Query 006227
Match_columns 655
No_of_seqs 166 out of 970
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 19:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 1E-106 3E-111 914.6 48.4 565 16-647 4-589 (594)
2 3puk_A Syntaxin-binding protei 100.0 2E-105 8E-110 903.2 43.4 561 15-651 7-590 (592)
3 3c98_A Syntaxin-binding protei 100.0 3E-104 1E-108 903.7 48.4 566 15-647 15-601 (606)
4 2xhe_A UNC18; exocytosis, exoc 100.0 3E-103 1E-107 899.0 54.0 593 17-647 3-619 (650)
5 1epu_A S-SEC1; parallel beta-s 100.0 3E-103 9E-108 894.0 49.9 567 17-645 2-590 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 4.2E-92 1.4E-96 809.0 39.1 573 15-649 16-667 (671)
7 1y9j_A SEC1 family domain cont 100.0 2.4E-29 8.2E-34 232.7 10.6 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 37.9 63 0.0022 21.4 4.6 32 356-387 3-34 (46)
9 1tqx_A D-ribulose-5-phosphate 31.3 31 0.0011 33.1 3.5 43 595-641 173-215 (227)
10 1h1y_A D-ribulose-5-phosphate 24.3 31 0.001 32.9 2.1 42 595-640 173-214 (228)
11 1y0e_A Putative N-acetylmannos 22.9 70 0.0024 30.0 4.3 45 595-643 175-220 (223)
12 3cu2_A Ribulose-5-phosphate 3- 22.5 55 0.0019 31.6 3.4 45 595-642 187-231 (237)
13 3ctl_A D-allulose-6-phosphate 21.6 54 0.0018 31.5 3.2 43 595-641 167-214 (231)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1e-106 Score=914.59 Aligned_cols=565 Identities=30% Similarity=0.566 Sum_probs=468.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCC
Q 006227 16 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPT 95 (655)
Q Consensus 16 ~~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt 95 (655)
-+||+++|++|+++||+++++ .++|||||+|+.+++|||++|++++|+++||++|++|+.+|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 469999999999889999852 34699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCC
Q 006227 96 KENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGD 174 (655)
Q Consensus 96 ~~~i~~I~~d~~~-~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~ 174 (655)
.+||++|++||++ ..|+|++|||||++.+|+.+++.||+ .++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999974 13799999999999999999999997 578999999999999999999999999999999999985
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006227 175 EESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSE 251 (655)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~ 251 (655)
+.+ ......++.+|++|+++|.++|.+|.|||+|+. ..|+++|+.+++.|..+...+..++ ...
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 432 134678999999999999999999999999874 2477889999988888765444332 234
Q ss_pred CeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHH
Q 006227 252 TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLH 331 (655)
Q Consensus 252 ~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~ 331 (655)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|+||.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 1234568899999999999999999999999999
Q ss_pred HHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCC
Q 006227 332 EKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGD 411 (655)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~ 411 (655)
+++++|+++++.. ..+..+++||++||++||+|+++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999998865321 1234578899999999999999999999999999999999987 8999999999999997
Q ss_pred CCCC----C------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccc
Q 006227 412 AGFK----D------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKS 475 (655)
Q Consensus 412 ~~~~----~------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 475 (655)
+.+. . .++.+|||||+|||+|++ +|++++++.++++++|++.+++.++.||+++|+...++..
T Consensus 377 d~~~~~~k~~~~~i~~lL~~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~ 455 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST 455 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG
T ss_pred CcccchhHHHHHHHHHHHhCCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc
Confidence 6431 1 678999999999999997 5899889999999999999999999999999976544211
Q ss_pred cCCCCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCccc
Q 006227 476 TIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAA 555 (655)
Q Consensus 476 ~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~ 555 (655)
. .|.+.+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+
T Consensus 456 -------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~------------- 511 (594)
T 1dn1_A 456 -------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------- 511 (594)
T ss_dssp -------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-------------------
T ss_pred -------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc-------------
Confidence 0 11122333333 67899999999999999999999999999999999765421100
Q ss_pred ccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC-CCeEEEccCcccChh
Q 006227 556 HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDPP 634 (655)
Q Consensus 556 ~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~-~~~iiigsT~Ii~~~ 634 (655)
.+..+.|+++|++.++..+ ..+++|+||||+||+||+|+|++|++++.. |++|+||||+|+||+
T Consensus 512 ~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~ 576 (594)
T 1dn1_A 512 TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576 (594)
T ss_dssp -----------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHH
T ss_pred ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHH
Confidence 0112345578986543211 125789999999999999999999999875 589999999999999
Q ss_pred HHHHHHhccCCCC
Q 006227 635 QFITKLKMLTAHE 647 (655)
Q Consensus 635 ~fi~~l~~l~~~~ 647 (655)
+|+++|..|+++.
