Query 006232
Match_columns 655
No_of_seqs 216 out of 642
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 4E-106 1E-110 889.1 37.7 411 3-417 91-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 3E-101 1E-105 852.5 36.7 401 5-412 80-528 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 1.2E-45 4E-50 386.3 20.9 243 3-279 51-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 2E-43 6.7E-48 373.0 15.4 228 4-261 64-348 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.8E-42 6E-47 372.9 21.8 247 4-286 80-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 8.8E-43 3E-47 364.7 18.7 228 4-264 57-299 (323)
7 2b4v_A RNA editing complex pro 100.0 1.8E-35 6.1E-40 323.7 16.6 259 4-265 56-441 (468)
8 3pq1_A Poly(A) RNA polymerase; 100.0 8.8E-31 3E-35 286.0 23.6 200 3-263 169-437 (464)
9 3hj4_A Minor editosome-associa 100.0 6.6E-31 2.2E-35 280.9 19.0 242 4-279 43-379 (384)
10 1r89_A TRNA nucleotidyltransfe 98.9 2.2E-08 7.5E-13 109.1 18.7 299 7-377 40-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 98.8 4.2E-07 1.4E-11 95.6 21.3 227 8-253 56-322 (349)
12 1no5_A Hypothetical protein HI 96.6 0.0034 1.2E-07 55.8 6.8 47 4-52 25-71 (114)
13 1ylq_A Putative nucleotidyltra 96.3 0.0051 1.8E-07 53.2 5.7 31 4-34 15-46 (96)
14 1wot_A Putative minimal nucleo 95.5 0.0042 1.5E-07 53.9 1.8 32 4-35 23-54 (98)
15 2rff_A Putative nucleotidyltra 95.3 0.021 7.3E-07 50.9 5.5 41 4-46 30-71 (111)
16 4at7_A Interleukin enhancer-bi 93.7 2.4 8.3E-05 45.3 17.6 209 8-261 75-295 (364)
17 1jaj_A DNA polymerase beta-lik 92.8 0.15 5.3E-06 49.2 6.3 110 4-157 29-143 (174)
18 4at7_B NF90, interleukin enhan 92.7 3.6 0.00012 44.3 17.1 211 9-261 94-327 (383)
19 2fmp_A DNA polymerase beta; nu 92.5 0.34 1.1E-05 51.0 8.9 117 5-156 171-298 (335)
20 2bcq_A DNA polymerase lambda; 91.7 1 3.5E-05 47.4 11.5 118 4-157 167-293 (335)
21 4ebj_A Aminoglycoside nucleoti 89.0 0.18 6.1E-06 51.8 2.7 31 4-34 37-68 (272)
22 1kny_A Kntase, kanamycin nucle 88.8 0.21 7.1E-06 50.2 3.0 29 7-35 32-60 (253)
23 2ihm_A POL MU, DNA polymerase 88.0 1.2 4.3E-05 47.2 8.5 53 4-58 174-226 (360)
24 3b0x_A DNA polymerase beta fam 83.0 3.7 0.00013 45.9 9.5 108 5-157 179-286 (575)
25 1jms_A Terminal deoxynucleotid 81.4 3.9 0.00013 43.8 8.6 53 5-58 195-248 (381)
26 3jz0_A Lincosamide nucleotidyl 74.8 3.8 0.00013 42.3 6.0 72 9-87 44-116 (287)
27 1v4a_A Glutamate-ammonia-ligas 57.4 8.5 0.00029 41.8 4.6 48 5-52 153-208 (440)
28 2w9m_A Polymerase X; SAXS, DNA 52.2 7.4 0.00025 43.5 3.2 94 9-157 182-276 (578)
29 3k7d_A Glutamate-ammonia-ligas 48.0 17 0.00058 40.2 5.1 48 5-52 233-289 (498)
30 2pbe_A AAD6, aminoglycoside 6- 47.7 14 0.00049 37.9 4.2 74 9-87 26-110 (294)
31 2fcl_A Hypothetical protein TM 25.0 1.4E+02 0.0047 28.2 6.6 69 7-84 34-107 (169)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.8e-106 Score=889.10 Aligned_cols=411 Identities=44% Similarity=0.784 Sum_probs=378.8
Q ss_pred CCCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEEcCeeeeEE
Q 006232 3 RYLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLL 82 (655)
Q Consensus 3 r~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~IDL~ 82 (655)
+.++++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+
T Consensus 91 ~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~ 169 (514)
T 1q79_A 91 ENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDIL 169 (514)
T ss_dssp TTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEE
T ss_pred ccCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEE
Confidence 4678999999999999999999999999999999984 999999999999999999999999999999999999999999
Q ss_pred eeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCcccchHHH
Q 006232 83 YARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINW 162 (655)
Q Consensus 83 fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfLGGisw 162 (655)
||+++...+|+++++.++++|+++|+++++||||+|++++|+++||+.++||.++|+||+|||+||||+|++||||||+|
T Consensus 170 f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~ 249 (514)
T 1q79_A 170 FARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSW 249 (514)
T ss_dssp EEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHH
T ss_pred EecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCcccccCCCCCCCCCCCceeeeCCCCCCCCccccc
Q 006232 163 ALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNV 242 (655)
Q Consensus 163 AILVArvcQlyPnas~s~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMpIiTPa~P~~Nsa~NV 242 (655)
+||||++||+||++++++||.+||++|++|+|++||+|+.+++|.+++++|+|+.++.|++|+|||+||++|++|+|+||
T Consensus 250 ~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nV 329 (514)
T 1q79_A 250 AMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNV 329 (514)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccCCCCCccccCccchhhhcccEEEEEEEecChhhhcchhhhhHHHHHHHHHHHhh
Q 006232 243 STSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIER 322 (655)
Q Consensus 243 s~STl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~ 322 (655)
+.+|+++|++||+||+++|+++..++. +|++||+|++||.+|+|||+|++++.+++++.+|.||||||||.|+.+||+
T Consensus 330 s~st~~~I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~ 407 (514)
T 1q79_A 330 SVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEK 407 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhcc
Confidence 999999999999999999999998877 999999999999999999999999999999999999999999999999998
Q ss_pred ccccceeeccCCCCCCCCC-----CCcEEEEEEeeeecc---CCCCCCCceechHHHHHHHHHHHHhhccCCCCcEEEEE
Q 006232 323 HTYNMLQCHPHPGDFSDKS-----KPLYCSYFMGLQRKQ---GVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVA 394 (655)
Q Consensus 323 ~~~~~l~ahp~P~~f~~~~-----~~~~~~yfIGL~~~~---~~~~~~~~~~DL~~~v~eF~~~v~~~~~~~~gm~i~v~ 394 (655)
.. .+..|||||+.|.+.. ..|+++|||||+++. ......+.++||+.++++|++.|++|..|++||+|+|+
T Consensus 408 ~~-~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~ 486 (514)
T 1q79_A 408 NE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAM 486 (514)
T ss_dssp ST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred CC-CceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEE
Confidence 64 4456999999998653 358899999999864 22223456799999999999999999999999999999
Q ss_pred EecCCCCCCCcCCCCCCCCCCCC
Q 006232 395 HVTRRNLPNFVFPGGVRPSRPSK 417 (655)
Q Consensus 395 ~Vkr~~LP~~v~~~~~~~~~~~k 417 (655)
|||+++||++||++|.|++++..
T Consensus 487 ~vk~~~Lp~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 487 HVKRKQLHQLLPSHVLQKKKKHS 509 (514)
T ss_dssp EEEHHHHGGGCC-----------
T ss_pred EechHHCchhhcchhccCCCCCC
Confidence 99999999999999998876543
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=3.3e-101 Score=852.47 Aligned_cols=401 Identities=41% Similarity=0.765 Sum_probs=377.1
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEEcCeeeeEEee
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYA 84 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~IDL~fa 84 (655)
.+++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+||
T Consensus 80 ~~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~ 158 (530)
T 2hhp_A 80 AGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICA 158 (530)
T ss_dssp TBCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEE
T ss_pred cCceEEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEe
Confidence 47999999999999999999999999999999984 99999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCcccchHHHHH
Q 006232 85 RLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWAL 164 (655)
Q Consensus 85 ~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfLGGiswAI 164 (655)
+++...+|+++++.++++|+++|++|++||||+|++++|+++||+.++||.++|+||+|||+||||++++||||||+|+|
T Consensus 159 ~~~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~ 238 (530)
T 2hhp_A 159 RLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAM 238 (530)
T ss_dssp ECSSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHH
T ss_pred ccccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCcccccCCCCCCCCCCCceeeeCCCCCCCCcccccCh
Q 006232 165 LVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVST 244 (655)
Q Consensus 165 LVArvcQlyPnas~s~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMpIiTPa~P~~Nsa~NVs~ 244 (655)
|||++||+||++++++||.+||++|++|+|++||+|+.+++|.+++++|+|+.|..|+.|+|||+||++|++|+|+|||.
