Query 006235
Match_columns 655
No_of_seqs 152 out of 715
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksi_A Copper amine oxidase; P 100.0 2E-187 6E-192 1576.9 70.5 630 22-655 1-637 (642)
2 3sxx_A Peroxisomal primary ami 100.0 5E-186 2E-190 1563.9 66.9 614 23-653 22-661 (692)
3 3loy_A Copper amine oxidase; T 100.0 3E-184 9E-189 1541.8 66.2 610 23-653 1-633 (633)
4 1w6g_A Phenylethylamine oxidas 100.0 4E-180 1E-184 1514.2 62.6 605 21-653 5-627 (646)
5 1spu_A Copper amine oxidase; o 100.0 9E-177 3E-181 1511.4 67.7 619 19-653 89-726 (727)
6 1tu5_A Copper amine oxidase, l 100.0 4E-161 2E-165 1374.5 55.2 603 22-652 39-705 (746)
7 1w7c_A Lysyl oxidase; AMNE oxi 100.0 1E-159 4E-164 1361.1 57.9 599 20-652 15-692 (747)
8 3hi7_A Amiloride-sensitive ami 100.0 1E-151 3E-156 1291.7 59.4 605 23-653 10-694 (731)
9 3pgb_A Putative uncharacterize 100.0 2E-148 5E-153 1266.8 59.6 600 23-652 65-736 (797)
10 2cs7_A Pneumococcal histidine 21.0 35 0.0012 26.7 1.3 18 25-42 37-54 (55)
11 2d0s_A Cytochrome C, cytochrom 20.8 57 0.0019 25.5 2.7 21 23-43 57-77 (79)
12 1cc5_A Cytochrome C5; electron 20.1 61 0.0021 26.2 2.8 20 24-43 60-82 (83)
No 1
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=1.9e-187 Score=1576.87 Aligned_cols=630 Identities=50% Similarity=0.910 Sum_probs=588.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCCeeEEEEEe
Q 006235 22 LYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHELIVD 101 (655)
Q Consensus 22 ~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~~~~E~vV~ 101 (655)
++|||||||++||++|++||+++.+.++..++|++|+|.||+|++|++||+..+ .++|+|+|+|+++.+++++|++|+
T Consensus 1 ~~HPldpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~l~~~~--~~~P~R~A~vv~~~~~~~~E~vV~ 78 (642)
T 1ksi_A 1 VQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPT--LVSIPRKIFVVAIINSQTHEILIN 78 (642)
T ss_dssp CCSTTCCCCHHHHHHHHHHHHHHSCTTTCCEEEEEEEECCCCHHHHHHHHHCGG--GCCCCCEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCHHHHHHHHhhcC--CCCCCcEEEEEEEeCCeEEEEEEE
Confidence 479999999999999999999987654467899999999999999999995432 257899999999999999999999
Q ss_pred CCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCCCCCCeEEccccccccCCCCCeeEEEEEEEEecC
Q 006235 102 LAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGLNLSEVSCLPFTVGWYGEHVTNRALKVVCFYRGG 181 (655)
Q Consensus 102 L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~w~~G~~~~~~~rRl~~~~~~~r~~ 181 (655)
|+.+++++++..+..+||+++.+|+.++++++++||.|+|+|+++||++.+|.||||++|+++..++||++|++||++.+
T Consensus 79 L~~~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~~~~v~~~pw~~g~~~~~~~~Rl~~~~~~~~~~ 158 (642)
T 1ksi_A 79 LRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKES 158 (642)
T ss_dssp TTTTEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCCGGGEEEEEECCCCCSCSCCCCEEEEEEEECSS
T ss_pred CCCCcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCCccceEEecccccCCCCCCCcEEEEEEEEEecC
Confidence 99999998776666569999999999999999999999999999999988999999999988876679999999999988
Q ss_pred CCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCCC-------CCCCccCCCCCceEEEeccEEEeece
Q 006235 182 SPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAKT-------NPDSVICNVTKGGFTIEGHKVKWANW 254 (655)
Q Consensus 182 ~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~-------~~p~~~~~peG~sf~v~g~~V~W~~W 254 (655)
++|+|+||||||+++||++++||++|+|.+.+++|..++.+|++... .+|+.+.||||+||+|+|++|+||||
T Consensus 159 ~~n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~QPeG~sF~V~G~~V~W~~W 238 (642)
T 1ksi_A 159 TVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANW 238 (642)
T ss_dssp CSCGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTTCCCCSTTCCSCCCCCCCCBEEECTTCCSCEEETTEEEETTE
T ss_pred CCcccccccCceEEEEECCCCEEEEEEccCCccCCCCCCCCccccccCCCCCCCCCCceecCCCCCCEEEeCcEEeeCCc
Confidence 89999999999999999999999999988777777766677886532 23567789999999999999999999
Q ss_pred EEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCc
Q 006235 255 DFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNA 334 (655)
Q Consensus 255 ~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~ 334 (655)
+||||||+|||||||||+|+|.+.|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+|
T Consensus 239 ~f~vgf~~reGlvL~dv~y~d~~~g~~r~V~YrlSl~Em~VPYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i 318 (642)
T 1ksi_A 239 KFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHA 318 (642)
T ss_dssp EEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTC
T ss_pred eEEEecCCCcccEEEEEEEecCCCCCceEEEEEeeeeeEEEeCCCCCcccccceeeeccccCccccccccccCCCCCCCC
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEE
Q 006235 335 EYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIK 414 (655)
Q Consensus 335 ~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe 414 (655)
+|||+++.+++|+|++++|||||||+| +||||||+|+++++..++.+|++++||||+|+|||||||||||+|||||+||
T Consensus 319 ~Y~D~~~~~~~G~p~~~~naiCihE~d-~gilwkH~~~r~~~~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie 397 (642)
T 1ksi_A 319 QFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIK 397 (642)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEE-EEEEEEEEECCSTTCCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEE
T ss_pred EEeeeEEecCCCCEEEcCCEEEEEecc-CCcceeeccccCCCceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEE
Confidence 999999999999999999999999999 9999999999988644455666779999999999999999999999999999
Q ss_pred EEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCCCCccee
Q 006235 415 IGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKSY 494 (655)
Q Consensus 415 ~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~np~~~~ 494 (655)
+||+|||||+|+++.+.+.++.++.+|||+|+|+++|++|||+|||||||||||++|||+++|+++++++. ++||++++
T Consensus 398 ~ev~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~-~~np~~~~ 476 (642)
T 1ksi_A 398 PSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKD-GSSKRKSY 476 (642)
T ss_dssp EEEEEEECCCEEECSCCSGGGCCSCCSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEEECCS-SCSSCSEE
T ss_pred EEEEEEEEEEecccccccccccccCCCcceecCCcccccceEEEEEeeccCCCCCCCeEEEEeeEecCCCC-CCCCCcce
Confidence 99999999999988764433223468999999999999999999999999999999999999999999864 48999999
Q ss_pred EEEEEEEecChHHHhHhcCCCCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccceEEeeeCCCc
Q 006235 495 WTVVKETAKTEAEARIRLGVEPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSE 574 (655)
Q Consensus 495 ~~~~~t~~~tE~~a~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E 574 (655)
|++++++++||++|+++++..+|+|+|+|++++|++|+|+||||+|++++++|++++|+.++||+||+|+||||||+|+|
T Consensus 477 ~~~~~t~~~tE~ea~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E 556 (642)
T 1ksi_A 477 WTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTE 556 (642)
T ss_dssp EEEEEEECCBGGGGCBCTTSSCEEEEEEEEEEECTTSCEEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTC
T ss_pred EEEEEEEccchhhhhhccCCCceEEEEEcCCCcCCCCCeeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCCCCCCCCCCCCCCCC
Q 006235 575 RWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFESNPLLLRQENAE 654 (655)
Q Consensus 575 ~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ldvP~~~~ 654 (655)
+||+|+|++|+++++|+.+|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||++||+||+|++.+
T Consensus 557 ~~a~g~y~~qs~~~~gl~~~~~~~~~i~~~DiV~W~t~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~ 636 (642)
T 1ksi_A 557 KWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRD 636 (642)
T ss_dssp CCTTCSCCBTCCSSSSHHHHGGGCCBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCB
T ss_pred cCCCCCCccCCCCCCChhhhhhCCCccccCCcEEEEecccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCcc
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 006235 655 K 655 (655)
Q Consensus 655 ~ 655 (655)
|
T Consensus 637 ~ 637 (642)
T 1ksi_A 637 V 637 (642)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=4.6e-186 Score=1563.87 Aligned_cols=614 Identities=26% Similarity=0.437 Sum_probs=573.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEe--CCeeEEEEE
Q 006235 23 YHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRA--GAETHELIV 100 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~--~~~~~E~vV 100 (655)
+|||||||++||++|++||+++.+. ..++|++|+|.||+|++|++|+++.. ++|+|+|+|+++. +++++|++|
T Consensus 22 ~HPLDpLs~~Ei~~a~~iv~~~~~~--~~~~F~~i~L~EP~K~~v~~~~~~~~---~~p~R~a~v~~~~~~~~~~~e~vV 96 (692)
T 3sxx_A 22 AHPLDPLSTAEIKAATNTVKSYFAG--KKISFNTVTLREPARKAYIQWKEQGG---PLPPRLAYYVILEAGKPGVKEGLV 96 (692)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHHTTT--SCEEEEEEEEECCCHHHHHHHHHSCC---CCCCCEEEEEEEETTCSSEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCC--CCcEEEEEECCCCCHHHHHHHHhcCC---CCCCeEEEEEEEECCCCCEEEEEE
Confidence 7999999999999999999987653 57899999999999999999998733 5789999999998 688999999
Q ss_pred eCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC---CCCCeEEccccccccCCC-CCeeEEEEEE
Q 006235 101 DLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL---NLSEVSCLPFTVGWYGEH-VTNRALKVVC 176 (655)
