BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006229
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWD 625
L + S DRTVR+WD
Sbjct: 180 LVSGSGDRTVRIWD 193
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---------------- 598
TS V FS DG+ LATG + V ++ V ++
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 599 -WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635
+I V FSP LAT + DR +R+WD EN RK+ I
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMI 160
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 558 VESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEE------HTQWITDVRFSPSL 609
V + SP DGK +A G D+ +W +E+ F V+ E H + V F+
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 610 SRLATSSADRTVRVWDTEN 628
+ + S DR+V++W+ +N
Sbjct: 269 QSVVSGSLDRSVKLWNLQN 287
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTE------------SFTVKSTLEEHTQWITDVRF 605
V S F+ DG+ + +G D+ LW + S T + T H ++ V
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 606 SPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGS 649
+ + + + S DR V WD ++ L + ++ +S A+ +
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 545 FTEFQLI-----PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKST 592
+ +F LI A + S + P LLA G D +W E + +
Sbjct: 43 YDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI 102
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643
+E H + V +S LAT S D++V +W+T+ + Y+CI V
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE-----YECISV 148
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NVRK 631
LW ++T+ HT + RFSP LA+ SAD T+R+WD N RK
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616 SADRTVRVWDTENVRK 631
S D+T+RVW+T+ V K
Sbjct: 901 SDDQTIRVWETKKVCK 916
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENVRKLTFICCYKCIFVST-AIGSCF 651
EH++ + F+ + LAT S D +++WD C +F T ++ C
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE------CRNTMFGHTNSVNHCR 750
Query: 652 FAP 654
F+P
Sbjct: 751 FSP 753
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 613 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 612 LATSSADRTVRVWDT 626
+AT SAD+ V++WD+
Sbjct: 672 IATCSADKKVKIWDS 686
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V F+ DGK L + D +W ++ L+ H + + D R SRL + S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQD-SRLLSWSF 1063
Query: 618 DRTVRVWDTENVRKLTFICCYKCIFVSTAIGS 649
D TV+VW+ R C++ +S AI S
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 563 FSPDGKLLATGGHDKKAVLW---------CTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
FS DG LLATG + + +W +V+ H W+TDV FSP L
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 614 TSSADRTVRVWDT 626
SA ++ W+
Sbjct: 1195 --SAGGYLKWWNV 1205
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NVRK 631
LW ++T+ HT + RFSP LA+ SAD T+R+WD N RK
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 786
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616 SADRTVRVWDTENVRK 631
S D+T+RVW+T+ V K
Sbjct: 908 SDDQTIRVWETKKVCK 923
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENVRKLTFICCYKCIFVST-AIGSCF 651
EH++ + F+ + LAT S D +++WD C +F T ++ C
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE------CRNTMFGHTNSVNHCR 757
Query: 652 FAP 654
F+P
Sbjct: 758 FSP 760
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 620 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 612 LATSSADRTVRVWDT 626
+AT SAD+ V++WD+
Sbjct: 679 IATCSADKKVKIWDS 693
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V F+ DGK L + D +W ++ L+ H + + D R SRL + S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQD-SRLLSWSF 1070
Query: 618 DRTVRVWDTENVRKLTFICCYKCIFVSTAIGS 649
D TV+VW+ R C++ +S AI S
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 563 FSPDGKLLATGGHDKKAVLW---------CTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
FS DG LLATG + + +W +V+ H W+TDV FSP L
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 614 TSSADRTVRVWDT 626
SA ++ W+
Sbjct: 1202 --SAGGYLKWWNV 1212
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 616 SADRTVRVWDTENVRK 631
S D+T+R+W+T+ V K
Sbjct: 907 SDDQTIRLWETKKVCK 922
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 555 TSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
+ +V CHF S LLATG D LW ++T+ HT + RFSP L
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 613 ATSSADRTVRVWD--TENVRK 631
A+ SAD T+++WD + N RK
Sbjct: 765 ASCSADGTLKLWDATSANERK 785
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENVRKLTFICCYKCIFVST-AIGSCF 651
EH++ + F+ S LAT S+D +++WD C +F T ++ C
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE------CRNTMFGHTNSVNHCR 756
Query: 652 FAP 654
F+P
Sbjct: 757 FSP 759
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 612 LATSSADRTVRVWDT 626
+AT S D+ V++W++
Sbjct: 678 IATCSVDKKVKIWNS 692
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 618 DRTVRVWDTEN 628
+ +R+W+ N
Sbjct: 1154 NGEIRIWNVSN 1164
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 518
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 519 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVWGVAFSP 559
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 149
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 150 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVWGVAFSP 190