T Consensus 239 LVa~~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~ 318 (530)
T 2hhp_A 239 LVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITE 318 (530)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCH
Confidence 99999999999999999999999999999999999999988988999999998888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCccccCccchhhhcccEEEEEEEec-ChhhhcchhhhhHHHHHHHHHHHhhc
Q 006232 245 STLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAE-NADDLRNWKGWVESRLRQLTLKIERH 323 (655)
Q Consensus 245 STl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~ 323 (655)
+|+++|++||+||+++|+++..++. +|.+||+|++||.+|+|||+|++++. +++++.+|.||||||+|.|+.+||+.
T Consensus 319 st~~~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~ 396 (530)
T 2hhp_A 319 STKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL 396 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999988777 99999999999999999999999998 99999999999999999999999994
Q ss_pred cccceeeccCCCCCCCC--------------------------------------------CCCcEEEEEEeeeeccCCC
Q 006232 324 TYNMLQCHPHPGDFSDK--------------------------------------------SKPLYCSYFMGLQRKQGVP 359 (655)
Q Consensus 324 ~~~~l~ahp~P~~f~~~--------------------------------------------~~~~~~~yfIGL~~~~~~~ 359 (655)
+++..|||||+.|.+. ...++++|||||+++..
T Consensus 397 -~~i~~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~-- 473 (530)
T 2hhp_A 397 -AGIKIAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE-- 473 (530)
T ss_dssp -TTEEEEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC----
T ss_pred -cCceeeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC--
Confidence 5677899999998421 12367899999998743
Q ss_pred CCCCceechHHHHHHHHHHHHhhcc-CCCC-cE-EEEEEecCCCCCCCcCCCCCCC
Q 006232 360 VGEGEQFDIRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRNLPNFVFPGGVRP 412 (655)
Q Consensus 360 ~~~~~~~DL~~~v~eF~~~v~~~~~-~~~g-m~-i~v~~Vkr~~LP~~v~~~~~~~ 412 (655)
..++++||+.++++|++.|++|.. |++| |+ |.|+|||+++||++||++|+++
T Consensus 474 -~~~~~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~ 528 (530)
T 2hhp_A 474 -NKKEKVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKR 528 (530)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCC
T ss_pred -CCCceEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcC
Confidence 235689999999999999999998 8887 78 9999999999999999977643
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.2e-45 Score=386.31 Aligned_cols=243 Identities=18% Similarity=0.218 Sum_probs=197.6
Q ss_pred CCCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEEc-------
Q 006232 3 RYLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFS------- 75 (655)
Q Consensus 3 r~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~------- 75 (655)
.||+++|++||||++|+++|+||||++|+.|.....+ .++..+...+.+ ...+++.|.+|+||||||++.
T Consensus 51 ~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~ 127 (349)
T 4fh3_A 51 ISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGA 127 (349)
T ss_dssp TCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCT
T ss_pred HCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccc
Confidence 4899999999999999999999999999999888774 677666666554 346788899999999999973
Q ss_pred CeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCc
Q 006232 76 GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAG 155 (655)
Q Consensus 76 GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~G 155 (655)
|+.||++|++ .+|+|.++.|..+++..++||.++++||+|||+||||++..|
T Consensus 128 ~~~~Dis~~~----------------------------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G 179 (349)
T 4fh3_A 128 SFQCDIGFNN----------------------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFG 179 (349)
T ss_dssp TCCEEEEESC----------------------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGT
T ss_pred cceeecCcCc----------------------------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 7899999875 368999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhh------CCC--------------------------------CCHHHHHHHHHHhhc-cCCCCC
Q 006232 156 FLGGINWALLVARICQL------YPN--------------------------------AVPSMLVSRFFRVYT-QWRWPN 196 (655)
Q Consensus 156 fLGGiswAILVArvcQl------yPn--------------------------------as~s~LL~~FF~~Ys-~WdWp~ 196 (655)
+||||+|+|||+++||. +|+ .++++||.+||+||+ +|||++
T Consensus 180 ~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~ 259 (349)
T 4fh3_A 180 TLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPRE 259 (349)
T ss_dssp SCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTT
T ss_pred CCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCC
Confidence 99999999999999984 333 368899999999999 799999
Q ss_pred ceeecccccCCC---------cccccCCCCCCCCCCCceeeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhc
Q 006232 197 PVLLCAIEEGSL---------GLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKN 267 (655)
Q Consensus 197 PV~L~~i~~g~l---------g~~vWdP~~~~~dr~hlMpIiTPa~P~~Nsa~NVs~STl~vI~~EF~RA~~Il~~i~~~ 267 (655)
.|+......+.+ ....|++..+..+..+.|+|+||++|.+|+|++|+..+++.|++||+||+++|++..
T Consensus 260 ~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-- 337 (349)
T 4fh3_A 260 KVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-- 337 (349)
T ss_dssp BCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS--
T ss_pred ceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc--
Confidence 886433222221 112333333334456789999999999999999999999999999999999997522
Q ss_pred cCCCCCccccCc
Q 006232 268 EADVDWDTLFEP 279 (655)
Q Consensus 268 ~~~~~W~~Lfep 279 (655)
.+.+|++|||.
T Consensus 338 -~~~~~~~lfe~ 348 (349)
T 4fh3_A 338 -YPIPYDSLFEE 348 (349)
T ss_dssp -SSCCGGGGGSC
T ss_pred -cCCCHHHHhhc
Confidence 23489999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=2e-43 Score=373.02 Aligned_cols=228 Identities=18% Similarity=0.252 Sum_probs=194.8
Q ss_pred CCCcEEEEeeccc-cCCcCCCCCeeEEEEcCCCCCc--------------hhhHHHHHHHHHhcCCCceeEeeecCCCcc
Q 006232 4 YLPLVLIGLGYDK-YSVHGPGADIDTLCVGPRHATR--------------EEDFFGELHQMLTEMPEVTELHPVPDAHVP 68 (655)
Q Consensus 4 ~p~~~L~~FGSyr-LGV~~p~SDID~lcv~P~~vtr--------------~edFF~~l~~~L~~~~~V~~l~~V~~ArVP 68 (655)
||+++|++||||+ +|+++|+||||++|+.|..++. ..+++..+...|++...+.+++.|.+|+||
T Consensus 64 ~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVP 143 (353)
T 2ikf_A 64 DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVP 143 (353)
T ss_dssp CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSC
T ss_pred CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEeccccee
Confidence 7999999999998 9999999999999998743210 136888999999988888999999999999
Q ss_pred eEEEEE-cCeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHc
Q 006232 69 VMKFKF-SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRR 147 (655)
Q Consensus 69 IIKf~~-~GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrR 147 (655)
||||++ .||+|||+|++ .+|++.++.|..++...++||.++++||+|||+|
T Consensus 144 IiK~~~~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r 195 (353)
T 2ikf_A 144 VVRVKGGGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQT 195 (353)
T ss_dssp EEEEECSSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 999998 69999999975 3588999999999999999999999999999999
Q ss_pred CCCCCCC-cccchHHHHHHHHHHHhh------CC------------------------CCCHHHHHHHHHHhhc-cCCCC
Q 006232 148 GVYSNVA-GFLGGINWALLVARICQL------YP------------------------NAVPSMLVSRFFRVYT-QWRWP 195 (655)
Q Consensus 148 GIYsn~~-GfLGGiswAILVArvcQl------yP------------------------nas~s~LL~~FF~~Ys-~WdWp 195 (655)
|||++.. |+||||+|+|||+++||. +| +.++++||.+||+||+ +|||.