Q Consensus 101 ~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~---~~~~v~~d~w~~G~~~~~-~~rRl~~~~~ 176 (655)
||+.++|++|+.+++ +||+++.||+.+||++|++||.|+++|++||| ++++|+||||++|+++.. .+|||+||+|
T Consensus 97 dl~~~~v~~~~~~~~-~~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~~~~~Rl~~~~~ 175 (692)
T 3sxx_A 97 DLASLSVIETRALET-VQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 175 (692)
T ss_dssp ETTTTEEEEEEEETT-CCCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTTTTSSCEEEEEE
T ss_pred ECCCCeEEEEEECCC-CcCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCCCCCceEEEEEE
Confidence 999999999999986 68999999999999999999999999999999 456799999999988764 5899999999
Q ss_pred EEec-CCCCccccCCCCeEEEEecCCceEEEEeCCcc-ccCCCCCCCCCCCCC----------CCCCCccCCCCCceEEE
Q 006235 177 FYRG-GSPNIFARPIEGISMLVDVDKMQIIKYTDRLR-LPLPRAEGTDYTSAK----------TNPDSVICNVTKGGFTI 244 (655)
Q Consensus 177 ~~r~-~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~-~~~p~~~~~~y~~~~----------~~~p~~~~~peG~sf~v 244 (655)
|+|. +++|+|||||| |+++||++++|||+|++... .|+|+.+..+|++++ ..+|+.+.||||+||+|
T Consensus 176 y~r~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~r~~d~kP~~i~QPeG~sF~v 254 (692)
T 3sxx_A 176 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 254 (692)
T ss_dssp EECSSTTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSSCCCCCCCCEEECTTCCSCEE
T ss_pred EEecCCCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCCCCCCCCCceecCCCCCcEEE
Confidence 9997 58899999999 99999999999999998765 566666678897531 23467788999999999
Q ss_pred eccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCC
Q 006235 245 EGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSL 324 (655)
Q Consensus 245 ~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L 324 (655)
+||+|+||||+||||||+|||||||||+|+| +|+.|||+||+|||||+||||||++||++|+|||+||||+|.+||+|
T Consensus 255 ~g~~V~W~~W~F~vgf~~reGlvL~dV~y~~--~g~~R~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L 332 (692)
T 3sxx_A 255 TGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPL 332 (692)
T ss_dssp ETTEEEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCC
T ss_pred cCCeEEecCcEEEEecCCCCceEEEEEEEcC--CCcceeeeeeeehheeEEecCCCCchhhhheeeeccccCCCcccccc
Confidence 9999999999999999999999999999998 67889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCC--CeeEeecccceEEEEEEEEEeecceeE
Q 006235 325 QPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVP--GKVIRSGEPEVSLVVRMVTTVGNYDYV 402 (655)
Q Consensus 325 ~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~--~~~~~~~r~~~~LVvr~i~TV~NYDYi 402 (655)
++||||||+|+|||+++.+++|+|++++|||||||+| .|+||||+|++++ ..+++|+| +||||+|+||||||||
T Consensus 333 ~lGcDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~d-~Gil~kHt~~r~~~~~~~v~r~r---~LVvr~i~TVgNYDYi 408 (692)
T 3sxx_A 333 SLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEED-DGLLFKHSDFRDNFATSLVTRAT---KLVVSQIFTAANYEYC 408 (692)
T ss_dssp TTTTTSCSSCEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEEECGGGTTCSEEEEEEE---EEEEEEEEEETTEEEE
T ss_pred ccCCCCCCCcEEeeeEEecCCCCEEEecceEEEeecc-CCceEEeeeccCCCceeeEEecc---EEEEEEeeeccceeEE
Confidence 9999999999999999999999999999999999999 5699999999877 66666666 9999999999999999
Q ss_pred EEEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEee
Q 006235 403 LDWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTAR 482 (655)
Q Consensus 403 ~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~ 482 (655)
|+|+|||||+||+||||||||+|.++. .++ .+.+|||+|+|+++|++|||+|||||||||||.+|||+++|+++++
T Consensus 409 f~w~F~qdG~Ie~ev~aTGil~t~~~~---~~~-~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~ 484 (692)
T 3sxx_A 409 LYWVFMQDGAIRLDIRLTGILNTYILG---DDE-EAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSP 484 (692)
T ss_dssp EEEEECTTSCEEEEEEEEECCCCEECC---TTC-CCTTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECS
T ss_pred EEEEEecCCeEEEEEEEEEEEEeeeeC---CCc-ccCCCcceecCCccccceeEEEEEEeccccCCCCceEEEEEeEEcc
Confidence 999999999999999999999987652 111 1468999999999999999999999999999999999999999999
Q ss_pred ccCC-CCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCC-CCceeEEEeeCCCcccCCCCCChhhcccc
Q 006235 483 VSNV-RASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKL-GNHVGYRLITGQPVTSLLSDDDYPQIRAS 559 (655)
Q Consensus 483 ~~~g-~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~ 559 (655)
++.| +.||++++|++++++++||++|++++++ ++|+|+|+|++++|++ |+|+||||+|++++++|++++|+.++||+
T Consensus 485 ~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~ 564 (692)
T 3sxx_A 485 YPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAP 564 (692)
T ss_dssp SCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTTTCSCCEEEEECCCCCCCCSCTTSHHHHHCG
T ss_pred CCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCccceEEEecCCCCcccCCCCchhhhhch
Confidence 8654 4899999999999999999999999999 9999999999999999 99999999999999999999999999999
Q ss_pred ccccceEEeeeCCCcccCCCcCccCCCCC--CChhccc-cCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEE
Q 006235 560 YTKYQVWVTAYNKSERWAGGFYTDQSRGD--DGLAVWS-SRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELR 636 (655)
Q Consensus 560 fa~~~lwVT~y~~~E~~asg~y~~q~~~~--~~l~~~~-~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~ 636 (655)
||+|+||||||+|+|+||+|+|+||+.++ +||++|+ ++||+|+|||||+|||||+||+||+|||||||++++||+||
T Consensus 565 fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~gf~Lr 644 (692)
T 3sxx_A 565 WASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLR 644 (692)
T ss_dssp GGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEEEEEE
T ss_pred hcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCceEEEEecCcccCCchhcCCCCcceEEEEEEE
Confidence 99999999999999999999999999987 6999999 89999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCC
Q 006235 637 PSNFFESNPLLLRQENA 653 (655)
Q Consensus 637 P~nFFd~nP~ldvP~~~ 653 (655)
|+|||++||+||+|++.
T Consensus 645 P~nFFd~NPaldvp~~~ 661 (692)
T 3sxx_A 645 PRHFFTENPGLDIQPSY 661 (692)
T ss_dssp EESSSSSCTTTTSCCSE
T ss_pred CCCcCCCCCcccCCCcc
Confidence 99999999999999973
No 3
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=2.5e-184 Score=1541.77 Aligned_cols=610 Identities=25% Similarity=0.446 Sum_probs=564.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCC--CCCCCceeEEEEEeCCeeEEEEE
Q 006235 23 YHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRG--KLNLHRQAKVVLRAGAETHELIV 100 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~--~~~p~R~A~vv~~~~~~~~E~vV 100 (655)
.|||||||++||++|++||+++... ..+++|++|+|.||+|++|++||++++.+ .++|+|+|+|+++.+++++|++|
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~-~~~~~F~~i~L~EP~K~~v~~~l~~~~~g~~~~~p~R~a~v~~~~~~~~~e~vV 79 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG-PERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPHISRMTYVYYYIGLDFYKALV 79 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS-SSCEEEEEEEECCCCHHHHHHHHHHHHHTCCCCCCCCEEEEEEEETTEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC-CCCcEEEEEECCCCCHHHHHHHHhhhhcCCCCCCCCcEEEEEEEeCCCEEEEEE
Confidence 4999999999999999999987653 25789999999999999999999865432 25778999998877889999999
Q ss_pred eCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccCCCCCeeEEEEEEEEe
Q 006235 101 DLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYGEHVTNRALKVVCFYR 179 (655)
Q Consensus 101 ~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~~~~~rRl~~~~~~~r 179 (655)
||++++|++|+.+++.+||+++.||+.+||++|++||.|+++|++||| +++.|+||||++|+++ +++|||+||+||+|
T Consensus 80 dl~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~~~V~~dpw~~G~d~-~~~~Rl~q~~~y~r 158 (633)
T 3loy_A 80 NVSYGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDS-KEDRMLIQCYMYLA 158 (633)
T ss_dssp ETTTTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTTEEEEEEEEECCCSS-CCCSCEEEEEEEEE
T ss_pred ECCCCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCceEEEeccccccCC-CCCcEEEEEEEEEe
Confidence 999999999999998789999999999999999999999999999999 6689999999999766 57899999999999
Q ss_pred c---CCCCccccCCCCeEEEEecCCceEEEEeCC--cc----c---cCCCCCCCCCCCCCC------CCCCccCCCCCce
Q 006235 180 G---GSPNIFARPIEGISMLVDVDKMQIIKYTDR--LR----L---PLPRAEGTDYTSAKT------NPDSVICNVTKGG 241 (655)
Q Consensus 180 ~---~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~--~~----~---~~p~~~~~~y~~~~~------~~p~~~~~peG~s 241 (655)
. +++|+|||||+ |+++||++++|||+|++. +. . |.++.+..+|+++++ .+|+.+.||||+|
T Consensus 159 ~~~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~~~~~~~~Y~p~~~~~~r~d~kp~~i~QPeG~s 237 (633)
T 3loy_A 159 SAAHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGETIVPLKPLIVQQPEGPS 237 (633)
T ss_dssp ETTCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCCCCCCCCCCSTTTSCCCCCCCCCCEEECTTCCS
T ss_pred cCCCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCCCCCCCCCcChhHcccccCCCCCcceeCCCCCC
Confidence 4 68899999999 889999999999999974 11 1 233445678987532 2467788999999
Q ss_pred EEEeccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccc
Q 006235 242 FTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAA 321 (655)
Q Consensus 242 f~v~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a 321 (655)