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
P +A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 395 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVWGVAFSP 436
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
P +A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 67 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVRGVAFSP 108
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 436
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVRGVAFSP 477
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVWGVAFSP 149
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 231
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S D+TV++W+
Sbjct: 232 DGQTIASASDDKTVKLWN 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 190
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVRGVAFSP 231
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQHLQTLTGH-----SSSVWGVAFSP 354
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V F P
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVNGVAFRP 272
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVWGVAFSP 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPD + +A+ DK LW ++ TL H+ + V FSP
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 477
Query: 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
+A++S D+TV++W+ N + L + + S+++ F+P
Sbjct: 478 DGQTIASASDDKTVKLWN-RNGQLLQTLTGH-----SSSVRGVAFSP 518
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
T+ H I+DV +S + L ++S D+T+++WD + + L
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 103
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 136 IWDVKTGKCL 145
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
T+ H I+DV +S + L ++S D+T+++WD + + L
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 103
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 136 IWDVKTGKCL 145
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
T+ H I+DV +S + L ++S D+T+++WD + + L
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 103
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 136 IWDVKTGKCL 145
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSR-- 611
T V S FSPD + + +GG D +W + + + + HT W++ VRFSPSL
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 612 LATSSADRTVRVWDTENVRKLT 633
+ + D V+VWD R +T
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVT 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
A T V FSP D ++ +GG D +W + + + L+ HT ++T V SP S
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 611 RLATSSADRTVRVWD 625
A+S D R+WD
Sbjct: 210 LCASSDKDGVARLWD 224
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S +G + D LW ++ + HT+ + V FSP ++ + D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 623 VWDTE 627
VW+ +
Sbjct: 135 VWNVK 139
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFF 652
LE H+ +++DV S + + ++S D ++R+W+ +N + C YK + + + S F
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ-----CQYKFLGHTKDVLSVAF 117
Query: 653 AP 654
+P
Sbjct: 118 SP 119
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557
A +LT FV+D L + + LS D R ++ G + F T
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALS----GSWDGELRLWDLAAGVSTRRFV---GHTKD 474
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR--L 612
V S FS D + + + D+ LW T +T+ E H W++ VRFSP+ + +
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 613 ATSSADRTVRVWDTENVR 630
++S D+TV+VW+ N +
Sbjct: 535 VSASWDKTVKVWNLSNCK 552
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ + + DK +W + ++STL HT +++ V SP S A+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 616 SADRTVRVWDTENVRKL 632
D V +WD +KL
Sbjct: 580 GKDGVVLLWDLAEGKKL 596
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 615 SSADRTVRVWDTEN 628
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENVRKLTF 634
DRT+++W+T K T
Sbjct: 493 DRTIKLWNTLGECKYTI 509
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENVR 630
+ + D+ V+VW+ N +
Sbjct: 186 PIIVSCGWDKLVKVWNLANCK 206
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 623 VWDTENVRKLT 633
+W+T V K T
Sbjct: 154 LWNTLGVCKYT 164
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + + SPDG L A+GG D +A+LW TL+ I + FSP+ L
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCA 273
Query: 615 SSADRTVRVWDTE 627
++ ++++WD E
Sbjct: 274 ATGP-SIKIWDLE 285
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ ++ + G DK +W + +K+ HT ++ V SP S A+
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 616 SADRTVRVWDTENVRKL 632
D +WD + L
Sbjct: 234 GKDGQAMLWDLNEGKHL 250
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENVR 630
+ + D+ V+VW+ N +
Sbjct: 163 PIIVSCGWDKLVKVWNLANCK 183
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 623 VWDTENVRKLT 633
+W+T V K T
Sbjct: 131 LWNTLGVCKYT 141
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + + SPDG L A+GG D +A+LW TL+ I + FSP+ L
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCA 250
Query: 615 SSADRTVRVWDTE 627
++ ++++WD E
Sbjct: 251 ATGP-SIKIWDLE 262
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 554 STSKVESC-HFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
S S+ SC FSP+ ++ + G DK +W + +K+ HT ++ V SP S
