BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006235
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/631 (50%), Positives = 435/631 (68%), Gaps = 11/631 (1%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL E + IVQ + L FH + L++P+K HVL + + +++ R
Sbjct: 3 HPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTL--VSIPR 60
Query: 84 QAKVVLRAGAETHELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESI 143
+ VV ++THE++++L I SI S NI+ G+G+P + E A KLPL YP F +S+
Sbjct: 61 KIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSV 120
Query: 144 RHRGLNLSEVSCLPFTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKMQ 203
+ RGLNLSE+ C FT+GW+GE R +++ CF + + NI+ RPI GI+++ D+D M+
Sbjct: 121 KKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMK 180
Query: 204 IIKYTDRLRLPLPRAEGTDYTSAKTNP------DSVICNVTKG-GFTIEGHKVKWANWDF 256
I++Y DR +P AE T+Y +K +P S+ + +G GF I GH V WANW F
Sbjct: 181 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 240
Query: 257 HVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFG 316
H+ FD RAGIVIS ASI+D + +K RRVLYKG++SE FVPY DPT E+YFKTF D GEFG
Sbjct: 241 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 300
Query: 317 FGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPG 376
FG + SL P DCP +A+++D YV A+G P IC+FE++ GN+ WRHTE +P
Sbjct: 301 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 359
Query: 377 KVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQI 436
+ I EV+L+VR + TVGN D V+DWEF SG+IK +AL+GILE+K T+ + D+I
Sbjct: 360 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 419
Query: 437 TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKSYWT 496
E+++G LV+ N++ + HDHF YYLD D+DG NSF K+ LKT R+ + +S RKSYWT
Sbjct: 420 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKD-GSSKRKSYWT 478
Query: 497 VVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQI 556
+TAKTE++A+I +G+ PAEL+VVN N KT +GN VGYRLI P LL++DDYPQI
Sbjct: 479 TETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQI 538
Query: 557 RASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHH 616
R ++T Y VWVTAYN++E+WAGG Y D SRGDD LAVW+ +NREI NKDIV+W+ VG HH
Sbjct: 539 RGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHH 598
Query: 617 IPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
+P QEDFP+MP + FELRP+NFFE NP+L
Sbjct: 599 VPAQEDFPIMPLLSTSFELRPTNFFERNPVL 629
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/631 (50%), Positives = 435/631 (68%), Gaps = 11/631 (1%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL E + IVQ + L FH + L++P+K HVL + + +++ R
Sbjct: 8 HPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTL--VSIPR 65
Query: 84 QAKVVLRAGAETHELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESI 143
+ VV ++THE++++L I SI S NI+ G+G+P + E A KLPL YP F +S+
Sbjct: 66 KIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSV 125
Query: 144 RHRGLNLSEVSCLPFTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKMQ 203
+ RGLNLSE+ C FT+GW+GE R +++ CF + + NI+ RPI GI+++ D+D M+
Sbjct: 126 KKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMK 185
Query: 204 IIKYTDRLRLPLPRAEGTDYTSAKTNP------DSVICNVTKG-GFTIEGHKVKWANWDF 256
I++Y DR +P AE T+Y +K +P S+ + +G GF I GH V WANW F
Sbjct: 186 IVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKF 245
Query: 257 HVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFG 316
H+ FD RAGIVIS ASI+D + +K RRVLYKG++SE FVPY DPT E+YFKTF D GEFG
Sbjct: 246 HIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFG 305
Query: 317 FGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPG 376
FG + SL P DCP +A+++D YV A+G P IC+FE++ GN+ WRHTE +P
Sbjct: 306 FGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPN 364
Query: 377 KVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQI 436
+ I EV+L+VR + TVGN D V+DWEF SG+IK +AL+GILE+K T+ + D+I
Sbjct: 365 ESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEI 424
Query: 437 TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKSYWT 496
E+++G LV+ N++ + HDHF YYLD D+DG NSF K+ LKT R+ + +S RKSYWT
Sbjct: 425 KEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKD-GSSKRKSYWT 483
Query: 497 VVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQI 556
+TAKTE++A+I +G+ PAEL+VVN N KT +GN VGYRLI P LL++DDYPQI
Sbjct: 484 TETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQI 543
Query: 557 RASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHH 616
R ++T Y VWVTAYN++E+WAGG Y D SRGDD LAVW+ +NREI NKDIV+W+ VG HH
Sbjct: 544 RGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHH 603
Query: 617 IPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
+P QEDFP+MP + FELRP+NFFE NP+L
Sbjct: 604 VPAQEDFPIMPLLSTSFELRPTNFFERNPVL 634
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 317 bits (813), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 216/660 (32%), Positives = 327/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 83 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 139
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 140 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 197
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 198 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 257
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 258 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 316
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VPY DP
Sbjct: 317 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPYGDPDI 374
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK ++D G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 375 GWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 434
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGNYDY+ DW F ++GTI I
Sbjct: 435 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDA 484
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 485 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 544
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 545 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 600
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 601 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 660
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 661 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 315 bits (806), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 215/660 (32%), Positives = 326/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 83 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 139