T Consensus 577 ~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 577 KLLDTLKKLNKTD 589 (594)
T ss_dssp HHHHHHTTTTSCS
T ss_pred HHHHHHHHhCCCc
Confidence 9999999998654
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=2.3e-105 Score=903.22 Aligned_cols=561 Identities=29% Similarity=0.498 Sum_probs=461.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcC
Q 006227 15 YKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQP 94 (655)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~P 94 (655)
+-+||+++|++|+++||+++++ .++|||||+|+.+++|||++|++++|+++||++++.|+.+|+|+|+++|||||+|
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISP 83 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeC
Confidence 3579999999999779999863 3579999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcC
Q 006227 95 TKENVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG 173 (655)
Q Consensus 95 t~~~i~~I~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~ 173 (655)
|.+||++|++||+.. .++|++|||||++.+|+.+++.| + +++.+.|+++.|+++||+|+|+|+|||++|++|..+|.
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~ 161 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYS 161 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcC
Confidence 999999999999741 35899999999999999999999 4 67899999999999999999999999999999999999
Q ss_pred CCcC-hhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHH-hhhhcCCCCC-C
Q 006227 174 DEES-SQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMK-YKQTIQNFPM-S 250 (655)
Q Consensus 174 ~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~-~~~~~~~~~~-~ 250 (655)
++.+ .......++.+|++|+++|.++|.+|.|||+|++.. -|+++|..+++.|.+ +....+.++. .
T Consensus 162 ~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~-----------~a~~lA~~l~~~l~~~~~~~~~~~~~~~ 230 (592)
T 3puk_A 162 PDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLD-----------NASKLAQLVEKKLEDYYKIDEKGLIKGK 230 (592)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSS-----------HHHHHHHHHHHHHHHSSSSCSSCSCCSC
T ss_pred CcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCC
Confidence 6543 234578999999999999999999999999987421 256788888888876 3332233322 4
Q ss_pred CCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHH
Q 006227 251 ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERL 330 (655)
Q Consensus 251 ~~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (655)
++++|||+||++|++|||+||||||||+||+|||++|+|+++. .| ++|++.|+++|+||.++||+||++|++.|
T Consensus 231 ~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 231 TQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp CSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 12 45789999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcC
Q 006227 331 HEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG 410 (655)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~ 410 (655)
.+++++|+++++. ..+..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|
T Consensus 305 ~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g 375 (592)
T 3puk_A 305 PKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALG 375 (592)
T ss_dssp CSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 9999999876532 1234688999999999999999999999999999999999987 899999999999998
Q ss_pred CCCCC----C------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccc
Q 006227 411 DAGFK----D------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKK 474 (655)
Q Consensus 411 ~~~~~----~------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~ 474 (655)
.+.+. . .++.+|||||+|||+|++ +|++++++.++++++|++. ++.++.||+.+|+...+..
T Consensus 376 ~d~~~~~~k~~~~~i~~~L~~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~~ 453 (592)
T 3puk_A 376 TDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPPS 453 (592)
T ss_dssp SCTTCCSCSCCHHHHTTTTTSCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSSB
T ss_pred CCccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccCc
Confidence 75431 1 578899999999999998 6899889999999999986 8999999999997654321
Q ss_pred ccCCCCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q 006227 475 STIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPA 554 (655)
Q Consensus 475 ~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~ 554 (655)
. ..+..++. .+.++.|.+|||+|++++++|++++|+|+++.|||+.+++....+
T Consensus 454 -----~--------~~~~~rk~-~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~------------ 507 (592)
T 3puk_A 454 -----Q--------QAKPLRKD-RSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG------------ 507 (592)
T ss_dssp -----S--------SCCCCCCC-CCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC----------------------
T ss_pred -----c--------ccCccccc-CCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC------------
Confidence 0 11122233 367899999999999999999999999999999999765421100
Q ss_pred cccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCC-CeEEEccCcccCh
Q 006227 555 AHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDDP 633 (655)
Q Consensus 555 ~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~~-~~iiigsT~Ii~~ 633 (655)
.+..+.|.++| +.....+ ..+++++||||+||+||+|+|++|++++..+ ++|+||||+|+||
T Consensus 508 -~~~~s~r~~~w-~~~~~~~---------------~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np 570 (592)
T 3puk_A 508 -SGAVSARQKPR-TNYLELD---------------RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTP 570 (592)
T ss_dssp -----------C-CCCCCCC---------------CSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECH
T ss_pred -Ccccccccccc-ccCcccc---------------ccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCH
Confidence 00113445688 4322110 1357999999999999999999999998775 8999999999999
Q ss_pred hHHHHHHhccCC--CCCCcc
Q 006227 634 PQFITKLKMLTA--HELSLD 651 (655)
Q Consensus 634 ~~fi~~l~~l~~--~~~~~~ 651 (655)
++|+++|..|++ ..|+|.