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 611 RLATSSADRTVRVWDTENVRKL 632
A+ D +WD + L
Sbjct: 206 LCASGGKDGQAMLWDLNEGKHL 227
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
+ + + TGG D +W +++ ++STLE H+ W+ DV +SP++ S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
DRT +W +N
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 89 ASDDKTLKIWDVSSGKCL 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 139 IWDVKTGKCL 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 89 ASDDKTLKIWDVSSGKCL 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 139 IWDVKTGKCL 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENVRKL 632
L ++S D+T+++WD + + L
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCL 117
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 150 IWDVKTGKCL 159
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 625 DTE 627
++
Sbjct: 326 KSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 88 ASDDKTLKIWDVSSGKCL 105
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 251
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 138 IWDVKTGKCL 147
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 625 DTE 627
++
Sbjct: 314 KSD 316
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 89 ASDDKTLKIWDVSSGKCL 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 139 IWDVKTGKCL 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 611 RLATSSADRTVRVWDTENVRKL 632
L ++S D+T+++WD + + L
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCL 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 245
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 132 IWDVKTGKCL 141
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 625 DTE 627
++
Sbjct: 308 KSD 310
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 86 ASDDKTLKIWDVSSGKCL 103
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D +++WD + L +K CIF + ++
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 623 VWDTE 627
+WD +
Sbjct: 136 IWDVK 140
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 86 ASDDKTLKIWDVSSGKCL 103
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 623 VWDTE 627
+WD +
Sbjct: 136 IWDVK 140
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWDTENV 629
P + + LA+S DR + VWD +
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKI 352
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENVR 630
D N++
Sbjct: 304 DLRNLK 309
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 587
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+TLE H + + F PS RLA+ S DRTVR+W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRL 612
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENVRKLTFICC 637
A++S D TV+++ E + ++CC
Sbjct: 166 ASASYDDTVKLYREE---EDDWVCC 187
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 563 FSPDGKLLATGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+SP G LA+ D +W + F +TLE H + V ++PS + LAT S D++
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 621 VRVWDTENVRKLTFICCYKCIFV 643
V VW+ + + Y+C+ V
Sbjct: 129 VWVWEVDEEDE------YECVSV 145
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVW 624
T +W
Sbjct: 84 TTCIW 88
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 84 ASDDKTLKIWDVSSGKCL 101
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 247
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 134 IWDVKTGKCL 143
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 625 DTE 627
++
Sbjct: 310 KSD 312
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 83 ASDDKTLKIWDVSSGKCL 100
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 133 IWDVKTGKCL 142
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 79 ASDDKTLKIWDVSSGKCL 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 242
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 129 IWDVKTGKCL 138
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 625 DTE 627
++
Sbjct: 305 KSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 83 ASDDKTLKIWDVSSGKCL 100
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 133 IWDVKTGKCL 142
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 107 ASDDKTLKIWDVSSGKCL 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 270
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 157 IWDVKTGKCL 166
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 625 DTE 627
++
Sbjct: 333 KSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENVRKL 632
+S D+T+++WD + + L
Sbjct: 105 ASDDKTLKIWDVSSGKCL 122
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYK----CIFVSTAI 647
P+ + ++ D T+++WD + L +K CIF + ++
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
+S D LL + DK +W S TL+ H+ ++ F+P + + + S D +VR
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 623 VWDTENVRKL 632
+WD + + L
Sbjct: 155 IWDVKTGKCL 164
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 625 DTE 627
++
Sbjct: 331 KSD 333
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWDTENV 629
P + + LA+S DR + VWD +
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKI 352
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENVR 630
D N++
Sbjct: 304 DLRNLK 309
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTE 627
+++ RF +++ TSS D T +WD E
