.+.+ .|.++++.++.|++.++....++++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999977766665 5899999999999877766555544
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=47.84 E-value=23 Score=35.36 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
.+.|.+.||+|-..++.+.+ .|.++++.++.|+..+++-+.++.+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 47788999999777766655 4899999999999766655555444
No 9
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=46.30 E-value=22 Score=33.91 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=33.7
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
.+-|++.||+|-..+..+.. .|.+.+..++.|....+....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35689999999866665554 4899999999998766666666554
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=45.81 E-value=21 Score=35.69 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=34.0
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
+-|.++||+|-.-++.+.+ .|.++++.++.|+..++.-+.++.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----AGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----cCCCEEEEChHHhCCCCHHHHHHHH
Confidence 4589999999887777765 4889999999999777765555544
No 11
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.71 E-value=33 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=32.2
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
+-|++.||+|-..++.+.. .|.+.+++++.|.+.++..+.+..+
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~~l 204 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAARAL 204 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHHHH
Confidence 6789999999766665554 4899999999998765554444433
No 12
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.20 E-value=49 Score=32.17 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=32.8
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
+-|++.||+|-.-++.+. +.|.+.++.++.|+++.+.-..++++
T Consensus 166 ~~i~v~GGI~~env~~l~----~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELA----EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHHHHHHH----HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 557899999965544433 35899999999999988877666543
No 13
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=32.25 E-value=50 Score=31.87 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.8
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 641 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~ 641 (655)
+-|+.+||+|-..++.+.. .|.+.+..++.|.+.++-...+.
T Consensus 153 ~pv~a~GGI~~~~~~~~~~----~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVLA----AGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEhHHhhCCCCHHHHHH
Confidence 4489999999766665543 58999999999998776555544
No 14
>PF14071 YlbD_coat: Putative coat protein
Probab=32.12 E-value=40 Score=30.19 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=12.4
Q ss_pred EecCCCchHHHHhh
Q 006227 306 VLLEEHDPIWVELR 319 (655)
Q Consensus 306 ~~l~~~D~~~~~~R 319 (655)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 46789999999999
No 15
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.71 E-value=72 Score=30.94 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=32.9
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 596 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 596 viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
+-|++.||+|-.-++.+.. .|.+.++.++.|++..+....++.+
T Consensus 167 ~pi~v~GGI~~env~~~~~----~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 167 LLIEVDGGINLETIPLLAE----AGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred eEEEEECCCCHHHHHHHHH----cCCCEEEECHHHhCCCCHHHHHHHh
Confidence 5678999999755544443 4889999999999888776666543
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.58 E-value=57 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=33.9
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
.+.+-|-||||-..++.+.+ .|.+++|.|+.|+..++.-+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~~i 217 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIELL 217 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHHHH
Confidence 46688999999987776665 4899999999998766655554433
No 17
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.41 E-value=84 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=35.3
Q ss_pred CCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 593 GQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 593 ~~~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
...+.+-|=|||+-.-++.+.+ .|.+++|.|+.|...++.-+.++.+
T Consensus 169 ~~~~~IeVDGGI~~eti~~l~~----aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 169 GKPIRLEIDGGVKADNIGAIAA----AGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred CCCeeEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 3358899999999887776665 4899999999999665555544444
No 18
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.66 E-value=74 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 642 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~ 642 (655)
.+.|.+.||+|..-+..+. +.|.+.++.++.|.+.++.-+.++.
T Consensus 158 ~~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~~~ 201 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAARQ 201 (206)
T ss_pred CCcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHHHH
Confidence 3456779999988776554 3588988888889976555444443
No 19
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.55 E-value=90 Score=30.14 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006227 594 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 642 (655)
Q Consensus 594 ~~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~ 642 (655)
..+.|.+.||++..- +.++. +.|.+.++.++.|...++.-+.+++
T Consensus 157 ~~~~i~~~GGI~~~~---i~~~~-~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 157 LGVKVAVAGGITPDT---LPEFK-KAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred cCCCEEEECCcCHHH---HHHHH-hcCCCEEEEeehhcCCCCHHHHHhc
Confidence 357789999999543 33333 3589999999999987776555543
No 20
>PRK10039 hypothetical protein; Provisional
Probab=23.53 E-value=1.5e+02 Score=26.70 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHHHhhCC----CeEEE-ccCcccChhHHHHHHh
Q 006227 602 GGTTRSELRVCHKLTAKLN----REVVL-GSSSLDDPPQFITKLK 641 (655)
Q Consensus 602 GGvTy~Ei~al~~l~~~~~----~~iii-gsT~Ii~~~~fi~~l~ 641 (655)
||.|--|.|+++|+....+ +.+++ -.+.-++-++.++.+.
T Consensus 81 GGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 81 GGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 9999999999999976432 23444 4444566666666654
No 21
>PRK08005 epimerase; Validated
Probab=23.30 E-value=66 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=34.6
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 597 FVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 597 iVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
-+-|=|||+-.-+..+.+ .|.+++|+|+.|.+.+++-+.++.+
T Consensus 165 ~I~VDGGI~~~~i~~l~~----aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 165 ECWADGGITLRAARLLAA----AGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred CEEEECCCCHHHHHHHHH----CCCCEEEEChHhhCCCCHHHHHHHH
Confidence 389999999888887766 4899999999999776666666554
No 22
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=20.86 E-value=86 Score=34.15 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=32.2
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006227 594 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 642 (655)
Q Consensus 594 ~~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~ 642 (655)
..+.|-+.||||..-+..+. +.|.+++|.|+.|...++..+.++.
T Consensus 329 ~~~~I~VdGGI~~eti~~l~----~aGADivVVGsaIf~a~Dp~~aak~ 373 (391)
T PRK13307 329 GKILVAVAGGVRVENVEEAL----KAGADILVVGRAITKSKDVRRAAED 373 (391)
T ss_pred CCCcEEEECCcCHHHHHHHH----HcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 45789999999966654444 3589999999999866555444443
No 23
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=20.70 E-value=2e+02 Score=24.43 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcC--CCHHHHHHHHH-HHhh--CCCeEEEccC
Q 006227 592 MGQRIFVFIVGG--TTRSELRVCHK-LTAK--LNREVVLGSS 628 (655)
Q Consensus 592 ~~~~viVfviGG--vTy~Ei~al~~-l~~~--~~~~iiigsT 628 (655)
+-+.++|.|.|| +|+.|+..+-+ +.+. .+.+|+.|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 467999999997 78999987754 4554 3578988865
Done!