T Consensus 571 ~~fl~~l~~l~~~~~~~~~~ 590 (592)
T 3puk_A 571 RKLLDDIKMLNKSKDKVSFK 590 (592)
T ss_dssp HHHHHHHSSTTSCCC-----
T ss_pred HHHHHHHHHhCCcccccCCC
Confidence 999999999974 444444
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=2.9e-104 Score=903.70 Aligned_cols=566 Identities=30% Similarity=0.555 Sum_probs=466.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcC
Q 006227 15 YKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQP 94 (655)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~P 94 (655)
|.+||++++++++++|++++++ ++.|||||+|+.|++|||++|+++||+++||++|++|+++|+|+|+++|||||+|
T Consensus 15 p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 15 PIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITP 91 (606)
T ss_dssp -CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcC
Confidence 5789999999999999999973 3469999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcC
Q 006227 95 TKENVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG 173 (655)
Q Consensus 95 t~~~i~~I~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~ 173 (655)
|.+||++|++||++. .++|++|||||++++|+.+++.||+ .+..+.|.+|.|+++||+|+|+|+|||++|++|..+|.
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~ 170 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS 170 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHC
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcC
Confidence 999999999999741 3589999999999999999999997 56789999999999999999999999999999999998
Q ss_pred CCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCC---CCC
Q 006227 174 DEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF---PMS 250 (655)
Q Consensus 174 ~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~---~~~ 250 (655)
++.. ......++++|++|+++|.++|.+|.|||+|++ ..|+.+|+.+++.++.+.++.+.+ +..
T Consensus 171 ~~~~-~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~ 237 (606)
T 3c98_A 171 PHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDK 237 (606)
T ss_dssp GGGT-TSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTT
T ss_pred Cccc-ccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 5432 123678999999999999999999999999875 246678888888888877665443 334
Q ss_pred CCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHH
Q 006227 251 ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERL 330 (655)
Q Consensus 251 ~~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (655)
++++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..+.|++.++++|+||.++||+||++|++.|
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l 315 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEV 315 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEES--SSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCC--CCCccceEeecCCCchhHHHHhccCHHHHHHHH
Confidence 589999999999999999999999999999999999999998632 223456789999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcC
Q 006227 331 HEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG 410 (655)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~ 410 (655)
.+++++|+++++. ..++..+++||++||++||+|+++++.+++|++||++|++.++ ++|++++++||+|++|
T Consensus 316 ~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 316 TRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 9999999876532 1223457889999999999999999999999999999999995 6899999999999998
Q ss_pred CCCCCC----------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccc
Q 006227 411 DAGFKD----------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKK 474 (655)
Q Consensus 411 ~~~~~~----------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~ 474 (655)
.+.+.. .++..|||||+|||++++ +|++++++.++++..|++.+++.++.+|+.+|+...+..