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 140 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 197
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 198 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 257
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 258 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 316
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VPY DP
Sbjct: 317 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPYGDPDI 374
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK ++D G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 375 GWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 434
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGN DY+ DW F ++GTI I
Sbjct: 435 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDA 484
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 485 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 544
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 545 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 600
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 601 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 660
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 661 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 214/660 (32%), Positives = 326/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 83 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 139
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 140 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 197
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 198 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 257
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 258 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 316
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VP+ DP
Sbjct: 317 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPFGDPDI 374
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK ++D G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 375 GWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 434
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGN DY+ DW F ++GTI I
Sbjct: 435 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDA 484
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 485 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 544
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 545 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 600
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 601 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 660
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 661 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 313 bits (801), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 214/660 (32%), Positives = 326/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 78 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 134
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 135 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 192
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 193 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 252
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 253 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 311
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VPY DP
Sbjct: 312 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPYGDPDI 369
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK +++ G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 370 GWYFKAYLESGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 429
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGN DY+ DW F ++GTI I
Sbjct: 430 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDA 479
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 480 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 539
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 540 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 595
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 596 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 655
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 656 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 313 bits (801), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 214/660 (32%), Positives = 326/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 78 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 134
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 135 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 192
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 193 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 252
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 253 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 311
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VPY DP
Sbjct: 312 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPYGDPDI 369
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK +++ G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 370 GWYFKAYLNSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 429
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGN DY+ DW F ++GTI I
Sbjct: 430 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDA 479
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 480 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 539
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 540 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 595
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 596 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 655
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 656 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 311 bits (798), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 214/660 (32%), Positives = 325/660 (49%), Gaps = 47/660 (7%)
Query: 13 LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLS 72
L Q HPL+ L EI QA IV K+ PN F + L PDK V W
Sbjct: 78 LDQTFQVEKRPHPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAV--WAF 134
Query: 73 KQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITS-HNIYKGHGYPPFAFIEFFRASK 131
+ ++ R+A V++ G E +VDL + S I HG +F
Sbjct: 135 ALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGM--VLLDDFASVQN 192
Query: 132 LPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWY----GEHVTNRALKVVCFYRGGSPNIF 186
+ +F +++ RG+ + +V P TVG++ G R LKV+ + G N +
