Query 006235
Match_columns 655
No_of_seqs 152 out of 715
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02566 amine oxidase (copper 100.0 3E-189 6E-194 1582.4 71.3 644 3-648 1-646 (646)
2 PRK11504 tynA tyramine oxidase 100.0 6E-188 1E-192 1571.5 69.5 615 19-654 9-636 (647)
3 PRK14696 tynA tyramine oxidase 100.0 7E-185 1E-189 1559.2 69.0 632 5-652 64-719 (721)
4 COG3733 TynA Cu2+-containing a 100.0 9E-182 2E-186 1444.8 56.1 612 22-653 28-653 (654)
5 KOG1186 Copper amine oxidase [ 100.0 8E-159 2E-163 1304.0 53.6 624 23-654 27-657 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 1E-141 3E-146 1153.8 35.8 410 231-653 1-412 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 6.6E-24 1.4E-28 190.1 7.5 98 119-216 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 1.8E-19 3.8E-24 157.1 3.1 85 24-112 1-85 (86)
9 PF04270 Strep_his_triad: Stre 44.4 12 0.00026 30.2 1.2 19 25-43 34-52 (53)
10 PF02728 Cu_amine_oxidN3: Copp 39.8 7.7 0.00017 34.8 -0.6 82 28-112 2-93 (101)
11 PF11148 DUF2922: Protein of u 29.5 79 0.0017 26.4 3.9 26 21-46 18-43 (69)
No 1
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=2.6e-189 Score=1582.44 Aligned_cols=644 Identities=78% Similarity=1.313 Sum_probs=591.3
Q ss_pred cchhHHHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCC
Q 006235 3 MTIPLLVLAFLLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLH 82 (655)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~ 82 (655)
|+.+|+...|.++|+..-...|||||||++||++|++|||++.+.....++|++|+|.||+|++|++|+.+++.+.+.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~ 80 (646)
T PLN02566 1 MNIPILALVFILQCCFVASLYHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPP 80 (646)
T ss_pred CCchHHhHhhhhhcceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCC
Confidence 34556655554445554445899999999999999999999875322368999999999999999999998764434578
Q ss_pred ceeEEEEEeCCeeEEEEEeCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCCCCCCeEEccccccc
Q 006235 83 RQAKVVLRAGAETHELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGLNLSEVSCLPFTVGW 162 (655)
Q Consensus 83 R~A~vv~~~~~~~~E~vV~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~w~~G~ 162 (655)
|+|+|++..+++++|++|||+.++|++++.+++.|||+++.+|+.+||++|++||.|+|+|++|||+.++|+||||++|+
T Consensus 81 R~a~v~~~~~~~~~e~vVdl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~ 160 (646)
T PLN02566 81 RRAKVVVRAGGETYELIVDLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGW 160 (646)
T ss_pred cEEEEEEecCCCEEEEEEECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCccccc
Confidence 99997775578899999999999999999998877999999999999999999999999999999988889999999998
Q ss_pred cCCCCCeeEEEEEEEEecCCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCCCCCCCccCCCC-Cce
Q 006235 163 YGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTNPDSVICNVT-KGG 241 (655)
Q Consensus 163 ~~~~~~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~p~~~~~pe-G~s 241 (655)
++..++||++||+||+|++++|+||||||||.++||++++||++|+|.+..++|+..+.+|+.+ .+|+.+.||| |+|
T Consensus 161 ~~~~~~~R~~q~~~y~r~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~~~R~d--~kPl~i~QPegG~s 238 (646)
T PLN02566 161 YGETVTKRALKISCFYRGGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGTDFRTK--HKPFSFPCNVSDSG 238 (646)
T ss_pred CCCCCCcEEEEEEEEEcCCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCCCCCcC--CCCccccCCCCCCc
Confidence 8765679999999999998999999999999999999999999999986667777665556644 3578899999 599
Q ss_pred EEEeccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccc
Q 006235 242 FTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAA 321 (655)
Q Consensus 242 f~v~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a 321 (655)
|+|+|++|+||||+||+|||+|||||||||+|+|++++++|||+||+|||||+||||||+++|++|+|||+||||+|.+|
T Consensus 239 F~v~G~~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a 318 (646)
T PLN02566 239 FTILGHRVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSA 318 (646)
T ss_pred EEEcCCEEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeeccee
Q 006235 322 GSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDY 401 (655)
Q Consensus 322 ~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDY 401 (655)
|+|++||||||+|+|||+++.+++|+|++++|||||||+|.|||||||++++..+...+.++.+.+||||+|+|||||||
T Consensus 319 ~~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDY 398 (646)
T PLN02566 319 VTLQPLIDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDY 398 (646)
T ss_pred cccccCCCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccE
Confidence 99999999999999999999999999999999999999998799999999987765566777888999999999999999
Q ss_pred EEEEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEe
Q 006235 402 VLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTA 481 (655)
Q Consensus 402 i~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 481 (655)
||||+|||||+||+||+|||||+|+++.|...++.+..+|||+|+|+++|++|||+|||||||||||++|||+++|++++
T Consensus 399 if~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~ 478 (646)
T PLN02566 399 ILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTA 478 (646)
T ss_pred EEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEc
Confidence 99999999999999999999999988876443222236899999999999999999999999999999999999999997
Q ss_pred eccC-CCCCCcceeEEEEEEEecChHHHhHhcCCCCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccc
Q 006235 482 RVSN-VRASPRKSYWTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASY 560 (655)
Q Consensus 482 ~~~~-g~~np~~~~~~~~~t~~~tE~~a~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~f 560 (655)
+... +++||++++|++++++++||++|++++++..|.|+|+|++++|++|+|+||||+|+++++++++++|+..+||+|
T Consensus 479 ~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~f 558 (646)
T PLN02566 479 RVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAY 558 (646)
T ss_pred cCCCCCCCCCCcceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchh
Confidence 6543 359999999999999999999999999995577999999999999999999999999999999999999999999
Q ss_pred cccceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCC
Q 006235 561 TKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNF 640 (655)
Q Consensus 561 a~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nF 640 (655)
|+||||||+|+|+|+||||+|++|+++++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+||
T Consensus 559 a~~~lwVT~y~d~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nF 638 (646)
T PLN02566 559 TKYQVWVTAYNKSERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANF 638 (646)
T ss_pred hhCcEEEecCCCcccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 006235 641 FESNPLLL 648 (655)
Q Consensus 641 Fd~nP~ld 648 (655)
|++||+|.
T Consensus 639 F~~NPaL~ 646 (646)
T PLN02566 639 FESNPLLR 646 (646)
T ss_pred CCCCCCCC
Confidence 99999983
No 2
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=6.1e-188 Score=1571.48 Aligned_cols=615 Identities=34% Similarity=0.599 Sum_probs=577.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEe--CCeeE
Q 006235 19 ANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRA--GAETH 96 (655)
Q Consensus 19 ~~~~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~--~~~~~ 96 (655)
++..+|||||||++||++|++|||++.+.. ..++|.+|+|.||+|++|++|+.++. ++|+|+|++++ +++++
T Consensus 9 ~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~g~~-----~~R~a~v~~~~~~~~~~~ 82 (647)
T PRK11504 9 AAAVSHPLDPLTAAEIEAAVAILRAEGLLG-ESTRFVSIELAEPPKAEVLAFDPGDP-----IDRRAFVVLYDRATGKTY 82 (647)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEeeccCCCHHHHHhhhcCCC-----CCcEEEEEEEECCCCcEE
Confidence 444589999999999999999999987543 57899999999999999999998653 47999999996 67799
Q ss_pred EEEEeCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccCCC--CCeeEEE
Q 006235 97 ELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYGEH--VTNRALK 173 (655)
Q Consensus 97 E~vV~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~~~--~~rRl~~ 173 (655)
|++|||++++|++++.++ ++||+++.+|+.+||++|++||.|+++|++||| ++++|+||||++|+++.. .+|||+|
T Consensus 83 e~vVdL~~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~ 161 (647)
T PRK11504 83 EAVVSLTAGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLAR 161 (647)
T ss_pred EEEEECCCCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEE
Confidence 999999999999999987 579999999999999999999999999999999 578999999999988754 3699999
Q ss_pred EEEEEec-CCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCCC------CCCCccCCCCCceEEEec
Q 006235 174 VVCFYRG-GSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAKT------NPDSVICNVTKGGFTIEG 246 (655)
Q Consensus 174 ~~~~~r~-~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~------~~p~~~~~peG~sf~v~g 246 (655)
|+||+|. +++|+||||||||.++||+++||||+|+|.+..|+|+.. .+|+++++ .+|+.+.||||+||+|+|
T Consensus 162 ~~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~~~r~dlkPl~i~QPeG~sF~v~g 240 (647)
T PRK11504 162 GLAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIPPLRTDLKPLEITQPEGPSFTVDG 240 (647)
T ss_pred EEEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHccccccCCCCcceeCCCCCcEEEcC
Confidence 9999994 888999999999999999999999999998877777765 58986532 257788899999999999
Q ss_pred cEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCC
Q 006235 247 HKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQP 326 (655)
Q Consensus 247 ~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~ 326 (655)
++|+||||+||+|||+|||||||||+|+| .|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++