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~~ 466 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 466 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHTCTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CCcchhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 765422 578899999999999998 589988899999999999999999999999997654431
Q ss_pred ccCCCCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcc
Q 006227 475 STIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPA 554 (655)
Q Consensus 475 ~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~ 554 (655)
.. ..+ .....+. .+.+..|+||||+|+++++++.++++++++..||++..+.....+
T Consensus 467 ~~-~~~---------~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~------------ 523 (606)
T 3c98_A 467 TL-RRR---------SKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------ 523 (606)
T ss_dssp TT-TCC---------CCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred cc-ccc---------cchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc------------
Confidence 10 000 0111111 356778999999999999999999999999999999754321110
Q ss_pred cccccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC-CCeEEEccCcccCh
Q 006227 555 AHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDP 633 (655)
Q Consensus 555 ~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~-~~~iiigsT~Ii~~ 633 (655)
....+.+.+.|.++.... ....++++||||||||||+|+|++|+++++. +++|+||||+|+||
T Consensus 524 -~~~~~~~~~~~~~~~~~~---------------~~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln~ 587 (606)
T 3c98_A 524 -TTAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTP 587 (606)
T ss_dssp ------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECH
T ss_pred -ccccccccCCccccCCCC---------------CCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeCH
Confidence 011122335666543221 1135789999999999999999999998765 57999999999999
Q ss_pred hHHHHHHhccCCCC
Q 006227 634 PQFITKLKMLTAHE 647 (655)
Q Consensus 634 ~~fi~~l~~l~~~~ 647 (655)
++||++|+.|++++
T Consensus 588 ~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 588 QKLLDTLKKLNKTD 601 (606)
T ss_dssp HHHHHHHTTTTSCC
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999999765
No 4
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=3.3e-103 Score=898.97 Aligned_cols=593 Identities=24% Similarity=0.451 Sum_probs=465.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCCH
Q 006227 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (655)
Q Consensus 17 ~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt~ 96 (655)
+||+.+|++|++++| ++++ .++|||||+|+.++++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~ 78 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVAD---GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTE 78 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCC---CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCH
T ss_pred cHHHHHHHHHHHHHh-cccc---CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCH
Confidence 589999999999999 8852 236999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCCCc
Q 006227 97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE 176 (655)
Q Consensus 97 ~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~~~ 176 (655)
+||++|++||+...|+|+.|||||++++|+.++|++|+ .++.+.|.++.|+++||+|+|+|+|||++|++|..+|.+..
T Consensus 79 ~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 79 ENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS-AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHH-SGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHh-cchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 99999999998544899999999999999999999997 45889998999999999999999999999999999996422
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCC---CCCCCe
Q 006227 177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF---PMSETC 253 (655)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~---~~~~~~ 253 (655)
....++.+|++|+++|.++|.+|.|||+|+++ ..|+++|..+++.|.. ..+...+ +...++
T Consensus 158 ----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~-----------~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~ 221 (650)
T 2xhe_A 158 ----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST-----------PGTERMAMQLQKEIDM-SVSQGLINAREGKLKS 221 (650)
T ss_dssp ----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCC-----------HHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCC
T ss_pred ----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCc-----------hHHHHHHHHHHHHHHh-hccCCcccCCCCCCCC
Confidence 14679999999999999999999999998741 2477788888776664 2222211 334589
Q ss_pred eEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHHHH
Q 006227 254 ELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 333 (655)
Q Consensus 254 ~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~ 333 (655)
+|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..++|++.|+++|+||.++||+||++|++.|.++
T Consensus 222 ~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~ 300 (650)
T 2xhe_A 222 QFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSS 300 (650)
T ss_dssp EEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986432 234567889999999999999999999999999999
Q ss_pred HHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCCC
Q 006227 334 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG 413 (655)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~~ 413 (655)
+++|+++++..+- .+...++..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|.+.
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~ 378 (650)
T 2xhe_A 301 FDEFCVSARRLQG-LRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQ 378 (650)
T ss_dssp HHHHHHHHHHTTT-CCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHhhhhcc-ccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcc
Confidence 9999987653210 00011245689999999999999999999999999999999999999 999999999999999764
Q ss_pred C----CC------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccC
Q 006227 414 F----KD------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTI 477 (655)
Q Consensus 414 ~----~~------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~ 477 (655)
+ +. ..+.+|||||+|||++++ +|+++++++++++.||++.+++.++.||+++|+...+.....
T Consensus 379 ~g~~~~~~~~~i~~ll~~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~ 457 (650)
T 2xhe_A 379 DGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRGR 457 (650)
T ss_dssp SCCBCCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCC
T ss_pred cccchhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccccc
Confidence 2 21 678999999999999998 489988899999999999999999999999998865531100
Q ss_pred CCCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCccccc
Q 006227 478 GAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHS 557 (655)
Q Consensus 478 ~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s 557 (655)
..| ...+++ .+.+|+||||+|++++|||.+++++++++.||++.++.+...+.+...+.....+...
