BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006232
(655 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/466 (46%), Positives = 284/466 (60%), Gaps = 31/466 (6%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VHGPG+DIDTLCVGP+H R DFF +L +L PE+TE V DA VP
Sbjct: 130 IFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSDILKVHPEITEFTTVKDAFVP 188
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNADEQTVRSLNGCRVTDQILRLV 127
V+ FSG+ IDL+YA+L+L IPE+L D+ +S L+N DE+++ SLNGCRVTDQIL+LV
Sbjct: 189 VITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILSLNGCRVTDQILKLV 248
Query: 128 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFR 187
P I NFR LRC++ WA RRG+YSN+ GFLGG++WALL ARICQLYPN+ PS ++ RFF+
Sbjct: 249 PNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLYPNSAPSTIIHRFFK 308
Query: 188 VYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTST 246
VY W+WP P+LLC I+EG LG +VW+P+R DK HLMPIITPAYP MNS+YNVS ST
Sbjct: 309 VYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNSTYNVSKST 365
Query: 247 LRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWK 306
L++M EF RG EI +E E W L E FF Y Y+ ID + N +D R W+
Sbjct: 366 LQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFYIEIDCYSMNEEDSRKWE 423
Query: 307 GWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SKP--LYCSYFMGLQRKQGVPV 360
GW+ES+LR L +E T M P+P F++ + P + S+FMGL
Sbjct: 424 GWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANNPDQICTSFFMGLSFNFSNTP 482
Query: 361 GEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRNLPNFVFPGGVRPSRPSK 417
G + D+ V EF + + +P M I V ++ ++ LP FV G P P K
Sbjct: 483 GADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEG--PEEPVK 540
Query: 418 GTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHAT 463
T +K SS +P A ++K +N D L + K T
Sbjct: 541 TT--------KKRSSTGEPSA---TRKKLKSENSDNKLNSPKSPIT 575
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 362 bits (929), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 254/406 (62%), Gaps = 14/406 (3%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L + L V DA VP
Sbjct: 96 IFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVP 154
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D + +RSLNGCRVTD+IL LVP
Sbjct: 155 VIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVP 214
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
+ FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR CQLYPNA S LV +FF V
Sbjct: 215 NKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLV 274
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVSTST
Sbjct: 275 FSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRT 334
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + SA ++ W G
Sbjct: 335 VMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGL 392
Query: 309 VESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +ER+ + L H +P F K +F+G+ ++ V E
Sbjct: 393 VESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRR-VENAES 450
Query: 364 EQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 405
D+ ++ F V + + K GM+I HV ++ L +++
Sbjct: 451 VNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 362 bits (929), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 255/406 (62%), Gaps = 14/406 (3%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L + L V DA VP
Sbjct: 96 IFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVP 154
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D + +RSLNGCRVTD+IL LVP
Sbjct: 155 VIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVP 214
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
+ FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR CQLYPNA S LV +FF V
Sbjct: 215 NKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLV 274
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVSTST
Sbjct: 275 FSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRT 334
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + SA ++ W G
Sbjct: 335 VMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGL 392
Query: 309 VESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +ER+ + L H +P F K+ +F+G+ ++ V E
Sbjct: 393 VESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKANNYVSMWFLGIIFRR-VENAES 450
Query: 364 EQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 405
D+ ++ F V + + K GM+I HV ++ L +++
Sbjct: 451 VNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 187/405 (46%), Positives = 254/405 (62%), Gaps = 20/405 (4%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L EV +L V +A VP
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVP 155
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 156 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 215
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLV 275
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 276 FSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRM 335
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G
Sbjct: 336 VMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGL 393
Query: 309 VESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +E++ + L Q P P + D+ + + +GL K+ E
Sbjct: 394 VESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREE-FRTMWVIGLVFKK-TENSEN 451