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIE 183
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 615 SSADRTVRVWD 625
S D T R++D
Sbjct: 255 GSDDATCRLFD 265
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 614 TSSADRTVRVWDTE----NVR 630
D +++ + NVR
Sbjct: 125 CGGLDNICSIYNLKTREGNVR 145
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 611 RLATSSADRTVRVWDT-ENVRKLTF 634
+ + D + ++WD E + + TF
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTF 233
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTE 627
+++ RF +++ TSS D T +WD E
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWD 625
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTE----NVR 630
D +++ + NVR
Sbjct: 114 CGGLDNICSIYNLKTREGNVR 134
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDT-ENVRKLTF 634
+ + D + ++WD E + + TF
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTF 222
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTE 627
+++ RF +++ TSS D T +WD E
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWD 625
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTE----NVR 630
D +++ + NVR
Sbjct: 114 CGGLDNICSIYNLKTREGNVR 134
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDT-ENVRKLTF 634
+ + D + ++WD E + + TF
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTF 222
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTE 627
+++ RF +++ TSS D T +WD E
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWD 625
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTE----NVR 630
D +++ + NVR
Sbjct: 114 CGGLDNICSIYNLKTREGNVR 134
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDT-ENVRKLTF 634
+ + D + ++WD E + + TF
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTF 222
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTE 627
+++ RF +++ TSS D T +WD E
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S +PD +L +G D A LW + T H I + F P+ + AT
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 615 SSADRTVRVWD 625
S D T R++D
Sbjct: 244 GSDDATCRLFD 254
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 613
+K+ + H+ D +LL + D K ++W +S+T + + W+ ++PS + +A
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 614 TSSADRTVRVWDTE----NVR 630
D +++ + NVR
Sbjct: 114 CGGLDNICSIYNLKTREGNVR 134
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T + C F D +++ + G D LW E+ +T HT + + +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 611 RLATSSADRTVRVWDT-ENVRKLTF 634
+ + D + ++WD E + + TF
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTF 222
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWDTENV 629
+ + LA+S DR + VWD +
Sbjct: 337 NETILASSGTDRRLHVWDLSKI 358
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENVR 630
D N++
Sbjct: 310 DLRNLK 315
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWDTENVR 630
+++A++SAD+T+++W+ ++
Sbjct: 250 DGTKIASASADKTIKIWNVATLK 272
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWD 625
D T+ +++
Sbjct: 210 GDGTIVLYN 218
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 612
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 613 ATSSADRTVRVWD 625
AT S D +V VW+
Sbjct: 552 ATGSLDNSVIVWN 564
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWDTENV 629
+ + LA+S DR + VWD +
Sbjct: 335 NETILASSGTDRRLHVWDLSKI 356
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENVR 630
D N++
Sbjct: 308 DLRNLK 313
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWDTENV 629
+ + LA+S DR + VWD +
Sbjct: 333 NETILASSGTDRRLHVWDLSKI 354
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENVR 630
D N++
Sbjct: 306 DLRNLK 311
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWDTENV 629
+ + LA+S DR + VWD +
Sbjct: 329 NETILASSGTDRRLNVWDLSKI 350
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENVR 630
D N++
Sbjct: 302 DLRNLK 307
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 27/149 (18%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
LT + FV D +L +N + S D+ R ++ G T+ F S+V S
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
FSPD + + + G +++ LW C S K E H+ W++ VR+SP +
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENVRKLTF 634
A+ D ++VW+T + TF
Sbjct: 181 QPFAPYFASVGWDGRLKVWNTNFQIRYTF 209
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 546 TEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
T FQ+ A S V SP+GK +ATGG DKK ++W + T + I
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ 260
Query: 603 VRFSPSLSRLATSSADRTVRVWD 625
+ F+P L +A + D+ V++++
Sbjct: 261 IAFNPKLQWVAVGT-DQGVKIFN 282
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
I S +KV+ P A+ G D + +W T +F ++ T + H + + SP+
Sbjct: 173 IMKSANKVQ-----PFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK 226
Query: 611 RLATSSADRTVRVWDTENV 629
+AT D+ + +WD N+
Sbjct: 227 YIATGGKDKKLLIWDILNL 245
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWD 625
+T+R+WD
Sbjct: 98 KTLRLWD 104
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G +GG DKKA++W S E H + VR+ PS A+ S D T R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 624 WDTENVRKLTFICCYKCIFVSTAI 647
+D R++ IF ++++
Sbjct: 267 YDLRADREVAIYSKESIIFGASSV 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FS G+LL G +D +W + S L H ++ +R SP + + S D T+R
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 623 VW 624