T Consensus 458 ~~~----------~~~rk~---~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (650)
T 2xhe_A 458 KPK----------TMKRIE---RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPA 524 (650)
T ss_dssp CCC----------CCCCCC---CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC--------------
T ss_pred ccc----------cccccc---cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCcccccccccccccccccccc
Confidence 111 111112 2238999999999999999999999999999999754322111100000000000011
Q ss_pred ccCCCCCCccCCCCCCCC----CCccccccccc-cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccC
Q 006227 558 MRSRRTPTWARPRSSDDG----YSSDSVLKHAS-SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDD 632 (655)
Q Consensus 558 ~~~~r~~~~~~~~~~~~~----~~~~s~~~~~~-~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~ 632 (655)
.++.|.++|+++..+... .++.+..+... ++....++++||||||||||+|+|++|+|+++.|++|+||||+|+|
T Consensus 525 ~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~Iln 604 (650)
T 2xhe_A 525 TSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIAT 604 (650)
T ss_dssp -------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEECC
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCcCC
Confidence 123345688865432211 11111111000 0011357889999999999999999999999899999999999999
Q ss_pred hhHHHHHHhccCCCC
Q 006227 633 PPQFITKLKMLTAHE 647 (655)
Q Consensus 633 ~~~fi~~l~~l~~~~ 647 (655)
|++||++|..|++++
T Consensus 605 ~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 605 PAEFVELVSLLDKAD 619 (650)
T ss_dssp HHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999998765
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.5e-103 Score=894.00 Aligned_cols=567 Identities=30% Similarity=0.525 Sum_probs=462.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEEEcCCH
Q 006227 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (655)
Q Consensus 17 ~l~~~~~~~l~~~~L~~~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyfi~Pt~ 96 (655)
+|++++|++++++|++.+++ .++|||||+|+.++++||++|++++|+++||+++++|+.+|+|+|+++|||||+||.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~ 78 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE 78 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCS---SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhhcc---CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCH
Confidence 58999999999999998863 246999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeecCchhhhhhcCCC
Q 006227 97 ENVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDE 175 (655)
Q Consensus 97 ~~i~~I~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~dlfsl~~~~~~~~l~~~~ 175 (655)
+||++|++|++++ .|+|++|||||++.+|+.+++.||+. ++.+.|.++.|+++||+|+|+|+|||++|++|..+|.+.
T Consensus 79 ~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 79 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 9999999999752 48999999999999999999999974 588899999999999999999999999999999999863
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006227 176 ESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM---SET 252 (655)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (655)
. .......++.+|++|+++|.++|.+|.|||+|++ ..|+++|+.++++|..+..+...|+. .++
T Consensus 158 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1epu_A 158 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKDR 224 (591)
T ss_dssp G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 2 1123678999999999999999999999999884 24788899998888887665555532 357
Q ss_pred eeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCchHHHHhhhccHHHHHHHHHH
Q 006227 253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHE 332 (655)
Q Consensus 253 ~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~ 332 (655)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+ .++..++|++.|+++|+||.++||+||++|++.|.+
T Consensus 225 ~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred ceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753 222345678999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCC
Q 006227 333 KMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA 412 (655)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~ 412 (655)
++++|+++++..+. ++..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 303 ~~~~~~~~~~~~~~------~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 375 (591)
T 1epu_A 303 KLKQFADEKRMGTA------ADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD 375 (591)
T ss_dssp HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhcccccc------ccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 99999987532110 134578999999999999999999999999999999999999 99999999999999976
Q ss_pred CC----CC------------CCCchhhHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccccc
Q 006227 413 GF----KD------------DITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKST 476 (655)
Q Consensus 413 ~~----~~------------~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~ 476 (655)
.+ +. ..+.+|||||+|||++++ +|++++++.++++.+|++.+++.++.+|+++|+...+...+
T Consensus 376 ~~g~~~k~~~~~i~~~l~~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~ 454 (591)
T 1epu_A 376 ADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGR 454 (591)
T ss_dssp TTSCBCCCCHHHHHHHHTCTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTS
T ss_pred ccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCcc
Confidence 43 11 578999999999999998 48998889999999999989999999999999876553211
Q ss_pred CCCCcchhhhhhhhhhcccCCCCCcccceecccchHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCCCCCCcccc
Q 006227 477 IGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 556 (655)
Q Consensus 477 ~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~ 556 (655)
...|...+ .+. ++. .+.+..|+||||+|++++|||.+++++++++.|||++++.+.. +. .