Sbjct: 193 IINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYW 252
Query: 187 ARPIEGISMLVDVDKMQIIKYTDRLRLPLPRA----EGTDYTSAKTNPDSVICNVTKGGF 242
A PIE + +VD+++ +I+K + +P+P +G D + P +I K +
Sbjct: 253 AHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKN-Y 311
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
TI G + W NWDFH+S ++R G +IST + D+ R+V+Y+G + VPY DP
Sbjct: 312 TITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK--RKVMYEGSLGGMIVPYGDPDI 369
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
WYFK ++ G++G G + D PSNA L+ +A G P + R I +FER++
Sbjct: 370 GWYFKAYLASGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYA 429
Query: 363 GNVAWRHTEINVPGKVIRSGEPEVS-----LVVRMVTTVGNYDYVLDWEFDKSGTIKIGV 417
G ++H E+ G+P VS LVVR ++TVGN DY+ DW F ++GTI I
Sbjct: 430 GP-EYKHQEM---------GQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDA 479
Query: 418 ALTGILEMKAT-SYTNNDQITEN--VYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFV 474
TGI +K + T +D+ ++ YGTL+ N V H H + LDLDVDG NS V
Sbjct: 480 GATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLV 539
Query: 475 KSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAEL-LVVNANQKTKLGNH 533
+ N PR S V + E +A + +P + L+ N N++ ++GN
Sbjct: 540 A--MDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKF--DPGTIRLLSNPNKENRMGNP 595
Query: 534 VGYRLIT----GQPVT--SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
V Y++I PV + + D++ R S+ Q+WVT Y+ ER+ G Y ++S
Sbjct: 596 VSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTH 655
Query: 588 DDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
D GL +S N ++N D V+W T G H+ E++P+MPT L+P NFF+ P L
Sbjct: 656 DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/572 (27%), Positives = 265/572 (46%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GNYDY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 264/572 (46%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 266/572 (46%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSA------KTNPDSVICNVTKG-GFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT +T + +G FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 264/572 (46%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 66 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 125
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 126 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 185
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 186 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 244
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 245 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 302
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 303 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 361
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 362 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 418
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 419 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 472
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 473 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 529
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 530 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 589
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 590 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 621
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 264/572 (46%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GNYDY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQAIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/572 (27%), Positives = 263/572 (45%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFKTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/572 (27%), Positives = 263/572 (45%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFATGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
H P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 HFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/572 (27%), Positives = 263/572 (45%), Gaps = 31/572 (5%)
Query: 91 AGAETHELIVDLAIGSITS--HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL 148
+GA E+ V + G++ S G P EF +L T ++ +++ R L
Sbjct: 68 SGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFEVVEQLLATDERWLKALAARNL 127
Query: 149 NLSEVSCLPFTVG--WYGEHVTNRALKVVCFYRG-GSPNIFARPIEGISMLVDVDKMQII 205
++S+V P + G Y E R L+ + F + + +A P++G+ VDV ++
Sbjct: 128 DVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVT 187
Query: 206 KYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTIEG-HKVKWANWDFH 257
+ D P+P AE +YT + T I FT+ G + ++W W
Sbjct: 188 RVIDTGVFPVP-AEHGNYTDPELTGPLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLD 246
Query: 258 VSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGF 317
V FD R G+V+ + D ++ R ++ + ++E VPY DP+ ++ + D GE+
Sbjct: 247 VGFDVREGVVLHNIAFRDG--DRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLV 304
Query: 318 GRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGK 377
G+ A SL+ DC + YL ++ A G P++ IC+ E G +A +H+++
Sbjct: 305 GQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILA-KHSDLWSGIN 363
Query: 378 VIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437
R +V+ TT+GN DY W GTI+ TG++ A +D I+
Sbjct: 364 YTRRNR---RMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNIS 420
Query: 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKL--KTARVSNVRASPRKSYW 495
+ +A A H H + LD+ +DG N + + +T N R +
Sbjct: 421 Q------LAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKR 474
Query: 496 TVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQ 555
TV+ ++ EA R G ++ N K +L VGY+L T L
Sbjct: 475 TVLTRESEAVREADARTG---RTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 531
Query: 556 IRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFH 615
RA++ +WVT Y ER+ G + +Q G GL + +++R+I+ +DIV+W+T G
Sbjct: 532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLT 591
Query: 616 HIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
P ED+P+MP GF+LRP FF+ +P+L
Sbjct: 592 AFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVL 623
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/657 (27%), Positives = 290/657 (44%), Gaps = 64/657 (9%)
Query: 24 HPLDPLNPSEIN-QAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLH 82
HP DP++ +E+ ++LI +K P+ F +D +P K ++ +L ++ GK H
Sbjct: 2 HPYDPISDAELQLTSQLIKDATKGPERPH--FIQIDRLDPPKKDMIRYLEAERTGKPLPH 59
Query: 83 --RQAKVVLRAGAETHELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFR 140
