Query 006229
Match_columns 655
No_of_seqs 487 out of 2678
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 20:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 99.9 1.3E-21 2.9E-26 206.0 12.5 176 471-654 186-397 (459)
2 KOG0272 U4/U6 small nuclear ri 99.9 1.9E-21 4.1E-26 204.8 12.3 173 473-648 232-439 (459)
3 KOG0263 Transcription initiati 99.8 8.5E-21 1.8E-25 212.4 13.1 163 469-655 460-630 (707)
4 KOG0279 G protein beta subunit 99.8 9.2E-20 2E-24 184.1 17.5 175 471-655 27-244 (315)
5 KOG0271 Notchless-like WD40 re 99.8 3.9E-20 8.5E-25 192.9 14.7 178 473-655 218-462 (480)
6 KOG0266 WD40 repeat-containing 99.8 7.7E-19 1.7E-23 196.1 19.4 166 469-655 168-345 (456)
7 KOG0286 G-protein beta subunit 99.8 1.5E-18 3.2E-23 176.4 18.2 179 469-653 64-282 (343)
8 KOG0263 Transcription initiati 99.8 8.8E-19 1.9E-23 196.3 16.1 142 470-630 503-652 (707)
9 KOG0271 Notchless-like WD40 re 99.8 1.2E-18 2.7E-23 181.8 13.3 161 469-648 124-297 (480)
10 KOG0285 Pleiotropic regulator 99.8 1.3E-18 2.9E-23 180.3 12.7 143 500-645 157-325 (460)
11 KOG0645 WD40 repeat protein [G 99.8 2.5E-17 5.3E-22 166.1 18.7 160 473-654 28-205 (312)
12 KOG0284 Polyadenylation factor 99.8 1.2E-18 2.5E-23 183.3 9.1 162 469-654 147-316 (464)
13 KOG0319 WD40-repeat-containing 99.8 1E-17 2.2E-22 186.4 16.4 175 471-648 376-598 (775)
14 KOG0281 Beta-TrCP (transducin 99.8 5E-19 1.1E-23 182.7 5.5 170 473-646 208-407 (499)
15 KOG0273 Beta-transducin family 99.7 2E-17 4.2E-22 176.6 16.9 179 469-655 244-463 (524)
16 KOG0295 WD40 repeat-containing 99.7 1.1E-17 2.4E-22 173.9 13.7 170 473-645 163-382 (406)
17 KOG0315 G-protein beta subunit 99.7 6.2E-17 1.3E-21 161.6 17.2 178 469-646 92-307 (311)
18 PTZ00421 coronin; Provisional 99.7 1.3E-16 2.8E-21 179.4 21.6 122 507-640 89-211 (493)
19 KOG0286 G-protein beta subunit 99.7 1.1E-16 2.4E-21 162.8 16.7 154 481-655 57-240 (343)
20 KOG0266 WD40 repeat-containing 99.7 1.5E-16 3.3E-21 177.7 18.8 154 469-641 212-378 (456)
21 KOG0276 Vesicle coat complex C 99.7 5.3E-17 1.1E-21 177.8 13.2 169 480-655 33-238 (794)
22 KOG0319 WD40-repeat-containing 99.7 1.1E-16 2.5E-21 178.1 15.3 144 503-646 374-554 (775)
23 KOG0283 WD40 repeat-containing 99.7 5.9E-17 1.3E-21 183.0 12.8 147 501-655 274-462 (712)
24 KOG0279 G protein beta subunit 99.7 3E-16 6.5E-21 158.8 16.0 132 506-655 28-159 (315)
25 KOG0275 Conserved WD40 repeat- 99.7 2.6E-17 5.5E-22 168.8 6.7 153 468-639 221-390 (508)
26 KOG1407 WD40 repeat protein [F 99.7 4.7E-16 1E-20 156.3 15.0 107 543-655 177-283 (313)
27 PTZ00420 coronin; Provisional 99.7 2.1E-15 4.5E-20 171.4 21.5 125 506-642 87-212 (568)
28 KOG0281 Beta-TrCP (transducin 99.7 7.2E-17 1.6E-21 166.9 7.6 150 473-629 248-430 (499)
29 KOG0284 Polyadenylation factor 99.7 1.4E-16 3E-21 167.7 9.2 130 501-655 145-275 (464)
30 KOG0645 WD40 repeat protein [G 99.6 3.6E-15 7.8E-20 150.6 17.0 129 506-655 27-161 (312)
31 KOG0315 G-protein beta subunit 99.6 1.3E-15 2.8E-20 152.2 13.7 105 546-655 74-178 (311)
32 KOG0973 Histone transcription 99.6 1.7E-15 3.8E-20 174.9 16.1 154 501-655 76-230 (942)
33 KOG0273 Beta-transducin family 99.6 2.2E-15 4.8E-20 161.1 15.5 121 501-640 366-495 (524)
34 KOG0291 WD40-repeat-containing 99.6 2.8E-15 6.1E-20 167.3 16.7 151 480-655 328-531 (893)
35 KOG0276 Vesicle coat complex C 99.6 7.2E-16 1.6E-20 169.0 11.3 146 473-637 110-267 (794)
36 KOG0308 Conserved WD40 repeat- 99.6 3.9E-15 8.4E-20 164.1 16.3 166 473-647 86-263 (735)
37 KOG0274 Cdc4 and related F-box 99.6 3.3E-15 7.2E-20 169.0 15.1 167 473-645 219-419 (537)
38 KOG0318 WD40 repeat stress pro 99.6 8.6E-15 1.9E-19 158.3 17.4 113 509-640 163-278 (603)
39 KOG0291 WD40-repeat-containing 99.6 5.2E-15 1.1E-19 165.2 16.0 165 469-637 359-560 (893)
40 KOG0295 WD40 repeat-containing 99.6 3.4E-15 7.4E-20 155.6 13.5 177 470-654 118-344 (406)
41 KOG0647 mRNA export protein (c 99.6 8.7E-15 1.9E-19 149.7 15.2 142 470-643 18-161 (347)
42 KOG0289 mRNA splicing factor [ 99.6 1.1E-14 2.4E-19 154.4 16.1 166 473-639 232-431 (506)
43 KOG0265 U5 snRNP-specific prot 99.6 2.8E-14 6.2E-19 145.8 16.6 179 469-655 99-319 (338)
44 KOG0264 Nucleosome remodeling 99.6 1.4E-14 3E-19 154.6 14.7 132 507-655 191-327 (422)
45 KOG0277 Peroxisomal targeting 99.6 2.2E-14 4.8E-19 143.9 14.8 158 473-654 74-244 (311)
46 KOG0265 U5 snRNP-specific prot 99.6 2.8E-14 6E-19 145.9 15.5 182 469-655 56-277 (338)
47 KOG0292 Vesicle coat complex C 99.6 6.3E-15 1.4E-19 166.5 11.4 131 501-655 16-146 (1202)
48 PTZ00421 coronin; Provisional 99.6 7.4E-14 1.6E-18 157.3 19.9 141 471-630 87-248 (493)
49 KOG0282 mRNA splicing factor [ 99.6 2.5E-15 5.5E-20 161.1 7.7 117 503-638 224-341 (503)
50 KOG0316 Conserved WD40 repeat- 99.6 2.2E-14 4.8E-19 142.5 12.6 110 507-635 30-141 (307)
51 KOG0285 Pleiotropic regulator 99.6 2.9E-14 6.2E-19 148.4 13.6 174 471-648 162-369 (460)
52 cd00200 WD40 WD40 domain, foun 99.6 2.9E-13 6.3E-18 133.9 19.7 159 473-655 22-188 (289)
53 PTZ00420 coronin; Provisional 99.5 1.4E-13 3.1E-18 156.5 19.2 134 511-655 35-178 (568)
54 KOG0292 Vesicle coat complex C 99.5 9.4E-14 2E-18 157.1 17.2 172 472-643 105-296 (1202)
55 KOG4594 Sequence-specific sing 99.5 3.5E-15 7.6E-20 150.5 5.3 77 4-81 12-92 (354)
56 KOG0277 Peroxisomal targeting 99.5 3.9E-14 8.5E-19 142.1 12.6 122 504-643 71-194 (311)
57 KOG0643 Translation initiation 99.5 9.1E-14 2E-18 140.3 15.2 171 470-640 20-233 (327)
58 cd00200 WD40 WD40 domain, foun 99.5 3.8E-13 8.3E-18 133.0 19.1 159 473-655 64-230 (289)
59 KOG0313 Microtubule binding pr 99.5 9E-14 2E-18 145.7 14.9 172 474-646 161-396 (423)
60 KOG0264 Nucleosome remodeling 99.5 8E-14 1.7E-18 148.9 14.3 139 473-628 191-348 (422)
61 KOG0640 mRNA cleavage stimulat 99.5 4.8E-14 1E-18 144.5 12.1 173 466-638 118-346 (430)
62 PLN00181 protein SPA1-RELATED; 99.5 2.8E-13 6.1E-18 161.1 20.6 180 473-655 546-774 (793)
63 KOG0772 Uncharacterized conser 99.5 1.3E-14 2.9E-19 156.4 8.3 131 507-655 282-420 (641)
64 KOG0303 Actin-binding protein 99.5 8E-14 1.7E-18 146.7 13.0 120 507-639 95-215 (472)
65 PLN00181 protein SPA1-RELATED; 99.5 3.7E-13 8E-18 160.1 20.5 154 470-643 493-665 (793)
66 KOG0316 Conserved WD40 repeat- 99.5 1.8E-13 4E-18 136.1 14.5 158 470-655 27-194 (307)
67 KOG0274 Cdc4 and related F-box 99.5 6.4E-14 1.4E-18 158.6 12.6 168 472-645 261-460 (537)
68 KOG0306 WD40-repeat-containing 99.5 9.4E-14 2E-18 155.2 13.1 161 469-648 463-643 (888)
69 KOG0269 WD40 repeat-containing 99.5 7.2E-14 1.6E-18 156.6 12.2 160 473-655 101-274 (839)
70 KOG0643 Translation initiation 99.5 3.1E-13 6.7E-18 136.5 15.4 125 507-655 23-201 (327)
71 KOG0973 Histone transcription 99.5 9.2E-14 2E-18 160.8 12.9 142 501-654 20-181 (942)
72 KOG0267 Microtubule severing p 99.5 1.9E-14 4.2E-19 160.1 7.1 134 497-654 73-206 (825)
73 KOG0267 Microtubule severing p 99.5 3.3E-14 7.2E-19 158.3 8.4 159 473-655 83-249 (825)
74 KOG0318 WD40 repeat stress pro 99.5 7.4E-13 1.6E-17 143.5 18.3 157 494-655 59-246 (603)
75 KOG0302 Ribosome Assembly prot 99.5 1.5E-13 3.2E-18 144.1 12.0 139 480-654 212-357 (440)
76 KOG0313 Microtubule binding pr 99.5 2.3E-13 5E-18 142.7 13.4 121 506-627 271-418 (423)
77 KOG0288 WD40 repeat protein Ti 99.5 3.7E-13 8.1E-18 142.3 15.1 180 468-655 227-442 (459)
78 KOG0640 mRNA cleavage stimulat 99.5 3.9E-13 8.5E-18 137.9 12.4 141 480-637 113-301 (430)
79 KOG0641 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 128.8 15.9 104 546-655 174-284 (350)
80 KOG1539 WD repeat protein [Gen 99.5 2.7E-13 5.9E-18 153.1 12.0 183 402-627 458-648 (910)
81 KOG0301 Phospholipase A2-activ 99.4 9.7E-13 2.1E-17 146.3 15.1 159 473-640 72-260 (745)
82 KOG0305 Anaphase promoting com 99.4 6E-13 1.3E-17 147.1 12.8 150 498-655 221-398 (484)
83 KOG0310 Conserved WD40 repeat- 99.4 1.5E-12 3.3E-17 140.2 15.2 160 468-648 76-247 (487)
84 KOG0282 mRNA splicing factor [ 99.4 9.3E-14 2E-18 149.2 5.8 104 546-655 205-310 (503)
85 KOG0294 WD40 repeat-containing 99.4 9.3E-13 2E-17 135.6 12.7 112 505-635 52-165 (362)
86 KOG4283 Transcription-coupled 99.4 1.8E-12 4E-17 132.3 14.2 128 507-654 115-256 (397)
87 KOG0310 Conserved WD40 repeat- 99.4 7.4E-13 1.6E-17 142.6 11.6 120 501-639 75-197 (487)
88 KOG0302 Ribosome Assembly prot 99.4 1.2E-12 2.5E-17 137.4 11.9 104 507-627 271-378 (440)
89 KOG0300 WD40 repeat-containing 99.4 1.4E-12 3E-17 134.1 11.7 174 473-646 161-364 (481)
90 KOG1445 Tumor-specific antigen 99.4 4.4E-13 9.5E-18 147.2 8.5 111 507-629 641-752 (1012)
91 KOG1009 Chromatin assembly com 99.4 2.7E-12 5.8E-17 135.8 14.0 132 508-654 28-175 (434)
92 KOG0283 WD40 repeat-containing 99.4 2.4E-12 5.2E-17 146.1 14.5 112 503-635 377-489 (712)
93 KOG0306 WD40-repeat-containing 99.4 1.5E-12 3.2E-17 145.8 12.5 141 469-628 517-665 (888)
94 KOG0646 WD40 repeat protein [G 99.4 2.6E-12 5.6E-17 137.8 13.5 156 473-638 94-318 (476)
95 KOG0293 WD40 repeat-containing 99.4 2E-12 4.4E-17 136.8 12.0 124 474-628 219-343 (519)
96 KOG1273 WD40 repeat protein [G 99.4 1.1E-12 2.4E-17 135.0 8.9 91 558-654 26-116 (405)
97 KOG0278 Serine/threonine kinas 99.4 1.8E-12 3.9E-17 129.9 9.8 159 469-631 109-301 (334)
98 KOG0293 WD40 repeat-containing 99.4 8.4E-13 1.8E-17 139.6 7.6 108 544-655 213-323 (519)
99 KOG0308 Conserved WD40 repeat- 99.4 9.2E-12 2E-16 137.8 15.5 140 471-629 129-287 (735)
100 KOG0269 WD40 repeat-containing 99.4 3E-12 6.5E-17 143.9 11.3 160 466-643 140-313 (839)
101 KOG0772 Uncharacterized conser 99.3 5E-12 1.1E-16 136.8 12.5 162 473-655 282-468 (641)
102 KOG0299 U3 snoRNP-associated p 99.3 1.6E-12 3.6E-17 139.1 8.5 143 501-646 149-293 (479)
103 KOG1407 WD40 repeat protein [F 99.3 4.4E-12 9.6E-17 127.9 11.0 128 482-641 23-233 (313)
104 KOG0641 WD40 repeat protein [G 99.3 1.6E-11 3.5E-16 121.6 14.4 132 507-655 195-330 (350)
105 KOG2394 WD40 protein DMR-N9 [G 99.3 7.3E-12 1.6E-16 136.2 12.6 103 547-654 282-384 (636)
106 KOG1332 Vesicle coat complex C 99.3 5.2E-12 1.1E-16 126.4 10.4 142 470-627 68-241 (299)
107 KOG0275 Conserved WD40 repeat- 99.3 6E-12 1.3E-16 129.7 10.9 155 469-642 272-482 (508)
108 KOG1539 WD repeat protein [Gen 99.3 1.2E-11 2.7E-16 139.9 14.3 161 473-655 413-628 (910)
109 KOG1274 WD40 repeat protein [G 99.3 1.3E-11 2.8E-16 141.1 14.6 137 473-628 67-263 (933)
110 KOG0299 U3 snoRNP-associated p 99.3 2.1E-11 4.6E-16 130.7 15.4 181 468-655 210-436 (479)
111 KOG0300 WD40 repeat-containing 99.3 1.5E-11 3.2E-16 126.6 13.3 129 488-637 267-397 (481)
112 KOG0296 Angio-associated migra 99.3 3.1E-11 6.7E-16 126.4 15.9 143 481-645 54-196 (399)
113 KOG0296 Angio-associated migra 99.3 5.3E-11 1.1E-15 124.7 17.0 146 472-636 76-229 (399)
114 KOG4283 Transcription-coupled 99.3 1.9E-11 4.2E-16 124.9 12.8 140 473-631 115-280 (397)
115 KOG1446 Histone H3 (Lys4) meth 99.3 4E-11 8.7E-16 123.8 15.1 122 502-642 22-145 (311)
116 KOG1034 Transcriptional repres 99.3 6.1E-12 1.3E-16 130.2 8.9 96 532-630 115-214 (385)
117 KOG1446 Histone H3 (Lys4) meth 99.3 1.3E-10 2.7E-15 120.1 17.8 157 479-638 88-273 (311)
118 KOG0301 Phospholipase A2-activ 99.3 2.6E-11 5.6E-16 135.2 13.2 164 473-646 26-226 (745)
119 KOG0639 Transducin-like enhanc 99.3 6.8E-12 1.5E-16 135.3 8.4 116 501-633 472-587 (705)
120 KOG0270 WD40 repeat-containing 99.3 1E-11 2.3E-16 132.5 9.4 122 504-629 190-319 (463)
121 KOG1274 WD40 repeat protein [G 99.3 5.2E-11 1.1E-15 136.2 14.8 103 553-655 94-199 (933)
122 KOG2445 Nuclear pore complex c 99.3 8.4E-11 1.8E-15 121.0 14.8 118 501-633 20-150 (361)
123 KOG0647 mRNA export protein (c 99.3 1.9E-10 4.1E-15 118.2 17.1 162 473-654 41-261 (347)
124 KOG0642 Cell-cycle nuclear pro 99.2 2.6E-11 5.6E-16 132.7 10.9 120 501-631 301-430 (577)
125 KOG1332 Vesicle coat complex C 99.2 4E-11 8.6E-16 120.2 11.3 133 501-654 18-159 (299)
126 KOG0288 WD40 repeat protein Ti 99.2 1.9E-12 4.2E-17 137.0 2.0 119 505-640 186-304 (459)
127 KOG0294 WD40 repeat-containing 99.2 6.3E-11 1.4E-15 122.3 12.2 133 509-655 4-138 (362)
128 KOG0649 WD40 repeat protein [G 99.2 1.1E-10 2.3E-15 117.0 13.2 130 503-639 69-198 (325)
129 KOG0289 mRNA splicing factor [ 99.2 1.7E-10 3.6E-15 123.1 15.5 131 496-645 349-482 (506)
130 KOG0646 WD40 repeat protein [G 99.2 8.8E-11 1.9E-15 126.2 13.3 118 503-639 90-218 (476)
131 KOG0278 Serine/threonine kinas 99.2 2.7E-11 5.8E-16 121.6 8.1 104 531-638 80-184 (334)
132 KOG1273 WD40 repeat protein [G 99.2 1.7E-10 3.7E-15 119.0 12.4 121 500-639 29-195 (405)
133 KOG1408 WD40 repeat protein [F 99.2 2.9E-10 6.3E-15 126.9 14.6 88 558-645 599-689 (1080)
134 KOG2096 WD40 repeat protein [G 99.2 2.1E-10 4.5E-15 118.6 12.3 168 472-655 199-384 (420)
135 KOG4328 WD40 protein [Function 99.2 1.1E-10 2.3E-15 125.3 9.7 153 473-627 201-399 (498)
136 KOG0268 Sof1-like rRNA process 99.2 7E-11 1.5E-15 123.7 8.1 87 546-634 263-352 (433)
137 KOG0270 WD40 repeat-containing 99.1 5.3E-10 1.1E-14 119.7 14.6 159 470-647 190-381 (463)
138 KOG1063 RNA polymerase II elon 99.1 1.5E-10 3.2E-15 129.1 10.5 107 545-654 562-674 (764)
139 KOG0639 Transducin-like enhanc 99.1 3.3E-10 7.2E-15 122.5 12.2 151 469-638 474-674 (705)
140 KOG0771 Prolactin regulatory e 99.1 6.7E-10 1.5E-14 118.4 14.3 129 503-655 153-335 (398)
141 KOG1036 Mitotic spindle checkp 99.1 3.7E-10 8.1E-15 116.4 11.5 110 507-638 26-135 (323)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.1E-09 6.7E-14 108.9 17.0 110 507-637 2-113 (300)
143 KOG0305 Anaphase promoting com 99.1 7.3E-10 1.6E-14 122.9 13.0 153 473-629 271-463 (484)
144 PF08662 eIF2A: Eukaryotic tra 99.1 3.7E-09 8.1E-14 105.3 16.7 116 481-635 61-186 (194)
145 KOG0307 Vesicle coat complex C 99.1 8.2E-10 1.8E-14 129.1 13.2 174 473-654 81-306 (1049)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 6.2E-09 1.3E-13 106.7 17.5 90 558-654 209-300 (300)
147 KOG1036 Mitotic spindle checkp 99.0 3.8E-09 8.2E-14 109.0 15.5 135 473-631 26-167 (323)
148 KOG0290 Conserved WD40 repeat- 99.0 1.7E-09 3.6E-14 110.8 12.2 107 507-629 164-320 (364)
149 KOG1009 Chromatin assembly com 99.0 1.2E-09 2.7E-14 115.9 10.9 153 474-629 28-197 (434)
150 KOG2096 WD40 repeat protein [G 99.0 1.5E-09 3.3E-14 112.3 11.0 105 503-627 196-308 (420)
151 KOG2919 Guanine nucleotide-bin 99.0 1.9E-09 4.1E-14 111.8 11.1 75 553-627 205-281 (406)
152 KOG0307 Vesicle coat complex C 99.0 4.1E-10 9E-15 131.6 6.8 148 481-655 66-217 (1049)
153 KOG0644 Uncharacterized conser 99.0 1.8E-10 3.9E-15 130.4 3.4 103 502-627 198-300 (1113)
154 PF08662 eIF2A: Eukaryotic tra 99.0 1.7E-08 3.7E-13 100.6 17.1 91 555-655 59-154 (194)
155 KOG4378 Nuclear protein COP1 [ 99.0 4.8E-09 1E-13 113.6 13.8 124 507-654 178-303 (673)
156 KOG0268 Sof1-like rRNA process 99.0 2.9E-09 6.2E-14 111.8 11.0 154 473-631 80-306 (433)
157 KOG4328 WD40 protein [Function 99.0 3.2E-09 6.9E-14 114.2 11.0 133 507-655 201-380 (498)
158 KOG0322 G-protein beta subunit 99.0 2.4E-09 5.2E-14 108.5 9.5 71 556-626 252-322 (323)
159 KOG0303 Actin-binding protein 98.9 1.2E-09 2.6E-14 115.6 7.3 94 549-643 75-177 (472)
160 KOG0644 Uncharacterized conser 98.9 1.6E-10 3.4E-15 130.8 0.3 104 546-654 181-284 (1113)
161 COG2319 FOG: WD40 repeat [Gene 98.9 2.4E-08 5.3E-13 102.9 16.2 96 546-641 146-244 (466)
162 KOG0321 WD40 repeat-containing 98.9 6.1E-09 1.3E-13 115.7 12.3 112 503-631 109-252 (720)
163 COG2319 FOG: WD40 repeat [Gene 98.9 7.6E-08 1.6E-12 99.2 19.1 151 479-654 131-294 (466)
164 KOG2394 WD40 protein DMR-N9 [G 98.9 3E-09 6.5E-14 116.2 8.7 110 501-629 297-454 (636)
165 KOG1408 WD40 repeat protein [F 98.9 6.2E-09 1.3E-13 116.5 11.3 112 501-628 603-714 (1080)
166 KOG1007 WD repeat protein TSSC 98.9 6.8E-09 1.5E-13 106.4 10.2 97 530-628 191-290 (370)
167 KOG2110 Uncharacterized conser 98.9 1.4E-08 3.1E-13 107.0 12.7 100 553-655 127-229 (391)
168 KOG2048 WD40 repeat protein [G 98.9 4.2E-08 9.1E-13 109.8 16.2 98 535-635 93-192 (691)
169 KOG1524 WD40 repeat-containing 98.9 4.8E-09 1E-13 114.4 8.4 104 546-655 95-238 (737)
170 KOG1445 Tumor-specific antigen 98.9 5.7E-09 1.2E-13 115.4 9.1 123 505-641 91-215 (1012)
171 KOG1188 WD40 repeat protein [G 98.8 1.6E-08 3.5E-13 105.7 11.4 108 505-629 83-198 (376)
172 KOG0290 Conserved WD40 repeat- 98.8 3E-08 6.4E-13 101.9 12.9 83 553-635 148-235 (364)
173 KOG0642 Cell-cycle nuclear pro 98.8 1.9E-08 4.1E-13 110.6 11.7 170 471-640 355-574 (577)
174 KOG1063 RNA polymerase II elon 98.8 5E-09 1.1E-13 117.2 6.7 109 545-655 515-629 (764)
175 KOG4378 Nuclear protein COP1 [ 98.8 2.3E-08 5E-13 108.4 11.5 157 475-655 50-219 (673)
176 KOG0321 WD40 repeat-containing 98.8 1.1E-08 2.5E-13 113.6 8.5 112 504-628 62-176 (720)
177 KOG2445 Nuclear pore complex c 98.8 3.5E-08 7.6E-13 102.0 11.2 104 552-655 10-123 (361)
178 KOG1310 WD40 repeat protein [G 98.8 8.2E-09 1.8E-13 112.9 6.5 82 547-628 42-126 (758)
179 KOG2048 WD40 repeat protein [G 98.8 8.6E-08 1.9E-12 107.4 14.3 158 473-648 81-254 (691)
180 KOG2110 Uncharacterized conser 98.8 7.2E-08 1.6E-12 101.8 12.9 85 544-628 162-249 (391)
181 KOG1310 WD40 repeat protein [G 98.7 2.7E-08 5.9E-13 108.9 9.5 113 483-629 54-180 (758)
182 KOG0771 Prolactin regulatory e 98.7 1.1E-08 2.5E-13 109.1 6.0 77 559-636 148-224 (398)
183 KOG0974 WD-repeat protein WDR6 98.7 6.9E-08 1.5E-12 112.4 12.2 114 503-638 142-256 (967)
184 KOG1538 Uncharacterized conser 98.7 1.8E-07 3.8E-12 104.4 14.4 137 481-655 14-187 (1081)
185 KOG0649 WD40 repeat protein [G 98.7 3.2E-07 7E-12 92.4 14.8 101 532-638 136-246 (325)
186 KOG4227 WD40 repeat protein [G 98.7 9.7E-08 2.1E-12 101.1 11.1 138 501-654 63-204 (609)
187 PF00400 WD40: WD domain, G-be 98.7 6.3E-08 1.4E-12 70.4 6.4 39 587-625 1-39 (39)
188 KOG2139 WD40 repeat protein [G 98.7 4.2E-07 9.1E-12 95.8 14.8 90 547-637 188-279 (445)
189 KOG3914 WD repeat protein WDR4 98.7 1.2E-07 2.7E-12 100.9 10.9 87 550-637 146-233 (390)
190 KOG1523 Actin-related protein 98.6 2.1E-07 4.5E-12 96.8 11.9 144 480-655 11-157 (361)
191 KOG2111 Uncharacterized conser 98.6 1.7E-07 3.7E-12 97.4 10.9 80 549-628 175-257 (346)
192 KOG1272 WD40-repeat-containing 98.6 5.8E-08 1.3E-12 104.8 7.3 140 479-637 188-333 (545)
193 KOG1034 Transcriptional repres 98.6 1.6E-07 3.4E-12 98.0 9.6 100 554-655 88-192 (385)
194 KOG2055 WD40 repeat protein [G 98.6 7.1E-07 1.5E-11 96.5 14.0 152 471-640 224-387 (514)
195 KOG1524 WD40 repeat-containing 98.6 5.9E-07 1.3E-11 98.5 13.5 153 474-630 77-258 (737)
196 KOG1523 Actin-related protein 98.6 3.1E-07 6.7E-12 95.6 10.8 110 501-626 62-175 (361)
197 KOG2111 Uncharacterized conser 98.5 1.8E-06 3.9E-11 90.0 14.7 87 566-655 147-237 (346)
198 KOG1517 Guanine nucleotide bin 98.5 8.3E-07 1.8E-11 103.6 13.4 163 474-654 1179-1361(1387)
199 KOG2055 WD40 repeat protein [G 98.5 3.9E-07 8.6E-12 98.4 10.1 142 473-627 357-512 (514)
200 KOG1188 WD40 repeat protein [G 98.5 4.2E-07 9.1E-12 95.3 9.9 126 507-655 41-176 (376)
201 KOG3881 Uncharacterized conser 98.5 1.8E-06 3.8E-11 92.0 13.6 91 545-635 237-328 (412)
202 KOG0322 G-protein beta subunit 98.5 1.4E-06 3E-11 88.8 12.1 97 554-655 149-304 (323)
203 KOG1272 WD40-repeat-containing 98.5 2.8E-07 6.1E-12 99.6 7.5 129 501-654 258-389 (545)
204 KOG0650 WD40 repeat nucleolar 98.5 7.1E-07 1.5E-11 99.0 10.4 82 544-626 389-471 (733)
205 KOG1007 WD repeat protein TSSC 98.5 9.4E-07 2E-11 91.0 10.5 103 507-627 228-361 (370)
206 PF00400 WD40: WD domain, G-be 98.5 5.6E-07 1.2E-11 65.3 6.6 38 546-583 2-39 (39)
207 KOG0974 WD-repeat protein WDR6 98.5 6.5E-07 1.4E-11 104.5 10.5 135 473-628 146-289 (967)
208 PF08513 LisH: LisH; InterPro 98.5 2.1E-07 4.5E-12 63.3 3.9 27 10-36 1-27 (27)
209 KOG1538 Uncharacterized conser 98.5 3.8E-07 8.2E-12 101.8 8.2 70 557-627 14-83 (1081)
210 KOG1240 Protein kinase contain 98.4 3.9E-06 8.4E-11 99.5 16.2 125 501-637 1056-1235(1431)
211 KOG4227 WD40 repeat protein [G 98.4 5.6E-07 1.2E-11 95.5 8.2 91 549-639 50-147 (609)
212 KOG2106 Uncharacterized conser 98.4 3.5E-06 7.7E-11 92.0 14.3 125 503-655 377-502 (626)
213 KOG0650 WD40 repeat nucleolar 98.4 6.2E-07 1.3E-11 99.4 8.7 126 481-624 586-732 (733)
214 KOG4547 WD40 repeat-containing 98.4 5.1E-06 1.1E-10 92.4 15.4 95 552-648 99-193 (541)
215 KOG2919 Guanine nucleotide-bin 98.4 2.3E-06 5E-11 89.3 11.6 149 485-655 55-218 (406)
216 KOG1517 Guanine nucleotide bin 98.4 2.1E-06 4.6E-11 100.2 11.8 98 529-629 1184-1289(1387)
217 PRK01742 tolB translocation pr 98.4 5.7E-06 1.2E-10 92.1 14.7 69 558-627 250-322 (429)
218 KOG1963 WD40 repeat protein [G 98.3 4.3E-06 9.3E-11 96.4 12.3 125 497-637 208-332 (792)
219 PRK01742 tolB translocation pr 98.3 4.2E-06 9.1E-11 93.1 11.9 88 559-654 336-425 (429)
220 KOG0280 Uncharacterized conser 98.3 6.1E-06 1.3E-10 85.3 11.8 105 545-655 155-264 (339)
221 PF02239 Cytochrom_D1: Cytochr 98.2 2.6E-05 5.7E-10 85.4 15.9 111 508-638 8-119 (369)
222 KOG1587 Cytoplasmic dynein int 98.2 7.9E-06 1.7E-10 93.2 12.2 81 548-628 391-473 (555)
223 KOG2106 Uncharacterized conser 98.2 6.5E-05 1.4E-09 82.4 17.2 134 471-626 379-520 (626)
224 KOG4547 WD40 repeat-containing 98.2 3E-05 6.6E-10 86.3 15.0 113 508-641 116-238 (541)
225 PRK05137 tolB translocation pr 98.2 5.7E-05 1.2E-09 84.2 17.4 79 552-631 242-326 (435)
226 PRK11028 6-phosphogluconolacto 98.2 5.6E-05 1.2E-09 80.6 16.5 115 502-629 133-260 (330)
227 KOG1587 Cytoplasmic dynein int 98.1 1.9E-05 4.2E-10 90.0 13.3 102 554-655 241-358 (555)
228 PRK11028 6-phosphogluconolacto 98.1 5.3E-05 1.2E-09 80.8 15.5 110 502-628 87-206 (330)
229 KOG4532 WD40-like repeat conta 98.1 7.5E-05 1.6E-09 76.6 14.6 97 558-654 161-260 (344)
230 KOG2315 Predicted translation 98.1 2.6E-05 5.6E-10 86.5 12.1 75 555-632 311-394 (566)
231 PRK05137 tolB translocation pr 98.1 5.6E-05 1.2E-09 84.3 15.1 101 548-655 194-300 (435)
232 KOG2321 WD40 repeat protein [G 98.1 2.6E-05 5.6E-10 86.6 12.0 125 501-639 182-314 (703)
233 KOG4714 Nucleoporin [Nuclear s 98.1 9.8E-06 2.1E-10 82.6 7.9 73 556-628 180-255 (319)
234 PRK02889 tolB translocation pr 98.1 4.8E-05 1E-09 84.7 14.0 82 550-632 278-365 (427)
235 PRK03629 tolB translocation pr 98.1 0.00016 3.4E-09 80.7 18.1 74 557-631 244-323 (429)
236 KOG2695 WD40 repeat protein [G 98.1 1.8E-05 3.9E-10 83.4 9.7 137 501-653 259-401 (425)
237 PRK04922 tolB translocation pr 98.0 0.00021 4.5E-09 79.7 18.4 76 555-631 247-328 (433)
238 KOG1963 WD40 repeat protein [G 98.0 3.2E-05 6.9E-10 89.4 11.5 78 553-630 203-284 (792)
239 PRK03629 tolB translocation pr 98.0 0.00014 3E-09 81.1 16.4 79 552-631 283-367 (429)
240 KOG2139 WD40 repeat protein [G 98.0 8.7E-05 1.9E-09 78.7 13.4 108 475-616 191-299 (445)
241 PRK02889 tolB translocation pr 98.0 0.00017 3.6E-09 80.4 16.5 71 555-626 239-313 (427)
242 PRK04922 tolB translocation pr 98.0 0.00013 2.9E-09 81.3 15.6 82 550-632 286-373 (433)
243 PRK01029 tolB translocation pr 97.9 0.00019 4.1E-09 80.1 14.7 77 556-632 281-364 (428)
244 TIGR02800 propeller_TolB tol-p 97.8 0.00047 1E-08 75.6 16.9 79 553-632 231-315 (417)
245 PF11768 DUF3312: Protein of u 97.8 0.00058 1.3E-08 76.8 17.4 74 553-628 257-330 (545)
246 KOG1240 Protein kinase contain 97.8 7.8E-05 1.7E-09 88.8 10.1 83 546-628 1039-1129(1431)
247 KOG2321 WD40 repeat protein [G 97.8 0.00016 3.5E-09 80.5 11.9 87 549-635 169-266 (703)
248 TIGR02800 propeller_TolB tol-p 97.8 0.00058 1.3E-08 74.9 16.6 78 553-631 275-358 (417)
249 PRK01029 tolB translocation pr 97.8 0.00052 1.1E-08 76.6 16.2 84 551-635 322-411 (428)
250 KOG1064 RAVE (regulator of V-A 97.8 5.8E-05 1.2E-09 92.6 8.9 96 530-637 2313-2408(2439)
251 KOG1409 Uncharacterized conser 97.7 0.00019 4E-09 75.9 10.8 94 547-640 106-241 (404)
252 PRK00178 tolB translocation pr 97.7 0.00088 1.9E-08 74.3 17.0 76 556-632 243-324 (430)
253 smart00320 WD40 WD40 repeats. 97.7 8.4E-05 1.8E-09 50.3 5.6 39 587-625 2-40 (40)
254 PRK00178 tolB translocation pr 97.6 0.00082 1.8E-08 74.5 14.4 83 549-632 192-280 (430)
255 KOG1409 Uncharacterized conser 97.6 0.00045 9.8E-09 73.1 11.4 86 545-630 187-273 (404)
256 KOG1064 RAVE (regulator of V-A 97.6 0.00016 3.5E-09 88.8 8.9 127 503-637 2217-2376(2439)
257 PRK04792 tolB translocation pr 97.6 0.0017 3.6E-08 73.0 16.1 74 558-632 264-343 (448)
258 KOG3881 Uncharacterized conser 97.5 0.0013 2.8E-08 70.7 13.7 122 503-634 158-284 (412)
259 KOG4640 Anaphase-promoting com 97.5 0.00029 6.3E-09 79.4 9.1 95 555-654 20-115 (665)
260 smart00320 WD40 WD40 repeats. 97.5 0.00032 6.9E-09 47.3 5.4 38 546-583 3-40 (40)
261 COG4946 Uncharacterized protei 97.4 0.0045 9.7E-08 68.0 16.5 88 547-634 393-484 (668)
262 KOG4190 Uncharacterized conser 97.4 9.3E-05 2E-09 81.7 3.4 82 547-630 727-815 (1034)
263 KOG0280 Uncharacterized conser 97.4 0.0029 6.2E-08 66.0 13.9 73 557-629 123-198 (339)
264 KOG4190 Uncharacterized conser 97.4 0.00057 1.2E-08 75.7 9.3 117 507-637 748-869 (1034)
265 KOG1334 WD40 repeat protein [G 97.4 0.00037 7.9E-09 76.5 7.7 81 548-628 225-313 (559)
266 KOG1354 Serine/threonine prote 97.4 0.0012 2.5E-08 70.1 10.6 137 503-654 34-223 (433)
267 KOG2315 Predicted translation 97.3 0.0011 2.3E-08 74.0 10.6 91 555-655 270-365 (566)
268 PRK04792 tolB translocation pr 97.3 0.004 8.6E-08 70.0 15.1 80 550-631 300-386 (448)
269 KOG1334 WD40 repeat protein [G 97.3 0.00038 8.3E-09 76.4 5.9 80 550-629 386-468 (559)
270 KOG0309 Conserved WD40 repeat- 97.2 0.00045 9.7E-09 78.9 6.3 105 505-628 126-233 (1081)
271 KOG4532 WD40-like repeat conta 97.2 0.013 2.7E-07 60.7 15.6 84 554-637 202-292 (344)
272 KOG1645 RING-finger-containing 97.2 0.00075 1.6E-08 72.7 6.9 83 547-630 185-269 (463)
273 smart00667 LisH Lissencephaly 97.1 0.00073 1.6E-08 47.3 4.3 31 9-39 3-33 (34)
274 KOG4497 Uncharacterized conser 97.1 0.003 6.4E-08 66.7 10.2 77 555-632 318-396 (447)
275 KOG4497 Uncharacterized conser 97.1 0.0025 5.5E-08 67.2 9.7 95 555-655 48-144 (447)
276 KOG4714 Nucleoporin [Nuclear s 97.1 0.0017 3.7E-08 66.7 8.2 62 507-586 193-255 (319)
277 KOG1354 Serine/threonine prote 97.1 0.0016 3.6E-08 69.0 7.9 127 499-629 218-361 (433)
278 PLN02919 haloacid dehalogenase 97.0 0.01 2.2E-07 73.6 15.6 74 558-631 806-892 (1057)
279 KOG2695 WD40 repeat protein [G 97.0 0.0011 2.5E-08 70.1 6.0 86 554-640 251-345 (425)
280 PF02239 Cytochrom_D1: Cytochr 96.9 0.0061 1.3E-07 66.9 11.4 73 568-640 6-79 (369)
281 COG5170 CDC55 Serine/threonine 96.8 0.0031 6.6E-08 66.2 7.6 42 597-639 280-322 (460)
282 KOG1912 WD40 repeat protein [G 96.8 0.007 1.5E-07 69.9 10.9 97 545-641 45-157 (1062)
283 KOG1275 PAB-dependent poly(A) 96.8 0.0035 7.5E-08 73.4 8.5 76 555-634 177-261 (1118)
284 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.056 1.2E-06 59.0 17.5 77 563-639 53-148 (352)
285 KOG2066 Vacuolar assembly/sort 96.8 0.022 4.7E-07 66.3 14.6 139 476-638 53-198 (846)
286 PF10282 Lactonase: Lactonase, 96.7 0.082 1.8E-06 57.2 18.2 76 557-632 246-329 (345)
287 PLN02919 haloacid dehalogenase 96.7 0.053 1.2E-06 67.3 18.6 78 557-634 741-840 (1057)
288 PF15492 Nbas_N: Neuroblastoma 96.7 0.06 1.3E-06 56.2 15.7 84 554-637 146-269 (282)
289 PF11768 DUF3312: Protein of u 96.7 0.054 1.2E-06 61.4 16.5 91 558-655 208-310 (545)
290 KOG2314 Translation initiation 96.6 0.01 2.2E-07 66.5 10.2 74 554-629 249-336 (698)
291 KOG2041 WD40 repeat protein [G 96.6 0.014 3E-07 66.9 11.2 118 507-629 27-147 (1189)
292 KOG3914 WD repeat protein WDR4 96.6 0.013 2.9E-07 63.3 10.3 128 503-644 71-199 (390)
293 PRK04043 tolB translocation pr 96.5 0.094 2E-06 58.6 17.4 78 554-632 231-314 (419)
294 KOG1275 PAB-dependent poly(A) 96.4 0.017 3.6E-07 68.0 10.5 106 501-627 182-342 (1118)
295 KOG1832 HIV-1 Vpr-binding prot 96.3 0.0036 7.8E-08 73.0 4.7 93 545-637 1091-1186(1516)
296 KOG0309 Conserved WD40 repeat- 96.3 0.0071 1.5E-07 69.5 6.3 101 546-646 105-208 (1081)
297 KOG3617 WD40 and TPR repeat-co 96.3 0.0075 1.6E-07 70.1 6.6 70 558-627 62-131 (1416)
298 KOG4640 Anaphase-promoting com 96.3 0.015 3.3E-07 66.1 8.9 92 481-607 22-115 (665)
299 PRK04043 tolB translocation pr 96.2 0.12 2.7E-06 57.7 16.0 87 558-655 279-378 (419)
300 COG5170 CDC55 Serine/threonine 96.2 0.013 2.8E-07 61.6 7.2 139 501-654 33-231 (460)
301 TIGR02658 TTQ_MADH_Hv methylam 96.1 0.19 4.1E-06 55.0 16.4 78 557-635 249-338 (352)
302 PF10282 Lactonase: Lactonase, 96.1 0.28 6.1E-06 53.1 17.7 86 545-630 76-177 (345)
303 KOG0882 Cyclophilin-related pe 96.1 0.0057 1.2E-07 66.9 4.4 108 504-627 18-174 (558)
304 COG4946 Uncharacterized protei 96.0 0.097 2.1E-06 57.9 13.0 97 553-655 357-454 (668)
305 KOG1912 WD40 repeat protein [G 95.9 0.012 2.6E-07 68.1 6.0 83 558-642 18-112 (1062)
306 KOG0882 Cyclophilin-related pe 95.9 0.019 4.2E-07 62.9 7.3 87 552-638 141-242 (558)
307 KOG3621 WD40 repeat-containing 95.9 0.026 5.7E-07 64.8 8.6 110 501-628 40-155 (726)
308 COG5354 Uncharacterized protei 95.9 0.11 2.5E-06 57.8 13.1 85 553-640 272-362 (561)
309 KOG2066 Vacuolar assembly/sort 95.8 0.046 1E-06 63.7 10.4 92 505-625 48-144 (846)
310 KOG2444 WD40 repeat protein [G 95.6 0.03 6.5E-07 56.9 7.0 106 505-628 69-178 (238)
311 KOG2041 WD40 repeat protein [G 95.6 0.018 3.8E-07 66.1 5.7 74 556-629 15-103 (1189)
312 COG2706 3-carboxymuconate cycl 95.5 0.37 8E-06 51.9 15.0 74 558-632 91-180 (346)
313 TIGR03300 assembly_YfgL outer 95.2 0.33 7.2E-06 52.8 14.0 72 566-639 278-350 (377)
314 PF08450 SGL: SMP-30/Gluconola 95.0 3 6.5E-05 42.5 19.7 72 558-632 42-127 (246)
315 KOG1916 Nuclear protein, conta 94.9 0.025 5.3E-07 66.5 4.3 70 563-632 243-328 (1283)
316 PF14783 BBS2_Mid: Ciliary BBS 94.9 0.28 6E-06 44.8 10.1 65 558-626 2-70 (111)
317 KOG4649 PQQ (pyrrolo-quinoline 94.8 0.48 1E-05 49.3 12.8 79 567-645 63-141 (354)
318 PF12894 Apc4_WD40: Anaphase-p 94.7 0.087 1.9E-06 40.6 5.4 34 597-631 11-44 (47)
319 PF04762 IKI3: IKI3 family; I 94.5 0.47 1E-05 58.2 14.2 99 554-655 208-315 (928)
320 PF15492 Nbas_N: Neuroblastoma 94.4 1.1 2.3E-05 47.2 14.4 71 556-627 44-127 (282)
321 TIGR03300 assembly_YfgL outer 94.4 0.86 1.9E-05 49.5 14.7 107 507-637 66-173 (377)
322 PF08450 SGL: SMP-30/Gluconola 94.3 0.95 2.1E-05 46.1 14.1 91 556-652 134-232 (246)
323 KOG1832 HIV-1 Vpr-binding prot 94.3 0.017 3.7E-07 67.6 1.2 114 498-634 1105-1221(1516)
324 KOG3621 WD40 repeat-containing 94.3 0.12 2.5E-06 59.7 7.8 139 473-627 46-197 (726)
325 PF13360 PQQ_2: PQQ-like domai 94.2 0.78 1.7E-05 45.8 12.9 74 566-639 75-152 (238)
326 KOG2079 Vacuolar assembly/sort 94.2 0.11 2.4E-06 62.3 7.5 70 555-626 130-202 (1206)
327 COG5354 Uncharacterized protei 94.0 0.21 4.6E-06 55.7 8.7 70 556-626 72-159 (561)
328 COG2706 3-carboxymuconate cycl 93.9 2.4 5.1E-05 45.9 16.2 72 558-629 147-223 (346)
329 KOG3598 Thyroid hormone recept 93.5 0.1 2.2E-06 64.0 5.6 7 301-307 2198-2204(2220)
330 PF14655 RAB3GAP2_N: Rab3 GTPa 93.5 0.76 1.6E-05 51.3 12.1 97 544-640 296-411 (415)
331 PF07433 DUF1513: Protein of u 93.3 3.1 6.7E-05 44.6 15.8 87 553-641 160-261 (305)
332 KOG3617 WD40 and TPR repeat-co 93.3 1.5 3.2E-05 52.0 14.1 36 550-585 96-131 (1416)
333 PF13360 PQQ_2: PQQ-like domai 93.3 0.82 1.8E-05 45.7 11.2 68 566-635 35-102 (238)
334 PF08553 VID27: VID27 cytoplas 93.1 1.2 2.5E-05 53.6 13.5 71 554-626 576-646 (794)
335 PF04053 Coatomer_WDAD: Coatom 92.9 0.58 1.2E-05 52.8 10.2 57 567-627 117-173 (443)
336 PF08596 Lgl_C: Lethal giant l 92.8 1.3 2.9E-05 49.1 12.9 83 544-627 75-173 (395)
337 PF12894 Apc4_WD40: Anaphase-p 92.8 0.29 6.3E-06 37.7 5.3 33 555-588 11-43 (47)
338 PF11715 Nup160: Nucleoporin N 92.4 0.93 2E-05 52.2 11.4 73 566-638 157-259 (547)
339 PF14783 BBS2_Mid: Ciliary BBS 92.0 6 0.00013 36.2 13.6 90 507-622 16-109 (111)
340 KOG1008 Uncharacterized conser 92.0 0.058 1.3E-06 61.6 0.8 71 555-628 154-227 (783)
341 KOG2114 Vacuolar assembly/sort 91.9 0.67 1.4E-05 54.9 9.3 68 557-627 27-100 (933)
342 KOG2079 Vacuolar assembly/sort 91.5 0.35 7.7E-06 58.3 6.6 75 567-641 99-174 (1206)
343 KOG1645 RING-finger-containing 91.1 0.24 5.3E-06 54.0 4.3 69 579-653 175-244 (463)
344 PF10168 Nup88: Nuclear pore c 90.9 2.3 5E-05 50.8 12.6 73 556-629 85-181 (717)
345 PF07433 DUF1513: Protein of u 90.8 2.5 5.4E-05 45.3 11.6 61 549-615 50-116 (305)
346 COG3386 Gluconolactonase [Carb 90.7 12 0.00027 40.1 17.0 91 548-639 155-254 (307)
347 KOG2114 Vacuolar assembly/sort 90.7 6.5 0.00014 47.0 15.5 119 507-641 138-258 (933)
348 PF12234 Rav1p_C: RAVE protein 90.7 4 8.7E-05 47.9 14.0 71 556-626 30-103 (631)
349 PF07569 Hira: TUP1-like enhan 90.5 1.5 3.2E-05 44.8 9.3 65 562-627 17-95 (219)
350 KOG1916 Nuclear protein, conta 90.2 0.15 3.3E-06 60.2 2.0 81 558-639 186-282 (1283)
351 KOG4460 Nuclear pore complex, 90.0 3.2 7E-05 47.1 11.8 76 557-632 105-203 (741)
352 KOG2314 Translation initiation 90.0 0.93 2E-05 51.4 7.7 108 500-613 255-362 (698)
353 PF04762 IKI3: IKI3 family; I 89.7 7.1 0.00015 48.2 15.8 83 554-638 74-160 (928)
354 PRK02888 nitrous-oxide reducta 89.2 2.3 5E-05 49.6 10.5 63 565-630 286-354 (635)
355 PF00930 DPPIV_N: Dipeptidyl p 89.1 1.5 3.3E-05 47.6 8.6 67 564-632 1-76 (353)
356 COG0823 TolB Periplasmic compo 88.5 3.1 6.7E-05 46.8 10.7 74 560-634 286-365 (425)
357 PF08596 Lgl_C: Lethal giant l 88.4 6.7 0.00015 43.7 13.2 78 557-635 3-123 (395)
358 PF10313 DUF2415: Uncharacteri 88.3 1.5 3.3E-05 33.2 5.5 31 556-586 1-34 (43)
359 PRK13616 lipoprotein LpqB; Pro 88.1 5.4 0.00012 46.7 12.8 63 557-623 398-472 (591)
360 PF10313 DUF2415: Uncharacteri 88.0 1.7 3.6E-05 33.0 5.6 31 598-628 1-34 (43)
361 PF02897 Peptidase_S9_N: Proly 87.6 2.8 6.1E-05 46.2 9.7 72 558-630 126-213 (414)
362 PRK10350 hypothetical protein; 86.8 2 4.3E-05 39.8 6.4 8 76-83 29-37 (145)
363 PF12234 Rav1p_C: RAVE protein 86.2 6 0.00013 46.5 11.5 72 553-626 70-155 (631)
364 KOG1920 IkappaB kinase complex 85.1 6.7 0.00015 48.4 11.4 67 559-626 199-273 (1265)
365 PRK13616 lipoprotein LpqB; Pro 84.7 5.2 0.00011 46.9 10.3 97 556-655 350-458 (591)
366 PF08553 VID27: VID27 cytoplas 84.7 2.2 4.8E-05 51.3 7.2 59 506-584 588-646 (794)
367 PF08581 Tup_N: Tup N-terminal 84.5 0.17 3.8E-06 43.3 -1.4 57 271-327 6-78 (79)
368 PF06433 Me-amine-dh_H: Methyl 84.5 6.6 0.00014 42.7 10.1 80 559-639 241-332 (342)
369 PRK02888 nitrous-oxide reducta 84.5 9.5 0.00021 44.7 12.0 70 558-628 323-405 (635)
370 KOG2395 Protein involved in va 84.2 4.4 9.5E-05 46.1 8.8 67 558-626 433-499 (644)
371 PF11498 Activator_LAG-3: Tran 83.5 0.35 7.6E-06 51.7 0.0 9 127-135 377-385 (468)
372 KOG4649 PQQ (pyrrolo-quinoline 83.4 18 0.00039 38.0 12.2 71 505-594 62-132 (354)
373 PRK11138 outer membrane biogen 83.1 19 0.00042 39.5 13.5 70 566-637 293-363 (394)
374 KOG1008 Uncharacterized conser 82.6 0.26 5.7E-06 56.5 -1.4 104 507-627 71-184 (783)
375 KOG2444 WD40 repeat protein [G 82.3 3.9 8.5E-05 41.9 6.9 95 474-587 72-179 (238)
376 KOG4499 Ca2+-binding protein R 81.4 17 0.00036 37.8 11.0 54 564-617 220-275 (310)
377 COG3391 Uncharacterized conser 81.1 16 0.00034 40.3 11.9 75 557-632 117-195 (381)
378 PF11498 Activator_LAG-3: Tran 80.4 0.53 1.1E-05 50.4 0.0 6 49-54 276-281 (468)
379 PF06977 SdiA-regulated: SdiA- 80.2 46 0.001 34.7 14.2 100 556-655 65-181 (248)
380 PF15390 DUF4613: Domain of un 80.1 30 0.00065 40.2 13.5 68 560-628 117-187 (671)
381 PF08728 CRT10: CRT10; InterP 80.0 4.8 0.0001 47.8 7.6 113 506-626 114-245 (717)
382 COG0823 TolB Periplasmic compo 79.6 5 0.00011 45.1 7.3 71 559-630 241-317 (425)
383 TIGR02604 Piru_Ver_Nterm putat 79.6 16 0.00035 39.9 11.3 59 556-616 72-142 (367)
384 PF06977 SdiA-regulated: SdiA- 78.7 30 0.00065 36.1 12.3 78 549-627 15-94 (248)
385 PF10647 Gmad1: Lipoprotein Lp 78.6 77 0.0017 32.9 15.4 70 557-626 67-143 (253)
386 PRK11138 outer membrane biogen 78.6 21 0.00044 39.3 11.8 68 567-636 120-187 (394)
387 PF00930 DPPIV_N: Dipeptidyl p 78.1 4.2 9.2E-05 44.1 6.1 71 555-626 42-130 (353)
388 KOG1920 IkappaB kinase complex 77.0 24 0.00053 43.8 12.3 69 556-625 69-137 (1265)
389 PF04053 Coatomer_WDAD: Coatom 74.8 29 0.00063 39.3 11.7 86 557-655 70-155 (443)
390 PF12657 TFIIIC_delta: Transcr 74.8 13 0.00028 36.3 7.9 30 599-628 87-122 (173)
391 KOG2659 LisH motif-containing 72.8 3.4 7.4E-05 42.3 3.4 30 11-40 28-57 (228)
392 PF04841 Vps16_N: Vps16, N-ter 72.6 1E+02 0.0022 34.5 15.3 55 556-610 217-272 (410)
393 PF11715 Nup160: Nucleoporin N 72.4 6.7 0.00015 45.2 6.1 38 556-593 215-256 (547)
394 KOG3522 Predicted guanine nucl 71.2 61 0.0013 39.1 13.3 76 555-634 626-704 (925)
395 PRK10115 protease 2; Provision 70.6 19 0.00042 43.0 9.6 71 557-629 128-209 (686)
396 PF14870 PSII_BNR: Photosynthe 69.3 75 0.0016 34.2 12.7 80 543-625 134-213 (302)
397 TIGR02276 beta_rpt_yvtn 40-res 69.2 21 0.00045 25.6 6.1 31 565-595 1-32 (42)
398 COG3386 Gluconolactonase [Carb 68.2 74 0.0016 34.3 12.5 61 555-616 212-274 (307)
399 KOG3630 Nuclear pore complex, 67.8 12 0.00027 46.0 7.0 71 557-627 157-228 (1405)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.3 1.3E+02 0.0028 34.8 15.2 63 577-640 441-503 (527)
401 PRK13684 Ycf48-like protein; P 66.8 60 0.0013 35.1 11.7 74 555-630 172-246 (334)
402 PF04841 Vps16_N: Vps16, N-ter 66.7 58 0.0013 36.4 11.8 42 597-638 216-257 (410)
403 PF02897 Peptidase_S9_N: Proly 66.2 1.2E+02 0.0026 33.3 14.2 70 560-629 174-262 (414)
404 KOG4499 Ca2+-binding protein R 66.1 55 0.0012 34.1 10.2 85 559-643 161-257 (310)
405 KOG4369 RTK signaling protein 66.0 7.3 0.00016 47.9 4.6 11 144-154 1956-1966(2131)
406 TIGR02604 Piru_Ver_Nterm putat 65.0 72 0.0016 34.9 12.0 70 556-627 14-99 (367)
407 COG3490 Uncharacterized protei 64.9 15 0.00033 39.0 6.2 55 562-616 120-180 (366)
408 KOG0396 Uncharacterized conser 64.7 5.9 0.00013 43.1 3.3 34 5-39 112-145 (389)
409 cd00216 PQQ_DH Dehydrogenases 63.1 73 0.0016 36.3 12.0 32 608-639 405-436 (488)
410 KOG3630 Nuclear pore complex, 63.0 12 0.00025 46.3 5.6 59 555-614 198-260 (1405)
411 TIGR02276 beta_rpt_yvtn 40-res 62.9 35 0.00076 24.3 6.3 34 607-640 1-35 (42)
412 PF10647 Gmad1: Lipoprotein Lp 61.7 89 0.0019 32.4 11.4 93 557-655 25-122 (253)
413 PF07995 GSDH: Glucose / Sorbo 61.1 68 0.0015 34.6 10.8 49 558-608 4-59 (331)
414 PF03178 CPSF_A: CPSF A subuni 59.4 29 0.00062 36.9 7.5 69 554-627 87-157 (321)
415 COG3204 Uncharacterized protei 59.1 1.3E+02 0.0029 32.3 11.9 79 551-630 81-161 (316)
416 PF14583 Pectate_lyase22: Olig 59.0 63 0.0014 35.9 10.0 78 561-639 41-122 (386)
417 COG3391 Uncharacterized conser 58.7 93 0.002 34.3 11.5 79 559-639 77-160 (381)
418 TIGR03606 non_repeat_PQQ dehyd 58.3 1.8E+02 0.0039 33.2 13.7 55 555-609 29-90 (454)
419 PF07676 PD40: WD40-like Beta 56.7 39 0.00085 24.0 5.6 29 554-582 7-38 (39)
420 PF07676 PD40: WD40-like Beta 56.6 36 0.00078 24.2 5.3 31 594-624 5-38 (39)
421 COG3490 Uncharacterized protei 56.6 73 0.0016 34.1 9.4 89 525-615 133-243 (366)
422 KOG2395 Protein involved in va 56.3 57 0.0012 37.6 9.1 78 547-626 368-458 (644)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 55.9 24 0.00053 39.6 6.3 52 589-640 299-350 (415)
424 cd00216 PQQ_DH Dehydrogenases 55.4 1.3E+02 0.0027 34.4 12.2 68 568-637 111-193 (488)
425 PF10477 EIF4E-T: Nucleocytopl 55.0 11 0.00023 44.2 3.4 18 140-157 559-576 (578)
426 PF00780 CNH: CNH domain; Int 54.7 43 0.00093 34.4 7.7 63 566-632 6-69 (275)
427 TIGR03074 PQQ_membr_DH membran 54.3 2.3E+02 0.005 34.5 14.5 71 566-637 259-354 (764)
428 PF07569 Hira: TUP1-like enhan 54.2 19 0.0004 36.8 4.7 30 605-634 18-47 (219)
429 PF08801 Nucleoporin_N: Nup133 54.0 1.2E+02 0.0026 33.7 11.5 31 598-628 190-220 (422)
430 PHA02713 hypothetical protein; 52.4 60 0.0013 37.8 9.1 63 566-630 463-536 (557)
431 TIGR03075 PQQ_enz_alc_DH PQQ-d 52.2 1.6E+02 0.0035 34.1 12.5 68 568-637 121-199 (527)
432 PF03178 CPSF_A: CPSF A subuni 51.0 97 0.0021 32.9 9.8 69 557-627 131-202 (321)
433 PRK10115 protease 2; Provision 50.8 3.1E+02 0.0068 32.9 14.9 68 559-626 175-254 (686)
434 PF00780 CNH: CNH domain; Int 49.9 3E+02 0.0065 28.1 14.0 70 558-628 38-123 (275)
435 PHA02713 hypothetical protein; 48.6 1.6E+02 0.0034 34.4 11.7 61 566-628 398-489 (557)
436 PF10214 Rrn6: RNA polymerase 48.0 82 0.0018 38.2 9.6 75 556-631 146-236 (765)
437 PF15390 DUF4613: Domain of un 47.5 55 0.0012 38.2 7.4 92 556-655 20-123 (671)
438 PF14870 PSII_BNR: Photosynthe 46.4 2.6E+02 0.0056 30.1 12.0 79 554-635 185-268 (302)
439 PF10395 Utp8: Utp8 family; I 46.0 2.5E+02 0.0053 33.6 12.5 30 555-584 129-158 (670)
440 PF05694 SBP56: 56kDa selenium 45.9 2.5E+02 0.0053 32.0 11.9 33 597-629 311-344 (461)
441 PF14761 HPS3_N: Hermansky-Pud 45.0 3E+02 0.0065 28.2 11.5 72 556-628 60-164 (215)
442 KOG2377 Uncharacterized conser 44.8 1.1E+02 0.0023 34.9 8.8 62 554-616 65-130 (657)
443 PF14727 PHTB1_N: PTHB1 N-term 44.1 4.8E+02 0.01 29.4 14.2 58 568-626 146-203 (418)
444 TIGR03074 PQQ_membr_DH membran 43.2 2.3E+02 0.0049 34.6 12.1 70 567-636 194-287 (764)
445 COG4590 ABC-type uncharacteriz 42.9 1.5E+02 0.0033 33.7 9.6 107 508-630 282-389 (733)
446 PF05694 SBP56: 56kDa selenium 42.2 4.3E+02 0.0093 30.1 13.1 77 563-639 137-242 (461)
447 PF08728 CRT10: CRT10; InterP 42.1 3.1E+02 0.0067 33.1 12.7 69 558-627 103-195 (717)
448 PF03088 Str_synth: Strictosid 42.0 2.1E+02 0.0046 25.1 8.7 40 576-616 36-75 (89)
449 PF14761 HPS3_N: Hermansky-Pud 41.8 79 0.0017 32.4 6.8 55 568-624 30-92 (215)
450 PF14781 BBS2_N: Ciliary BBSom 41.8 2.3E+02 0.005 27.0 9.4 69 560-630 3-84 (136)
451 COG5167 VID27 Protein involved 41.6 99 0.0022 35.6 8.1 61 566-627 572-632 (776)
452 TIGR03032 conserved hypothetic 40.6 3.1E+02 0.0067 29.9 11.3 72 566-640 212-303 (335)
453 PF05096 Glu_cyclase_2: Glutam 40.2 4.8E+02 0.01 27.7 12.7 48 545-592 33-83 (264)
454 PF13449 Phytase-like: Esteras 40.2 5E+02 0.011 27.9 15.8 59 558-617 87-166 (326)
455 KOG1900 Nuclear pore complex, 38.9 2E+02 0.0043 36.7 10.7 71 555-628 178-273 (1311)
456 PF05096 Glu_cyclase_2: Glutam 38.9 2.8E+02 0.0061 29.4 10.6 68 568-638 101-168 (264)
457 PF10214 Rrn6: RNA polymerase 37.5 4.3E+02 0.0093 32.1 13.5 131 478-628 144-277 (765)
458 PF12768 Rax2: Cortical protei 37.3 66 0.0014 34.2 5.8 55 576-630 15-75 (281)
459 PF06433 Me-amine-dh_H: Methyl 37.2 1.2E+02 0.0026 33.2 7.8 49 546-595 280-330 (342)
460 KOG2109 WD40 repeat protein [G 37.0 23 0.0005 41.5 2.4 75 544-620 304-391 (788)
461 PF10168 Nup88: Nuclear pore c 36.5 1.5E+02 0.0033 35.8 9.2 34 553-586 144-180 (717)
462 KOG1897 Damage-specific DNA bi 35.0 6.2E+02 0.013 31.7 13.6 109 506-629 548-661 (1096)
463 TIGR03606 non_repeat_PQQ dehyd 34.9 1.5E+02 0.0032 33.8 8.4 35 596-630 28-62 (454)
464 PF09398 FOP_dimer: FOP N term 34.9 53 0.0011 28.4 3.7 31 11-41 20-50 (81)
465 PF12768 Rax2: Cortical protei 34.4 5.5E+02 0.012 27.3 12.2 75 555-630 36-126 (281)
466 KOG3648 Golgi apparatus protei 34.1 44 0.00096 39.0 4.0 20 370-389 73-92 (1179)
467 PF14269 Arylsulfotran_2: Aryl 34.0 1.4E+02 0.003 32.0 7.7 70 557-626 145-219 (299)
468 smart00564 PQQ beta-propeller 31.8 93 0.002 20.9 4.0 25 610-634 7-31 (33)
469 COG1520 FOG: WD40-like repeat 31.5 6E+02 0.013 27.5 12.4 67 566-634 111-178 (370)
470 KOG4659 Uncharacterized conser 31.1 1.7E+02 0.0038 37.3 8.4 125 472-622 535-686 (1899)
471 PF01731 Arylesterase: Arylest 30.4 2E+02 0.0043 25.1 6.7 30 598-627 54-84 (86)
472 PF11635 Med16: Mediator compl 30.3 1.3E+02 0.0029 36.4 7.6 68 555-622 259-345 (753)
473 PF03022 MRJP: Major royal jel 29.4 5.6E+02 0.012 27.1 11.3 80 558-637 3-106 (287)
474 PF14583 Pectate_lyase22: Olig 28.7 4.9E+02 0.011 29.1 10.8 89 507-613 49-140 (386)
475 TIGR03118 PEPCTERM_chp_1 conse 28.5 2.7E+02 0.0058 30.3 8.4 65 561-625 28-116 (336)
476 PF12657 TFIIIC_delta: Transcr 28.4 3.3E+02 0.0071 26.4 8.7 31 556-586 86-122 (173)
477 COG3204 Uncharacterized protei 26.6 1.4E+02 0.0031 32.0 6.0 44 593-636 81-124 (316)
478 KOG1897 Damage-specific DNA bi 26.1 3.8E+02 0.0083 33.4 10.0 69 556-627 830-898 (1096)
479 KOG3616 Selective LIM binding 25.3 1.3E+02 0.0029 36.1 5.8 68 556-626 15-82 (1636)
480 PHA03098 kelch-like protein; P 24.9 4.5E+02 0.0098 30.0 10.4 62 566-629 437-513 (534)
481 KOG2817 Predicted E3 ubiquitin 24.5 97 0.0021 34.4 4.4 37 5-41 111-148 (394)
482 PF07995 GSDH: Glucose / Sorbo 24.2 9.1E+02 0.02 25.9 14.6 75 547-622 245-330 (331)
483 TIGR02608 delta_60_rpt delta-6 24.1 3.1E+02 0.0067 21.9 6.1 19 557-575 2-20 (55)
484 KOG2727 Rab3 GTPase-activating 23.4 1.3E+02 0.0027 37.1 5.3 82 559-640 325-419 (1244)
485 KOG2280 Vacuolar assembly/sort 23.1 2.3E+02 0.005 34.1 7.3 49 577-627 64-112 (829)
486 KOG4369 RTK signaling protein 23.0 90 0.002 39.2 4.1 10 275-285 2014-2023(2131)
487 PHA03098 kelch-like protein; P 22.6 6.4E+02 0.014 28.7 11.0 62 566-629 342-416 (534)
488 KOG4594 Sequence-specific sing 22.4 55 0.0012 34.7 2.0 51 14-67 46-96 (354)
489 PRK13684 Ycf48-like protein; P 22.3 5.9E+02 0.013 27.5 10.1 78 555-635 214-295 (334)
490 COG5276 Uncharacterized conser 22.3 1E+03 0.022 25.9 15.2 70 558-631 131-203 (370)
491 PF01436 NHL: NHL repeat; Int 21.2 1.8E+02 0.0038 19.5 3.7 23 601-623 5-27 (28)
492 PF05935 Arylsulfotrans: Aryls 20.9 8.6E+02 0.019 27.7 11.5 78 560-639 194-313 (477)
493 PF05787 DUF839: Bacterial pro 20.5 2.4E+02 0.0051 32.8 6.8 30 586-615 489-519 (524)
494 COG3823 Glutamine cyclotransfe 20.3 3.5E+02 0.0077 27.9 7.1 71 566-636 55-128 (262)
495 PLN00033 photosystem II stabil 20.2 6.9E+02 0.015 27.9 10.2 69 558-629 241-310 (398)
496 PF01011 PQQ: PQQ enzyme repea 20.1 2.7E+02 0.0058 19.8 4.8 29 611-639 2-30 (38)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.3e-21 Score=205.96 Aligned_cols=176 Identities=24% Similarity=0.279 Sum_probs=131.4
Q ss_pred CCceeccCCCCceEEEEecCCCC--------cccccCcccCCC--CcEEEeccCCCcEEEEecCCCC-------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~--~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
+...+++++.++.+.+|+...-. .-.+....|.+. +.-+++|+.|++|++|......
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 44566666666666666655410 111122234444 2356777777777777443321
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~ 594 (655)
...|...++||+.+. .++--..||...|.+|+|++||.+++|||.|..-||||+++|+++..|.
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~ 342 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA 342 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec
Confidence 112333355555443 5666678999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
||...|.+|.|+|+|-.|||||.|+++||||++..+++.++.+|.+.|. .+.|.|
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS-----~Vk~~p 397 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS-----QVKYSP 397 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh-----heEecc
Confidence 9999999999999999999999999999999999999999999987654 555555
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.9e-21 Score=204.82 Aligned_cols=173 Identities=20% Similarity=0.293 Sum_probs=154.5
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
.-+++++.|+++.+|..++... ..+...+|.+.++||.++|+|.+-++|+.....
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF 311 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence 4667888999999999988322 345556889999999999999999999887654
Q ss_pred ---------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 528 ---------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 528 ---------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
.+-|.+.++||+.++ +++-.+.+|...|.+|+|+|+|-.|||||.|+++||||++..+++.++.+|.+
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred cCCCceeeccCccchhheeecccC---cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence 455777899999988 78888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 599 ~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.|+.|+|+| .|.+|+|+|.|++|+||..+++.++..+.+|...+.+++|+