VW
Sbjct: 352 VW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S +SPDGK LA+G D ++ + + TLE H I + FSP L T+S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 618 DRTVRVWDTEN 628
D ++++D ++
Sbjct: 227 DGYIKIYDVQH 237
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD + LATG H K ++ ES + +L+ ++I + +SP LA+ + D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENVRKL 632
++D + L
Sbjct: 190 IFDIATGKLL 199
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPD +LL T D ++ + + TL H W+ +V F P + +SS+
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268
Query: 618 DRTVRVWDT 626
D++V+VWD
Sbjct: 269 DKSVKVWDV 277
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++ I
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI 118
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTEN 628
WD EN
Sbjct: 337 WDLEN 341
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 362
Query: 608 SLSRLATSSADRTVRVWDTENV-RKLTF 634
L +++AD ++R WD + RK ++
Sbjct: 363 KF--LVSAAADGSIRGWDANDYSRKFSY 388
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW + F T+ H ++ V P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTE 627
+ ++S D+T+++W+ +
Sbjct: 206 HIVSASRDKTIKMWEVQ 222
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P ++ + D +W E+ + TL+ HT + D+ F S LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWD 625
+WD
Sbjct: 176 LWD 178
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S P+G + + DK +W ++ T H +W+ VR + + +A+ S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 618 DRTVRVW 624
D+TVRVW
Sbjct: 255 DQTVRVW 261
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
G L +G DK +W + TL H W+ V F + + + D+T+RVWD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 627 ENVR 630
+N R
Sbjct: 368 KNKR 371
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F GK + + DK +W ++ TL H ++T + F + + T S D+TV+
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 623 VWD 625
VW+
Sbjct: 406 VWE 408
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 23/117 (19%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD+ + EV G+ F V + DG L+A+ +D+ +W +
Sbjct: 212 RDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 590 KSTLEEHTQWITDVRFSPSLSR--------------------LATSSADRTVRVWDT 626
K+ L EH + + ++P S L + S D+T+++WD
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
K L H +T V F P S + ++S D T++VWD E
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTEN 628
WD EN
Sbjct: 337 WDLEN 341
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENV-RKLTF 634
L +++AD ++R WD + RK ++
Sbjct: 365 --LVSAAADGSIRGWDANDYSRKFSY 388
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 568 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 620
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 621 VRVWDTENVRKLTF 634
V +W ++ T+
Sbjct: 240 VFIWTCDDASSNTW 253
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSL- 609
V C F+P+G+ +A GG D ++ S V L H + + ++ P
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 610 SRLATSSADRTVRVWDTENVRKLTFI 635
+RL T S D+T +WD ++++
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIF 196
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/75 (16%), Positives = 33/75 (44%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ + KV S ++P+ + + D + ++W + ++ H W+ + F+P+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 611 RLATSSADRTVRVWD 625
+A D +++
Sbjct: 122 SVACGGLDSACSIFN 136
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 239 E-VFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 128 DKTIKVW 134
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TE 627
E
Sbjct: 306 VE 307
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T T + T++V S F DG + +G D +W E+ TL H + +
Sbjct: 268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 604 RFSPSLSRLATSSADRTVRVWDTE 627
++ L + +AD TV++WD +
Sbjct: 326 ELKDNI--LVSGNADSTVKIWDIK 347
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
++ +G D+ +W E+ TL HT + + R+ + S D T+RVWD E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIE 227
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 239 E-VFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 128 DKTIKVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 239 E-VFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 128 DKTIKVW 134
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 555 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 612 LATSSADRTVRVWDTENVRKL 632
L T D TVR WD R+L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQL 218
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 615
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 616 SADRTVRVWDTEN 628
+D + VWD N
Sbjct: 160 CSDGNIAVWDLHN 172
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 239 E-VFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 128 DKTIKVW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 233 E-VFSLAFSPNRYWLAAATA 251
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 122 DKTIKVW 128
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVW 624
DRTV+VW
Sbjct: 160 CLDRTVKVW 168
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DTENVR 630
++ +
Sbjct: 256 NSSTYK 261
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSA 617