R V G + ++ +V+++ G I ++ P + +L T+P +
Sbjct: 60 ISRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVK 119
Query: 141 ESIRHRGLNLS-EVSCLPFTVGWYGEHVTNRALKVVCFYRGGSP----NIFARPIEGISM 195
I L V C P+ G + +R L Y + N ++ P++ +
Sbjct: 120 AEIEKLKLPPHVRVVCDPWMNG--TDSKEDRMLIQCYMYLASAAHPESNHYSLPLKFSPV 177
Query: 196 LVDVDKMQIIKYTDRLRLPLPRAEGTDYTSA-------KTNPD----------SVICNVT 238
+ K K+ LP E T A + +PD +I
Sbjct: 178 FECLTK----KFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGETIVPLKPLIVQQP 233
Query: 239 KG-GFTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPY 297
+G F ++GHK+ W W+F V R G +I+D K R V+Y+ +SE VPY
Sbjct: 234 EGPSFNVDGHKISWQGWEFFVIPTVREGF-----AIYDIHF-KGRSVVYRLSLSEMTVPY 287
Query: 298 MDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICI 357
DP ++ K DLG+ GFG SL DC +Y+D +G +C+
Sbjct: 288 GDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCL 347
Query: 358 FERFSGNVAWRHT--EINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKI 415
E+ G + ++HT NVP R VV+ + TV N +Y+L+ FD++G I+I
Sbjct: 348 HEQ-DGGLLYKHTNYRTNVPVIARRR-----EFVVQTIATVANXEYMLNIIFDQAGEIRI 401
Query: 416 GVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVK 475
V TGIL S D+ +GT V +A H H +++ +D VDG N+ V
Sbjct: 402 HVRATGIL-----STMPLDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVF 456
Query: 476 SKLKTARVSNVRASPRK----SYWTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLG 531
+ N + +P + TVV++ E + ++N N+ +
Sbjct: 457 DDVIRME-KNTKLNPYNVGFVTERTVVEKPGYVEQSPFTNRSYK-----IINENKINPIS 510
Query: 532 NH-VGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDG 590
V Y+++ L +D Y RA + QVWVT Y +E +A G +T+QS+ D G
Sbjct: 511 KKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTDTG 570
Query: 591 LAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
L VW+ R+ + N + V+W T+GF HIP EDFP+MP L P FF+ NP L
Sbjct: 571 LGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPAL 627
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 287/655 (43%), Gaps = 53/655 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 78
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 79 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 137
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 138 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 196
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 197 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 252
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VPY P
Sbjct: 253 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPYGSPEF 310
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 311 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 370
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
G + ++H++ N ++ LVV + T NY+Y L W F + G I++ + LT
Sbjct: 371 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLT 426
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
GIL +Y D +GT V N A NH H + +D +DG+GNS K+
Sbjct: 427 GIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 482
Query: 481 ARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVG 535
+ SP Y K T KT ++ + N N+ G
Sbjct: 483 SPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 540
Query: 536 YRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAV 593
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 541 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 600
Query: 594 WSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPLMP LRP +FF NP L
Sbjct: 601 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 655
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 287/655 (43%), Gaps = 53/655 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 7 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 62
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 63 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 121
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 122 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 180
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 181 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 236
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VPY P
Sbjct: 237 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPYGSPEF 294
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 295 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 354
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
G + ++H++ N ++ LVV + T NY+Y L W F + G I++ + LT
Sbjct: 355 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLT 410
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
GIL +Y D +GT V N A NH H + +D +DG+GNS K+
Sbjct: 411 GIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 466
Query: 481 ARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVG 535
+ SP Y K T KT ++ + N N+ G
Sbjct: 467 SPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 524
Query: 536 YRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAV 593
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 525 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 584
Query: 594 WSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPLMP LRP +FF NP L
Sbjct: 585 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 639
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 180/655 (27%), Positives = 286/655 (43%), Gaps = 53/655 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 61
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 62 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 120
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 121 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 179
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 180 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 235
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VPY P
Sbjct: 236 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPYGSPEF 293
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 294 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 353
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
G + ++H++ N ++ LVV + T N +Y L W F + G I++ + LT
Sbjct: 354 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLT 409
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
GIL +Y D +GT V N A NH H + +D +DG+GNS K+
Sbjct: 410 GIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 465
Query: 481 ARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVG 535
+ SP Y K T KT ++ + N N+ G