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 999999999 78899999999999999999999999999999988876653
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.84 E-value=8.5e-21 Score=212.37 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=141.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++..++.++|-|.++..|+.+....+ -+...+|.+.+.+++++|.|++.++|...
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d---------------- 523 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD---------------- 523 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------------
Confidence 455588999999999999999874322 23345678889999999999999999221
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
...+.+.+.+|-+.|.||.|+|++.|++|||.|++||+||+.+|..++.|.||++.|++|+|||+|++|+||+.|+.
T Consensus 524 ---~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 524 ---HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ---cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 13577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+|||+.+++.+..+.+|... |+++.|+.+
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~d 630 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGT-----IYSLSFSRD 630 (707)
T ss_pred EEEEEcCCCcchhhhhcccCc-----eeEEEEecC
Confidence 999999999999999998544 456666643
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=9.2e-20 Score=184.12 Aligned_cols=175 Identities=17% Similarity=0.265 Sum_probs=139.9
Q ss_pred CCceeccCCCCceEEEEecCCC-CcccccCcccCCC------------CcEEEeccCCCcEEEEecCCCC----------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDM------------DRFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~-~~lasss~~l~~~------------~~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+..+.+.++|+++++|..... ..+.....+|.+| +.|..++|+|+++++|+...+.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3467888899999999988763 2333334444444 4566799999999999888764
Q ss_pred ----------------CCCCccccccccCCCceeeeEEeecC--CCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC
Q 006229 528 ----------------DPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPD--GKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 528 ----------------d~~d~~~~l~d~~~~~t~~~v~~l~g--H~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~ 587 (655)
..+|.++++|++... +.-++.. |.+-|+||+|+|. ..+|+++|.|++|||||+++.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 345666777776554 2222222 3778999999996 679999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+...++.||++.|+.|.++|||..+++|+.||.+.+||++.++++..+.+... |.+|+|+|+
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~------v~sl~fspn 244 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI------VNSLCFSPN 244 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe------EeeEEecCC
Confidence 99999999999999999999999999999999999999999999888765533 568899885
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.9e-20 Score=192.88 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=140.1
Q ss_pred ceeccCCCCceEEEEecCCCCcc-------cccCcccCCCCcEEEeccCCCcEEEEecCCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL-------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------- 528 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l-------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d----------------- 528 (655)
..+++++.|+++++|+......+ ......-++.+.++++||.|++|++|...++.-
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 47788888999999999773221 111122366678999999999999998888640
Q ss_pred --CC------Cccc--------------------------cccccCCCce---------eeeEEeecCCCCCeeEEEEcC
Q 006229 529 --PR------DRVG--------------------------RSAEVGKGFT---------FTEFQLIPASTSKVESCHFSP 565 (655)
Q Consensus 529 --~~------d~~~--------------------------~l~d~~~~~t---------~~~v~~l~gH~~~V~sl~fSp 565 (655)
.. +.+. ++..-.+.++ .+++....+|..-|+.+.|||
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 00 0000 0111111111 234556779999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|++++|+++.|+.||+||.++|+.+.+|+||-..|+-|+|+.|.++|+|||.|.|+||||+++.+....+.+|...+.
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf-- 455 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF-- 455 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred ceeeEEEecC
Q 006229 646 AIGSCFFAPT 655 (655)
Q Consensus 646 ~Vss~~F~P~ 655 (655)
.+.|+||
T Consensus 456 ---~vDwspD 462 (480)
T KOG0271|consen 456 ---AVDWSPD 462 (480)
T ss_pred ---EEEecCC
Confidence 6788886
No 6
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.7e-19 Score=196.08 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=140.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCC----------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
..+...+...+.++.+++|...+.. ...+....+...++++++++.|++|++|+..+.
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~------------ 235 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD------------ 235 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC------------
Confidence 4555667778888899999883322 234445567777789999999999999966332
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
...++++++|...|+||+|+|+|+++++|+.|++|||||+++++++.++.+|.+.|++|+|++++.+|++++.|
T Consensus 236 ------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 236 ------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCe--EEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVR--KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~--~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++|+|||+.++. |+..+..+... . .+.++.|+|+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~--~-~~~~~~fsp~ 345 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENS--A-PVTSVQFSPN 345 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCC--C-ceeEEEECCC
Confidence 999999999999 66676655443 2 5788999885
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=176.35 Aligned_cols=179 Identities=26% Similarity=0.315 Sum_probs=146.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-cccc-------CcccCCCCcEEEeccCCCcEEEEecCCC-C------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-LTSA-------PNQLTDMDRFVDDGSLDDNVESFLSPDD-A------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-lass-------s~~l~~~~~~LasGS~D~tV~vW~s~d~-~------------ 527 (655)
..+...+.++|.|..+++|+.-...+ .+++ ..++.+.+.+|++|+.|..+.+|..... .
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecC
Confidence 34557888899999999998876332 1222 2367899999999999999999955522 1
Q ss_pred ------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe
Q 006229 528 ------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 528 ------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
...|.+-.+||+.++ ..+..|.+|++.|.+++++| +++++++|+.|++.+|||++.+.
T Consensus 144 HtgylScC~f~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred ccceeEEEEEcCCCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 112333477888777 67778899999999999999 99999999999999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
++.+|.||+..|++|+|.|+|.-++|||+|+++|+||+|....+..+..... ...|.+++|+
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~---~~gitSv~FS 282 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI---ICGITSVAFS 282 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc---cCCceeEEEc
Confidence 9999999999999999999999999999999999999999888888763322 3346777776
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.79 E-value=8.8e-19 Score=196.32 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=125.9
Q ss_pred CCCceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
+-+-..++++.|++..+|+.+....+. +....|++...++++||.|.+||+|++..+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--------------- 567 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--------------- 567 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------------
Confidence 444677889999999999999843322 222467888899999999999999977766
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
..|+.|.||+++|++|+|||+|++|++|+.|+.|+|||+.+++.+..+.+|++.|++|.|+.+|..||+||.|.+|
T Consensus 568 ----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 568 ----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred ----cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCe
Q 006229 622 RVWDTENVR 630 (655)
Q Consensus 622 rVWDl~tg~ 630 (655)
+|||+....
T Consensus 644 ~lWD~~~~~ 652 (707)
T KOG0263|consen 644 RLWDLTKVI 652 (707)
T ss_pred EEEEchhhc
Confidence 999997543
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.2e-18 Score=181.76 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=136.0
Q ss_pred CCCCceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++...+++++.|.++..|+++..+.+. +....+.+.+..|++|+.|++|++|+...+.
T Consensus 124 sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------- 190 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------- 190 (480)
T ss_pred cCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------
Confidence 3455688899999999999998754322 2233567778899999999999999766552
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSp-----dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
...+.+++|+..|++++|.| ..++||+++.|++|+|||+..++++.++.||+..|+||+|--+ .+|+||
T Consensus 191 -----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 191 -----QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred -----cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 34577899999999999976 6789999999999999999999999999999999999999744 599999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
|.|++||+|+...|.+++++.+|...+...+.+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 999999999999999999999998877655543
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.77 E-value=1.3e-18 Score=180.26 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=123.3
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCC--------------------------CCCCccccccccCCCceeeeEEeecC
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------DPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------------------d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
.++++.+.++++||.|++|++|+...+. .+.+..+++||+... +.++.+.|
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n---kvIR~YhG 233 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN---KVIRHYHG 233 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh---hhHHHhcc
Confidence 3556667788888888888888777664 233455577777654 67788999
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|-+.|.|++.+|.-..|+||+.|.++||||+++...+.++.||+..|.+|.+.|....++|||.|++||+||++.|+...
T Consensus 234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccceeeee
Q 006229 634 FICCYKCIFVST 645 (655)
Q Consensus 634 ~l~~~~~~v~s~ 645 (655)
++..|...+-+.
T Consensus 314 tlt~hkksvral 325 (460)
T KOG0285|consen 314 TLTHHKKSVRAL 325 (460)
T ss_pred eeecccceeeEE
Confidence 999887765543
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=166.10 Aligned_cols=160 Identities=20% Similarity=0.280 Sum_probs=136.2
Q ss_pred ceeccCCCCceEEEEecCC-C-----------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 473 TLQHNGASSKSLLMFGSDG-M-----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg-~-----------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++++++.++.+.+|+..+ . ....+.+.+..+++++|+++|+|.++.+|--.+
T Consensus 28 ~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~--------------- 92 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED--------------- 92 (312)
T ss_pred eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC---------------
Confidence 4788999999999999884 1 112344556788999999999999999994332
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~---t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
.+|+++.++.||...|.|++|+++|++|||++.|+.|-||.+. ..+|+..|.+|+..|..|.|+|...+|+|+|.
T Consensus 93 --~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 93 --GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred --CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc
Confidence 3578999999999999999999999999999999999999986 45789999999999999999999999999999
Q ss_pred CCcEEEEECC---CCeEEEEEecccceeeeeceeeEEEec
Q 006229 618 DRTVRVWDTE---NVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 618 DgtVrVWDl~---tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|.+||+|+-. .-.|+.+|.+|...+ .+++|+|
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TV-----W~~~F~~ 205 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTV-----WSLAFDN 205 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceE-----EEEEecC
Confidence 9999999876 457899999987744 4566665
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.76 E-value=1.2e-18 Score=183.27 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=136.9
Q ss_pred CCCCceeccCCCCceEEEEecCCC--------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~--------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
+++.....++..++.+..|.+.-. ..-.+...++.+.+.-++++|.|++|++|+....
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------- 212 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------- 212 (464)
T ss_pred ccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence 344566777777788888887652 1233445567777788899999999999965544
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
++.+.+.+|.-.|.||+|+|...+|++||.|..|++||.+++.|+.++.+|+..|..|.|.|++.+|+|+|.|..
T Consensus 213 -----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 213 -----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred -----chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 456777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
++|+|+++.+.+.++.+|...+ .++.|||
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv-----~~~~WhP 316 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDV-----TSLTWHP 316 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhh-----eeecccc
Confidence 9999999988888888887654 4677777
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=1e-17 Score=186.42 Aligned_cols=175 Identities=18% Similarity=0.242 Sum_probs=143.5
Q ss_pred CCceeccCCCCceEEEEecCCCCc------------ccccCcc-cCCCCcEEEeccCCCcEEEEecCCCC----------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS------------LTSAPNQ-LTDMDRFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~------------lasss~~-l~~~~~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+.++.+++.|++++.|..+.... ..+.... -.....|++++|.|.++++|..+.++
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 335889999999999997733110 0000111 12333789999999999999776632
Q ss_pred -------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 528 -------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 528 -------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+.|...++|+.. ......++.||+..|.||.|++...+++|+|.|+|||||
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le---~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE---QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeeccc---CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 1234445777766 347788999999999999999999999999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.+.++.|+.+|+||+..|..+.|-.+++.|+||+.||.||||++.+.+|+.++..|...+....++
T Consensus 533 ~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred EeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999888766543
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.75 E-value=5e-19 Score=182.71 Aligned_cols=170 Identities=17% Similarity=0.239 Sum_probs=144.8
Q ss_pred ceeccCCCCceEEEEecCCCC------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------- 527 (655)
...+++..|.++.+|+..... ....+...+.-.++.+++||.|.+|++|++..+.
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n 287 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN 287 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC
Confidence 567788899999999987621 1222333555666899999999999999998886
Q ss_pred -----CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE
Q 006229 528 -----DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602 (655)
Q Consensus 528 -----d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its 602 (655)
..+|+.+.+|+........+.+.+.||...|+.|+|+ .+++++++.|.+||+|++.++++++++.||...|-|
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 365 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccccee
Confidence 3567778999988877666778889999999999996 679999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+. +++++|||.|.+|||||+..|.|++.+.+|...+-|+-
T Consensus 366 lQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 366 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 407 (499)
T ss_pred hhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee
Confidence 9875 89999999999999999999999999999988765443
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.75 E-value=2e-17 Score=176.62 Aligned_cols=179 Identities=20% Similarity=0.279 Sum_probs=143.9
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC---------CC---
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------DP--- 529 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------d~--- 529 (655)
..+++.+++++.++.+.+|+.+|.-. -.+.+.+....+.+|++++.|+++.+|+...+. .+
T Consensus 244 n~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 44567889999999999999988321 123334557777899999999999999886664 01
Q ss_pred -------------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc
Q 006229 530 -------------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596 (655)
Q Consensus 530 -------------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH 596 (655)
-+..+++..+. ..+++.++.+|.++|.++.|+|.|.+|+|+|.|+|++||.+....+.+.|.+|
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv~---~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKVG---EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred eEEecCceEeecCCCceEEEEEec---CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 01111222221 22567888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCC---------CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 597 TQWITDVRFSPS---------LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 597 ~~~ItsVafsPd---------g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+..|+.+.|+|+ +..|++++.|++|++||+..+.|+++|..|...| ++++|+|+
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pV-----ysvafS~~ 463 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPV-----YSVAFSPN 463 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCce-----EEEEecCC
Confidence 999999999995 4589999999999999999999999999887765 46777774
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.1e-17 Score=173.93 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=130.7
Q ss_pred ceeccCCCCceEEEEecCC---------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDG---------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+++++.|-.+..|+.+. .....++...+.+.+++|.+++.|.+|+.|....+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 5566666666666776665 123445555666777788888888888888666554
Q ss_pred ----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC----------C-----CEEEEEeCCCcEEEE
Q 006229 528 ----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----------G-----KLLATGGHDKKAVLW 582 (655)
Q Consensus 528 ----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd----------G-----~lLaSgs~DgtVrIW 582 (655)
...+-.+++|.+... .+...++.|.-+|.|++|.|. | .++++++.|++||+|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 112223344444433 345567789999999999763 2 489999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|+.++.|+.++.||...|..++|+|.|+||+|+.+|+++||||+.++.|.+++..|.-.+.+.
T Consensus 320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 999999999999999999999999999999999999999999999999999999887665543
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.74 E-value=6.2e-17 Score=161.59 Aligned_cols=178 Identities=20% Similarity=0.276 Sum_probs=141.7
Q ss_pred CCCCceeccCCCCceEEEEecCCCC-----ccccc--CcccCCCCcEEEeccCCCcEEEEecCCCC--------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG-----SLTSA--PNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~-----~lass--s~~l~~~~~~LasGS~D~tV~vW~s~d~~-------------- 527 (655)
..++....+++.|+++.+|+..... ...++ ...+.++..-|.+|.-+++|++|+.....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 4556788999999999999987621 12222 33456666778899999999999766542
Q ss_pred ------CCC-------CccccccccCC---CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEE
Q 006229 528 ------DPR-------DRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVK 590 (655)
Q Consensus 528 ------d~~-------d~~~~l~d~~~---~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l 590 (655)
++. ...--+|+... ...+.++..++.|.+.|..|.||||+++||++|.|++|+||+++++ +..
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 110 01113444433 2345677889999999999999999999999999999999999998 777
Q ss_pred EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 591 ~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
..+++|...|++++||.||+||+|||.|+++|+||++.++.++.+.+|.....|.+
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 88899999999999999999999999999999999999999999999877665443
No 18
>PTZ00421 coronin; Provisional
Probab=99.73 E-value=1.3e-16 Score=179.39 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=106.1
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++||.|++|++|+..++... ......+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||+.
T Consensus 89 ~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 58999999999999977654210 00113566788999999999999975 699999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++.+..+.+|...|++|+|+|++.+|+|++.|++|+|||+++++.+..+.+|..
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999988887754
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=162.78 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=125.0
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCC--------------------------CCCccc
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--------------------------PRDRVG 534 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d--------------------------~~d~~~ 534 (655)
..+++.|++|. +.++++|.|+.+-+|++.+... +-+..-
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 45666677654 4789999999999998776641 111111
Q ss_pred cccccCC---CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCC
Q 006229 535 RSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLS 610 (655)
Q Consensus 535 ~l~d~~~---~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~ 610 (655)
.++++.. ....+..+.+.+|++.+.||.|-.|+ .|+|++.|.++-+||++++..+..|.||++.|.+|+++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 2222221 12335668899999999999998755 688999999999999999999999999999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++||+-|++.+|||+|.+.|+.+|.+|.. +|+++.|+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ffP~ 240 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFFPS 240 (343)
T ss_pred eEEecccccceeeeeccCcceeEeeccccc-----ccceEEEccC
Confidence 999999999999999999999999999864 5778999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=177.65 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=134.9
Q ss_pred CCCCceeccCCCCceEEEEecCCCC---------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~---------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
.+++..+.+++.|+++.+|+....+ ...+....|.+.++++++|+.|++|++|+...+
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~------------- 278 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG------------- 278 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------------
Confidence 5566788999999999999993321 123345577888899999999999999966544
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCC--EEEEEEcCCCCEEEEE
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQW--ITDVRFSPSLSRLATS 615 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~--~l~tl~gH~~~--ItsVafsPdg~~LaSg 615 (655)
++++.+.+|.+.|++|+|++|+++|++++.|+.|+|||+.++. ++.++.++... |++++|+|++.+|+++
T Consensus 279 ------~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 279 ------ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ------eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 6889999999999999999999999999999999999999999 67888888777 9999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccce
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
+.|++|++||++.+.++..+.+|...
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCc
Confidence 99999999999999999999988765
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.3e-17 Score=177.76 Aligned_cols=169 Identities=17% Similarity=0.218 Sum_probs=130.3
Q ss_pred CCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------------
Q 006229 480 SSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------------ 527 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------------ 527 (655)
..+.+-+|+.+....+ .+....|-....++++||.|..|++|+.....
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence 3455666666653211 11122334444667777777777777555443
Q ss_pred --CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE
Q 006229 528 --DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (655)
Q Consensus 528 --d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa 604 (655)
..+|..+++|+-... +.+..++.||+..|.+|+|+| |.+.+||+|-|+||+||.+.+..+..+|+||+..|+||+
T Consensus 113 LtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred EecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence 233444566655443 678899999999999999999 888999999999999999999999999999999999999
Q ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 605 FSPSL--SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 605 fsPdg--~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|-+-| .+|+||+.|.+|||||..+..|+.++.+|..- |+.++|||.
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-----vs~v~fhp~ 238 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-----VSFVFFHPE 238 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----ceEEEecCC
Confidence 98855 59999999999999999999999999999764 457888884
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=178.10 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=121.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCC-------------------------------CCCCccccccccCCCce------e
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDA-------------------------------DPRDRVGRSAEVGKGFT------F 545 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~-------------------------------d~~d~~~~l~d~~~~~t------~ 545 (655)
+..+.++++||.|.+|++|...++. .+.|.++++|+..+... +
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 4555799999999999999552221 33466678888776211 1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.+-.+...|...|+||+++|+.++|||||.|++++||+++.+....+|.||+..|+||.|+|....++|+|.|+|||||.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 12224467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeec
Q 006229 626 TENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+++|+.+|.+|++.+....
T Consensus 534 is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 534 ISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred eccceeeeeecCccceeEeee
Confidence 999999999999988776443
No 23
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=5.9e-17 Score=182.97 Aligned_cols=147 Identities=16% Similarity=0.273 Sum_probs=114.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCC-------C----------------------------------CCCcccccccc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDA-------D----------------------------------PRDRVGRSAEV 539 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~-------d----------------------------------~~d~~~~l~d~ 539 (655)
.|...++|||+|+.|+.|+||.+.+.. + .....+.+.+.
T Consensus 274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~ 353 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK 353 (712)
T ss_pred EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence 334444599999999999999666511 0 00000111122
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCC
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSAD 618 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~D 618 (655)
.-.+.-+++..+.||++.|.+|.||.++ +|++++.|+|||||++....|+++|. |.+.||||+|+| |.+|++|||-|
T Consensus 354 ~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 354 AFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred cccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 2234446788899999999999999655 89999999999999999999999997 999999999999 78999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|.||||++...+.+.+..++. .|++++|.|+
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~Pd 462 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLRD------LITAVCYSPD 462 (712)
T ss_pred cceEEeecCcCeeEeehhhhh------hheeEEeccC
Confidence 999999999888777766662 2556777775
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.70 E-value=3e-16 Score=158.83 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
...+.++|.|.++-+|....+ +......++.++||+..|..|+.++||.+.++++.|+++|+||+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 367899999999999965543 112235788999999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++....|.||+..|.+|+|++|.+.|+|||.|.+|++||+. +.|..++..+.. .-.|++++|+|+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~---~~WVscvrfsP~ 159 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSH---REWVSCVRFSPN 159 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCC---cCcEEEEEEcCC
Confidence 999999999999999999999999999999999999999997 566666655532 334778999995
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.6e-17 Score=168.78 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=127.9
Q ss_pred CCCCCceeccCCCCceEEEEecCCC-Cc---------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCC
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGM-GS---------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD 531 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~-~~---------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d 531 (655)
.++++..+++++.|+-+-+|+-... -+ -++....|...+..+++|+-|+.|++|....+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----- 295 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----- 295 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-----
Confidence 3566788999999999999986531 00 11222244555677889999999999954444
Q ss_pred ccccccccCCCceeeeEEeec-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC
Q 006229 532 RVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~-gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~ 610 (655)
.|++.+. +|+..|+|+.||.|+..+++++.|.+|||.-+.+|++++.|+||+..|+.+.|.+||.
T Consensus 296 --------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 296 --------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred --------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence 4555554 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++|+|.||+||||+..+.+|+.+|....
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCC
Confidence 99999999999999999999999987655
No 26
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=4.7e-16 Score=156.26 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=99.7
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..++++..+++|...+.||.|+|+|++||+|+.|..|.+||++..-|++.+..|+-+|..|.|+.||++|||||+|..|-
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 44567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|=++.+|..+..+.|....+ .++|||.
T Consensus 257 IA~vetGd~~~eI~~~~~t~------tVAWHPk 283 (313)
T KOG1407|consen 257 IAEVETGDRVWEIPCEGPTF------TVAWHPK 283 (313)
T ss_pred eEecccCCeEEEeeccCCce------eEEecCC
Confidence 99999999999998876654 6999995
No 27
>PTZ00420 coronin; Provisional
Probab=99.68 E-value=2.1e-15 Score=171.40 Aligned_cols=125 Identities=10% Similarity=0.138 Sum_probs=103.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~l-LaSgs~DgtVrIWDl 584 (655)
+.+|++|+.|++|++|+...+.... . .....+..+.+|...|.+|+|+|++.. |++|+.|++|+|||+
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~---------~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESV---------K--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccc---------c--ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 4689999999999999776542100 0 001234567899999999999998875 579999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
++++.+..+. |...|++|+|+|+|.+|++++.|++|+|||+++++++..+.+|....
T Consensus 156 ~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 156 ENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred CCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 9998887776 67889999999999999999999999999999999999998887543
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.67 E-value=7.2e-17 Score=166.86 Aligned_cols=150 Identities=16% Similarity=0.276 Sum_probs=121.4
Q ss_pred ceeccCCCCceEEEEecCCCCccccc------CcccCCCCcEEEeccCCCcEEEEecCCCC-------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA------PNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass------s~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------- 527 (655)
.++.+++.|.++.+|+......+.+- ..-+...+.+++++|.|.++.+|+.....
T Consensus 248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 327 (499)
T ss_pred eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec
Confidence 57788889999999988763221111 11223444678899999999999665543
Q ss_pred --------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC
Q 006229 528 --------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599 (655)
Q Consensus 528 --------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ 599 (655)
...|++++.|+..++ .+++++.+|...|.|+.+. |+++++|+.|.+||+||++.|.|++.++||+..
T Consensus 328 fd~kyIVsASgDRTikvW~~st~---efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL 402 (499)
T KOG0281|consen 328 FDDKYIVSASGDRTIKVWSTSTC---EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 402 (499)
T ss_pred cccceEEEecCCceEEEEeccce---eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence 234566677766654 8899999999999999884 999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 600 ITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 600 ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
|.||+|. .+.|+||+.||+|||||+..+
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccc
Confidence 9999995 789999999999999999764
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.66 E-value=1.4e-16 Score=167.73 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=109.5
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
.....+.++++|..|+.|+.|... ...+..+.+|. ..|+|++|||....|+|++.|++|
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpn--------------------mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPN--------------------MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccc--------------------hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 334555677778778888877322 23455566655 899999999988899999999999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|||....+..+.+.||.-.|+||+|+|.-.+|||||.|..|++||.+++.|+.++..|...+. .+.|.|+
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl-----~~~f~~n 275 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL-----AVKFNPN 275 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEE-----EEEEcCC
Confidence 9999999999899999999999999999999999999999999999999999999999887655 5666653
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.6e-15 Score=150.57 Aligned_cols=129 Identities=24% Similarity=0.390 Sum_probs=107.9
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
+..|++|+.|+.|++|....+ .++.+...+ .+|+..|++|+|+|.|++|++||.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~~----------------~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSG----------------DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCCC----------------CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 358999999999999955432 123343333 379999999999999999999999999999975
Q ss_pred C--CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~--t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~---tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. .++++.+++||+..|.||+|+++|.+|||||.|+.|-||.+. ..+|+..+..|.- +|--|.|||+
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----DVK~V~WHPt 161 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----DVKHVIWHPT 161 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----cccEEEEcCC
Confidence 4 568999999999999999999999999999999999999997 3467788887755 3457899995
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=152.18 Aligned_cols=105 Identities=21% Similarity=0.332 Sum_probs=89.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.++.++.+|+..|++|.|..||++++|||+||+|||||++...+-+.+. |...|++|..+|+-..|++|..+|.|+|||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 3788999999999999999999999999999999999999977777665 889999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+..|.+.+..... ..|.++..+||
T Consensus 153 l~~~~c~~~liPe~~----~~i~sl~v~~d 178 (311)
T KOG0315|consen 153 LGENSCTHELIPEDD----TSIQSLTVMPD 178 (311)
T ss_pred ccCCccccccCCCCC----cceeeEEEcCC
Confidence 998877766654432 33445555553
No 32
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.64 E-value=1.7e-15 Score=174.92 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=127.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
++.+.+.+||+||.|+.|.+|..... .....+...-.......++++..+.+|.+.|..++|+|++.+|++++.|.+|.
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 56667789999999999999955431 11111111112334556789999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc-eeeeeceeeEEEecC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC-IFVSTAIGSCFFAPT 655 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~-~v~s~~Vss~~F~P~ 655 (655)
|||..+++++.++++|...|..|.|+|-|+||||-+.|++|+||++.+..+.+.+..+-. ......+..+.|+||
T Consensus 155 iwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 155 IWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999998888888877644 344556789999997
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.64 E-value=2.2e-15 Score=161.10 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=106.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC---------CEEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---------KLLA 571 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG---------~lLa 571 (655)
++.+.+.+|+++|.|+++++|....+ .++..+.+|+..|+.+.|+|+| ..|+
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~-------------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS-------------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC-------------------cchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 33444569999999999999954333 4566788999999999999865 3699
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 572 Sgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++.|.+|++||+..+.++++|..|...|++|+|+|+|+|||+|+.||.|.||++++++.++.+.....
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999998877655
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=2.8e-15 Score=167.28 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=117.6
Q ss_pred CCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee
Q 006229 480 SSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (655)
Q Consensus 480 ~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l 551 (655)
.-+-+++|.-..+. ....+...+.+.+.++++|+.|+.|++|+...+ -|+.++
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------------------fC~vTF 388 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------------------FCFVTF 388 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------------------eEEEEe
Confidence 34566777655421 234445567788889999999999999977665 578888
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC--------------------------------------------CC
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------------------------------------------SF 587 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~--------------------------------------------t~ 587 (655)
..|++.|+.+.|+.+|+.|++.|.||+||.||+. +|
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9999999999999999999999999999999753 45
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+..+.||+++|.+++|+|++..|+|+|.|+|||+||+-.. ..+.++.. ...+..+.|+|+
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i------~sdvl~vsfrPd 531 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI------RSDVLAVSFRPD 531 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee------ccceeEEEEcCC
Confidence 667778899999999999999999999999999999998543 22333332 223446777765
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.2e-16 Score=168.99 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=116.6
Q ss_pred ceeccCCCCceEEEEecCCCC---------cccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~---------~lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....++|+|-++.+|+-++.- ...+-...+.+.+ ..++++|.|++|++|..-..
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---------------- 173 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---------------- 173 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------
Confidence 466778889999999888621 1111122233332 45689999999999944333
Q ss_pred ceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+..++.+|...|+||+|-+ |..+|+||+.|.+|+|||..+..|+.+|+||+..|.+++|+|.-..|+|||+||+
T Consensus 174 ---~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 174 ---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ---CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc
Confidence 35678889999999999998 4459999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEec
Q 006229 621 VRVWDTENVRKLTFICC 637 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~ 637 (655)
||||+..+-+...++..
T Consensus 251 vriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNY 267 (794)
T ss_pred EEEecCcceehhhhhhc
Confidence 99999887655444433
No 36
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=3.9e-15 Score=164.11 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=121.3
Q ss_pred ceeccCCCCceEEEEecCCCCcc----------cccCccc-CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL----------TSAPNQL-TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l-~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
..+.++|.|.++.+|++...... .+....+ ......+++|++|+.|.+|+...+... .+.
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~------ 156 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVA------ 156 (735)
T ss_pred CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhh------
Confidence 35566666777777766543200 0001111 333345667777777777765544210 000
Q ss_pred CceeeeEEeec-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 542 ~~t~~~v~~l~-gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+....+..+. |+...|++++-++.|..|++|+..+.++|||.++++.+..++||++.|.+|..++||+.++|+|.||+
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence 01112223333 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeece
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAI 647 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~V 647 (655)
|||||+.-.+|+.++..|...+.+..+
T Consensus 237 IrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred EEeeeccccceeeeEEeccCceEEEee
Confidence 999999999999999999887765543
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=169.03 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=135.8
Q ss_pred ceeccCCCCceEEEEecCCCCcccc---------cCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTS---------APNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~las---------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+..++.+.++..|+......+.. ....+...+.++.+||.|.++++|+..++.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT 298 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence 3555666777777777654222111 122334346888999999999999877765
Q ss_pred --------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC
Q 006229 528 --------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599 (655)
Q Consensus 528 --------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ 599 (655)
..+|..+++|++..+ .++..+.+|.+.|.|+..+ +.++++|+.|++|+|||+.++++++++.||+..
T Consensus 299 ~~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 299 IDPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ccCceEeeccCCceEEEEeccCc---ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 236777788888865 6778888899999999997 889999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeee
Q 006229 600 ITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVST 645 (655)
Q Consensus 600 ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~ 645 (655)
|+++.+... .++++||.|++|++||++++ +|+.++.+|...+.+.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 999988765 89999999999999999999 9999999998876443
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.62 E-value=8.6e-15 Score=158.27 Aligned_cols=113 Identities=27% Similarity=0.375 Sum_probs=103.9
Q ss_pred EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 509 LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
+++||.|.+|.+| .+..++...+++.|+.-|.|+.|+|||.+|+|++.||+|.|||=.+++
T Consensus 163 i~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 163 IATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred EEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 6677788887777 455667778888999999999999999999999999999999999999
Q ss_pred EEEEec---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 589 VKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 589 ~l~tl~---gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
.+..|. +|.+.|.+|+|+||+..|+|+|.|+++||||+.+.+++.++.....
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 999998 9999999999999999999999999999999999999999988765
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.2e-15 Score=165.15 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=129.7
Q ss_pred CCCCceeccCCCCceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
++++.++++++.|+.+.+|+... ....+++...+...++.+.+.|.||+|+.|+.....
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf 438 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF 438 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee
Confidence 66778999999999999999875 223344444566677889999999999999754432
Q ss_pred -----C--CC--------CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEE
Q 006229 528 -----D--PR--------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKS 591 (655)
Q Consensus 528 -----d--~~--------d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~ 591 (655)
| +. .--+.+|.+.+| +.+..+.||.++|.+++|+|+|..|+|||+|+|||+||+-... .+.