+ + + FSP+ LA ++A
Sbjct: 239 E-VFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 618 DRTVRVW 624
D+T++VW
Sbjct: 128 DKTIKVW 134
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVW 624
DRTV+VW
Sbjct: 160 CLDRTVKVW 168
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DTENVR 630
++ +
Sbjct: 256 NSSTYK 261
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENVRKLTFIC---CYKCIFVSTAIGSCFF 652
+ V + P S LAT ++DR +R+W+ +C C + + + S +
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWN---------VCSGACLSAVDAHSQVCSILW 339
Query: 653 AP 654
+P
Sbjct: 340 SP 341
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENVRKLTFIC---CYKCIFVSTAIGSCFF 652
+ V + P S LAT ++DR +R+W+ +C C + + + S +
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWN---------VCSGACLSAVDAHSQVCSILW 328
Query: 653 AP 654
+P
Sbjct: 329 SP 330
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D K + + D+ +W T + TL H + I +++ L + + S+D T+R+WD
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWD 322
Query: 626 TE 627
E
Sbjct: 323 IE 324
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
+L+ +G D LW E LE H + + +RF R+ + + D ++VWD
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWD 362
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 562 HFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
H + ++ T D+ +W S T++ L H + V F + ++S D
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGD 275
Query: 619 RTVRVWDT---ENVRKL 632
RT++VW+T E VR L
Sbjct: 276 RTIKVWNTSTCEFVRTL 292
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVW 624
DRTV+VW
Sbjct: 160 CLDRTVKVW 168
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DTENVR 630
++ +
Sbjct: 256 NSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
+ S P + +G D LW E+ + ++ T E H ++ V F+P S A+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVW 624
DRTV+VW
Sbjct: 160 CLDRTVKVW 168
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DTENVR 630
++ +
Sbjct: 256 NSSTYK 261
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 558 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 613
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 614 TSSADRTVRVWDT 626
T+SAD V++WD
Sbjct: 204 TASADSRVKLWDV 216
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 612
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 613 ATSSA-DRTVRVWDTENVR 630
TSS+ D+T++VWDT ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQ 133
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENVRKLTFIC---CYKCIFVSTAIGSCFF 652
+ V + P S LAT ++DR +R+W+ +C C + + + S +
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWN---------VCSGACLSAVDAHSQVCSILW 248
Query: 653 AP 654
+P
Sbjct: 249 SP 250
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVR-KLTFI 635
L H + +T V +P LAT+S D+TV++WD VR K +F+
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 291
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVR-KLTFI 635
L H + +T V +P LAT+S D+TV++WD VR K +F+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVR-KLTFI 635
L H + +T V +P LAT+S D+TV++WD VR K +F+
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 623 VWDTEN 628
+WD N
Sbjct: 100 LWDVSN 105
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS 242
Query: 622 RVWDTENVRKL 632
+ D ++ L
Sbjct: 243 FLVDVSTLQVL 253
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 619
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 620 TVRVWDTENVRK 631
T+++W + V K
Sbjct: 166 TIKLWQNDKVIK 177
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633
+ W+ + F+ S L ++ D +R WD + ++T
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 337
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633
+ W+ + F+ S L ++ D +R WD + ++T
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVR 630
H +T F+P L ATSS D TV++WD N++
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVR 630
H +T F+P L ATSS D TV++WD N++
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 237
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 619
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 620 TVRVWDTENV 629
+ V +N+
Sbjct: 329 KIEVQTLQNL 338
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 549 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 605 F--SPSLSRLATSSADRTVRVWDTE 627
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 563 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 618 DRTVRVWD 625
D+T ++WD
Sbjct: 107 DKTAKMWD 114
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
IPA ++V SPDG++L+T D+ W
Sbjct: 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 615 S---SADRTVRVWD 625
+ + D+ + W+
Sbjct: 277 TGGGTMDKQIHFWN 290
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV 623
VR++P+ + A S R + +
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISI 122
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
L+EH +T V ++P +R+ T DR VW
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV 623
VR++P+ + A S R + +
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,802,349
Number of Sequences: 62578
Number of extensions: 553696
Number of successful extensions: 1294
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 377
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)