Sbjct: 466 SPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 523
Query: 536 YRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAV 593
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 524 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 583
Query: 594 WSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPLMP LRP +FF NP L
Sbjct: 584 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 638
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 179/655 (27%), Positives = 285/655 (43%), Gaps = 53/655 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 78
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 79 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 137
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 138 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 196
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 197 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 252
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VP P
Sbjct: 253 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPAGSPEF 310
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 311 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 370
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
G + ++H++ N ++ LVV + T N +Y L W F + G I++ + LT
Sbjct: 371 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLT 426
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
GIL +Y D +GT V N A NH H + +D +DG+GNS K+
Sbjct: 427 GIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKS 482
Query: 481 ARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVG 535
+ SP Y K T KT ++ + N N+ G
Sbjct: 483 SPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPS 540
Query: 536 YRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAV 593
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 541 YKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMRE 600
Query: 594 WSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPLMP LRP +FF NP L
Sbjct: 601 WIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 655
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 178/653 (27%), Positives = 284/653 (43%), Gaps = 53/653 (8%)
Query: 26 LDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQA 85
LDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRLAY 68
Query: 86 KVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIR 144
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 69 YVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQCV 127
Query: 145 HRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLVDV 199
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +VD
Sbjct: 128 LSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDT 186
Query: 200 DKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GFTI 244
++ ++I + +P R + + + A P +I NVT+ F +
Sbjct: 187 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 242
Query: 245 EGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEW 304
G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VPY P
Sbjct: 243 TGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPYGSPEFPH 300
Query: 305 YFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGN 364
K +D+GE+G G L DC YLD + + G P +CI E G
Sbjct: 301 QRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG- 359
Query: 365 VAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGI 422
+ ++H++ N ++ LVV + T N +Y L W F + G I++ + LTGI
Sbjct: 360 LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGI 416
Query: 423 LEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTAR 482
L +Y D +GT V N A NH H + +D +DG+GNS K++
Sbjct: 417 L----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSP 472
Query: 483 VSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVGYR 537
SP Y K T KT ++ + N N+ G Y+
Sbjct: 473 YP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYK 530
Query: 538 LITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAVWS 595
L++ Q L + RA + + V V Y + + G + Q GD G+ W
Sbjct: 531 LVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWI 590
Query: 596 SRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
E I+N DI+ ++T G H P EDFPLMP LRP +FF NP L
Sbjct: 591 GDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGL 643
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 177/653 (27%), Positives = 283/653 (43%), Gaps = 53/653 (8%)
Query: 26 LDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQA 85
LDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 13 LDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRLAY 68
Query: 86 KVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIR 144
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 69 YVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQCV 127
Query: 145 HRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLVDV 199
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +VD
Sbjct: 128 LSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIVDT 186
Query: 200 DKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GFTI 244
++ ++I + +P R + + + A P +I NVT+ F +
Sbjct: 187 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 242
Query: 245 EGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEW 304
G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VPY P
Sbjct: 243 TGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPYGSPEFPH 300
Query: 305 YFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGN 364
K +D+GE+G G L DC YLD + + G P +CI E G
Sbjct: 301 QRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG- 359
Query: 365 VAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGI 422
+ ++H++ N ++ LVV + T N +Y L W F + G I++ + LTGI
Sbjct: 360 LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGI 416
Query: 423 LEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTAR 482
L +Y D +GT V N A NH H + +D +DG+GNS K++
Sbjct: 417 L----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSP 472
Query: 483 VSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHVGYR 537
SP Y K T KT ++ + N N+ G Y+
Sbjct: 473 YP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYK 530
Query: 538 LITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAVWS 595
L++ Q L + RA + + V V Y + + G + Q GD G+ W
Sbjct: 531 LVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWI 590
Query: 596 SRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647
E I+N DI+ ++T G H P EDFPL P LRP +FF NP L