T Consensus 196 ~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~ 275 (353)
T 2ikf_A 196 GLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSD 275 (353)
T ss_dssp TCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcC
Confidence 9999999 999999999999999985 23 2356899999999999 89999
Q ss_pred CceeecccccCC-Cc--ccccCCC------CCCCCCCCceeeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 006232 196 NPVLLCAIEEGS-LG--LQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEIC 261 (655)
Q Consensus 196 ~PV~L~~i~~g~-lg--~~vWdP~------~~~~dr~hlMpIiTPa~P~~Nsa~NVs~STl~vI~~EF~RA~~Il 261 (655)
++|+. +..|. +. ...|+++ .++.++.+.|+|+||++|.+|+|++|+.++++.|++||+||++++
T Consensus 276 ~~vIs--i~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 276 KQVIS--LNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp TEEEC--SSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ceEEE--cCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 98753 23332 21 2357642 222345678999999999999999999999999999999999976
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.8e-42 Score=372.89 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=204.5
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEE---c----C
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF---S----G 76 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~---~----G 76 (655)
||+++|++|||+++|+++|+||||++++.|.....+ +++..+...|++. ..+++.|..|+||||||++ . |
T Consensus 80 ~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~g 156 (405)
T 4e8f_A 80 SPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGAS 156 (405)
T ss_dssp CTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTT
T ss_pred CCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCc
Confidence 789999999999999999999999999999866553 7899999999986 6789999999999999996 4 9
Q ss_pred eeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCcc
Q 006232 77 VSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGF 156 (655)
Q Consensus 77 I~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~Gf 156 (655)
|+|||+|++. +|++.+..|..++...++||.++++||+|||+||||++..|+
T Consensus 157 i~~DIs~~n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~Gg 208 (405)
T 4e8f_A 157 FQCDIGFNNR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGT 208 (405)
T ss_dssp CCEEEEESCH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTS
T ss_pred eEEEEeeccc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCC
Confidence 9999999863 467777888888777899999999999999999999999999
Q ss_pred cchHHHHHHHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHhhc-cCCCCCc
Q 006232 157 LGGINWALLVARIC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-QWRWPNP 197 (655)
Q Consensus 157 LGGiswAILVArvc-Ql-----yPn--------------------------------as~s~LL~~FF~~Ys-~WdWp~P 197 (655)
||||+|+|||+++| |. +|+ .++++||..||+||+ .|||.+.
T Consensus 209 lsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~ 288 (405)
T 4e8f_A 209 LSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREK 288 (405)
T ss_dssp CCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTB
T ss_pred cChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCc
Confidence 99999999999999 73 232 468999999999999 8999998
Q ss_pred eeecccc-cC-CCc--ccccCCCCC-------CCCCCCceeeeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHh
Q 006232 198 VLLCAIE-EG-SLG--LQVWDPRRN-------PKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEK 266 (655)
Q Consensus 198 V~L~~i~-~g-~lg--~~vWdP~~~-------~~dr~hlMpIiTPa~P~~Nsa~NVs~STl~vI~~EF~RA~~Il~~i~~ 266 (655)
|+. +. .| .+. .+.|..... ..++.+.|+|+||++|.+|+|++|+..+++.|++||+||+++|+....
T Consensus 289 vIs--ir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~ 366 (405)
T 4e8f_A 289 VVT--FRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY 366 (405)
T ss_dssp EEC--SSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred EEE--EecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 753 33 33 232 246876421 113457899999999999999999999999999999999999975321
Q ss_pred ccCCCCCccccCccchhhhc
Q 006232 267 NEADVDWDTLFEPFTFFEAY 286 (655)
Q Consensus 267 ~~~~~~W~~Lfep~~FF~~Y 286 (655)
+.+|++||++.++..+.
T Consensus 367 ---~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 367 ---PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp ---SCCGGGGGSCCCCC---
T ss_pred ---CCCHHHHhCcCCCcccc
Confidence 33899999999998854
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-43 Score=364.74 Aligned_cols=228 Identities=21% Similarity=0.297 Sum_probs=198.7
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEE--cCeeeeE
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDL 81 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~--~GI~IDL 81 (655)
||+++|++|||+++|+++|+||||++|+.|.......+++..+.+.|++.+.+++++.|.+|+||||||++ .||+|||
T Consensus 57 ~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDI 136 (323)
T 3nyb_A 57 WPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAV 136 (323)
T ss_dssp CTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEE
Confidence 79999999999999999999999999999986532236889999999998888999999999999999996 7999999
Q ss_pred EeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCcccchHH
Q 006232 82 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGIN 161 (655)
Q Consensus 82 ~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfLGGis 161 (655)
+|++ .+|+|.++.|.++++..++||.++++||+|||+||||++..|+||||+
T Consensus 137 s~~~----------------------------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~ 188 (323)
T 3nyb_A 137 SFER----------------------------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFS 188 (323)
T ss_dssp ESSC----------------------------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHH
T ss_pred EecC----------------------------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHH
Confidence 9986 268999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC---------CCHHHHHHHHHHhhc-cCCCCCceeecccccCC---CcccccCCCCCCCCCCCceee
Q 006232 162 WALLVARICQLYPN---------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPI 228 (655)
Q Consensus 162 wAILVArvcQlyPn---------as~s~LL~~FF~~Ys-~WdWp~PV~L~~i~~g~---lg~~vWdP~~~~~dr~hlMpI 228 (655)
|+|||+++||++|+ .++++||.+||+||+ +|||.+.++. +..|. .....|.. ..+.++.+.|+|
T Consensus 189 l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~-~~~~~~~~~l~I 265 (323)
T 3nyb_A 189 IICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSA-IQPIKNPFSLAI 265 (323)
T ss_dssp HHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGG-GCSCSCSSSCCB
T ss_pred HHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhccc-ccccCCCceEEE
Confidence 99999999999985 357899999999999 9999997642 34443 23346754 222244678999
Q ss_pred eCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHH
Q 006232 229 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAM 264 (655)
Q Consensus 229 iTPa~P~~Nsa~NVs~STl~vI~~EF~RA~~Il~~i 264 (655)
++|+.|..|+++++ ..++.|++||++|+++|++-
T Consensus 266 eDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 266 QDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp EETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCcccccch--HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999885 46889999999999999864
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.8e-35 Score=323.70 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=184.2
Q ss_pred CCCcEEEEeecc-ccCCcCCCCCeeEEEEcCCCCCch-hhHH--HHHHHHHhcC-CC--ceeEeeecCCCcceEEEEEcC
Q 006232 4 YLPLVLIGLGYD-KYSVHGPGADIDTLCVGPRHATRE-EDFF--GELHQMLTEM-PE--VTELHPVPDAHVPVMKFKFSG 76 (655)
Q Consensus 4 ~p~~~L~~FGSy-rLGV~~p~SDID~lcv~P~~vtr~-edFF--~~l~~~L~~~-~~--V~~l~~V~~ArVPIIKf~~~G 76 (655)
||+++|++|||| .+|+++|+||||++|+.+...... .... ..+...|++. ++ +.++++|.+|+||||||++.+
T Consensus 56 ~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~ 135 (468)
T 2b4v_A 56 TPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFAN 135 (468)
T ss_dssp CTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCC
T ss_pred CCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEecc
Confidence 899999999999 799999999999999987422211 1111 2478888886 55 689999999999999998322
Q ss_pred ------------------------------------------------------------eeeeEEeeecc-----cccc
Q 006232 77 ------------------------------------------------------------VSIDLLYARLS-----LWVI 91 (655)
Q Consensus 77 ------------------------------------------------------------I~IDL~fa~l~-----~~~i 91 (655)
..+|++|.+.. ....
T Consensus 136 ~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~ 215 (468)
T 2b4v_A 136 DEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFF 215 (468)
T ss_dssp HHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhccc
Confidence 12456665421 0111
Q ss_pred CCC--CC--CChhhhhccch------------hhhhhhccchhhHHHHHHhcCCchh-HHHHHHHHHHHHHHcCCCCCCC
Q 006232 92 PED--LD--ISQDSILQNAD------------EQTVRSLNGCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVA 154 (655)
Q Consensus 92 pe~--ld--l~~d~lL~~lD------------e~svrSLNG~Rvtd~IlrlVPn~~~-FR~lLR~IK~WAKrRGIYsn~~ 154 (655)
|+. +. +.++..+..+| +-|.. .+|++.++.|..++-..++ ||.++++||+|||+|||+++..