|+|+|++|+||||+||||||+|||||||||+|+| |||+||+|||||+||||||++||++|+|||+||||+|.+|
T Consensus 238 F~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~g------r~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a 311 (633)
T 3loy_A 238 FNVDGHKISWQGWEFFVIPTVREGFAIYDIHFKG------RSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATG 311 (633)
T ss_dssp EEEETTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTB
T ss_pred EEEcCCccccCCcEEEEecCCCcCcEEEeeEECC------EEEEEEEEeeeEEEeCCCCCChhhhheeecccccCccccc
Confidence 9999999999999999999999999999999953 8999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeeccee
Q 006235 322 GSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDY 401 (655)
Q Consensus 322 ~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDY 401 (655)
|+|++||||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++++.+.++|+| +||||+|+|||||||
T Consensus 312 ~~L~~GcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d-~Gi~~kHt~~r~~~~~v~r~r---~LVvr~i~TVgNYdY 387 (633)
T 3loy_A 312 NSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLHEQD-GGLLYKHTNYRTNVPVIARRR---EFVVQTIATVANAEY 387 (633)
T ss_dssp CCSTTTTCSCSSEEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEEECTTTCCEEEEEEE---EEEEEEEEEETTEEE
T ss_pred cCCccCCCCCCCcEEeeeEEecCCCCEEEecceEEEEecc-CCceeeeccccCCceeEEEee---EEEEEEEeeccceeE
Confidence 9999999999999999999999999999999999999999 679999999999888777777 999999999999999
Q ss_pred EEEEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEe
Q 006235 402 VLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTA 481 (655)
Q Consensus 402 i~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 481 (655)
||+|+|||||+||+||+|||||++.+.. ++++.+|||+|+|+++|++|||+|||||||||||++|||+++|++++
T Consensus 388 if~w~F~~dG~Ie~ev~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~ 462 (633)
T 3loy_A 388 MLNIIFDQAGEIRIHVRATGILSTMPLD-----KDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIRM 462 (633)
T ss_dssp EEEEEEETTSCEEEEEEEEECCCCEECC-----TTCCCTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEC
T ss_pred EEEEEEecCCeEEEEEEEEEEEeeeecC-----CcccCCCcceecCCccccceeEEEEEEecccccCCCCEEEEEeeeec
Confidence 9999999999999999999999987641 12357899999999999999999999999999999999999999998
Q ss_pred eccCCCCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCC-CCceeEEEeeCCCcccCCCCCChhhcccc
Q 006235 482 RVSNVRASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKL-GNHVGYRLITGQPVTSLLSDDDYPQIRAS 559 (655)
Q Consensus 482 ~~~~g~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~-G~p~gYkl~p~~~~~~l~~~~s~~~~ra~ 559 (655)
+... ..||++++|+++++++++| |++++++ ++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+.++||+
T Consensus 463 ~~~~-~~nP~g~~~~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G~p~gYkl~p~~~~~ll~~~~s~~~~Ra~ 539 (633)
T 3loy_A 463 EKNT-KLNPYNVGFVTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQ 539 (633)
T ss_dssp CSSS-SSSTTSCCEEEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTCSEEEEEEECCCCCCCCSCSSSHHHHHCG
T ss_pred CCCC-CCCCCCcceEEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCCccceEEEccCCCCcccCCCCchhhhccc
Confidence 8743 3899999999999999876 6799999 9999999999999996 99999999999999999999999999999
Q ss_pred ccccceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCC
Q 006235 560 YTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSN 639 (655)
Q Consensus 560 fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~n 639 (655)
||+|+||||||+|+|+||||+|+||+.+++||++|+++||+|+|||||+|+|||+||+||+|||||||++++||+|||+|
T Consensus 540 fa~~~lwVT~y~d~E~~aag~y~nQs~~~~gl~~w~~~~e~i~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~n 619 (633)
T 3loy_A 540 FATQQVWVTKYRDNELYAAGEFTNQSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFG 619 (633)
T ss_dssp GGGSSEEEEECCTTCCCTTCSCCTTCSSCCSHHHHTTCCCCCTTBCEEEEEEEEEEECCCGGGCSSEEEEEEEEEEEEES
T ss_pred hhhcceEEecCCCCccccCCCCccCCCCCCChHHHhcCCCccccCceEEEEecCcccCCCcccCCCCccceeeEEEEcCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 006235 640 FFESNPLLLRQENA 653 (655)
Q Consensus 640 FFd~nP~ldvP~~~ 653 (655)
||++||+||||+|.
T Consensus 620 FFd~nP~ldvp~s~ 633 (633)
T 3loy_A 620 FFDKNPALSVPQST 633 (633)
T ss_dssp SSSSCGGGGSCCCC
T ss_pred cCCCCccccCCCCC
Confidence 99999999999974
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=4.1e-180 Score=1514.22 Aligned_cols=605 Identities=25% Similarity=0.441 Sum_probs=562.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEe--CCeeEEE
Q 006235 21 SLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRA--GAETHEL 98 (655)
Q Consensus 21 ~~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~--~~~~~E~ 98 (655)
..+|||||||++||++|++||+++.... .+++|++|+|.||+|++ +. ++|+|+|+|++++ ++.++|+
T Consensus 5 ~~~HPldpLs~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~eP~K~~-------g~---~~P~R~A~vv~~~~~~~~~~E~ 73 (646)
T 1w6g_A 5 QTASPFRLASAGEISEVQGILRTAGLLG-PEKRIAYLGVLDPARGA-------GS---EAEDRRFRVFIHDVSGARPQEV 73 (646)
T ss_dssp --CCTTCCCCHHHHHHHHHHHHHTTCCC-TTEEEEEEEECCCCSCC-------SS---SCCCCEEEEEEEETTSCCCEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcccCC-CCcEEEEEEccCCchhh-------CC---CCCCeEEEEEEEECCCCcEEEE
Confidence 3479999999999999999999987643 57899999999999998 22 5789999999988 5789999
Q ss_pred EEeCCCCcEEE---eeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccCCC--CCeeEE
Q 006235 99 IVDLAIGSITS---HNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYGEH--VTNRAL 172 (655)
Q Consensus 99 vV~L~~~~v~~---~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~~~--~~rRl~ 172 (655)
+|+|+.++|++ ++.+++ +||+++.+|+.++|++++++|.|+++|+++|| +++.|+| ||++||+++. .+||++
T Consensus 74 vV~L~~~~v~~~~~~~~~~~-~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl~~~~~v~~-pw~~g~~~~~~~~~~Rl~ 151 (646)
T 1w6g_A 74 TVSVTNGTVISAVELDTAAT-GELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVA-PLSAGVFEYAEERGRRIL 151 (646)
T ss_dssp EEETTTTEEEEEEECCHHHH-CBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTCCGGGEEEE-EEECCCCSCGGGTTSCEE
T ss_pred EEECCCCeEEecccceeCCC-ccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCeeEE-eecccccCCccCCCcEEE
Confidence 99999999998 788884 69999999999999999999999999999999 4677999 9999977653 479999
Q ss_pred EEEEEEec-CCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCC-------CCCCCccCCCCCceEEE
Q 006235 173 KVVCFYRG-GSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAK-------TNPDSVICNVTKGGFTI 244 (655)
Q Consensus 173 ~~~~~~r~-~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~-------~~~p~~~~~peG~sf~v 244 (655)
|++||+|. +++|+|+|||+||+++||++++||++|++.+.++.|. +..+|.++. ..+|+.+.||||+||+|
T Consensus 152 ~~~~~~r~~~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~-~~~~y~~~~~~~~~r~~lkP~~i~QPeGpsF~V 230 (646)
T 1w6g_A 152 RGLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFTV 230 (646)
T ss_dssp EEEEEECSSTTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC-SCCCTTCHHHHCSCCCCCCCCCCCCTTCCSCEE
T ss_pred EEEEEEecCCCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC-CCCccchhhcCCCcCCCCCCceecCCCCCceEE
Confidence 99999997 5789999999999999999999999999987666664 456887532 12467788999999999
Q ss_pred e-ccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccC
Q 006235 245 E-GHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGS 323 (655)
Q Consensus 245 ~-g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~ 323 (655)
+ |++|+||||+||||||+|||||||||+|+| .|+.|||+||+|||||+||||||+++|++|+|||+||||+|.+||+
T Consensus 231 ~~G~~V~W~~W~F~vgfn~ReGlvL~dV~y~~--~g~~R~V~YrlSlsEm~VPYgdp~p~~~~k~afD~GeyG~G~~an~ 308 (646)
T 1w6g_A 231 TGGNHIEWEKWSLDVGFDVREGVVLHNIAFRD--GDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANS 308 (646)
T ss_dssp ETTTEEEETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCCTTTTTCEEECCCCCCGGGGBCC
T ss_pred eCCCEEEeCCCEEEEecCCCcceEEEEEEEcC--CCCceEEEEEeeeeEEEEeCCCCCchhhcceeeeccCcCCcccccc
Confidence 9 999999999999999999999999999998 5678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEE
Q 006235 324 LQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVL 403 (655)
Q Consensus 324 L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~ 403 (655)
|++||||||+|+|||+++.+++|+|++++|||||||+| .||||||+|++++.++++++| +||||+|+|||||||||
T Consensus 309 L~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~d-~GilwkH~~~r~~~~~v~r~r---~LVvr~i~Tv~NYdYi~ 384 (646)
T 1w6g_A 309 LELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEED-WGILAKHSDLWSGINYTRRNR---RMVISFFTTIGNADYGF 384 (646)
T ss_dssp CCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEE-EEEEEEEECTTTCCEEEEEEE---EEEEEEEEEETTEEEEE
T ss_pred cccCCCCCCCCEEEeEEEEcCCCCEEEcCCEEEEeecc-CCcceeeecccCCceeeeccc---EEEEEEEeeccccceEE
Confidence 99999999999999999999999999999999999999 559999999999866666665 99999999999999999
Q ss_pred EEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeec
Q 006235 404 DWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARV 483 (655)
Q Consensus 404 ~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~ 483 (655)
+|+|||||+||++|+|||||+|+++.. ++.+|||+|+|+++|++|||+|||||||||||++|||+++|+++++.