Query: 364 EQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRNL 401
D+ ++ F +QA++ M+ L M+I+ HV R+ L
Sbjct: 452 LSVDLTYDIQSFTDTVYRQAINSKMFEL---DMKIAAMHVKRKQL 493
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 188/411 (45%), Positives = 252/411 (61%), Gaps = 18/411 (4%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L EV +L V +A VP
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVP 155
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 156 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 215
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLV 275
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 276 FSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRM 335
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G
Sbjct: 336 VMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGL 393
Query: 309 VESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +E++ + L Q P P + DK + + +GL K+ E
Sbjct: 394 VESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTMWVIGLVFKK-TENSEN 451
Query: 364 EQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRN----LPNFVF 406
D+ ++ F V + + M+I+ HV R+ LPN V
Sbjct: 452 LSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPNHVL 502
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/402 (46%), Positives = 249/402 (61%), Gaps = 14/402 (3%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L EV +L V +A VP
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVP 155
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 156 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 215
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLV 275
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 276 FSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRM 335
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G
Sbjct: 336 VMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGL 393
Query: 309 VESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +E++ + L Q P P + DK + + +GL K+ E
Sbjct: 394 VESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTMWVIGLVFKK-TENSEN 451
Query: 364 EQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRNL 401
D+ ++ F V + + M+I+ HV R+ L
Sbjct: 452 LSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 345 bits (884), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 186/415 (44%), Positives = 256/415 (61%), Gaps = 15/415 (3%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L + EV +L V +A VP
Sbjct: 79 IFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYDKLKQQEEVKDLRSVEEAFVP 137
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 138 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 197
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 198 NIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLV 257
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 258 FSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRA 317
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + + +A +W LF+ FF+ YK+Y+ + SA W G
Sbjct: 318 VMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGL 375
Query: 309 VESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYF-----MGLQRKQGVPVGEG 363
VES++R L +E++ + L H +P F S+ + F +GL K+ + E
Sbjct: 376 VESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEFRTMWVIGLVFKK-MENSEN 433
Query: 364 EQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRNLPNFVFPGGVRPSR 414
D+ ++ F V + + M+I+ HV R+ L + + P V P +
Sbjct: 434 LSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQL-HQLQPSHVSPKK 487
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 345 bits (884), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 210/520 (40%), Positives = 296/520 (56%), Gaps = 58/520 (11%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV P H R DFF + L EV +L V +A VP
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKLKLQEEVKDLRAVEEAFVP 155
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 156 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 215
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I NFR TLR ++ WAK +YSN+ GFLGG++WA+LVAR CQLYPNAV S LV +FF V
Sbjct: 216 NIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLV 275
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 276 FSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRM 335
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + ++A +W LFE +FF+ YK+Y+ + SA W G
Sbjct: 336 VMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGL 393
Query: 309 VESRLRQLTLKIERHTYNMLQCHPHPGDF-SDKSKP----LYCSYFMGLQRKQ---GVPV 360
VES++R L +E++ + L H +P F + K P + +GL K+ +
Sbjct: 394 VESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDMEEFRTMWVIGLGLKKPDNSEIL 452
Query: 361 GEGEQFDIR-LTVKEFKQAVS--MYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSK 417
+DI+ T ++QAV+ M+ + GM+I+ H+ R+ L
Sbjct: 453 SIDLTYDIQSFTDTVYRQAVNSKMFEM---GMKITAMHLRRKEL---------------- 493
Query: 418 GTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATM--PSSSGEFREG- 474
+ L V K + +GR+ TD N + +A C +M PSS+ + G
Sbjct: 494 -----HQLLPHHVLQDKKAHSTEGRRL--TDLNDSSFDLSAGCENSMSVPSSTSTMKTGP 546
Query: 475 ---------SPIMSTISSSSINLQ-----FEHMDANELAG 500
SP ++ +++S N+Q + ++ NE +G