T Consensus 241 ~~V~W~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~l 318 (647)
T PRK11504 241 NEVEWQKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLEL 318 (647)
T ss_pred CEEEECCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCccccccccc
Confidence 99999999999999999999999999998 6788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEE
Q 006235 327 VIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWE 406 (655)
Q Consensus 327 G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~ 406 (655)
||||||+|+|||+++.+++|+|++++|||||||+| +|+||||++++++..+++|+| +||||+|+|||||||||+|+
T Consensus 319 GcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v~r~r---~LVvr~I~TVgNYdYi~~w~ 394 (647)
T PRK11504 319 GCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEVRRSR---RLVISFFATVGNYDYGFYWY 394 (647)
T ss_pred CCCCCCCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEEEecc---EEEEEEEEecccccEEEEEE
Confidence 99999999999999999999999999999999999 789999999998877666666 99999999999999999999
Q ss_pred EccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCC
Q 006235 407 FDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNV 486 (655)
Q Consensus 407 F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g 486 (655)
|||||+||++|+|||||+|+++. ...+.+||++|+|+++|++|||+|||||||||||.+|||+++|++++++ +
T Consensus 395 F~qdG~Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~--~ 467 (647)
T PRK11504 395 FYQDGTIEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPM--G 467 (647)
T ss_pred EecCceEEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCC--C
Confidence 99999999999999999987652 1224689999999999999999999999999999999999999999987 4
Q ss_pred CCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccce
Q 006235 487 RASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQV 565 (655)
Q Consensus 487 ~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~l 565 (655)
++||++++|++++|+++||++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++|++++|+..+||+||+|||
T Consensus 468 ~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~l 547 (647)
T PRK11504 468 PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHL 547 (647)
T ss_pred CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcE
Confidence 5999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCCCCCCC
Q 006235 566 WVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNP 645 (655)
Q Consensus 566 wVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP 645 (655)
|||+|+|+|+||||+|++|+.+++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+|||++||
T Consensus 548 wVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NP 627 (647)
T PRK11504 548 WVTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRNP 627 (647)
T ss_pred EEeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 006235 646 LLLRQENAE 654 (655)
Q Consensus 646 ~ldvP~~~~ 654 (655)
+||+|++..
T Consensus 628 aldvp~s~~ 636 (647)
T PRK11504 628 ALDLPPEPP 636 (647)
T ss_pred cccCCCccc
Confidence 999999853
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=6.6e-185 Score=1559.21 Aligned_cols=632 Identities=32% Similarity=0.558 Sum_probs=574.9
Q ss_pred hhHHHHHH-----HHhhhccCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCC
Q 006235 5 IPLLVLAF-----LLQCCCANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKL 79 (655)
Q Consensus 5 ~~~~~~~~-----~~~~~~~~~~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~ 79 (655)
+||-.++= |+|+.+.+..+|||||||++||++|++||+++.+.. .+++|++|+|.||+|++|++|+.+ +. ..
T Consensus 64 VPlrFisE~fg~~~~~~~~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~~-~~-~~ 140 (721)
T PRK14696 64 VSDTFINDVFQSGLDQTFQVEKRPHPLNALTADEIKQAVEIVKASADFK-PNTRFTEISLKEPDKEAVWAFALE-NK-PV 140 (721)
T ss_pred eeHHHHHHHHHhhcceeeeecCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEEEecCCCcHHHHHHHhc-CC-CC
Confidence 56644433 333345677789999999999999999999987522 468999999999999999999985 21 12
Q ss_pred CCCceeEEEEEeCCeeEEEEEeCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccc
Q 006235 80 NLHRQAKVVLRAGAETHELIVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPF 158 (655)
Q Consensus 80 ~p~R~A~vv~~~~~~~~E~vV~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w 158 (655)
+|+|+|+|+++.+++++|++|||++++|++|+.+++ +||+++.+|+.+||++|++||.|+++|++||| ++++|+||||
T Consensus 141 ~~~R~A~v~~~~~~~~~e~vVdL~~~~v~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw 219 (721)
T PRK14696 141 DQPRKADVIMLDGKHVIEAVVDLQNNKVLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPL 219 (721)
T ss_pred CCCcEEEEEEEeCCCEEEEEEECCCCEEEEEEeCCC-ccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCc
Confidence 378999999998888999999999999999999874 69999999999999999999999999999999 7899999999