T Consensus 385 ~w~F~~dG~Ie~ev~aTGil~t~~~~~------~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~ 458 (646)
T 1w6g_A 385 YWYLYLDGTIEFEAKATGVVFTSAFPE------GGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTM 458 (646)
T ss_dssp EEEEETTSCEEEEEEEEECCCCEECCT------TCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECCS
T ss_pred EEEEecCCeEEEEEEEEEEEeeeecCC------ccCCCcceecCCcccccceEEEEEeecccccCCCCEEEEEeeEeccC
Confidence 999999999999999999999877532 24689999999999999999999999999999999999999999987
Q ss_pred cCCCCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccc
Q 006235 484 SNVRASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTK 562 (655)
Q Consensus 484 ~~g~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~ 562 (655)
+ +.||++++|++++++++||++|+++++. ++|+|+|+|++++|++|+|+||||+|++++++|++++|+..+||+|++
T Consensus 459 ~--~~np~~~~~~~~~t~~~tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~~~~~~~~l~~~~s~~~~ra~fa~ 536 (646)
T 1w6g_A 459 G--PGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFAT 536 (646)
T ss_dssp B--TTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHHHHTGGGG
T ss_pred C--CCCCCCceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEEccCCcccccCCCCccccccccccc
Confidence 4 4899999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCCCCC
Q 006235 563 YQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSNFFE 642 (655)
Q Consensus 563 ~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd 642 (655)
|+||||||+|+|+||+|+|+||+.++++|++|+++||+|+|+|||+|||||+||+||+|||||||++++||+|||+|||+
T Consensus 537 ~~lwVT~y~d~E~~aag~y~nQs~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~PvMP~~~~~f~L~P~nFF~ 616 (646)
T 1w6g_A 537 KDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFD 616 (646)
T ss_dssp SSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEESSCSS
T ss_pred cceEEeccCCCccccCCCCcccCCCCCChhHHhhCCCCcccCceEEEEeCccccCCCccccCCCCCceEEEEEEecCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 006235 643 SNPLLLRQENA 653 (655)
Q Consensus 643 ~nP~ldvP~~~ 653 (655)
+||+||+|++.
T Consensus 617 ~nP~ldvp~~~ 627 (646)
T 1w6g_A 617 RSPVLDVPANP 627 (646)
T ss_dssp SCTTTTCCCC-
T ss_pred CCCCccCCCcc
Confidence 99999999975
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=8.8e-177 Score=1511.36 Aligned_cols=619 Identities=32% Similarity=0.559 Sum_probs=563.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCCeeEEE
Q 006235 19 ANSLYHPLDPLNPSEINQAKLIVQKSKLGTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGAETHEL 98 (655)
Q Consensus 19 ~~~~~HPldpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~~~~E~ 98 (655)
....+|||||||++||++|+++|+++.... ++++|.+|+|.||+|++||+|+..+. +++|+|+|+|+++.+++++|+
T Consensus 89 ~~~~~HPLdpLs~~Ei~~a~~il~~~~~~~-~~~~F~~i~L~eP~K~~vl~~~~~~~--~~~p~R~A~vv~~~~~~~~e~ 165 (727)
T 1spu_A 89 VEKRPHPLNALTADEIKQAVEIVKASADFK-PNTRFTEISLLPPDKEAVWAFALENK--PVDQPRKADVIMLDGKHIIEA 165 (727)
T ss_dssp CCSSCCTTCCCCHHHHHHHHHHHHTSTTCC-TTCEEEEEEEECCCHHHHHHHHHHCC--CCCCCCEEEEEEEETTEEEEE
T ss_pred ecccCCCCCcCCHHHHHHHHHHHHhcccCC-CCcEEEEEEecCCCHHHHHhHHhcCC--CCCCCeEEEEEEEeCCeEEEE
Confidence 444589999999999999999999875433 57899999999999999999975432 246899999999999999999
Q ss_pred EEeCCCCcEEEeeeeCCCCCCCCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCCeEEccccccccC-CC---CCeeEEE
Q 006235 99 IVDLAIGSITSHNIYKGHGYPPFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSEVSCLPFTVGWYG-EH---VTNRALK 173 (655)
Q Consensus 99 vV~L~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~w~~G~~~-~~---~~rRl~~ 173 (655)
+|+|++++|++++.+++ +||+++.+|+.++|++++++|.|+++|+++|| ++.+|+||||++|+++ ++ ++||++|
T Consensus 166 vV~l~~~~v~~~~~~~~-~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~~~v~~dpw~~g~~~~~~~~~~~~R~~~ 244 (727)
T 1spu_A 166 VVDLQNNKLLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLK 244 (727)
T ss_dssp EEETTTTEEEEEEEETT-CCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCTTSEEEEEECCCCCTTTTCCCSSSCEEE
T ss_pred EEeCCCCceEEEEeCCC-cCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCccceEEEccccccccCCCCCCCCCcEEEE
Confidence 99999999999999884 69999999999999999999999999999999 7899999999999876 22 4799999
Q ss_pred EEEEEecCCCCccccCCCCeEEEEecCCceEEEEeCCccccCCCCCCCCCCCCC----CCCCCccCCCCCceEEEeccEE
Q 006235 174 VVCFYRGGSPNIFARPIEGISMLVDVDKMQIIKYTDRLRLPLPRAEGTDYTSAK----TNPDSVICNVTKGGFTIEGHKV 249 (655)
Q Consensus 174 ~~~~~r~~~~n~Ya~Pl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~----~~~p~~~~~peG~sf~v~g~~V 249 (655)
++||+..+++|+|+|||+||+++||++++||++|++.+.+++|.. ..+|++.. ..+|+.+.||||+||+|+|++|
T Consensus 245 ~~~~~~~~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~-~~~y~~~~~~r~~lkP~~i~QPeG~sF~v~g~~V 323 (727)
T 1spu_A 245 VISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMT-ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 323 (727)
T ss_dssp EEEEECCSSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCS-CCCSSSTTEECCCCCCCEEECTTCCSEEEETTEE
T ss_pred EEEEEECCCCCccccCccceEEEEecccCEEEEEEcCCccccCCC-CCCccccccccCCCCCccccCCCCCCEEECCCcc
Confidence 999997677899999999999999999999999998877666654 34587543 2357778899999999999999
Q ss_pred EeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCC
Q 006235 250 KWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVID 329 (655)
Q Consensus 250 ~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~D 329 (655)
+||||+||||||+|||||||||+|+| .|+.|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++|||
T Consensus 324 ~W~~W~F~vgf~~reGlvL~dV~y~~--~g~~r~V~YrlSl~Em~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcD 401 (727)
T 1spu_A 324 HWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKD 401 (727)
T ss_dssp EETTEEEEEEEETTTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTT
T ss_pred ccCCcEEEEecCCCCceEEEEEEEcC--CCceEEEEEEeEeeEEEEeCCCCCCchhcceeeeccCcCCcccccccccCCC
Confidence 99999999999999999999999998 5688999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEcc
Q 006235 330 CPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDK 409 (655)
Q Consensus 330 Cpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~ 409 (655)
|||+|+|||+++.+++|+|++++|||||||+| .||||||+|++.. ..+++ +++||||+|+|||||||||+|+|||
T Consensus 402 Cpg~i~Y~D~~~~~~~G~p~~~~naiCi~E~d-~G~l~kH~~~~~~-~~~~r---~r~LVv~~i~Tv~NYdYi~~w~F~~ 476 (727)
T 1spu_A 402 APSNAVLLNETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTE---RRELVVRWISTVGNYDYIFDWIFHE 476 (727)
T ss_dssp SCTTCEEEEEEEECTTSCEEEEEEEEEEEEEE-EEEEEEECCTTSC-CEEEE---EEEEEEEEEEEETTEEEEEEEEEET
T ss_pred CCCCCEEeeeEEEcCCCCEEEeCCeEEEeccc-CCcceeeeccCCC-ceeee---ceEEEEEEEEeecccceEEEEEEec
Confidence 99999999999999999999999999999999 5699999999853 44444 4499999999999999999999999
Q ss_pred CccEEEEEEEeEEEeeeeeccccCCCc---ccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCC
Q 006235 410 SGTIKIGVALTGILEMKATSYTNNDQI---TENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNV 486 (655)
Q Consensus 410 dGtIe~~v~aTGil~t~~~~~~~~~~~---~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g 486 (655)
||+||++|+|||||+|+++.++...+. .+.+|||+|+|+++|++|||+|||||||||||++|||+++|+++++.+
T Consensus 477 dG~I~~ev~aTGil~~~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~HqH~f~~RlD~dVdG~~Nsv~~~d~~~~~~~-- 554 (727)
T 1spu_A 477 NGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-- 554 (727)
T ss_dssp TSCEEEEEEEEECCCEEECSCSSTTSTTHHHHTTTEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEECC--
T ss_pred CceEEEEEEEEEEEEeccccccccccccccccCCCcceecCCcccccceeEEEEeecccccCCCCeEEEEeeEEccCC--
Confidence 999999999999999876543222111 136899999999999999999999999999999999999999999873