T Consensus 216 ~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~ 294 (468)
T 2b4v_A 216 PDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSG 294 (468)
T ss_dssp CCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----C
T ss_pred ccccccccccccccccccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccC
Confidence 111 00 00000000111 12343 6899999998888887888 9999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhhC-----------------CC------------CCHHHHHHHHHHhhc-cCCCCCceeecccc
Q 006232 155 GFLGGINWALLVARICQLY-----------------PN------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE 204 (655)
Q Consensus 155 GfLGGiswAILVArvcQly-----------------Pn------------as~s~LL~~FF~~Ys-~WdWp~PV~L~~i~ 204 (655)
|+||||+|++||++++|.. |+ .++++||..||+||+ +|||.+.|+. +.
T Consensus 295 G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vIS--ir 372 (468)
T 2b4v_A 295 AMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVS--LN 372 (468)
T ss_dssp CSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBC--SS
T ss_pred CCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEE--ec
Confidence 9999999999999999864 11 147899999999999 9999998652 33
Q ss_pred cCCC-c--ccccCCCCCC-CCCCCceeeeCCCCC----CCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 006232 205 EGSL-G--LQVWDPRRNP-KDKYHLMPIITPAYP----CMNSSYNVSTSTLRIMMDEFQRGHEICEAME 265 (655)
Q Consensus 205 ~g~l-g--~~vWdP~~~~-~dr~hlMpIiTPa~P----~~Nsa~NVs~STl~vI~~EF~RA~~Il~~i~ 265 (655)
.|.. . ...|....+. ....+.|+|++|+.| .+|+|++|+..+++.|++||++|+++|+...
T Consensus 373 ~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 373 RNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp SSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 4422 1 2357642211 011246999999999 9999999999999999999999999998643
No 8
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.97 E-value=8.8e-31 Score=286.00 Aligned_cols=200 Identities=16% Similarity=0.257 Sum_probs=162.2
Q ss_pred CCCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCC----------------------c--hhhHHHHHHHHHhcC-CCce
Q 006232 3 RYLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHAT----------------------R--EEDFFGELHQMLTEM-PEVT 57 (655)
Q Consensus 3 r~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vt----------------------r--~edFF~~l~~~L~~~-~~V~ 57 (655)
.||+++|++|||+.+|+++|+||||+++..+.... | ....+..+.+.|++. +++.
T Consensus 169 ~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~ 248 (464)
T 3pq1_A 169 YFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCV 248 (464)
T ss_dssp TSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEE
T ss_pred HCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCc
Confidence 48999999999999999999999999876543210 0 013566777788874 7899
Q ss_pred eEeeecCCCcceEEEEEc--CeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHH
Q 006232 58 ELHPVPDAHVPVMKFKFS--GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRT 135 (655)
Q Consensus 58 ~l~~V~~ArVPIIKf~~~--GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~ 135 (655)
+++.|..|+||||||+.. ||+|||+|++. +|++.+..|..+.-..++||.
T Consensus 249 ~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~----------------------------~gi~ns~ll~~y~~~dprlr~ 300 (464)
T 3pq1_A 249 GVQKILNARCPLVRFSHQASGFQCALTTNNR----------------------------IALTSSELLYIYGALDSRVRA 300 (464)
T ss_dssp EEEEECSSSSCEEEEEETTTCCEEEEECSCT----------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred eeEEecCCCCCEEEEEEcCCCeEEEEecCCC----------------------------cHHHHHHHHHHHHHhCccHHH
Confidence 999999999999999995 99999999873 477888888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCCCcc-cchHHHHHHHHHHHhhC-----CC----------------------------------
Q 006232 136 TLRCMRFWAKRRGVYSNVAGF-LGGINWALLVARICQLY-----PN---------------------------------- 175 (655)
Q Consensus 136 lLR~IK~WAKrRGIYsn~~Gf-LGGiswAILVArvcQly-----Pn---------------------------------- 175 (655)
++.+||+||++|||+++..|. ||+|+|++||++++|.. |+
T Consensus 301 Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~ 380 (464)
T 3pq1_A 301 LVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQ 380 (464)
T ss_dssp HHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------------CC
T ss_pred HHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCC
Confidence 999999999999999999996 99999999999999974 21
Q ss_pred --CCHHHHHHHHHHhhccCCCCCceeecccccCCCcccccCCCCCCCCCCCceeeeCCCCCCCCcccccChhhHHHHHHH
Q 006232 176 --AVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 253 (655)
Q Consensus 176 --as~s~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMpIiTPa~P~~Nsa~NVs~STl~vI~~E 253 (655)
.++++||..||+||++|||.+.|+ .| ..|++.||+.+.+++++.|
T Consensus 381 N~~slgeLL~gFF~yYa~FDf~~~vI---------------------------sI------~~Nvs~nV~~~~~~r~~~~ 427 (464)
T 3pq1_A 381 NTETLELLLKEFFEYFGNFAXXXXXX---------------------------XX------XXXXXXXVSQSQLQKFVDL 427 (464)
T ss_dssp CCCCHHHHHHHHHHHGGGCCCCCCCC---------------------------CC------C-------CHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCccccc---------------------------cc------ccccccccCHHHHHHHHHH
Confidence 246899999999999999998653 11 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 006232 254 FQRGHEICEA 263 (655)
Q Consensus 254 F~RA~~Il~~ 263 (655)
+++|..||+.
T Consensus 428 ~r~a~~il~~ 437 (464)
T 3pq1_A 428 ARESAWILQQ 437 (464)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999999983
No 9
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.97 E-value=6.6e-31 Score=280.87 Aligned_cols=242 Identities=15% Similarity=0.204 Sum_probs=179.5
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCC------ch-hhHHHH---HHHHHhcCCCceeEeeecCCCcceEEEE
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHAT------RE-EDFFGE---LHQMLTEMPEVTELHPVPDAHVPVMKFK 73 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vt------r~-edFF~~---l~~~L~~~~~V~~l~~V~~ArVPIIKf~ 73 (655)
||+++|++|||+.+|+++|+||||+++..+.... +. ...... +.+.+. ..+++.+. |..|+||||||.
T Consensus 43 ~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~ 120 (384)
T 3hj4_A 43 VNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFT 120 (384)
T ss_dssp STTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEE
T ss_pred CCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEE
Confidence 8999999999999999999999999888765321 10 001111 222222 13666665 459999999999
Q ss_pred E--cCeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCC-chhHHHHHHHHHHHHHHcCCC
Q 006232 74 F--SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPK-IQNFRTTLRCMRFWAKRRGVY 150 (655)
Q Consensus 74 ~--~GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn-~~~FR~lLR~IK~WAKrRGIY 150 (655)
. .||+|||+|++. +|++.+..|..+... ..+||.++++||+||++|||+
T Consensus 121 d~~tgi~~DIS~nn~----------------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn 172 (384)
T 3hj4_A 121 DGVTGIHCDVSIGNI----------------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVI 172 (384)
T ss_dssp CTTTCCEEEEEECCH----------------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSB
T ss_pred EcCCCeEEEEEeccc----------------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 7 599999999863 366777777777766 457999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHHhhC---CCC------------------------------------CHHHH----HHHHHH
Q 006232 151 SNVAGFLGGINWALLVARICQLY---PNA------------------------------------VPSML----VSRFFR 187 (655)
Q Consensus 151 sn~~GfLGGiswAILVArvcQly---Pna------------------------------------s~s~L----L~~FF~ 187 (655)
++..|+||||+|++||++++|.. |+. ++++| |..||+
T Consensus 173 ~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~ 252 (384)
T 3hj4_A 173 APERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAE 252 (384)
T ss_dssp CGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999963 221 25666 999999
Q ss_pred hhccCCCCCce-eecccccC-C------------Cc---ccccCCCC----------------------CCCCCCCceee
Q 006232 188 VYTQWRWPNPV-LLCAIEEG-S------------LG---LQVWDPRR----------------------NPKDKYHLMPI 228 (655)
Q Consensus 188 ~Ys~WdWp~PV-~L~~i~~g-~------------lg---~~vWdP~~----------------------~~~dr~hlMpI 228 (655)
||+.|||.+-| .|+.+..- . .| -+.|.... .......++.|
T Consensus 253 yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (384)
T 3hj4_A 253 YYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVV 332 (384)
T ss_dssp HHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCB
T ss_pred HheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceee
Confidence 99999999865 44332210 0 01 12343100 01223458999
Q ss_pred eCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCCccccCc
Q 006232 229 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 279 (655)
Q Consensus 229 iTPa~P~~Nsa~NVs~STl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep 279 (655)
++ +.-.+|+++.|+.+....|+.||+||++|+..-+.+. +.+++|..