Q ss_pred cccccCCC----CCeeEEEEEEEEecCCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCC----CCC
Q 006235 159 TVGWYGEH----VTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAK----TNP 230 (655)
Q Consensus 159 ~~G~~~~~----~~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~----~~~ 230 (655)
++|+++.. ++|||+||+||++++++|+||||||||+++||++++||++|+|++..+.|.. ..+|+++. ..+
T Consensus 220 ~~G~~~~~~~~~~~~Rl~~~~~y~~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~-~~~Y~~~~~~r~~lK 298 (721)
T PRK14696 220 TVGYFDGKDGLKQDARLLKVVSYLDVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMT-ARPYDGRDRVAPAVK 298 (721)
T ss_pred cccccCCcCccccCceEEEEEEEEcCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCC-CcCCCccccccCCCC
Confidence 99988754 2699999999999899999999999999999999999999999877555544 35888653 235
Q ss_pred CCccCCCCCceEEEeccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCccccccee
Q 006235 231 DSVICNVTKGGFTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFM 310 (655)
Q Consensus 231 p~~~~~peG~sf~v~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~ 310 (655)
|+.+.||||+||+|+|++|+||||+||+|||+|||||||||+|+| .|++|||+||+|||||+||||||+++|++|+||
T Consensus 299 Pl~i~QPeG~sF~v~G~~V~W~~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~f 376 (721)
T PRK14696 299 PLQIIEPEGKNYTITGDTIHWRNWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL 376 (721)
T ss_pred CceeeCCCCCCEEEcCCeEEECCcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceee
Confidence 788999999999999999999999999999999999999999998 567899999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEE
Q 006235 311 DLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVV 390 (655)
Q Consensus 311 D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVv 390 (655)
|+||||+|.+||+|+|||||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++.+ +.+++.| +|||
T Consensus 377 D~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~-~~~~r~r---~LVv 451 (721)
T PRK14696 377 DSGDYGMGTLTSPIARGKDAPSNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTERR---ELVV 451 (721)
T ss_pred eccccCCcccccccccCCCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCC-cceEeee---EEEE
Confidence 999999999999999999999999999999999999999999999999999 6799999999854 5555554 9999
Q ss_pred EEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeeccccC-CC--cccccccceeccCcccccceeeEEeeeecCCC
Q 006235 391 RMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNN-DQ--ITENVYGTLVAENAVAVNHDHFVTYYLDLDVD 467 (655)
Q Consensus 391 r~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~-~~--~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dId 467 (655)
|+|+|||||||+|+|+|||||+||++|+|||||+|+++.+..- +. ..+.+|||+|+|+++|++|||+||||||||||
T Consensus 452 r~i~TVgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dID 531 (721)
T PRK14696 452 RWISTVGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVD 531 (721)
T ss_pred EEEEEecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEccccc
Confidence 9999999999999999999999999999999999988643211 11 12358999999999999999999999999999
Q ss_pred CCCCceEEEEEEEeeccCCCCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCC--Cc
Q 006235 468 GNGNSFVKSKLKTARVSNVRASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQ--PV 544 (655)
Q Consensus 468 G~~Nsv~~~d~~~~~~~~g~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~--~~ 544 (655)
|.+|||+++|++++|+. ++||++++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|++ +.
T Consensus 532 G~~Nsv~~~d~~~~p~~--~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~ 607 (721)
T PRK14696 532 GENNSLVAMDPVVKPNT--AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTH 607 (721)
T ss_pred CCcceEEEEeeeEccCC--CCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCcc
Confidence 99999999999998873 5899999999999999999999999999 8886 9999999999999999999974 42
Q ss_pred c----cCCCCCChhhccccccccceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCC
Q 006235 545 T----SLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQ 620 (655)
Q Consensus 545 ~----~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ 620 (655)
. +++.|+|++.+||+||+||||||+|+|+|+||+|+|++|+.+++||++|+++||+|+|||||+|||||+||+||+
T Consensus 608 ~~~~~~~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ 687 (721)
T PRK14696 608 PVAKGANFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARA 687 (721)
T ss_pred ccccccccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCch
Confidence 2 368899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeeeeEEEeCCCCCCCCCCCCCCC
Q 006235 621 EDFPLMPTIHGGFELRPSNFFESNPLLLRQEN 652 (655)
Q Consensus 621 ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvP~~ 652 (655)
|||||||++++||+|||+||||+||+||+|+.