Sbjct: 591 GDGSENIDNTDILFFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGL 643
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 179/657 (27%), Positives = 286/657 (43%), Gaps = 55/657 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 9 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 64
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 65 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 123
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 124 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 182
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 183 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 238
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VP+ P
Sbjct: 239 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPFGSPEF 296
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 297 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 356
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGN-YDYVLDWEFDKSGTIKIGVAL 419
G + ++H++ N ++ LVV + T N +Y L W F + G I++ + L
Sbjct: 357 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRL 412
Query: 420 TGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLK 479
TGIL +Y D +GT V N A NH H + +D +DG+GNS K
Sbjct: 413 TGIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAK 468
Query: 480 TARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHV 534
++ SP Y K T KT ++ + N N+ G
Sbjct: 469 SSPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPP 526
Query: 535 GYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLA 592
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 527 SYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMR 586
Query: 593 VWSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPL-MPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPL MP LRP +FF NP L
Sbjct: 587 EWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGL 643
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 179/657 (27%), Positives = 286/657 (43%), Gaps = 55/657 (8%)
Query: 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHR 83
HPLDPL+ +EI A V+ G ++F++V L EP + ++W K++ G L
Sbjct: 6 HPLDPLSTAEIKAATNTVKSYFAGK--KISFNTVTLREPARKAYIQW--KEQGGPLPPRL 61
Query: 84 QAKVVLRAGAE-THELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRES 142
V+L AG E +VDLA S+ + P + ++ P E
Sbjct: 62 AYYVILEAGKPGVKEGLVDLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQ 120
Query: 143 IRHRGLNLSE---VSCLPFTVGWYGEHVTNRALK-VVCFYRGGSPNI-FARPIEGISMLV 197
G+ +E V C P+T+G+ T + L+ + +YR + ++ P++ +V
Sbjct: 121 CVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCPIV 179
Query: 198 DVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVI------------CNVTKG---GF 242
D ++ ++I + +P R + + + A P +I NVT+ F
Sbjct: 180 DTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSF 235
Query: 243 TIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTN 302
+ G+ ++W+N+ FH+ F+ R GIV+S S ++D N R + ++ +SE VP+ P
Sbjct: 236 KMTGNVMEWSNFKFHIGFNYREGIVLSDVS-YNDHGN-VRPIFHRISLSEMIVPFGSPEF 293
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFS 362
K +D+GE+G G L DC YLD + + G P +CI E
Sbjct: 294 PHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDD 353
Query: 363 GNVAWRHTEI--NVPGKVIRSGEPEVSLVVRMVTTVGN-YDYVLDWEFDKSGTIKIGVAL 419
G + ++H++ N ++ LVV + T N +Y L W F + G I++ + L
Sbjct: 354 G-LLFKHSDFRDNFATSLVTRA---TKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIRL 409
Query: 420 TGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLK 479
TGIL +Y D +GT V N A NH H + +D +DG+GNS K
Sbjct: 410 TGIL----NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAK 465
Query: 480 TARVSNVRASPRKSYWTVV---KETAKTEAEARIRLGVEPAELL-VVNANQKTKL-GNHV 534
++ SP Y K T KT ++ + N N+ G
Sbjct: 466 SSPYP--LGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPP 523
Query: 535 GYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLA 592
Y+L++ Q L + RA + + V V Y + + G + Q GD G+
Sbjct: 524 SYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMR 583
Query: 593 VWSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPL-MPTIHGGFELRPSNFFESNPLL 647
W E I+N DI+ ++T G H P EDFPL MP LRP +FF NP L
Sbjct: 584 EWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTENPGL 640
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 185/416 (44%), Gaps = 19/416 (4%)
Query: 242 FTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPT 301
F +EG+ V + W F + +G+ + + R+ Y+ V E Y T
Sbjct: 290 FRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGE------RIAYEVSVQEAVALYGGHT 343
Query: 302 NEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERF 361
++D+G +G G L P IDCP A +LD + P + R +C+FE
Sbjct: 344 PAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMP 402
Query: 362 SGNVAWRHTEINVPGKV-IRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
+G RH N G +G LV+R +TV N DY+ D+ F +G ++ + T
Sbjct: 403 TGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNXDYIWDFIFYPNGVMEAKMHAT 462
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
G + AT YT +GT + + + H H V Y +DLDV G NSF ++K
Sbjct: 463 GYVH--ATFYTPEGL----RHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKL 516
Query: 481 ARVSNVRASPRKSYWTVVKETAKT-EAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLI 539
++N + + +++T + E +A R + + L+ + Q+ G+ YRL
Sbjct: 517 ENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRSYRLQ 576
Query: 540 TGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAV--WSSR 597
+L + ++ +Y + VT Y +SE + Y D + +
Sbjct: 577 IHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHN 636
Query: 598 NREIENKDIVLWYTVGFHHIPYQEDFP--LMPTIHGGFELRPSNFFESNPLLLRQE 651
N IEN+D+V W TVGF HIP+ ED P P GF LRP NFF +P L ++
Sbjct: 637 NENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRD 692
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 35 NQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAE 94
++ +L +Q S T+ T +++ P K HVL +L K +R + R+A+ V+ G +
Sbjct: 30 SKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPV---REARAVIFFGDQ 86
Query: 95 THELIVDLAIGSI 107
H + + A+G +
Sbjct: 87 EHPNVTEFAVGPL 99
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 181/423 (42%), Gaps = 45/423 (10%)
Query: 242 FTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPT 301
F+++G++V + W F A +G +FD + R+ Y+ + E Y T
Sbjct: 306 FSVQGNRVASSLWTFSFGLGAFSG-----PRVFDVRFQG-ERLAYEISLQEAGAVYGGNT 359
Query: 302 NEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERF 361
+MD G FG G A L +DCP A Y+D + P+ C+FE+
