BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006231
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + + GW+ L A S + I ++++H
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q+ G +A +I +E +A I+
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + + G + L A I ++++H
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
DTPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
DTPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
N TPLHLA + G ++L+ AGAD + Q++ G +A +I + E +A I+
Sbjct: 38 NGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA K G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + + G + L A + I ++++H
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + + G + L A I ++++H
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA + G E+L+ AGAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 98
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 131
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA + G E+L+ AGAD + Q++ G +A +I + E +A I+
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
N TPLHLA + G ++L+ AGAD Q++ G +A +I + E +A I+
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA + G E+L+ AGAD + Q++ G + AI + E IA ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 86
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 119
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA K G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA + G E+L+ GAD + + G++ L A
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA + G E+L+ AGAD + Q++ G + AI E IA ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 86
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
TPLHLA + G E+L+ AGAD + +++ G++ L + +RE + ++ V
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH--LAAREGHLEIVEV 119
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 31 AGLPRLS-----NPAEIRTEMASLAEEEKXXXXXXXXXXXXVPNRD--TPLHLAVKLGDE 83
AG PR + NP + + A E E PN + T LH A+ +
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67
Query: 84 TATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+ + L+ AGA+ + + GW+ L A + I M +V+H
Sbjct: 68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + + G++ L A I ++++H
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA +G E+L+ GAD + ++ GW+ L A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA G E+L+ GAD + Q+ G + L A I ++++H
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA K G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA +G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA K G E+L+ GAD + + G + L A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
N TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 112 NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA G E+L+ GAD + +++ G + L A
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+T LH+A GD + E L+ G+D ++++ GW+ L EA + ++++H
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA +LG E+L+ GAD + ++ G + L A I ++++H
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
DTPLHLA ++G E+L+ GAD + + G + L A
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
DTPLHLA G E+L+ GAD + + G++ L A
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA + G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHL V G E+L+ AD + ++ GW+ L A
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA G E+L+ GAD + + QG++ L A
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
+++T LH AV G+ T +L+ AGA+ QN +G SAL A
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 12 SPVHKAIAMRDYPSLRRLL--AGLPRLSN-PAEIRTEMASLA---EEEKXXXXXXXXXXX 65
+P+H A M P ++ LL P +SN E MA+ A E K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 66 XVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
+ TPLH A ++G ++L+ A+ +L G + L I +RE + ++
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH--IAAREGHVETVL 130
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA + G +L+ A+ +L N+ G + L +A ++++H
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
N TPLHLA LG E+L+ GAD + ++ G + L A I ++++H
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPL+LA G E+L+ GAD + Q++ G +A +I E +A I+
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
+TPLHL G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA LG E+L+ GAD + G + L A + I ++++H
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVR 124
T LHLA LG+ + E L AGA + G +AL A R A ++++
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRHYQP 128
TPLHLAV+ + E+L+ AGAD + + G + L A+ +A ++ H P
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVR 124
T LHLA LG+ + E L AGA + G +AL A R A ++++
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRHYQP 128
TPLHLAV+ + E+L+ AGAD + + G + L A+ +A ++ H P
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
N TPLHLA + G ++L+ AGAD + +++ G + L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
N TPLHLA + G ++L+ AGAD + +++ G + L A
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
N TPLHLA + G ++L+ AGAD + +++ G + L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
N TPLHLA + G ++L+ AGAD + +++ G + L A
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
N TPLHLA + G ++L+ AGAD + +++ G + L A
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMII 122
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A I+
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
TPLHLA K G E+L+ GAD + + G + L A + I ++++H
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEA 110
TPLHLA G E+L+ GAD + ++ +G++ L A
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIA 119
TPLHLA G E+L+ GAD + Q++ G +A +I + E +A
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 77 AVKLGDETATEMLMVAGADWSLQNEQG-WSALQEAICSREEGIAMIIVRH-YQPLAWAKW 134
AV+ D + L+ GA+ + Q E+G W+ L A+ E I +++RH P+ K
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 135 CRR---LPRLVGTMRRMRDFYMEITFNFESSVIPFISRIAPSDTYKI------WKRGANL 185
L + G+++ ++ F + E F + + + K+ +KRGAN+
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 73 PLHLAVKLGDETATEMLMVAG---ADWSLQNEQGWSALQEAICSREEGIAMIIVRHY 126
PLH A +G E+L G +W Q++QGW+ L A+ A+++V Y
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 73 PLHLAVKLGDETATEMLMVAG---ADWSLQNEQGWSALQEAICSREEGIAMIIVRHY 126
PLH A +G E+L G +W Q++QGW+ L A+ A+++V Y
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 73 PLHLAVKLGDETATEMLMVAG---ADWSLQNEQGWSALQEAICSREEGIAMIIVRHY 126
PLH A +G E+L G +W Q++QGW+ L A+ A+++V Y
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKY 197
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
+PLH+A G + + L+V GA + N+ G + L A IA++++
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 77 AVKLGDETATEMLMVAGADWSLQNEQG-WSALQEAICSREEGIAMIIVRHYQPLAWAKWC 135
AV+ D + L+ GA+ + Q E+G W+ L A+ E I +++RH K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 136 RRLPRLV----GTMRRMR------------DFYMEITFNFESSVIPFISRIAPSDTYKIW 179
P L+ G+++ ++ DFY F E++V + + ++
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKF-----LY 125
Query: 180 KRGANL 185
KRGAN+
Sbjct: 126 KRGANV 131
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 50 AEEEKXXXXXXXXXXXXVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQG 103
AEE K + +TPLHLA K G ++L+ GAD + +++ G
Sbjct: 22 AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIV 123
+PLH+A G + + L+V GA + N+ G + L A IA++++
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 72 TPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+PLHLA + G + TE+L+ AG + + + L A I ++++H
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
N TPL AV +ML+ +GAD +++ + G++++ A+ + +I H
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
N TPL AV +ML+ +GAD +++ + G++++ A+ + +I H
Sbjct: 117 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
N TPL AV +ML+ +GAD +++ + G++++ A+ + +I H
Sbjct: 99 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+TPL A G +L+ GA + N +G +AL EA+ + + +++ H
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH 207
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEG 117
+TPL LAV L AGAD ++ N+ SAL +A +R+ G
Sbjct: 167 NTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFG 213
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 70 RDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+ TPLH A + E L+ GAD +++ G L A +A ++V+H
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 70 RDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+ TPLH A + E L+ GAD +++ G L A +A ++V+H
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 70 RDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+ TPLH A + E L+ GAD +++ G L A +A ++V+H
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 71 DTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQEAICSREEGIAMIIVRH 125
+T LHLA + A + L+ AGAD + Q+ G + L A+ + G+ I++R+
Sbjct: 52 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 106
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQ 108
N T LHLAV L + +L+ GAD + QG+S Q
Sbjct: 147 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 186
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 69 NRDTPLHLAVKLGDETATEMLMVAGADWSLQNEQGWSALQ 108
N T LHLAV L + +L+ GAD + QG+S Q
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 189
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 94 ADWSLQNEQGWSALQEAICSREEGIAMIIVRHYQP 128
AD++L+ E S+LQEA+ + E G ++++ +++P
Sbjct: 192 ADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKP 226
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 94 ADWSLQNEQGWSALQEAICSREEGIAMIIVRHYQP 128
AD++L+ E S+LQEA+ + E G ++++ +++P
Sbjct: 194 ADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKP 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,604,352
Number of Sequences: 62578
Number of extensions: 758334
Number of successful extensions: 1964
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 192
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)