T Consensus 688 ED~PvMP~~~~~f~LkP~nFFd~nPaldvp~~ 719 (721)
T PRK14696 688 EEWPIMPTEWVHTLLKPWNFFDETPTLGLLKK 719 (721)
T ss_pred hhCCCccceeeeEEEEcCCCCCCCcccCCCCC
Confidence 99999999999999999999999999999986
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.2e-182 Score=1444.78 Aligned_cols=612 Identities=34% Similarity=0.596 Sum_probs=576.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEe--CCeeEEEE
Q 006235 22 LYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRA--GAETHELI 99 (655)
Q Consensus 22 ~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~--~~~~~E~v 99 (655)
.+|||||||++||++|.+|||+..... ++++|.+|+|.||+|++|++|...+. +++|.|++++|. +...+|++
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~~-~~~~F~~VtL~eP~K~~v~~f~~~~~----~ieR~a~~~~~~~~~~~i~Eav 102 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADFK-KNFAFTEVTLLEPDKQEVLAFRLENK----PIERKALAVVYELDGKGIYEAV 102 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhcccC-CceeeEEEEecCCchHHHHHHHhcCC----CcchhhhhheeeccCCceEEEE
Confidence 469999999999999999999987664 68899999999999999999976543 689999999987 68889999
Q ss_pred EeCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccCCC--CCeeEEEEEE
Q 006235 100 VDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYGEH--VTNRALKVVC 176 (655)
Q Consensus 100 V~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~~~--~~rRl~~~~~ 176 (655)
|||++.+|.+|+.++. ++|+|+.+||..+|.++++||+|+|||++||| |+++|+||||+.|+++++ .+||+++.+|
T Consensus 103 V~L~~nkv~~~q~i~~-a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~~~m 181 (654)
T COG3733 103 VDLDNNKVLSWQPIKD-AHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRALKVM 181 (654)
T ss_pred EEcccceeeeeEeccc-cCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEEEEE
Confidence 9999999999999985 69999999999999999999999999999999 899999999999998653 6899999999
Q ss_pred EEec-CCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCCC------CCCCccCCCCCceEEEeccEE
Q 006235 177 FYRG-GSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAKT------NPDSVICNVTKGGFTIEGHKV 249 (655)
Q Consensus 177 ~~r~-~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~------~~p~~~~~peG~sf~v~g~~V 249 (655)
|+|. .++|+|+|||+||.++||++++||++|+|++++|+|.+ ..+|..+.. -+|+.+.||||+||+|+|++|
T Consensus 182 ~yr~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~~~~~~~KpiqI~QPeg~sf~i~G~~i 260 (654)
T COG3733 182 WYRDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIGKALGPVKPIQIIQPEGKSFTITGDEI 260 (654)
T ss_pred EEEecCCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhhhhcCCCCCceeecCCCceEEEecCEE
Confidence 9995 88899999999999999999999999999999999985 456764321 257889999999999999999
Q ss_pred EeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCC
Q 006235 250 KWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVID 329 (655)
Q Consensus 250 ~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~D 329 (655)
+||+|+||+|||+|||||||||+|.| .|..|+|+||+||+||+||||||+++|++|++||+||||+|..+++|++| |
T Consensus 261 ~W~~w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plalG-d 337 (654)
T COG3733 261 SWQNWRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-D 337 (654)
T ss_pred EEeeeeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhhc-c
Confidence 99999999999999999999999999 67789999999999999999999999999999999999999999999999 9
Q ss_pred CCC-CcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEc
Q 006235 330 CPS-NAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFD 408 (655)
Q Consensus 330 Cpg-~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~ 408 (655)
|.| .|+|||+++.+.+|+|++++|||||||+| .|+||||+|+|++..+++|.| .||||+|+||+||||+|+|+||
T Consensus 338 c~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~Wifh 413 (654)
T COG3733 338 CAGSNIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYWIFH 413 (654)
T ss_pred cccceeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEEEEE
Confidence 998 89999999999999999999999999999 889999999999988777777 8999999999999999999999
Q ss_pred cCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCC
Q 006235 409 KSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRA 488 (655)
Q Consensus 409 ~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~ 488 (655)
|||+||++++||||++|+++.. .+. ...||++|.|++.|++||||||+||||||||.+|||+++|++..|. +..
T Consensus 414 qDGtIe~e~klTGIin~~a~~e---~~p-~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~--~~~ 487 (654)
T COG3733 414 QDGTIEFEAKLTGIINTKAIAE---GQP-DPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPI--TKG 487 (654)
T ss_pred cCceEEEeecceeEEEeehhcC---CCC-CCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCC--CCC
Confidence 9999999999999999986531 111 2349999999999999999999999999999999999999887777 458
Q ss_pred CCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccceEE
Q 006235 489 SPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWV 567 (655)
Q Consensus 489 np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwV 567 (655)
||+||+|+++++++++|++|.+++|+ +.|+|+|+|+||+|.+|+|+||||+|+.+..+++.++|.+.+|++||+|||||
T Consensus 488 np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~hlwV 567 (654)
T COG3733 488 NPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKHLWV 567 (654)
T ss_pred CCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccceEEE
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCCCCCCCCC
Q 006235 568 TAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLL 647 (655)
Q Consensus 568 T~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~l 647 (655)
|+|++.|+||+|+|+||+.+++||++|+++||||+|||||+|||||+||+||+||||+||++++||.|+|+||||+||+|
T Consensus 568 T~y~p~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~nPai 647 (654)
T COG3733 568 TPYHPGERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRNPAI 647 (654)
T ss_pred eccCcccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 006235 648 LRQENA 653 (655)
Q Consensus 648 dvP~~~ 653 (655)
++|++.