Sbjct: 547 LISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSG 586
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 207/519 (39%), Positives = 300/519 (57%), Gaps = 56/519 (10%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R DFF + L EV +L V +A VP
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSFYDKLKLQEEVKDLRAVEEAFVP 155
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 156 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 215
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I +FR TLR ++ WAK +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 216 NIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLV 275
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 276 FSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRM 335
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
+M++EF++G I + N+A +W LFE +FF+ YK+Y+ + SA W G
Sbjct: 336 VMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGL 393
Query: 309 VESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEG 363
VES++R L +E++ + L Q P P + +DK + + +GL K+ E
Sbjct: 394 VESKIRILVGSLEKNEFITLAHVNPQSFPAPKETADKEE-FRTMWVIGLVLKKP-ENSEI 451
Query: 364 EQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPS 416
D+ ++ F +QA++ M+ + M+I+ H+ R+ L + + P V
Sbjct: 452 LSIDLTYDIQSFTDTVYRQAINSKMFEM---DMKIAAMHLRRKEL-HQLLPNHV------ 501
Query: 417 KGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREG-- 474
L++K + T + R TD ++ + +++ T PS +G + G
Sbjct: 502 ---------LQKKETHLT----ESVRLTAVTDSSLLLSI-DSENSMTAPSPTGTMKTGPL 547
Query: 475 --------SPIMSTISSSSINLQF-----EHMDANELAG 500
SP ++ +++S N+QF +H++ E +G
Sbjct: 548 TGNPQGRNSPALAVMAASVTNIQFPDVSLQHVNPIESSG 586
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 230/332 (69%), Gaps = 5/332 (1%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + V+GPG+DIDTL V P+H TR+ DFF ++ + PE+ E+ VPDA+VP
Sbjct: 83 VFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFADIIRKRPELEEIACVPDAYVP 141
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
++K +F G+SIDL+ ARL++ +P DL + ++L+N DE+ +RSLNG RVTD+IL+LVP
Sbjct: 142 IIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSLNGTRVTDEILQLVP 201
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
K F+ LRC++ WA++R VY N+ GF GG+ WA+LVARICQLYPNAV S +V +FF +
Sbjct: 202 KPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSSAIVEKFFNI 261
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
YT+W WP PVLL +IE+G L ++VW+PR P D+ H MP+ITPAYP M +++N+++ST +
Sbjct: 262 YTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYPSMCATHNITSSTQK 321
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYL-RIDISAENADDLRNWKG 307
+++ E RG I + + + W LFE +FF YK YL + S ++A++ + W G
Sbjct: 322 VILAELSRGSSIMQEIHAGKK--TWSDLFEKHSFFYKYKFYLCVVAASIDSAEEHKKWSG 379
Query: 308 WVESRLRQLTLKIERHTYNMLQCHPHPGDFSD 339
++ES+LRQL LK+E + HP+ DFS+
Sbjct: 380 FIESKLRQLVLKLEV-AEGVEIAHPYVKDFSN 410
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 220/313 (70%), Gaps = 3/313 (0%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + V+GPG+DIDTL V P+H +R+ +FF +L ML E EVT+L VPDA+VP
Sbjct: 83 IFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPMLREREEVTDLAAVPDAYVP 141
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
++KFKF G+SIDL++ARLS+ +P DL++S +++L+ +E+ V SLNG RVTDQIL+LVP
Sbjct: 142 IIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRVTDQILQLVP 201
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
F+ LR ++FWA+RR +Y+NV GF GG+ WA++VARICQLYPNAV S++V++FFR+
Sbjct: 202 NRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQLYPNAVSSVIVAKFFRI 261
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
QW WP P+LL IE+G L +++W+P+ P DK H MPIITPAYP M +++N++ ST
Sbjct: 262 LHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCATHNITLSTQT 321
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGW 308
I++ E R EI + + + W LF+ FF YK+YL I +A+ A+ W G
Sbjct: 322 IILREMVRAGEIADQIMVKA--LPWSALFQKHDFFHRYKHYLTITAAAKTAEAQLKWAGL 379
Query: 309 VESRLRQLTLKIE 321
VES+LR L ++E
Sbjct: 380 VESKLRHLVTRLE 392
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 212/314 (67%), Gaps = 4/314 (1%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VHGPG+DIDTL V P+H TRE DFF +L E E+ E+ PVPDA VP
Sbjct: 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVP 142
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
++K KFSG+SIDL+ ARL +P L +S ++L+N DE+ +R+LNG RVTD+IL LVP
Sbjct: 143 IIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVP 202
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
K FR LR ++ WA+RR VY+N+ GF GG+ WA+LVARICQLYPNA +++++RFF +
Sbjct: 203 KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFII 262
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
++W WP PV+L IE+G L ++VW+P+ +D+ H MP+ITPAYP M +++N++ ST +
Sbjct: 263 LSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLR-NWKG 307
+++ EF RG +I + N+ W LFE FF YK YL I +D+ W G
Sbjct: 323 VILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSG 380
Query: 308 WVESRLRQLTLKIE 321
VES++R L +K+E
Sbjct: 381 LVESKVRLLVMKLE 394
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/340 (45%), Positives = 225/340 (66%), Gaps = 10/340 (2%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + V+GPG+DIDTL V P+H +R DFF +++L E+ E+ PVPDA VP