Q ss_pred CCCCcceeEEEEEEEecChHHHhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeC--CC----cccCCCCCChhhcccc
Q 006235 487 RASPRKSYWTVVKETAKTEAEARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITG--QP----VTSLLSDDDYPQIRAS 559 (655)
Q Consensus 487 ~~np~~~~~~~~~t~~~tE~~a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~--~~----~~~l~~~~s~~~~ra~ 559 (655)
..||++++|++++++++||++|++++++ .+|+ |+|++++|++|+|+||||+|. .+ +.++++++|++++||+
T Consensus 555 ~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~--i~n~~~~N~~G~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~ 632 (727)
T 1spu_A 555 AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLS 632 (727)
T ss_dssp SCSSCSEEEEEEEEEECBHHHHSBCCCTTSEEE--EEEEEEECTTSCEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCG
T ss_pred CCCCCCceeEEEEEEccchhhhhhccCCCCcEE--EeCCCCcCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhc
Confidence 4799999999999999999999999999 6776 999999999999999999993 32 5688899999999999
Q ss_pred ccccceEEeeeCCCcccCCCcCccCCCCCCChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCccceeeeeEEEeCC
Q 006235 560 YTKYQVWVTAYNKSERWAGGFYTDQSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLMPTIHGGFELRPSN 639 (655)
Q Consensus 560 fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~n 639 (655)
||+||||||||+|+|+||+|+|++|+++++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+|
T Consensus 633 fa~~~lwVT~y~d~E~~a~g~y~~q~~~~~gl~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~n 712 (727)
T 1spu_A 633 FMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWN 712 (727)
T ss_dssp GGGCSEEEEECCTTCCCTTCSCCTTCSSCCSHHHHHTTCCBCSSEEEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEES
T ss_pred ccccceEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCccccCCcEEEEecccccCCChhhCCCCcccEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 006235 640 FFESNPLLLRQENA 653 (655)
Q Consensus 640 FFd~nP~ldvP~~~ 653 (655)
|||+||+||+|+++
T Consensus 713 FFd~nPaldvp~~~ 726 (727)
T 1spu_A 713 FFDETPTLGALKKD 726 (727)
T ss_dssp SSSSCTTSCCBC--
T ss_pred CCCCCCCcCCCCCC
Confidence 99999999999874
No 6
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=4.5e-161 Score=1374.53 Aligned_cols=603 Identities=23% Similarity=0.320 Sum_probs=511.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcc---CCCC-----CCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeC-
Q 006235 22 LYHPLDPLNPSEINQAKLIVQKSK---LGTL-----PNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAG- 92 (655)
Q Consensus 22 ~~HPldpLs~~Ei~~a~~~l~~~~---~~~~-----~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~- 92 (655)
-+|||||||++||++|+++|+++. +.+. .+..|.+|+|.||+|++||+||++++ ++|+|+|+|+++++
T Consensus 39 ~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~~Ld~~~---~~P~R~A~vv~~~~~ 115 (746)
T 1tu5_A 39 QSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGS---PPPAREALAIVFFGG 115 (746)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHHHHHHCC---CCCCCEEEEEEEECS
T ss_pred CCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhhhhcCCC---CCCCccEEEEEEeCC
Confidence 369999999999999999998875 2221 12367889999999999999999875 67899999999885
Q ss_pred ---CeeEEEEEe-CCCCcEEEeeee--C--CCCCC----CCCHHHHHHHhccCCCChHHHHHHHHcCC-CCCC--eEEcc
Q 006235 93 ---AETHELIVD-LAIGSITSHNIY--K--GHGYP----PFAFIEFFRASKLPLTYPKFRESIRHRGL-NLSE--VSCLP 157 (655)
Q Consensus 93 ---~~~~E~vV~-L~~~~v~~~~~~--~--~~~~p----~~~~~E~~~~e~~~~~~p~~~~a~~~~g~-~~~~--v~~d~ 157 (655)
+.++|++|+ |+.+++. +.+ + +..+| +++.+|+.++|++++++|.+++++.++|+ ++.+ ++|++
T Consensus 116 ~~~~~v~E~vV~PL~~~~~~--~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 193 (746)
T 1tu5_A 116 QPQPNVTELVVGPLPQPSYM--RDVTVERHGGPLPYYRRPVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGGQKLLT 193 (746)
T ss_dssp SSSCEEEEEEEESSSSCCEE--EECHHHHHSSCEEGGGSCCCHHHHHHHHHHHHHTTGGGGHHHHHHHHCTTTTCCCEEE
T ss_pred CCCCceEEEEecCCCCCcEE--EEcccCCCCCcCCcccCCCCHHHHHHHHHHHHHCHHHHHHHHHhcCCCcccCCEEEeC
Confidence 457899999 9999864 344 3 34578 99999999999999999999999998766 3333 78999
Q ss_pred ccccccCCCCCeeEEEEEEEEecCCCCccccCCCCeEEEEecC-----CceEEEEeCCc----------------c---c
Q 006235 158 FTVGWYGEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVD-----KMQIIKYTDRL----------------R---L 213 (655)
Q Consensus 158 w~~G~~~~~~~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~vD~~-----~~~vv~i~d~~----------------~---~ 213 (655)
|..|+.+..++||++|++||.....+|+|+||| ||+++||++ ++||++|++.+ . +
T Consensus 194 ~~~~p~~~~~g~R~~~~~~~r~~~~~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~ 272 (746)
T 1tu5_A 194 MNSAPRGVQSGDRSTWFGIYYNITKGGPYLHPV-GLELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVV 272 (746)
T ss_dssp ECCSSCSSSTTCCEEEEEEEECCSSSCGGGSEE-EEEEEEECCSSSGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCC
T ss_pred ccccCCcCCCCcEEEEEEEEEecCCCCccccce-eeEEEEeCCCCCcccCEEEEEEECCCccCchhhhhcccccCCcccc
Confidence 976655544679999999975543489999999 799999997 79999998543 1 1
Q ss_pred cCCC-CCCCC--CCCC--CCCCCCccCCCCCceEEEeccEEEeeceEEEEEeeCCccceEeeeEEEecCCCceeEEEEee
Q 006235 214 PLPR-AEGTD--YTSA--KTNPDSVICNVTKGGFTIEGHKVKWANWDFHVSFDARAGIVISTASIFDDKINKFRRVLYKG 288 (655)
Q Consensus 214 ~~p~-~~~~~--y~~~--~~~~p~~~~~peG~sf~v~g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r~~~~r~I~yrl 288 (655)
++|. ..+.. |... ....|+.+.||||+||+|+|++|+||||+||||||+|||||||||+|+ +|||+||+
T Consensus 273 ~~p~~~~~~~~~~~~~~~r~~~p~~i~QPeG~sF~v~g~~V~W~~W~f~vgf~~reGlvL~dv~y~------gr~V~Yrl 346 (746)
T 1tu5_A 273 VIPDDGTGGFWSLKSQVPPGPTPPLQFHPQGPRFSVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQ------GERLAYEI 346 (746)
T ss_dssp CCCC----------------------------CEEEETTEEEESSEEEEEEEETTTEEEEEEEEET------TEEEEEEE
T ss_pred cCccccCcccccccccccCCCCCcceeCCCCCCEEecCCcccCCCcEEEEecCCCCceEEEeeEEC------CeeEEEEE
Confidence 2221 11111 2111 011166788999999999999999999999999999999999999994 39999999
Q ss_pred eeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEEeeeeCCCceec
Q 006235 289 HVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICIFERFSGNVAWR 368 (655)
Q Consensus 289 Sl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~k 368 (655)
|||||+||||||+|.+.+|+|||.+ ||+|.+||+|++||||||+|+|||+++.+++|+|++++|||||||+|.|.||||
T Consensus 347 Sl~Em~VPYgdp~p~~~~~~~~D~~-yG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwk 425 (746)
T 1tu5_A 347 SLQEAGAVYGGNTPAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRR 425 (746)
T ss_dssp EEEEEEEEECCSSHHHHHCEEEGGG-TCTTTTBCCCCBTTTBCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEE
T ss_pred EeeeEEeecCCCCchhhcceeeccc-cCcccccccCccCCCCCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeee
Confidence 9999999999999999999999986 999999999999999999999999999999999999999999999996656999
Q ss_pred eeccCCC-CeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeeccccCCCcccccccceecc
Q 006235 369 HTEINVP-GKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQITENVYGTLVAE 447 (655)
Q Consensus 369 H~~~~~~-~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~~~~yGt~V~p 447 (655)
|+|.+.. .+.++ ++++||||+|+|||||||||+|+|||||+||++|+|||||+|... .. .+.+|||+|+|
T Consensus 426 H~~~~~~~~~~v~---r~r~LVvr~i~TVgNYdYi~~w~F~qdG~Ie~ev~aTGil~t~~~--~~----~~~~yGt~V~~ 496 (746)
T 1tu5_A 426 HHSDFLSHYFGGV---AQTVLVFRSVSTMLNADYVWDMVFYPNGAIEVKLHATGYISSAFL--FG----AARRYGNQVGE 496 (746)
T ss_dssp CCCSTTCCCCCEE---EEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEEC--CT----TGGGGEEEEET
T ss_pred ecccccCCceeee---cccEEEEEEEEeecccceEEEEEEecCCcEEEEEEecceEeeeec--CC----CCCCCcceecC
Confidence 9994433 23444 455999999999999999999999999999999999999997543 22 13689999999