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE 515 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE 515 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee
Confidence 1 00 111255555555 7778889999999999999999999999999999999986542 344
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++ .+...|+.|+|+|+|+.|+.+..||.|.+||+..+..+..+.+
T Consensus 516 tl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 516 TL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred eE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 44 4888999999999999999999999999999998776655554
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=3.4e-15 Score=155.59 Aligned_cols=177 Identities=16% Similarity=0.251 Sum_probs=147.2
Q ss_pred CCCceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCC---------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD--------------- 526 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~--------------- 526 (655)
+.-.+.++++.+.++.+|+..... .-.+....++..+++++++|.|-.+++|+...-
T Consensus 118 p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 118 PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVS 197 (406)
T ss_pred cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccccee
Confidence 334566677789999999887521 122444567888899999999999999964331
Q ss_pred ------------CCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 006229 527 ------------ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (655)
Q Consensus 527 ------------~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~ 594 (655)
...+|..++.|+...+ .++.++.+|..-|..++.+.||.++++++.|-+|++|.+.++.|+..++
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 0456777788888877 6788999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 EHTQWITDVRFSPS---------------LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 gH~~~ItsVafsPd---------------g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+|...|-|++|.|. +.+++++|.|++||+||+.++.|+.++.+|.+.+. +++|||
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr-----~~af~p 344 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR-----GVAFSP 344 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee-----eeEEcC
Confidence 99999999999883 24899999999999999999999999999998765 555555
No 41
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=8.7e-15 Score=149.67 Aligned_cols=142 Identities=22% Similarity=0.317 Sum_probs=114.0
Q ss_pred CCCceeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEE
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ 549 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~ 549 (655)
.+..+..+..+..+.+.|+|..+ .+++.||+|++||+|...+... ..-+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g~-----------------~~~k 66 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSGQ-----------------LVPK 66 (347)
T ss_pred cceecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCCc-----------------ccch
Confidence 33344455556778888888433 5788999999999997665310 0113
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTE 627 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~ 627 (655)
....|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+-.|...|.++.|-+... .|+|||.|++||.||.|
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 445789999999999999999999999999999999995 447778999999999988766 79999999999999999
Q ss_pred CCeEEEEEecccceee
Q 006229 628 NVRKLTFICCYKCIFV 643 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~ 643 (655)
....+.++.-....+.
T Consensus 146 ~~~pv~t~~LPeRvYa 161 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYA 161 (347)
T ss_pred CCCeeeeeeccceeee
Confidence 9888888877665544
No 42
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=154.43 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=126.4
Q ss_pred ceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------- 528 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d---------------- 528 (655)
....+++.|+..++|+..... ...+....+.+..+.++++|.|..|++|-+.....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 566778888899998876532 23344556677778899999999999996655431
Q ss_pred ----------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 529 ----------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 529 ----------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
..+.+..+.+..++..+..+... ...-.+++.+|||||.+|.+|..|+.|+|||+.+...+..|.+|++
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 11222233333444333322211 2334589999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.|+.|+|+.+|-||++++.|+.|++||+|.-+.+.+|.-..
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999888777776544
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.59 E-value=2.8e-14 Score=145.83 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=139.5
Q ss_pred CCCCceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
+.+...+.+++.|++++.|+.... ..++...........+|.+|+.|+++++|+.....
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqlt 178 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLT 178 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEE
Confidence 456678889999999999998752 11221111122223568899999999999887332
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEE
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVK 590 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----~~~l 590 (655)
.+=+..+++|+..+. ....++.||.+.|+.+..+++|.++.+-+.|.+|++||++. -+|+
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~---d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKN---DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred EEEecccccceeeccccCceeeeccccC---cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 111233477777665 45677899999999999999999999999999999999974 3678
Q ss_pred EEecccCCC----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 591 STLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 591 ~tl~gH~~~----ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.||... ...++|+|+++.+..|+.|+.|+|||.....++..+.+|... |..+.|||.
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~ 319 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPT 319 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCC
Confidence 888887543 457889999999999999999999999999999999988654 557888884
No 44
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.59 E-value=1.4e-14 Score=154.64 Aligned_cols=132 Identities=22% Similarity=0.316 Sum_probs=108.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
-.+++|+.|.+|++|+...... ..........+.+|+..|..|+|++ +..+|++++.|+.+.|||++
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 4578999999999997655421 1223346677889999999999999 67799999999999999999
Q ss_pred --CCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 --t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.++.+...+|+..|+||+|+| ++..|||||.|++|+|||+|+. .+++++.+|...+. .+.|+|.
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~-----~V~WSPh 327 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF-----QVEWSPH 327 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE-----EEEeCCC
Confidence 5677778889999999999999 5567999999999999999975 46788888876554 6778773
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.2e-14 Score=143.87 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=114.1
Q ss_pred ceeccCCCCceEEEEecCCCCc---------ccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS---------LTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~---------lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....+++.|+++.+|+...... ..+-+....... +.+.++|+|++|++|+..-.
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---------------- 137 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---------------- 137 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC----------------
Confidence 4555666778888887433111 001111112222 33566699999999955443
Q ss_pred ceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRT 620 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~Dgt 620 (655)
..+.++.+|..-|....||| .+.+++++|.|++++|||++..-....+..|...|.|+.|+. +...|+||+.|+.
T Consensus 138 ---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 138 ---NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred ---cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence 46778999999999999999 788999999999999999975433334899999999999997 5678999999999
Q ss_pred EEEEECCCCe-EEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENVR-KLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg~-~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
||+||+++-+ .+..+.+|. .+|..+.|+|
T Consensus 215 vr~wDir~~r~pl~eL~gh~-----~AVRkvk~Sp 244 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHG-----LAVRKVKFSP 244 (311)
T ss_pred EEEEehhhccccceeecCCc-----eEEEEEecCc
Confidence 9999999753 345555553 3455677766
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.58 E-value=2.8e-14 Score=145.89 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=143.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc---------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS---------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~---------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.++.+.+++++.|..+++|+..+... -++-...+...+..|.+++.|++|+.|++..+.
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v 135 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV 135 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccccee
Confidence 56778999999999999999877322 222233445666789999999999999998886
Q ss_pred ---------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t 592 (655)
...|+..++||+.+- ..++++ ...-.++++.|.-++.-+.+|+-|+.|++||++....+.+
T Consensus 136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k---~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKK---EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred eecCccccCCeEEEecCCCceEEEEeeccc---chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 233555577766643 222222 2245689999999999999999999999999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~----tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.||.+.|+.|..+|+|.++.|-+.|.+|++||++ .-+|+..+.++.-.+ +...-.|.|+|+
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf-eknlL~cswsp~ 277 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF-EKNLLKCSWSPN 277 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh-hhhcceeeccCC
Confidence 99999999999999999999999999999999998 356788888765433 333457888885
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.3e-15 Score=166.47 Aligned_cols=131 Identities=18% Similarity=0.298 Sum_probs=117.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.|++..-+|.++-..+.|.+|+..-+ .++..|..|.++|..|+|||++.+|+|||.|.+|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 34555568888888999999966554 35667789999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+..+.+|+.++.||-+.|..+.|++.-.+|+|+|+|-|||||+..++.|+..+++|.-.+- +..|||+
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM-----cAqFhpt 146 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM-----CAQFHPT 146 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE-----eeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999987655 6778884
No 48
>PTZ00421 coronin; Provisional
Probab=99.57 E-value=7.4e-14 Score=157.26 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=112.1
Q ss_pred CCceeccCCCCceEEEEecCCCCc---------------ccccCcccCCC-CcEEEeccCCCcEEEEecCCCCCCCCccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS---------------LTSAPNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVG 534 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~---------------lasss~~l~~~-~~~LasGS~D~tV~vW~s~d~~d~~d~~~ 534 (655)
+...+++++.|+++.+|+....+. -.+....+.+. ..+|++|+.|++|++|+...+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-------- 158 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-------- 158 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--------
Confidence 345788899999999998754211 01112234444 368999999999999966543
Q ss_pred cccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-EEEEEEcCCCCEEE
Q 006229 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLA 613 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-ItsVafsPdg~~La 613 (655)
..+..+.+|...|.+|+|+|+|.+|++|+.|++|+|||+++++.+.++.+|.+. +..+.|++++..|+
T Consensus 159 -----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 159 -----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred -----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 355677889999999999999999999999999999999999999999999875 45788999988888
Q ss_pred EEe----CCCcEEEEECCCCe
Q 006229 614 TSS----ADRTVRVWDTENVR 630 (655)
Q Consensus 614 SgS----~DgtVrVWDl~tg~ 630 (655)
+++ .|++|+|||+++..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCC
Confidence 765 47899999998754
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.57 E-value=2.5e-15 Score=161.11 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=103.1
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.-..+++.+++.|+.|++|++-+. .++++++.+|..+|.+++|+.+|..|+|+|.|++|++|
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 336689999999999999966553 26899999999999999999999999999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
|+++|+++..|. -...++||.|+|++ ..+++|+.|+.|+.||+|+++.+.++..|
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999999999985 45578999999998 78999999999999999998866555444
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=2.2e-14 Score=142.49 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=99.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+..+++.|++|++|++..+ .+++++.+|...|..++.+.|...|++|+.|+.|.+||+.+
T Consensus 30 nY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred CEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 37778889999999976665 58899999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--VRKLTFI 635 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t--g~~v~~l 635 (655)
|+.++.|.||...|+.|+|..+...++|||.|.+||+||.|+ .+.+.+|
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 999999999999999999999999999999999999999975 3444443
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.56 E-value=2.9e-14 Score=148.38 Aligned_cols=174 Identities=15% Similarity=0.218 Sum_probs=145.5
Q ss_pred CCceeccCCCCceEEEEecCCCCc------cc--ccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS------LT--SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~------la--sss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
....+.+++.|.++.+|+...... .+ +-...+.....|+.+++.|+.|+.|+....+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 346888999999999999876211 11 1122456666889999999999999876543
Q ss_pred -----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc
Q 006229 528 -----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596 (655)
Q Consensus 528 -----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH 596 (655)
.++|.+.++||+..- ..|..+.||+.+|.+|.+.|-...++|||+|++||+||++.++...++..|
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr---~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTR---ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred eccccceeEEecCCcceEEEeeeccc---ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 466788899988764 678889999999999999997778999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
...|.+++.+|....+||+|.| .|+-|++-.|+.+..+.+|...+.+..++
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 9999999999999999999999 78999999999888888887776666543
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.55 E-value=2.9e-13 Score=133.92 Aligned_cols=159 Identities=24% Similarity=0.390 Sum_probs=124.8
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+..++.++.+.+|+.+.... ..+....+.+.+.++++++.|+.|++|+...+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------------ 83 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------------------ 83 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------------------
Confidence 4566666688888888764311 11112233445568889999999999965443
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
..+..+..|...|.+++|+++++++++++.|+.|++||+++++.+..+.+|...|++++|+|++.+|++++.|+.|++|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 3445566888899999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++++.+..+..+.. .+.++.|+|+
T Consensus 163 d~~~~~~~~~~~~~~~-----~i~~~~~~~~ 188 (289)
T cd00200 163 DLRTGKCVATLTGHTG-----EVNSVAFSPD 188 (289)
T ss_pred EccccccceeEecCcc-----ccceEEECCC
Confidence 9999888888876543 3446666663
No 53
>PTZ00420 coronin; Provisional
Probab=99.55 E-value=1.4e-13 Score=156.49 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=101.3
Q ss_pred eccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC--
Q 006229 511 DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-- 587 (655)
Q Consensus 511 sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~-- 587 (655)
+++.+..+..|....+ +.+.++++|+..+. ..+..+.+|.+.|.+|+|+|+ +.+|+||+.|++|+|||+.++
T Consensus 35 a~n~~~~A~~w~~~gG--G~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 35 ACSSGFVAVPWEVEGG--GLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred eeCCCeEEEEEEcCCC--CceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 3334444455654332 23445555555443 467788999999999999996 789999999999999999764
Q ss_pred ------eEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 ------TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ------~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++..+.+|...|++|+|+|++.. |+|+|.|++|+|||++++..+..+..+ ..|.++.|+|+
T Consensus 110 ~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~------~~V~Slswspd 178 (568)
T PTZ00420 110 SVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP------KKLSSLKWNIK 178 (568)
T ss_pred cccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC------CcEEEEEECCC
Confidence 234578899999999999999876 579999999999999999877766532 23567888875
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.4e-14 Score=157.13 Aligned_cols=172 Identities=15% Similarity=0.213 Sum_probs=132.3
Q ss_pred CceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccc-------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS------- 536 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l------- 536 (655)
-..+.++|+|-++++|+-.....++ +-...|.+.++.|+++|.|.+||+|+...-.......+.+
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 3577889999999999987643322 2234778888999999999999999764322111000100
Q ss_pred ---cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCCCCE
Q 006229 537 ---AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSR 611 (655)
Q Consensus 537 ---~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPdg~~ 611 (655)
.++......-....+.||...|+-++|+|.-.+|+||+.|+.|++|.+... ..+.++.||...|+||-|+|.-.+
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 111111122344678899999999999999999999999999999998654 357788999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 612 LATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
|+|.|+|++|||||+...+++.+|......+.
T Consensus 265 IlSnsEDksirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred eEecCCCccEEEEecccccceeeeeccCCeEE
Confidence 99999999999999999999999976655544
No 55
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.55 E-value=3.5e-15 Score=150.54 Aligned_cols=77 Identities=32% Similarity=0.735 Sum_probs=65.7
Q ss_pred ccchHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhcc----Cccchhhhhhh
Q 006229 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI 79 (655)
Q Consensus 4 ~~~~~~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~~~~~~~d~~~~fL~EWw~~FWd~f~a~~~----~~~S~~a~qYi 79 (655)
++-.|+++|..||||||++-+..++|+.||.|..+.++ +.+-.+.+||++|||+|||+|+|... +.||..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 45678999999999999999999999999999988776 45666789999999999999999444 46777777766
Q ss_pred HH
Q 006229 80 ES 81 (655)
Q Consensus 80 q~ 81 (655)
+.
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 64
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.9e-14 Score=142.09 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=103.8
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEE
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLW 582 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIW 582 (655)
.++..+++++-||++++|+.... -.++..++.|...|.+|+|++ +...++++|.|++||||
T Consensus 71 ~~e~~~~~a~GDGSLrl~d~~~~------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFDLTMP------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred CCcceEEEEecCceEEEeccCCC------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 34467888999999999963222 247788899999999999999 66788889999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
|..-...+.+|.||...|+...|+| ....++++|.|++++|||++.......|..|...+.
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 9999999999999999999999999 568999999999999999997666656877775443
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.54 E-value=9.1e-14 Score=140.30 Aligned_cols=171 Identities=17% Similarity=0.172 Sum_probs=132.9
Q ss_pred CCCceeccCCCCceEEEEec-CCC-------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC------------
Q 006229 470 SRPTLQHNGASSKSLLMFGS-DGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------ 529 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~-dg~-------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------ 529 (655)
..+.++.+++.|.+.-+|.. +|+ ..-++...+++-.++.+.+||.|.++++|++..++..
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~ 99 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV 99 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE
Confidence 44567888888777777766 442 1224445566667788999999999999999888610
Q ss_pred ------------------CCccccccccCCCc----eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 530 ------------------RDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 530 ------------------~d~~~~l~d~~~~~----t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
....+.+.++.... .-.++..+..+.++++...|+|-+..|++|..||.|.+||++++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 11112333333211 22346677788899999999999999999999999999999997
Q ss_pred -eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 588 -TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 588 -~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+.+..-+.|+..|++++|++|..+++|+|.|.+.++||+++.+++.++.+...
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 56667789999999999999999999999999999999999999999876544
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.54 E-value=3.8e-13 Score=133.05 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=124.8
Q ss_pred ceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+..++.++.+.+|+....... .+....+.+...++++++.|+.|.+|+....
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------ 125 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------------------ 125 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------------------
Confidence 45666677888888988762111 1112233444577888878999999955422
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|...|++++|+|+++.|++++.|+.|++|
T Consensus 126 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 126 -KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred -EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence 4555666888999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++++..+..+..+.. .+.++.|+|+
T Consensus 205 d~~~~~~~~~~~~~~~-----~i~~~~~~~~ 230 (289)
T cd00200 205 DLSTGKCLGTLRGHEN-----GVNSVAFSPD 230 (289)
T ss_pred ECCCCceecchhhcCC-----ceEEEEEcCC
Confidence 9999888887765544 3456667663
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.54 E-value=9e-14 Score=145.73 Aligned_cols=172 Identities=19% Similarity=0.261 Sum_probs=122.5
Q ss_pred eeccCCCCceEEEEecCCCC------------cccccCcccCCCCcEEEeccCCCcEEEEecCC-CCCCCCccc-----c
Q 006229 474 LQHNGASSKSLLMFGSDGMG------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG-----R 535 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d-~~d~~d~~~-----~ 535 (655)
.+.+++.|.+++.|..+... ...+-+......+..+++||+|.++++|.... ..+...... .
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 67778888999988766421 11222223345556788999999999997222 111111000 0
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--------------------------
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-------------------------- 589 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~-------------------------- 589 (655)
-.......+..++..+.||+.+|.+|.|++ ...+++++.|.+||+||+.++.+
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 011112334557788999999999999987 66888999999999998765422
Q ss_pred ------------------EEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-EEEEEecccceeeeec
Q 006229 590 ------------------KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENVR-KLTFICCYKCIFVSTA 646 (655)
Q Consensus 590 ------------------l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg~-~v~~l~~~~~~v~s~~ 646 (655)
..+|.||...|.+|.|+|... .|+|||.|+++++||+|+.+ .+..+..|...+.++.
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence 346667999999999999776 48999999999999999887 8899999988776543
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.53 E-value=8e-14 Score=148.85 Aligned_cols=139 Identities=21% Similarity=0.361 Sum_probs=105.7
Q ss_pred ceeccCCCCceEEEEecCCCCc---ccccCcccCCC-------------CcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS---LTSAPNQLTDM-------------DRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~---lasss~~l~~~-------------~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
..+.+++.+..+..|+...... ...+...+.++ ..++++++.|+.+.+|+.+..
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---------- 260 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---------- 260 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC----------
Confidence 4566777888888888776433 11111122222 244567777888888855431
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCC-CEEE
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSL-SRLA 613 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg-~~La 613 (655)
+-+......+|++.|.||+|+| ++.+|||||.|++|+|||++.. .++.++.+|.+.|.+|.|+|+. ..||
T Consensus 261 -------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 261 -------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred -------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 2244566789999999999999 7779999999999999999876 4788999999999999999965 5799
Q ss_pred EEeCCCcEEEEECCC
Q 006229 614 TSSADRTVRVWDTEN 628 (655)
Q Consensus 614 SgS~DgtVrVWDl~t 628 (655)
|++.|+++.|||+..
T Consensus 334 SSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSR 348 (422)
T ss_pred ecccCCcEEEEeccc
Confidence 999999999999973
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.53 E-value=4.8e-14 Score=144.51 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=134.4
Q ss_pred CCCCCCCceeccCCCCceEEEEecCC-----------------C-C--------cccccCcccCCCCcEEEeccCCCcEE
Q 006229 466 GDVISRPTLQHNGASSKSLLMFGSDG-----------------M-G--------SLTSAPNQLTDMDRFVDDGSLDDNVE 519 (655)
Q Consensus 466 g~~~s~~~~~~s~S~d~s~l~ws~dg-----------------~-~--------~lasss~~l~~~~~~LasGS~D~tV~ 519 (655)
+..++++.+..+++.|.++.+++.+. . - .--+....|.+.+..|++||.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 34467778888888888888887762 0 0 01122335677778899999999999
Q ss_pred EEecCCCC----------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEE
Q 006229 520 SFLSPDDA----------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571 (655)
Q Consensus 520 vW~s~d~~----------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLa 571 (655)
+|+..... ...-.+.++.|+.+..++-.-..-..|++.|++|.+|+.|++.+
T Consensus 198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv 277 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV 277 (430)
T ss_pred EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence 99655432 11122336666665544443334457999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEec-ccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 572 TGGHDKKAVLWCTESFTVKSTLE-EHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 572 Sgs~DgtVrIWDl~t~~~l~tl~-gH~~-~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
||+.||.|||||=-+.+|+.++. +|.+ .|++..|..+++||+|++.|.+|++|.+.+++++..+.+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 99999999999999999999995 6754 6999999999999999999999999999999999988765
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.53 E-value=2.8e-13 Score=161.13 Aligned_cols=180 Identities=14% Similarity=0.052 Sum_probs=131.1
Q ss_pred ceeccCCCCceEEEEecCCCCcc--------cccCcccCC-CCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+++++.++++.+|+......+ .+....+.+ .+.+|++|+.|++|++|+...+.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 46777888999999987642211 122223443 45789999999999999876532
Q ss_pred ----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEE
Q 006229 528 ----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKS 591 (655)
Q Consensus 528 ----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t------~~~l~ 591 (655)
...+..+++|++.... ..+..+.+|...|.++.|. ++.+|++++.|++|+|||++. ..++.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 1123445666665431 1345667999999999997 788999999999999999974 36788
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc--------eeeeeceeeEEEecC
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC--------IFVSTAIGSCFFAPT 655 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~--------~v~s~~Vss~~F~P~ 655 (655)
++.+|...|++++|+|++.+|++|+.|++|+||+......+..+..... ......|.+++|+|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 9999999999999999999999999999999999887655443322110 011234788999885
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.53 E-value=1.3e-14 Score=156.38 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=97.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEe--ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~--l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
..+.++|.|+++|+|+....+. ....+.. ..+..-.|+.|+|++||++||+|+.||.|-+||.
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~---------------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKS---------------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred cceEEecCCCcEEEEecCCchh---------------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 3466888999999997665521 1122221 1234456899999999999999999999999998
Q ss_pred CCCeE---EEEecccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 585 ESFTV---KSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~t~~~---l~tl~gH~~--~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..... ...-.+|.. .|+||.|++||++|+|-|.|.++||||++.. +++....+.-.. ..-.+|+|+|+
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~---~~~tdc~FSPd 420 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP---FPGTDCCFSPD 420 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc---CCCCccccCCC
Confidence 65432 233358988 9999999999999999999999999999975 455555444333 34558999996
No 64
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.52 E-value=8e-14 Score=146.68 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=105.4
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~ 585 (655)
..||+||.|.+|.+|..++..-..+ ....+..+.+|...|-.|.|+|. .+.|+|+|.|.+|.|||+.
T Consensus 95 ~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 95 CVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred ceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 6799999999999998777632111 12567889999999999999994 5599999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++.+-++. |.+.|++++|+.||.+|+|.|.|+.|||||.++++.+..-.+|.
T Consensus 163 tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 163 TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 999998988 99999999999999999999999999999999999988776654
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.52 E-value=3.7e-13 Score=160.13 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=114.7
Q ss_pred CCCceeccCCCCceEEEEecCCC---Cc-----c---c----ccCcccC-CCCcEEEeccCCCcEEEEecCCCCCCCCcc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGM---GS-----L---T----SAPNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRV 533 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~---~~-----l---a----sss~~l~-~~~~~LasGS~D~tV~vW~s~d~~d~~d~~ 533 (655)
++...+++++.++.+.+|+.... +. . . +....+. ....+|++++.|++|++|+...+
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------- 565 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------- 565 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-------
Confidence 34456677778888888875321 00 0 0 0011111 22467888888888888854433
Q ss_pred ccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEc-CCCCE
Q 006229 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSR 611 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafs-Pdg~~ 611 (655)
..+..+.+|.+.|++|+|+| ++.+|+||+.|++|+|||++++.++.++..| ..|++++|+ +++.+
T Consensus 566 ------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~ 632 (793)
T PLN00181 566 ------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRS 632 (793)
T ss_pred ------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCE
Confidence 46677889999999999997 8899999999999999999999999888755 689999995 57999
Q ss_pred EEEEeCCCcEEEEECCCCe-EEEEEecccceee
Q 006229 612 LATSSADRTVRVWDTENVR-KLTFICCYKCIFV 643 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~-~v~~l~~~~~~v~ 643 (655)
|++|+.|++|++||++++. .+..+.+|...+.
T Consensus 633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred EEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 9999999999999998765 4566666655443
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=1.8e-13 Score=136.05 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=122.0
Q ss_pred CCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
-+++...+++.++++..|+|.....+ .+....+...+.-+++|+.|+.|.+|++.++
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--------------- 91 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--------------- 91 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC---------------
Confidence 34577888899999999999752111 1111122222244567777888888866655
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t--~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+.++.+++|.+.|+.|.|+.+...+++|+.|.+||+||.++ .+++..|..-.+.|.+|... +..|++||.||
T Consensus 92 ----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 92 ----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 78899999999999999999999999999999999999975 57888999999999999886 67899999999
Q ss_pred cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++|.||+|.|.....+.++ .|+++.|+|+
T Consensus 166 tvRtydiR~G~l~sDy~g~-------pit~vs~s~d 194 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH-------PITSVSFSKD 194 (307)
T ss_pred cEEEEEeecceeehhhcCC-------cceeEEecCC
Confidence 9999999998776544433 4556666654
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.51 E-value=6.4e-14 Score=158.65 Aligned_cols=168 Identities=20% Similarity=0.187 Sum_probs=131.4
Q ss_pred CceeccCCCCceEEEEecCCCC------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------ 527 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------ 527 (655)
...+.+++.|++..+|+..... ....+...+.-....+.+||.|.+|++|....+.
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 3567888889999999854311 1122223444444567788999999999877654
Q ss_pred ------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCE
Q 006229 528 ------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWI 600 (655)
Q Consensus 528 ------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~I 600 (655)
...+..+++|++. +++++..+.+|+..|.++.+... ..+++|+.|++|++||+++. +|+.++.+|...|
T Consensus 341 ~~~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPR---TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred CCEEEEEecCceEEEEEhh---hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 1223345777766 56899999999999999988755 89999999999999999999 9999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-ccceeeee
Q 006229 601 TDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC-YKCIFVST 645 (655)
Q Consensus 601 tsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~-~~~~v~s~ 645 (655)
.++.+. +.+|++++.|++|++||+.+++|++++.+ +...+...
T Consensus 417 ~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 417 SSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL 460 (537)
T ss_pred cccccc--cceeEeccccccEEEeecccCceeeeeccCCcccEEEe
Confidence 887764 78999999999999999999999999988 33433333
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=9.4e-14 Score=155.21 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=136.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc----------------cc----ccCcccCCCCcEEEeccCCCcEEEEecCCCCC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS----------------LT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD 528 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~----------------la----sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d 528 (655)
.++.....+++.|+++..|+-.-... +- +....+.+.+++|+.+-.|.+|++|+..+
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---
Confidence 45667788888999999987532100 00 11124477788999999999999996533
Q ss_pred CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC
Q 006229 529 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (655)
Q Consensus 529 ~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd 608 (655)
++.+-.+.||.-+|.|++.|||+++|+|||.|+.|+||-++=|.|.+.|-+|.+.|.+|.|.|.
T Consensus 540 ----------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 540 ----------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred ----------------eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 3567788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 609 LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 609 g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
...++|||.|+.||-||-...+++..+.+|...+.|.++.
T Consensus 604 ~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 9999999999999999999999999999999888877664
No 69
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=7.2e-14 Score=156.65 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=120.0
Q ss_pred ceeccCCCCceEEEEecCCCC--cc---------cccCcccC-CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--SL---------TSAPNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--~l---------asss~~l~-~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++++++..+.+.+|+..... .+ .+...+|. ....+|.+||-|++|++|+....
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------------- 166 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------------- 166 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--------------
Confidence 567777778888888886621 11 11111222 22267899999999999976554
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
+.+.++.+....|.+|.|+| ++..|+++.+.|.|.+||++- .++...|.+|.+.|.||.|+|++.+|||||.|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 23344556678899999999 788999999999999999985 45777889999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.|||||+.+.+....++.+ ....|..+.|-|.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn----Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN----TIAPVGRVKWRPA 274 (839)
T ss_pred ccEEEEeccCCCccceeEEe----ecceeeeeeeccC
Confidence 99999999865443322222 2345678888874
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.51 E-value=3.1e-13 Score=136.49 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
++|.+++.|.++.+|.+.++ +.+.++.||++.|.||+.+.+.+.|+||+.|.+++|||+++
T Consensus 23 DLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 48999999999999988777 57889999999999999999999999999999999999998
Q ss_pred CeEEEEecc-----------------------------------------------------cCCCEEEEEEcCCCCEEE
Q 006229 587 FTVKSTLEE-----------------------------------------------------HTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 587 ~~~l~tl~g-----------------------------------------------------H~~~ItsVafsPdg~~La 613 (655)
|+++.+++- +.+.|+.+-|.|.+.+|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 876654431 456788899999999999
Q ss_pred EEeCCCcEEEEECCCCeEE-EEEecccceeeeeceeeEEEecC
Q 006229 614 TSSADRTVRVWDTENVRKL-TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v-~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|..||.|.+||+++|..+ .....|.. .|+++.|+|+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~-----~Ind~q~s~d 201 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSS-----KINDLQFSRD 201 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhcc-----ccccccccCC
Confidence 9999999999999998544 33344433 5667777664
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.50 E-value=9.2e-14 Score=160.85 Aligned_cols=142 Identities=21% Similarity=0.338 Sum_probs=113.6
Q ss_pred ccCCCCcEEEecc--CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS--~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
++.+....+++|+ .|+.+++|....-. .....++.. -.+.+.....|.+.|+|+.|++||++||+||+|+.
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl----~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVL----DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred EecCCceeEecCCccccccceeecccccc----chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 3445556789999 89999999321110 001111111 23466777899999999999999999999999999
Q ss_pred EEEEeCCC------------------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 579 AVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 579 VrIWDl~t------------------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|-||+... .+++.++.+|+..|.+|+|+|++.+|+|+|.|++|.|||.++++++..+.+|..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99998762 357889999999999999999999999999999999999999999999999987
Q ss_pred eeeeeceeeEEEec
Q 006229 641 IFVSTAIGSCFFAP 654 (655)
Q Consensus 641 ~v~s~~Vss~~F~P 654 (655)
.+. .+.|.|
T Consensus 173 ~VK-----Gvs~DP 181 (942)
T KOG0973|consen 173 LVK-----GVSWDP 181 (942)
T ss_pred ccc-----ceEECC
Confidence 655 667776
No 72
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-14 Score=160.12 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=118.8
Q ss_pred ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC
Q 006229 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (655)
Q Consensus 497 sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D 576 (655)
+-+..|+..+.+|+.|+.|++|++|+.... +.++++.+|...+.+|+|+|-+.++++|+.|
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeA-------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEA-------------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTD 133 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhh-------------------hhhhhhhccccCcceeeeccceEEecccccc
Confidence 344466777788999999999999965433 5778999999999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+-+++||++..-|.+++.+|...|.+++|+|+|++++++++|.+|+|||+..|+.+..|..|...+.. +.|||
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s-----le~hp 206 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS-----LEFHP 206 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc-----cccCc
Confidence 99999999988899999999999999999999999999999999999999999999999988776653 34665
No 73
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.3e-14 Score=158.30 Aligned_cols=159 Identities=23% Similarity=0.353 Sum_probs=130.4
Q ss_pred ceeccCCCCceEEEEecCCC--------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~--------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
.++..++.++++.+|+.+.. +.+......|.+...|.+.||.|..+++|+..--
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------------------ 144 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------------------ 144 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc------------------
Confidence 46667778889999998752 1233444567888889999999999999944321
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
.|+..+.+|...|.++.|+|+|+|+++|++|.+|+|||...|+.+..|.+|++.|.++.|+|..-++++||.|++|++|
T Consensus 145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 3778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++.+.+...... ...|-+..|+|+
T Consensus 224 dletfe~I~s~~~~-----~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 224 DLETFEVISSGKPE-----TDGVRSLAFNPD 249 (825)
T ss_pred ccceeEEeeccCCc-----cCCceeeeecCC
Confidence 99987766544332 233455666654
No 74
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.49 E-value=7.4e-13 Score=143.50 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=127.3
Q ss_pred cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------------------CCCCccccccccCCCc
Q 006229 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------------------DPRDRVGRSAEVGKGF 543 (655)
Q Consensus 494 ~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------------------d~~d~~~~l~d~~~~~ 543 (655)
...++..++.+.+.++++|-.-++||+|+..... +++.++++.+--.++
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 4455566778888899999999999999766532 222232222222222
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..+..+.||...|++|+|-|.-. .++||++|.+|-+|+=...+...++..|+..|+||+|+|||.+++|++.||+|.
T Consensus 138 --~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 --NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred --CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 34677889999999999999544 899999999999999988999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|||=.+|+.+..|.. ...+...|..+.|+||
T Consensus 216 iyDGktge~vg~l~~--~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 216 IYDGKTGEKVGELED--SDAHKGSIFALSWSPD 246 (603)
T ss_pred EEcCCCccEEEEecC--CCCccccEEEEEECCC
Confidence 999999999999974 3445666789999997
No 75
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=144.07 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=106.5
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
..++.+.|+|...+ .+.+|-.-+.|++|-..++. |.+ .-+.+.+|+..|.
T Consensus 212 ~EGy~LdWSp~~~g--------------~LlsGDc~~~I~lw~~~~g~---------W~v-------d~~Pf~gH~~SVE 261 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTG--------------RLLSGDCVKGIHLWEPSTGS---------WKV-------DQRPFTGHTKSVE 261 (440)
T ss_pred ccceeeeccccccc--------------ccccCccccceEeeeeccCc---------eee-------cCccccccccchh
Confidence 45667777774442 34566566778888554431 222 2244568999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEE
Q 006229 560 SCHFSPD-GKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---VRKL 632 (655)
Q Consensus 560 sl~fSpd-G~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t---g~~v 632 (655)
.++|||. ...|+|||.|++|||||++.+ .++.+ ++|...|+.|.|+..-.+||||+.||+++|||+|. +..+
T Consensus 262 DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred hhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence 9999994 459999999999999999988 45544 89999999999999888999999999999999985 4556
Q ss_pred EEEecccceeeeeceeeEEEec
Q 006229 633 TFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 633 ~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..|..|. ..|+++.|||
T Consensus 341 A~fk~Hk-----~pItsieW~p 357 (440)
T KOG0302|consen 341 ATFKYHK-----APITSIEWHP 357 (440)
T ss_pred eeEEecc-----CCeeEEEecc
Confidence 6777665 4567899998
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.49 E-value=2.3e-13 Score=142.70 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=104.2
Q ss_pred CcEEEeccCCCcEEEEecCCCC-------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 506 DRFVDDGSLDDNVESFLSPDDA-------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~-------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
...+.++|+|.+|+.|+...+. ...++.+++||...+..-.....+.+|++-|.+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 4567788889999999776654 334666788888887666778899999999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 561 CHFSP-DGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 561 l~fSp-dG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.|+| +...|++|++|+++++||+++.+ .+..+.+|.+.|.++.|. ++.+|+|||.|.+|+|+.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999 55689999999999999999988 899999999999999998 47899999999999998654
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.49 E-value=3.7e-13 Score=142.35 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=131.7
Q ss_pred CCCCCceeccCCCCceEEEEecCCCCc---c-----cccCccc-CCCCcEEEeccCCCcEEEEecCCCC-----------
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMGS---L-----TSAPNQL-TDMDRFVDDGSLDDNVESFLSPDDA----------- 527 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~~---l-----asss~~l-~~~~~~LasGS~D~tV~vW~s~d~~----------- 527 (655)
..++.......+.++.+.+|+.+.... + .++...+ ..+.+ +++|+.|.+|+.|+.....
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c 305 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQC 305 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccc
Confidence 344456677778889999998876211 1 1111122 22223 8899999999999655432
Q ss_pred ------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 528 ------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
+-.+..+++||+..+ .++.....+. .|++|..+++|..|.+++.|.++++.|+++...+.++.+
T Consensus 306 nDI~~~~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 306 NDIVCSISDVISGHFDKKVRFWDIRSA---DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred cceEecceeeeecccccceEEEeccCC---ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 111233466666554 3444555554 899999999999999999999999999999988888763
Q ss_pred ----cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 596 ----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 596 ----H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
....++.+.|||++.|+++||.||.|+||++.++++...+...++.. .|.+|.|+|.
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~---aI~s~~W~~s 442 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA---AITSLSWNPS 442 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc---ceEEEEEcCC
Confidence 23348999999999999999999999999999999998887655432 6889999984
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.46 E-value=3.9e-13 Score=137.90 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=104.0
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEeecCCCCCe
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPASTSKV 558 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~-~t~~~v~~l~gH~~~V 558 (655)
.+..+-.|++||. ++++||.|.+|+++++...- .+. ..+....... ..-..++++..|.+.|
T Consensus 113 ~~cR~aafs~DG~---------------lvATGsaD~SIKildverml-aks-~~~em~~~~~qa~hPvIRTlYDH~dev 175 (430)
T KOG0640|consen 113 SPCRAAAFSPDGS---------------LVATGSADASIKILDVERML-AKS-KPKEMISGDTQARHPVIRTLYDHVDEV 175 (430)
T ss_pred cceeeeeeCCCCc---------------EEEccCCcceEEEeehhhhh-hhc-chhhhccCCcccCCceEeehhhccCcc
Confidence 3455556666655 99999999999999665221 000 0111111111 1124789999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------------C--------------------eEEEEe-
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTES------------------------F--------------------TVKSTL- 593 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t------------------------~--------------------~~l~tl- 593 (655)
+++.|+|...+|++|+.|++|++||+.. | .|....
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999999999999998642 1 111111
Q ss_pred --cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 594 --EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 594 --~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..|++.|++|.+++.+++.+|||.||.|||||=-+++|+.+|..
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 25899999999999999999999999999999999999988853
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=128.81 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=88.6
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--c-----CCCEEEEEEcCCCCEEEEEeCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H-----TQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H-----~~~ItsVafsPdg~~LaSgS~D 618 (655)
..+..+.+|++.|.++ ++-+|-.|++|+.|++||+||++...++.++.. | +..|.+|+..|.|++|+||-.|
T Consensus 174 ~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 174 QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 4566788999999877 344688999999999999999999889888742 2 3579999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.+||++.++.+..|..|... |.++.|+|.
T Consensus 253 ssc~lydirg~r~iq~f~phsad-----ir~vrfsp~ 284 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPG 284 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccc-----eeEEEeCCC
Confidence 99999999999999999888654 557788873
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.46 E-value=2.7e-13 Score=153.05 Aligned_cols=183 Identities=20% Similarity=0.173 Sum_probs=132.8
Q ss_pred cCCcccccCCCccccCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccCCCC
Q 006229 402 AGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASS 481 (655)
Q Consensus 402 ~~g~~~~~gs~~~s~~~~~~~~~~q~grkRk~p~sSs~panSsgt~~t~~pSpss~stpst~tpg~~~s~~~~~~s~S~d 481 (655)
--|+|++.|+..+.++ .++-|+|.+|+....+ |+. ..+.+ .-..........+++.+
T Consensus 458 ~CGNF~~IG~S~G~Id----~fNmQSGi~r~sf~~~--~ah---------------~~~V~--gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 458 FCGNFVFIGYSKGTID----RFNMQSGIHRKSFGDS--PAH---------------KGEVT--GLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccCceEEEeccCCeEE----EEEcccCeeecccccC--ccc---------------cCcee--EEEecCCCceEEEccCc
Confidence 4589999999999888 8899999999877311 000 00000 00011122456666677
Q ss_pred ceEEEEecCCCCc-----ccccC--cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC
Q 006229 482 KSLLMFGSDGMGS-----LTSAP--NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (655)
Q Consensus 482 ~s~l~ws~dg~~~-----lasss--~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH 554 (655)
+.+..|+-.+... +.+.. ..+......++.+..|-.|++++. .+.+.++.+.||
T Consensus 515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~-------------------~t~kvvR~f~gh 575 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV-------------------VTRKVVREFWGH 575 (910)
T ss_pred ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc-------------------hhhhhhHHhhcc
Confidence 7777787766421 11111 122344455667777777777743 234678999999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTE 627 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~ 627 (655)
++.|++++|||||+||++++.|++||+||+.++.++..+. -+..+++|.|+|+|.+|||+..|. -|.+|.=.
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999999999999999999999999999998775 678899999999999999999994 59999654
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.45 E-value=9.7e-13 Score=146.31 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=119.9
Q ss_pred ceeccCCCCceEEEEecCCCCcc------cccCcccC-CCCcEEEeccCCCcEEEEecCCCC------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL------TSAPNQLT-DMDRFVDDGSLDDNVESFLSPDDA------------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~-~~~~~LasGS~D~tV~vW~s~d~~------------------ 527 (655)
-.+..++.|....+|.+++...+ -...+.+. ..+..+.+||+|.|+++|...+-.
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCC
Confidence 34666778888888888773221 11122222 222337888899999888322211
Q ss_pred -----CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE
Q 006229 528 -----DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602 (655)
Q Consensus 528 -----d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its 602 (655)
...|..+++|.-. +.++++.+|++-|+.+++-+++ .|+||+.||.||+||+ +++++..+.||+..|++
T Consensus 152 ~~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred CcEEeccCcceeeeccCC-----chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 3345555666442 4678899999999999999765 5789999999999999 78999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+...+++..++|+++|+++|||+.. +|+..+.....
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt 260 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT 260 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence 9988999999999999999999987 77777766553
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6e-13 Score=147.08 Aligned_cols=150 Identities=22% Similarity=0.324 Sum_probs=114.3
Q ss_pred cCcccCCCCcEEEeccCCCcEEEEecCCCCCC-------------------------CCccccccccCCCceeeeEEeec
Q 006229 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------------------------RDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 498 ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~-------------------------~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
++..+...+.+|+.|..+++|.+|+....... +++.+..+|+..... .+.++.
T Consensus 221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~--~~~~~~ 298 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH--VVSTLQ 298 (484)
T ss_pred EEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchh--hhhhhh
Confidence 34455666789999999999999975544311 111111222221111 122477
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEe--CCCcEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSS--ADRTVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS--~DgtVrVWDl~tg 629 (655)
+|...|..+.|++|+++||+|+.|..|.|||......+.++.+|+..|.+++||| ....||||+ .|++|++||+.++
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 8999999999999999999999999999999988899999999999999999999 567899877 5999999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++..+.++ .-|+++.|+|.
T Consensus 379 ~~i~~vdtg------sQVcsL~Wsk~ 398 (484)
T KOG0305|consen 379 ARIDSVDTG------SQVCSLIWSKK 398 (484)
T ss_pred cEecccccC------CceeeEEEcCC
Confidence 999766544 34678888763
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=1.5e-12 Score=140.21 Aligned_cols=160 Identities=22% Similarity=0.241 Sum_probs=117.4
Q ss_pred CCCCCceeccCCCCceEEEEecCCCC--------cccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.-+++.+++.+...+.+.+|+..... ...+....|.+.+ ..+++|++|+.+++|+....
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------------ 143 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------------ 143 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------------
Confidence 34566777777777888888843311 1111122333333 45778888888888855443
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.+...+.+|++.|.|.+|+| .+++++|||+||+||+||+++. ..+.++. |..+|-+|.|-|.|..|||++
T Consensus 144 -------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 144 -------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred -------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence 24567899999999999999 6779999999999999999977 6666765 999999999999999999998
Q ss_pred CCCcEEEEECCCCeE-EEEEecccceeeeecee
Q 006229 617 ADRTVRVWDTENVRK-LTFICCYKCIFVSTAIG 648 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~-v~~l~~~~~~v~s~~Vs 648 (655)
.. .|||||+.+|.. +..+..|...+.|..+.
T Consensus 216 Gn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 216 GN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred CC-eEEEEEecCCceehhhhhcccceEEEEEee
Confidence 65 899999985544 44444466666665543
No 84
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.43 E-value=9.3e-14 Score=149.23 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=95.6
Q ss_pred eeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
+.+..+.+|+..|+++.|.| .+++|++++.|+.|+||++.. ++|+++|.||...|.+++|+.+|..++|+|.|++||+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 46788999999999999999 999999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+++|.|+..|..... +.++.||||
T Consensus 285 wDtETG~~~~~f~~~~~------~~cvkf~pd 310 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKV------PTCVKFHPD 310 (503)
T ss_pred eccccceEEEEEecCCC------ceeeecCCC
Confidence 99999999988876544 446888886
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=9.3e-13 Score=135.60 Aligned_cols=112 Identities=19% Similarity=0.377 Sum_probs=99.8
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLW 582 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~--lLaSgs~DgtVrIW 582 (655)
..+|+++||.|.+|++|+...- ..+..+-.|.+.|++|.|.++-. .|++|+.||.|.+|
T Consensus 52 s~~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cceeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 3489999999999999965443 46677788999999999999765 99999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++....++.++++|+..|+.|+.+|.+++.+|.+.|+++|+||+-+|+.-..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 99999999999999999999999999999999999999999999887654433
No 86
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=1.8e-12 Score=132.32 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=99.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEe
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp---dG~lLaSgs~DgtVrIWD 583 (655)
-.+.++|+|.++++|+.... .+.-.| ...+.|.+-++|| ..-++|+|..|-.|++.|
T Consensus 115 GmFtssSFDhtlKVWDtnTl-------------------Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTL-------------------QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ceeecccccceEEEeecccc-------------------eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 46778999999999965543 222111 2346788888888 234888888999999999
Q ss_pred CCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC-eEEEEEeccc---------ceeeeeceeeEEE
Q 006229 584 TESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENV-RKLTFICCYK---------CIFVSTAIGSCFF 652 (655)
Q Consensus 584 l~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg-~~v~~l~~~~---------~~v~s~~Vss~~F 652 (655)
+.+|.+.++|.||.+.|.+|.|+|...+ |+|||.||+||+||++.. .|+..+.-|. ...+...|..++|
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence 9999999999999999999999998876 889999999999999865 6777777665 2334444666666
Q ss_pred ec
Q 006229 653 AP 654 (655)
Q Consensus 653 ~P 654 (655)
..
T Consensus 255 tS 256 (397)
T KOG4283|consen 255 TS 256 (397)
T ss_pred cc
Confidence 53
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=7.4e-13 Score=142.57 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=100.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtV 579 (655)
.|...++++++|...|.|++|+.. +...++.+.+|+.+|..+.|+| |+..|++|+.|+.+
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k-------------------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMK-------------------SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVV 135 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccc-------------------cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceE
Confidence 455566899999999999999411 1234677889999999999999 56689999999999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-eEEEEEeccc
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENV-RKLTFICCYK 639 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~ 639 (655)
++||+.+......+.+|++.|.|.+|+|-. ..++|||.||+||+||++.. ..+.++.++.
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 999999998877999999999999999964 47999999999999999976 6667776554
No 88
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=137.37 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=88.9
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+++||.|++|++|+.+.+. ...++.+ ++|.+.|+-|.|+.+-.+||+|+.||+++|||++.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~----------------~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGP----------------KKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred ceEEeeecCceEEEEEecCCC----------------ccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhh
Confidence 678999999999999776651 1123333 78999999999999888999999999999999975
Q ss_pred ---CeEEEEecccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 006229 587 ---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 587 ---~~~l~tl~gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~ 627 (655)
+.++.+|+-|...|+||.|+|. ...|+.+|.|..|.|||+.
T Consensus 334 ~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 334 FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 4678899999999999999994 4678888999999999986
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=1.4e-12 Score=134.07 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=133.7
Q ss_pred ceeccCCCCceEEEEecCCCCc------c--cccCcccCCCCcEEEeccCCCcEEEEe------cCCCCCCC--------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS------L--TSAPNQLTDMDRFVDDGSLDDNVESFL------SPDDADPR-------- 530 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~------l--asss~~l~~~~~~LasGS~D~tV~vW~------s~d~~d~~-------- 530 (655)
.++.+.+.|.+..+|+.+.... . .+.+..|...+.+++++|.|++..+|- .+......
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 4667778899999999876211 1 123446677778899999999999994 22211101
Q ss_pred ---Cccccccc---cCCCcee-eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEE
Q 006229 531 ---DRVGRSAE---VGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (655)
Q Consensus 531 ---d~~~~l~d---~~~~~t~-~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsV 603 (655)
|.-.+..+ ..++.+. .++..+.+|.+.|.|++|-..|..++++++|.+..+||+++++.+..|.||....+.+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 11111111 2233333 3677899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecccceeeeec
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~~~v~s~~ 646 (655)
+-+|.-++++|+|.|.+.|+||++. -..+..|.+|...+.+..
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE
Confidence 9999999999999999999999984 345678888887665443
No 90
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.40 E-value=4.4e-13 Score=147.20 Aligned_cols=111 Identities=23% Similarity=0.327 Sum_probs=96.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
..|+.++.|+.|++|....+... ..+......+.+|..+|+++.|+| -...|+++++|.+|+|||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLP------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCC------------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 56899999999999966554211 112345677889999999999999 56699999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+++....|.||++-|.+++|+|+|+++||.|.||+||||..+++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 99999999999999999999999999999999999999998864
No 91
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=2.7e-12 Score=135.81 Aligned_cols=132 Identities=24% Similarity=0.398 Sum_probs=109.6
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-- 585 (655)
++++|+.|..|++|....+.... ......-+..+..|...|++|.|+|+|.+||||+.++.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 89999999999999554442111 113456678889999999999999999999999999999999543
Q ss_pred ------C--------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEE
Q 006229 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCF 651 (655)
Q Consensus 586 ------t--------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~ 651 (655)
+ ....+.+.+|...|++++|+|++.++++++.|.++++||++.|..+..+..|...+. .++
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-----gva 172 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-----GVA 172 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-----eee
Confidence 2 345678889999999999999999999999999999999999999999888876554 455
Q ss_pred Eec
Q 006229 652 FAP 654 (655)
Q Consensus 652 F~P 654 (655)
|.|
T Consensus 173 wDp 175 (434)
T KOG1009|consen 173 WDP 175 (434)
T ss_pred cch
Confidence 554
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=2.4e-12 Score=146.08 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=94.2
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrI 581 (655)
|-.+.||.+.|.|+|||+|..... .|+.+| .|.+.|+||+|+| |.++|++|+-|++|||
T Consensus 377 WSKn~fLLSSSMDKTVRLWh~~~~-------------------~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 377 WSKNNFLLSSSMDKTVRLWHPGRK-------------------ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred cccCCeeEeccccccEEeecCCCc-------------------ceeeEE-ecCCeeEEEEecccCCCcEeecccccceEE
Confidence 445588999999999999943221 455544 6999999999999 9999999999999999
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
|++...+.+ .+..-.+.|++|||+|||.+.+.|+.+|.+++|+++..+.+..+
T Consensus 437 WsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 437 WSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999886655 45556689999999999999999999999999999987766544
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=1.5e-12 Score=145.81 Aligned_cols=141 Identities=22% Similarity=0.268 Sum_probs=121.1
Q ss_pred CCCCceeccCCCCceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
+++..+++.+--+.++.+|..|. .+.+.+.+.++.+.+..++|||.|++|++|-..=|
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-------------- 582 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------------- 582 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc--------------
Confidence 34556666666778888887776 22455667788899999999999999999922211
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.|.+.+.+|.+.|.+|.|-|+..+++|+|.|+.|+-||-+..+++.++.+|...|+|++.+|+|.+++|+|.|.+
T Consensus 583 -----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 583 -----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred -----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC
Q 006229 621 VRVWDTEN 628 (655)
Q Consensus 621 VrVWDl~t 628 (655)
||+|.-..
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99998654
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.6e-12 Score=137.78 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=119.4
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
.++..+.....+.+|....... -.++...|.+.+..+.+||.|+.|.+|...+-.+ .....+
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~----------a~~~~~ 163 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS----------ADNDHS 163 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc----------cccCCC
Confidence 4555555777888888765221 2334446778888999999999999995544322 122224
Q ss_pred eeeEEeecCCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCe----------------------------------
Q 006229 545 FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT---------------------------------- 588 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG--~lLaSgs~DgtVrIWDl~t~~---------------------------------- 588 (655)
.+.+..+..|+-+|+++...+.| .+|+|+|.|.+||+||+..+.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence 56788889999999999888743 489999999999999865331
Q ss_pred -----------------------EEEEecccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 589 -----------------------VKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 589 -----------------------~l~tl~gH~~--~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.+..+.||.+ .|+|++++-||++|+||+.||.|+|||+.+..|++++...