Sbjct: 83 IFTFGSYRLGVYGPGSDIDTLVVVPKHVSRN-DFFEVFYELLKGRSELEEIAPVPDAFVP 141
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
++K +F+G+SIDL++ARL + +P DL + ++L+N DE+ +R+LNG RVTD+IL+LVP
Sbjct: 142 IIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDEILQLVP 201
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
K F+ LRC++ WA++R VY N+ GF GG+ WA+LVARICQLYPNAV +++V +FF +
Sbjct: 202 KPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSAVIVEKFFHI 261
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
Y+QW WP PVLL IE+G L ++VW+PR D+ H MP+ITPAYP M +++N+++ST +
Sbjct: 262 YSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCATHNITSSTQK 321
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAEN--ADDLRNWK 306
+++ EFQRG E+ + N W L E FF YK YL I + + A+ L+ +
Sbjct: 322 VILSEFQRGIELMNDI--NVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYAEHLK-YS 378
Query: 307 GWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYC 346
G VES+LR L K+E + HP+ F + YC
Sbjct: 379 GMVESKLRLLVQKLEL-VEGIELAHPYVKSFENG---YYC 414
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/279 (54%), Positives = 197/279 (70%), Gaps = 3/279 (1%)
Query: 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVP 68
+ G + VH GADID LCV PRH R D F ++ L + EV +L V +A VP
Sbjct: 94 IFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLFSSFYEKLKQQEEVKDLRSVEEAFVP 152
Query: 69 VMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 128
V+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSLNGCRVTD+IL LVP
Sbjct: 153 VIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVP 212
Query: 129 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRV 188
I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYPNA+ S LV +FF V
Sbjct: 213 NIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLV 272
Query: 189 YTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 248
+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP NS+YNVS ST
Sbjct: 273 FSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRA 332
Query: 249 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 287
+M++EF++G I + + +A +W LF+ FF+ YK
Sbjct: 333 VMVEEFKQGLAITDEILLLKA--EWSKLFDAPNFFQKYK 369
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 186 bits (471), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 152/261 (58%), Gaps = 16/261 (6%)
Query: 164 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 223
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 224 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 283
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFF 118
Query: 284 EAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFS 338
+ YK+Y+ + SA W G VES++R L +E++ + L Q P P + S
Sbjct: 119 QKYKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSENS 178
Query: 339 DKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVSMYTLRKPGMQISV 393
+K + + +GL K+ + E D+ ++ F +QA++ ++I+
Sbjct: 179 EKEE-FRTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVYRQAINSKMFET-EIKIAA 235
Query: 394 AHVTRRNLPNFVFPGGVRPSR 414
HV R+ L + + P V P +
Sbjct: 236 MHVKRKQL-HQLLPSHVLPKK 255
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 177/351 (50%), Gaps = 18/351 (5%)
Query: 13 GYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKF 72
G + +V+G +DID V TR+ DF+ L+ L P+V EL +P P +
Sbjct: 64 GSYRLNVYGNNSDIDACIVSNSTITRD-DFYDGLYAELLNNPDVKELKQIPSKRSPHLSM 122
Query: 73 KFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPK--I 130
+ + DL ++R + +P++LDI ++IL+N DE R++NG R TD I VP
Sbjct: 123 IYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHSE 182
Query: 131 QNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYT 190
+ FR +R ++ W K+RG+Y V FL GI+ +LVA++ L+ +FF+VY+
Sbjct: 183 EAFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVYS 242
Query: 191 QWRW-PNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRI 249
W W PV+L ++ N K K ++ I+TPA P N++++++ +L +
Sbjct: 243 SWDWLRTPVMLGTNDDF-----------NDKKKEGVIQILTPASPSENAAFSITKFSLEM 291
Query: 250 MMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWV 309
+ E +RG EI +E DW LF+P F Y ++ +++ + + L G
Sbjct: 292 IKRELKRGQEIVHEF-SSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGKF 350
Query: 310 ESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPV 360
ES L L +K +++ + P F D+ Y Y++G+ K+ PV
Sbjct: 351 ESGLVNL-MKGLSEIEEIIEANVIPNGFLDEENEKYF-YYVGMNVKRDCPV 399
>sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=aroB PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 82 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQIL 124
L A + LW I +DLD S DSIL+NA++ S C V QI+
Sbjct: 190 LIADVELWEILKDLDGSTDSILENAEKIIYHS---CNVKRQIV 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,876,722
Number of Sequences: 539616
Number of extensions: 11023679
Number of successful extensions: 25796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 25361
Number of HSP's gapped (non-prelim): 152
length of query: 655
length of database: 191,569,459
effective HSP length: 124
effective length of query: 531
effective length of database: 124,657,075
effective search space: 66192906825
effective search space used: 66192906825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)