Q ss_pred CcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCCCCccee-----EEEEEEEecChHHHhHhcCC-CCcEEEE
Q 006235 448 NAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKSY-----WTVVKETAKTEAEARIRLGV-EPAELLV 521 (655)
Q Consensus 448 ~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~np~~~~-----~~~~~t~~~tE~~a~~~~~~-~~r~~~i 521 (655)
+++|++|||+|+|||||||||++|||+++|+++++++ ||++++ |++++++++||++|+++++. ++|+| |
T Consensus 497 ~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~----np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-i 571 (746)
T 1tu5_A 497 HTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVPTA----IPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-Y 571 (746)
T ss_dssp TEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEE----ETTEEEEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-E
T ss_pred CccccccceEEEEEecccccCCCCEEEEEeeEEcccC----CCCCcccccceeEEEEEEeeehhhhccccCCCCceEE-E
Confidence 9999999999999999999999999999999999872 888888 89999999999999999999 89999 9
Q ss_pred EcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccceEEeeeCCCcccCCCcCccCCCCCC--ChhccccCCc
Q 006235 522 VNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLAVWSSRNR 599 (655)
Q Consensus 522 ~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~~~~~~~e 599 (655)
+|++++|++|+|+||||+|+++++++++++|...+||+||+|+||||||+|+|+||+|+|++|+.+++ +|.+|+ +||
T Consensus 572 vn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~~-~~e 650 (746)
T 1tu5_A 572 LASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVDFSDFI-NNE 650 (746)
T ss_dssp EEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGGGGGGGEEEEEEECCTTCCCSSCTTTTTCTTSCSCCGGGGC-SCC
T ss_pred eCCCCcCCCCCcceEEECcCCcccccCCCcchhhccccccccceEEeccCCCcccCCccccccCCCCCCccHhhhc-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999966666554 478999 999
Q ss_pred ceeeCCeEEEEEeccccCCCCCCCCCc--cceeeeeEEEeCCCCCCCCCCCCCCC
Q 006235 600 EIENKDIVLWYTVGFHHIPYQEDFPLM--PTIHGGFELRPSNFFESNPLLLRQEN 652 (655)
Q Consensus 600 ~I~~~DiV~W~t~G~~HvPr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvP~~ 652 (655)
+|+|+|||+|||||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 651 ~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf~LrP~nFF~~nP~ld~p~~ 705 (746)
T 1tu5_A 651 TIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQEPSMDSADS 705 (746)
T ss_dssp BCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEEEEEEESSSSSSCCCC----
T ss_pred CccCCceEEEEecccccCCChhccCccCCCccEEEEEEEeCCCCCCCCcccCCCc
Confidence 999999999999999999999999999 77999999999999999999999997
No 7
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=1.2e-159 Score=1361.09 Aligned_cols=599 Identities=19% Similarity=0.278 Sum_probs=521.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCC-C--CCe---EEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeC-
Q 006235 20 NSLYHPLDPLNPSEINQAKLIVQKSKLGT-L--PNL---TFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAG- 92 (655)
Q Consensus 20 ~~~~HPldpLs~~Ei~~a~~~l~~~~~~~-~--~~~---~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~- 92 (655)
+.-+|||||||++||++|+++|+++.... . ..+ .|.+|+|.||+|++||+||++++ ++|+|+|+|+++++
T Consensus 15 ~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~~Ld~~g---~~P~R~A~vv~~~~~ 91 (747)
T 1w7c_A 15 APKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG---DLPPRNARTVVYFGE 91 (747)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHHHHHSCC---CCCCCEEEEEEEECS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHhHhhCCC---CCCCceEEEEEEeCC
Confidence 33489999999999999999999883121 1 123 78999999999999999999875 67899999999874
Q ss_pred ---CeeEEEEEe-CCCCcEEEeeeeC---CC---CCC----CCCHHHHHHHhccCCCChHHHHHH------HHcC-CCCC
Q 006235 93 ---AETHELIVD-LAIGSITSHNIYK---GH---GYP----PFAFIEFFRASKLPLTYPKFRESI------RHRG-LNLS 151 (655)
Q Consensus 93 ---~~~~E~vV~-L~~~~v~~~~~~~---~~---~~p----~~~~~E~~~~e~~~~~~p~~~~a~------~~~g-~~~~ 151 (655)
+.++|++|+ |+.+++++++.++ +. .+| +++.+|+.+++++++ .+++++ +++| +...
T Consensus 92 ~~~~~~~E~vV~PL~~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~~~~---~~~~~~~~~~l~~~~g~~~~~ 168 (747)
T 1w7c_A 92 GEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLN---KNLNTTIMRDVLEGLIGVPYE 168 (747)
T ss_dssp SSSCEEEEEEEESSSCCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHHHHH---HHHTSHHHHHHHHHHHSSCGG
T ss_pred CCCCceEEEEEcCCCCCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHHHHH---HHHHHHhhccchhhcCCcccc
Confidence 567899999 9999998888773 33 357 899999999999999 666666 6788 7544
Q ss_pred CeEEcccccccc--CCCCCeeEEEEEEEEecCCCCccccCCCCeEEEEecC-----CceEEEEeCCc-------------
Q 006235 152 EVSCLPFTVGWY--GEHVTNRALKVVCFYRGGSPNIFARPIEGISMLVDVD-----KMQIIKYTDRL------------- 211 (655)
Q Consensus 152 ~v~~d~w~~G~~--~~~~~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~vD~~-----~~~vv~i~d~~------------- 211 (655)
. |++|++|.. +.+++||++|++||.....+|+|+||| ||+++||++ ++||++|++.+
T Consensus 169 ~--l~~w~~~~~~~~~~~g~R~~~~~~~r~~~~~n~Y~~Pl-g~~~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~ 245 (747)
T 1w7c_A 169 D--MGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPT-GFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAM 245 (747)
T ss_dssp G--EEEEECSSCEECTTTCCEEEEEEEEECCSSSCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHH
T ss_pred e--eeeecccCCcCCCCCCceEEEEEEEEecCCCCccccce-eeEEEEeCCCCCcccCEEEEEEECCcccCchhhhhhhh
Confidence 3 889988854 444679999999975543389999999 799999997 68999997553
Q ss_pred ----cc---cCCCCCCCCCCCCC----------CCCCCccCCCCCceEEEeccE--EEeeceEEEEEeeCCccceEeeeE
Q 006235 212 ----RL---PLPRAEGTDYTSAK----------TNPDSVICNVTKGGFTIEGHK--VKWANWDFHVSFDARAGIVISTAS 272 (655)
Q Consensus 212 ----~~---~~p~~~~~~y~~~~----------~~~p~~~~~peG~sf~v~g~~--V~W~~W~f~~~f~~reGlvL~~v~ 272 (655)
.+ +.|......|.+.. ..+|+.+.||||+||+|+|++ |+||||+||||||+|||||||||+
T Consensus 246 ~~~g~v~~~~~p~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPeG~sF~v~g~~~yV~W~~W~f~vgf~~reGlvL~dv~ 325 (747)
T 1w7c_A 246 QKDDFVTLPKIDVDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDIT 325 (747)
T ss_dssp HSTTCCCCCCCCTTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEE
T ss_pred cccCcccccccCCCCCcccchhhcccCCCCcccCCCCCcccCCCCCCEEEeCCccceeccCCeEEEecCCCCceEEEeee
Confidence 11 22211100021111 123667889999999999999 999999999999999999999999
Q ss_pred EEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeeec
Q 006235 273 IFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFS 352 (655)
Q Consensus 273 ~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~ 352 (655)
|+ +|||+||+|||||+||||||+|+|++|+|||+| ||+|. ||+|++||||||+|+|||+++. ++|+|++++
T Consensus 326 y~------gr~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~g-yG~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~ 396 (747)
T 1w7c_A 326 FK------GERIVYELSLQELIAEYGSDDPFNQHTFYSDIS-YGVGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRT 396 (747)
T ss_dssp ET------TEEEEEEEEEEEEEEEECCSSTTGGGCEEEHHH-HCSSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEE
T ss_pred EC------CEEEEEEEEeeeEEeccCCCCchhheeeeeccc-cCccc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcC
Confidence 94 399999999999999999999999999999999 99999 9999999999999999999999 999999999
Q ss_pred ceeEEeeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeecccc
Q 006235 353 RVICIFERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTN 432 (655)
Q Consensus 353 naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~~~~ 432 (655)
|||||||+|.|.|||||+|+ +.+.+++ +++||||+|+|||||||||+|+|||||+||++|+|||||++... ..