Sbjct: 360 PAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQN 418
Query: 362 SGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTG 421
G RH + G + LV R V+T+ N DYV D F +G I++
Sbjct: 419 KGLPLRRHHSDFL--SHYFGGVAQTVLVFRSVSTMLNXDYVWDMVFYPNGAIEV------ 470
Query: 422 ILEMKATSYTNNDQI--TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGN-------S 472
++ AT Y ++ + YG V E+ + H H Y +DLDV G N +
Sbjct: 471 --KLHATGYISSAFLFGAARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMA 528
Query: 473 FVKSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGN 532
FV + + + ++ V ++ +TE +A LG L + + Q K G+
Sbjct: 529 FVPTAIPWSPEHQIQR------LQVTRKQLETEEQAAFPLGGASPRYLYLASKQSNKWGH 582
Query: 533 HVGYRLIT----GQPVTSLLSDDDYPQIRA-SYTKYQVWVTAYNKSERWAGGFYTDQSRG 587
GYR+ T G P+ + P RA S+ +YQ+ +T ++E + +
Sbjct: 583 PRGYRIQTVSFAGGPMPQ-----NSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPW 637
Query: 588 DDGLAVWSSRNRE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHG--GFELRPSNFFESN 644
+ N E I KD+V W T GF HIP+ ED P T+ GF LRP NFF+
Sbjct: 638 TPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQE 697
Query: 645 PLL 647
P +
Sbjct: 698 PSM 700
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 158/650 (24%), Positives = 248/650 (38%), Gaps = 92/650 (14%)
Query: 56 SVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITSHNIYKG 115
SV+L+ P K L L RG R+A ++ G + + +L +G + + +
Sbjct: 98 SVELQLPPKAAALAHL---DRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRD 154
Query: 116 -----HGYP------PFAFIEFFRASKLPLTYPKFRES--------IRHRGLNLSEVSCL 156
HG P P F E+ ++ + S +HRG NL ++
Sbjct: 155 VTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTA 214
Query: 157 PFTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKM-------QIIKYTD 209
P G +RA +Y F + G+ +LV+ + Q + Y
Sbjct: 215 P-----RGLQSGDRATWFGLYYNISGAGFFLHHV-GLELLVNHKALDPARWTIQKVFYQG 268
Query: 210 RLRLPLPRAEGTDYTSAKTNPDSVICNVTKGG-----------------------FTIEG 246
R L + E + + N + N T G F+++G
Sbjct: 269 RYYDSLAQLE-AQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQG 327
Query: 247 HKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYF 306
+V + W F A +G IFD + R++Y+ + E Y +
Sbjct: 328 SRVASSLWTFSFGLGAFSG-----PRIFDVRFQG-ERLVYEISLQEALAIYGGNSPAAMT 381
Query: 307 KTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVA 366
++D G FG G+ L +DCP A Y+D + P+ C+FE+ G
Sbjct: 382 TRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 440
Query: 367 WRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMK 426
RH G E LVVR ++T+ N DYV D F SG I+I
Sbjct: 441 RRHHSDLYSHYF--GGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEI--------RFY 490
Query: 427 ATSYTNNDQI--TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVS 484
AT Y ++ + YG V+E+ + H H + +DLDV G N + ++
Sbjct: 491 ATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMA 550
Query: 485 NVRASPRKSY--WTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRL---- 538
V SP V ++ + E +A +G L + +N K G+ GYR+
Sbjct: 551 -VPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLS 609
Query: 539 ITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRN 598
G+P L + S+ +YQ+ VT + E + + + N
Sbjct: 610 FAGEP----LPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 665
Query: 599 RE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHG--GFELRPSNFFESNP 645
E I KD+V W T GF HIP+ ED P T+ GF LRP NFF+ +P
Sbjct: 666 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 158/650 (24%), Positives = 248/650 (38%), Gaps = 92/650 (14%)
Query: 56 SVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITSHNIYKG 115
SV+L+ P K L L RG R+A ++ G + + +L +G + + +
Sbjct: 83 SVELQLPPKAAALAHL---DRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRD 139
Query: 116 -----HGYP------PFAFIEFFRASKLPLTYPKFRES--------IRHRGLNLSEVSCL 156
HG P P F E+ ++ + S +HRG NL ++
Sbjct: 140 VTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTA 199
Query: 157 PFTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKM-------QIIKYTD 209
P G +RA +Y F + G+ +LV+ + Q + Y
Sbjct: 200 P-----RGLQSGDRATWFGLYYNISGAGFFLHHV-GLELLVNHKALDPARWTIQKVFYQG 253
Query: 210 RLRLPLPRAEGTDYTSAKTNPDSVICNVTKGG-----------------------FTIEG 246
R L + E + + N + N T G F+++G
Sbjct: 254 RYYDSLAQLE-AQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQG 312
Query: 247 HKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYF 306
+V + W F A +G IFD + R++Y+ + E Y +
Sbjct: 313 SRVASSLWTFSFGLGAFSG-----PRIFDVRFQG-ERLVYEISLQEALAIYGGNSPAAMT 366
Query: 307 KTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVA 366
++D G FG G+ L +DCP A Y+D + P+ C+FE+ G
Sbjct: 367 TRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 425
Query: 367 WRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMK 426
RH G E LVVR ++T+ N DYV D F SG I+I
Sbjct: 426 RRHHSDLYSHYF--GGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEI--------RFY 475
Query: 427 ATSYTNNDQI--TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVS 484
AT Y ++ + YG V+E+ + H H + +DLDV G N + ++
Sbjct: 476 ATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMA 535
Query: 485 NVRASPRKSY--WTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRL---- 538
V SP V ++ + E +A +G L + +N K G+ GYR+
Sbjct: 536 -VPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLS 594
Query: 539 ITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRN 598
G+P L + S+ +YQ+ VT + E + + + N
Sbjct: 595 FAGEP----LPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 650
Query: 599 RE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHG--GFELRPSNFFESNP 645
E I KD+V W T GF HIP+ ED P T+ GF LRP NFF+ +P
Sbjct: 651 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 158/650 (24%), Positives = 248/650 (38%), Gaps = 92/650 (14%)
Query: 56 SVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVDLAIGSITSHNIYKG 115
SV+L+ P K L L RG R+A ++ G + + +L +G + + +
Sbjct: 70 SVELQLPPKAAALAHL---DRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRD 126
Query: 116 -----HGYP------PFAFIEFFRASKLPLTYPKFRES--------IRHRGLNLSEVSCL 156
HG P P F E+ ++ + S +HRG NL ++
Sbjct: 127 VTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTA 186
Query: 157 PFTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKM-------QIIKYTD 209
P G +RA +Y F + G+ +LV+ + Q + Y
Sbjct: 187 P-----RGLQSGDRATWFGLYYNISGAGFFLHHV-GLELLVNHKALDPARWTIQKVFYQG 240
Query: 210 RLRLPLPRAEGTDYTSAKTNPDSVICNVTKGG-----------------------FTIEG 246
R L + E + + N + N T G F+++G