T Consensus 648 ~lp~~~ 653 (654)
T COG3733 648 DLPRKD 653 (654)
T ss_pred CCCccC
Confidence 999864
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.3e-159 Score=1304.04 Aligned_cols=624 Identities=52% Similarity=0.896 Sum_probs=578.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCC-CCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCCeeEEEEEe
Q 006235 23 YHPLDPLNPSEINQAKLIVQKSKLG-TLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVD 101 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~~~~~-~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~~~~E~vV~ 101 (655)
.|||||||+.||..++.+|+...+. ......|.+|.|.||.|+-+|.|+.++ ++++|+|+|++|...+++++|++||
T Consensus 27 ~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP--~~~pPpRRA~vVaR~gg~t~e~~vd 104 (670)
T KOG1186|consen 27 SHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGP--LPHPPPRRALVVERHGGPTPEARVD 104 (670)
T ss_pred CCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCC--CCCCCcceeEEEeecCCCceEEEEe
Confidence 7999999999999999999988753 335667899999999999999999843 2357899999998889999999999
Q ss_pred CCCCcEEEeeee-CCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCCCCCCeEEccccccccCCC--CCeeEEEEEEEE
Q 006235 102 LAIGSITSHNIY-KGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGLNLSEVSCLPFTVGWYGEH--VTNRALKVVCFY 178 (655)
Q Consensus 102 L~~~~v~~~~~~-~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~w~~G~~~~~--~~rRl~~~~~~~ 178 (655)
|+.+++++.... .+.+.|+++.+|+...++.+.+.+.|...+.+||+.++.+.|.+|+.|||++. +.||+++..||+
T Consensus 105 lst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g~~Rlik~~~f~ 184 (670)
T KOG1186|consen 105 LSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVGLERLIKHMAFY 184 (670)
T ss_pred cchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcchhhhhhhcccc
Confidence 999999998876 67789999999999999999999999999999999999999999999999875 348999999999
Q ss_pred ecCCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCCCC--CCCccCCCCCceEEEeccEEEeeceEE
Q 006235 179 RGGSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAKTN--PDSVICNVTKGGFTIEGHKVKWANWDF 256 (655)
Q Consensus 179 r~~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~--~p~~~~~peG~sf~v~g~~V~W~~W~f 256 (655)
++...|+|.+||+|+.++||+.+|||++|+|+..+|+|...+++|+.+... .|++..+|+||||+|+|+.|+|++|+|
T Consensus 185 ~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p~~~pLq~isPeGP~FrVeG~~V~w~nW~F 264 (670)
T KOG1186|consen 185 RAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLPGFKPLQPISPEGPGFRVEGHLVRWANWEF 264 (670)
T ss_pred cCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCCCCccccccCCCCCceEEEEEEEEeeccEE
Confidence 998899999999999999999999999999999889998888888754322 125555699999999999999999999
Q ss_pred EEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCcEE
Q 006235 257 HVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEY 336 (655)
Q Consensus 257 ~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~~Y 336 (655)
++||+.|+||||++|+|.|.+ .-|||+||+|+|||+||||||+++|++|+|||+||||+|..|++|++|||||+.|+|
T Consensus 265 h~~~~~r~Gl~is~v~~~d~~--~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L~~g~DCp~~a~y 342 (670)
T KOG1186|consen 265 HIGFDVRAGLVISDASFFDED--VYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSLAPGTDCPGNATY 342 (670)
T ss_pred EEccCCccceEEEEEEEcCCC--ceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCccccccccCCCCCCcceE
Confidence 999999999999999999954 479999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEEEE
Q 006235 337 LDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIG 416 (655)
Q Consensus 337 lD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe~~ 416 (655)
||+++...+|+|.+++||+||||+++|.|||||+++...+..++.+|++++||||+++|||||||||||+||+||.||++
T Consensus 343 ~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d~~F~~~G~ie~~ 422 (670)
T KOG1186|consen 343 MDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVDYEFKPSGVIEAG 422 (670)
T ss_pred EEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEEEEEecCCeEEEE
Confidence 99999999999999999999999998889999999776665678999999999999999999999999999999999999
Q ss_pred EEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCCCCcceeEE
Q 006235 417 VALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKSYWT 496 (655)
Q Consensus 417 v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~np~~~~~~ 496 (655)
|+|||||+++++.|... ...|||+|++++.|++|||+|+|||||||||++|++.-.+.+..+.++++.++++++|+
T Consensus 423 v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~~~~~~~~~~~~~ 498 (670)
T KOG1186|consen 423 VGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRTPPSVTPRKSYWT 498 (670)
T ss_pred EeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeeeEeecccCCCCCcccchhh
Confidence 99999999998866432 25799999999999999999999999999999555555566666666666788899999
Q ss_pred EEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccceEEeeeCCCcc
Q 006235 497 VVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSER 575 (655)
Q Consensus 497 ~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~ 575 (655)
+++++++||++|+.+++. +++.|.|+|+|++|++|+|+||||+|++++.+++++++.+++||+|++||||||+|+++|.