T Consensus 397 naiCihE~d~G~pl~kH~~~--~~~~v~r---~r~LVvr~i~TVgNYdYif~w~F~qdG~Ie~ev~aTGil~t~~~--~~ 469 (747)
T 1w7c_A 397 LSYCVFENQEDYSLLRHTGA--SYSAITQ---NPTLNVRFISTIGNADYNFLYKFFLDGTLEVSVRAAGYIQAGYW--NP 469 (747)
T ss_dssp EEEEEEEEECSSCSEEEEET--TEEEEEC---CEEEEEEEEECCCC-CEEEEEEECTTSCEEEEEEECBCCCCEEC--CT
T ss_pred ceEEEEEEeCCeeeEEeccC--Ccceeee---CceEEEEEEEeccccceEEEEEEecCCeEEEEEEeeEEEecccc--CC
Confidence 99999999966679999999 4444444 45999999999999999999999999999999999999997543 22
Q ss_pred CCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCCCCcce-----eEEEEEEEecChHH
Q 006235 433 NDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRKS-----YWTVVKETAKTEAE 507 (655)
Q Consensus 433 ~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~np~~~-----~~~~~~t~~~tE~~ 507 (655)
+ .+.+|||+|+|+++|++|||+|||||||||||++|||+++|+++++++ ||+++ +|++++++++||++
T Consensus 470 -~--~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~----np~~~~~~~~~~~~~~t~~~tE~~ 542 (747)
T 1w7c_A 470 -E--TSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDVDVE----YPWAPGTVYNTKQIAREVFENEDF 542 (747)
T ss_dssp -T--TCGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEE----CTTSTTCEEEEEEEEEEECCBCCT
T ss_pred -C--CcCCCcceecCCcccCccceEEEEEeccccCCCCCEEEEEeeEEcccC----CCCCcccccceeEEEEEEccchhh
Confidence 1 247899999999999999999999999999999999999999999873 77777 89999999999999
Q ss_pred HhHhcC-C-CCcEEEEEcCCCCCCCCCceeEEEeeCCC-cccCCCCCChhhccccccccceEEeeeCCCcccCCCcCccC
Q 006235 508 ARIRLG-V-EPAELLVVNANQKTKLGNHVGYRLITGQP-VTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQ 584 (655)
Q Consensus 508 a~~~~~-~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~-~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q 584 (655)
|+++++ . ++|+| |+|++++|++|+|+||||+|+++ ++++++++|+..+||+||+|+||||||+|+|+||+|+|++|
T Consensus 543 a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~ 621 (747)
T 1w7c_A 543 NGINWPENGQGILL-IESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTALNTN 621 (747)
T ss_dssp TCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCSSSCGGGGSSEEEEECCTTCCCSCCTTCTT
T ss_pred hhhcCCCCCCceEE-EeCCCccCCCCCcceEEEecCCCCcccccCCCchhhhcchhccCcEEEecCCCCccCCCCCcccc
Confidence 999999 5 69999 99999999999999999999999 99999999999999999999999999999999999999666
Q ss_pred CCCCC--ChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCc--cceeeeeEEEeCCCCCCCCCCCCCCC
Q 006235 585 SRGDD--GLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLM--PTIHGGFELRPSNFFESNPLLLRQEN 652 (655)
Q Consensus 585 ~~~~~--~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvP~~ 652 (655)
+.+++ +|++|+ +||+|+|||||+|||||+||+||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 622 ~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~HiPr~ED~PvM~tP~~~~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 622 ALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp CSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSEEEEEEEEESSSSSCTTTTCSSE
T ss_pred CCCCCCcchhhhh-CCCccccCceEEEEecccccCCChhhcCCcCCCcceEEEEEEeCCcCCCCCCccCCCc
Confidence 66554 489999 999999999999999999999999999999 77999999999999999999999987
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=9.8e-152 Score=1291.71 Aligned_cols=605 Identities=26% Similarity=0.377 Sum_probs=504.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc---C------CCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCC
Q 006235 23 YHPLDPLNPSEINQAKLIVQKSK---L------GTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGA 93 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~~~---~------~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~ 93 (655)
+.+|++||++|+++|.++|.++. + ...++ .+..|+|..|+|++||+|||+++ ++|+|+|+|+|++++
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~~l~Lt~~~~a~~~dN-~i~~iEl~~P~K~~vL~~LD~~~---~~P~R~A~vvi~fG~ 85 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKN-TVFLIEMLLPKKYHVLRFLDKGE---RHPVREARAVIFFGD 85 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCGGGCBCCTTSSCSSSE-EEEEEEEECCCHHHHHHHHHHCC---CCCCCEEEEEEEECS
T ss_pred CCccccCCHHHHHHHHHHHhcCCCCCCcccccCCccCC-eEEEEEecCCCchhhhhhhcCCC---CCCCcceEEEEEcCC
Confidence 35699999999999999999873 1 12356 77889999999999999999986 789999999999965
Q ss_pred e----eEEEEE-eCCCCcEEEeeeeCCCCCC------CCCHHHHHHHhccCC-----CChHHHHHHHHcCCCCCCeEEcc
Q 006235 94 E----THELIV-DLAIGSITSHNIYKGHGYP------PFAFIEFFRASKLPL-----TYPKFRESIRHRGLNLSEVSCLP 157 (655)
Q Consensus 94 ~----~~E~vV-~L~~~~v~~~~~~~~~~~p------~~~~~E~~~~e~~~~-----~~p~~~~a~~~~g~~~~~v~~d~ 157 (655)
+ ..|++| +|+.++..+... ++.+.+ +++..|+.++.+++. ..+.+++.+ ...++.+.-.|+.
T Consensus 86 ~~~P~v~Ey~VGPLP~p~~~~~l~-~~~~~~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~cL~ 163 (731)
T 3hi7_A 86 QEHPNVTEFAVGPLPGPCYMRALS-PRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTT-GFSFQDCHDRCLA 163 (731)
T ss_dssp SSSCEEEEEEEECSSSCCEEEEES-CCTTCCCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHHHHH-SCBSSSCSSSBEE
T ss_pred CCCCeeEEEEEcCCCCCCeeeecc-cCCCCcCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHh-CceecCCCCCEEe
Confidence 4 469999 688877544333 443333 477778877755532 334444443 1223433434655
Q ss_pred c-cccccCCC-CCeeEEEEEEEEecCCCCccccCCCCeEEEEecCC-----ceEEEEe-----------------CCccc
Q 006235 158 F-TVGWYGEH-VTNRALKVVCFYRGGSPNIFARPIEGISMLVDVDK-----MQIIKYT-----------------DRLRL 213 (655)
Q Consensus 158 w-~~G~~~~~-~~rRl~~~~~~~r~~~~n~Ya~Pl~gl~~~vD~~~-----~~vv~i~-----------------d~~~~ 213 (655)
+ ..++.+.+ +.||+| +.+.|..+ ++|.||+ ||+++||+.. ++|.++- ++.+.
T Consensus 164 ~~~~~P~~~~sg~r~~W--~~~~~~~~-g~~l~P~-gl~~~vDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~~ 239 (731)
T 3hi7_A 164 FTDVAPRGVASGQRRSW--LIIQRYVE-GYFLHPT-GLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVD 239 (731)
T ss_dssp EEECSSCSSSTTCCEEE--EEEEECST-TGGGCEE-EEEEEEECCSSSGGGCEEEEEEETTEECSSHHHHHHHHHTTCCC
T ss_pred eecCCCCccCCCCEEEe--hheeccCC-Cceeecc-ceEEEEecCCCChHHcEEEEEEECCEecCCHHHHHHHHhCCCee
Confidence 4 22333433 567777 66777765 6899999 8999999984 5666653 23221
Q ss_pred ----cCCCCCC---------CCCC---C-C-----CCCCCCccCCCCCceEEEeccEEEeeceEEEEEeeCCccceEeee
Q 006235 214 ----PLPRAEG---------TDYT---S-A-----KTNPDSVICNVTKGGFTIEGHKVKWANWDFHVSFDARAGIVISTA 271 (655)
Q Consensus 214 ----~~p~~~~---------~~y~---~-~-----~~~~p~~~~~peG~sf~v~g~~V~W~~W~f~~~f~~reGlvL~~v 271 (655)
+.|..++ ..|. + + ...+|+.+.||||+||+|+|++|+||||+||||||+|||||||||
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~~V~W~~W~F~vgfn~reGlvL~dV 319 (731)
T 3hi7_A 240 VVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNV 319 (731)
T ss_dssp CCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETTEEEEBTEEEEEEEETTTEEEEEEE
T ss_pred EeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCCEEEecCcEEEEecCCCCCcEEEeE
Confidence 1121111 0121 1 1 112456778999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeee
Q 006235 272 SIFDDKINKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQF 351 (655)
Q Consensus 272 ~~~D~r~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~ 351 (655)
+|+| |||+||+|||||+||||||+++|++|+|||+| ||+|.+||+|++||||||+|+|||+++.+++|+|+++
T Consensus 320 ~y~g------r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~ 392 (731)
T 3hi7_A 320 HFGG------ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHY 392 (731)
T ss_dssp EETT------EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTTTBCTTSEEEEEEEEESCSSCEEE
T ss_pred EECC------eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCCCCCCCCEEEeeEEecCCCCEEec
Confidence 9954 89999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cceeEEeeeeCCCceeceec--cCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeec
Q 006235 352 SRVICIFERFSGNVAWRHTE--INVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATS 429 (655)
Q Consensus 352 ~naiCi~E~d~~g~l~kH~~--~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~ 429 (655)
+|||||||+|.|.++|||++ ++++. .++.+|++++||||+|+|||||||||+|+|||||+||+||||||||++...