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 2345567888 9999999999999999999999999999999999888743
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=2e-12 Score=136.78 Aligned_cols=124 Identities=20% Similarity=0.351 Sum_probs=104.6
Q ss_pred eeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
++.........+.|+++|+ ++|++|.|.++-+|....+. .++...++.+
T Consensus 219 il~~htdEVWfl~FS~nGk---------------yLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvg 267 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK---------------YLASASKDSTAIIWIVVYDV----------------HFKLKKTLVG 267 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe---------------eEeeccCCceEEEEEEecCc----------------ceeeeeeeec
Confidence 3344444555666666555 99999999999999554431 2567788999
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|..+|..|.||||.++|++|+.|..+++||+.+|.+.+.+. +|...+.|++|+|||..+++||.|++|..||++.
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 99999999999999999999999999999999999988774 5678999999999999999999999999999974
No 96
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=134.96 Aligned_cols=91 Identities=27% Similarity=0.441 Sum_probs=83.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..||.|++-|.+||+|+.||.|.|||+.|...-+.|.+|..+|+|||||+||+.|+|+|.|..|++||+..|.+++.+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ccceeeeeceeeEEEec
Q 006229 638 YKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 638 ~~~~v~s~~Vss~~F~P 654 (655)
...|..+.|||
T Consensus 106 ------~spv~~~q~hp 116 (405)
T KOG1273|consen 106 ------DSPVWGAQWHP 116 (405)
T ss_pred ------cCccceeeecc
Confidence 34566777887
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.37 E-value=1.8e-12 Score=129.93 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCCCceeccCCCCceEEEEecCCCC--------cc-cccCcccCCCCcEEEeccCCCcEEEEecCCCCCC----------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG--------SL-TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP---------- 529 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~--------~l-asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~---------- 529 (655)
..+...+.+++.++.+.+|+..... .. .+....+...+..+.+.+.|++||+|+..++...
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt 188 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT 188 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc
Confidence 3344556666666777776655411 00 0111111222344566689999999998887621
Q ss_pred --------CC------ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-c
Q 006229 530 --------RD------RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-E 594 (655)
Q Consensus 530 --------~d------~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~ 594 (655)
+. ..+.+|+... +..++.++- ...|.+...+|+...+++|+.|..++.||..++..+..+ +
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks---f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS---FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc---ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 11 1123343332 333433332 346889999999999999999999999999999999886 8
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 595 gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
+|.++|.||+|+|+|...++||.||+||||-+..+..
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999998875543
No 98
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=8.4e-13 Score=139.62 Aligned_cols=108 Identities=25% Similarity=0.430 Sum_probs=96.3
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t---~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
...+..++..|++.|.-|.||++|++|||++.|.++-||++.. .+.++++.||...|..|.|+||.++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 3456778889999999999999999999999999999998743 4678999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++||+.+|.+.+.+... ....+.+|+|.||
T Consensus 293 ~~lwDv~tgd~~~~y~~~----~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSG----LGFSVSSCAWCPD 323 (519)
T ss_pred eeeccCCcchhhhhcccC----cCCCcceeEEccC
Confidence 999999999999888655 2456789999997
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=9.2e-12 Score=137.80 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=115.4
Q ss_pred CCceeccCCCCceEEEEecCCCCc-ccccC------------------cccCCCCcEEEeccCCCcEEEEecCCCCCCCC
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS-LTSAP------------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRD 531 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~-lasss------------------~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d 531 (655)
...+.++++-|+.+++|+...... ++.+. .+..+.+..+++|+..+.+++|+....
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----- 203 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----- 203 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-----
Confidence 336778889999999999874211 11111 022333356788888888888854433
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~ 611 (655)
+.+-.++||+..|.++..+.||..++++|.|++|||||+..-+|+.++..|+..|+++..+|+-.+
T Consensus 204 --------------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 204 --------------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred --------------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 567778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 006229 612 LATSSADRTVRVWDTENV 629 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg 629 (655)
+++|+.||.|..=|+++.
T Consensus 270 vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEecCCCCcEEecccCCc
Confidence 999999999999999985
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=3e-12 Score=143.86 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=117.4
Q ss_pred CCCCCCCceeccCCCCceEEEEecCCCCc---ccccCc-----ccCCC-CcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 466 GDVISRPTLQHNGASSKSLLMFGSDGMGS---LTSAPN-----QLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 466 g~~~s~~~~~~s~S~d~s~l~ws~dg~~~---lasss~-----~l~~~-~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
.-.+..+.++.+++.|..+.+|+...... +.+.+. .|.+. ...++++...|.+.+|+..-.
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---------- 209 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---------- 209 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc----------
Confidence 33355668999999999999999876321 222222 22222 244677777788888855433
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCE-EEE
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSR-LAT 614 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~-LaS 614 (655)
.+++..+.+|.++|.||.|+|++.||||||.||+|+|||+.+.+......- ....|.+|+|.|+..+ |||
T Consensus 210 --------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 210 --------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred --------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence 246677889999999999999999999999999999999987654333332 3467999999998765 788
Q ss_pred EeC--CCcEEEEECCCC-eEEEEEecccceee
Q 006229 615 SSA--DRTVRVWDTENV-RKLTFICCYKCIFV 643 (655)
Q Consensus 615 gS~--DgtVrVWDl~tg-~~v~~l~~~~~~v~ 643 (655)
++. |..|+|||++.+ -...+|.+|+..+.
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCcccc
Confidence 774 888999999854 44577888877554
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.35 E-value=5e-12 Score=136.76 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=123.9
Q ss_pred ceeccCCCCceEEEEecCC--------------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 473 TLQHNGASSKSLLMFGSDG--------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg--------------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
....+++.|.++.+|+.+. ..++.++++.+.....+||.|+.||+|.+|....- +
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~------~----- 350 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR------T----- 350 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc------c-----
Confidence 5667888899999999876 22344556677788888999999999999953211 1
Q ss_pred cCCCceeeeEEeecCCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccC--CCEEEEEEcCCCCEEE
Q 006229 539 VGKGFTFTEFQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHT--QWITDVRFSPSLSRLA 613 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~--~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~--~~ItsVafsPdg~~La 613 (655)
+. ..+..-.+|.. .|+||.||+||++|++-|.|.++++||++.. +++.++.+-. -.-+.++|+|+.++|+
T Consensus 351 v~-----p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 351 VR-----PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred cc-----cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 11 12333457777 8999999999999999999999999999876 4666665543 3457899999999999
Q ss_pred EEeC------CCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 614 TSSA------DRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~------DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+. -|++.+||..+...+..+... ...|..|.|||.
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----~aSvv~~~Whpk 468 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----TASVVRCLWHPK 468 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCC-----CceEEEEeecch
Confidence 9874 567999999999888877654 334568999983
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.35 E-value=1.6e-12 Score=139.08 Aligned_cols=143 Identities=23% Similarity=0.340 Sum_probs=112.7
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC--CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~--~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
.+.+.+.++.+++-|++|--|....+.+.+...-+. ++. .+...++-+ ++|...|.|++.|+||+||++|+.|..
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCce
Confidence 344455688999999999999887775332211111 111 121122222 489999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
|.|||+++++.+.+|.+|.+.|.+++|......|+++|.|++|+||++.....+.++-+|...+..+.
T Consensus 226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999998888999999999999999998888877777776665444
No 103
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.35 E-value=4.4e-12 Score=127.91 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=95.2
Q ss_pred ceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEE
Q 006229 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (655)
Q Consensus 482 ~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl 561 (655)
...+.|+.+|. .+++|++|++|++|.+.-+. +...-..++|++.|-.+
T Consensus 23 v~Sv~wn~~g~---------------~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svdql 70 (313)
T KOG1407|consen 23 VHSVAWNCDGT---------------KLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVDQL 70 (313)
T ss_pred ceEEEEcccCc---------------eeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchhhh
Confidence 34566776655 78999999999999553331 11223456777778888
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCCCeE---------------------------------------------------
Q 006229 562 HFSP-DGKLLATGGHDKKAVLWCTESFTV--------------------------------------------------- 589 (655)
Q Consensus 562 ~fSp-dG~lLaSgs~DgtVrIWDl~t~~~--------------------------------------------------- 589 (655)
+|+| ...+|++++.|++||+||++.+++
T Consensus 71 ~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ 150 (313)
T KOG1407|consen 71 CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV 150 (313)
T ss_pred eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee
Confidence 8877 455788888888888887654322
Q ss_pred -------------------------------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 590 -------------------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 590 -------------------------------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.++++|...+.||.|+|+|++||+||.|..|.|||+...-|++.|.-+
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence 2344559999999999999999999999999999999998888887655
Q ss_pred cce
Q 006229 639 KCI 641 (655)
Q Consensus 639 ~~~ 641 (655)
+=.
T Consensus 231 dwp 233 (313)
T KOG1407|consen 231 DWP 233 (313)
T ss_pred cCc
Confidence 443
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=121.55 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=97.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
-.+++||-|.+|++|+...... ++..+.. +.. .. -.++.|.+|++.|.|++|++|..|..+.+||++.
T Consensus 195 ~m~~sgsqdktirfwdlrv~~~-----v~~l~~~----~~~-~g--lessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 195 AMFASGSQDKTIRFWDLRVNSC-----VNTLDND----FHD-GG--LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred cEEEccCCCceEEEEeeeccce-----eeeccCc----ccC-CC--cccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 5688999999999996544310 0000000 000 00 0236799999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEecccceeeeeceeeEEEecC
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV----RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg----~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+..|..|+..|.||+|+|...|++|||.|..|||=|+..- -.+..+..|... +.-|.|||.
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-----~i~~rwh~~ 330 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-----AIQCRWHPQ 330 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-----eEEEEecCc
Confidence 9999999999999999999999999999999999999998631 112223333332 336888884
No 105
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=7.3e-12 Score=136.19 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=90.9
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
++..+.-..+.|..++|+|||++||+.+.|+.+||+|.++.+++..++..-+...||+|+|||+||+||++|-.|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 44444445668999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCeEEEEEecccceeeeeceeeEEEec
Q 006229 627 ENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..++.|..-.+|.+.|. .++|.|
T Consensus 362 ~erRVVARGqGHkSWVs-----~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVS-----VVAFDP 384 (636)
T ss_pred ccceEEEecccccccee-----eEeecc
Confidence 99999988888887765 455554
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.2e-12 Score=126.42 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=109.0
Q ss_pred CCCceeccCCCCceEEEEecCCCC--------ccccc--CcccC--CCCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG--------SLTSA--PNQLT--DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~--------~lass--s~~l~--~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
..+.++++++.|+.+++|.-.+.. ..-.+ +..+. ..+-.|+++|.|++|.++...+.. .|
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g--------~w 139 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG--------GW 139 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC--------Cc
Confidence 345789999999999999987621 11122 22333 334668999999999999554431 11
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEE
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPD---G-----------KLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT 601 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpd---G-----------~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~It 601 (655)
...++...|.-.|++++|.|- | +.|++|+.|..|+||+.+.+ +..++|.+|++.|+
T Consensus 140 --------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 140 --------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred --------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 223445689999999999994 5 67999999999999998765 45567999999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEECC
Q 006229 602 DVRFSPSL----SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 602 sVafsPdg----~~LaSgS~DgtVrVWDl~ 627 (655)
+|+|+|.- .+|||||.||+|.||-.+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 99999964 479999999999999876
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=6e-12 Score=129.70 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=119.3
Q ss_pred CCCCceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
+.+...+++++.|+.+.+|..... ..-+++...|...+.-+.++|+|.+|++.-..++
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------------- 338 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------------- 338 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-------------
Confidence 344466788888999999987641 1223444455666667788889999988833333
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc------------------------
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------------ 595 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g------------------------ 595 (655)
++++.++||++.|+...|.+||..+++++.||+|+||+..+++|+.+|+.
T Consensus 339 ------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 339 ------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred ------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 67788899999999999999999999999999999999988777666542
Q ss_pred -----------------------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 596 -----------------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 596 -----------------------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
..+...+.+++|.|.++...+.|+.++.+.+.+|+.-+++..|...+
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 11233455678999999999999999999999999888887776544
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=139.93 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=117.2
Q ss_pred ceeccCCCCceEEEEecCCCC--c------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--S------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--~------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.+....-.+..+..|+..... . ..+....+...+.|+..|+..|+|.+|+..++-
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----------- 481 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----------- 481 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-----------
Confidence 344444456677777765521 1 222233556777888888888889888776651
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------------------------------- 587 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~------------------------------- 587 (655)
....+..-..|.++|+.++...-++++++++.||.+++||....
T Consensus 482 -----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 482 -----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred -----eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 11112223578999999999888889999999999999976432
Q ss_pred ----------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 ----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ----------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.++.|.||.+.|++++|||||++|+|++.|++||+||+-++.++-.+... ..+.++.|+|+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd------~~~~sls~SPn 628 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD------SPCTSLSFSPN 628 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC------CcceeeEECCC
Confidence 344567789999999999999999999999999999999999988655433 33446888885
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=141.09 Aligned_cols=137 Identities=19% Similarity=0.327 Sum_probs=101.9
Q ss_pred ceeccCCCCceEEEEecCC---CC---ccc--ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDG---MG---SLT--SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---~~---~la--sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+.+++.+.++..|.-+. .+ ++. .....+...+.+++.||.|-.|++....|.
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------------------ 128 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------------------ 128 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------------------
Confidence 3566667777777776543 11 112 222355666779999999999999966555
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----------------------------
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----------------------------- 595 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g----------------------------- 595 (655)
..++.+++|.++|.+|.|+|.+.+||+.+.||+|+|||+.++.+..++.+
T Consensus 129 -s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 129 -SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred -chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 35677899999999999999999999999999999999876544333321
Q ss_pred -----------------------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 596 -----------------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 596 -----------------------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|...++++.|+|+|.|||+++.||.|.|||+++
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 334477888888888888888888888888875
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.32 E-value=2.1e-11 Score=130.70 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=135.9
Q ss_pred CCCCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.+++..+++++..+..+.+|+.+.... -.+....|.....-+.++|.|.+|++|....-.
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 356778999999999999999987221 233344566666778899999999999654432
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl 593 (655)
.++|+..++|++.+. .--++.+|.+.|-||+|-.+ ..|+|||.||.|.+|++.+.+++.+.
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ee----sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEE----SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eeechhcccceEEeccccceeEEEecccc----ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 457888899988443 22356788899999999854 46899999999999999988887766
Q ss_pred c-cc-----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 594 E-EH-----------TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 594 ~-gH-----------~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. +| ...|++|+..|...+++|||.||.||||-+..+-.- +..-..+.....|++++|+++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLYSLSLVGFVNSLAFSNS 436 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceeeecccccEEEEEEEccC
Confidence 4 33 238999999999999999999999999999876321 222222234556778888764
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.5e-11 Score=126.59 Aligned_cols=129 Identities=25% Similarity=0.384 Sum_probs=102.3
Q ss_pred ecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC
Q 006229 488 GSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG 567 (655)
Q Consensus 488 s~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG 567 (655)
...|+..+++...-+.+. .-++++|+|.+..+|++..+ ..+..+.||....+.|+-+|..
T Consensus 267 ~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtg-------------------e~v~~LtGHd~ELtHcstHptQ 326 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETG-------------------EVVNILTGHDSELTHCSTHPTQ 326 (481)
T ss_pred eeeccccceEehhhhcCc-ceeeeeeccccceeeeeccC-------------------ceeccccCcchhccccccCCcc
Confidence 344443444444333333 56778999999999966555 6788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec
Q 006229 568 KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK-LTFICC 637 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~-v~~l~~ 637 (655)
+++++.+.|.+.|+||++. -..+..|.||++.|+++.|.-+ ..++|||.|.+|||||+++... +.++..
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec
Confidence 9999999999999999974 3567889999999999999864 6799999999999999997643 445543
No 112
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.32 E-value=3.1e-11 Score=126.42 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=116.9
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
|-+++.|.......++++ +.++..++++|+.|....+|...++ .....+.+|++.|+|
T Consensus 54 DdS~~tF~~H~~svFavs---l~P~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVS---LHPNNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCCceEEEE---eCCCCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEE
Confidence 334444444333333333 3556789999999999999976665 355677899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+.||.||.+||||+.+|.|+||.+.++....++.+--..|--++|+|.+..|+.|+.||.|-+|.+.+......+.+|..
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999999999999888887778889999999999999999999999999999877788888776
Q ss_pred eeeee
Q 006229 641 IFVST 645 (655)
Q Consensus 641 ~v~s~ 645 (655)
.+.+.
T Consensus 192 ~ct~G 196 (399)
T KOG0296|consen 192 PCTCG 196 (399)
T ss_pred Ccccc
Confidence 55443
No 113
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.31 E-value=5.3e-11 Score=124.71 Aligned_cols=146 Identities=17% Similarity=0.242 Sum_probs=118.1
Q ss_pred CceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.++.++++-|-..++|...... +=.++...|...+.+|++|..++.|++|....+
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg----------------- 138 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG----------------- 138 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-----------------
Confidence 3566777777777788765421 112233355666789999999999999965554
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.+...+...-+.|.-+.|||.+.+|+.|+.||.|..|.+.+......+.||...|++-+|.|+|++++++..||+|++
T Consensus 139 --~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 139 --GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred --ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 233333344567888999999999999999999999999998888899999999999999999999999999999999
Q ss_pred EECCCCeEEEEEe
Q 006229 624 WDTENVRKLTFIC 636 (655)
Q Consensus 624 WDl~tg~~v~~l~ 636 (655)
||..++..++.+.
T Consensus 217 Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 217 WNPKTGQPLHKIT 229 (399)
T ss_pred EecCCCceeEEec
Confidence 9999999888776
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=1.9e-11 Score=124.95 Aligned_cols=140 Identities=18% Similarity=0.298 Sum_probs=108.3
Q ss_pred ceeccCCCCceEEEEecCCCCccccc-------CcccCCC---CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA-------PNQLTDM---DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass-------s~~l~~~---~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....+++.|+++.+|+.........- +..+.++ ..+|++|..|-.|++++...+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------------- 178 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------------- 178 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------
Confidence 56778889999999999763221110 1112222 257888888889999976666
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-eEEEEe--------------cccCCCEEEEEEc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF-TVKSTL--------------EEHTQWITDVRFS 606 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~-~~l~tl--------------~gH~~~ItsVafs 606 (655)
..-.++.||.+.|.+|.|+|... .|+||+.|+.||+||++.. -|..++ ..|.+.|+.++|+
T Consensus 179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 45678899999999999999666 7899999999999999753 333333 2577889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 607 PSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 607 Pdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
.++.++++++.|..+++|+..+|+.
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccchhhhhccCccceEEeecccCcc
Confidence 9999999999999999999987753
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4e-11 Score=123.77 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=104.0
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC--CCcE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH--DKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~--DgtV 579 (655)
+.+.+.++++++.|+++++|++.++ +.++++..++-.|-.++|-.....++.++. |.+|
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 4444557888899999999988777 567777777788889999887776666665 9999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
|+.++.+.+.++.|.||...|++|+.+|-+..++|+|.|++||+||+|..+|...+......+
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI 145 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999988887776555544
No 116
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.29 E-value=6.1e-12 Score=130.22 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=83.2
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCCEEEEEEcC
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSP 607 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl---~gH~~~ItsVafsP 607 (655)
.++++.++.++ .+...+.+|...|+.|.|+|+ ..+|++||.|.+||+||+.+..|+..| .||.+.|.+|.|++
T Consensus 115 GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 115 GVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred eEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 34444444443 577888999999999999995 569999999999999999999999887 58999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe
Q 006229 608 SLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 608 dg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
+|.+|+||+.|.+|++|++...+
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CCCeeeccCCcceEEEEecChhH
Confidence 99999999999999999998543
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.3e-10 Score=120.12 Aligned_cols=157 Identities=22% Similarity=0.216 Sum_probs=112.4
Q ss_pred CCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------CCCC---------ccc
Q 006229 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------DPRD---------RVG 534 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------d~~d---------~~~ 534 (655)
-..+++.-|.-... .+.+..+.+.++.+.++|.|++|++|+....+ |... ..+
T Consensus 88 ~dNkylRYF~GH~~---~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKK---RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCc---eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE
Confidence 34555555554333 23344556677778888888888888776443 1110 122
Q ss_pred cccccCCC--ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCE---EEEEEcCCC
Q 006229 535 RSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---TDVRFSPSL 609 (655)
Q Consensus 535 ~l~d~~~~--~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~I---tsVafsPdg 609 (655)
++.|+... ..+..+..-..-...++.+.|||||++|+.+...+.+.+.|.-+|..+.++.+|...- .+.+|+||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 33333321 1111111111345678999999999999999999999999999999999999887654 578899999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.++++|+.||+|.+|+++++..+..+.+.
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 99999999999999999999999998874
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.28 E-value=2.6e-11 Score=135.15 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=123.4
Q ss_pred ceeccCCCCceEEEEecCCCCcc-----------cccCcccCCCCc-EEEeccCCCcEEEEecCCCC-------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL-----------TSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l-----------asss~~l~~~~~-~LasGS~D~tV~vW~s~d~~------------- 527 (655)
..+.+++++++..+|...++.-+ +.....+...++ .+.+|+.|.+|.+|......
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee
Confidence 35677888999999999663221 112133333333 37889999999998443322
Q ss_pred ------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 528 ------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
...|.+.++|.... ++..+.+|...|.++.+-|+. .++|||.|++||+|.- ++++++|.|
T Consensus 106 ~ls~~~~~~~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g 177 (745)
T KOG0301|consen 106 SLSIGEDGTLISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG 177 (745)
T ss_pred eeecCCcCceEecccccceEEecchh-----hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence 11233334443332 345588999999999999988 8899999999999985 789999999
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 596 H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
|++.|+.|++-++ ..++||+.||.||+||+ +|+|+..+.+|...+.+..
T Consensus 178 HtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 178 HTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred chhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 9999999999875 57899999999999999 7999999999988776554
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.28 E-value=6.8e-12 Score=135.27 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=94.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+...++.|.+|+.-.+|.+|+..... .+....+....-.+.+++.+||.+++++++.||.|+
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~ 534 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIA 534 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEE
Confidence 445566777777777777777554431 122223333445678899999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|||++.-..++.|.||++.+.||.+++||..|-||+-|.+||.||+++++.+.
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999887654
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=1e-11 Score=132.54 Aligned_cols=122 Identities=22% Similarity=0.283 Sum_probs=92.7
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce------eeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCC
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT------FTEFQLIPASTSKVESCHFSPD-GKLLATGGHD 576 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t------~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~D 576 (655)
..+.|+|.|++|..|.+|+..- .+.+..+.-+..... .+.-..-.+|++.|.++.|+.. .+.|||||.|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI----~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDI----VDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CCcceEEEeccCceeEEecccc----ccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 3447999999999999994321 112221111111100 0111223479999999999884 4499999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg 629 (655)
+||++||+.++++..++..|...|.++.|+| ...+|++||.|++|+|.|.|..
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 9999999999999999999999999999999 4678999999999999999953
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.2e-11 Score=136.17 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=91.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
..+-++.+|+|+.+|+++|.||.|-.|+|-++.+.....++++|+..|.+|.|+|.+.+||+.+.||.|+|||+.++.+.
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEecccc--eee-eeceeeEEEecC
Q 006229 633 TFICCYKC--IFV-STAIGSCFFAPT 655 (655)
Q Consensus 633 ~~l~~~~~--~v~-s~~Vss~~F~P~ 655 (655)
.++..... .+. ...++..+|||+
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPK 199 (933)
T ss_pred hhcccCCccccccccceeeeeeecCC
Confidence 88765432 222 455778999995
No 122
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.4e-11 Score=121.04 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=96.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~Dgt 578 (655)
.++.+++.+++||.|.+|++|++.++ ..++.+-...+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34556678999999999999976444 235677788899999999999977 6889999999999
Q ss_pred EEEEeC---------CCCeEEEEecccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 579 AVLWCT---------ESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 579 VrIWDl---------~t~~~l~tl~gH~~~ItsVafsP--dg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|+||.- +......++..-...|++|+|.| -|-.||+++.||+||||++-+...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 999975 12345667778889999999999 47789999999999999887654443
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=1.9e-10 Score=118.23 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=121.8
Q ss_pred ceeccCCCCceEEEEecCCCCccccc----------CcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass----------s~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
.++..+|.|.++.+|.....+.++.. ...+.+.+..+++|+.|+.+++|+..++
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---------------- 104 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---------------- 104 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------
Confidence 56778899999999998775433321 1133555577888889999999966554
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEec--------------------------
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLE-------------------------- 594 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~--lLaSgs~DgtVrIWDl~t~~~l~tl~-------------------------- 594 (655)
-+..+..|.++|.+|+|-+... .|+|||+|++||+||++....+.++.
T Consensus 105 ----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 ----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred ----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 3456678999999999998665 89999999999999998643332221
Q ss_pred -----------ccC----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEeccccee----eeeceeeEEEe
Q 006229 595 -----------EHT----QWITDVRFSPSLSRLATSSADRTVRVWDTENV--RKLTFICCYKCIF----VSTAIGSCFFA 653 (655)
Q Consensus 595 -----------gH~----~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg--~~v~~l~~~~~~v----~s~~Vss~~F~ 653 (655)
.+. --+.||+...|....+.||-.|.|-|-.+..+ +.-.+|.||+... ..-+|++++||
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 122 23788999998888899999999999999876 6667899998522 23458899999
Q ss_pred c
Q 006229 654 P 654 (655)
Q Consensus 654 P 654 (655)
|
T Consensus 261 P 261 (347)
T KOG0647|consen 261 P 261 (347)
T ss_pred c
Confidence 8
No 124
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.6e-11 Score=132.73 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=100.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+..|++++.|+++++|+.... .......++.+-++++|.++|.|+++.+.+..+++|+.|++|+
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 56777788999999999999976331 1223445678899999999999999999999999999999999
Q ss_pred EEeCC------C----CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 581 LWCTE------S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 581 IWDl~------t----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
.|++. + .....++.||++.|+.+++++...+|++||.|||||+|+......
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 99543 1 134567889999999999999999999999999999999876554
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4e-11 Score=120.17 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=104.9
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~Dgt 578 (655)
.++-.+..|+++|.|++|++|...... ....+.++.||.++|..++|.. -|.+||++++||+
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 345555789999999999999554431 1357788999999999999976 8999999999999
Q ss_pred EEEEeCCCCe--EEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eE-EEEEecccceeeeeceeeEE
Q 006229 579 AVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENV--RK-LTFICCYKCIFVSTAIGSCF 651 (655)
Q Consensus 579 VrIWDl~t~~--~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg--~~-v~~l~~~~~~v~s~~Vss~~ 651 (655)
|.||....++ ....+..|...|++|+|.|. |-.||++|.||.|.|.+.++- -+ .....+|. .-|++++
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-----~GvnsVs 156 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-----IGVNSVS 156 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-----cccceee
Confidence 9999988774 44566789999999999995 568999999999999998753 22 23344443 3456788
Q ss_pred Eec
Q 006229 652 FAP 654 (655)
Q Consensus 652 F~P 654 (655)
|.|
T Consensus 157 wap 159 (299)
T KOG1332|consen 157 WAP 159 (299)
T ss_pred ecC
Confidence 887
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.24 E-value=1.9e-12 Score=136.98 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=104.3
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
....+++|+.|..|++|.....+ ...+.++.+..+.|++++|.++++.++++++|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k-----------------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEK-----------------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccch-----------------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 33578999999999999554431 2456778889999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
...+..++|.||++.|+++.|.-....+++|+.|.+||+||+....|.+++...+.
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 99999999999999999999998777799999999999999999999887655443
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=6.3e-11 Score=122.26 Aligned_cols=133 Identities=18% Similarity=0.243 Sum_probs=106.5
Q ss_pred EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 509 LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
++.|++...|--|...-..+ -.......++..+..+.+|.+.|+||+++ |.++||||.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~-------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK-------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc-------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 45677766665552221110 11112234556778889999999999996 9999999999999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+..+..|.+.|+++.|.+.-. .|+||+.||.|.+|++....++.++..|... |+.++.||+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~-----Vt~lsiHPS 138 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ-----VTDLSIHPS 138 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-----cceeEecCC
Confidence 9999999999999999999765 8999999999999999999999999998765 456777875
No 128
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=117.02 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=100.2
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
..++++|.+|+ |+.|+-|.+++.... ..+-++|+........ ...--.|+++-..|...-++.++.|+.+.-|
T Consensus 69 ~f~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 69 AFHDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred eeehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 34457788875 599999977665321 2333555544332111 0112458899999977777777799999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
|+++|+..++++||++.|.+|.-......|+||++||+|||||.++++++..+..-.
T Consensus 142 dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred EecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 999999999999999999999987778899999999999999999999999886543
No 129
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.23 E-value=1.7e-10 Score=123.12 Aligned_cols=131 Identities=17% Similarity=0.209 Sum_probs=105.2
Q ss_pred cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC
Q 006229 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 496 asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~ 575 (655)
..++..|++.+-++.+|..|+.|++|+.... ..+..|.+|+++|..|.|+-+|-||++++.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-------------------~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-------------------TNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCc-------------------cccccCCCCCCceeEEEeccCceEEEEEec
Confidence 3445577888888999999999999966554 467788999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEecccceeeee
Q 006229 576 DKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NVRKLTFICCYKCIFVST 645 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~--tg~~v~~l~~~~~~v~s~ 645 (655)
|+.|++||++..+...++.- ....|.+++|++.|.+|+.++.|=.|++++-. +..++..+..|.....++
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 99999999998887777752 33479999999999999999998888888743 456666665555433333
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=8.8e-11 Score=126.19 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=100.3
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+.+.||+.|..-+++.+|...+| ..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455678888878899999976665 4556678999999999999999999999999999999
Q ss_pred eCC---------CCeEEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 583 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 583 Dl~---------t~~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++. +-+.++.|.+|+-.|+++...+. ..+|+|+|.|.+|||||+..+..+.++.-..
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 762 45788999999999999998875 4689999999999999999998887765443
No 131
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.21 E-value=2.7e-11 Score=121.62 Aligned_cols=104 Identities=22% Similarity=0.297 Sum_probs=85.5
Q ss_pred CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCC
Q 006229 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 531 d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg 609 (655)
|...++|+.-++ .++..+ .|..-|.+|+|+.|.++|+||+.++.+||||+...+ ....+.+|++.|..+-|+...
T Consensus 80 dftakvw~a~tg---delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 80 DFTAKVWDAVTG---DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred cchhhhhhhhhh---hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 444455555544 333333 477789999999999999999999999999997543 566888999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
..|+|++.|++||+||.+++..+.++.-.
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEecC
Confidence 99999999999999999999999887543
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=119.04 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=95.1
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
..|...+.+||.|+.||.|.+|+.. ++..-+.+.+|..+|+|++||+||+.|+|+|.|-.|
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~-------------------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFD-------------------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEcc-------------------ccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 3455566799999999999999432 234556778999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEec---------ccCCC-------------------------------------EEEEEEcCCCCEEE
Q 006229 580 VLWCTESFTVKSTLE---------EHTQW-------------------------------------ITDVRFSPSLSRLA 613 (655)
Q Consensus 580 rIWDl~t~~~l~tl~---------gH~~~-------------------------------------ItsVafsPdg~~La 613 (655)
++||+..|.++..++ -|... -.+..|++.|++|+
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999998886655443 01100 11223667799999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 614 TSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+|...|.+.|+|..+.+|+..++-..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred EecCcceEEEEecchheeeeeeeech
Confidence 99999999999999999998876554
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=2.9e-10 Score=126.86 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=77.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
++++++.|..+++++++.|+.|||||+.+++.+++|+ +|++....|..+|.|.||||.+.|+++.++|..+++|+..
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 4455555677889999999999999999999999997 4778888999999999999999999999999999999999
Q ss_pred Eecccceeeee
Q 006229 635 ICCYKCIFVST 645 (655)
Q Consensus 635 l~~~~~~v~s~ 645 (655)
+.+|...+..+
T Consensus 679 m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 679 MTGHSEAVTGV 689 (1080)
T ss_pred hcCcchheeee
Confidence 99998876533
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.1e-10 Score=118.57 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=120.7
Q ss_pred CceeccCCCCceEEEEecCCCCccc-------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT-------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la-------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..++.+++.+..+++|+..|...-. ....++.+.++||+++++.-.|++|...-++++ +...
T Consensus 199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----------~fqe 267 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----------TFQE 267 (420)
T ss_pred ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----------chhh
Confidence 3678888999999999998732111 112266889999999999999999954333221 1112
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEe----cccCCCEEEEEEcCCCCEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------TVKSTL----EEHTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-------~~l~tl----~gH~~~ItsVafsPdg~~La 613 (655)
...+..++||.+.|..++||++...++|.+.||++||||++-. +.+++. ..-.+.-..+.++|+|..||
T Consensus 268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA 347 (420)
T KOG2096|consen 268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA 347 (420)
T ss_pred hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE
Confidence 2345678999999999999999999999999999999998531 222222 11222334799999999887
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 614 TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+. ..+++++..++|+..-++. .++..+|.++.|+|+
T Consensus 348 ~s~-gs~l~~~~se~g~~~~~~e----~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 348 VSF-GSDLKVFASEDGKDYPELE----DIHSTTISSISYSSD 384 (420)
T ss_pred eec-CCceEEEEcccCccchhHH----HhhcCceeeEEecCC
Confidence 654 4589999999887665443 235567788888875
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.15 E-value=1.1e-10 Score=125.33 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred ceeccCCCCceEEEEecCC-----CCccc-------ccCcccCCC-CcEEEeccCCCcEEEEecCCCC------------
Q 006229 473 TLQHNGASSKSLLMFGSDG-----MGSLT-------SAPNQLTDM-DRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg-----~~~la-------sss~~l~~~-~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
++.+++...+.+..|+.++ .+.+. ++...|.+. ...|.+.|.||+|++-+....-
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 4556666667777777742 11111 112222222 2457788899999875432221
Q ss_pred ----------CC------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEE
Q 006229 528 ----------DP------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK 590 (655)
Q Consensus 528 ----------d~------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l 590 (655)
+. ....+.+||..... .+...++-|..+|++|+++| ...+|||||.|++++|||++.....
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 00 01122334433321 22334556888999999999 5558999999999999999864322
Q ss_pred ----EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 591 ----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 591 ----~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
-....|...|.+++|||++-.|+|-|.|..|||||..
T Consensus 359 ~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 359 ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 2334699999999999998889999999999999984
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.15 E-value=7e-11 Score=123.71 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=73.9
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC---CCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~---~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..+..+.+|.++|.+|+|||.|.-|++||.|++||||.++.+....++ |+ ..|.||.|+-|..+|+|||.|+.||
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCccee
Confidence 356677899999999999999999999999999999999887655443 33 3599999999999999999999999
Q ss_pred EEECCCCeEEEE
Q 006229 623 VWDTENVRKLTF 634 (655)
Q Consensus 623 VWDl~tg~~v~~ 634 (655)
||.....+.+..
T Consensus 341 lWka~Aseklgv 352 (433)
T KOG0268|consen 341 LWKAKASEKLGV 352 (433)
T ss_pred eeecchhhhcCC
Confidence 998875554433
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=5.3e-10 Score=119.71 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=118.1
Q ss_pred CCCceeccCCCCceEEEEecCCCCc------cc---cc------------------Cccc---CCCCcEEEeccCCCcEE
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS------LT---SA------------------PNQL---TDMDRFVDDGSLDDNVE 519 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~------la---ss------------------s~~l---~~~~~~LasGS~D~tV~ 519 (655)
..+++.+.+..+..+.+|+++-... +. +. ...+ ......|++||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3456778888888999998874110 00 00 0001 22225689999999999
Q ss_pred EEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 520 vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
+|+...+ ++..++..|...|.++.|+| ...+|++|+.|++|++.|++........-.-.+
T Consensus 270 lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g 330 (463)
T KOG0270|consen 270 LWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG 330 (463)
T ss_pred EEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc
Confidence 9977665 57778888999999999999 677999999999999999985322222222567
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeece
Q 006229 599 WITDVRFSPSLS-RLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAI 647 (655)
Q Consensus 599 ~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~V 647 (655)
.|-.|+|.|... .++++..||+|+-+|+|+. +++.++..|...+.+.++
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV 381 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence 899999999765 5667778999999999975 899999999886655543
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.14 E-value=1.5e-10 Score=129.15 Aligned_cols=107 Identities=26% Similarity=0.455 Sum_probs=85.9
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+..+..+.+|.-.|+.++|||||++|++.|.|+++.+|..... ......+.|+..|+++.|+|++.++||+|.|++
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 4566788999999999999999999999999999999976322 123346789999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENV--RKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg--~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|+||...+. +++..+ ...-+..+|+.++|+|
T Consensus 642 VkVW~~~~~~d~~i~~~---a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRF---ACLKFSLAVTAVAYLP 674 (764)
T ss_pred EEEEeccCchhhhhhhh---chhccCCceeeEEeec
Confidence 999999877 555443 2233445566666665
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.13 E-value=3.3e-10 Score=122.45 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=118.6
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-----cc-----ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-----LT-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-----la-----sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.++...+.+++...++-+|+....+. +. .-..++.+...+..+++.|++|.+|+.++.
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------------ 541 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------------ 541 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------------
Confidence 45566666777788888998876321 11 112245666678888889999999977665
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----------------------------- 589 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~----------------------------- 589 (655)
..|+.|+||++.+.||++++||..|.||+-|.+||.||+++++.
T Consensus 542 -------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 542 -------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred -------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence 57899999999999999999999999999999999999875421
Q ss_pred -----------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 590 -----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 590 -----------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
...+.-|+.-|.+|.|.+.|++++|.+.|..+..|..--|..+......
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~ 674 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 674 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc
Confidence 1223347888999999999999999999999999988877776555443
No 140
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.7e-10 Score=118.37 Aligned_cols=129 Identities=21% Similarity=0.276 Sum_probs=101.8
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
...+..+++|..|+++|+|.+++. ..+..+..|...|.+++|+|||++|++-+.| ..+||
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 334458899999999999976654 3445556788999999999999999999999 99999
Q ss_pred eCCCCeEEEEec-----------------------------------------cc-------------CCCEEEEEEcCC
Q 006229 583 CTESFTVKSTLE-----------------------------------------EH-------------TQWITDVRFSPS 608 (655)
Q Consensus 583 Dl~t~~~l~tl~-----------------------------------------gH-------------~~~ItsVafsPd 608 (655)
+++++.++.... .| ...|++++.+++
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 998761111000 01 236899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 609 LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 609 g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++|.|+.||.|-|+++.+.+++..+..- +...|..+.|+|+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~a----H~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEA----HLGFVTGLTFSPD 335 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehhh----heeeeeeEEEcCC
Confidence 999999999999999999998888766432 4456789999996
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.7e-10 Score=116.36 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=88.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..|..+|||+++++++.... ..+..-.|..+|.+|+|.+ ...+++|+.|+.||++|+.+
T Consensus 26 ~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 46667779999999954332 2222335889999999986 56789999999999999998
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+... .+-.|...|.||.+++....++|||.|++|++||.++..++.++...
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC
Confidence 8766 45569999999999998899999999999999999965555444433
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.09 E-value=3.1e-09 Score=108.90 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=85.7
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~ 585 (655)
+.+++++.|+.|++|+..++ +.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 46788889999999965433 2344455443 46789999999966 667789999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEec
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSg-S~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+++.+..+..|.. +..++|+|+++.++++ +.|+.|++||+++++++..+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 9988887765544 5678999999977654 5689999999999888877754
No 143
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.3e-10 Score=122.86 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=110.2
Q ss_pred ceeccCCCCceEEEEecCCCCccc---------ccCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLT---------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~la---------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+.+++.+..++.++..-...++ +....+.....++|+|+.|..|.+|+..+..
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 344555555566555554321111 1112334455678888888888888663322
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEE
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~t 592 (655)
...|+++++|++..+.....+ ...+-|++|.|++..+-|+++. .+..|.||++.+.+.+..
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 455777788888766444333 2246799999999887666643 466899999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+.||+..|.+++++|||..|+||+.|.++|+|++-+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999764
No 144
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.08 E-value=3.7e-09 Score=105.30 Aligned_cols=116 Identities=26% Similarity=0.346 Sum_probs=89.0
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcE-EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~-LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
+...+.|+|++. +| +..|..+..|.+|+.. ...+..+. ...+.
T Consensus 61 ~I~~~~WsP~g~--------------~favi~g~~~~~v~lyd~~--------------------~~~i~~~~--~~~~n 104 (194)
T PF08662_consen 61 PIHDVAWSPNGN--------------EFAVIYGSMPAKVTLYDVK--------------------GKKIFSFG--TQPRN 104 (194)
T ss_pred ceEEEEECcCCC--------------EEEEEEccCCcccEEEcCc--------------------ccEeEeec--CCCce
Confidence 467888999876 44 4456677889999442 13344443 45678
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCe
Q 006229 560 SCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENVR 630 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~------DgtVrVWDl~tg~ 630 (655)
.|.|||+|++|++|+.+ |.|.|||+++.+.+.+++ |. .+++++|+|||++|+|++. |..++||+.. |+
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-Ce
Confidence 99999999999998854 569999999999987775 43 4789999999999999875 7889999985 66
Q ss_pred EEEEE
Q 006229 631 KLTFI 635 (655)
Q Consensus 631 ~v~~l 635 (655)
.+...
T Consensus 182 ~l~~~ 186 (194)
T PF08662_consen 182 LLYKK 186 (194)
T ss_pred EeEec
Confidence 66543
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=8.2e-10 Score=129.14 Aligned_cols=174 Identities=13% Similarity=0.173 Sum_probs=123.8
Q ss_pred ceeccCCCCceEEEEecCCC---Cc-----------ccccCcccCCCC-cEEEeccCCCcEEEEecCCCC----------
Q 006229 473 TLQHNGASSKSLLMFGSDGM---GS-----------LTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~---~~-----------lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+++.+..|+.+..|+++.. .. -.+...+|.... .++++|+.|+.|.+|+.....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 46777788999999998761 00 011112333333 389999999999999766543
Q ss_pred -------------------CCCCccccccccCCCceeeeEEeecCCC--CCeeEEEEcCCCC-EEEEEeCCC---cEEEE
Q 006229 528 -------------------DPRDRVGRSAEVGKGFTFTEFQLIPAST--SKVESCHFSPDGK-LLATGGHDK---KAVLW 582 (655)
Q Consensus 528 -------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~--~~V~sl~fSpdG~-lLaSgs~Dg---tVrIW 582 (655)
.......-+||+... +.+-.+..|. ..|..|.|||+.. .|++++.|. .|.+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCC---CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence 111223356666654 3333333343 3478999999765 677776653 69999
Q ss_pred eCCC-CeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 583 CTES-FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 583 Dl~t-~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|++- ...++++++|...|.+|.|++.+ ++|+|++.|+.|.+|+..+++.+..+......+. .+.|+|
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f-----dv~w~p 306 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCF-----DVQWCP 306 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCccee-----eeeecC
Confidence 9873 45778889999999999999966 8999999999999999999999998877655543 566666
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.05 E-value=6.2e-09 Score=106.67 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 006229 558 VESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 558 V~sl~fSpdG~lLaS-gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l 635 (655)
...++|+|+++++++ .+.++.|.+||+++++.+..+. +...+++++|+|+|.+|++++ .+++|+|||+++++++..+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 346889999997554 4556789999999988876653 456899999999999998864 6999999999999999988
Q ss_pred ecccceeeeeceeeEEEec
Q 006229 636 CCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 636 ~~~~~~v~s~~Vss~~F~P 654 (655)
..+..+ ..++|+|
T Consensus 288 ~~~~~~------~~~~~~~ 300 (300)
T TIGR03866 288 KVGRLP------WGVVVRP 300 (300)
T ss_pred Eccccc------ceeEeCC
Confidence 765332 4566665
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=3.8e-09 Score=109.04 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=103.3
Q ss_pred ceeccCCCCceEEEEecCCC-------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 473 TLQHNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~-------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
..+..++.|+++..|+.... .........|.+ +..+++|+.|+.|+.++...+
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~------------------- 85 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG------------------- 85 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-------------------
Confidence 45566678999999988762 122233334555 356789999999999976655
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
....+-.|..+|.||.+++....+++||+|++|++||.+......++. -...|.|+... +..|+.|+.|..|.+||
T Consensus 86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYD 161 (323)
T ss_pred -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEE
Confidence 234456799999999999988899999999999999999755665655 33488888765 78999999999999999
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+++...
T Consensus 162 LRn~~~ 167 (323)
T KOG1036|consen 162 LRNLDE 167 (323)
T ss_pred cccccc
Confidence 997543
No 148
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.04 E-value=1.7e-09 Score=110.85 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=87.0
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~ 585 (655)
++|.+.|.|.++.+|+...+ ........+-+|...|..|+|..++. .||+.|.||.||+||++
T Consensus 164 ~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 67889999999999965543 12234456678999999999998665 89999999999999986
Q ss_pred CC------------------------------------------------eEEEEecccCCCEEEEEEcCC-CCEEEEEe
Q 006229 586 SF------------------------------------------------TVKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (655)
Q Consensus 586 t~------------------------------------------------~~l~tl~gH~~~ItsVafsPd-g~~LaSgS 616 (655)
.. ..+..|++|...|+.|+|.|. ...|.||+
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 31 234567789999999999995 56899999
Q ss_pred CCCcEEEEECCCC
Q 006229 617 ADRTVRVWDTENV 629 (655)
Q Consensus 617 ~DgtVrVWDl~tg 629 (655)
.|..+.|||+...
T Consensus 308 DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 308 DDCQALIWDLQQM 320 (364)
T ss_pred CcceEEEEecccc
Confidence 9999999999753
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.02 E-value=1.2e-09 Score=115.88 Aligned_cols=153 Identities=14% Similarity=0.217 Sum_probs=118.4
Q ss_pred eeccCCCCceEEEEecCC-----------------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 474 LQHNGASSKSLLMFGSDG-----------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg-----------------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
.+.+++.|+.+++|.... .+.-++...++.+.+..+++|+.++.|-+|-..+..+..... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~--e 105 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT--E 105 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc--h
Confidence 556666777777775532 112344455778888899999999999999655422110000 0
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.+. ....+...+.+.+|...|..++|+||+.++++++.|.++++||+..|..+..+.+|...|.-|+|.|.+.++++-|
T Consensus 106 ~~~-~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 106 ADL-NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhh-CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 011 1233567788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCC
Q 006229 617 ADRTVRVWDTENV 629 (655)
Q Consensus 617 ~DgtVrVWDl~tg 629 (655)
.|...+++++...
T Consensus 185 ~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 185 SDRHPEGFSAKLK 197 (434)
T ss_pred cCcccceeeeeee
Confidence 9998888877643
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=112.26 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=85.9
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+...+|.++|.|..|.+|... + ..+..+......-+.+++||+|++|++++.---|+||
T Consensus 196 A~~~k~imsas~dt~i~lw~lk-G-------------------q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK-G-------------------QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC-C-------------------ceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence 5666899999999999999433 1 2334444444556688999999999999999999999
Q ss_pred eC---CCC-----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 583 CT---ESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 583 Dl---~t~-----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+ +.| ..+..|+||...|+.++|+++.++++|.|.||++||||++
T Consensus 256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 86 233 3456789999999999999999999999999999999986
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=111.79 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=63.2
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 006229 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~ 627 (655)
+..+-|.|++||| +.+.++.|+.-.++-|+.-..++++..+-||.+.||.++|+++|+.|++|+. |-.|.+||+|
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 3367789999999 7779999999999999999999999999999999999999888777776664 5566667666
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.1e-10 Score=131.57 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=113.3
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
.-..+.|+..+.+. + -+|+.|..||+|.+|+...- ........+.++..|++.|..
T Consensus 66 rF~kL~W~~~g~~~----------~-GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~g 121 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHS----------H-GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVLG 121 (1049)
T ss_pred cceeeeecccCCCc----------c-ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCceee
Confidence 44667788866522 1 46889999999999954331 112233567788899999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 561 CHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 561 l~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
++|++... +||+|+.||.|.|||+...+.-.++. .-.+.|.||+|... ...|+|++.+|++-|||+|..+.+..+.
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence 99999555 99999999999999998755444442 24678999999874 4568999999999999999888887777
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
.+... ..++.+.|||+
T Consensus 202 ~~~~~---~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 202 DTPGR---MHCSVLAWHPD 217 (1049)
T ss_pred cCCCc---cceeeeeeCCC
Confidence 66554 55779999996
No 153
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.99 E-value=1.8e-10 Score=130.40 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=92.5
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrI 581 (655)
++..+++|.+|+.|.-|++|-..+. .+...++||.+.|+.++.+....++++++.|+.|++
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred eccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 4445579999999999999953333 678888999999999999998889999999999999
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.+.++.++..+.||++.|++|+|+|-- +.+.||++++||.+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999999999999999999954 78899999999998
No 154
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.99 E-value=1.7e-08 Score=100.55 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 006229 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENV 629 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~tg 629 (655)
.+.|.+++|+|+|+.||+. ..++.|.|||++ ++.+.++. ...++.|+|+|+|++|++|+.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3569999999999976554 467899999997 66666664 5678999999999999999865 56999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++..+.... +..+.|+||
T Consensus 136 ~~i~~~~~~~-------~t~~~WsPd 154 (194)
T PF08662_consen 136 KKISTFEHSD-------ATDVEWSPD 154 (194)
T ss_pred EEeeccccCc-------EEEEEEcCC
Confidence 8887765332 357899996
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.99 E-value=4.8e-09 Score=113.57 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=99.3
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|.+++++|.|.+|++..-. ..+.-...|+.+...|||+| +..+|++.|.|++|.+||+.
T Consensus 178 ~lL~~asd~G~VtlwDv~g~s------------------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMS------------------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eeeEeeccCCeEEEEeccCCC------------------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 346788999999999765441 12333467999999999999 67799999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecccceeeeeceeeEEEec
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..+...++. .+.+.++|+|.++|.+|+.|+..|.|..||+|. ...+.++..|... |.+++|-|
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s-----Vt~vafq~ 303 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS-----VTRVAFQP 303 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc-----eeEEEeee
Confidence 777666665 566889999999999999999999999999985 4556667666654 55667765
No 156
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.97 E-value=2.9e-09 Score=111.81 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=105.7
Q ss_pred ceeccCCCCceEEEEecCCCCccccc--------CcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA--------PNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass--------s~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
..+.+++.|+.+++|+.......... ...+.. ..+.+++.|++|+.|-.....
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 56778889999999999762111110 111122 445677799999999522211
Q ss_pred --CCCCcc---ccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEE-----------
Q 006229 528 --DPRDRV---GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK----------- 590 (655)
Q Consensus 528 --d~~d~~---~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l----------- 590 (655)
.....+ +.+||.... .++..+.--.+.|.||.|+| .-.+|++|+.|+.|.|||+++..++
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~ 234 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNT 234 (433)
T ss_pred ccccccccCceeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccc
Confidence 000111 234544433 34555555567799999999 4558888989999999998765332
Q ss_pred -------------------------------EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 591 -------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 591 -------------------------------~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
....+|.+.|.+|+|+|.|.-++|||.|++||||.++.+..