Sbjct: 241 RYYDSLAQLE-AQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQG 299
Query: 247 HKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYF 306
+V + W F A +G IFD + R++Y+ + E Y +
Sbjct: 300 SRVASSLWTFSFGLGAFSG-----PRIFDVRFQG-ERLVYEISLQEALAIYGGNSPAAMT 353
Query: 307 KTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVA 366
++D G FG G+ L +DCP A Y+D + P+ C+FE+ G
Sbjct: 354 TRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPL 412
Query: 367 WRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMK 426
RH G E LVVR ++T+ N DYV D F SG I+I
Sbjct: 413 RRHHSDLYSHYF--GGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEI--------RFY 462
Query: 427 ATSYTNNDQI--TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVS 484
AT Y ++ + YG V+E+ + H H + +DLDV G N + ++
Sbjct: 463 ATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMA 522
Query: 485 NVRASPRKSY--WTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRL---- 538
V SP V ++ + E +A +G L + +N K G+ GYR+
Sbjct: 523 -VPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLS 581
Query: 539 ITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRN 598
G+P L + S+ +YQ+ VT + E + + + N
Sbjct: 582 FAGEP----LPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFIN 637
Query: 599 RE-IENKDIVLWYTVGFHHIPYQEDFPLMPTIHG--GFELRPSNFFESNP 645
E I KD+V W T GF HIP+ ED P T+ GF LRP NFF+ +P
Sbjct: 638 NETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 178/405 (43%), Gaps = 30/405 (7%)
Query: 249 VKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYM--DPTNEWYF 306
V W ++ F+++F+ G+ S+FD K K +RVLY+ + E Y DP
Sbjct: 347 VTWMDFSFYIAFNRDTGL-----SLFDIKY-KGQRVLYELGLQEALAHYAANDPVQS--S 398
Query: 307 KTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVA 366
++D +GFG A L DCPS A YL+ D + +C+FE +
Sbjct: 399 VAYLD-SYYGFGPYAFELLKGYDCPSYASYLNTSFY-KDEETHTHVDSLCLFEFDADYPM 456
Query: 367 WRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMK 426
RH+ S V +R V+T+GN DY+ + F GTI + V +G ++
Sbjct: 457 ARHST-----SEFVSVTKNVYFTLRSVSTIGNXDYMFSYNFHMDGTIGVEVRASGYIQ-- 509
Query: 427 ATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSF-VKSKLKTARVSN 485
+ Y NN +G + ++ HDH + + D D+ G N+ + S + + +
Sbjct: 510 SAYYANNQD-----FGYQIHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFS 564
Query: 486 VRASPRKSYWTVVKETAKTEAEARIRLGVE-PAELLVVNANQKTKLGNHVGYRLITGQPV 544
+ ++ + + +E EAR+ G +L VVN ++ K G GYR++
Sbjct: 565 WSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGT 624
Query: 545 TSLLSDDDYPQIRAS-YTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIEN 603
L + + A+ + +Y V VT + E + Y Q + + + N E N
Sbjct: 625 AHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFFNGESLN 684
Query: 604 K-DIVLWYTVGFHHIPYQEDFP--LMPTIHGGFELRPSNFFESNP 645
+ D+V+W +G HH+P+ D P + T H G P N+ +P
Sbjct: 685 QTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDP 729
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 172/412 (41%), Gaps = 39/412 (9%)
Query: 245 EGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYM--DPTN 302
E W +W F+ S+ GI F D K R++Y+ + E Y DP N
Sbjct: 338 EEEYFSWMDWGFYTSWSRDTGIS------FYDITFKGERIVYELSLQELIAEYGSDDPFN 391
Query: 303 EWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVI--CIFER 360
+ TF +G G SL P DCP+ A Y D + ++R + C+FE
Sbjct: 392 Q---HTFYSDISYGVGNRF-SLVPGYDCPATAGYFTTDTFEYD---EFYNRTLSYCVFEN 444
Query: 361 FSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALT 420
RHT G + +L VR ++T+GN DY ++F GT+++ V
Sbjct: 445 QEDYSLLRHT-----GASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLEVSVRAA 499
Query: 421 GILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKT 480
G ++ Y N + T YG + + HDH + Y +DLDV G N K +K
Sbjct: 500 GYIQ---AGYWNPE--TSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKD 554
Query: 481 ARVSNVRASPRKSYWTVVKETAKTEAEARIRLGVEPAE-----LLVVNANQKTKLGNHVG 535
V A P Y T K+ A+ E G+ E LL+ +A + GN
Sbjct: 555 VDVEYPWA-PGTVYNT--KQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRA 611
Query: 536 YRLIT-GQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVW 594
Y ++ G V ++ + ++ + +++T + E + + D +
Sbjct: 612 YNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFN 671
Query: 595 SSRNRE-IENKDIVLWYTVGFHHIPYQEDFP--LMPTIHGGFELRPSNFFES 643
+ + E ++ +DIV W +G HH+P D P + T H F L P N+F+S
Sbjct: 672 AFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDS 723
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 172/406 (42%), Gaps = 39/406 (9%)
Query: 251 WANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYM--DPTNEWYFKT 308
W +W F+ S+ GI F D K R++Y+ + E Y DP N+ T
Sbjct: 304 WMDWGFYTSWSRDTGIS------FYDITFKGERIVYELSLQELIAEYGSDDPFNQ---HT 354
Query: 309 FMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVI--CIFERFSGNVA 366
F +G G SL P DCPS A Y D + ++R + C+FE
Sbjct: 355 FYSDISYGVGNRF-SLVPGYDCPSTAGYFTTDTFEYD---EFYNRTLSYCVFENQEDYSL 410
Query: 367 WRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMK 426
RHT G + +L VR ++T+GN DY ++F GT+++ V G ++
Sbjct: 411 LRHT-----GASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDGTLEVSVRAAGYIQ-- 463
Query: 427 ATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNV 486
Y N + T YG + + HDH + Y +DLDV G N + +K V
Sbjct: 464 -AGYWNPE--TSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDVDVEYP 520
Query: 487 RASPRKSYWTVVKETAKTEAEARIRLGVEPAE-----LLVVNANQKTKLGNHVGYRLIT- 540
A P Y T K+ A+ E G+ E LL+ +A + GN Y ++
Sbjct: 521 WA-PGTVYNT--KQIAREVFENEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPG 577
Query: 541 GQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNRE 600
G V ++ + ++ + +++T + +E + + D + + + E
Sbjct: 578 GGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFLDDE 637
Query: 601 -IENKDIVLWYTVGFHHIPYQEDFP--LMPTIHGGFELRPSNFFES 643
++ +DIV W +G HH+P D P + T H F L P N+F+S
Sbjct: 638 SLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDS 683
>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
pdb|2XPK|B Chain B, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
Length = 594
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 317 FGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAW 367
F +A G ++P+I CP+ EY G + ++GQP+ ++R+ S V W
Sbjct: 288 FVKAKGDVKPLITCPT--EYDTGAMV-SNGQPRAYTRIFAETVDPSIEVMW 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,863,444
Number of Sequences: 62578
Number of extensions: 921278
Number of successful extensions: 2130
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 40
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)