T Consensus 455 ~~~~~~~~--~~~----~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~-~~------------~ 514 (591)
T 1epu_A 455 RKIPQPYH--THN----RKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRP-SC------------Q 514 (591)
T ss_dssp CCCCCTTS--GGG----SCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------
T ss_pred cccccccc--ccc----ccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCcc-cc------------C
Confidence 11121100 010 111 3567889999999999999999999999999999997543210 00 0
Q ss_pred cccCCCCCCccCCCCCCCCCCccccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHh--hCCCeEEEccCcccChh
Q 006227 557 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA--KLNREVVLGSSSLDDPP 634 (655)
Q Consensus 557 s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~--~~~~~iiigsT~Ii~~~ 634 (655)
..++.+++.|+++.+... ...++++|||||||+||+|++++|+|++ ..|++|+||||+|+||+
T Consensus 515 ~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~ 579 (591)
T 1epu_A 515 QPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPE 579 (591)
T ss_dssp ----------------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHH
T ss_pred CccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHH
Confidence 111233467875432110 1235679999999999999999999998 57899999999999999
Q ss_pred HHHHHHhccCC
Q 006227 635 QFITKLKMLTA 645 (655)
Q Consensus 635 ~fi~~l~~l~~ 645 (655)
+|+++|..|++
T Consensus 580 ~fl~~l~~l~~ 590 (591)
T 1epu_A 580 GLLRDLRKISN 590 (591)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=4.2e-92 Score=809.04 Aligned_cols=573 Identities=20% Similarity=0.320 Sum_probs=428.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC-----CC----------CCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccC
Q 006227 15 YKNFKQITRERLLYEMLRSAKT-----GK----------SKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRR 79 (655)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~~~~-----~~----------~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~ 79 (655)
..+||+.|++.|+ .||+.... +. ..++|||||+|+.++++||++|++++|+++||++++.|+..
T Consensus 16 ~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~ 94 (671)
T 1mqs_A 16 DISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD 94 (671)
T ss_dssp CCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC
T ss_pred cccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCC
Confidence 3679999999999 99987642 01 24679999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEcCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhC---CCcccccceeEEEecceeecc
Q 006227 80 RQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAVD 156 (655)
Q Consensus 80 r~~~~~~~aIyfi~Pt~~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~---~~~~~~i~~i~e~~~dfipld 156 (655)
|+|+|+++|||||+|+.+||++|++||++ |+|++|||||++++|+.++|+||+. .++.+.|.+|.|+++||+|+|
T Consensus 95 r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple 172 (671)
T 1mqs_A 95 RSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTE 172 (671)
T ss_dssp CCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECS
T ss_pred CCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeecc
Confidence 99999999999999999999999999974 7999999999999999999999973 688999999999999999999
Q ss_pred CCceeecCchhhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhHHHHHHHHHHHH
Q 006227 157 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNC 236 (655)
Q Consensus 157 ~dlfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~~~la~~l~~~ 236 (655)
+|+|||++|++|..+|.+..|....+..++.+|++|+++|.++|.+|.|||..+. .|+.+|..+...
T Consensus 173 ~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~~ 239 (671)
T 1mqs_A 173 PELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGTK 239 (671)
T ss_dssp TTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHHH
T ss_pred CCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHHH
Confidence 9999999999999999977655555688999999999999999999999985442 244555555555
Q ss_pred HHHhhhhc--CCC------CCCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEEeccCCCC-------CCC
Q 006227 237 LMKYKQTI--QNF------PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTD-------GPP 301 (655)
Q Consensus 237 l~~~~~~~--~~~------~~~~~~~LiIlDR~~D~iTPLlh~~TYqaLl~el~~I~~~~v~~~~~~~~g-------~~~ 301 (655)
+..+.... ..| +...+++|||+||++|++|||+||||||||+||+|||++|+|+++.....+ ...