T Consensus 499 ~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y~l~VT~y~~~E~ 578 (670)
T KOG1186|consen 499 TKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNYNLWVTPYNESEV 578 (670)
T ss_pred hhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcceeEEeccCcccc
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCCCCCCCCCCCCCCCC
Q 006235 576 WAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLLLRQENAE 654 (655)
Q Consensus 576 ~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvP~~~~ 654 (655)
||||+|.+|++++++|+.|...|++|+|+|||+|||+||||||++||||+|||+..||.|||+|||++||+|++||+++
T Consensus 579 ~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~nP~l~~~p~~~ 657 (670)
T KOG1186|consen 579 WASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFERNPSLKSPPSKY 657 (670)
T ss_pred CcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeeccccccccCccccCCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=1.3e-141 Score=1153.76 Aligned_cols=410 Identities=39% Similarity=0.680 Sum_probs=366.2
Q ss_pred CCccCCCCCceEEEeccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCccccccee
Q 006235 231 DSVICNVTKGGFTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFM 310 (655)
Q Consensus 231 p~~~~~peG~sf~v~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~ 310 (655)
|+.+.||||+||+|+|++|+||+|+||++||+||||+||||+|+| ++++|+||+|||||+||||||+++|++|+||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~----~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~ 76 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG----ERRPILYRLSLQEMVVPYGDPDPPHHRKNAF 76 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT----EEEEEEEEEEEEEEEEEEE-SSTTHHH-EEE
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC----CCccEEEEEeeeeeeeecCCCCchhhccccc
Confidence 567889999999999999999999999999999999999999976 2225999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEE
Q 006235 311 DLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVV 390 (655)
Q Consensus 311 D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVv 390 (655)
|+||||+|.++++|++||||||+|+|||+++.+++|+|++++|||||||+|. ||||||++++++...++++| +|||
T Consensus 77 D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~-G~l~kH~~~~~~~~~~~r~~---~LVv 152 (413)
T PF01179_consen 77 DSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDA-GPLWKHTDYRTGRFEVRRSR---RLVV 152 (413)
T ss_dssp HHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEE-EEEEEEEETTSSEEEEEEEE---EEEE
T ss_pred cccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecC-Cchhhcccccccccceeecc---EEEE
Confidence 9999999999999999999999999999999999999999999999999995 59999999998766555555 9999
Q ss_pred EEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCC
Q 006235 391 RMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNG 470 (655)
Q Consensus 391 r~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~ 470 (655)
|+|+|||||||||||+|||||+||++|+|||||++... .. .+..+||++|+|+++|++|||+|||||||||||++
T Consensus 153 r~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~--~~---~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~ 227 (413)
T PF01179_consen 153 RTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY--AP---GEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTN 227 (413)
T ss_dssp EEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET--TT---TCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSE
T ss_pred EEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec--CC---CCccCCcceEcCCccccceeEEEEEEEccccCCCC
Confidence 99999999999999999999999999999999998753 21 12467999999999999999999999999999999
Q ss_pred CceEEEEEEEeeccC-CCCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCC
Q 006235 471 NSFVKSKLKTARVSN-VRASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLL 548 (655)
Q Consensus 471 Nsv~~~d~~~~~~~~-g~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~ 548 (655)
|||+++|+++++.+. ++.||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++.+++
T Consensus 228 Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~ 307 (413)
T PF01179_consen 228 NSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLA 307 (413)
T ss_dssp EEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SS
T ss_pred CeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccC
Confidence 999999999998743 35899999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCChhhccccccccceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccc
Q 006235 549 SDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPT 628 (655)
Q Consensus 549 ~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~ 628 (655)
+++|+..+||+||+|+||||||+|+|+||+|+|++|++++++|++|+++||+|+|||||+|+|+|+||+||+|||||||+
T Consensus 308 ~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~ 387 (413)
T PF01179_consen 308 PPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPV 387 (413)
T ss_dssp STTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEE
T ss_pred CCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEeCCCCCCCCCCCCCCCC
Q 006235 629 IHGGFELRPSNFFESNPLLLRQENA 653 (655)
Q Consensus 629 ~~~~f~L~P~nFFd~nP~ldvP~~~ 653 (655)
+++||+|||+|||++||+||+|++.