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 23456889999999999999999999999999999986643
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.96 E-value=3.2e-09 Score=114.18 Aligned_cols=133 Identities=22% Similarity=0.275 Sum_probs=93.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++|..-|.|-+|+.... ......+..+..|..+|.++.|+| +-..+++.|+||+||+-|++
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred eEEEEccCCCcEEEEecCCC---------------CCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 57899999999999966311 111133555678999999999999 66689999999999998765
Q ss_pred CC---------------------------------------------eEEEEecccCCCEEEEEEcCCCC-EEEEEeCCC
Q 006229 586 SF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADR 619 (655)
Q Consensus 586 t~---------------------------------------------~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~Dg 619 (655)
.. .....++-|+..|++|+++|-.. +|||||.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 31 01112233788999999999664 699999999
Q ss_pred cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++|||+|....-.. .--...-+...|.++.|+|+
T Consensus 346 T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred ceeeeehhhhcCCCC-cceecccccceeeeeEEcCC
Confidence 999999985322211 00112223445778899985
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=2.4e-09 Score=108.52 Aligned_cols=71 Identities=28% Similarity=0.520 Sum_probs=68.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
-.|..+..-||++.|||+|+|+.||||..+++..+..++-|++.|++|+|+|+...+|.+|.|++|.+|++
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 45888899999999999999999999999999999999999999999999999999999999999999986
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.95 E-value=1.2e-09 Score=115.58 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=81.4
Q ss_pred EeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCCEEEEEEcCC-CCEEEEEeCCC
Q 006229 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADR 619 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-------~~l~tl~gH~~~ItsVafsPd-g~~LaSgS~Dg 619 (655)
-.+.||++.|..++|+| +...|||||+|.+|.||.+... +.+..|.||...|..|.|+|. .+.|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999999 7779999999999999998532 567789999999999999995 46899999999
Q ss_pred cEEEEECCCCeEEEEEecccceee
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
+|.|||+.+|+.+.++. |...+.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~ 177 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVY 177 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEE
Confidence 99999999999998887 544443
No 160
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.94 E-value=1.6e-10 Score=130.83 Aligned_cols=104 Identities=20% Similarity=0.359 Sum_probs=96.0
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.++.+.+|..+|+|+.|...|+++++|+.|..|+||.++++.|+.++.||++.|++++.+.+..+++++|.|..|+||.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+.++..+..+.+|...+ .+++|+|
T Consensus 261 l~~~~pvsvLrghtgav-----taiafsP 284 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAV-----TAIAFSP 284 (1113)
T ss_pred cCCCchHHHHhccccce-----eeeccCc
Confidence 99999999999887654 4666666
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.93 E-value=2.4e-08 Score=102.87 Aligned_cols=96 Identities=32% Similarity=0.455 Sum_probs=84.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrV 623 (655)
..+..+..|...|.+++|+|+++++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. .+++++.|++|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 566778899999999999999999999886 99999999999999999999999999999999998 6666699999999
Q ss_pred EECCCCeEEE-EEecccce
Q 006229 624 WDTENVRKLT-FICCYKCI 641 (655)
Q Consensus 624 WDl~tg~~v~-~l~~~~~~ 641 (655)
||...+.++. .+.+|...
T Consensus 226 wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred EECCCCcEEeeecCCCCcc
Confidence 9999888887 56666554
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.93 E-value=6.1e-09 Score=115.66 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=84.4
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrI 581 (655)
.+.+..|++.+-|.++++|++..+. ..-.+.+.+|.+.|.++||.+ |...|++|+.|+.|.|
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~-----------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSR-----------------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccce-----------------eecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 4445668888889999999765551 112234789999999999999 5669999999999999
Q ss_pred EeCCCC---------------------------eEEEEecccCCCEEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCe
Q 006229 582 WCTESF---------------------------TVKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 582 WDl~t~---------------------------~~l~tl~gH~~~Its---VafsPdg~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
||++-. +.++...+|...|.+ |.+.-|...|||+|. |++|||||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 998521 112334456666666 666778899999998 9999999999654
Q ss_pred E
Q 006229 631 K 631 (655)
Q Consensus 631 ~ 631 (655)
+
T Consensus 252 ~ 252 (720)
T KOG0321|consen 252 T 252 (720)
T ss_pred c
Confidence 4
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.91 E-value=7.6e-08 Score=99.20 Aligned_cols=151 Identities=25% Similarity=0.359 Sum_probs=108.6
Q ss_pred CCCceEEEEecCC-CCc--------ccccCcccCCCCcEEEeccC-CCcEEEEecCCCCCCCCccccccccCCCceeeeE
Q 006229 479 ASSKSLLMFGSDG-MGS--------LTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 479 S~d~s~l~ws~dg-~~~--------lasss~~l~~~~~~LasGS~-D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v 548 (655)
..++.+.+|+... ... -.+....+.+.+.+++.++. |+.+++|....+ ..+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 191 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------------------KPL 191 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-------------------ceE
Confidence 3366777777764 111 01112234455556666664 888888854432 456
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..+.+|...|.+++|+|++. ++++++.|++|++||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++||+
T Consensus 192 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 66777999999999999998 66666999999999999888888 789999986 5589999999999999999999999
Q ss_pred CCCeE-EEEEecccceeeeeceeeEEEec
Q 006229 627 ENVRK-LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 627 ~tg~~-v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+.... +..+..| ...+.++.|+|
T Consensus 271 ~~~~~~~~~~~~~-----~~~v~~~~~~~ 294 (466)
T COG2319 271 RSSSSLLRTLSGH-----SSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEEecC-----CccEEEEEECC
Confidence 97665 4444333 33455567766
No 164
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.91 E-value=3e-09 Score=116.20 Aligned_cols=110 Identities=22% Similarity=0.400 Sum_probs=89.7
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+++||+.|.|+.+|+|+.... ..+...+.--+...||+|||||++|++|++|--|.
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~-------------------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQ-------------------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHH-------------------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEE
Confidence 34455679999999999999954332 22333444557899999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcC-----------------------------------CC-------------CEE
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSP-----------------------------------SL-------------SRL 612 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsP-----------------------------------dg-------------~~L 612 (655)
||.+...+.+..-.||+..|+.|+|+| ++ -+|
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRf 437 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRF 437 (636)
T ss_pred EEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEe
Confidence 999999999999999999999999983 01 147
Q ss_pred EEEeCCCcEEEEECCCC
Q 006229 613 ATSSADRTVRVWDTENV 629 (655)
Q Consensus 613 aSgS~DgtVrVWDl~tg 629 (655)
.|.+.|..+.|||+..-
T Consensus 438 GSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 438 GSVGQDTQLCLWDLTED 454 (636)
T ss_pred ecccccceEEEEecchh
Confidence 78889999999999753
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.91 E-value=6.2e-09 Score=116.48 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=97.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+++...++++++-|++|++|+...++ ..+.++.-++|.+....|...|.|.||++.+.|+++.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgK----------------q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGK----------------QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccc----------------eeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 556777899999999999999665552 2233344456778888999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|+|.-+++|+..+.||...|+.|.|.+|.+.|+|++.||.|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999999999999998863
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.89 E-value=6.8e-09 Score=106.36 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=76.5
Q ss_pred CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcC
Q 006229 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP 607 (655)
Q Consensus 530 ~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsP 607 (655)
.++....||..+...... +..+|...|..++|+|+. .+|+||+.|+.|||||++.. ..+.++.+|+..|++|+|+|
T Consensus 191 ~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 345556666664432222 234688889999999954 48999999999999999854 57889999999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCC
Q 006229 608 S-LSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 608 d-g~~LaSgS~DgtVrVWDl~t 628 (655)
. ..+|+|||.|..|.+|.+.+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccceEEEecCCCceeEEEeccc
Confidence 5 46789999999999997653
No 167
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.89 E-value=1.4e-08 Score=106.99 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-VrVWDl~tg 629 (655)
.+...+.++.+++.+.+||--+ .-|.|.|||+.+.+.+.++..|++.|-||+|+++|.+|||+|+.|| |||+++.+|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 3445566666666777887743 2488999999999999999999999999999999999999999998 899999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+..|+-+.. ++.|.+++|||+
T Consensus 207 ~kl~eFRRG~~---~~~IySL~Fs~d 229 (391)
T KOG2110|consen 207 QKLYEFRRGTY---PVSIYSLSFSPD 229 (391)
T ss_pred cEeeeeeCCce---eeEEEEEEECCC
Confidence 99999976544 667999999996
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=4.2e-08 Score=109.78 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=79.3
Q ss_pred cccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCCEEEEEEcCCCCEE
Q 006229 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRL 612 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l--~tl~gH~~~ItsVafsPdg~~L 612 (655)
..||+.+. +....+....+.|.+++.+|.+..++.||+||.+.+++...++.. +.|-..++.|.+|.|+|++..|
T Consensus 93 ~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 93 TEWDLHTL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEEecccC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 44444443 445556667789999999999999999999998878887776543 3455678999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEE
Q 006229 613 ATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 613 aSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++||.||.||+||+.++..++.+
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred EecccCceEEEEEcCCCceEEEe
Confidence 99999999999999998887743
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.86 E-value=4.8e-09 Score=114.41 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=82.1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------------C----------------
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------------------F---------------- 587 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----------------------~---------------- 587 (655)
+..+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.-.. .
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~ 174 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc
Confidence 45566789999999999999999999999999999995321 0
Q ss_pred --eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 --TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 --~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+-.+++|++.|.|+.|++....|+||++|...+|||.-... +. .+.++.-+|.+++|.|+
T Consensus 175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-Lf-----~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-LF-----TSAAEEYAITSVAFNPE 238 (737)
T ss_pred cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-cc-----cCChhccceeeeeeccc
Confidence 1123556899999999999999999999999999999986432 22 23334556778888875
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.86 E-value=5.7e-09 Score=115.44 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=92.6
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWD 583 (655)
++.+|++||.|..|++|..+.+-.. .+ . .....+-+-.-.|.|+.|+|... +|++++ .++|+|||
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q-----~L---S-----ape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g~v~i~D 156 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQ-----KL---S-----APEIDVGGGNVIVECLRFHPTADGILASGA-HGSVYITD 156 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCccc-----cc---C-----CcceeecCCceEEEEeecccCcCceEEecc-CceEEEEE
Confidence 3467899999999999965533110 00 0 01111222234578999999544 555554 58999999
Q ss_pred CCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecccce
Q 006229 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NVRKLTFICCYKCI 641 (655)
Q Consensus 584 l~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~-tg~~v~~l~~~~~~ 641 (655)
+.+.+.+..+.+|.+.|-+..|+.||.+|++++.|+.|+|||.+ .++.+....+|...
T Consensus 157 ~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 157 ISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred cccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc
Confidence 99999999999999999999999999999999999999999998 46667777777654
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.6e-08 Score=105.66 Aligned_cols=108 Identities=24% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeC----CCcE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGH----DKKA 579 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~----DgtV 579 (655)
..+.|.+|+.||+|++|+.+.-.. ..+..+..+. .+..|++....++++++|.. |-.|
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e-----------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v 145 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAE-----------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASV 145 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchh-----------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEE
Confidence 346788999999999996654310 1222334444 45677777777888888753 6789
Q ss_pred EEEeCCCCeE-EEEe-cccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 006229 580 VLWCTESFTV-KSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 580 rIWDl~t~~~-l~tl-~gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg 629 (655)
.+||++.... +..+ +.|.+.||+|+|+|. -..|+|||.||.|.|+|+...
T Consensus 146 ~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 146 VLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999997765 5554 589999999999995 578999999999999999743
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.84 E-value=3e-08 Score=101.86 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=71.6
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 006229 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~ 627 (655)
.+.+++++++|+. |-++|.+.|-|.|+.|||++++ .....|-+|...|.+|+|...+ ..+||+|.||.||++|+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 4567899999998 8889999999999999999986 3567788999999999999865 479999999999999999
Q ss_pred CCeEEEEE
Q 006229 628 NVRKLTFI 635 (655)
Q Consensus 628 tg~~v~~l 635 (655)
..+.-..+
T Consensus 228 ~leHSTII 235 (364)
T KOG0290|consen 228 SLEHSTII 235 (364)
T ss_pred ccccceEE
Confidence 87655444
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.9e-08 Score=110.61 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=118.2
Q ss_pred CCceeccCCCCceEEEEe------cCCCCc--------c----cccCcccCCCCcEEEeccCCCcEEEEecCCCCC--C-
Q 006229 471 RPTLQHNGASSKSLLMFG------SDGMGS--------L----TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--P- 529 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws------~dg~~~--------l----asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d--~- 529 (655)
......+++.|+++..|+ ++.... . ++....+.....+|.++|.|++|+.|....... .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccC
Confidence 345677888999999993 332110 0 111113345556789999999999996544321 0
Q ss_pred --C----Cccc----------------cccccCCCceeeeEEeecC-------CCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 530 --R----DRVG----------------RSAEVGKGFTFTEFQLIPA-------STSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 530 --~----d~~~----------------~l~d~~~~~t~~~v~~l~g-------H~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
. ...+ +...+.+......+..+.. ....+.-|.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 0 0000 0011111111111122221 123467889999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
++|..+++.++....|...|+++++.|+|-+|++++.|+.|++|.+....|+..+..|+.
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 999999999999999999999999999999999999999999999999999987776654
No 174
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=5e-09 Score=117.23 Aligned_cols=109 Identities=26% Similarity=0.370 Sum_probs=88.4
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg-----tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+.++..+.||...|+||+.+|+|+++||++... .|+||++.+...+..+.+|.-.|+.++|+|||++|+++|.|+
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 345667789999999999999999999998653 589999999988889999999999999999999999999999
Q ss_pred cEEEEECCCCeEE-EEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKL-TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v-~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.||........ ..|.+ ...+.-.|.+|.|+|+
T Consensus 595 t~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPD 629 (764)
T ss_pred eEEeeeeecccchhhhhcc--ccccceEEEEcccCcc
Confidence 9999987532211 11111 2334455779999986
No 175
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.81 E-value=2.3e-08 Score=108.39 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=116.6
Q ss_pred eccCCCCceEEEEecCCCCcccccCc-----------ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 475 QHNGASSKSLLMFGSDGMGSLTSAPN-----------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~lasss~-----------~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+.+.++.+.+|.-+|... .++.. ....-+.++.+|+..++|++|+....
T Consensus 50 vas~~gdk~~~~~~K~g~~~-~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------- 111 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTP-EVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------- 111 (673)
T ss_pred EeecCCceeEEEecccCCCC-ccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-----------------
Confidence 34455789999999988621 11111 11222377888989999999954321
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCCEEEEEEcCCCCE-EEEEeCCCcE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSR-LATSSADRTV 621 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH-~~~ItsVafsPdg~~-LaSgS~DgtV 621 (655)
.+.+.+++|.+.|+|+.++....+||+++..|-|.|..+.++....+|... ...|.-|+|+|..++ |.++|.||+|
T Consensus 112 --l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 112 --LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred --HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 467788999999999999999999999999999999999998887788633 456779999998765 7789999999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|||+.....+..+. .+++.....++|+|.
T Consensus 190 tlwDv~g~sp~~~~~----~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHAS----EAHSAPCRGICFSPS 219 (673)
T ss_pred EEEeccCCCcccchh----hhccCCcCcceecCC
Confidence 999998777664332 233444557778774
No 176
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.79 E-value=1.1e-08 Score=113.57 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=91.1
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
...+.|+.+-.|+.|.+++...- .++ .....+.....|...|..+.|.|....|++++.|.++|+||
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~------~fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSI------VFR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred CccceEEEecCCCceeeecchhh------hcc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 34478889989999999954322 111 01122455668999999999999666999999999999999
Q ss_pred CCCCeEEEE--ecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 584 TESFTVKST--LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~~~l~t--l~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
+.+.+++.. +.||+..|.++||.|.. ..|+||+.||.|.|||++-
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 999998877 89999999999999965 5789999999999999973
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.5e-08 Score=102.01 Aligned_cols=104 Identities=20% Similarity=0.323 Sum_probs=81.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEecccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----t~~~l~tl~gH~~~ItsVafsP--dg~~LaSgS~DgtVrVWD 625 (655)
.+|.+-|.|+.|...|+.+|||+.|.+|+|||.+ +..+...++.|.+.|..|.|.+ -|..+|++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4478889999999999999976 488999999999999997
Q ss_pred CC--CCeE--EEEEecccceeeeeceeeEEEecC
Q 006229 626 TE--NVRK--LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~--tg~~--v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
-. +.++ .+.+.+..-.-....|.++.|.|.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~ 123 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK 123 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecch
Confidence 62 2222 223333333334456778888883
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=8.2e-09 Score=112.91 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=75.3
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsP--dg~~LaSgS~DgtVrV 623 (655)
....+.||++-|+|+.|+.||.+|++||.|-.+.|||.-..+.++.+ .||+..|.|+.|-| +.+.++||+.|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34677899999999999999999999999999999999988888877 59999999999999 5678999999999999
Q ss_pred EECCC
Q 006229 624 WDTEN 628 (655)
Q Consensus 624 WDl~t 628 (655)
+|+..
T Consensus 122 fdl~~ 126 (758)
T KOG1310|consen 122 FDLDS 126 (758)
T ss_pred Eeccc
Confidence 99984
No 179
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=8.6e-08 Score=107.36 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=112.0
Q ss_pred ceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+.+.+.++.+.-|++.... .-++.+.++.+.+..++.||.||.+..+....+ .
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-----------------~ 143 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-----------------K 143 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-----------------e
Confidence 455555666777777775411 112334455677788888888884433322111 1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--------ccCCCEEEEEEcCCCCEEEEEe
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~--------gH~~~ItsVafsPdg~~LaSgS 616 (655)
..-.+.+..-++.|.||.|++++..|++|+.|+.||+||+.++..++... +-..-|++|.|-. ...|++|.
T Consensus 144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgD 222 (691)
T KOG2048|consen 144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGD 222 (691)
T ss_pred EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEec
Confidence 12223444457889999999999999999999999999999987766221 1334588888874 46899999
Q ss_pred CCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.-|+|++||...+..+..+.+|..-+.+.++.
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred CCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 99999999999999999999888777666553
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.76 E-value=7.2e-08 Score=101.77 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=76.2
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+...+..+..|.+.|-|++|+++|.+|||+|+.|+ |||+++.+|..+..|+.- ...|.+++|+|++.+|+..|.-+|
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 44677888899999999999999999999999887 799999999999999643 345899999999999999999999
Q ss_pred EEEEECCC
Q 006229 621 VRVWDTEN 628 (655)
Q Consensus 621 VrVWDl~t 628 (655)
|+|+.++.
T Consensus 242 VHiFKL~~ 249 (391)
T KOG2110|consen 242 VHIFKLEK 249 (391)
T ss_pred EEEEEecc
Confidence 99999875
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=2.7e-08 Score=108.92 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=93.5
Q ss_pred eEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeE-EeecCCCCCeeEE
Q 006229 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESC 561 (655)
Q Consensus 483 s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v-~~l~gH~~~V~sl 561 (655)
.++.|+.+|. +|++||.|-.+-+|+... .+.+ ..-.+|+..|.|+
T Consensus 54 N~LeWn~dG~---------------lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 54 NCLEWNADGE---------------LLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSV 99 (758)
T ss_pred cceeecCCCC---------------EEeecCCcceEEeecchh-------------------cceeeeeecccccceeEE
Confidence 5677777766 999999999999995432 2333 3446999999999
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEeCCC----------CeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 562 HFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 562 ~fSp--dG~lLaSgs~DgtVrIWDl~t----------~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
.|-| ..++++||..|+.|+|+|+.. .+.++.+.-|++.|..|+-.|++ ..+.++|+||+||-+|++.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999 556999999999999999974 23455667899999999999999 7899999999999999996
Q ss_pred C
Q 006229 629 V 629 (655)
Q Consensus 629 g 629 (655)
.
T Consensus 180 p 180 (758)
T KOG1310|consen 180 P 180 (758)
T ss_pred C
Confidence 4
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.1e-08 Score=109.12 Aligned_cols=77 Identities=31% Similarity=0.405 Sum_probs=72.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
.+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+|||++|+|-+.| ..+|||++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 689999999999999999999999998888888888999999999999999999999999 99999999997776665
No 183
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.72 E-value=6.9e-08 Score=112.44 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=93.0
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
....-++++|+.-+.|-+|....++ ..+ .+.+|.+.|.++.|+.||+++++.|+|.++|+|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW 202 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence 3444678888888888899555221 111 578999999999999999999999999999999
Q ss_pred eCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 583 CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 583 Dl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++++.+... +.-||+..|+.++|.|+ +|+|++.|.++++|+.. +..+..+..|
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h 256 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH 256 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhh
Confidence 999988776 67799999999999998 99999999999999665 3344455544
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.71 E-value=1.8e-07 Score=104.40 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=96.8
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
....+.|.|||. .++.. .+..+.+|+..+| ..+.++++|++.|+|
T Consensus 14 ci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKDtVyc 58 (1081)
T KOG1538|consen 14 CINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKDTVYC 58 (1081)
T ss_pred chheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccceEEE
Confidence 456677888876 33332 2356778877766 467889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--------eEEE--Eec-------------------------cc--CCCEEEE
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESF--------TVKS--TLE-------------------------EH--TQWITDV 603 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~--------~~l~--tl~-------------------------gH--~~~ItsV 603 (655)
|+|+.||+++|+|+.|+.|.||...-. ..+. .|. .| ...|.++
T Consensus 59 VAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~C 138 (1081)
T KOG1538|consen 59 VAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICC 138 (1081)
T ss_pred EEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEe
Confidence 999999999999999999999975311 0000 010 01 2457788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|.-||.+|+-|-.||||.|-+....+.+..-..+.. ...|.+++|+|+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~---Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS---NSPIWSICWNPS 187 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC---CCCceEEEecCC
Confidence 8999999999999999999987655444444333322 345678888874
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=3.2e-07 Score=92.42 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC----------CCEE
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWIT 601 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~----------~~It 601 (655)
.++..||+.++ +.-+++++|++.|-|+.--....-++||++||+|||||+++.+++.++...+ ..|-
T Consensus 136 ~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 136 GVIYQVDLEDG---RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred eEEEEEEecCC---EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 33334444444 5667889999999999885555678999999999999999999998876321 2355
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+|+- +..+|+.|+. ..+.||.+++.+|..+|.-.
T Consensus 213 ala~--~edWlvCGgG-p~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred EEec--cCceEEecCC-CceeEEeccCCCceEEEecc
Confidence 6654 4567777654 47899999988887776543
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=9.7e-08 Score=101.06 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-cCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
.|...++||++|+.|..+++|.....- . ..+.+++... .-|.+.|.|++|....+.|++|+.+++|
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~------~-------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELM------V-------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHH------h-------hcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 456678999999999999999543220 0 0111233322 2456889999999989999999999999
Q ss_pred EEEeCCCCeEEEEecccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 580 VLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~---~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.+.|+++...+..+. |. +.|+.+..+|..+.|++.+.|+.|.+||.+.......+.|... ....+.++-|||
T Consensus 130 I~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHP 204 (609)
T ss_pred Eeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecC
Confidence 999999999888775 44 4899999999999999999999999999986542222222111 223456777877
No 187
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=6.3e-08 Score=70.40 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.3
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
++++.++.+|...|++|+|+|++.+|+|+|.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999998
No 188
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=4.2e-07 Score=95.84 Aligned_cols=90 Identities=18% Similarity=0.320 Sum_probs=72.8
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.+...++| ..|+++.|.+||..|++++. |..|+|||++++.++....---+.++-+.|+||+.+|+.++.|+..+||.
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 44555677 68999999999999999985 57899999999987765544567899999999999999999999999994
Q ss_pred C-CCCeEEEEEec
Q 006229 626 T-ENVRKLTFICC 637 (655)
Q Consensus 626 l-~tg~~v~~l~~ 637 (655)
. .+..+.+.+.+
T Consensus 267 e~q~wt~erw~lg 279 (445)
T KOG2139|consen 267 ENQSWTKERWILG 279 (445)
T ss_pred hcccceecceecc
Confidence 4 45555554443
No 189
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=1.2e-07 Score=100.93 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=75.0
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.+-||-+-|+.|+|+||++.|+|+..|.+|||-.....-.+.+| -||+..|..++.-++ ..|+|||.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 44589999999999999999999999999999877665555555 589999999998764 5699999999999999999
Q ss_pred CeEEEEEec
Q 006229 629 VRKLTFICC 637 (655)
Q Consensus 629 g~~v~~l~~ 637 (655)
|++++++..
T Consensus 225 gk~L~t~dl 233 (390)
T KOG3914|consen 225 GKLLDTCDL 233 (390)
T ss_pred CCcccccch
Confidence 999976543
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.65 E-value=2.1e-07 Score=96.84 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=106.6
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.+.+++.|+.|+. .++.+.....|.++..... ..++...++..|...|+
T Consensus 11 ~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~~----------------~~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 11 EPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLGA----------------DLWEPAHTLSEHDKIVT 59 (361)
T ss_pred CceeeeeecCCCc---------------eEEeccCCceEEEEEecCC----------------CCceeceehhhhCccee
Confidence 4678888998876 3455555556666622211 12467788999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC-CCC--eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCT-ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl-~t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+|+|+|.++.|++|+.|+...||.. ..+ +..-.+..|...+++|.|+|.++.+|+||.-+.|.||=.+...-- .+.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-WVs 138 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-WVS 138 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-ehh
Confidence 9999999999999999999999998 333 445566789999999999999999999999999999987643221 122
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
.|-..-....|.++.|||+
T Consensus 139 KhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred hhhCCccccceeeeeccCC
Confidence 2222223455778999985
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=1.7e-07 Score=97.43 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=73.0
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..+.+|.+.|.|++.+-+|.++||+|..|| |||||..+|+.+..++.- ...|+|++|+|+..+||.+|+.|||+|+.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 567799999999999999999999999987 899999999999999633 34699999999999999999999999999
Q ss_pred CCC
Q 006229 626 TEN 628 (655)
Q Consensus 626 l~t 628 (655)
++.
T Consensus 255 l~~ 257 (346)
T KOG2111|consen 255 LRD 257 (346)
T ss_pred eec
Confidence 875
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.62 E-value=5.8e-08 Score=104.82 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=107.0
Q ss_pred CCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec
Q 006229 479 ASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
...+++.+|+-.|+... .+...+|-+.--+|++++..+-++--++..| ..|..+.
T Consensus 188 AQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-------------------klVa~~~ 248 (545)
T KOG1272|consen 188 AQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-------------------KLVASIR 248 (545)
T ss_pred hhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechh-------------------hhhHHHH
Confidence 35678888888884321 2223344555455667766665555444333 4455555
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
.-.+.+..++-+|-...+-+|...|+|.+|...+.+++..+.-|.+.|.+|++.++|+|+||.+.|..|+|||+|+...+
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 55677888888998889999999999999999998988888899999999999999999999999999999999988777
Q ss_pred EEEec
Q 006229 633 TFICC 637 (655)
Q Consensus 633 ~~l~~ 637 (655)
+++..
T Consensus 329 ~t~~t 333 (545)
T KOG1272|consen 329 HTYRT 333 (545)
T ss_pred ceeec
Confidence 66654
No 193
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.60 E-value=1.6e-07 Score=98.00 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=81.5
Q ss_pred CCCCeeEEEEcCCC----CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 554 STSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 554 H~~~V~sl~fSpdG----~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
|......|+|+-|. .+||.||.-|.|||.|+.++++...+.||...|+.|.|+|+. .+|+|+|.|.+||+||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 55566778887632 389999999999999999999999999999999999999975 6899999999999999999
Q ss_pred CeEEEEEecccceeeeeceeeEEEecC
Q 006229 629 VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 629 g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..|+..|.+-.. +...|-++.|+++
T Consensus 168 ~~Cv~VfGG~eg--HrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 168 DVCVAVFGGVEG--HRDEVLSVDFSLD 192 (385)
T ss_pred CeEEEEeccccc--ccCcEEEEEEcCC
Confidence 999998854221 2333446777654
No 194
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=7.1e-07 Score=96.50 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=112.6
Q ss_pred CCceeccCCCCceEEEEecCCCCcccccCc----------ccCCCCc-EEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPN----------QLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~lasss~----------~l~~~~~-~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
...++.+++.++.+.+|..||.....+.+. .|.+.+. .+++++.-.-..+|+....+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak------------ 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK------------ 291 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc------------
Confidence 335778888999999999999644333322 3344444 44555444455555433221
Q ss_pred CCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 540 GKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
+..+....++. ..+..+.+|+++++|+..|..|.|.|....|++.+.+++ -.+.|.+++|+.+++.|+.++.+
T Consensus 292 -----~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 -----VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred -----cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 12233333443 346788899999999999999999999999999999887 77899999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccc
Q 006229 619 RTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|.|.+||++...|++.+...++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred ceEEEEecCCcceEEEEeecCc
Confidence 9999999999999998875443
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.58 E-value=5.9e-07 Score=98.50 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=98.0
Q ss_pred eeccCCCCceEEEEecCCCC-------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------CCCCcccccccc
Q 006229 474 LQHNGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------DPRDRVGRSAEV 539 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~-------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~-------d~~d~~~~l~d~ 539 (655)
.+..++.|+...+.+..+.. .-++.+.+....+.-|.+.+.||.|++| +.+|. ......---|+.
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiW-SrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIW-SRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEE-eccchHHHHHhhcCceeEEEEECC
Confidence 34444555666666555521 1123333555555667788899999999 33332 000000011222
Q ss_pred CCCce---------------eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE
Q 006229 540 GKGFT---------------FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (655)
Q Consensus 540 ~~~~t---------------~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa 604 (655)
.+... -..+-..++|.+-|.||+|++...++++||+|.+.+|||-- |..+.+-..|+.+|++|+
T Consensus 156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVA 234 (737)
T ss_pred CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeee
Confidence 21110 11244567899999999999999999999999999999975 566667778999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 605 FSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 605 fsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
|.|+ +.++.+|.. ++|+=..+.|.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p~~GS 258 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSPRVGS 258 (737)
T ss_pred eccc-cceeeeeee-eeeecCCCccc
Confidence 9999 667777664 66654444443
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.57 E-value=3.1e-07 Score=95.56 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=88.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
+..+....|++|+.|++..+|...++ .+++..-.+..|+..++||.|+|.++.||+||..+.|.
T Consensus 62 dWap~snrIvtcs~drnayVw~~~~~----------------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 62 DWAPKSNRIVTCSHDRNAYVWTQPSG----------------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred eecCCCCceeEccCCCCccccccCCC----------------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence 44455567889999999999954333 34556666777889999999999999999999999999
Q ss_pred EEeCCCCe----EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 581 LWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 581 IWDl~t~~----~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
||-++... ..++-+.+...|++++|+|++-+|+.||.|+.+||+..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 99876432 23334568899999999999999999999999999964
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.52 E-value=1.8e-06 Score=89.97 Aligned_cols=87 Identities=24% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCCeE--EEEecccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEecccce
Q 006229 566 DGKLLAT-GGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 566 dG~lLaS-gs~DgtVrIWDl~t~~~--l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-VrVWDl~tg~~v~~l~~~~~~ 641 (655)
+..+||. |-.-|.|.|-|+...+. -..+.+|...|.||+++-+|.+|||+|..|| |||||.++|+.+..++-+..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-
Confidence 3335555 44568999999976655 3678899999999999999999999999998 99999999999999875543
Q ss_pred eeeeceeeEEEecC
Q 006229 642 FVSTAIGSCFFAPT 655 (655)
Q Consensus 642 v~s~~Vss~~F~P~ 655 (655)
...|.+++|+|+
T Consensus 226 --~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 226 --RADIYCIAFSPN 237 (346)
T ss_pred --hheEEEEEeCCC
Confidence 556889999986
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=8.3e-07 Score=103.55 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=112.8
Q ss_pred eeccCCCCceEEEEecCCCCccc----------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLT----------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~la----------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.+...+.-+.+.+|+.+.+..++ .+-..--.++..++.|..||.|++|+..-..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~---------------- 1242 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP---------------- 1242 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC----------------
Confidence 34445557889999998743221 1111112335789999999999999654331
Q ss_pred eeeeEEeecCCCCC--eeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEE--EecccC--C-CEEEEEEcCCCCEEEEE
Q 006229 544 TFTEFQLIPASTSK--VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS--TLEEHT--Q-WITDVRFSPSLSRLATS 615 (655)
Q Consensus 544 t~~~v~~l~gH~~~--V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~--tl~gH~--~-~ItsVafsPdg~~LaSg 615 (655)
....+...+.|+.. |..+.+-+.|- .|++|+.||.|++||++...... ++..|. + .++++..+++...||||
T Consensus 1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeec
Confidence 01345666778877 99999998665 59999999999999998743222 223343 3 59999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccc--eeeeeceeeEEEec
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKC--IFVSTAIGSCFFAP 654 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~--~v~s~~Vss~~F~P 654 (655)
+. +.|+|||+. |+.+..+..... ......+++++|||
T Consensus 1323 s~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred Cc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc
Confidence 99 999999997 555555543322 12334468899998
No 199
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=3.9e-07 Score=98.44 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=103.6
Q ss_pred ceeccCCCCceEEEEecCC---------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGSDG---------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+...+.++.+.+|+... .+.+..++.++..+..++|+||..|-|.+|+-.+.- ...
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~-------------~s~ 423 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF-------------AST 423 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh-------------ccC
Confidence 3444444455666676654 222333444556777899999999999999433221 112
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecc---cCCCEEEEEEcCCCCEEEEEeCC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~--DgtVrIWDl~t~~~l~tl~g---H~~~ItsVafsPdg~~LaSgS~D 618 (655)
..+++.++..-+..|+++.|++|+.+||.+|. +..+|+-.+.+......|.. --+.|+||+|+|.+.+||.|-.+
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 23456666666778999999999999988875 56799999998887777753 33569999999999999999999
Q ss_pred CcEEEEECC
Q 006229 619 RTVRVWDTE 627 (655)
Q Consensus 619 gtVrVWDl~ 627 (655)
|.|.||.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999874
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=4.2e-07 Score=95.25 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=92.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl 584 (655)
..++++...++|++++...+ ..+..+++|...++.+.|.. .+..+.+|+.||+||+||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 56788888899999954433 45677788888899999987 4668999999999999999
Q ss_pred CCCeEEE--EecccC-CCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeE-EEEEecccceeeeeceeeEEEecC
Q 006229 585 ESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENVRK-LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~t~~~l~--tl~gH~-~~ItsVafsPdg~~LaSgS~----DgtVrVWDl~tg~~-v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++..... .+..|. ....|++..-.+..+++|.. |-.|.+||+|.... +..+.. .+.-+|..+.|||+
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e----SH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE----SHNDDVTQLRFHPS 176 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh----hccCcceeEEecCC
Confidence 9865443 445666 34556665546677777764 77899999998765 443321 23456778999995
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.8e-06 Score=91.99 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=82.3
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.++|..+.-...+|+|+...|+|++|++|..-+.+..+|+++++.+.. +.|-++.|++|..+|.+.+|++||-|+.|||
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 356777777788999999999999999999999999999999998877 8999999999999999999999999999999
Q ss_pred EECCCCeEEEEE
Q 006229 624 WDTENVRKLTFI 635 (655)
Q Consensus 624 WDl~tg~~v~~l 635 (655)
+|+.+...++.+
T Consensus 317 hD~ktrkll~kv 328 (412)
T KOG3881|consen 317 HDIKTRKLLHKV 328 (412)
T ss_pred eecccchhhhhh
Confidence 999997666543
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.47 E-value=1.4e-06 Score=88.81 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCCeeEEEEcC-CCC--EEEEEeCCCcEEEEeCCCCeEE----------EEecccC-----------------------
Q 006229 554 STSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESFTVK----------STLEEHT----------------------- 597 (655)
Q Consensus 554 H~~~V~sl~fSp-dG~--lLaSgs~DgtVrIWDl~t~~~l----------~tl~gH~----------------------- 597 (655)
..+.|.|..|.. +++ +|+.|-++|.|.+||+.++..+ .....|.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 456788888655 444 6677788999999999875221 1111222
Q ss_pred -----------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 598 -----------------------QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 598 -----------------------~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..|..|++.||++.+||++.|++||||+-++...+..+..|+. .|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfsp 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSP 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCC
Confidence 2355667788999999999999999999999999988887764 466889998
Q ss_pred C
Q 006229 655 T 655 (655)
Q Consensus 655 ~ 655 (655)
+
T Consensus 304 d 304 (323)
T KOG0322|consen 304 D 304 (323)
T ss_pred C
Confidence 5
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.47 E-value=2.8e-07 Score=99.62 Aligned_cols=129 Identities=18% Similarity=0.255 Sum_probs=90.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.-.+.+-.+..|...|+|.+|-.... ..+..+-.|.++|.+|++.++|+|+||.|.|..|+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~sk-------------------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSK-------------------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCc-------------------chHHHHHhcCCCcceEEECCCCcEEeeccccccee
Confidence 33666678899999999999933222 34445568999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCC--eEEEEEecccceeeeeceeeEEEec
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENV--RKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD-l~tg--~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|||++....+.++.. ......++||-.| ++.+|..-.|.||. .-.+ .+-.-+..|.. ...|.++.|+|
T Consensus 319 IWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~---~~~V~~l~FcP 389 (545)
T KOG1272|consen 319 IWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRC---GGPVEDLRFCP 389 (545)
T ss_pred Eeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhcc---Ccccccceecc
Confidence 999999887766654 4566778887443 44455555899994 3332 22222222322 22566777776
No 204
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=7.1e-07 Score=98.99 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=66.3
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVr 622 (655)
...+-..+++|++.|.||..+|.|.||++|+.||+||||.+.||+|+.++. ..+.|.||+|+|.+.. |+.++.+.++.
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 345667789999999999999999999999999999999999999999987 6679999999997653 33333333455
Q ss_pred EEEC
Q 006229 623 VWDT 626 (655)
Q Consensus 623 VWDl 626 (655)
|-+.
T Consensus 468 ivnp 471 (733)
T KOG0650|consen 468 IVNP 471 (733)
T ss_pred EeCc
Confidence 5543
No 205
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.46 E-value=9.4e-07 Score=90.97 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=84.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++|+.|+-|++|+.... ..++.++.+|+--|.+|.|+| ...+|+|||.|..|.+|+..
T Consensus 228 ~~lvt~gDdgyvriWD~R~t------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKT------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEcCCCccEEEEeccCC------------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 56899999999999966554 246788899999999999999 55699999999999999642
Q ss_pred CC-----------------------------eEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 006229 586 SF-----------------------------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTE 627 (655)
Q Consensus 586 t~-----------------------------~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~ 627 (655)
+- -.+.++..|++.|++++|+.-.. .+||-|.||+|.|=.+.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 10 12457888999999999998655 57899999999887664
No 206
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.6e-07 Score=65.32 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
+++.++.+|.+.|.+|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.45 E-value=6.5e-07 Score=104.51 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=102.5
Q ss_pred ceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
-....++....+++|.+....... +....+.-.++++++.|.|.++|+|...+....
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------------- 210 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------------- 210 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------------
Confidence 455667777888889887422111 111122345588999999999999965554210
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-CEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.....+|+..|..|+|+|. +|+|++.|.++++|+... +.+.++++|.. .|+.++..++...++|++.|+++|+
T Consensus 211 ---~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 211 ---GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKL 284 (967)
T ss_pred ---CcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhh
Confidence 0244589999999999988 999999999999997654 55558888875 5999999999999999999999999
Q ss_pred EECCC
Q 006229 624 WDTEN 628 (655)
Q Consensus 624 WDl~t 628 (655)
||+..
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 99875
No 208
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.45 E-value=2.1e-07 Score=63.28 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhc
Q 006229 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (655)
Q Consensus 10 ~~L~~yIydyl~k~~~~~tA~~f~~e~ 36 (655)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999995
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=101.81 Aligned_cols=70 Identities=24% Similarity=0.422 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.|..++|-|||.-|+.+.. ..+.|||+..|..+.+++||.+.|+||+|+.||+++|||+.|+.|.||+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 5889999999997777664 568899999999999999999999999999999999999999999999865
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.43 E-value=3.9e-06 Score=99.46 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
...+++.++++||.||+|++|+...-. ..+.+.+..-++.-....|.++.+.+.+..+|.++.||.|+
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 336677899999999999999665441 11233344444444567788888888899999999999999
Q ss_pred EEeCCCC-------------------eEE----------------------------------EEe--cccCCCEEEEEE
Q 006229 581 LWCTESF-------------------TVK----------------------------------STL--EEHTQWITDVRF 605 (655)
Q Consensus 581 IWDl~t~-------------------~~l----------------------------------~tl--~gH~~~ItsVaf 605 (655)
+.+++.. ..+ -++ ..-.+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 8876530 000 000 012467999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 606 SPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 606 sPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+|.+.++++|+.-|.+-+||+|=+..+..+..
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccC
Confidence 99999999999999999999997776665543
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=5.6e-07 Score=95.45 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=77.7
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC------CCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~------t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
+.+.+|.+-|.+|.||.++++|++|+.|..++||+++ +.+++.... .|...|.|++|...+++|+||..|++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4557899999999999999999999999999999985 335565554 355899999999999999999999999
Q ss_pred EEEECCCCeEEEEEeccc
Q 006229 622 RVWDTENVRKLTFICCYK 639 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~ 639 (655)
.+-|+.+...+..+....
T Consensus 130 I~HDiEt~qsi~V~~~~~ 147 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENN 147 (609)
T ss_pred EeeecccceeeeeecccC
Confidence 999999988887765443
No 212
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.42 E-value=3.5e-06 Score=92.04 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=90.4
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+....+++++.|+.|++|+ +. -..+..+ -..++.|++|+|.| .+|.|...|..-|.
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~---------------k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DH---------------KLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred CCChhheeeccCcceEEEcc--CC---------------ceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 44446678888999999994 11 1111111 23678899999999 99999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~-tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++-..+..-. ....+++|+|+|+|.+||.||.|+.|+||-+. ++..+..+..++. ..|..+.|++|
T Consensus 434 d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g----s~ithLDwS~D 502 (626)
T KOG2106|consen 434 DTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG----SPITHLDWSSD 502 (626)
T ss_pred ecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC----ceeEEeeecCC
Confidence 999855554333 38899999999999999999999999999986 4444433322221 34566777764
No 213
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=6.2e-07 Score=99.43 Aligned_cols=126 Identities=18% Similarity=0.225 Sum_probs=100.1
Q ss_pred CceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec
Q 006229 481 SKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 481 d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
.+.+.+|+... ++...+++..+++.++-|..|+.|+.+++|+..-+ -++.++++
T Consensus 586 q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr 647 (733)
T KOG0650|consen 586 QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLR 647 (733)
T ss_pred ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhh
Confidence 35566666554 33344556677888889999999999988843222 14677888
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC------C---CeEEEEecccCCC----EEEEEEcCCCCEEEEEeCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------S---FTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~------t---~~~l~tl~gH~~~----ItsVafsPdg~~LaSgS~Dg 619 (655)
-|...|++|+||+.-.+|++|+.|+++.|+.-. . --.+..|.||... |.+++|+|.-.+|+|++.||
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence 999999999999999999999999999998532 1 1356788899876 99999999999999999999
Q ss_pred cEEEE
Q 006229 620 TVRVW 624 (655)
Q Consensus 620 tVrVW 624 (655)
+||||
T Consensus 728 tirlf 732 (733)
T KOG0650|consen 728 TIRLF 732 (733)
T ss_pred eEEee
Confidence 99999
No 214
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=5.1e-06 Score=92.35 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=88.1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
..|.+.|.++-++.+-..|.|++.|+.|.+|+..++..++.+.+-...+.+++.+|||..|+++|. .|++||+++++.
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kev 176 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEV 176 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceE
Confidence 368999999999999999999999999999999999999999999999999999999999999874 799999999999
Q ss_pred EEEEecccceeeeecee
Q 006229 632 LTFICCYKCIFVSTAIG 648 (655)
Q Consensus 632 v~~l~~~~~~v~s~~Vs 648 (655)
+.+|++|...+.+..|.
T Consensus 177 v~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 177 VITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEEecCCCcceEEEEEE
Confidence 99999999887766554
No 215
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.39 E-value=2.3e-06 Score=89.30 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred EEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEc
Q 006229 485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564 (655)
Q Consensus 485 l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fS 564 (655)
..|+|||. -|.+-+.|..+.+|..+.+...+..-..+ ..... ..++. -....|..++|-
T Consensus 55 ckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~~---~~~r~--~eg~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSKH---LSYRY--QEGETVYDYCWY 113 (406)
T ss_pred ceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCcc-ccccc---eeEEe--ccCCEEEEEEee
Confidence 46888887 45566789999999766543222111100 00000 11222 223568888886
Q ss_pred -------CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCC---EEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeE
Q 006229 565 -------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRVWDT-ENVRK 631 (655)
Q Consensus 565 -------pdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~---ItsVafsPdg~~LaSgS~DgtVrVWDl-~tg~~ 631 (655)
|+..++++.+.|.-|++||.-+|+....+.+ |-+. -.||+|+|||..|+.| ...+|||+|+ |.|..
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 6778999999999999999999999888864 4444 4589999999999876 6679999999 55543
Q ss_pred E--EEEecccceeeeeceeeEEEecC
Q 006229 632 L--TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 632 v--~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. .+...+........+++++|+|.
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCC
Confidence 2 22223334444667888999984
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=2.1e-06 Score=100.24 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCCccccccccCCCceeeeEEeec-CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCC--EE
Q 006229 529 PRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQW--IT 601 (655)
Q Consensus 529 ~~d~~~~l~d~~~~~t~~~v~~l~-gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~--It 601 (655)
++.+++++||..+... +..+. +....|+++.-+- .|..|+.|..||.||+||.+.. ..+...+.|.+. |.
T Consensus 1184 Gd~r~IRIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQV---VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred CCeeEEEEEeccccee---EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 3456667777776532 22222 2334466654443 5789999999999999998754 357788899998 99
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 006229 602 DVRFSPSLSR-LATSSADRTVRVWDTENV 629 (655)
Q Consensus 602 sVafsPdg~~-LaSgS~DgtVrVWDl~tg 629 (655)
.+.+.+.|-. |+|||.||.|++||+|..
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccC
Confidence 9999997755 999999999999999973
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=5.7e-06 Score=92.10 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 006229 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-~DgtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~ 627 (655)
+.+++|+|||++|+.++ .|+.+.|| |+.++.. ..+..|...+++++|+|||+.|+.++ .++.++||++.
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 34789999999888765 68876665 6666554 46677888899999999999877655 57888999875
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=4.3e-06 Score=96.38 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=99.8
Q ss_pred ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC
Q 006229 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (655)
Q Consensus 497 sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D 576 (655)
....++.+.++++++|-.||.|.+|.-.... .+. ...+.+.=|...|.++.|++||.+|+|||.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEeecccc
Confidence 3445778899999999999999999433210 011 2234566788999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+.+.+|.+.+++ ..-|..-...|..+.++||+.+.+....|..|.+-...+.+...++.+
T Consensus 273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 999999999988 445666788999999999999999999999999998866554444433
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=4.2e-06 Score=93.13 Aligned_cols=88 Identities=18% Similarity=0.032 Sum_probs=67.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEe
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENVRKLTFIC 636 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl--~tg~~v~~l~ 636 (655)
.++.|+|||++|+.++.++. .+||+.+++.......+ ...++.|+|+|++|++++.|+.+++|++ .++.++..+.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 46789999999988887764 45999988765333332 3467889999999999999999998886 3688888887
Q ss_pred cccceeeeeceeeEEEec
Q 006229 637 CYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P 654 (655)
.+.. .+...+|+|
T Consensus 413 ~~~g-----~~~~p~wsp 425 (429)
T PRK01742 413 GSDG-----QVKFPAWSP 425 (429)
T ss_pred CCCC-----CCCCcccCC
Confidence 5543 245678887
No 220
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.29 E-value=6.1e-06 Score=85.32 Aligned_cols=105 Identities=25% Similarity=0.248 Sum_probs=79.2
Q ss_pred eeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCeEEEE-ecccCCCEEEEEEcC-CCCEEEEEeCCCc
Q 006229 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT 620 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~-t~~~l~t-l~gH~~~ItsVafsP-dg~~LaSgS~Dgt 620 (655)
.+.+..++.|.-.+.-+.|+. +.+++++||.|+.++.||++ ..+.+-. .+-|+..|.+|.-+| ...+|+||+.|-.
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 345667889999999999987 56799999999999999999 3344433 456999999998886 5779999999999
Q ss_pred EEEEECCC-CeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++||.|+ ++.+..-. ...-|..+.+||.
T Consensus 235 i~~~DtRnm~kPl~~~~------v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK------VGGGVWRIKHHPE 264 (339)
T ss_pred eeeeehhcccCccccCc------cccceEEEEecch
Confidence 99999995 33332111 1234666777763
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.22 E-value=2.6e-05 Score=85.38 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=79.2
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
++++-..++.|.+.+... .+.+.++......-..+.|++||+++++++.|+.|.++|+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 345555677888874333 2456666654443455789999999999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecc
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.+.++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+...
T Consensus 69 ~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 69 KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 9999987443 467899999999988776 5899999999999999887654
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.22 E-value=7.9e-06 Score=93.15 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=65.8
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWD 625 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWD 625 (655)
+..+..|.++|+++.++|=+..++..+.|-+||||... ...++..+..+.+.|++++|||.. ..++++..||.|.|||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 34555688999999999965544444449999999988 667788888899999999999965 4677888899999999
Q ss_pred CCC
Q 006229 626 TEN 628 (655)
Q Consensus 626 l~t 628 (655)
+..
T Consensus 471 Ll~ 473 (555)
T KOG1587|consen 471 LLQ 473 (555)
T ss_pred hhc
Confidence 963
No 223
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.18 E-value=6.5e-05 Score=82.44 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCceeccCCCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
......+++.++.+.+|+ +..-.. ......|++.+ .|+.|...+..-+.+.. +
T Consensus 379 s~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e-------------------~ 437 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE-------------------T 437 (626)
T ss_pred ChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc-------------------c
Confidence 336778888999999999 321110 01122445555 66777665554333221 1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-~~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
...+..... +..++++.|+|||.+||.|++|+.|.||.+.. ++..... +-|-..|+.+.|++|+.+|.+-|-|..|.
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEE
Confidence 123333333 78999999999999999999999999998864 3333222 22338999999999999999999999999
Q ss_pred EEEC
Q 006229 623 VWDT 626 (655)
Q Consensus 623 VWDl 626 (655)
.|..
T Consensus 517 yW~~ 520 (626)
T KOG2106|consen 517 YWKP 520 (626)
T ss_pred EEcc
Confidence 9943
No 224
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3e-05 Score=86.33 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=84.1
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
.+.+++.|..|..|...+. ..++.++.....|.+++.+|||+.|++|+ +.|++||+++.
T Consensus 116 ciyS~~ad~~v~~~~~~~~-------------------~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEK-------------------VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred ceEecCCceeEEEEecccc-------------------eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence 3556666666666643332 55667777788899999999999999987 69999999999
Q ss_pred eEEEEecccCCCEEEEEEcCC-----CCEEEEE-eCCCcEEEEECCC----CeEEEEEecccce
Q 006229 588 TVKSTLEEHTQWITDVRFSPS-----LSRLATS-SADRTVRVWDTEN----VRKLTFICCYKCI 641 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPd-----g~~LaSg-S~DgtVrVWDl~t----g~~v~~l~~~~~~ 641 (655)
+.+.+|.||.+.|+++.|--+ |.++.++ ..+.-|.+|-++. ....+.+.+.+..