T Consensus 333 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 379 (384)
T 3hj4_A 333 ED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESEL---KFDEVFRE 379 (384)
T ss_dssp BC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGGC---CHHHHTCC
T ss_pred ee-eccccccceecCccchhHHHHHHHHHHHHHhcccccc---cHHHHhhh
Confidence 99 9999999999999999999999999999997544332 56666644
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=98.94 E-value=2.2e-08 Score=109.09 Aligned_cols=299 Identities=18% Similarity=0.174 Sum_probs=177.0
Q ss_pred cEEEEeeccccCCcCCC-CCeeEEEEcCCCCCchhhHH----HHHHHHHhcCCCceeEeeecCCCcceEEEEEcCeeeeE
Q 006232 7 LVLIGLGYDKYSVHGPG-ADIDTLCVGPRHATREEDFF----GELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDL 81 (655)
Q Consensus 7 ~~L~~FGSyrLGV~~p~-SDID~lcv~P~~vtr~edFF----~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~IDL 81 (655)
++++..|||+-|.+++| ||||+.++.|....++ ++= ..+.+.|++ . .+.-|.-|-+...+.|+++|+
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e-~l~~~~l~~~~e~l~~------~-~~~ya~hpyV~~~f~g~~vDV 111 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKE-ELRERGLEIGKAVLDS------Y-EIRYAEHPYVHGVVKGVEVDV 111 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHH-HHHHHHHHHHHHHSSS------E-EEEESSSEEEEEEETTEEEEE
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCCCHH-HHHHHHHHHHHHHHHH------h-hhhccCCceEEEEecceEEEE
Confidence 57889999999999998 8999999998776643 332 223333332 1 255666788889999999999
Q ss_pred EeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCC--CCcccch
Q 006232 82 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSN--VAGFLGG 159 (655)
Q Consensus 82 ~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn--~~GfLGG 159 (655)
+=|=-. .+.. .+...+|- ...-++++.+...+ ++..+|.+|.|.|.-|+|++ ..+.++|
T Consensus 112 VP~y~v----~~g~-----~~~tavDr-------tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSs 172 (437)
T 1r89_A 112 VPCYKL----KEPK-----NIKSAVDR-------TPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSG 172 (437)
T ss_dssp EEEECC----SSSS-----CCCSHHHH-------HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCH
T ss_pred EEEEEc----cCCc-----cccccccC-------cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCH
Confidence 866211 1000 01111110 01123344333322 88999999999999999998 4567999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCcccccCCCCCCCCCCCceeeeCCCCCCCCcc
Q 006232 160 INWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSS 239 (655)
Q Consensus 160 iswAILVArvcQlyPnas~s~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMpIiTPa~P~~Nsa 239 (655)
|.+=||++++ .+-..+|..+ + +|..++.+. ++.+ .. .....+.|++|..|..|+|
T Consensus 173 YllELLv~~y------G~f~~vl~~~----~--~w~~~~~Id-~~~~--------~~----~~~~PlvViDPvDp~rNVA 227 (437)
T 1r89_A 173 YLCELLIVFY------GSFLETVKNA----R--RWTRRTVID-VAKG--------EV----RKGEEFFVVDPVDEKRNVA 227 (437)
T ss_dssp HHHHHHHHHH------SSHHHHHHHH----T--TCCTTEEEE-GGGT--------EE----EECSSCEEEETTEEEEETT
T ss_pred HHHHHHHHHH------cCHHHHHHHH----H--HhCCCeEEe-cCCC--------cc----cCCCCEEEECCCCCCCchh
Confidence 9999999993 2334444444 3 455566542 1110 00 0124578999999999999
Q ss_pred cccChhhHHHHHHHHHHHHHHHHHHHhccCCCCCccccCcc--------chh---h-hcccEEEEEEEecChhhhcchhh
Q 006232 240 YNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF--------TFF---E-AYKNYLRIDISAENADDLRNWKG 307 (655)
Q Consensus 240 ~NVs~STl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~--------~FF---~-~Yk~yl~I~v~a~~~e~~~~w~G 307 (655)
.++|...+..+..+-+...+ .. =.++|.|. ++- . +=.+.+.|....++.-+ ...-|
T Consensus 228 a~~s~~~~~~~~~~a~~~l~-------~p----s~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~-D~l~p 295 (437)
T 1r89_A 228 ANLSLDNLARFVHLCREFME-------AP----SLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVD-DNLYP 295 (437)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-------SC----CGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCH-HHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHh-------Cc----cHHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCc-ccchH
Confidence 99999988888776655443 22 22344332 111 1 12245666665554322 23446
Q ss_pred hhHHHHHHHHHHHhhccccceeec-cCCCCCCCCCCCcEEEEEEeeeeccCC--CCCCCceechHHHHHHHHH
Q 006232 308 WVESRLRQLTLKIERHTYNMLQCH-PHPGDFSDKSKPLYCSYFMGLQRKQGV--PVGEGEQFDIRLTVKEFKQ 377 (655)
Q Consensus 308 wVESRlR~Lv~~LE~~~~~~l~ah-p~P~~f~~~~~~~~~~yfIGL~~~~~~--~~~~~~~~DL~~~v~eF~~ 377 (655)
-++--.+.|...||+....++... .| .+. .|+.++=|...+-. ....|-.+--+...+.|.+
T Consensus 296 Ql~k~~~~i~~~L~~~gF~v~~~~~~~----~~~----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 296 QLERASRKIFEFLERENFMPLRSAFKA----SEE----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEE----CSS----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecccc----cCC----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 666666777778888776666554 44 222 34444444322110 1111233444455777877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=98.78 E-value=4.2e-07 Score=95.62 Aligned_cols=227 Identities=14% Similarity=0.177 Sum_probs=118.6
Q ss_pred EEEEeeccccCCcCCC-CCeeEEEEcCCCCCch------hhHHHHHHHHHhcC---CCce-eEeee-cCCCcc-eEEEEE
Q 006232 8 VLIGLGYDKYSVHGPG-ADIDTLCVGPRHATRE------EDFFGELHQMLTEM---PEVT-ELHPV-PDAHVP-VMKFKF 74 (655)
Q Consensus 8 ~L~~FGSyrLGV~~p~-SDID~lcv~P~~vtr~------edFF~~l~~~L~~~---~~V~-~l~~V-~~ArVP-IIKf~~ 74 (655)
+++..|||+-|.+.++ ||||++++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~ 135 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVL 135 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEE
T ss_pred EEEEecCcCCCcccCCCCceeEEEEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEE
Confidence 6789999999999986 8999999888754332 13444455555531 1121 12111 011355 366666
Q ss_pred ------cCeeeeEEeeeccccccCCCCCCChhh---hhccchhhhhhhccchhh---HHHHHHhc-CCchhHHHHHHHHH
Q 006232 75 ------SGVSIDLLYARLSLWVIPEDLDISQDS---ILQNADEQTVRSLNGCRV---TDQILRLV-PKIQNFRTTLRCMR 141 (655)
Q Consensus 75 ------~GI~IDL~fa~l~~~~ipe~ldl~~d~---lL~~lDe~svrSLNG~Rv---td~IlrlV-Pn~~~FR~lLR~IK 141 (655)
.|++||++=|--....+...-....+. ++..... ..-.|.+. +..-.+.+ .+...++.++|.+|
T Consensus 136 ~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~~y~~li~~~~~---~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK 212 (349)
T 1px5_A 136 SSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS---RGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVK 212 (349)
T ss_dssp EETTTTEEEEEEEEEEECSSCSCCTTSCCCHHHHHHHHHHHHH---HTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred EccCcCCceEEEEEEehhhhcccccccCCChHHHHHHHhhccc---cccCccchhcCHHHHHHHHHhCcHHHHHHHHHHH
Confidence 579999887633211110000000111 1110000 00012221 11112222 23468999999999
Q ss_pred HHHHHcCCCCCCCcccchHHHHHHHHHHHhhCCCC---CHHHHHHHHHHhhccCCCCCceeecccccCCCcccccCCCCC
Q 006232 142 FWAKRRGVYSNVAGFLGGINWALLVARICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRN 218 (655)
Q Consensus 142 ~WAKrRGIYsn~~GfLGGiswAILVArvcQlyPna---s~s~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~ 218 (655)
+|-++.+. ....+.+.||.+-+|+++.....+.. +..+-+..+|++-++|. +..| .|..-++
T Consensus 213 ~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i-------------~w~~~y~ 277 (349)