T Consensus 388 ~~~gf~L~P~nFF~~nPald~p~~~ 412 (413)
T PF01179_consen 388 EWLGFMLKPFNFFDRNPALDVPPSV 412 (413)
T ss_dssp EEEEEEEEEESSSSSSTTTTCTTC-
T ss_pred cEEEEEEEcCCCCCCCccccCCCCC
Confidence 9999999999999999999999975
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.89 E-value=6.6e-24 Score=190.12 Aligned_cols=98 Identities=38% Similarity=0.747 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccCCCC-CeeEEEEEEEEecCCCCccccCCCCeEEE
Q 006235 119 PPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYGEHV-TNRALKVVCFYRGGSPNIFARPIEGISML 196 (655)
Q Consensus 119 p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~~~~-~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~ 196 (655)
|+++.+|+.+++++++++|.|+++|++||| +++.|+|+||++|++|.++ ++|++|++||+|...+|+|||||+||+++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~~~ 80 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLEPL 80 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceEEE
Confidence 689999999999999999999999999999 6899999999999988765 99999999999986559999999999999
Q ss_pred EecCCceEEEEeCCc-cccCC
Q 006235 197 VDVDKMQIIKYTDRL-RLPLP 216 (655)
Q Consensus 197 vD~~~~~vv~i~d~~-~~~~p 216 (655)
||++++||++|+|++ .+|.|
T Consensus 81 vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 81 VDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EETTTTEEEEEEEEEEEETT-
T ss_pred EECCCCEEEEEEeCCceeeCC
Confidence 999999999999988 46654
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.76 E-value=1.8e-19 Score=157.12 Aligned_cols=85 Identities=34% Similarity=0.519 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCCeeEEEEEeCC
Q 006235 24 HPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVDLA 103 (655)
Q Consensus 24 HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~~~~E~vV~L~ 103 (655)
|||||||++||++|+++|+++......+++|.+|+|.||+|++|++| +.++ ++|+|+|+|+++++++.+|++|||+
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~-~~~~---~~p~R~A~vv~~~~~~~~e~vVdl~ 76 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAF-ERGG---PPPPRRARVVVYDGGQSYEAVVDLT 76 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHH-HCCT---TTS-EEEEEEEEETSSSSEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhcc-ccCC---cCCCeEEEEEEEECCeeeeEEEECc
Confidence 99999999999999999999883333578999999999999999999 4333 4589999999999877799999999
Q ss_pred CCcEEEeee
Q 006235 104 IGSITSHNI 112 (655)
Q Consensus 104 ~~~v~~~~~ 112 (655)
.++|++|+.
T Consensus 77 ~~~V~~~~~ 85 (86)
T PF02727_consen 77 SGKVVSWKE 85 (86)
T ss_dssp EEECSCEEE
T ss_pred CCccccCcc
Confidence 999998875
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=44.44 E-value=12 Score=30.21 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 006235 25 PLDPLNPSEINQAKLIVQK 43 (655)
Q Consensus 25 PldpLs~~Ei~~a~~~l~~ 43 (655)
|..+||+.|+++|.++|.+
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7789999999999999875
No 10
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=39.84 E-value=7.7 Score=34.78 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeC--C-e------e-EE
Q 006235 28 PLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAG--A-E------T-HE 97 (655)
Q Consensus 28 pLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~--~-~------~-~E 97 (655)
|+|.+|+.++.+++++..... . ......|.++.+-.+..|-.+..+....-.|.+.+.+|.. + . . .+
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~--~-al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~ 78 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQ--A-ALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLE 78 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHH--H-HHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEE
T ss_pred CcCHHHHHHHHHHHHHCHHHH--H-HHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceE
Confidence 689999999999999653210 0 0000012223333333443222110011458888887762 2 1 1 48
Q ss_pred EEEeCCCCcEEEeee
Q 006235 98 LIVDLAIGSITSHNI 112 (655)
Q Consensus 98 ~vV~L~~~~v~~~~~ 112 (655)
++||+.+.+|.++..
T Consensus 79 ~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 79 PLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEEe
Confidence 899999999998865
No 11
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=29.55 E-value=79 Score=26.37 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhccC
Q 006235 21 SLYHPLDPLNPSEINQAKLIVQKSKL 46 (655)
Q Consensus 21 ~~~HPldpLs~~Ei~~a~~~l~~~~~ 46 (655)
++.+|-++||.+|+++|.+.|.+...
T Consensus 18 ~i~~pk~~lt~~~V~~~m~~ii~~~v 43 (69)
T PF11148_consen 18 SIPNPKEDLTEAEVKAAMQAIIAKKV 43 (69)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 45899999999999999999988754
Done!