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dip 238 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIP 238 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCC
Confidence 999999999999999999876 6665554 4566788887764 2333444444433
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=5.7e-05 Score=84.18 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=58.9
Q ss_pred cCCCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLa-Sgs~Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWD 625 (655)
..+.+.+.+.+|+|||+.|+ +.+.|+. |.+||+.++... .+..|...+++.+|+|||++|+..+. ++ .|.+||
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 34556678899999998665 5566655 777798887654 56667777888999999999887774 33 588889
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+.++..
T Consensus 321 ~~g~~~ 326 (435)
T PRK05137 321 ADGSNP 326 (435)
T ss_pred CCCCCe
Confidence 876544
No 226
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.16 E-value=5.6e-05 Score=80.61 Aligned_cols=115 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred cCCCCcEE-EeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcE
Q 006229 502 LTDMDRFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKA 579 (655)
Q Consensus 502 l~~~~~~L-asGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtV 579 (655)
+.+.++++ ++...++.|.+|+...... +. .... ..+.... ......+.|+|||++|+++.. +++|
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~-------l~-~~~~---~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGH-------LV-AQEP---AEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCc-------cc-ccCC---CceecCC--CCCCceEEECCCCCEEEEEecCCCEE
Confidence 44455555 4555678899996543210 00 0000 0011111 133568999999999988876 8999
Q ss_pred EEEeCCC--C--eEEEEeccc------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 580 VLWCTES--F--TVKSTLEEH------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 580 rIWDl~t--~--~~l~tl~gH------~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
.+||++. + +.+.++..+ ......+.|+|++++|+++.. +++|.+|++...
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 9999973 3 334444322 223346899999999999864 789999999643
No 227
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.15 E-value=1.9e-05 Score=90.05 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EE----EecccCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 006229 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 624 (655)
Q Consensus 554 H~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~--l~----tl~gH~~~ItsVafsPdg--~~LaSgS~DgtVrVW 624 (655)
....|+|++|+| +..+|+.|+.+|.|.+||++.+.. .. ....|...|+.|.|-.+- .-++|+|.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 357899999999 788999999999999999986644 22 123689999999997654 449999999999999
Q ss_pred ECCCCeEEEEEec-------ccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICC-------YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~-------~~~~v~s~~Vss~~F~P~ 655 (655)
+++...+...... +.....+..+.++.|+|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT 358 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC
Confidence 9986554221111 122234455677777763
No 228
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.13 E-value=5.3e-05 Score=80.77 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=70.2
Q ss_pred cCCCCcEEEecc-CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 006229 502 LTDMDRFVDDGS-LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS-~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs-~DgtV 579 (655)
+.+.++++.+++ .++.|.+|...... .....+..+.+ ...+.+++|+|+|++|++++ .++.|
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g---------------~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDG---------------IPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCC---------------CCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 345556665554 37788888553211 00011222222 23466789999999876554 56999
Q ss_pred EEEeCCCCeEEE-------EecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 006229 580 VLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 628 (655)
Q Consensus 580 rIWDl~t~~~l~-------tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~t 628 (655)
++||+++...+. .+. .......+.|+|++++|+++.. +++|.+||+..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 999997633221 111 1234678999999999988876 99999999973
No 229
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.08 E-value=7.5e-05 Score=76.62 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
+.++++++|++|+++.+....|-+|.++.. ..++ .....++.=.+..|+.....+|+++.||++.|||+|...-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999999999999987542 3333 3344556678899999999999999999999999997665555
Q ss_pred EecccceeeeeceeeEEEec
Q 006229 635 ICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 635 l~~~~~~v~s~~Vss~~F~P 654 (655)
.......-+..+|..|.|+|
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred hhcccCCCCCCceEEEEecC
Confidence 44444555777888899886
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.6e-05 Score=86.46 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=62.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWD 625 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~------DgtVrVWD 625 (655)
.++=+++-|+|.|++|+.+|.+ |.|-|||+.+.+++..++.- ..+-+.|+|||.+|+|++. |..|+||+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 4556789999999999998876 78999999999999888744 3456899999999999885 78899999
Q ss_pred CCCCeEE
Q 006229 626 TENVRKL 632 (655)
Q Consensus 626 l~tg~~v 632 (655)
.. |..+
T Consensus 389 yt-G~~l 394 (566)
T KOG2315|consen 389 YT-GSLL 394 (566)
T ss_pred ec-Ccee
Confidence 86 4444
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=5.6e-05 Score=84.26 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=73.0
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCc--E
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--V 621 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dgt--V 621 (655)
.+.+..|...|.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.|+. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3445677888999999999998888764 468999999988664 4556777888999999998765 6666665 7
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+||+.++... .+..+.. ...+..|+||
T Consensus 273 y~~d~~~~~~~-~Lt~~~~-----~~~~~~~spD 300 (435)
T PRK05137 273 YTMDLRSGTTT-RLTDSPA-----IDTSPSYSPD 300 (435)
T ss_pred EEEECCCCceE-EccCCCC-----ccCceeEcCC
Confidence 77799877653 3433322 1234566664
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=2.6e-05 Score=86.61 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=89.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-----CCeeEEEEcCCCCEEEEEeC
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-----SKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-----~~V~sl~fSpdG~lLaSgs~ 575 (655)
.+.....+|++|..|+.|..|+..+-. ++.. ......+..|. ..|+++.|+.||-.+++|..
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ks----rv~~---------l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKS----RVGT---------LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred eecCccceEEecccCceEEEecchhhh----hhee---------eecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 456666889999999999999766542 1111 11111222232 34999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 576 DKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg--~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+|.|.|||+++.+++..-. +..-.|..+.|-+.+ ..|+|. ....+||||-.+|+....+....
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC
Confidence 9999999999988774432 345678999998763 445554 34479999999998887766543
No 233
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.07 E-value=9.8e-06 Score=82.63 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=63.8
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 006229 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~t 628 (655)
..|.+++-+| ...++++|+.||.|-|||.+... +...+..|+..|+-|-|+| ++..|+|++.||.+-.||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3499999999 56689999999999999998764 4456689999999999999 567899999999999999884
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=4.8e-05 Score=84.74 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=55.4
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC--CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRV 623 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl--~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrV 623 (655)
.+..+...+.++.|+|||++|+..+. ++...||.+ .++.... +..+.......+|+|||++|+..+.++ .|.+
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 34445555677899999998876654 466666654 4544322 222233455789999999998877654 5999
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
||+.++...
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999887644
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00016 Score=80.73 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=53.4
Q ss_pred CeeEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCCe
Q 006229 557 KVESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW--DTENVR 630 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSg-s~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gtVrVW--Dl~tg~ 630 (655)
.+.++.|||||+.|+.. +.++ .|.+||+++++... +..+...+...+|+|||+.|+.++.+ +...|| |+.++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 35578999999977754 4444 58899999887654 44455678899999999998877764 444555 676654
Q ss_pred E
Q 006229 631 K 631 (655)
Q Consensus 631 ~ 631 (655)
.
T Consensus 323 ~ 323 (429)
T PRK03629 323 P 323 (429)
T ss_pred e
Confidence 3
No 236
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=1.8e-05 Score=83.40 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=100.2
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtV 579 (655)
.|...+.+|..|+-.+.|-+.+..... .+..+ +...+ -|.+.|+|+..-. ++.+|.+.+.+|+|
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rn-------------qG~~~-~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRN-------------QGNGW-CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecc-------------cCCCc-ceEEE-EcCcchhhhhhhccccceEeeccCcCce
Confidence 456667889999999998888554431 11111 22222 4778899987666 67889999999999
Q ss_pred EEEeCCCCeE---EEEecccCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 580 VLWCTESFTV---KSTLEEHTQWITDVR--FSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 580 rIWDl~t~~~---l~tl~gH~~~ItsVa--fsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
++||.+-.++ +.+++||...-.-+- +.+....|++++.|.-.|||.++.|..+.++.-.... ...++.+++|.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~-~e~d~~sv~~~ 401 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA-SEVDIPSVAFD 401 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcc-ccccccceehh
Confidence 9999998777 889999976544433 4566788999999999999999999998887655443 33455566664
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.00021 Score=79.68 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=56.2
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCC
Q 006229 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN 628 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dgt--VrVWDl~t 628 (655)
.+.+.++.|+|||+.|+ +.+.++ .|.+||+.+++.. .+..|....++++|+|||++|+.++. ++. |.++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456889999999665 555555 5999999988754 56667666788999999999887774 555 66677776
Q ss_pred CeE
Q 006229 629 VRK 631 (655)
Q Consensus 629 g~~ 631 (655)
++.
T Consensus 326 g~~ 328 (433)
T PRK04922 326 GSA 328 (433)
T ss_pred CCe
Confidence 654
No 238
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=3.2e-05 Score=89.37 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=68.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.|+-.++|+++||.++++|+|..||.|.||.--. ......|..|.+.|+++.|+++|.+|+||+..|.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666689999999999999999999999995321 234557789999999999999999999999999999999998
Q ss_pred Ce
Q 006229 629 VR 630 (655)
Q Consensus 629 g~ 630 (655)
++
T Consensus 283 ~~ 284 (792)
T KOG1963|consen 283 GK 284 (792)
T ss_pred CC
Confidence 76
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00014 Score=81.13 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=55.8
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHD-KKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~D-gtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWD 625 (655)
..+...+..+.|+|||+.|+..+.+ +...|| |+.++... .+..+...+.+++|+|||++|+..+.+ ..|.+||
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 3344567889999999988777654 444444 67666543 444445556789999999998877654 3588999
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+.++..
T Consensus 362 l~~g~~ 367 (429)
T PRK03629 362 LATGGV 367 (429)
T ss_pred CCCCCe
Confidence 988764
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=8.7e-05 Score=78.74 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=72.8
Q ss_pred eccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccC-CCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC
Q 006229 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~-D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
.+++..+.+.+.|+.||. .++++|. |..|.+|++..+. .+.....
T Consensus 191 ~~pgh~pVtsmqwn~dgt---------------~l~tAS~gsssi~iWdpdtg~-------------------~~pL~~~ 236 (445)
T KOG2139|consen 191 QDPGHNPVTSMQWNEDGT---------------ILVTASFGSSSIMIWDPDTGQ-------------------KIPLIPK 236 (445)
T ss_pred eCCCCceeeEEEEcCCCC---------------EEeecccCcceEEEEcCCCCC-------------------ccccccc
Confidence 344445677788888766 4455554 5678888654441 1111123
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
--+.++-+.|||||.+|+.+..|+..+||..........+.--.+.|...+|+|+|++|+-++
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 346788999999999999999999999996543332223333445999999999998755443
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00017 Score=80.42 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 006229 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl--~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl 626 (655)
.+.+.++.|+|||+.|+ +.+.|+...||.+ .++. +..+..|...+++..|+|||++|+..+. ++...||.+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 34567899999999776 5677888777754 4443 4566667667788999999998887664 566677755
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00013 Score=81.26 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRV 623 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrV 623 (655)
.+..+...+..++|+|||++|+.++. ++. |.++|+.+++... +..+...+..++|+|||++|+..+.++ .|.+
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 34445555678999999998887764 444 6666777765433 222334456789999999988766443 5999
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
||+.++...
T Consensus 365 ~d~~~g~~~ 373 (433)
T PRK04922 365 MDLSTGSVR 373 (433)
T ss_pred EECCCCCeE
Confidence 999887654
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.00019 Score=80.15 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCcEEEEe--CCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 006229 556 SKVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs-~DgtVrIWD--l~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~t 628 (655)
+.+...+|+|||+.|+..+ .++...||. +.. +.....+..+...+.+.+|+|||++|+..+.+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3456789999999777665 467666664 432 23344555566678899999999998877653 3699999998
Q ss_pred CeEE
Q 006229 629 VRKL 632 (655)
Q Consensus 629 g~~v 632 (655)
++..
T Consensus 361 g~~~ 364 (428)
T PRK01029 361 GRDY 364 (428)
T ss_pred CCeE
Confidence 8754
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.85 E-value=0.00047 Score=75.61 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEEC
Q 006229 553 ASTSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl 626 (655)
.+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++... .+..|...+...+|+|+|++|+.++. ++ .|.+||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3445677899999999665 444444 5888999887544 44456566678899999999887665 33 5888888
Q ss_pred CCCeEE
Q 006229 627 ENVRKL 632 (655)
Q Consensus 627 ~tg~~v 632 (655)
.+++..
T Consensus 310 ~~~~~~ 315 (417)
T TIGR02800 310 DGGEVR 315 (417)
T ss_pred CCCCEE
Confidence 876543
No 245
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.00058 Score=76.78 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
...+.|.||+++|+...|+.|+.||.|++||...+... +.-+.-..+.++|+|+|..+++|+.-|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999999776433 334566789999999999999999999999999873
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.80 E-value=7.8e-05 Score=88.81 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred eeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t-------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
..|..+..|...|..++.+++. .+|+|||.||+|||||++. .++..++......+.+|.+++.+..+|.++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4678888899999999998854 8999999999999999853 2445555556788999999999999999999
Q ss_pred CCcEEEEECCC
Q 006229 618 DRTVRVWDTEN 628 (655)
Q Consensus 618 DgtVrVWDl~t 628 (655)
||.|++.+++-
T Consensus 1119 DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1119 DGSVRVLRIDH 1129 (1431)
T ss_pred CCeEEEEEccc
Confidence 99999999874
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.00016 Score=80.52 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=71.8
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------ccCC-----CEEEEEEcCCCCEEEEEeC
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~------gH~~-----~ItsVafsPdg~~LaSgS~ 617 (655)
..+....+.|++|..++...+|++|+.||.|-+||.++...+.++. .|.. .|++|.|+-+|-.++.|+.
T Consensus 169 ~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 3444456889999999988899999999999999998776665554 2333 3999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEE
Q 006229 618 DRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l 635 (655)
+|.|.|||+++.+.+..-
T Consensus 249 ~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVK 266 (703)
T ss_pred CCcEEEEEcccCCceeec
Confidence 999999999987766443
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.80 E-value=0.00058 Score=74.89 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDT 626 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~D-g--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrVWDl 626 (655)
.+...+.+..|+|||++|+.++.. + .|.+||+.+++.. .+..+...+..++|+|+|++|+.++.++ .|.+||+
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 344445678999999988766543 3 5778888876644 4444667788899999999999988876 7999999
Q ss_pred CCCeE
Q 006229 627 ENVRK 631 (655)
Q Consensus 627 ~tg~~ 631 (655)
.++..
T Consensus 354 ~~~~~ 358 (417)
T TIGR02800 354 DGGGE 358 (417)
T ss_pred CCCCe
Confidence 87543
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.00052 Score=76.64 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=60.6
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---CCcEEEE
Q 006229 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (655)
Q Consensus 551 l~gH~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---DgtVrVW 624 (655)
+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +......+.+..|+|||++|+..+. +..|.+|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 34444567789999999988876654 468999999887653 4333456788999999998775443 3468899
Q ss_pred ECCCCeEEEEE
Q 006229 625 DTENVRKLTFI 635 (655)
Q Consensus 625 Dl~tg~~v~~l 635 (655)
|+.+++.....
T Consensus 401 dl~~g~~~~Lt 411 (428)
T PRK01029 401 SLITKKTRKIV 411 (428)
T ss_pred ECCCCCEEEee
Confidence 99887654433
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.78 E-value=5.8e-05 Score=92.59 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC
Q 006229 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 530 ~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg 609 (655)
.++.+.+||.........|. ..|.+.++|+++.|...+|+|||.+|.|+|||++..+.++++.. ++ ..
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~ 2380 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR 2380 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh
Confidence 34445677766554444555 68999999999999999999999999999999998888877764 44 56
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
.++++|+..|.|+||++.....++++..
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred heeeccCcccceEEEEccccchhhcCch
Confidence 7999999999999999998777766543
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.74 E-value=0.00019 Score=75.93 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=72.1
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-----------------------------------------
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------------------------------------- 585 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----------------------------------------- 585 (655)
..+.+..|...|..+.|+-...++++.+.|+.+.--..+
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 345566789999999999988999999998876432211
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEEecccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL-TFICCYKC 640 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v-~~l~~~~~ 640 (655)
....+.++.+|.+.|++++|.|...+|+||..|..|.+||+-.++-+ ..+.+|..
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 12356788899999999999999999999999999999999754433 34444443
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.00088 Score=74.33 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~tg 629 (655)
+.+.+..|+|||+.|+ +.+.++ .|.+||+.+++.. .+..+...++...|+|||+.|+..+. ++ .|.+||+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3455789999999776 444555 5888899887654 45666667788999999998776664 33 5778888877
Q ss_pred eEE
Q 006229 630 RKL 632 (655)
Q Consensus 630 ~~v 632 (655)
+..
T Consensus 322 ~~~ 324 (430)
T PRK00178 322 RAE 324 (430)
T ss_pred CEE
Confidence 643
No 253
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=8.4e-05 Score=50.29 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=35.5
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.++..+..|...|++++|++++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778888999999999999999999999999999996
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.00082 Score=74.55 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=61.0
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCC--cEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dg--tVr 622 (655)
+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||++|+ +.+.++ .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3444566788999999999988876644 368899999886543 333444566799999999876 555555 588
Q ss_pred EEECCCCeEE
Q 006229 623 VWDTENVRKL 632 (655)
Q Consensus 623 VWDl~tg~~v 632 (655)
+||+.++...
T Consensus 271 ~~d~~~~~~~ 280 (430)
T PRK00178 271 VMDLASRQLS 280 (430)
T ss_pred EEECCCCCeE
Confidence 8899987643
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.61 E-value=0.00045 Score=73.06 Aligned_cols=86 Identities=17% Similarity=0.371 Sum_probs=76.1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
...+.++.+|.+.|+|+.|.+..++|.+|..|..|.+||+-..+ ....+.+|.+.|..++.-+.-+.|+|++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 35678899999999999999999999999999999999996554 34567899999999999888899999999999999
Q ss_pred EECCCCe
Q 006229 624 WDTENVR 630 (655)
Q Consensus 624 WDl~tg~ 630 (655)
||.....
T Consensus 267 w~mn~~r 273 (404)
T KOG1409|consen 267 WNMNVKR 273 (404)
T ss_pred Eecccee
Confidence 9997543
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.60 E-value=0.00016 Score=88.83 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCC-------C--------------------CCCccccccccCCCceeeeEEeecCCC
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDA-------D--------------------PRDRVGRSAEVGKGFTFTEFQLIPAST 555 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~-------d--------------------~~d~~~~l~d~~~~~t~~~v~~l~gH~ 555 (655)
++..-+-.+|+-|+.|++|.+..+. . ..|....+|.+. .+.+...+.|.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk~~~s~qchn 2292 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PKPYTSWQCHN 2292 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----CcceeccccCC
Confidence 4445667899999999998655443 0 012222333333 24566677788
Q ss_pred CCeeEEEEcCCCCEEEEEe---CCCcEEEEeCCC--C-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLATGG---HDKKAVLWCTES--F-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs---~DgtVrIWDl~t--~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
....++.|-. .++++++ .++.|.+||..- + .++. +.|.+.++++++-|...+|+|||.+|.|+|||++..
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 8888888874 6778765 468899999742 2 3444 679999999999999999999999999999999987
Q ss_pred eEEEEEec
Q 006229 630 RKLTFICC 637 (655)
Q Consensus 630 ~~v~~l~~ 637 (655)
+.++++..
T Consensus 2369 ql~h~~~~ 2376 (2439)
T KOG1064|consen 2369 QLRHTFQA 2376 (2439)
T ss_pred HHHHHhhh
Confidence 76665543
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.57 E-value=0.0017 Score=73.02 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=53.6
Q ss_pred eeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeE
Q 006229 558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENVRK 631 (655)
Q Consensus 558 V~sl~fSpdG~lLaS-gs~Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~tg~~ 631 (655)
+.+..|+|||+.|+. .+.++. |.+||+.+++.. .+..|...+...+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 457899999997764 566665 777788877654 45556667788999999998876654 44 466678877764
Q ss_pred E
Q 006229 632 L 632 (655)
Q Consensus 632 v 632 (655)
.
T Consensus 343 ~ 343 (448)
T PRK04792 343 S 343 (448)
T ss_pred E
Confidence 3
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0013 Score=70.67 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=88.6
Q ss_pred CCCCcEEEeccCC--CcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCc
Q 006229 503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK 578 (655)
Q Consensus 503 ~~~~~~LasGS~D--~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~Dgt 578 (655)
.....++++|+.. ..+++|+...+. .+|.......-..--.. .--++++.|-+. ...||++..-+.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrV---PvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPNDRLGLRV---PVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred CCCCceEecCchhcccceeeeecccce-------eeeeccCCCCcccccee---eeeeccceecCCCCCceEEEEeccee
Confidence 3444678889888 788899655442 23322221110000000 012568888886 789999999999
Q ss_pred EEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 579 AVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 579 VrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
||+||++.+ +++..|.--+..|+++...|++++|++|-.-+.+..+|++.++.+..
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 999999876 56778877788999999999999999999999999999998876644
No 259
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00029 Score=79.43 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=78.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It-sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
...|.-+.|+|.-.+||++..+|.|.+..+. ...+-++.-|...|+ ++||.|||+.||.|=.||+|+|-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568889999999999999999999998887 677778876777777 99999999999999999999999999998776
Q ss_pred EEecccceeeeeceeeEEEec
Q 006229 634 FICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 634 ~l~~~~~~v~s~~Vss~~F~P 654 (655)
.+ ......+|+++.|.|
T Consensus 99 ~~----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF----LFSVETDISKGIWDR 115 (665)
T ss_pred cc----ccccccchheeeccc
Confidence 53 233445566777753
No 260
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00032 Score=47.33 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.8
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
..+..+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678899999999999999999999999999996
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.44 E-value=0.0045 Score=68.02 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=73.8
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC----cEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR 622 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg----tVr 622 (655)
++..+...-+.|.++..++||+.++.+.+...|.+.|++++.....=+...+.|+...|+|++++||=+=-+| .|+
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 4455556668899999999999999999889999999999987766666788999999999999999776665 599
Q ss_pred EEECCCCeEEEE
Q 006229 623 VWDTENVRKLTF 634 (655)
Q Consensus 623 VWDl~tg~~v~~ 634 (655)
|+|+.+++....
T Consensus 473 lydm~~~Kiy~v 484 (668)
T COG4946 473 LYDMDGGKIYDV 484 (668)
T ss_pred EEecCCCeEEEe
Confidence 999998776543
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=9.3e-05 Score=81.70 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=69.5
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-------t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
.+..+.||..+|..+.--.+.+-+++++.|++|++|.++ +..|-.++..|+..|.++.|-.+.++++|+ |+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678999999998877778899999999999999875 335777889999999999999998888876 89
Q ss_pred cEEEEECCCCe
Q 006229 620 TVRVWDTENVR 630 (655)
Q Consensus 620 tVrVWDl~tg~ 630 (655)
-|.+||.--++
T Consensus 805 giHlWDPFigr 815 (1034)
T KOG4190|consen 805 GIHLWDPFIGR 815 (1034)
T ss_pred cceeecccccc
Confidence 99999975443
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0029 Score=65.99 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=62.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~--tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg 629 (655)
...+++|++.+.-++++-.+|.+.+-+........ ++++|.-.++...|+. +.+.++|||.|+.+..||+|.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 35689999999999999999999977766666555 8899999999999986 4468999999999999999943
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00057 Score=75.70 Aligned_cols=117 Identities=16% Similarity=0.084 Sum_probs=79.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.-+.++|.|++|++|......|. ..+..+-.++..|+.+|.++.|-.|-+++++ .|+-|.+||.--
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFi 813 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFI 813 (1034)
T ss_pred cceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccc
Confidence 44568889999999954433221 1123466788999999999999988888765 489999999887
Q ss_pred CeEEEEec--ccCCCEEEEEEcCC--CC-EEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 587 FTVKSTLE--EHTQWITDVRFSPS--LS-RLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 587 ~~~l~tl~--gH~~~ItsVafsPd--g~-~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++.+..+. ...+.+..|..-++ .. .++-|+...+||++|.+.++-+..+..
T Consensus 814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 77766443 12223333333333 23 344457789999999998876665543
No 265
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00037 Score=76.48 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe---cccCC---CEEEEEEcCCCC-EEEEEeCCC
Q 006229 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WITDVRFSPSLS-RLATSSADR 619 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~~~l~tl---~gH~~---~ItsVafsPdg~-~LaSgS~Dg 619 (655)
...+..|.+.|.-++.-|+. +.|.|++.|+.|.-.|++......++ +.+.. ..++++..|... .+++++.|-
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 45666799999999999954 58999999999999999876543333 33444 578899999766 799999999
Q ss_pred cEEEEECCC
Q 006229 620 TVRVWDTEN 628 (655)
Q Consensus 620 tVrVWDl~t 628 (655)
.+||||.+.
T Consensus 305 f~RvYD~R~ 313 (559)
T KOG1334|consen 305 FARVYDQRR 313 (559)
T ss_pred hhhhhcccc
Confidence 999999985
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.36 E-value=0.0012 Score=70.07 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC------------CCCeeEEEEcCCCC--
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK-- 568 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH------------~~~V~sl~fSpdG~-- 568 (655)
...+.+|++|..+|.|.+|--..... + .+.....+..| ..+|..+.|.+++.
T Consensus 34 ~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 34 DHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred ecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 33445899999999999983322211 1 12222333333 34689999998655
Q ss_pred EEEEEeCCCcEEEEeCCCC-----------------------------------eEEEEe-cccCCCEEEEEEcCCCCEE
Q 006229 569 LLATGGHDKKAVLWCTESF-----------------------------------TVKSTL-EEHTQWITDVRFSPSLSRL 612 (655)
Q Consensus 569 lLaSgs~DgtVrIWDl~t~-----------------------------------~~l~tl-~gH~~~ItsVafsPdg~~L 612 (655)
.++....|++|++|-+... .+.+.+ .+|+--|++|.+..|...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 6777889999999965311 122223 3688899999999999988
Q ss_pred EEEeCCCcEEEEECCC-CeEEEE--EecccceeeeeceeeEEEec
Q 006229 613 ATSSADRTVRVWDTEN-VRKLTF--ICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 613 aSgS~DgtVrVWDl~t-g~~v~~--l~~~~~~v~s~~Vss~~F~P 654 (655)
+|+ .|-.|.||++.- ..+... +..+.-.-..-.|.+.-|||
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 886 688999999873 333333 23332222233466777776
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0011 Score=73.99 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=72.5
Q ss_pred CCCeeEEEEcCCCCEEEE--EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 006229 555 TSKVESCHFSPDGKLLAT--GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENV 629 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaS--gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~tg 629 (655)
.++|.++.|+++|+-+++ |-+=.+|.|+|++ +..+..| -++.-+++.|+|.|++|+.++.+ |.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 689999999999986655 4456789999986 3555555 45667889999999999999985 57999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++..+.+.... -|.|+||
T Consensus 347 K~i~~~~a~~tt-------~~eW~Pd 365 (566)
T KOG2315|consen 347 KLIAKFKAANTT-------VFEWSPD 365 (566)
T ss_pred hhccccccCCce-------EEEEcCC
Confidence 999888766543 4778775
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.31 E-value=0.004 Score=69.99 Aligned_cols=80 Identities=15% Similarity=0.046 Sum_probs=52.6
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeC-CCc--EE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSA-DRT--VR 622 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-Dg--tVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~-Dgt--Vr 622 (655)
.+..+...+..++|+|||++|+..+. ++ .|.++|+.+++.... +.++ .....+|+|||++|+..+. ++. |.
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 33445555678899999998776553 33 466668877765432 2332 3456799999999877665 443 55
Q ss_pred EEECCCCeE
Q 006229 623 VWDTENVRK 631 (655)
Q Consensus 623 VWDl~tg~~ 631 (655)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 578877754
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.00038 Score=76.35 Aligned_cols=80 Identities=18% Similarity=0.374 Sum_probs=69.9
Q ss_pred eecCCCC--CeeEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 550 LIPASTS--KVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 550 ~l~gH~~--~V~sl~f-SpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.++||.. .|.++-| -|...++++|+..|.|.|||-.+++.+..++|-...|+||.=+|--..|||++-|.-||||-.
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 3788864 4777765 457789999999999999999999999999988889999999999999999999999999987
Q ss_pred CCC
Q 006229 627 ENV 629 (655)
Q Consensus 627 ~tg 629 (655)
.+.
T Consensus 466 ~~~ 468 (559)
T KOG1334|consen 466 LTA 468 (559)
T ss_pred Ccc
Confidence 443
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.24 E-value=0.00045 Score=78.86 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=78.0
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWD 583 (655)
+-+.+++++.|..|..|+..... + .+-.+..-...-..|+|+- ++..|| .++.+-|+|||
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~----~--------------p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd 186 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPH----R--------------PFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWD 186 (1081)
T ss_pred CCcceeeccccccceeeeccCCC----c--------------ceeeeecccccCceeeecccCcchhh-hccCCceEEEe
Confidence 33678999999999999665541 1 2222222234456789987 555554 46678899999
Q ss_pred CCCC-eEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 006229 584 TESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~-~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~t 628 (655)
++.| ..+.++++|...|+.+.|.. ....+.+++.|++|+.||...
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 9855 67889999999999999975 345789999999999999874
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.20 E-value=0.013 Score=60.73 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=63.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-----tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl 626 (655)
-++.=.|..|+.....+|++..||++.|||++...... +-..|.+.|..+.|++-|. +|+-.-.=+.+.|-|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 34455689999999999999999999999998654322 2235899999999998664 4444445568999999
Q ss_pred CCCeEEEEEec
Q 006229 627 ENVRKLTFICC 637 (655)
Q Consensus 627 ~tg~~v~~l~~ 637 (655)
|+++....+..
T Consensus 282 R~~~~~q~I~i 292 (344)
T KOG4532|consen 282 RNYVNHQVIVI 292 (344)
T ss_pred ccCceeeEEec
Confidence 99876655543
No 272
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00075 Score=72.72 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=72.3
Q ss_pred eEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 624 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVW 624 (655)
....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++..++.++..| ..|++++|+-|.. +|..|-..|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3446678888999999999766 8999999999999999999999999888 8899999998765 57777789999999
Q ss_pred ECCCCe
Q 006229 625 DTENVR 630 (655)
Q Consensus 625 Dl~tg~ 630 (655)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 999654
No 273
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.13 E-value=0.00073 Score=47.30 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhcCCC
Q 006229 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (655)
Q Consensus 9 ~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~ 39 (655)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999998874
No 274
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.10 E-value=0.003 Score=66.73 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=61.7
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~D--gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
.-.|.-++||+|..+++|-... ..+-|||+...+....+. ....|....|+|....|+.+.....+++|......++
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 3457889999999999986543 578999998876654443 6778999999999999998888888999988765554
No 275
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.10 E-value=0.0025 Score=67.20 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEE
Q 006229 555 TSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaS-gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg~~v 632 (655)
-++|.-+.|..|.-++++ ...|+.|.+|++..-+-...+......+.+++|+|||+. |.+...|-+|.||.+.+.++.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999988775544 567889999999988888888888999999999999965 556778999999999988776
Q ss_pred EEEecccceeeeeceeeEEEecC
Q 006229 633 TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 633 ~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..--... .+-.++||||
T Consensus 128 ~~~~pK~------~~kg~~f~~d 144 (447)
T KOG4497|consen 128 LLPHPKT------NVKGYAFHPD 144 (447)
T ss_pred Eeccccc------CceeEEECCC
Confidence 4322221 1235677765
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.10 E-value=0.0017 Score=66.68 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=52.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
..+.+|+.|+.|.+|+..... ..+..++.|+.+|.-|.|+| ++..|+++++||.+.-||..
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVA------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cEEEEecCCCeEEEEEccccc------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 668899999999999665441 35567789999999999999 78899999999999999976
Q ss_pred C
Q 006229 586 S 586 (655)
Q Consensus 586 t 586 (655)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
No 277
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.06 E-value=0.0016 Score=68.95 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=81.7
Q ss_pred CcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 006229 499 PNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (655)
Q Consensus 499 s~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg 577 (655)
+..|.++. ..++-.|..|+|++++..... ..+...++++..... .....+..--+.|..|.|+++|+++++-.. -
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~a-LCd~hsKlfEepedp--~~rsffseiIsSISDvKFs~sGryilsRDy-l 293 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSA-LCDAHSKLFEEPEDP--SSRSFFSEIISSISDVKFSHSGRYILSRDY-L 293 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhh-hhcchhhhhccccCC--cchhhHHHHhhhhhceEEccCCcEEEEecc-c
Confidence 33444443 234555677999999776542 222222333222111 111122233467899999999999998754 7
Q ss_pred cEEEEeC-CCCeEEEEecccC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 578 KAVLWCT-ESFTVKSTLEEHT------------QWI---TDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 578 tVrIWDl-~t~~~l~tl~gH~------------~~I---tsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+|+|||+ ...+.+.++.-|. +.| .-++|+-++.+++|||....++|+++..|
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 8999999 3455666665553 223 45889989999999999999999996644
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.02 E-value=0.01 Score=73.57 Aligned_cols=74 Identities=8% Similarity=0.045 Sum_probs=60.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-------------gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
-..|+|+++|.++++-..+++|++||..++....... ++-.....|+++++|+.+++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 3588999999999999999999999998876653321 122357789999999999999999999999
Q ss_pred ECCCCeE
Q 006229 625 DTENVRK 631 (655)
Q Consensus 625 Dl~tg~~ 631 (655)
|+++++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9998764
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.0011 Score=70.15 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-----~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~ 627 (655)
.++.|.++.|...+.++..|+..|.|.+.|++.. .+...+. |...|+|+..-- ++.+|++.+.||+|++||+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567999999998999999999999999999864 4554443 999999998765 78899999999999999999
Q ss_pred CCeE---EEEEecccc
Q 006229 628 NVRK---LTFICCYKC 640 (655)
Q Consensus 628 tg~~---v~~l~~~~~ 640 (655)
--+| |..+.+|..
T Consensus 330 ~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVN 345 (425)
T ss_pred hhhcccceeeeecccc
Confidence 8777 888888764
No 280
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.93 E-value=0.0061 Score=66.90 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=57.3
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 568 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 568 ~lL-aSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++ ++-..++.|.|.|..+.+.+.++......-..++|+|||+++++++.|+.|.++|+.+++.+.++..+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 344 4556789999999999999999986555455688999999999999999999999999999988876554
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.84 E-value=0.0031 Score=66.17 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeccc
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYK 639 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~ 639 (655)
...|.++.|+++|++|++-+.- +|+|||++. ..|+.++..|.
T Consensus 280 vsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 280 VSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence 3568899999999999987654 899999984 45677765443
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.007 Score=69.86 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=78.2
Q ss_pred eeeEEeecCCCCCeeEEEEcCC------C------CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC---CC
Q 006229 545 FTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL 609 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpd------G------~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP---dg 609 (655)
...+..+.-|...|+.|.|.|- + -+||++...|.|-|||...+..+..+..|.+.|-+++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 3567778889999999999862 1 2678888889999999999999999999999999999976 34
Q ss_pred -CEEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 610 -SRLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 610 -~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
.+|+.-..-.+|-+|+..+|+.+-........
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 45666666779999999999988666555443
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.81 E-value=0.0035 Score=73.41 Aligned_cols=76 Identities=25% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 625 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---------DgtVrVWD 625 (655)
.++|.-++. ++++|.+|...|+|.+-|.++.+.++++..|++.|.++.. .|+.|+|||. |..|+|||
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 334554544 5899999999999999999999999999999999987765 4899999986 66799999
Q ss_pred CCCCeEEEE
Q 006229 626 TENVRKLTF 634 (655)
Q Consensus 626 l~tg~~v~~ 634 (655)
+|..+.+.-
T Consensus 253 LRmmral~P 261 (1118)
T KOG1275|consen 253 LRMMRALSP 261 (1118)
T ss_pred hhhhhccCC
Confidence 997655443
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.81 E-value=0.056 Score=58.96 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccc-------CCCEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 006229 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSS-A-DRTVRV 623 (655)
Q Consensus 563 fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH-------~~~ItsVafsPdg~~LaSgS-~-DgtVrV 623 (655)
+||||+.|+.+.. +..|.|||+.+++.+..+.-- ...-..++++|||++|+..- . |..|-|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877766 789999999999999888631 22344788999999999776 3 788999
Q ss_pred EECCCCeEEEEEeccc
Q 006229 624 WDTENVRKLTFICCYK 639 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~ 639 (655)
.|+.+++.+..+....
T Consensus 133 vD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD 148 (352)
T ss_pred EECCCCcEEEEEeCCC
Confidence 9999999888776544
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.022 Score=66.33 Aligned_cols=139 Identities=20% Similarity=0.153 Sum_probs=88.3
Q ss_pred ccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC
Q 006229 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (655)
Q Consensus 476 ~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~ 555 (655)
.-+...+.+.++...+...........+..+.++++||.||+|.+.-.-++ ++...+ ...
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~-------------------~~~~~~-df~ 112 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTD-------------------DEITQY-DFK 112 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCC-------------------ccceeE-ecC
Confidence 334445555555555431111111111445689999999999988733222 111111 224
Q ss_pred CCeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 556 SKVESCHFSPD-----GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpd-----G~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.++.+|+++|| .+.+++||.-| +.++.-.-. +.-..+..-.+.|.+|+|. |.+||=++.+| |+|||+.+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccc
Confidence 57889999997 66899999888 777654321 1111455677899999997 88999988775 69999998
Q ss_pred CeEEEEEecc
Q 006229 629 VRKLTFICCY 638 (655)
Q Consensus 629 g~~v~~l~~~ 638 (655)
+..+..+...
T Consensus 189 ~~~l~~i~~p 198 (846)
T KOG2066|consen 189 RQRLTNIPPP 198 (846)
T ss_pred cceeeccCCC
Confidence 8777665543
No 286
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.74 E-value=0.082 Score=57.24 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=54.0
Q ss_pred CeeEEEEcCCCCEEEEEe-CCCcEEEEeCC--CC--eEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CC
Q 006229 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTE--SF--TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT--EN 628 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs-~DgtVrIWDl~--t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl--~t 628 (655)
....|+++|||++|+++. .+.+|.+|+++ ++ +.+..+......-+.+.|+|+|++|+.+. .++.|.+|++ ++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 577899999999877765 46789999983 33 33334433344578999999999999887 4668999976 46
Q ss_pred CeEE
Q 006229 629 VRKL 632 (655)
Q Consensus 629 g~~v 632 (655)
|...
T Consensus 326 G~l~ 329 (345)
T PF10282_consen 326 GKLT 329 (345)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 6543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.73 E-value=0.053 Score=67.29 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecc-------------c--------CCCEEEEEEcCCCCEEEE
Q 006229 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-------------H--------TQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 557 ~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~g-------------H--------~~~ItsVafsPdg~~LaS 614 (655)
....|+|+|+|. ++++-+.++.|++||+.++.......+ + -..-..|+|+++|..+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 356799999998 555666779999999987653211100 0 112358899999999999
Q ss_pred EeCCCcEEEEECCCCeEEEE
Q 006229 615 SSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 615 gS~DgtVrVWDl~tg~~v~~ 634 (655)
-+.+++|++||..++.....
T Consensus 821 Ds~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEE
Confidence 99999999999988766543
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.69 E-value=0.06 Score=56.21 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=60.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeE---------------------EE--E---e---
Q 006229 554 STSKVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV---------------------KS--T---L--- 593 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~Dg-----------tVrIWDl~t~~~---------------------l~--t---l--- 593 (655)
+...|.++.|+|..++|+.||... -+..|.+-++.+ .+ . +
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 466899999999989888876521 255664422110 00 1 0
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..-.+.|..+.++|||..||+...+|.|.||++-+.+....+.-
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11356799999999999999999999999999988777665543
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.68 E-value=0.054 Score=61.41 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=59.8
Q ss_pred eeEEEEcC-CCCEEEEE----eCCCcE----EEEeCCCCeE--EEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 558 VESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTV--KST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSp-dG~lLaSg----s~DgtV----rIWDl~t~~~--l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..++.||- +...+.|. +.++.+ ++|++...+. +.. --.+...|.|++++|+.+.|+.|+.||+|++||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46788887 45555553 334432 3555543322 211 125788999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
...+....+ . .......++|||+
T Consensus 288 ~~~~~t~~~-k------a~~~P~~iaWHp~ 310 (545)
T PF11768_consen 288 TTRGVTLLA-K------AEFIPTLIAWHPD 310 (545)
T ss_pred cCCCeeeee-e------ecccceEEEEcCC
Confidence 987633321 1 1233567888885
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.01 Score=66.46 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeccc--CCCE-EEEEEcCCCCEEEEEeCCC
Q 006229 554 STSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-----------DgtVrIWDl~t~~~l~tl~gH--~~~I-tsVafsPdg~~LaSgS~Dg 619 (655)
|. .|.-++|||..+||+|-+. ...|+|||+.+|...++|..- ...+ .-++||.|++++|-...|
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 54 4889999999999999653 257899999999998888642 2222 246899999999988876
Q ss_pred cEEEEECCCC
Q 006229 620 TVRVWDTENV 629 (655)
Q Consensus 620 tVrVWDl~tg 629 (655)
+|.|++..+.
T Consensus 327 sisIyEtpsf 336 (698)
T KOG2314|consen 327 SISIYETPSF 336 (698)
T ss_pred eEEEEecCce
Confidence 7889987753
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=0.014 Score=66.92 Aligned_cols=118 Identities=10% Similarity=0.151 Sum_probs=85.8
Q ss_pred cEEEeccCCCcEEEEecCCCC-CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~-d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
.|+++|+.||-+++.-..... +.... .+....+...-.++.||++.|.-+.|+.....|.|...+|.|.||-+-
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~-----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKS-----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CeEEeccccceeEEEEccccCCccccc-----ccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 599999999999998433221 11111 011222334456788999999999999888899999999999999876
Q ss_pred CCeEEEEe--cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 586 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 586 t~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
.+.-...+ ....+.|.+++|..||..|...-.||.|.|=.++..
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 55322111 235678999999999999999999999877766643
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.58 E-value=0.013 Score=63.27 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+..++|+.+-.++...+++...... ..+++ .+..+......|+.+..+........++.+..+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~---------~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK----GAKLL---------DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC----cceee---------eEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 34446777776666655554333211 11111 122222223344445544444444445666778888
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-ccceeee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC-YKCIFVS 644 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~-~~~~v~s 644 (655)
....+++. .+-||-..+++|+|+||+++|+|+..|..|||=.......+..|.- |...|..
T Consensus 138 s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 138 SADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred cccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 87775555 4568999999999999999999999999999987776555555543 5554443
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.54 E-value=0.094 Score=58.62 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=52.5
Q ss_pred CCCCeeEEEEcCCCCEEEE-EeCC--CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaS-gs~D--gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~ 627 (655)
..+.+.+..|+|||+.|+. .+.+ ..|.++|+.++... .+..+........|+|||+.|+-.+. .+ .|.++|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3455667889999986554 4334 45777788877644 45444444456789999987776663 33 48888888
Q ss_pred CCeEE
Q 006229 628 NVRKL 632 (655)
Q Consensus 628 tg~~v 632 (655)
+++..
T Consensus 310 ~g~~~ 314 (419)
T PRK04043 310 SGSVE 314 (419)
T ss_pred CCCeE
Confidence 77653
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.42 E-value=0.017 Score=68.00 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=78.2
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-----
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----- 575 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~----- 575 (655)
.+.-.++++.+|...|+|.+-+. .+++.+.++.+|++.|.+++.. |++|+++|.
T Consensus 182 imR~Nnr~lf~G~t~G~V~LrD~-------------------~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~ 240 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVFLRDP-------------------NSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRY 240 (1118)
T ss_pred EEEecCcEEEeecccceEEeecC-------------------CcCceeeeeeccccceeeeecc--CCeEEEeecccccc
Confidence 34555678888888777766532 3457889999999999887764 999999886
Q ss_pred ----CCcEEEEeCCCCeEEE------------------------------------Eeccc----------CCCEEEEEE
Q 006229 576 ----DKKAVLWCTESFTVKS------------------------------------TLEEH----------TQWITDVRF 605 (655)
Q Consensus 576 ----DgtVrIWDl~t~~~l~------------------------------------tl~gH----------~~~ItsVaf 605 (655)
|..|+|||++..+.+. ++..| ...|..+++
T Consensus 241 ~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 241 NLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred cccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence 6678999987542210 01111 234888999
Q ss_pred cCCCCEEEEEeCCCcEEEEECC
Q 006229 606 SPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 606 sPdg~~LaSgS~DgtVrVWDl~ 627 (655)
++++..++.|-.+|.|.+|--+
T Consensus 321 Ssn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cCCCceEEEecccCcEeeecCC
Confidence 9999999999999999999743
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.0036 Score=72.96 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=78.6
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR 622 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg--tVr 622 (655)
|+..+.++.|+...+||+|+-+.+.|+.|+..|.|+++++.+|........|...|+.|.=+-+|..++|.+.-. ..-
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 456778888999999999999999999999999999999999999999999999999999888998877666533 478
Q ss_pred EEECC-CCeEEEEEec
Q 006229 623 VWDTE-NVRKLTFICC 637 (655)
Q Consensus 623 VWDl~-tg~~v~~l~~ 637 (655)
+|++. ++...++|..
T Consensus 1171 LW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE 1186 (1516)
T ss_pred HhccccccCccccccc
Confidence 99986 3455555543
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.26 E-value=0.0071 Score=69.46 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=75.0
Q ss_pred eeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.....+.+|+.+|+.+-|++.. ..|++++.|..|..||+++- ..+..+..-...-+-|+|+.-...+...+....|+|
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3445678999999999999954 49999999999999999875 345555544556678999986555666667778999
Q ss_pred EECCCCe-EEEEEecccceeeeec
Q 006229 624 WDTENVR-KLTFICCYKCIFVSTA 646 (655)
Q Consensus 624 WDl~tg~-~v~~l~~~~~~v~s~~ 646 (655)
||++.|. .+.++.+|...+....
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred EeccCCCcceEEecccceeeehHH
Confidence 9998664 4566766555444443
No 297
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.0075 Score=70.11 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=64.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
++++||+|..-.|++|=.-|.+.||...+.+.......|+..|.-|.||++|..|+|+..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999899999888999999998877777777899999999999999999999999999999776
No 298
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.015 Score=66.05 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=64.6
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee-
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE- 559 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~- 559 (655)
....+.|+|... ++|.+..++.|-+.... +..+-++.-|...|+
T Consensus 22 ~i~~~ewnP~~d---------------LiA~~t~~gelli~R~n--------------------~qRlwtip~p~~~v~~ 66 (665)
T KOG4640|consen 22 NIKRIEWNPKMD---------------LIATRTEKGELLIHRLN--------------------WQRLWTIPIPGENVTA 66 (665)
T ss_pred ceEEEEEcCccc---------------hhheeccCCcEEEEEec--------------------cceeEeccCCCCccce
Confidence 446677887543 56777677766665222 123334444555566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcC
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP 607 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsP 607 (655)
+++|.|||++||.|-.||+|+|.|++++..+..+ ..-...|+++-|++
T Consensus 67 sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 67 SLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999999999999998877663 23556788888863
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.22 E-value=0.12 Score=57.68 Aligned_cols=87 Identities=11% Similarity=-0.031 Sum_probs=55.2
Q ss_pred eeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 006229 558 VESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSAD---------RTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~-Dg--tVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~D---------gtVrVW 624 (655)
.....|+|||+.|+-.+. .+ .|.++|+.+++...... +. ....|+|||++|+-.+.. ..|.+.
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 345689999996666553 33 57788888887644332 22 124899999988777653 257788
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+.++.. ..+.... ......|+||
T Consensus 355 d~~~g~~-~~LT~~~------~~~~p~~SPD 378 (419)
T PRK04043 355 STNSDYI-RRLTANG------VNQFPRFSSD 378 (419)
T ss_pred ECCCCCe-EECCCCC------CcCCeEECCC
Confidence 8887753 3444321 1224667775
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.17 E-value=0.013 Score=61.57 Aligned_cols=139 Identities=17% Similarity=0.254 Sum_probs=85.1
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC------------CCCeeEEEEcCCCC
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK 568 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH------------~~~V~sl~fSpdG~ 568 (655)
.++..+.+|++|-..|.|.+|.-.... +...+.+..+.+| ..+|..|.|..++.
T Consensus 33 efd~tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 33 EFDETGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred EeccccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 344455689999878899888332221 1111222233333 24688888877443
Q ss_pred --EEEEEeCCCcEEEEeCCCC-------------------------------------e-----EEEEe-cccCCCEEEE
Q 006229 569 --LLATGGHDKKAVLWCTESF-------------------------------------T-----VKSTL-EEHTQWITDV 603 (655)
Q Consensus 569 --lLaSgs~DgtVrIWDl~t~-------------------------------------~-----~l~tl-~gH~~~ItsV 603 (655)
.++..+.|++|++|-+... + +.+.. ..|..-|+++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 5666778999999965311 0 01112 4588889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCe-E--EEEEecccceeeeeceeeEEEec
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTENVR-K--LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~tg~-~--v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.|..|-..++|+ .|-+|.+|++.-.. + +..+..|.-.-....|.+..|||
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp 231 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP 231 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH
Confidence 999988888775 67899999987432 2 22334443333334466777777
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.14 E-value=0.19 Score=54.95 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEE
Q 006229 557 KVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVW 624 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVW 624 (655)
.+.-++++++++.|+...+ .+.|.++|+.+++.+..+. -...+..|+|+||++ +|++.. .++.|.|.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 3445999999998887432 2579999999999998886 244899999999999 888666 68899999
Q ss_pred ECCCCeEEEEE
Q 006229 625 DTENVRKLTFI 635 (655)
Q Consensus 625 Dl~tg~~v~~l 635 (655)
|+.+++.+..+
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 99999999888
No 302
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.10 E-value=0.28 Score=53.07 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=58.8
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeEEEE---ec--c--------cCCCEEEEEEcCCC
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST---LE--E--------HTQWITDVRFSPSL 609 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t-~~~l~t---l~--g--------H~~~ItsVafsPdg 609 (655)
+..+.........-..|+++|++++|+++.. +++|.++++.. ++.... +. + -.....++.|+|++
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 3445444433445568999999999999875 89999999976 443332 21 1 12457899999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCe
Q 006229 610 SRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 610 ~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
++|+.+.. ...|++|++....
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS
T ss_pred CEEEEEecCCCEEEEEEEeCCC
Confidence 99888754 3379999997654
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0057 Score=66.88 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIW 582 (655)
....++.++|.|+.++.|-... .....-+..++.|.+.|.+++.+-||.+++|.+. |+.+|++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 3457999999999999992111 1123455677788899999999999999999888 9999998
Q ss_pred eCCCCeEE------------------------------------------------EEecccCCCEEEEEEcCCCCEEEE
Q 006229 583 CTESFTVK------------------------------------------------STLEEHTQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 583 Dl~t~~~l------------------------------------------------~tl~gH~~~ItsVafsPdg~~LaS 614 (655)
|+++...+ ..-.-|..+|.++.+.+.+..++|
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 86532110 000127888999999999999999
Q ss_pred EeCCCcEEEEECC
Q 006229 615 SSADRTVRVWDTE 627 (655)
Q Consensus 615 gS~DgtVrVWDl~ 627 (655)
....|.|.-|...