T 1px5_A 213 HWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCI-------------FWEAYYD 277 (349)
T ss_dssp HHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEE-------------CCCSSCC
T ss_pred HHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-ccce-------------eeecccc
Confidence 99988764 22245789999999999988765543 45566788888877763 1122 2332211
Q ss_pred CCC-----------CCCceeeeCCCCCCCCcccccChhhHHHHHHH
Q 006232 219 PKD-----------KYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 253 (655)
Q Consensus 219 ~~d-----------r~hlMpIiTPa~P~~Nsa~NVs~STl~vI~~E 253 (655)
..+ +...--|++|+.|..|++.. +......+..|
T Consensus 278 ~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 278 FTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp SSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHH
T ss_pred ccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHH
Confidence 111 01123699999999998877 76667766643
No 12
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=96.62 E-value=0.0034 Score=55.76 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=34.6
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhc
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 52 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~ 52 (655)
++...++-||||+-|-+.++||||++++.+...+.. + +..+...|.+
T Consensus 25 ~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~-~-~~~l~~~l~~ 71 (114)
T 1no5_A 25 VPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFL-A-RDRLKEAFSE 71 (114)
T ss_dssp CTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHH-H-HHHHHHHHHH
T ss_pred CCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHH-H-HHHHHHHHHh
Confidence 355789999999999999999999999887644421 2 2345555554
No 13
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.30 E-value=0.0051 Score=53.16 Aligned_cols=31 Identities=19% Similarity=0.020 Sum_probs=28.4
Q ss_pred CCCcEEEEeeccccCCcCCC-CCeeEEEEcCC
Q 006232 4 YLPLVLIGLGYDKYSVHGPG-ADIDTLCVGPR 34 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~-SDID~lcv~P~ 34 (655)
|+...++-|||+.-|-+.++ ||||++++.+.
T Consensus 15 ~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 15 VQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 66789999999999999999 99999998875
No 14
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=95.53 E-value=0.0042 Score=53.89 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=27.3
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCC
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRH 35 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~ 35 (655)
|+-..++-||||.-|-+.++||||++++.+..
T Consensus 23 ~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 23 HGAVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HTCSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred cCCcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 44567999999999999999999998877643
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=95.26 E-value=0.021 Score=50.91 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCC-cEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHH
Q 006232 4 YLP-LVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGEL 46 (655)
Q Consensus 4 ~p~-~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l 46 (655)
||+ ..++-|||+.-|-+.++||||++++....... +++..+
T Consensus 30 ~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~--~~~~~~ 71 (111)
T 2rff_A 30 FPNLEEVYIFGSRARGDYLDTSDIDILFVFKGIKEM--NVFDRM 71 (111)
T ss_dssp CTTEEEEEEESHHHHSCCCTTCCEEEEEEESSCTTC--CHHHHH
T ss_pred cCCccEEEEEeeeecCCCCCCCCEEEEEEecCCCCh--hHHHHH
Confidence 544 46999999999999999999999988754332 455443
No 16
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=93.74 E-value=2.4 Score=45.34 Aligned_cols=209 Identities=13% Similarity=0.036 Sum_probs=120.3
Q ss_pred EEEEeeccccCCcCCCC-CeeEEEEcCCCCCch--hhHHHHHHHHHhcCCCceeEe-eecCCCcceEEEEEcC--eeeeE
Q 006232 8 VLIGLGYDKYSVHGPGA-DIDTLCVGPRHATRE--EDFFGELHQMLTEMPEVTELH-PVPDAHVPVMKFKFSG--VSIDL 81 (655)
Q Consensus 8 ~L~~FGSyrLGV~~p~S-DID~lcv~P~~vtr~--edFF~~l~~~L~~~~~V~~l~-~V~~ArVPIIKf~~~G--I~IDL 81 (655)
.+...|||.-|.++.|. |+|++|++..-.|.+ +....++.+-|+....-..+. .+.+|-+ .| .-.+ +.|=|
T Consensus 75 ~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~-~I--~~~~~~v~i~I 151 (364)
T 4at7_A 75 EVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGF-EI--SSSDATVKILI 151 (364)
T ss_dssp EEEEEHHHHHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEE-EE--ECSSCEEEEEE
T ss_pred eeEEeccccCCceecCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceE-EE--ecCCCcEEEEE
Confidence 47889999999999987 889999998887763 112334444455432100111 1111111 00 0011 12222
Q ss_pred EeeeccccccCCCCCCChhhhhccch-hhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCcccchH
Q 006232 82 LYARLSLWVIPEDLDISQDSILQNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGI 160 (655)
Q Consensus 82 ~fa~l~~~~ipe~ldl~~d~lL~~lD-e~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfLGGi 160 (655)
......... +..+. .+| ..|..+|-..|-+..+.....+ ...+.++|.+|.-.+|.. .++-|.++
T Consensus 152 t~tsp~lrk------~dp~~---~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~w 217 (364)
T 4at7_A 152 TTVPPNLRK------LDPEL---HLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPW 217 (364)
T ss_dssp EECHHHHHT------CCTTT---BCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHH
T ss_pred EeCChhhcc------CChhH---hcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHH
Confidence 221111111 01111 123 4577778888988877776664 667889999999666542 23568886
Q ss_pred HHHHHHHHHHhhCC---CCCHHHHHHHHHHhhcc-CCCCCceeecccccCCCcccccCCCCCCCCCCCceeeeCCCCC-C
Q 006232 161 NWALLVARICQLYP---NAVPSMLVSRFFRVYTQ-WRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP-C 235 (655)
Q Consensus 161 swAILVArvcQlyP---nas~s~LL~~FF~~Ys~-WdWp~PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMpIiTPa~P-~ 235 (655)
.+-+|+.+..-.-| ..++++-+.++|+..+. +=-|... -|.+|+.+ .
T Consensus 218 aLELL~~~Ai~s~~~~~~l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~ 269 (364)
T 4at7_A 218 ILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGN 269 (364)
T ss_dssp HHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSC
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCC
Confidence 66666666555444 36789999999999873 3222110 13456666 4
Q ss_pred CCcccccChhhHHHHHHHHHHHHHHH
Q 006232 236 MNSSYNVSTSTLRIMMDEFQRGHEIC 261 (655)
Q Consensus 236 ~Nsa~NVs~STl~vI~~EF~RA~~Il 261 (655)
.++....|......|..--|.+.+++
T Consensus 270 ~~v~~~lt~qq~e~it~sAQ~~LRll 295 (364)
T 4at7_A 270 FRVHTVMTLEQQDMVCYTAQTLVRIL 295 (364)
T ss_dssp CBGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhccCCHHHHHHHHHHHHHHHHHH
Confidence 66666677666777776666666655
No 17
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=92.84 E-value=0.15 Score=49.17 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhc--CCCce-eEeeecCCCcceEEEEE--cCee
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE--MPEVT-ELHPVPDAHVPVMKFKF--SGVS 78 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~--~~~V~-~l~~V~~ArVPIIKf~~--~GI~ 78 (655)
+|++++..-||||=|-.+-+ |||+|+..|. ...+.+.|.+ .+.++ ++..-.+.++-+ ++.. .|+.