T Consensus 240 l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~ 319 (671)
T 1mqs_A 240 LRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPL 319 (671)
T ss_dssp HHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------
T ss_pred HHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccc
Confidence 54432211 123 123578999999999999999999999999999999999999997632211 013
Q ss_pred cceeEecCCCchHHHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhc--CCC------CCCCCCHHHHHHHHHhccchHH
Q 006227 302 EKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN--GSR------DGSNLSTRDLQKLVQALPQYSE 373 (655)
Q Consensus 302 ~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~s~~~~~~~v~~lp~~~~ 373 (655)
++|++.|+++|+||.++||+||++|++.|.+++++|+++++. +++ +.. ++...+++||++||++||+|++
T Consensus 320 ~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~ 397 (671)
T 1mqs_A 320 ATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTA 397 (671)
T ss_dssp CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHH--HHHHC--------------------CCCCSCHHHHH
T ss_pred cceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhcccCccCcccccccccccHHHHHHHHHHhHHHHH
Confidence 458899999999999999999999999999999999987642 221 100 1224579999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhcCCCCC-------CC-CCCchhhHHHHHHHHHhCCCCCCchHH--
Q 006227 374 QIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGF-------KD-DITRENKLRLLMIVASIYPEKFEGEKG-- 443 (655)
Q Consensus 374 ~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~~~~~~-------~~-~~~~~dkLRLl~L~~l~~~~g~~~~~~-- 443 (655)
+++.+++|++||++|++.+++++|++++++||+|+.+.+.. .. ..+.+|||||+|||++++++|+++.++
T Consensus 398 ~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~ 477 (671)
T 1mqs_A 398 KKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQN 477 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCSSHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999997322110 00 248999999999999998327887764
Q ss_pred -HHHHHHcCCChhHHHHHHHHHHhcCcc---c--cc---cc-c---CCC-CcchhhhhhhhhhcccCC----CCCcccce
Q 006227 444 -LNLMKLAKLTADDMTAVNNMRLLGGAL---E--SK---KS-T---IGA-FSLKFDIHKKKRAARKDR----SGGEETWQ 505 (655)
Q Consensus 444 -~~llq~~g~~~~~~~~l~~L~~lg~~~---~--~~---~~-~---~~~-~~~~f~~~k~~~~~~~~~----~~~~~~y~ 505 (655)
++.++.+|++...+..+.++..++... . +. ++ . .++ |+..+. +-..+.+.... .+..+-|+
T Consensus 478 l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~~~~~~~v~n~~P 556 (671)
T 1mqs_A 478 VENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGVGSLISGIKKLLP 556 (671)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSCSSSHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccchhhHHHhHHhhCC
Confidence 456788999755555555555443111 0 00 00 0 011 222111 00011111000 00111121
Q ss_pred ecccchHHHHHHHHHhcC-----C--CCCCCCCcccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCc
Q 006227 506 LSRFYPMIEELVEKLGKN-----E--LSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSS 578 (655)
Q Consensus 506 ~s~y~Pli~~lve~~~~~-----~--l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~ 578 (655)
..+.|.++++++.++++ + ++.++|||++ |... .|. .+....
T Consensus 557 -~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~-p~~~-~~~------------~~~~~~----------------- 604 (671)
T 1mqs_A 557 -EKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYID-PKIT-RGS------------HTRKPK----------------- 604 (671)
T ss_dssp -CCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEEC-TTSS-SCS------------SSCCCC-----------------
T ss_pred -CcccchHHHHHHHHHhccccccccCCCccCceeeC-CCCc-CCC------------CCCCcc-----------------
Confidence 34566799999999998 3 5568999986 3211 000 000000
Q ss_pred cccccccccccccCCCeEEEEEEcCCCHHHHHHHHHHHhh---CCCeEEEccCcccChhHHHHHHhccCCCCCC
Q 006227 579 DSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAK---LNREVVLGSSSLDDPPQFITKLKMLTAHELS 649 (655)
Q Consensus 579 ~s~~~~~~~~~~~~~~~viVfviGGvTy~Ei~al~~l~~~---~~~~iiigsT~Ii~~~~fi~~l~~l~~~~~~ 649 (655)
..+++++|||||||+||+|++++|+|+++ .|++|+||||+|+||++|+++|..|++...+
T Consensus 605 -----------~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~~ 667 (671)
T 1mqs_A 605 -----------RQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS 667 (671)
T ss_dssp -----------CCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTTC
T ss_pred -----------cCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccccc
Confidence 12468999999999999999999999987 3799999999999999999999999876533
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.96 E-value=2.4e-29 Score=232.72 Aligned_cols=133 Identities=26% Similarity=0.443 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC----CCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeecccCCCCCCCCeEEEE
Q 006227 16 KNFKQITRERLLYEMLRSAKTG----KSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYF 91 (655)
Q Consensus 16 ~~l~~~~~~~l~~~~L~~~~~~----~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~r~~~~~~~aIyf 91 (655)
.+||+.+|++|+ +||+.+++. ...++|||||+|+.++++||++|+++||+++||+++++|+++|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 489999999999 999986421 124679999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecc
Q 006227 92 IQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (655)
Q Consensus 92 i~Pt~~~i~~I~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~---~~~~~~~i~~i~e~~~d 151 (655)
|+||.+||++|++||++ |+|++|||||++.+|+.+++.||+ +.+..++|++|.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999975 899999999999999999999997 36778889888887765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.86 E-value=63 Score=21.35 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHhccchHHHhhhHHHHHHHHHH
Q 006227 356 LSTRDLQKLVQALPQYSEQIDKLSLHVEIAGK 387 (655)
Q Consensus 356 ~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~ 387 (655)
+++.++++++..|.+-..+.+++.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47788999998888877777888888877644
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=31.27 E-value=31 Score=33.09 Aligned_cols=43 Identities=7% Similarity=0.148 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 641 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~ 641 (655)
.+.|.|.||++-.-+..+.+. |.+++|.++.|++.++.-+.++
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~a----GAd~~V~GsaIf~~~d~~~~i~ 215 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASH----GANIIVAGTSIFNAEDPKYVID 215 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHH----TCCEEEESHHHHTCSSHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHc----CCCEEEEeHHHhCCCCHHHHHH
Confidence 567899999998866666553 8999999999997644433333
No 10
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=24.33 E-value=31 Score=32.94 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 640 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l 640 (655)
.+-|++.||+|-.-+..+... |.++++.++.|+..++.-+.+
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~a----GaD~vvvGsai~~~~d~~~~~ 214 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASA----GANCIVAGSSIFGAAEPGEVI 214 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHH----TCCEEEESHHHHTSSCHHHHH
T ss_pred CCCEEEECCcCHHHHHHHHHc----CCCEEEECHHHHCCCCHHHHH
Confidence 455899999998655444332 899999999999765443333
No 11
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=22.86 E-value=70 Score=29.98 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=36.7
Q ss_pred eEEEEEEcCC-CHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006227 595 RIFVFIVGGT-TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 643 (655)
Q Consensus 595 ~viVfviGGv-Ty~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~l 643 (655)
.+-|+..||+ |...+..+... |.+.++.++.|..|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~----Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL----GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT----TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHc----CCCEEEEChHHcCcHHHHHHHHHH
Confidence 4678999999 88888877663 788888889999999888887643
No 12
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=22.47 E-value=55 Score=31.59 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=32.3
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 642 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigsT~Ii~~~~fi~~l~~ 642 (655)
.+.|.|.||+|-..+..+.+ -..|.+++|.++.|+.. +.-+.++.
T Consensus 187 ~~~I~vdGGI~~~~~~~~~~--~~aGad~~VvGSaIf~~-d~~~~~~~ 231 (237)
T 3cu2_A 187 EKLINIDGSMTLELAKYFKQ--GTHQIDWLVSGSALFSG-ELKTNLKV 231 (237)
T ss_dssp GCEEEEESSCCHHHHHHHHH--SSSCCCCEEECGGGGSS-CHHHHHHH
T ss_pred CceEEEECCcCHHHHHHHHH--hCCCCcEEEEeeHHhCC-CHHHHHHH
Confidence 57789999999877766643 01489999999999965 44444433
No 13
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=21.58 E-value=54 Score=31.49 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=32.5
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEcc-CcccChh----HHHHHHh
Q 006227 595 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGS-SSLDDPP----QFITKLK 641 (655)
Q Consensus 595 ~viVfviGGvTy~Ei~al~~l~~~~~~~iiigs-T~Ii~~~----~fi~~l~ 641 (655)
.+.|.|-|||+-..+..+.+. |.+++|.| +.|+..+ .-++.|+
T Consensus 167 ~~~I~VdGGI~~~~~~~~~~a----GAd~~V~G~saif~~~d~~~~~~~~l~ 214 (231)
T 3ctl_A 167 EYEIEVDGSCNQATYEKLMAA----GADVFIVGTSGLFNHAENIDEAWRIMT 214 (231)
T ss_dssp CCEEEEESCCSTTTHHHHHHH----TCCEEEECTTTTGGGCSSHHHHHHHHH
T ss_pred CceEEEECCcCHHHHHHHHHc----CCCEEEEccHHHhCCCCcHHHHHHHHH
Confidence 577899999998887777654 89999999 9999643 4444443
Done!