T Consensus 162 iD~~gmVEyWs~e 174 (558)
T KOG0882|consen 162 IDISGMVEYWSAE 174 (558)
T ss_pred ccccceeEeecCC
Confidence 9888999999887
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.96 E-value=0.097 Score=57.92 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=78.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dg-tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
+|...|.-..+..+++-++.|..|+ .|-|+|.++++.. .+.+.-+.|.+|..+++|++++.+-....|-+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 5777899999999999999999999 8999999988765 5566788999999999999999998888899999998864
Q ss_pred EEEEecccceeeeeceeeEEEecC
Q 006229 632 LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 632 v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
-..=... -..|...+|||+
T Consensus 436 ~~idkS~-----~~lItdf~~~~n 454 (668)
T COG4946 436 RLIDKSE-----YGLITDFDWHPN 454 (668)
T ss_pred eEecccc-----cceeEEEEEcCC
Confidence 4322221 233567888875
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=0.012 Score=68.08 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=69.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS------------LSRLATSSADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd------------g~~LaSgS~DgtVrVWD 625 (655)
-.+++|+|.| +||-|++ ..|.|-|..+.+.+.+++-|...|+.|+|.|. .-+||++...|.|.|||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5689999877 7788776 56788899999999999999999999999872 12577777889999999
Q ss_pred CCCCeEEEEEeccccee
Q 006229 626 TENVRKLTFICCYKCIF 642 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v 642 (655)
...+..+..+..+...+
T Consensus 96 ~~~~s~~~~l~~~~~~~ 112 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSV 112 (1062)
T ss_pred ehhhhhhhhhcCCCcch
Confidence 99988888887776544
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.019 Score=62.90 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=70.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEE---------EEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVK---------STLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t------~~~l---------~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.-|..+|.++.+++-+..+++....|.|..|..+. .+.. ..+.-.....+++.|+|++..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 35889999999999999999999999999998762 1111 11222456788999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecc
Q 006229 617 ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.|.+||++++++|+.+..+...
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccEEEEEEeccchhhhhhhcc
Confidence 9999999999999988776543
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.87 E-value=0.026 Score=64.83 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=79.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.++..+++++.|+.-|.|.+|....+. . ......+-.+.+..+..|++..++|.|+..+.|.
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~---------~---------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE---------M---------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh---------h---------hcccccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 345556899999999999888554441 0 0011111334566777888888999999999999
Q ss_pred EEeCCCC-----eEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 581 LWCTESF-----TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 581 IWDl~t~-----~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|+-+... ..+..+ ..|...|+|++|++++..|++|..-|+|.+-.+.+
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9876542 122222 24889999999999999999999999998888776
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.87 E-value=0.11 Score=57.84 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=63.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECC
Q 006229 553 ASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrVWDl~ 627 (655)
+-.++|..++|.|+++.+++. -++-++.++|++.. ....+ -...=+.+.|+|.+++++.++.|. .|-+||..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 557889999999988866654 47899999999875 44333 344456678999999999999875 59999987
Q ss_pred CCe-EEEEEecccc
Q 006229 628 NVR-KLTFICCYKC 640 (655)
Q Consensus 628 tg~-~v~~l~~~~~ 640 (655)
+.. |+..+.+...
T Consensus 349 ~rf~~~~~~~~~n~ 362 (561)
T COG5354 349 GRFKVAGAFNGLNT 362 (561)
T ss_pred CceEEEEEeecCCc
Confidence 654 4446655443
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.046 Score=63.70 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
++++++-|..+|.|+++..... . .+...|+.. .-+|.+++||+.||+|.|--+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 4478999999999998843221 1 122233332 558999999999999999998
Q ss_pred CCCeEEEEecccCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEE
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWD 625 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPd-----g~~LaSgS~DgtVrVWD 625 (655)
.+.+..+++. -...|.+|+++|+ .+.+++|+.-| +.++.
T Consensus 101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 8887776665 5678999999997 67899999988 66664
No 310
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.64 E-value=0.03 Score=56.90 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=74.0
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEE-cCCCCEEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~f-SpdG~lLaSgs~DgtVrIWD 583 (655)
.++-+.+|+.|+.|.+|++.--....+++ ..-...|.|..- --++.+.++++.|+.||.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV------------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhh------------------hcccccceeccccccccceeEEeccCCceeeec
Confidence 34678899999999999665221100000 000122222221 12566899999999999999
Q ss_pred CCCCeEEEEecccC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 006229 584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSg--S~DgtVrVWDl~t 628 (655)
+.-.+.+...-.|+ ..+........+++|+++ |.|..++.|++..
T Consensus 131 ~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 131 IKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99999888888888 677777777778888888 8899999998864
No 311
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=0.018 Score=66.13 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=63.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~---------------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+..|+.|+....++++||.||.++|.-+.+- ..-.+++||...|..|.|..+...|.|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 45789999999999999999999999866432 223478899999999999999999999999999
Q ss_pred EEEEECCCC
Q 006229 621 VRVWDTENV 629 (655)
Q Consensus 621 VrVWDl~tg 629 (655)
|.||-+-.|
T Consensus 95 IiVWmlykg 103 (1189)
T KOG2041|consen 95 IIVWMLYKG 103 (1189)
T ss_pred EEEEeeecc
Confidence 999977554
No 312
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.37 Score=51.85 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeEEE--EecccCCC----------EEEEEEcCCCCEEEEEeC--CCcE
Q 006229 558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSA--DRTV 621 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t-~~~l~--tl~gH~~~----------ItsVafsPdg~~LaSgS~--DgtV 621 (655)
-+.|+++++|++|+++.+ -+.|.++-+.. |.+.. .+..|.+. +.+..|.|++++|+++.- | +|
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri 169 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RI 169 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eE
Confidence 378999999999999876 47899998854 43322 22346666 899999999999999874 5 78
Q ss_pred EEEECCCCeEE
Q 006229 622 RVWDTENVRKL 632 (655)
Q Consensus 622 rVWDl~tg~~v 632 (655)
.+|++..|...
T Consensus 170 ~~y~~~dg~L~ 180 (346)
T COG2706 170 FLYDLDDGKLT 180 (346)
T ss_pred EEEEcccCccc
Confidence 99999976543
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.20 E-value=0.33 Score=52.76 Aligned_cols=72 Identities=13% Similarity=-0.072 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++..++.++.|+.|..+|..+++.+-....... .+.+... .+.+|++++.||.|++||..+++.+..+..+.
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 456778888999999999999987755432222 2222222 46799999999999999999999988877554
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.02 E-value=3 Score=42.47 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=46.4
Q ss_pred eeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----cCCCEEEEEEcCCCCEEEEEeCC--------CcEEE
Q 006229 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (655)
Q Consensus 558 V~sl~fS-pdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-----H~~~ItsVafsPdg~~LaSgS~D--------gtVrV 623 (655)
...+++. ++++++++ ..++ +.++|..+++....+.. .....++++++|+|++.+|.+.. |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 67655544 4444 45559998865544432 34568999999999988887754 45777
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
++.. ++..
T Consensus 120 ~~~~-~~~~ 127 (246)
T PF08450_consen 120 IDPD-GKVT 127 (246)
T ss_dssp EETT-SEEE
T ss_pred ECCC-CeEE
Confidence 7777 4433
No 315
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.90 E-value=0.025 Score=66.53 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=50.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC-----CCCeEEEEecccC-CCEEEEEEcCC---------CCEEEEEeC-CCcEEEEEC
Q 006229 563 FSPDGKLLATGGHDKKAVLWCT-----ESFTVKSTLEEHT-QWITDVRFSPS---------LSRLATSSA-DRTVRVWDT 626 (655)
Q Consensus 563 fSpdG~lLaSgs~DgtVrIWDl-----~t~~~l~tl~gH~-~~ItsVafsPd---------g~~LaSgS~-DgtVrVWDl 626 (655)
+||||+.|+.++.||.|++|.+ ..-+|++.++.|+ ..-.|.-|+.. ..+++++++ ...+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 6899999999999999999965 3446788888887 33323223321 235666665 445999998
Q ss_pred CCCeEE
Q 006229 627 ENVRKL 632 (655)
Q Consensus 627 ~tg~~v 632 (655)
...+|+
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 888887
No 316
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.87 E-value=0.28 Score=44.77 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=45.3
Q ss_pred eeEEEEc---CCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFS---PDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fS---pdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
|+++++. -||. .|+.|+.|..||||+=+ +.+..+.. ++.|++++-... ..++-+..+|+|-||+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4455544 4554 89999999999999854 56667764 456777765554 66887888888766653
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.82 E-value=0.48 Score=49.31 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=62.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|..++.|+..+.+.+.++.+|..+-.+..-...=..-...+++..|..|+.|++.+.-|.++..|+....|+...+.+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 6679999999999999999997766665333222223357889999999999999999999999999888877655443
No 318
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.66 E-value=0.087 Score=40.64 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
...|.+++|||...+||.++.||.|.|+.+ ++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5544
No 319
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.51 E-value=0.47 Score=58.25 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC--CC-cEEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DR-TVRVW 624 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~---D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~--Dg-tVrVW 624 (655)
+.+.-..|+|-.||.+||+.+. + +.+|||+.+ |....+-+.-.+.-.+++|.|.|.+||+.-. |. .|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4445678999999999999875 2 579999976 7777776666666778999999999999875 32 34444
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. ++|-....|.-... -....|..+.|++|
T Consensus 287 E-rNGLrhgeF~l~~~-~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 287 E-RNGLRHGEFTLRFD-PEEEKVIELAWNSD 315 (928)
T ss_pred e-cCCcEeeeEecCCC-CCCceeeEEEECCC
Confidence 3 56655555544321 11233567888765
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.41 E-value=1.1 Score=47.19 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------cCCCEEEEEEcCCC------CEEEEEeCCCcEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSL------SRLATSSADRTVR 622 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-------H~~~ItsVafsPdg------~~LaSgS~DgtVr 622 (655)
..-+.++||||+.+||.+...|+|+|+|+....+ ..+.. -...|..+.|.+.. -.|+.-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3467899999999999999999999999975433 33332 23567777776532 2466666777777
Q ss_pred EEECC
Q 006229 623 VWDTE 627 (655)
Q Consensus 623 VWDl~ 627 (655)
=+-+.
T Consensus 123 Sy~vs 127 (282)
T PF15492_consen 123 SYLVS 127 (282)
T ss_pred eEEEE
Confidence 77653
No 321
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.39 E-value=0.86 Score=49.52 Aligned_cols=107 Identities=12% Similarity=-0.003 Sum_probs=67.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+..++.++.|..++..+++ .+|...... ........ ++..++.++.|+.|..||.++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~~------------~~~~~p~v--~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGK-------RLWRVDLDE------------RLSGGVGA--DGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred CEEEEECCCCeEEEEEccCCc-------EeeeecCCC------------CcccceEE--cCCEEEEEcCCCEEEEEECCC
Confidence 466677778888888766553 122211110 00011222 466788889999999999999
Q ss_pred CeEEEEecccCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 587 FTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 587 ~~~l~tl~gH~~~Its-VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
|+.+-...-. ..+.+ ..+ .+..++.++.|+.|..||+++|+.+-.+..
T Consensus 125 G~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 125 GKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 9887655422 22221 111 355777788899999999999987765543
No 322
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.33 E-value=0.95 Score=46.13 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=62.7
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCCcEEEEeCC--CC-----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTE--SF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl~--t~-----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
...+.|+|+||++.|+ +-+..+.|..+|+. +. +....+.+-.+..-.++++.+|++.++.-..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 3467899999999665 55677888888885 22 1122222223347789999999988888889999999988
Q ss_pred CCeEEEEEecccceeeeeceeeEEE
Q 006229 628 NVRKLTFICCYKCIFVSTAIGSCFF 652 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~s~~Vss~~F 652 (655)
|+.+..+...... +++|+|
T Consensus 214 -G~~~~~i~~p~~~-----~t~~~f 232 (246)
T PF08450_consen 214 -GKLLREIELPVPR-----PTNCAF 232 (246)
T ss_dssp -SCEEEEEE-SSSS-----EEEEEE
T ss_pred -ccEEEEEcCCCCC-----EEEEEE
Confidence 8888877766332 345666
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=0.017 Score=67.63 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=81.3
Q ss_pred cCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 006229 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (655)
Q Consensus 498 ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg 577 (655)
+...|...+++|+.|+..|.|+++++.+| .....+..|.++|+-|.=+.||..+++.+.-.
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG-------------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCc-------------------cccccccccccccccccccCCcceeeeecccc
Confidence 33456677788999999999999977666 33455678999999999888999776655433
Q ss_pred --cEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 578 --KAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 578 --tVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
-.-+|++. ++...++|. ...+|.|+-....-+.|+.-..+.|||+.++..+.+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred CchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 46699985 345555655 456788886544434444445789999999877665
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.30 E-value=0.12 Score=59.73 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=82.4
Q ss_pred ceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+..++..+.+.+|+..+. .........+.+.+.++|.|+..+.|.++...........++.
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t-------- 117 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT-------- 117 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec--------
Confidence 44555666777777777652 1122334456777788888888888888744443111111111
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
..-+.|...|+||+|++|+..|++|..-|+|.+--+++. .....+..-...|.-|... ++.+|++...
T Consensus 118 -----~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-- 189 (726)
T KOG3621|consen 118 -----PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-- 189 (726)
T ss_pred -----cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--
Confidence 111238889999999999999999999999998877661 1112222345556555543 3334443332
Q ss_pred cEEEEECC
Q 006229 620 TVRVWDTE 627 (655)
Q Consensus 620 tVrVWDl~ 627 (655)
...|++++
T Consensus 190 r~~Lc~tE 197 (726)
T KOG3621|consen 190 RCILCQTE 197 (726)
T ss_pred hhheeecc
Confidence 23445544
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.19 E-value=0.78 Score=45.82 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~---~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++..++.++.|+.|+.+|..+|+.+-.+ .... ..........++..++.+..++.|..+|+++|+.+-.+....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 3556677778889999999999988774 3221 122223333348889999999999999999999987776644
No 326
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=0.11 Score=62.34 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=55.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEE---EEcCCCCEEEEEeCCCcEEEEEC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV---RFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsV---afsPdg~~LaSgS~DgtVrVWDl 626 (655)
.++|+|++|+.||++++.|-.+|.|.+||+..++.++.+..|..+++.| .+..++..++|+..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4789999999999999999999999999999999999888776654443 34445567777766665 6654
No 327
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.96 E-value=0.21 Score=55.74 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCc---------------EEEEeCCCCeEEEEecccCCC--EE-EEEEcCCCCEEEEEeC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKK---------------AVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 617 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~Dgt---------------VrIWDl~t~~~l~tl~gH~~~--It-sVafsPdg~~LaSgS~ 617 (655)
..|..++|||.+++|.|=+.... +.|||+.++..+..+.+-... .+ -+.|+-+..++|=..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 45899999999999999765444 999999999999999877766 66 788999888877663
Q ss_pred CCcEEEEEC
Q 006229 618 DRTVRVWDT 626 (655)
Q Consensus 618 DgtVrVWDl 626 (655)
...++|+++
T Consensus 151 ~~sl~i~e~ 159 (561)
T COG5354 151 GSSLYIHEI 159 (561)
T ss_pred cCeEEEEec
Confidence 337899996
No 328
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=2.4 Score=45.88 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=54.9
Q ss_pred eeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 558 VESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~D-gtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
+-+..|.|++++|++...- -.|.+|+++.+++...-. .-...-+.|.|+|++++....++ +++|-+|.....
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 7789999999999887642 357899998775432211 22344678999999999888886 999999999863
No 329
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=93.51 E-value=0.1 Score=63.96 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.9
Q ss_pred HHhhcCC
Q 006229 301 AQQNLAS 307 (655)
Q Consensus 301 ~~~~~~~ 307 (655)
.|..|.+
T Consensus 2198 lQ~qLs~ 2204 (2220)
T KOG3598|consen 2198 LQMQLSA 2204 (2220)
T ss_pred HHHHhhh
Confidence 4444433
No 330
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.46 E-value=0.76 Score=51.33 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=71.1
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-EEEE-cCCC------------
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRF-SPSL------------ 609 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It-sVaf-sPdg------------ 609 (655)
.......+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=. -+.. ....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 3445566777778899999999999999987779999999999999999988765421 1111 1111
Q ss_pred ----C-EEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 610 ----S-RLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 610 ----~-~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
. +++=+-.-|.|-||++++|..+..+.....
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 1 233455688999999999999998876543
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.32 E-value=3.1 Score=44.57 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEEEEe-------cccCCCEEEEEEcCCCCEEEEEe-C
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKK-------AVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSS-A 617 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dgt-------VrIWDl~t~~~l~tl-------~gH~~~ItsVafsPdg~~LaSgS-~ 617 (655)
.|.-.|..++++++|..++..-+.+. |-+|+... .+..+ ..-...|-+|++++++.+++..| .
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 47778999999999987666544432 33443322 22222 23457899999999998775555 6
Q ss_pred CCcEEEEECCCCeEEEEEecccce
Q 006229 618 DRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
-+++.+||..+++.+......+.+
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~D~c 261 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLPDAC 261 (305)
T ss_pred CCEEEEEECCCCCEeeccccCcee
Confidence 889999999999998776655443
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.30 E-value=1.5 Score=52.04 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=32.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
....|..+|.-+.||++|..|+|+..-|.|.+|.++
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345789999999999999999999999999999765
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.29 E-value=0.82 Score=45.66 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++..+++++.++.|..||..+|+.+-.+.. ...+...- ..++..++.++.|+.|+.+|+.+|+.+-.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 566788889999999999999998877764 22211111 224667777778999999999999988774
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.09 E-value=1.2 Score=53.56 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.....+|++-+.+| +||+|+.+|.||+||-...+....|.+-..+|..|+.+.||++|+..|.. .+.|+|+
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 34456777766666 78999999999999965555666677888999999999999997766654 5666665
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.89 E-value=0.58 Score=52.79 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.+|+..+.+ .|.+||+.+++.++.+.-. .|..|.|+++|.+++-.+.| +|.|++..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 8888887765 8999999999999998733 39999999999999999877 66776644
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.84 E-value=1.3 Score=49.13 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cc------cCCCEEEEEEcC-----CC-
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl--~g------H~~~ItsVafsP-----dg- 609 (655)
.+.++.-+....++|++|+.| |=-++|.|..||.+.|.|++....+..- .. ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 356666677778999999998 4559999999999999999988777652 22 345688998873 22
Q ss_pred --CEEEEEeCCCcEEEEECC
Q 006229 610 --SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 610 --~~LaSgS~DgtVrVWDl~ 627 (655)
-+|+.|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 478889999999999774
No 337
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.75 E-value=0.29 Score=37.74 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
...|.+++|+|...+||.|..||.|.|+.+ ++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
No 338
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.41 E-value=0.93 Score=52.17 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCC----CeEEE--Eeccc--------------------CCCEEEEEEcC----CCCEEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTES----FTVKS--TLEEH--------------------TQWITDVRFSP----SLSRLATS 615 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t----~~~l~--tl~gH--------------------~~~ItsVafsP----dg~~LaSg 615 (655)
+...|+.+..||.+....... +.... .+..+ ...+.+++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 666788888888877776543 11111 11111 23466677776 77899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecc
Q 006229 616 SADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.|+++||||+.++.|+.++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998776443
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.00 E-value=6 Score=36.24 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=56.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.-|..||.|..||+|.-. ..+..+. -++.|++++-... ..|+.+-.+|+|-+|+-..
T Consensus 16 ~eLlvGs~D~~IRvf~~~---------------------e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---------------------EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred ceEEEecCCcEEEEEeCC---------------------cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 568899999999999211 1222222 2466778876655 5789999999999998532
Q ss_pred CeEEEEecccCCCEEEEEEcC---CC-CEEEEEeCCCcEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSP---SL-SRLATSSADRTVR 622 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsP---dg-~~LaSgS~DgtVr 622 (655)
+.- ..+ -...++++++.. || .-|++|-.+|.|-
T Consensus 73 -RlW-RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLW-RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eee-eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 111 112 223366666654 22 2588888888764
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.96 E-value=0.058 Score=61.56 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=52.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE-CCC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TEN 628 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWD-l~t 628 (655)
...+.+++|-.|.+++.+|...+.|.++|++- ......+ .+..|..+..+| .+.|+++-+ |+.|-+|| .++
T Consensus 154 l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 154 LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 34566899999999999999999999999973 2222222 344556667778 777888876 99999999 444
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=0.67 Score=54.85 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=51.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADRT-----VRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-ItsVafsPdg~~LaSgS~Dgt-----VrVWDl~ 627 (655)
.|+|| ++.+..++.|+.||.|.+.+- +...++.|..|... |..+...-...+|+|.+.|+. |+|||++
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 55554 677889999999999988874 45666888888887 555544434478999998765 9999986
No 342
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=0.35 Score=58.31 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=57.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 567 GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
+.+++.|+.-|.|-..|+... .....=+.-..+|++|+|+-+|++++.|-.||.|.+||+..++.++.+..+...
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 457888888888888887653 111111234578999999999999999999999999999998888777665543
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=0.24 Score=53.96 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++..++..+..+.. +.+|+|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~------~wSC~wD 244 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ------IWSCCWD 244 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC------ceeeeec
Confidence 67777777777777788999999999999877 788999999999999999888877766633 4567765
No 344
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.85 E-value=2.3 Score=50.83 Aligned_cols=73 Identities=27% Similarity=0.319 Sum_probs=52.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCC----------CCeE---EEEe--------cccCCCEEEEEEcCC---CCE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV---KSTL--------EEHTQWITDVRFSPS---LSR 611 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----------t~~~---l~tl--------~gH~~~ItsVafsPd---g~~ 611 (655)
-.|..|.++++|++|+..|..+.+.+ .+. .|+. .+++ ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 45888999999999999888664433 331 1111 1111 134567999999996 578
Q ss_pred EEEEeCCCcEEEEECCCC
Q 006229 612 LATSSADRTVRVWDTENV 629 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg 629 (655)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 345
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.82 E-value=2.5 Score=45.27 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=49.5
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~-----DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
+.|.+| -+||+||++|++.=. .|.|-|||.. +.+.+..|..|--.-..|.|.|||+.|+.+
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 455677 579999999999644 4789999998 788899998887777788899999776654
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.73 E-value=12 Score=40.14 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=57.6
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC--C----e-EEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES--F----T-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t--~----~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
++.+..|-..-+.|+||||++.|+.+.. .+.|.-|++.. + + ....+..+.+.--.++...+|.+-+++-.+|
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 3333444344468999999987777655 36777776652 1 1 1122223344455566777888776555554
Q ss_pred -cEEEEECCCCeEEEEEeccc
Q 006229 620 -TVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 620 -tVrVWDl~tg~~v~~l~~~~ 639 (655)
.|.+|+.+ |+.+..+....
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred ceEEEECCC-CcEEEEEECCC
Confidence 89999998 88888776663
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=6.5 Score=46.95 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=75.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+++|=.+|.|..+ .|...+++..+. .....-.++|+.+.|..|++.++-+..-..|.+|.+..
T Consensus 138 ~~Iv~Gf~nG~V~~~---~GDi~RDrgsr~------------~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICY---KGDILRDRGSRQ------------DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred cEEEEEecCcEEEEE---cCcchhccccce------------eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 577888777887766 222222222221 11122357899999999998733344446788998873
Q ss_pred Ce-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cccce
Q 006229 587 FT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC-CYKCI 641 (655)
Q Consensus 587 ~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~-~~~~~ 641 (655)
.. .+.++..|...++|..|++....++.++ +..|.+||........+|. ++...
T Consensus 203 r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 203 RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 33 3556788888999999997555344443 4479999998655555665 54443
No 348
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.66 E-value=4 Score=47.89 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafs--Pdg~~LaSgS~DgtVrVWDl 626 (655)
.....+.-|.-++..++-+.-.++.|||++.+.....-. ...+.|.++.|. |++..+++.|.+..|.|+.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344555555556655555556789999999886443222 457889999996 58899999999999999953
No 349
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.47 E-value=1.5 Score=44.79 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------c-------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 562 ~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-------~-------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+..++.+|++-..+|.+++||+.+++++..- . .....|+.+.++.+|.-|++-+ +|...+||.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34557889999999999999999988765322 1 3567799999999998888876 4788999876
No 350
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.24 E-value=0.15 Score=60.25 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=57.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE-----------EcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa-----------fsPdg~~LaSgS~DgtVrVWDl 626 (655)
|.-|-|-+...+++.+-.+++|++..+.+... ..|++|...+++++ ++|||+.|+.++.||.|+.|-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33444444667888888899999877654332 45667887777655 5899999999999999888854
Q ss_pred -----CCCeEEEEEeccc
Q 006229 627 -----ENVRKLTFICCYK 639 (655)
Q Consensus 627 -----~tg~~v~~l~~~~ 639 (655)
+...|++....|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 3445555555554
No 351
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=3.2 Score=47.05 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=52.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEE-----Ee----CCCCeEEEEec--c---------cCCCEEEEEEcCCC---CEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVL-----WC----TESFTVKSTLE--E---------HTQWITDVRFSPSL---SRLA 613 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrI-----WD----l~t~~~l~tl~--g---------H~~~ItsVafsPdg---~~La 613 (655)
.|..|..++.|..++-.|-||.+.. |- +++++..-+++ + -.-.+.-++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778889999999999999987654 32 23342221111 0 11235668899975 6788
Q ss_pred EEeCCCcEEEEECCCCeEE
Q 006229 614 TSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v 632 (655)
.-+.|.+|||||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8889999999999876555
No 352
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=89.96 E-value=0.93 Score=51.38 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=70.0
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
..+.+.+++|++-|....+..|. +.......+||+.+|...+.+.++++......-+.||.|++++|.-.. ..|
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred eecCCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 35677777877766554443342 112233466777776555555555555555567899999999998776 568
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La 613 (655)
.|++..+..++..-.---..|....|+|.+..||
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 8999887655432222345678888888877766
No 353
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=89.73 E-value=7.1 Score=48.21 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEE----eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIW----Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
..+.|.++.|-+|..-|+.+..+|.|.+. |..+.... ..-.-+..|.+++||||...|+..+.+++|.+-+ ++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 34789999999999999999999999998 55443322 2223567899999999999999999999988775 556
Q ss_pred eEEEEEecc
Q 006229 630 RKLTFICCY 638 (655)
Q Consensus 630 ~~v~~l~~~ 638 (655)
+.+....-+
T Consensus 152 d~i~E~~l~ 160 (928)
T PF04762_consen 152 DPISEVPLD 160 (928)
T ss_pred eEEEEeecC
Confidence 666554433
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.22 E-value=2.3 Score=49.61 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=47.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-----CeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe
Q 006229 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 565 pdG~lLaSgs~DgtVrIWDl~t-----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
++|++... .+++|.+.|..+ .+.+..+. -......|.++|||++++.++. +.+|.|.|+.+.+
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 46776665 367899999988 34444443 5556788999999999777664 8999999998754
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.13 E-value=1.5 Score=47.61 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=48.7
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 564 SpdG~lLaSg---------s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
|||+++++.. +..+.+.|+|+.+++....... ...+....|||+|+.|+-.. |+.|.++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5777766653 2245788999999776654443 67899999999999999886 578999998877444
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=88.47 E-value=3.1 Score=46.77 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCeEEE
Q 006229 560 SCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENVRKLT 633 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~-Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gt--VrVWDl~tg~~v~ 633 (655)
.=.|+|||++|+-.+. .|. |.+.|++.... ..+......-.+-.|+|||++|+..+.+ |. |-+.|+.++..++
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 5578999997777654 343 55566666544 2333233333378899999998888753 43 6666766555433
Q ss_pred E
Q 006229 634 F 634 (655)
Q Consensus 634 ~ 634 (655)
.
T Consensus 365 ~ 365 (425)
T COG0823 365 I 365 (425)
T ss_pred E
Confidence 3
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.42 E-value=6.7 Score=43.66 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=55.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------CeEEEEe
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------------FTVKSTL 593 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-------------------------------------------~~~l~tl 593 (655)
.|+++.|+++..-|++|-..|.|.||-... ......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888888888888888888888873210 0122233
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
....+.|++|+.| |=-++|.|..||++.|.|+|.+..+..-
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~ 123 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE 123 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec
Confidence 3457889999987 6679999999999999999998888663
No 358
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.34 E-value=1.5 Score=33.25 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 006229 556 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 556 ~~V~sl~fSpdG---~lLaSgs~DgtVrIWDl~t 586 (655)
++|.+|.|||+. .+|+-+-+-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4888888889999999985
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.12 E-value=5.4 Score=46.73 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=42.1
Q ss_pred CeeEEEEcCCCCEEEEEeCC-CcEEEE-----------eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 557 KVESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~D-gtVrIW-----------Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
..++-.|+|||++|++.+.. ..+++. +++.++... .....|..++|+|||.+|+-.. ++.|.|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 37788999999988777533 223332 443333322 2356799999999999988766 466666
No 360
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.03 E-value=1.7 Score=33.02 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 006229 598 QWITDVRFSPSL---SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 598 ~~ItsVafsPdg---~~LaSgS~DgtVrVWDl~t 628 (655)
+.|.+++|+|+. .+|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888888999999995
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.64 E-value=2.8 Score=46.16 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=48.3
Q ss_pred eeEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-----------cE
Q 006229 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (655)
Q Consensus 558 V~sl~fSpdG~lLaSg-s~D----gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-----------tV 621 (655)
+..+.+||||++||-+ +.. .+|+|+|+++++.+...-.. .....+.|.++++.|+-...|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999987764 232 46999999999776532111 1223499999988776665433 38
Q ss_pred EEEECCCCe
Q 006229 622 RVWDTENVR 630 (655)
Q Consensus 622 rVWDl~tg~ 630 (655)
++|++.++.
T Consensus 205 ~~~~~gt~~ 213 (414)
T PF02897_consen 205 YRHKLGTPQ 213 (414)
T ss_dssp EEEETTS-G
T ss_pred EEEECCCCh
Confidence 888887653
No 362
>PRK10350 hypothetical protein; Provisional
Probab=86.76 E-value=2 Score=39.79 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=3.6
Q ss_pred hhh-hHHHh
Q 006229 76 ASY-IESQV 83 (655)
Q Consensus 76 ~qY-iq~Qq 83 (655)
.-| |..++
T Consensus 29 pGY~ipSQQ 37 (145)
T PRK10350 29 PGYQIPSQQ 37 (145)
T ss_pred CCCcCcHHH
Confidence 346 44443
No 363
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.18 E-value=6 Score=46.51 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCC---------CCeEEEEe--cccC-CCEEEEEEcCCCCEEEEEeCC
Q 006229 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 553 gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~---------t~~~l~tl--~gH~-~~ItsVafsPdg~~LaSgS~D 618 (655)
...+.|.+++|.. ||..+++.|..+.|.++.-. +...++.+ ..|+ ..|.+.+|.++|.+++.++
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-- 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-- 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--
Confidence 4567899999975 88899999999999998431 22233333 3555 6899999999998776654
Q ss_pred CcEEEEEC
Q 006229 619 RTVRVWDT 626 (655)
Q Consensus 619 gtVrVWDl 626 (655)
..+.|+|-
T Consensus 148 Nqlfv~dk 155 (631)
T PF12234_consen 148 NQLFVFDK 155 (631)
T ss_pred CEEEEECC
Confidence 35667664
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.09 E-value=6.7 Score=48.44 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=49.7
Q ss_pred eEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEEC
Q 006229 559 ESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lLaSg-----s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS---~DgtVrVWDl 626 (655)
++|+|--||.++|+. ...++|+|||.+ |.+-.+-+.-...=.+++|-|.|..+++-- .|..|.++.-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 469999999999983 333899999987 554444444455567899999999999854 3557888863
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.74 E-value=5.2 Score=46.91 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCeeEEEEcCCCCEEEEEe------CCCcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGG------HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs------~DgtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gtVrVWDl 626 (655)
..|.+.++||||+.++..- .|..-.|| +.. +.......+. ..++-.|+|+|..|++.+.. ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999777665 34444455 542 2222223333 38889999999988888643 23444443
Q ss_pred CCCeEEEEEecccce---eeeeceeeEEEecC
Q 006229 627 ENVRKLTFICCYKCI---FVSTAIGSCFFAPT 655 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~---v~s~~Vss~~F~P~ 655 (655)
.....+..+...... .....|.++.|+||
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpD 458 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRD 458 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCC
Confidence 222222222111111 11334788888886
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=84.68 E-value=2.2 Score=51.28 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=43.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
+-+|+.||.+|.||+|+.. + .+....+.+-..+|..|+.+.||+||+..| +..|-|+|+
T Consensus 588 ~G~iavgs~~G~IRLyd~~-g------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRL-G------------------KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeeccc-c------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3678999999999999411 1 123345567778999999999999987766 466777775
No 367
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.50 E-value=0.17 Score=43.35 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=42.6
Q ss_pred hhhhhhhhhcccc-----------cc---cchhhhhHH-HHHHHH-HHhhcCCCCccchhhhhhhhhhccCCc
Q 006229 271 LDQFRSGLLQQQK-----------SL---TQPYNQLQL-QQLMLQ-AQQNLASPSANDLESRKLRMLHNSRNM 327 (655)
Q Consensus 271 ~~~~~~~~~~~~~-----------~~---~~~~~~~~~-~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (655)
||++|.+|..+.. |. .+|.+.|++ ++.|+. .++..+....|+-|+.|||..|++||.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6899999844332 22 777777776 777666 555556677899999999999999974
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.48 E-value=6.6 Score=42.72 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=53.1
Q ss_pred eEEEEcCCCCEEEEEeC---C-------CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEEC
Q 006229 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~---D-------gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVWDl 626 (655)
--+++++....|++--+ + ..|.++|+.+++.+..+.- ...|.+|..+-+.. +|++.+ .|+.|.|||.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 35677765544444211 1 1477889999999998862 33588999998776 665554 5899999999
Q ss_pred CCCeEEEEEeccc
Q 006229 627 ENVRKLTFICCYK 639 (655)
Q Consensus 627 ~tg~~v~~l~~~~ 639 (655)
.+|+.++.+..-.
T Consensus 320 ~tGk~~~~~~~lG 332 (342)
T PF06433_consen 320 ATGKLVRSIEQLG 332 (342)
T ss_dssp TT--EEEEE---S
T ss_pred cCCcEEeehhccC
Confidence 9999999887543
No 369
>PRK02888 nitrous-oxide reductase; Validated
Probab=84.46 E-value=9.5 Score=44.69 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeE------------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTV------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~~~------------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
.-.|+++|||+++++++ .+.+|.|.|+.+.+. ....+- .-.-...+|+++|....|.-.|..|-.|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEE
Confidence 45789999999777765 589999999987552 222221 1122457789999888888899999999
Q ss_pred ECCC
Q 006229 625 DTEN 628 (655)
Q Consensus 625 Dl~t 628 (655)
|+..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 9875
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=4.4 Score=46.07 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..|++-..+| +||.||.+|.||+||.-..+....|.|-..+|+.|..+.+|++|+..|.. .+.|-|+
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 4555555455 89999999999999984445566778899999999999999997766554 4444444
No 371
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=83.45 E-value=0.35 Score=51.67 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=0.0
Q ss_pred cccCCCCCC
Q 006229 127 DSTQHLNDT 135 (655)
Q Consensus 127 ~~~~~~~~~ 135 (655)
...+.+||.
T Consensus 377 qQq~qmngg 385 (468)
T PF11498_consen 377 QQQHQMNGG 385 (468)
T ss_dssp ---------
T ss_pred hhhhhcccc
Confidence 334446653
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.43 E-value=18 Score=38.03 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
.++|++.|+..+.+.+..+.++. .+|. +..+. +-++. ....+++.++..|++|++....|.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs-------~~w~---------f~~~~--~vk~~-a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGS-------QIWN---------FVILE--TVKVR-AQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchh-------heee---------eeehh--hhccc-eEEcCCCceEEEecCCCcEEEecc
Confidence 45788888888888777555542 1121 11111 01121 223567899999999999999999
Q ss_pred CCCeEEEEec
Q 006229 585 ESFTVKSTLE 594 (655)
Q Consensus 585 ~t~~~l~tl~ 594 (655)
++..++...+
T Consensus 123 ~~~~cVyksk 132 (354)
T KOG4649|consen 123 KTYGCVYKSK 132 (354)
T ss_pred cccceEEecc
Confidence 9988887765
No 373
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.11 E-value=19 Score=39.45 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=48.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++..|+.++.|+.|..+|..+++.+-....-. ....+..+ .+.+|+.++.||.|.+.|..+|+.+.....
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 35677778889999999999987654332111 11222222 266888899999999999999998866654
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.60 E-value=0.26 Score=56.48 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=76.4
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEe----CCCcEEE
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL 581 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs----~DgtVrI 581 (655)
..++.|+.+|.|.+.......+. ......+|...++|++|++ |..+||.|- .|..++|
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 56789999999998855544221 1112356778899999999 777888773 2567999
Q ss_pred EeCCCC--eEEE--Eec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 582 WCTESF--TVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 582 WDl~t~--~~l~--tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
||+.++ .+.. .|. +......++||..+.+++.+|..-+.|+++|+|
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence 999876 1111 222 355667799999899999999999999999998
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=82.32 E-value=3.9 Score=41.92 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=58.2
Q ss_pred eeccCCCCceEEEEecCCCCcc----ccc----Cc--ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL----TSA----PN--QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l----ass----s~--~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.+..+..+..+.+|.+...+.+ .+. .+ .....+.+..+++.|+.|+.|...-.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----------------- 134 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN----------------- 134 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-----------------
Confidence 4455566777777777642211 111 11 11233347788889999999943322
Q ss_pred eeeeEEeecCCC-CCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCC
Q 006229 544 TFTEFQLIPAST-SKVESCHFSPDGKLLATG--GHDKKAVLWCTESF 587 (655)
Q Consensus 544 t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~ 587 (655)
+.+...-.|+ ..+..+..+..++.|+.+ |+|..++.|++...
T Consensus 135 --k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 135 --KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred --ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3344444566 566667777777788888 88888999988643
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.37 E-value=17 Score=37.77 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=43.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC--CCEEEEEeC
Q 006229 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSA 617 (655)
Q Consensus 564 SpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~ 617 (655)
..+|++.+++-.-++|.-.|..+|+.+.++.--+..|+|+||--- ..+.+|+..
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 557888888888899999999999999999888999999999642 224445544
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.11 E-value=16 Score=40.30 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEE
Q 006229 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKL 632 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v 632 (655)
.-..++|+++++.+..+.. +++|.+.|..+.+.+.+..--... ..++++|+|..++.+. .+++|.+.|..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4557999999987666655 689999999998888775433334 8899999999665555 7889999997765444
No 378
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=80.42 E-value=0.53 Score=50.37 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=0.0
Q ss_pred CchHHH
Q 006229 49 GGFLFE 54 (655)
Q Consensus 49 ~~fL~E 54 (655)
+.||.|
T Consensus 276 D~~L~e 281 (468)
T PF11498_consen 276 DTFLNE 281 (468)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 345554
No 379
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=80.22 E-value=46 Score=34.71 Aligned_cols=100 Identities=10% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEec-----ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~------~l~tl~-----gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+-.-.|.+..++.++++--.++.+.++++.... ....+. .+...+-.|+|+|.+..|+.+-...-.+||
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 346678888788777766668999999883211 111121 355668999999998888888887777777
Q ss_pred ECCC---CeEEEEEe--ccc-ceeeeeceeeEEEecC
Q 006229 625 DTEN---VRKLTFIC--CYK-CIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~t---g~~v~~l~--~~~-~~v~s~~Vss~~F~P~ 655 (655)
.+.. ...+.... ... .......++++.|||.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~ 181 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPR 181 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETT
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCC
Confidence 7754 22222221 111 3344556788888884
No 380
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=80.14 E-value=30 Score=40.20 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=46.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTEN 628 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~--t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~t 628 (655)
.|.|||....|+.=.....-.+++++ +.+...-+ .-.+.|.|.||..||.+|+.+-... .-+|||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 57899988877765544444566654 33344444 3567899999999999877665432 378998653
No 381
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.97 E-value=4.8 Score=47.78 Aligned_cols=113 Identities=11% Similarity=0.168 Sum_probs=70.0
Q ss_pred CcEEEeccCCCcEEEEecCCCC--------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEc--CCCCEEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDA--------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGH 575 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~--------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fS--pdG~lLaSgs~ 575 (655)
...|..+..||.|.+|...+-. +.+....+ ...++...++- ...+..|+++ ...++||+++.
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r-------~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsN 185 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSR-------LKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSN 185 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccc-------ccCCCCeEeec-CCceeEEEEEecCcceEEEEecC
Confidence 3678888899999999432110 00000000 11122222222 2468899998 78889999988
Q ss_pred CCcEEEEeCCCC--eEEE-EecccCCCEEEEEEcCCC------CEEEEEeCCCcEEEEEC
Q 006229 576 DKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSL------SRLATSSADRTVRVWDT 626 (655)
Q Consensus 576 DgtVrIWDl~t~--~~l~-tl~gH~~~ItsVafsPdg------~~LaSgS~DgtVrVWDl 626 (655)
-..|.||-.... +... .-..|..-|-+|+|-++. .+|+.++-.|.|-+|++
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888865432 1111 111366789999997743 27888889999888887
No 382
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=79.60 E-value=5 Score=45.14 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=45.0
Q ss_pred eEEEEcCCCCEEEE-EeCCCcEE--EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCe
Q 006229 559 ESCHFSPDGKLLAT-GGHDKKAV--LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTENVR 630 (655)
Q Consensus 559 ~sl~fSpdG~lLaS-gs~DgtVr--IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dgt--VrVWDl~tg~ 630 (655)
..-.|+|||+.|+- ...|+... +.|+.+... ..+..-.+.-+.=.|+|||++|+-.|. .|. |.+.|++...
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 45789999995554 45666644 557766553 335544444446779999998776654 555 5555666543
No 383
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.59 E-value=16 Score=39.92 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=35.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-----Ce---EEEEecc----cCCCEEEEEEcCCCCEEEEEe
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FT---VKSTLEE----HTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-----~~---~l~tl~g----H~~~ItsVafsPdg~~LaSgS 616 (655)
.....++|.++| +++ ++.+..+++.|.+. ++ .+..+.. +......++|.|||.+.++-+
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 345789999888 444 44555455556532 11 2222322 245578999999998777655
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=78.65 E-value=30 Score=36.08 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=52.2
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH-~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
+.+.+-...|+.|.|+|+.. ++++...++.|...+. +|+.++.+.-. .+..-.|++.-++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45556666799999999754 7777778888888886 47777766422 456778888877777776656999999988
Q ss_pred C
Q 006229 627 E 627 (655)
Q Consensus 627 ~ 627 (655)
.
T Consensus 94 ~ 94 (248)
T PF06977_consen 94 D 94 (248)
T ss_dssp -
T ss_pred e
Confidence 4
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.64 E-value=77 Score=32.87 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=46.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEE-EEec--ccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEEC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVK-STLE--EHTQWITDVRFSPSLSRLATSS---ADRTVRVWDT 626 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWD-l~t~~~l-~tl~--gH~~~ItsVafsPdg~~LaSgS---~DgtVrVWDl 626 (655)
.++.-.|++++.+.+....+..++++. ..++... ..+. +-...|++++++|||.++|-.. .++.|.|=-+
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 577788999987776666677777773 3333222 1221 1122899999999999877666 3566766655
No 386
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.62 E-value=21 Score=39.26 Aligned_cols=68 Identities=7% Similarity=-0.023 Sum_probs=47.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+..++.++.++.|..+|.++|+.+-..........+..+ .+..++.++.|+.|.-+|+.+|+.+-.+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 456777888999999999999877655433221111112 24567778889999999999998776554
No 387
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=78.10 E-value=4.2 Score=44.12 Aligned_cols=71 Identities=24% Similarity=0.228 Sum_probs=46.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-Eecc-------c---------CCCEEEEEEcCCCCEEEEEeC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEE-------H---------TQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~g-------H---------~~~ItsVafsPdg~~LaSgS~ 617 (655)
...+....|||||++|+-.. ++.|.+++..++.... +..| - -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 46788999999999988875 5789999987774442 2223 0 122356889999999998876
Q ss_pred CC-cEEEEEC
Q 006229 618 DR-TVRVWDT 626 (655)
Q Consensus 618 Dg-tVrVWDl 626 (655)
|- .|+.+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 54 3555443
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.97 E-value=24 Score=43.84 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.|.++.|.-+..-++.+..+|.|.+-|..+.... ...--...|.+.+|+||..+++-.+.+++|.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 57999999999999999999999999988775433 2233577899999999999999998888876543
No 389
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.84 E-value=29 Score=39.32 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=44.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
.-..++|+++++ +|+-....+|+|+.--+.+....+.- ...+..|-. |.+|+..+.+ .|.+||+.+++.++.+.
T Consensus 70 ~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 70 SGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID 143 (443)
T ss_dssp E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES
T ss_pred ceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe
Confidence 345788998554 66666688999963222222122321 112333422 7777777666 89999999999998886
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
... |..+.|+++
T Consensus 144 v~~-------vk~V~Ws~~ 155 (443)
T PF04053_consen 144 VSA-------VKYVIWSDD 155 (443)
T ss_dssp S-E--------EEEEE-TT
T ss_pred cCC-------CcEEEEECC
Confidence 542 335566553
No 390
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.80 E-value=13 Score=36.29 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.4
Q ss_pred CEEEEEEcCCC------CEEEEEeCCCcEEEEECCC
Q 006229 599 WITDVRFSPSL------SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 599 ~ItsVafsPdg------~~LaSgS~DgtVrVWDl~t 628 (655)
.|.+++|||.| .+|+..+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999943 4799999999999998763
No 391
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.81 E-value=3.4 Score=42.33 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhcCCCC
Q 006229 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (655)
Q Consensus 11 ~L~~yIydyl~k~~~~~tA~~f~~e~~~~~ 40 (655)
-+|.-|.|||+..||.++|+.|.+|++|..
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~ 57 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKESGIKP 57 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccccCCCC
Confidence 489999999999999999999999999865
No 392
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.57 E-value=1e+02 Score=34.52 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCCEEEEEEcCCCC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLS 610 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH-~~~ItsVafsPdg~ 610 (655)
++|..+++||+|++||.-..+|++.|...+-.+.+..+.-. ......+.|+-+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 57999999999999999999999999877655555555432 34566777775543
No 393
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.39 E-value=6.7 Score=45.17 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCeeEEEEcC----CCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 006229 556 SKVESCHFSP----DGKLLATGGHDKKAVLWCTESFTVKSTL 593 (655)
Q Consensus 556 ~~V~sl~fSp----dG~lLaSgs~DgtVrIWDl~t~~~l~tl 593 (655)
..+.+++++. +..+|++-+.|+++|+||+.++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 6779999999999999999999997665
No 394
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=71.20 E-value=61 Score=39.14 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
..+|.+..|..| ++-|+.||.|.|+...+.-....++ .|...|+++...-++-+++-++.| ++++++..+...
T Consensus 626 ~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl~h 701 (925)
T KOG3522|consen 626 SLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETLWH 701 (925)
T ss_pred Cccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccccCC
Confidence 457888888754 4556778999999887765554444 466789999998888888777777 566666665444
Q ss_pred EEE
Q 006229 632 LTF 634 (655)
Q Consensus 632 v~~ 634 (655)
...
T Consensus 702 lqd 704 (925)
T KOG3522|consen 702 LQD 704 (925)
T ss_pred ccc
Confidence 333
No 395
>PRK10115 protease 2; Provisional
Probab=70.60 E-value=19 Score=42.95 Aligned_cols=71 Identities=8% Similarity=0.008 Sum_probs=47.7
Q ss_pred CeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 006229 557 KVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWD 625 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~-----DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D------gtVrVWD 625 (655)
.+..+.|||||++|+.+.. ...|+|-|+.+++.+....... -..++|.+|++.|+-...| ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 3667889999998877533 2358888998886432221121 2569999999866555432 3588888
Q ss_pred CCCC
Q 006229 626 TENV 629 (655)
Q Consensus 626 l~tg 629 (655)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 8877
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.30 E-value=75 Score=34.21 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=46.8
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
.+++.+. ..-.+.|..+..++||++++++..-...+-||--...-...-+.-...|.++.|.|++.+.+.+ ..|.|+
T Consensus 134 ~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 134 KTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp SSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred CCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEE
Confidence 3454432 2334678899999999999998887777888864221111222356789999999998776654 888888
Q ss_pred EEE
Q 006229 623 VWD 625 (655)
Q Consensus 623 VWD 625 (655)
+=|
T Consensus 211 ~s~ 213 (302)
T PF14870_consen 211 FSD 213 (302)
T ss_dssp EEE
T ss_pred Ecc
Confidence 777
No 397
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.24 E-value=21 Score=25.57 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeEEEEecc
Q 006229 565 PDGKLLATGG-HDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 565 pdG~lLaSgs-~DgtVrIWDl~t~~~l~tl~g 595 (655)
|++++|+++. .+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666555 578999999999888877653
No 398
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=68.21 E-value=74 Score=34.27 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=44.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSS 616 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~Dg-tVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS 616 (655)
.+.-=.++...+|.+-+++..++ .|.+|+.+ ++.+..++-....+++++|-- +.+.|+..+
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 34444677788898776666655 89999998 899888887768899999963 445544444
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.83 E-value=12 Score=46.05 Aligned_cols=71 Identities=17% Similarity=0.005 Sum_probs=52.3
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
-+.|+.|+|.-. ..+.+..|+.|+|.-+.-.....+--.-+..++||+|+|.|+.|+.|-..|++.-|-..
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 467889998433 46667788988887664332221112356789999999999999999999999988754
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.35 E-value=1.3e+02 Score=34.83 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=41.3
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+.|.-||+.+++.+=..........+. +.-.+.+++.++.||.++.+|.++|+.+-.+.....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 346667777777665544222111121 112456788888899999999999999988776543
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=66.78 E-value=60 Score=35.13 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=43.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
...+.++.+.+++.+++++..-..++.+|- .++.-.. -.+-...++++.+.++++.++.+ ..|.+++=+.+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 456889999999877766654333333332 2221111 22345678999999998876654 55666432344443
No 402
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=66.69 E-value=58 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.+.|..+++||++++||.-..+|.+.|.+.+-.+++..+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 357999999999999999999999999987655566555544
No 403
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.25 E-value=1.2e+02 Score=33.28 Aligned_cols=70 Identities=21% Similarity=0.113 Sum_probs=44.7
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEecccCCC--EEEEEEcCCCCEEEEEeC-C---Cc
Q 006229 560 SCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KSTLEEHTQW--ITDVRFSPSLSRLATSSA-D---RT 620 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~Dg-----------tVrIWDl~t~~~--l~tl~gH~~~--ItsVafsPdg~~LaSgS~-D---gt 620 (655)
.+.|.+|++.|+....|. .|++|.+.+... ...+.+.... ...+.+++|+++|+..+. . ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 499999988776665443 377888876532 3455543333 678899999999775443 2 34
Q ss_pred EEEEECCCC
Q 006229 621 VRVWDTENV 629 (655)
Q Consensus 621 VrVWDl~tg 629 (655)
|.+-|+..+
T Consensus 254 v~~~d~~~~ 262 (414)
T PF02897_consen 254 VYLLDLDDG 262 (414)
T ss_dssp EEEEECCCT
T ss_pred EEEEecccc
Confidence 777788764
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.09 E-value=55 Score=34.13 Aligned_cols=85 Identities=11% Similarity=-0.018 Sum_probs=55.6
Q ss_pred eEEEEcCCCCEE-EEEeCCCcEEEEe--CCCCe-----EEEEecc---cCCC-EEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE---HTQW-ITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lL-aSgs~DgtVrIWD--l~t~~-----~l~tl~g---H~~~-ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
+.++|+.|.+.+ ++-+.+-+|.-|| ..+|. .+..++- .... --.++..-+|.+.+++=..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 468899887754 4556778888888 44542 2323321 0111 112334557888888878889999999
Q ss_pred CCCeEEEEEecccceee
Q 006229 627 ENVRKLTFICCYKCIFV 643 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~v~ 643 (655)
.+|+.+.++.-....+.