T Consensus 29 ~~g~~v~iaGS~RRgket~g-DiDiLit~~~--------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~r 98 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKMLN-DVDLLIIVPE--------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTYQ 98 (174)
T ss_dssp ECTTTEEEEEHHHHTCSEEC-CEEEEEEESS--------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCEE
T ss_pred CCCcEEEEeccccCCCCCCC-CEEEEEecCC--------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCceE
Confidence 68889999999999987655 9999998874 1345566777 78887 665555554333 3333 6899
Q ss_pred eeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCccc
Q 006232 79 IDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 157 (655)
Q Consensus 79 IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfL 157 (655)
|||.++..... .-.++-.--+ +.| .|.++.||++||.-=|-+|..
T Consensus 99 VDl~~vp~~~f------------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e~Gl~ 143 (174)
T 1jaj_A 99 LDLFTALAEEK------------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQYGLF 143 (174)
T ss_dssp EEEEEEETTCH------------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEETTEEE
T ss_pred EEEEEeCHHHH------------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCccccc
Confidence 99999874321 0011111111 223 377889999999877777753
No 18
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=92.70 E-value=3.6 Score=44.29 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=128.5
Q ss_pred EEEeeccccCCcCCC-CCeeEEEEcCCCCCchhhHHHHHHHHHh----cCC--CceeEeeecCCCcceEEEEEc---Cee
Q 006232 9 LIGLGYDKYSVHGPG-ADIDTLCVGPRHATREEDFFGELHQMLT----EMP--EVTELHPVPDAHVPVMKFKFS---GVS 78 (655)
Q Consensus 9 L~~FGSyrLGV~~p~-SDID~lcv~P~~vtr~edFF~~l~~~L~----~~~--~V~~l~~V~~ArVPIIKf~~~---GI~ 78 (655)
|.-+|+|.=|+...| -+.|+|+++..-.|. .+...+.+.|. ... ...-...+.+|.+ ...-. .+.
T Consensus 94 VMRVG~laKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i---~i~~~~~p~~~ 168 (383)
T 4at7_B 94 VMRVGLVAKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAI---VIKNTKEPPLS 168 (383)
T ss_dssp EEECHHHHHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEE---EEECSSSSCCE
T ss_pred eeEeceecccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceE---EEecCCCCCeE
Confidence 567899999999875 489999999988886 45555555544 322 1222233344422 22211 245
Q ss_pred eeEEeeecccc----cc--CCCCCCChhhhhccch-hhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCC
Q 006232 79 IDLLYARLSLW----VI--PEDLDISQDSILQNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYS 151 (655)
Q Consensus 79 IDL~fa~l~~~----~i--pe~ldl~~d~lL~~lD-e~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYs 151 (655)
|=|.+...... .+ .+++...+.. ..|| +.|+.+|-.+|=+..+............++|.+|.-.++.--
T Consensus 169 v~I~lTSp~~re~~~~~~~~~~~~~~dp~--d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~-- 244 (383)
T 4at7_B 169 LTIHLTSPVVREEMEKVLAGETLSVNDPP--DVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPT-- 244 (383)
T ss_dssp EEEEEECHHHHHHHHHHHTTCCCCCCCCT--TBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGG--
T ss_pred EEEEECCcccccchhhcccccccccCChh--hcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCC--
Confidence 55555543110 00 0111111110 1223 457888888888877776666677788999999997666532
Q ss_pred CCCcccchHHHHHHHHHHHhhCC--CCCHHHHHHHHHHhhccC-CCCC-ceeecccccCCCcccccCCCCCCCCCCCcee
Q 006232 152 NVAGFLGGINWALLVARICQLYP--NAVPSMLVSRFFRVYTQW-RWPN-PVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 227 (655)
Q Consensus 152 n~~GfLGGiswAILVArvcQlyP--nas~s~LL~~FF~~Ys~W-dWp~-PV~L~~i~~g~lg~~vWdP~~~~~dr~hlMp 227 (655)
++-|.++.+=+|+.+..-. + ..++++-+.++|+..+.- --|. | -
T Consensus 245 --~~pL~~waLELL~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~~p-----------------------------g 292 (383)
T 4at7_B 245 --WGPLRGWPLELLCEKSIGT-ANRPMGAGEALRRVLECLASGIVMPDGS-----------------------------G 292 (383)
T ss_dssp --GGGGTTHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTTSC-----------------------------C
T ss_pred --cCCCcHhHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCCCC-----------------------------C
Confidence 2457777777777666542 3 357899999999998742 2221 1 2
Q ss_pred eeCCCC--CCCCcccccChhhHHHHHHHHHHHHHHH
Q 006232 228 IITPAY--PCMNSSYNVSTSTLRIMMDEFQRGHEIC 261 (655)
Q Consensus 228 IiTPa~--P~~Nsa~NVs~STl~vI~~EF~RA~~Il 261 (655)
|.+|+. |..|.+ ..+....+.|..+-+.+.+++
T Consensus 293 I~DPcEk~pt~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 293 IYDPCEKEATDAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp CBCTTCSSCCBTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 456777 655555 566667788888888777765
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.52 E-value=0.34 Score=51.03 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCch---hhHHHHHHHHHhcCCCceeEeeecCCCcceE-EEEE------
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATRE---EDFFGELHQMLTEMPEVTELHPVPDAHVPVM-KFKF------ 74 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~---edFF~~l~~~L~~~~~V~~l~~V~~ArVPII-Kf~~------ 74 (655)
|...+..-||||=|-.+ ..|||+|+..|.....+ ..++..+.+.|.+.+.|+++....+.+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 56789999999999876 56999999888432210 1578889999999999988776666654333 2222
Q ss_pred -cCeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCC
Q 006232 75 -SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 153 (655)
Q Consensus 75 -~GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~ 153 (655)
.|+.|||.++..... .-.++-.-. -..| .|.++.||+++|..=|-
T Consensus 250 ~~~~rVDl~~vp~~~~------------------------------~~aLl~fTG-S~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQY------------------------------YCGVLYFTG-SDIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGGH------------------------------HHHHHHHHC-CHHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHHH------------------------------HHHHHHhhC-CHHH---HHHHHHHHHHcCCcccc
Confidence 179999998864311 011111111 1223 47788999999987777
Q ss_pred Ccc
Q 006232 154 AGF 156 (655)
Q Consensus 154 ~Gf 156 (655)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 775
No 20
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.75 E-value=1 Score=47.36 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeec-----CCCc-ceEEEEE---
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP-----DAHV-PVMKFKF--- 74 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~-----~ArV-PIIKf~~--- 74 (655)
.|.+.+..-||||=|-.+ ..|||+|+..|..... ..++..+.+.|.+.+.|++.-... ..+. =|.++..
T Consensus 167 ~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~ 244 (335)
T 2bcq_A 167 NSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGR 244 (335)
T ss_dssp CTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTC
T ss_pred CCCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCC
Confidence 366789999999999876 4599999998865543 368888999999988887754431 1121 1112221
Q ss_pred cCeeeeEEeeeccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCC
Q 006232 75 SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVA 154 (655)
Q Consensus 75 ~GI~IDL~fa~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~ 154 (655)
.|+.|||.++..... .-.++-.-.+ ..| .|.++.||+++|.-=|-+
T Consensus 245 ~~~rVDl~~vp~~~~------------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~ 290 (335)
T 2bcq_A 245 RHRRLDIIVVPYSEF------------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEH 290 (335)
T ss_dssp CCEEEEEEECCGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSS
T ss_pred CceEEEEEEECHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcccc
Confidence 578999998764311 0011111111 223 478899999999877777
Q ss_pred ccc
Q 006232 155 GFL 157 (655)
Q Consensus 155 GfL 157 (655)
|..
T Consensus 291 Gl~ 293 (335)
T 2bcq_A 291 ALS 293 (335)
T ss_dssp CEE
T ss_pred ccc
Confidence 753
No 21
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=88.98 E-value=0.18 Score=51.76 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=26.9
Q ss_pred CCC-cEEEEeeccccCCcCCCCCeeEEEEcCC
Q 006232 4 YLP-LVLIGLGYDKYSVHGPGADIDTLCVGPR 34 (655)
Q Consensus 4 ~p~-~~L~~FGSyrLGV~~p~SDID~lcv~P~ 34 (655)
|++ .+|+-||||.-|-+.++||||++++...
T Consensus 37 ~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 37 YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 444 5799999999999999999999998764
No 22
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=88.82 E-value=0.21 Score=50.15 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.8
Q ss_pred cEEEEeeccccCCcCCCCCeeEEEEcCCC
Q 006232 7 LVLIGLGYDKYSVHGPGADIDTLCVGPRH 35 (655)
Q Consensus 7 ~~L~~FGSyrLGV~~p~SDID~lcv~P~~ 35 (655)
..|+-||||.-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 46899999999999999999999887654
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=88.04 E-value=1.2 Score=47.19 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCcee
Q 006232 4 YLPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTE 58 (655)
Q Consensus 4 ~p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~ 58 (655)
.|.+.+..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+.
T Consensus 174 ~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~~ 226 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVLY 226 (360)
T ss_dssp CTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCeee
Confidence 367899999999999877 4599999998865433 3688899999998888763
No 24
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=82.97 E-value=3.7 Score=45.90 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEEcCeeeeEEee
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYA 84 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~IDL~fa 84 (655)
+..++..-||||=|-.+- .|||+|+..|.. ..+.+.|.+.+.|+++....+.+.-+ ++ -.|+.|||.++
T Consensus 179 ~~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~ 247 (575)
T 3b0x_A 179 GVERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVV 247 (575)
T ss_dssp TCCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEE
T ss_pred CCcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEE
Confidence 457899999999998765 499999988741 24566778888888765555544332 11 26999999988
Q ss_pred eccccccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCccc
Q 006232 85 RLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 157 (655)
Q Consensus 85 ~l~~~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lLR~IK~WAKrRGIYsn~~GfL 157 (655)
....+ .-.++-.-.+ ..| .|.++.||++||.-=|-+|..
T Consensus 248 ~~~~~------------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 248 PPESY------------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp CGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred CHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 64311 0111111111 223 478899999999988888854
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=81.42 E-value=3.9 Score=43.80 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCCCCch-hhHHHHHHHHHhcCCCcee
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRHATRE-EDFFGELHQMLTEMPEVTE 58 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~-edFF~~l~~~L~~~~~V~~ 58 (655)
|.+.+..-||||=|--+- .|||+|+..|...... ..++..+.+.|.+.+.|+.
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccc
Confidence 678899999999998764 5999999888654211 1277788888988887744
No 26
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=74.82 E-value=3.8 Score=42.34 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred EEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEE-cCeeeeEEeeecc
Q 006232 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLS 87 (655)
Q Consensus 9 L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~-~GI~IDL~fa~l~ 87 (655)
|+-+||+..|-...-||||++++...... +.| .. ..-|.....+--. .++.++- ..+.| +|+.|||.|+.+.
T Consensus 44 v~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~~f-~~-~~Wl~~fG~~~~~--f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 44 CMMYGSFTKGEGDQYSDIEFYIFLKHSIT--SNF-DS-SNWLFDVAPYLML--YKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp EEECSGGGTTCCCTTCCEEEEEEECGGGT--TTC-CH-HHHHHHHCCEEEE--EECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred EEEECCccCCCCCCccceeEEEEEcCcch--hhh-hh-HHHHHHhhhhheE--eecccce-EEEEecCCcEEEEEEeeHH
Confidence 88999999999999999999887643111 122 11 1233332222111 2233333 24444 7999999999875
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=57.42 E-value=8.5 Score=41.77 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=36.9
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCC-CC-------chhhHHHHHHHHHhc
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRH-AT-------REEDFFGELHQMLTE 52 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~-vt-------r~edFF~~l~~~L~~ 52 (655)
.+.-|+.+|||+=|=-.++||||+++|.+.. .+ ....||..|.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3578999999999999999999999987643 11 113699988887765
No 28
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=52.19 E-value=7.4 Score=43.54 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=58.3
Q ss_pred EEEeeccccCCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCcceEEEEEcCeeeeEEeeeccc
Q 006232 9 LIGLGYDKYSVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 88 (655)
Q Consensus 9 L~~FGSyrLGV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArVPIIKf~~~GI~IDL~fa~l~~ 88 (655)
+..-||||=|-.+-+ |||+|+.. . . +.. |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~-~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---P-DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---H-HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---h-HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 667899999987655 99998876 1 1 121 56667776 222333222 33 89999999887431
Q ss_pred cccCCCCCCChhhhhccchhhhhhhccchhhHHHHHHhcCCchhHHHHH-HHHHHHHHHcCCCCCCCccc
Q 006232 89 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTL-RCMRFWAKRRGVYSNVAGFL 157 (655)
Q Consensus 89 ~~ipe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~lL-R~IK~WAKrRGIYsn~~GfL 157 (655)
+ .-.++-.- . .| . |.++.||++||.-=|-+|..
T Consensus 243 ~------------------------------~~al~~~T-G--~~---n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 R------------------------------GALDLLRS-G--EH---FAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp H------------------------------HHHHHHTS-C--HH---HHHHHHHHHHTTTCEEETTEEE
T ss_pred H------------------------------HHHHHHHh-h--hh---HHHHHHHHHHHcCCCcChhhcc
Confidence 1 01112121 1 12 3 78899999999888888865
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=48.00 E-value=17 Score=40.24 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=37.4
Q ss_pred CCcEEEEeeccccCCcCCCCCeeEEEEcCCCCC---------chhhHHHHHHHHHhc
Q 006232 5 LPLVLIGLGYDKYSVHGPGADIDTLCVGPRHAT---------REEDFFGELHQMLTE 52 (655)
Q Consensus 5 p~~~L~~FGSyrLGV~~p~SDID~lcv~P~~vt---------r~edFF~~l~~~L~~ 52 (655)
.+..|+-+|+|+=+=-..+||||+++|.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 457899999999999999999999998864321 013699988877665
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=47.70 E-value=14 Score=37.90 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=36.4
Q ss_pred EEEeeccccCC--cCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecC--------CCcceEEEEE-cCe
Q 006232 9 LIGLGYDKYSV--HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPD--------AHVPVMKFKF-SGV 77 (655)
Q Consensus 9 L~~FGSyrLGV--~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~--------ArVPIIKf~~-~GI 77 (655)
|+-.||+..+- ...=||+|+++++... +.|... ...|.+...+-.++...+ -.-+..-+.| +|+
T Consensus 26 v~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg~ 100 (294)
T 2pbe_A 26 VTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDGN 100 (294)
T ss_dssp EEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTSC
T ss_pred EEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCCc
Confidence 77889998844 8899999999988632 133322 122333333333332111 1224444445 699
Q ss_pred eeeEEeeecc
Q 006232 78 SIDLLYARLS 87 (655)
Q Consensus 78 ~IDL~fa~l~ 87 (655)
.|||.|+.+.
T Consensus 101 rIDl~~~~~~ 110 (294)
T 2pbe_A 101 KLDLTLIPIR 110 (294)
T ss_dssp EEEEEEEEGG
T ss_pred EEEEEEecHH
Confidence 9999999875
No 31
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=24.97 E-value=1.4e+02 Score=28.18 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=41.7
Q ss_pred cEEEEeecccc---CCcCCCCCeeEEEEcCCCCCchhhHHHHHHHHHhcCCCceeEeeecCCCc--ceEEEEEcCeeeeE
Q 006232 7 LVLIGLGYDKY---SVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV--PVMKFKFSGVSIDL 81 (655)
Q Consensus 7 ~~L~~FGSyrL---GV~~p~SDID~lcv~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~ArV--PIIKf~~~GI~IDL 81 (655)
+.-.-.|||++ |+-.+--|||+++ .+ .=...+.++|.+. +......-++... -...+.+.|+.|||
T Consensus 34 V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~-------~da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~VDl 104 (169)
T 2fcl_A 34 VNWVVTGSLSFALQGVPVEVHDIDIQT-DE-------EGAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXVEI 104 (169)
T ss_dssp CCEEEEHHHHHHHTTCCCCCCSEEEEE-CH-------HHHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEEEE
T ss_pred CCEEEeHHHHHHHcCCCCCCCccEEEe-cc-------cCHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEEEe
Confidence 34456799876 6667888999987 11 2235677777763 2222222222332 13456678999999
Q ss_pred Eee
Q 006232 82 LYA 84 (655)
Q Consensus 82 ~fa 84 (655)
...
T Consensus 105 m~~ 107 (169)
T 2fcl_A 105 MGD 107 (169)
T ss_dssp EEE
T ss_pred eec
Confidence 964
Done!