T Consensus 241 ~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQIT 257 (310)
T ss_pred CCCcEEEEEEcCCCceE
Confidence 99999998877655444
No 405
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=65.99 E-value=7.3 Score=47.94 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=4.9
Q ss_pred hhHHhhhhhHH
Q 006229 144 AKAFTTKMYED 154 (655)
Q Consensus 144 ~~~~~~~~~~~ 154 (655)
.+.+|+..|-+
T Consensus 1956 ~s~~a~s~~~~ 1966 (2131)
T KOG4369|consen 1956 SSQLANSYYPS 1966 (2131)
T ss_pred CCccccCCCCC
Confidence 34444444444
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=65.02 E-value=72 Score=34.87 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------CCC-cEEEEeCC--CCe--EEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTE--SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs-----------~Dg-tVrIWDl~--t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
.....|+|.++|+++++-. ..+ .|.+++-. +++ ....|.......+.|+|.+++ +++ ++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456899999999877753 223 66666543 233 234444444566889999988 444 44554
Q ss_pred cEEEEECC
Q 006229 620 TVRVWDTE 627 (655)
Q Consensus 620 tVrVWDl~ 627 (655)
.+++.|..
T Consensus 92 i~~~~d~~ 99 (367)
T TIGR02604 92 ILFLRDKD 99 (367)
T ss_pred EEEEeCCC
Confidence 44455553
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.89 E-value=15 Score=39.04 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=44.4
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 562 ~fSpdG~lLaSgs~D-----gtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
+||+||++|+..-.| |.|-|||.+. ...+..|..|.-.-..|.|.+||+.|+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999999886554 6789999874 356677888887788899999999988764
No 408
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.74 E-value=5.9 Score=43.12 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCC
Q 006229 5 NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (655)
Q Consensus 5 ~~~~~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~ 39 (655)
.|. ++.||.+|-|||+++||+++|.-|.++..+.
T Consensus 112 ~w~-r~~l~r~vvdhmlr~gy~~~A~~L~K~s~le 145 (389)
T KOG0396|consen 112 KWP-RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLE 145 (389)
T ss_pred HhH-HHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 353 7889999999999999999999999998765
No 409
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=63.06 E-value=73 Score=36.35 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 608 dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.+.+|+.++.||.|+.+|.++|+.+-.+....
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 46789999999999999999999887776543
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.96 E-value=12 Score=46.25 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=44.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc----cCCCEEEEEEcCCCCEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g----H~~~ItsVafsPdg~~LaS 614 (655)
+..++|++|+|.|+.|+.|-..|+++-|-.. ++.+..+.+ ....|.||+|-..-.+|++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 4568999999999999999999999887643 343333322 1468999999876666664
No 411
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=62.91 E-value=35 Score=24.32 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEEecccc
Q 006229 607 PSLSRLATSS-ADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 607 Pdg~~LaSgS-~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|++++|+.+. .+++|.++|+.+++.+..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 5677766655 588999999999988888776543
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.69 E-value=89 Score=32.38 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=53.7
Q ss_pred CeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE
Q 006229 557 KVESCHFSPDGKLLATGG---HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENVRKL 632 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs---~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD-l~tg~~v 632 (655)
.+.+.++++||..++... ....|+++.... .....+.+. .++.-.|++++...+....+..++++- ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999776655 233455554432 222222333 788889999987777666677777773 3333222
Q ss_pred E-EEecccceeeeeceeeEEEecC
Q 006229 633 T-FICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 633 ~-~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. .+..... .. .|.++.++||
T Consensus 102 ~~~v~~~~~--~~-~I~~l~vSpD 122 (253)
T PF10647_consen 102 PVEVDWPGL--RG-RITALRVSPD 122 (253)
T ss_pred eEEeccccc--CC-ceEEEEECCC
Confidence 1 1111110 00 5667777775
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=61.06 E-value=68 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe----cccCCCEEEEEEcCC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS 608 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~---l~tl----~gH~~~ItsVafsPd 608 (655)
-++++|.|||++|++ -..|.|++++ ..+.. +..+ .........|+|+|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 468999999988776 4599999999 44443 2222 234567899999994
No 414
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=59.36 E-value=29 Score=36.94 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
..++|++|+-- .++++++. .++|.+|++...+ .+.... .....|+++... +.+|+.|.....|.++..+
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred ecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 36789988866 45444333 4889999987766 333222 123366666655 6699999887787777443
No 415
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.06 E-value=1.3e+02 Score=32.26 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=57.0
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 551 l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
+.+-+..|+++.|+|+.+.|++........||=...|..++++. +- ..--.|.|.-+|.++++-=.|+++.+..+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34555669999999999988887777777777777888888774 31 2223456666777777777788888887765
Q ss_pred Ce
Q 006229 629 VR 630 (655)
Q Consensus 629 g~ 630 (655)
..
T Consensus 160 ~t 161 (316)
T COG3204 160 DT 161 (316)
T ss_pred Cc
Confidence 43
No 416
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=58.99 E-value=63 Score=35.94 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=41.6
Q ss_pred EEEcCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEecccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 561 CHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 561 l~fSpdG~lLaSg-s~Dg--tVrIWDl~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
=+|..||+.|+-+ ..|+ .+.+.|+.+++.. .|..+. .......++|+++.|+=...+..|+--|+++.+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3678899755544 4455 4666688887766 444333 223356678888887766666788999999887654444
Q ss_pred ccc
Q 006229 637 CYK 639 (655)
Q Consensus 637 ~~~ 639 (655)
...
T Consensus 120 ~p~ 122 (386)
T PF14583_consen 120 VPD 122 (386)
T ss_dssp --T
T ss_pred CCc
Confidence 433
No 417
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=58.74 E-value=93 Score=34.28 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=58.3
Q ss_pred eEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEE
Q 006229 559 ESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENVRKLT 633 (655)
Q Consensus 559 ~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~---DgtVrVWDl~tg~~v~ 633 (655)
..+++++++. .+++...+..|.+.|+.+.+++.... |. .-..++|+|++..+..+.. +++|.+-|..+.+.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4678888887 55555566999999988777766553 33 6678999999977665554 6889999988888877
Q ss_pred EEeccc
Q 006229 634 FICCYK 639 (655)
Q Consensus 634 ~l~~~~ 639 (655)
++..+.
T Consensus 155 ~~~vG~ 160 (381)
T COG3391 155 TIPVGN 160 (381)
T ss_pred EEecCC
Confidence 755443
No 418
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=58.32 E-value=1.8e+02 Score=33.22 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=38.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec-----ccCCCEEEEEEcCCC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 609 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl~-----gH~~~ItsVafsPdg 609 (655)
-..-..++|.|||++|++--..|.|++++..++.. +..+. .-......|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34567899999999888776579999998655432 22221 125678999999874
No 419
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=56.75 E-value=39 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=18.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-CC--CcEEEE
Q 006229 554 STSKVESCHFSPDGKLLATGG-HD--KKAVLW 582 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs-~D--gtVrIW 582 (655)
......+..|||||+.|+-++ .+ +...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567899999999766654 44 555555
No 420
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=56.62 E-value=36 Score=24.24 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=20.6
Q ss_pred cccCCCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 006229 594 EEHTQWITDVRFSPSLSRLATSS-AD--RTVRVW 624 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS-~D--gtVrVW 624 (655)
.-......+..|+|||++|+-++ .+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33555678899999999876555 45 666665
No 421
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.60 E-value=73 Score=34.13 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC------C------------CcEEEEeCCC
Q 006229 525 DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH------D------------KKAVLWCTES 586 (655)
Q Consensus 525 d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~------D------------gtVrIWDl~t 586 (655)
.+-+....++.++|.... +..+.++..|.-.--.+.|.+||++|+.+.. | -.+.+.|..+
T Consensus 133 ndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 133 NDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred CCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 333556667777777644 5667778888766778999999999888643 1 1233444444
Q ss_pred CeEEE--Eec--ccCCCEEEEEEcCCCCEEEEE
Q 006229 587 FTVKS--TLE--EHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 587 ~~~l~--tl~--gH~~~ItsVafsPdg~~LaSg 615 (655)
|.++. ++. -+.-.|..|+..+||+.++-|
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 44332 222 234457777777777665544
No 422
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.33 E-value=57 Score=37.57 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=46.8
Q ss_pred eEEeecCCCCCeeEEEEcCCCCE-------EEEEeCCCcEEEEeCCCC-e-EEEEecccC----CCEEEEEEcCCCCEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKL-------LATGGHDKKAVLWCTESF-T-VKSTLEEHT----QWITDVRFSPSLSRLA 613 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~l-------LaSgs~DgtVrIWDl~t~-~-~l~tl~gH~----~~ItsVafsPdg~~La 613 (655)
.|...+-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-- . .+..-.+|. ....|.+-. ...+||
T Consensus 368 IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~Iv 445 (644)
T KOG2395|consen 368 IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIV 445 (644)
T ss_pred eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEE
Confidence 3333333433 666667665441 234667888999998732 2 222223332 223444433 346899
Q ss_pred EEeCCCcEEEEEC
Q 006229 614 TSSADRTVRVWDT 626 (655)
Q Consensus 614 SgS~DgtVrVWDl 626 (655)
.||.+|-|||||-
T Consensus 446 vgS~~GdIRLYdr 458 (644)
T KOG2395|consen 446 VGSLKGDIRLYDR 458 (644)
T ss_pred EeecCCcEEeehh
Confidence 9999999999996
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.85 E-value=24 Score=39.58 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=42.7
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+...|......+.+|+.+|++++.|+...=|+|.|+|+.++..++.+++-+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 4455666777899999999999888877778999999999988888776554
No 424
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.38 E-value=1.3e+02 Score=34.40 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=45.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEE
Q 006229 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----IT-DVRFSPSLSRLATSS---------ADRTVRVWDTENVRKL 632 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-----It-sVafsPdg~~LaSgS---------~DgtVrVWDl~tg~~v 632 (655)
..++.++.|+.|+-+|.++|+.+-.+...... |. +..+. +..++.++ .++.|...|+.+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778888999999999999988666533221 11 11222 24444443 4678999999999877
Q ss_pred EEEec
Q 006229 633 TFICC 637 (655)
Q Consensus 633 ~~l~~ 637 (655)
-.+..
T Consensus 189 W~~~~ 193 (488)
T cd00216 189 WRFYT 193 (488)
T ss_pred eEeec
Confidence 66544
No 425
>PF10477 EIF4E-T: Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E; InterPro: IPR018862 EIF4E-T is the transporter protein for shuttling the mRNA cap-binding protein EIF4E protein, targeting it for nuclear import. EIF4E-T contains several key binding domains including two functional leucine-rich NESs (nuclear export signals) between residues 438-447 and 613-638 in the human protein. The other two binding domains are an EIF4E-binding site, between residues 27-42 in Q9EST3 from SWISSPROT, and a bipartite NLS (nuclear localisation signals) between 194-211, and these lie in family EIF4E-T_N. EIF4E is the eukaryotic translation initiation factor 4E that is the rate-limiting factor for cap-dependent translation initiation [].
Probab=55.01 E-value=11 Score=44.21 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=13.7
Q ss_pred CCCchhHHhhhhhHHhhh
Q 006229 140 RPGFAKAFTTKMYEDRLK 157 (655)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ 157 (655)
.+-|..++..|||+++=|
T Consensus 559 ~aFTPTSVlRKMta~kek 576 (578)
T PF10477_consen 559 LAFTPTSVLRKMTADKEK 576 (578)
T ss_pred CCCCcHHHHHHHHhhhcc
Confidence 344777899999999654
No 426
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=54.69 E-value=43 Score=34.38 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=44.9
Q ss_pred CCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 566 DGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
.+..|+.|..|| |.++++. ........ +...|..+...|+-+.|+.-+ |+.|+++|+......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 577899999988 8888883 33333332 233399999999877777665 599999998754433
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.27 E-value=2.3e+02 Score=34.54 Aligned_cols=71 Identities=6% Similarity=-0.004 Sum_probs=47.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-------------EEEEcC--CCCEEEEEeC----------CCc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-------------DVRFSP--SLSRLATSSA----------DRT 620 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It-------------sVafsP--dg~~LaSgS~----------Dgt 620 (655)
++..|+.++.|+.|.-.|.++|+.+-.|. +.+.|. .+.-.| .+..|+.|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 34577788889999999999999887663 222221 111122 2345565643 688
Q ss_pred EEEEECCCCeEEEEEec
Q 006229 621 VRVWDTENVRKLTFICC 637 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~ 637 (655)
|+-+|+++|+.+-.+..
T Consensus 338 I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEEECCCCcEeeEEec
Confidence 99999999998866653
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.19 E-value=19 Score=36.79 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=25.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 605 FSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 605 fsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
+..++.+|+..+.+|.+++||+.+++++..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~ 47 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP 47 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence 445688999999999999999999887654
No 429
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=53.97 E-value=1.2e+02 Score=33.71 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 598 QWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 598 ~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
..|..|+..+..+.|++.+.++.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999999999999999999999974
No 430
>PHA02713 hypothetical protein; Provisional
Probab=52.39 E-value=60 Score=37.81 Aligned_cols=63 Identities=5% Similarity=0.046 Sum_probs=42.3
Q ss_pred CCCEEEEEeCC------CcEEEEeCCC---CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCe
Q 006229 566 DGKLLATGGHD------KKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENVR 630 (655)
Q Consensus 566 dG~lLaSgs~D------gtVrIWDl~t---~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg--tVrVWDl~tg~ 630 (655)
++++.+.||.+ ..|..||.++ .+.+..+......+..+.+ +++..++|+.|+ +|-.||+.+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 57787888765 2466788876 3455555444444444444 688899999998 78888887654
No 431
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=52.23 E-value=1.6e+02 Score=34.09 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=43.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCCEEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeEEEEEe
Q 006229 568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~ItsVafsP---dg~~LaSgS------~DgtVrVWDl~tg~~v~~l~ 636 (655)
..++.++.|+.|.-.|.++|+.+-.... +... ..+.-+| ++ .|+.++ .+|.|.-+|+++|+.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4566778899999999999988755432 2110 1111122 34 444443 37899999999998875544
Q ss_pred c
Q 006229 637 C 637 (655)
Q Consensus 637 ~ 637 (655)
.
T Consensus 199 ~ 199 (527)
T TIGR03075 199 T 199 (527)
T ss_pred C
Confidence 3
No 432
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.00 E-value=97 Score=32.90 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=47.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEe--cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.|+++... +.+|+.|...+.|.++..+. ...+..+ ......|+++.|-++++.++.+..+|.|.++...
T Consensus 131 ~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 131 YITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 56677665 56999999888888774432 2323223 2245568999998777899999999999999775
No 433
>PRK10115 protease 2; Provisional
Probab=50.76 E-value=3.1e+02 Score=32.86 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=42.0
Q ss_pred eEEEEcCCCCEEEEEeCC------CcEEEEeCCCC--eEEEEecccCCCEE-EEEEcCCCCEEEEEeC---CCcEEEEEC
Q 006229 559 ESCHFSPDGKLLATGGHD------KKAVLWCTESF--TVKSTLEEHTQWIT-DVRFSPSLSRLATSSA---DRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~D------gtVrIWDl~t~--~~l~tl~gH~~~It-sVafsPdg~~LaSgS~---DgtVrVWDl 626 (655)
..++|++|++.|+....| ..|++|++.++ +....+.+...... .+..+.++++++..+. ++.+.+|++
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999999866555433 35777888877 44445554444444 3333447887655443 456999995
No 434
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=49.85 E-value=3e+02 Score=28.08 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=42.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--------------cccCCCEEEEE--EcCCCCEEEEEeCCCcE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------------EEHTQWITDVR--FSPSLSRLATSSADRTV 621 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl--------------~gH~~~ItsVa--fsPdg~~LaSgS~DgtV 621 (655)
|..|...++-+.|++=+ |+.|+++|+......... ......|...+ -...+...+.+...++|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88999988777666554 599999998765443311 11233344444 11334444444455588
Q ss_pred EEEECCC
Q 006229 622 RVWDTEN 628 (655)
Q Consensus 622 rVWDl~t 628 (655)
.||....
T Consensus 117 ~i~~~~~ 123 (275)
T PF00780_consen 117 LIYEWND 123 (275)
T ss_pred EEEEEEC
Confidence 8887764
No 435
>PHA02713 hypothetical protein; Provisional
Probab=48.62 E-value=1.6e+02 Score=34.37 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=32.3
Q ss_pred CCCEEEEEeCCC-----------------------cEEEEeCCCCe--EEEEecccCCCEEEEEEcCCCCEEEEEeCC--
Q 006229 566 DGKLLATGGHDK-----------------------KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSAD-- 618 (655)
Q Consensus 566 dG~lLaSgs~Dg-----------------------tVrIWDl~t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-- 618 (655)
+|++.+.||.++ +|..||..+.+ .+..+.........+. -++...+.|+.+
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~ 475 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDE 475 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCC
Confidence 688888888653 36677776532 2222211111111122 246666667654
Q ss_pred ----CcEEEEECCC
Q 006229 619 ----RTVRVWDTEN 628 (655)
Q Consensus 619 ----gtVrVWDl~t 628 (655)
..|..||..+
T Consensus 476 ~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 476 KNVKTCIFRYNTNT 489 (557)
T ss_pred CccceeEEEecCCC
Confidence 2467788875
No 436
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.97 E-value=82 Score=38.23 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-----eEEEEecccCC----------CEEEEEEcCCCCEEEEEeCCC
Q 006229 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 556 ~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-----~~l~tl~gH~~----------~ItsVafsPdg~~LaSgS~Dg 619 (655)
.+..+|+|+| +.+.||.....|...|||+... ..+.....+.+ .-..|+|.++...|+.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~- 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS- 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence 3577999999 6779999999999999999211 11111111222 23478898887888877654
Q ss_pred cEEEEECCCCeE
Q 006229 620 TVRVWDTENVRK 631 (655)
Q Consensus 620 tVrVWDl~tg~~ 631 (655)
.+.++|+++...
T Consensus 225 ~l~~~d~~~~~~ 236 (765)
T PF10214_consen 225 KLMLIDFESNWQ 236 (765)
T ss_pred ceEEEECCCCCc
Confidence 678888887654
No 437
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=47.54 E-value=55 Score=38.16 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=54.8
Q ss_pred CCeeEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECC-
Q 006229 556 SKVESCHFSPDGKL-LATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTE- 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~l-LaSgs--~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd----g~~LaSgS~DgtVrVWDl~- 627 (655)
.+|..++|. ||+- ++|.- ..|.+++=|. +.+..| .-|..|+|.|- ...|...-..+.|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 357788887 7774 44432 4555555442 334344 46889999994 3356666777899999886
Q ss_pred ----CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 628 ----NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 628 ----tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.+..-.|.-..-..+.--.|.|||.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk 123 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPK 123 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCC
Confidence 2233333333332233344568999984
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.41 E-value=2.6e+02 Score=30.15 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEEE--ec--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKST--LE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWD-l~t~~~l~t--l~--gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
....|.++.|++++.+.+.+ ..+.|++=+ ....+.-.. .. .-.-.|.+|+|.+++...++|+.. ++ +...+.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESST
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCC
Confidence 35679999999998876654 788888877 222222111 11 122238999999987777766554 33 445566
Q ss_pred CeEEEEE
Q 006229 629 VRKLTFI 635 (655)
Q Consensus 629 g~~v~~l 635 (655)
|+.-...
T Consensus 262 GktW~~~ 268 (302)
T PF14870_consen 262 GKTWQKD 268 (302)
T ss_dssp TSS-EE-
T ss_pred CccceEC
Confidence 6555443
No 439
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=45.97 E-value=2.5e+02 Score=33.62 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
.++|..|.|.++++.+++.-.+|.|.+||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 578999999999999999999999999999
No 440
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=45.85 E-value=2.5e+02 Score=31.99 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
...|++|.+|.|.++|..++. +|.||.||+.+.
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 456899999999999988885 999999999864
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=44.99 E-value=3e+02 Score=28.24 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCC------CcEEEE---eCC--CCeE-EEEeccc---------------------CCCEEE
Q 006229 556 SKVESCHFSPDGKLLATGGHD------KKAVLW---CTE--SFTV-KSTLEEH---------------------TQWITD 602 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~D------gtVrIW---Dl~--t~~~-l~tl~gH---------------------~~~Its 602 (655)
+.|..+.++.-|.+|+|-=.+ ..+|+| +.. .... ...+-|| ...+.|
T Consensus 60 ~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~c 139 (215)
T PF14761_consen 60 GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLC 139 (215)
T ss_pred hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCE
Confidence 779999999999999994322 256765 221 1111 1122232 345778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
++-+|-..-|+.|+.+ ++.||.+..
T Consensus 140 iaCC~~tG~LlVg~~~-~l~lf~l~~ 164 (215)
T PF14761_consen 140 IACCPVTGNLLVGCGN-KLVLFTLKY 164 (215)
T ss_pred EEecCCCCCEEEEcCC-EEEEEEEEE
Confidence 8888865556666554 888997753
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.80 E-value=1.1e+02 Score=34.93 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~----l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
..++|.++.||+|.+.||+--.|++|-+++.-.... ..+.+.-+..|...+|+.+ +-+|-.+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 456899999999999999999999999998732221 2222333445777888765 4444443
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=44.09 E-value=4.8e+02 Score=29.44 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..|+.-+.||++.|++-+.....+.+.+ .---..++|++....|++++.+..|..|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4788899999999999887655555543 222345677787888888888877777754
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=43.21 E-value=2.3e+02 Score=34.59 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=45.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCC--------CEEEEEEc----------------CCCCEEEEEeCCCcEE
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------WITDVRFS----------------PSLSRLATSSADRTVR 622 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~--------~ItsVafs----------------Pdg~~LaSgS~DgtVr 622 (655)
+..|+.++.++.|.-.|.++|+.+=.+.-... .+..|.+. .++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 34556666677777778888877655542211 12223332 1345888999999999
Q ss_pred EEECCCCeEEEEEe
Q 006229 623 VWDTENVRKLTFIC 636 (655)
Q Consensus 623 VWDl~tg~~v~~l~ 636 (655)
-.|.++|+.+-.|.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999998886553
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=42.89 E-value=1.5e+02 Score=33.72 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=64.8
Q ss_pred EEEeccCCCcEEEEe-cCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 508 FVDDGSLDDNVESFL-SPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 508 ~LasGS~D~tV~vW~-s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
-+..++.|+-|.-|+ +.++.. ..+..++.++-....|..+.=..+.+-+++-+..|++.++....
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~--------------p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~ 347 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQ--------------PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS 347 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCC--------------CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc
Confidence 456677889998884 333321 22233333333334444443333455677777778888776554
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
.+.+ .++.--..+..++|||.+.+|++- ..|.|+++.+++..
T Consensus 348 ~~~l-L~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 348 EKLL-LFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred Ccce-ehhhhhcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 4433 233334467789999999998874 45679999887653
No 446
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=42.19 E-value=4.3e+02 Score=30.14 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=44.6
Q ss_pred EcCCCCEEEEEe--CC----CcEEEEeCCCCeEEEEeccc---CCCEEEEEEcCCCCEEEEEeC----------------
Q 006229 563 FSPDGKLLATGG--HD----KKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSA---------------- 617 (655)
Q Consensus 563 fSpdG~lLaSgs--~D----gtVrIWDl~t~~~l~tl~gH---~~~ItsVafsPdg~~LaSgS~---------------- 617 (655)
.-|+|.+++|+- .+ +-+.+.|-++.+.+..++.. ...-+++-|.|..+.++|++.
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 346888888853 22 45778898989888888643 334678888898888888653
Q ss_pred ----CCcEEEEECCCCeEEEEEeccc
Q 006229 618 ----DRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 618 ----DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
..++.|||+.+.+.+.++.-..
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cccccCeEEEEECCCCcEeeEEecCC
Confidence 4579999999999988877653
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=42.07 E-value=3.1e+02 Score=33.14 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=47.6
Q ss_pred eeEEEEcC--CCCEEEEEeCCCcEEEEeCCC-------C-------------eEEEEecccCCCEEEEEEc--CCCCEEE
Q 006229 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA 613 (655)
Q Consensus 558 V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t-------~-------------~~l~tl~gH~~~ItsVafs--Pdg~~La 613 (655)
|+-+.... +...|+.|..||.|.+|.+++ . ++...+. ....++.|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55555444 455899999999999996531 0 0111222 34578999998 7778888
Q ss_pred EEeCCCcEEEEECC
Q 006229 614 TSSADRTVRVWDTE 627 (655)
Q Consensus 614 SgS~DgtVrVWDl~ 627 (655)
.++.-..|.||-..
T Consensus 182 VSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 182 VSSNSQEVTVFAFA 195 (717)
T ss_pred EecCCceEEEEEEe
Confidence 88888888888544
No 448
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=41.97 E-value=2.1e+02 Score=25.07 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
+|.+-.||..+++....+.+ -..-+.|++++|+.+|+.+=
T Consensus 36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 56677888888776544543 34678899999999766653
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=41.84 E-value=79 Score=32.37 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=39.2
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 006229 568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVW 624 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~--t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D------gtVrVW 624 (655)
.+|++ ...++|.+||+. ..+.+.+|.-- +.|..+.++..|+||+|-=.+ ..+|+|
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eEEEE-cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34443 445679999987 45667777633 789999999999999985432 256665
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.79 E-value=2.3e+02 Score=26.97 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=42.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC--------eEEEEecccCCCEEEEE---EcCC--CCEEEEEeCCCcEEEEEC
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVR---FSPS--LSRLATSSADRTVRVWDT 626 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~--------~~l~tl~gH~~~ItsVa---fsPd--g~~LaSgS~DgtVrVWDl 626 (655)
.-.|.....-|+++..-++|.|.+.... ..+..|. -...|++|+ |.|+ ...|+.|+. ..|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3455555557778888888888876533 2333333 455677765 4332 345666654 48899999
Q ss_pred CCCe
Q 006229 627 ENVR 630 (655)
Q Consensus 627 ~tg~ 630 (655)
.+..
T Consensus 81 ~~N~ 84 (136)
T PF14781_consen 81 ENNS 84 (136)
T ss_pred ccCc
Confidence 8643
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=41.58 E-value=99 Score=35.59 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
...++|.||..|-||+||.-.-+....+.+-...|..|..+.+|.+|+..|.. .+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34489999999999999987767777788888999999999999987766654 66677765
No 452
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=40.62 E-value=3.1e+02 Score=29.92 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=48.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC----C----------------CcEEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----D----------------RTVRVWD 625 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~----D----------------gtVrVWD 625 (655)
+|++-++-+..+.|..+|.++|+...... -.+....++|. |++++.|-. + .-|.|-|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid 288 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID 288 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence 78888888888999999988775433221 33455677777 777654432 2 2266779
Q ss_pred CCCCeEEEEEecccc
Q 006229 626 TENVRKLTFICCYKC 640 (655)
Q Consensus 626 l~tg~~v~~l~~~~~ 640 (655)
+++|..++.+.-...
T Consensus 289 l~tG~vv~~l~feg~ 303 (335)
T TIGR03032 289 LNSGDVVHWLRFEGV 303 (335)
T ss_pred CCCCCEEEEEEeCCc
Confidence 999999988765443
No 453
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=40.20 E-value=4.8e+02 Score=27.66 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=32.0
Q ss_pred eeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEE
Q 006229 545 FTEFQLIPAST-SKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKST 592 (655)
Q Consensus 545 ~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~Dg--tVrIWDl~t~~~l~t 592 (655)
++.+.++.... .-.-.+.|..+|.++-+.|.-| .|+.+|+.+++.+..
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~ 83 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS 83 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE
Confidence 34555554222 2344777877888888888766 799999999876543
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=40.17 E-value=5e+02 Score=27.86 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=42.3
Q ss_pred eeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEEEEec---------------ccCCCEEEEEEcCCCCEEEEEe
Q 006229 558 VESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLE---------------EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~D------gtVrIWDl~t~~~l~tl~---------------gH~~~ItsVafsPdg~~LaSgS 616 (655)
..+|++.++|.++++.=.+ ..|+.+|.. |+.+..+. .....+-+|+++|+|+.|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4477887788888887777 788888876 65544441 1344578999999999777665
Q ss_pred C
Q 006229 617 A 617 (655)
Q Consensus 617 ~ 617 (655)
.
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 4
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.93 E-value=2e+02 Score=36.66 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC----CCC----eE----------------EEEec-ccCCCEEEEEEcCCC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT----ESF----TV----------------KSTLE-EHTQWITDVRFSPSL 609 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl----~t~----~~----------------l~tl~-gH~~~ItsVafsPdg 609 (655)
...|+|+....+|+.|++|-.| .||.+ ..+ +| +-.+. +|.+.|..+..+-.-
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 4568899977799888776655 45532 111 01 11223 578899999999888
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 006229 610 SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~t 628 (655)
..+.+-+..++|++||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999975
No 456
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=38.93 E-value=2.8e+02 Score=29.36 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++..-.=.++++.+||.++.+.+.++. ....=+.++ .++..|+.+....+|+++|..+.+.++.+...
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 344444567899999999999999886 344556666 35666666655668999999888777766544
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=37.54 E-value=4.3e+02 Score=32.14 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=69.5
Q ss_pred CCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCC
Q 006229 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (655)
Q Consensus 478 ~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~ 557 (655)
++.+...+.|+|... ..+|..-..|+..+|+.......+....+......+.. ... ....+.
T Consensus 144 gg~~~aDv~FnP~~~--------------~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d-~~e~s~ 205 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQ--------------RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFD-PEELSN 205 (765)
T ss_pred CCCccceEEeccCcc--------------ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCC-CcccCc
Confidence 445566666666333 34565667789999976222111111111111111100 000 011255
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN 628 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~--tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~t 628 (655)
...|.|.++.+.|+.++. ..+.++|+++..... ........|.+|.-+|+.. +++.- ....|.+.|+..
T Consensus 206 w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 206 WKRILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred ceeeEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 668999888887777665 667888998775533 1223556788888887622 22221 224566666665
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=37.31 E-value=66 Score=34.25 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCe
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRTVRVWDTENVR 630 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS------~DgtVrVWDl~tg~ 630 (655)
+..|++||+.+.+=...-.+-.+.|++|.|..+..+++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 45699999887655544456678899999997777777775 34568899987653
No 459
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=37.20 E-value=1.2e+02 Score=33.24 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=33.6
Q ss_pred eeEEeecCCCCCeeEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEecc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGK-LLATG-GHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~-lLaSg-s~DgtVrIWDl~t~~~l~tl~g 595 (655)
+.++++.. ...|.+|.++.|.+ +|++. ..++.|.|||..+|+.++++++
T Consensus 280 krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 280 KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 45555542 13577999999777 66554 4689999999999999999874
No 460
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=37.03 E-value=23 Score=41.47 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=51.7
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEE-------Eeccc-----CCCEEEEEEcCCCC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKS-------TLEEH-----TQWITDVRFSPSLS 610 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~-------tl~gH-----~~~ItsVafsPdg~ 610 (655)
.+..++.++.|+.+|..++|.+.|.+|++++..|. |.++.+ .+.+. ++..| ...|-.+||+....
T Consensus 304 S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi--met~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~ 381 (788)
T KOG2109|consen 304 SFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI--METVCTVNVSDQSLVVSPRANTAAVIQDICFSEVST 381 (788)
T ss_pred chhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe--ccccccccccccccccchhcchHHHHHHHhhhhhcc
Confidence 44567788899999999999999999999987653 444433 22221 11222 12355788888888
Q ss_pred EEEEEeCCCc
Q 006229 611 RLATSSADRT 620 (655)
Q Consensus 611 ~LaSgS~Dgt 620 (655)
+++.+|.+|+
T Consensus 382 ~r~~gsc~Ge 391 (788)
T KOG2109|consen 382 IRTAGSCEGE 391 (788)
T ss_pred eEeecccCCC
Confidence 8888887764
No 461
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.54 E-value=1.5e+02 Score=35.81 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.9
Q ss_pred CCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 006229 553 ASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 553 gH~~~V~sl~fSpd---G~lLaSgs~DgtVrIWDl~t 586 (655)
.+...|..+.|+|. +..|+.=..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 34567999999995 46888888899999999964
No 462
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=34.95 E-value=6.2e+02 Score=31.68 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=62.0
Q ss_pred CcEEEeccCCCcEEEE-ecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE--
Q 006229 506 DRFVDDGSLDDNVESF-LSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW-- 582 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW-~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW-- 582 (655)
+++++.|.|+..+.+. ..+|... ..........-...|.-..|--|..+|.++..||.+.-+
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~---------------~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLIL---------------ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcce---------------eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 3588899888877665 3333310 000101111122346667777778899999999998865
Q ss_pred eCCCCeEEEEec--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 583 CTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 583 Dl~t~~~l~tl~--gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
|..++..-..-+ =-+.++.-=.|+..++.-+-+..|+-.-+|..+..
T Consensus 613 d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k 661 (1096)
T KOG1897|consen 613 DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK 661 (1096)
T ss_pred EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc
Confidence 445553321111 12345555566666666666666777777765543
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=34.93 E-value=1.5e+02 Score=33.82 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=27.0
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 596 H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
.-..-+.|+|.|||++|++--..|+|++++..++.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 44566889999999888777657999999876543
No 464
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=34.88 E-value=53 Score=28.44 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Q 006229 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (655)
Q Consensus 11 ~L~~yIydyl~k~~~~~tA~~f~~e~~~~~~ 41 (655)
++|.-|-|||-=+||.=|+.-|..|++.+..
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 6799999999999999999999999998754
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.45 E-value=5.5e+02 Score=27.31 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=46.0
Q ss_pred CCCeeEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEecc-----cCCCEEEEEEcC-CCC-EEEEEe-CCC-
Q 006229 555 TSKVESCHFSPDGKLLATGG------HDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSP-SLS-RLATSS-ADR- 619 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs------~DgtVrIWDl~t~~~l~tl~g-----H~~~ItsVafsP-dg~-~LaSgS-~Dg- 619 (655)
.+.|+++.|..+..+++.|. ....+..||..+..- ..+.+ -.+.|+.+.+.. |+. +.+.|. .++
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~ 114 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGS 114 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCC
Confidence 46799999997777777775 356688999876542 23333 236788887743 333 333333 333
Q ss_pred -cEEEEECCCCe
Q 006229 620 -TVRVWDTENVR 630 (655)
Q Consensus 620 -tVrVWDl~tg~ 630 (655)
.|..||=.+..
T Consensus 115 ~~l~~~dGs~W~ 126 (281)
T PF12768_consen 115 TFLMKYDGSSWS 126 (281)
T ss_pred ceEEEEcCCceE
Confidence 47777654433
No 466
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.08 E-value=44 Score=38.99 Aligned_cols=20 Identities=35% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHhhhhhccCCCCcccccC
Q 006229 370 QQQQLQHYSHHPLSSQQSQN 389 (655)
Q Consensus 370 q~qqqqq~qQ~~~~~qq~q~ 389 (655)
|+|||||+||+++.|.++.+
T Consensus 73 ~~~~~~~~~~~~~~P~~~~~ 92 (1179)
T KOG3648|consen 73 QQQQQQQQQQQQLQPPQPPF 92 (1179)
T ss_pred HHHHHHHHHHHhhCCCCCCc
Confidence 33444444444444444433
No 467
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=33.99 E-value=1.4e+02 Score=31.98 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-CEE----EEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WIT----DVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-~It----sVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.|++|....+|.+|+|.=.-.+|.+.|-.+|+.+-.+.|-.. ... ..+|=.+-+++-.+..+++|.|+|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 378888889999999999989999999999999888876522 111 1333334455555567888888886
No 468
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=31.82 E-value=93 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=20.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
..++.++.|+.+...|.++|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3678888999999999998876643
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=31.49 E-value=6e+02 Score=27.46 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=40.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
+|+ |+.++.|+.+...|.++|+.+-...... -.+..-.+-.+ ..++.++.|+.+.--|..+|+.+-.
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEE
Confidence 676 7778888888888998888877766554 11111112222 2344444667777777777766444
No 470
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=31.11 E-value=1.7e+02 Score=37.31 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CceeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l 551 (655)
|+-++..-.+.++++.+. ..+.-...++.|++. .-+...|--..-......+...
T Consensus 535 PT~LaV~Pmdnsl~Vld~-----------------nvvlrit~~~rV~Ii--------~GrP~hC~~a~~t~~~skla~H 589 (1899)
T KOG4659|consen 535 PTSLAVDPMDNSLLVLDT-----------------NVVLRITVVHRVRII--------LGRPTHCDLANATSSASKLADH 589 (1899)
T ss_pred ccceeecCCCCeEEEeec-----------------ceEEEEccCccEEEE--------cCCccccccCCCchhhhhhhhh
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeC------------CCcEEEE---------------eCCCCeEEEEecccCCCEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGH------------DKKAVLW---------------CTESFTVKSTLEEHTQWITDVR 604 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~------------DgtVrIW---------------Dl~t~~~l~tl~gH~~~ItsVa 604 (655)
..|... .+|+|+++|.+.++-+. ||+|.+. |.-+++-...-.+|-..+.+||
T Consensus 590 ~tl~~~-r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala 668 (1899)
T KOG4659|consen 590 RTLLIQ-RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA 668 (1899)
T ss_pred hhhhhh-hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE
Q ss_pred EcCCCCEEEEEeCCCcEE
Q 006229 605 FSPSLSRLATSSADRTVR 622 (655)
Q Consensus 605 fsPdg~~LaSgS~DgtVr 622 (655)
.+|||..++.-+..-.||
T Consensus 669 VsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 669 VSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred ECCCCcEEEecCCchhhh
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=30.40 E-value=2e+02 Score=25.09 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 006229 598 QWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (655)
Q Consensus 598 ~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~ 627 (655)
..-+.|.++|++++|+.++ .++.|++|..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3456788999999877666 57889999865
No 472
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=30.31 E-value=1.3e+02 Score=36.38 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=52.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----cc---------------cCCCEEEEEEcCCCCEEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EE---------------HTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl----~g---------------H~~~ItsVafsPdg~~LaSg 615 (655)
...|.+|+...-+..|+.+-.||+|.+.|..+.+.+... .. +-..+..|+|||++.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356888888888889999999999999999887655444 10 11234458899999999999
Q ss_pred eCCCcEE
Q 006229 616 SADRTVR 622 (655)
Q Consensus 616 S~DgtVr 622 (655)
..||.++
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999876
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=29.40 E-value=5.6e+02 Score=27.11 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=51.0
Q ss_pred eeEEEEcCCCC-EEEEEeC-----------CCcEEEEeCCCCeEEEEecc------cCCCEEEEEEcCCC-----CE-EE
Q 006229 558 VESCHFSPDGK-LLATGGH-----------DKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSL-----SR-LA 613 (655)
Q Consensus 558 V~sl~fSpdG~-lLaSgs~-----------DgtVrIWDl~t~~~l~tl~g------H~~~ItsVafsPdg-----~~-La 613 (655)
|..+....+++ |++=.|. .-+|.+||+.+.+.++++.= ..+.++++++.... .+ .+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 55666666666 3332221 13788999999998887742 24568888887632 23 33
Q ss_pred EEeCCCcEEEEECCCCeEEEEEec
Q 006229 614 TSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
|=+..+-|.|+|+.+++..+.+..
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETC
T ss_pred eCCCcCcEEEEEccCCcEEEEecC
Confidence 444456899999999988776654
No 474
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.66 E-value=4.9e+02 Score=29.11 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=47.3
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
++|..+..|+.-.+|.. ++.++ ++..+.... .......++++.+.|+-...++.|+-.|++
T Consensus 49 kllF~s~~dg~~nly~l--------------DL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLL--------------DLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp EEEEEE-TTSS-EEEEE--------------ETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEeccCCCcceEEE--------------EcccC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 66777777777766622 12221 233333322 222346677888887766677889999999
Q ss_pred CCeEEEEecccCCCEEEEEEc--CCCCEEE
Q 006229 586 SFTVKSTLEEHTQWITDVRFS--PSLSRLA 613 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafs--Pdg~~La 613 (655)
+.+....+.-..+.+-...|. .+++.++
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred cCcEEEEEECCcccccccceeeCCCccEEE
Confidence 988766666666666556664 3555554
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=28.46 E-value=2.7e+02 Score=30.27 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecccCC-----CEEEEEEcCCCCE------------EEEEe
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQ-----WITDVRFSPSLSR------------LATSS 616 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~-------t~~~l~tl~gH~~-----~ItsVafsPdg~~------------LaSgS 616 (655)
|+|+|.+.+-++...-++..+||.. ...++-++..-.. ..+-+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Q ss_pred CCCcEEEEE
Q 006229 617 ADRTVRVWD 625 (655)
Q Consensus 617 ~DgtVrVWD 625 (655)
+||+|.=|.
T Consensus 108 EdGTisaW~ 116 (336)
T TIGR03118 108 EDGTLSGWA 116 (336)
T ss_pred CCceEEeec
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.43 E-value=3.3e+02 Score=26.39 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 006229 556 SKVESCHFSPDG------KLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 556 ~~V~sl~fSpdG------~lLaSgs~DgtVrIWDl~t 586 (655)
..|.+++|||-| -+|++-..++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999933 2788889999999998654
No 477
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.61 E-value=1.4e+02 Score=32.05 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=36.1
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+.|-+..|.++.|+|+.+.|++......-.||=..+|..++++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP 124 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP 124 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec
Confidence 45666669999999999999999988888888777788777654
No 478
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=26.05 E-value=3.8e+02 Score=33.36 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=52.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
+.|.++..- +|++||.- ...|||++..+.+.++.-..|...+..+.+.-.|..++.|..=+.|.+--.+
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 455555433 57777654 5699999999888887777888999999999899999999877776665443
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=25.30 E-value=1.3e+02 Score=36.08 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..+++|.-+|.|..+++++.|+.|++|+....+....++... +-..+.|. +.-|+++..|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~-p~~nlv~t--nhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK-PKENLVFT--NHGLVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC-Cccceeee--ccceEEEeccchhheeec
Confidence 346788888999999999999999999976544322222111 11223343 233666667777777753
No 480
>PHA03098 kelch-like protein; Provisional
Probab=24.91 E-value=4.5e+02 Score=29.96 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCCEEEEEeCCC--------cEEEEeCCCCe--EEEEecccCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 006229 566 DGKLLATGGHDK--------KAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENV 629 (655)
Q Consensus 566 dG~lLaSgs~Dg--------tVrIWDl~t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-----gtVrVWDl~tg 629 (655)
++++++.||.+. .+.+||..+.+ .+..+.........+.+ +++.++.|+.+ ..|.++|..+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 577777777532 37788887643 22222111111122222 56777777754 46888888754
No 481
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.51 E-value=97 Score=34.38 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=28.4
Q ss_pred cchHHHHH-HHHHHHHHHhcChHHHHHHHHHhcCCCCC
Q 006229 5 NWEADKML-DVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (655)
Q Consensus 5 ~~~~~~~L-~~yIydyl~k~~~~~tA~~f~~e~~~~~~ 41 (655)
-|..+..+ |.-|-.||.+.|+.+.|..|.+|+++..+
T Consensus 111 v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~ 148 (394)
T KOG2817|consen 111 VDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED 148 (394)
T ss_pred cChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc
Confidence 45555544 76666667777999999999999998765
No 482
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=24.17 E-value=9.1e+02 Score=25.92 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=46.8
Q ss_pred eEEeecCCCCCeeEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEE----EEecccCCCEEEEEEcCCCCEEEEE
Q 006229 547 EFQLIPASTSKVESCHFSP-------DGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSp-------dG~lLaSgs~DgtVrIWDl~t~~~l----~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
++..+..| ..++.+.|.. .|.+|++.-..+.|...++++...+ ..+.+....+.+|++.|||.++++-
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 44555555 5577777764 4556666665677777777644322 1233455589999999999998888
Q ss_pred eCCCcEE
Q 006229 616 SADRTVR 622 (655)
Q Consensus 616 S~DgtVr 622 (655)
..+|.|.
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 8888864
No 483
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=24.09 E-value=3.1e+02 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=14.2
Q ss_pred CeeEEEEcCCCCEEEEEeC
Q 006229 557 KVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~ 575 (655)
.+.++++-|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3567788888888888753
No 484
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.39 E-value=1.3e+02 Score=37.09 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=57.2
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-EEEEE------Ec-CCC-C----EEEEEeCCCcEEEEE
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVR------FS-PSL-S----RLATSSADRTVRVWD 625 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-ItsVa------fs-Pdg-~----~LaSgS~DgtVrVWD 625 (655)
..++.||+|.+.|+...=+.|-+.|+..+-.++.++|..+. |.-|. ++ +.. + +++-+=.-|.+-||.
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEVW~ 404 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEVWQ 404 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHHHH
Confidence 46888999999999888889999999888777778877654 21111 01 211 1 122344577889999
Q ss_pred CCCCeEEEEEecccc
Q 006229 626 TENVRKLTFICCYKC 640 (655)
Q Consensus 626 l~tg~~v~~l~~~~~ 640 (655)
+.+|-.+..|.+...
T Consensus 405 ~q~gpRV~AfnV~Ks 419 (1244)
T KOG2727|consen 405 MQTGPRVLAFNVAKS 419 (1244)
T ss_pred hccCCeEEEEecCCc
Confidence 999999888876543
No 485
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=2.3e+02 Score=34.13 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=36.6
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
-.|+|+++. |..+.++..-...+-.+.|+.+ ..|+....||+|+||++.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecc
Confidence 457888864 5666555544458888999865 567777899999999986
No 486
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=23.00 E-value=90 Score=39.19 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=4.9
Q ss_pred hhhhhcccccc
Q 006229 275 RSGLLQQQKSL 285 (655)
Q Consensus 275 ~~~~~~~~~~~ 285 (655)
++|| +|.+||
T Consensus 2014 ~qgl-~q~~~~ 2023 (2131)
T KOG4369|consen 2014 KQGL-AQQSFM 2023 (2131)
T ss_pred hccc-cCCCCC
Confidence 3444 344566
No 487
>PHA03098 kelch-like protein; Provisional
Probab=22.57 E-value=6.4e+02 Score=28.72 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeE--EEEecccCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCC
Q 006229 566 DGKLLATGGHD-----KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENV 629 (655)
Q Consensus 566 dG~lLaSgs~D-----gtVrIWDl~t~~~--l~tl~gH~~~ItsVafsPdg~~LaSgS~D------gtVrVWDl~tg 629 (655)
++++++.||.+ ..+.+||..+.+= +..+. +...-.+++. -++..++.||.+ ..|.+||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 67888888876 3466788765432 11111 1111111222 246666666632 35788887753
No 488
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=22.37 E-value=55 Score=34.71 Aligned_cols=51 Identities=4% Similarity=-0.317 Sum_probs=31.9
Q ss_pred HHHHHHHHhcChHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhc
Q 006229 14 VYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART 67 (655)
Q Consensus 14 ~yIydyl~k~~~~~tA~~f~~e~~~~~~~~~~d~~~~fL~EWw~~FWd~f~a~~ 67 (655)
.|.|.||.+-.-+..+--|+-+...... ++--+.|++.||+.||+.|.+..
T Consensus 46 weknitlge~p~FLhsWWcvFwDLYcAA---PeRRd~c~HSsEAKaFhdys~~a 96 (354)
T KOG4594|consen 46 WEKNITLGEPPGFLHSWWCVFWDLYCAA---PERRDTCEHSSEAKAFHDYSAAA 96 (354)
T ss_pred HhhhhhccCCcchhhhhHHHHHHHhhcC---ccccCcccccHhhhhhhhhhccc
Confidence 4555566666555555555555433322 23334599999999999997644
No 489
>PRK13684 Ycf48-like protein; Provisional
Probab=22.33 E-value=5.9e+02 Score=27.45 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=46.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc----cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g----H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
...++++.+.+++++++.| ..+.+++=..+.+..-....- -...++++.|.+++..++ ++.+|.|. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC
Confidence 3568899999999877665 457765433444433222211 123578899999877555 55667654 4445554
Q ss_pred EEEEE
Q 006229 631 KLTFI 635 (655)
Q Consensus 631 ~v~~l 635 (655)
....+
T Consensus 291 tW~~~ 295 (334)
T PRK13684 291 TWEKD 295 (334)
T ss_pred CCeEC
Confidence 44433
No 490
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=1e+03 Score=25.91 Aligned_cols=70 Identities=11% Similarity=-0.010 Sum_probs=50.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
-.++.. .|++...+..|--..+.|+.+. .+...+..-...-..++.| |++-..+..|+-+.|-|+.++..
T Consensus 131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence 345555 4999999997777778888643 3334444455555677776 88888999999999999987543
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.25 E-value=1.8e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=13.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEE
Q 006229 601 TDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 601 tsVafsPdg~~LaSgS~DgtVrV 623 (655)
..|+++++|..+++=+...+|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666666666666555555554
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=20.93 E-value=8.6e+02 Score=27.71 Aligned_cols=78 Identities=19% Similarity=0.136 Sum_probs=43.3
Q ss_pred EEEEcCCCCEEEEEe--------------CCCcEEEEeCCCCeEEEEec--ccC-------------------------C
Q 006229 560 SCHFSPDGKLLATGG--------------HDKKAVLWCTESFTVKSTLE--EHT-------------------------Q 598 (655)
Q Consensus 560 sl~fSpdG~lLaSgs--------------~DgtVrIWDl~t~~~l~tl~--gH~-------------------------~ 598 (655)
.+.+-|+|++|+.+. .|. |..+| .+|+.+..+. .|- -
T Consensus 194 D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 194 DIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp -EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred ccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 466778888888777 222 44445 5666555432 121 1
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEeccc
Q 006229 599 WITDVRFSPSLSRLATSSADR-TVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~tg~~v~~l~~~~ 639 (655)
-+++|.+.+....|+.++..- .|-..|.++++..-.+..+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 278999999555555555544 78888988887766665543
No 493
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=20.48 E-value=2.4e+02 Score=32.83 Aligned_cols=30 Identities=27% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCeEEEEecc-cCCCEEEEEEcCCCCEEEEE
Q 006229 586 SFTVKSTLEE-HTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 586 t~~~l~tl~g-H~~~ItsVafsPdg~~LaSg 615 (655)
+++..+.+.+ ....|+.++|+||++.|+..
T Consensus 489 ~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 489 TGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 4444444443 45679999999999988764
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=3.5e+02 Score=27.94 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=37.6
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEe
Q 006229 566 DGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 566 dG~lLaSgs~--DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l~ 636 (655)
+|+++.+.+. ...||+||+++++.+.+-.-..+.+..--...-+.++.--. .||...++|.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 5677887765 45799999999887654431111111100011122222222 36666677777666665543
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.19 E-value=6.9e+02 Score=27.94 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=39.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
...+..++||.+++.+..-..++-||--.. -.... ..-...++++.|.+++..++.+ .+|.| +|....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCC
Confidence 445567788887777665544555554221 01112 2234568999999998877665 55554 3444333
No 496
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.12 E-value=2.7e+02 Score=19.83 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=23.4
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.++.++.||.|.-.|+++|+.+-.+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666899999999999999887776543
Done!