T Consensus 393 ~naICihE~d~Gi~~~kHtd~~~r~~~-~~~~~~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGilst~~~- 470 (731)
T 3hi7_A 393 PRALCLFEMPTGVPLRRHFNSNFKGGF-NFYAGLKGQVLVLRTTSTVYNADYIWDFIFYPNGVMEAKMHATGYVHATFY- 470 (731)
T ss_dssp EEEEEEEEEECSSCSEEEEEECSSSSE-EEEEEECCEEEEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEECCCEEEC-
T ss_pred CCEEEEEEeeCCeeEEEecccccCCcc-ceeecccccEEEEEEeeecccccEEEEEEEecCCeEEEEEEEEEEEeeccc-
Confidence 99999999997767999986 44332 234455677999999999999999999999999999999999999997643
Q ss_pred cccCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCCCCCcc--eeEEEEEEEecChHH
Q 006235 430 YTNNDQITENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVRASPRK--SYWTVVKETAKTEAE 507 (655)
Q Consensus 430 ~~~~~~~~~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~~np~~--~~~~~~~t~~~tE~~ 507 (655)
.. ++.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++++++ +++|.. +++++++++++||++
T Consensus 471 -~~----~~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~n-P~~~~~~~~~~~~~~t~l~tE~e 544 (731)
T 3hi7_A 471 -TP----EGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITN-PWSPRHRVVQPTLEQTQYSWERQ 544 (731)
T ss_dssp -CG----GGGGSEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEC-TTCTTSEEEEEEEEEEEECBGGG
T ss_pred -CC----CCCCCcceecCCcccccceeEEEEEeccccCCCCCEEEEEeceecCCCC-CCCCCccceeEEEEEEEccchhh
Confidence 21 1368999999999999999999999999999999999999999998865 377764 568999999999999
Q ss_pred HhHhcCC-CCcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCChhhccccccccceEEeeeCCCcccCCCcCccCCC
Q 006235 508 ARIRLGV-EPAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDDYPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSR 586 (655)
Q Consensus 508 a~~~~~~-~~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~ 586 (655)
|++++++ ++|+|+|+|+ ++|++|+|+||||+|++.+.+++.++|...+||+||+|+||||||+|+|+||||+|++|++
T Consensus 545 a~~~~~~~~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~lwVT~y~d~E~~aag~y~~~s~ 623 (731)
T 3hi7_A 545 AAFRFKRKLPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDP 623 (731)
T ss_dssp GCBCTTSCCCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCSEEEEECCGGGSCSCCTTTTTCS
T ss_pred hhhccCCCCceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccceEEecCCCCccCCCccccccCC
Confidence 9999999 8999999999 8899999999999999877777779999999999999999999999999999999998887
Q ss_pred CCC--ChhccccCCcceeeCCeEEEEEeccccCCCCCCCCCc--cceeeeeEEEeCCCCCCCCCCCCCCCC
Q 006235 587 GDD--GLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPLM--PTIHGGFELRPSNFFESNPLLLRQENA 653 (655)
Q Consensus 587 ~~~--~l~~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ldvP~~~ 653 (655)
+++ ||++|+++||+|+|||||+|||||+||+||+|||||| |++++||+|||+||||+||+||+|++.
T Consensus 624 ~~~~~gl~~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nFFd~nPalds~~~v 694 (731)
T 3hi7_A 624 WDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTV 694 (731)
T ss_dssp SSCSCCTTHHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESSSSSCGGGGCTTCE
T ss_pred CCCCCCHHHHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCCCCCCccccCcceE
Confidence 764 7999999999999999999999999999999999999 559999999999999999999999863
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=1.5e-148 Score=1266.77 Aligned_cols=600 Identities=20% Similarity=0.311 Sum_probs=487.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccC---------CCCCCeEEEEEEccCCChHhhHhhHhhccCCCCCCCceeEEEEEeCC
Q 006235 23 YHPLDPLNPSEINQAKLIVQKSKL---------GTLPNLTFHSVDLEEPDKVHVLEWLSKQKRGKLNLHRQAKVVLRAGA 93 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~~~~---------~~~~~~~f~~i~L~EP~K~~vl~~l~~~~~~~~~p~R~A~vv~~~~~ 93 (655)
.++|++||++|+++|.++|.++.. ...++ .+..|+|..|+|++||+|||+++ ++|+|+|+|+|++++
T Consensus 65 ~~vfadLs~~E~~aV~~~L~~~~~l~Lt~~~~a~~~dN-~i~~iEl~~P~K~~vL~~LD~~~---~~P~R~A~vvi~fG~ 140 (797)
T 3pgb_A 65 ENVWYGLTDDETADVAKWLFGRPELNLTTTENAGEWDN-TIALIELHRPNKSEAIPYLDGSG---PAPTRHAHVRLNNRA 140 (797)
T ss_dssp CCSSSCCCHHHHHHHHHHHHTCTTTCCCCTTTCCSSSE-EEEEEEEECCCHHHHHHHHHC------CCCCEEEEEEEECS
T ss_pred CCcccccCHHHHHHHHHHHhcCCCCCCcccccCCccCC-eEEEEEeeCCCHHHHHHhhcCCC---CCCCeeEEEEEEcCC
Confidence 699999999999999999998742 12456 78889999999999999999886 789999999999964
Q ss_pred e----eEEEEE-eCCCC--cEEEeeee---CCC-C-----CCCCCHHHHHHHhccCCCC-hHHHHHHHHc--CCCCCCeE
Q 006235 94 E----THELIV-DLAIG--SITSHNIY---KGH-G-----YPPFAFIEFFRASKLPLTY-PKFRESIRHR--GLNLSEVS 154 (655)
Q Consensus 94 ~----~~E~vV-~L~~~--~v~~~~~~---~~~-~-----~p~~~~~E~~~~e~~~~~~-p~~~~a~~~~--g~~~~~v~ 154 (655)
+ ..|++| +|+.+ +..+.... .+. + ..+++..|+..+.++++.- +..++.+... |++.+.+.
T Consensus 141 ~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g~~~~~~r~~~~~e~~~l~~~~~~~~~~~~~l~~~t~~~~~~~~L~ 220 (797)
T 3pgb_A 141 TTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQGQVRNVEPDGETVYSEWLFKISASIADITLDLWNGTALGLENDTLD 220 (797)
T ss_dssp SSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTTEEECSCCCTTHHHHTTHHHHHHHTHHHHHHHHSCCCSSSTTCCEE
T ss_pred CCCCceEEEEEcCCCCCCcceeEEccccccCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCeEe
Confidence 4 459999 58877 44433332 111 1 1235677777776664433 3333333222 22222222
Q ss_pred EccccccccCCC-CCeeEEEEEEEEecCC---CCccccCCCCeEEEEecC-----CceEEEEe-----------------
Q 006235 155 CLPFTVGWYGEH-VTNRALKVVCFYRGGS---PNIFARPIEGISMLVDVD-----KMQIIKYT----------------- 208 (655)
Q Consensus 155 ~d~w~~G~~~~~-~~rRl~~~~~~~r~~~---~n~Ya~Pl~gl~~~vD~~-----~~~vv~i~----------------- 208 (655)
+ |...+.+.. +.|+.| ++|.|... +++|+||+ ||+++||+. .++|.++-
T Consensus 221 ~--~~~~P~g~~sg~r~~W--~~~~~~~~g~~d~~~lhP~-gl~~lvDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~ 295 (797)
T 3pgb_A 221 I--WGIDPLWQDDGRIIRW--DMFWNMADDEFDSETLLPL-GLYLKSDVTGRDPSQWKLLGWMYNDIFYETTEEFRKAYW 295 (797)
T ss_dssp E--EECSSCBCSTTCCEEE--EEEEECCCTTCCCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHT
T ss_pred e--eccCCCCcCCCCEEEe--eeeeccCCCccccceeecc-ceEEEEecCCCChhHcEEEEEEECCEecCCHHHHHHHHh
Confidence 1 222222332 345545 77777633 56999999 799999999 55666653
Q ss_pred CCccccCCCCCCCCCCC----CC-----CCCCCccCCCCCceEEEe--ccEEEeeceEEEEEeeCCccceEeeeEEEecC
Q 006235 209 DRLRLPLPRAEGTDYTS----AK-----TNPDSVICNVTKGGFTIE--GHKVKWANWDFHVSFDARAGIVISTASIFDDK 277 (655)
Q Consensus 209 d~~~~~~p~~~~~~y~~----~~-----~~~p~~~~~peG~sf~v~--g~~V~W~~W~f~~~f~~reGlvL~~v~~~D~r 277 (655)
++....+++.....|.. +. ..+|+.+.||||+||+|+ ||+|+||||+||||||+||||+||||+|+
T Consensus 296 ~g~~~~~~~~~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~~W~F~vgfn~ReGlvL~dV~y~--- 372 (797)
T 3pgb_A 296 SPGFVKLKPNVDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKYK--- 372 (797)
T ss_dssp STTCCCCCCCCCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEETTEEEEEEEETTTEEEEEEEEET---
T ss_pred CCCeeecCCCCCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeCCcEEEEecCCCCceEEEccccC---
Confidence 22222222111223321 11 124677889999999997 79999999999999999999999999984
Q ss_pred CCceeEEEEeeeeeeEEeecCCCCCcccccceeccCCCCCCccccCCCCCCCCCCCcEEeeeEEeCCCCCeeeecceeEE
Q 006235 278 INKFRRVLYKGHVSETFVPYMDPTNEWYFKTFMDLGEFGFGRAAGSLQPVIDCPSNAEYLDGYVAGADGQPQQFSRVICI 357 (655)
Q Consensus 278 ~~~~r~I~yrlSl~Em~vpYgdp~~~~~~k~~~D~ge~G~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi 357 (655)
+|||+||+|||||+|||||++|.+.+++|+| ||||+|.+||+|++||||||+|+|||+++.++ |+|++++|||||
T Consensus 373 ---gr~V~YrlSlsEm~VPYg~~~P~~~~~af~D-~eyG~G~~an~L~lGcDCpg~i~YlD~~~~~~-~~p~~~~NaICi 447 (797)
T 3pgb_A 373 ---GQRVLYELGLQEALAHYAANDPVQSSVAYLD-SYYGFGPYAFELLKGYDCPSYASYLNTSFYKD-EETHTHVDSLCL 447 (797)
T ss_dssp ---TEEEEEEEEEEEEEEEECCSSHHHHHCEEEG-GGTCSGGGCCCCCBTTTBCTTCEEEEEEEEET-TEEEEEEEEEEE
T ss_pred ---CeeEEEEeEeeeeEEeCCCCChhhhcceeee-cccCCccccccCccCCCCCCCCEEeeeEEecC-CCceEeccEEEE
Confidence 3899999999999999999876655555666 59999999999999999999999999999987 678999999999
Q ss_pred eeeeCCCceeceeccCCCCeeEeecccceEEEEEEEEEeecceeEEEEEEccCccEEEEEEEeEEEeeeeeccccCCCcc
Q 006235 358 FERFSGNVAWRHTEINVPGKVIRSGEPEVSLVVRMVTTVGNYDYVLDWEFDKSGTIKIGVALTGILEMKATSYTNNDQIT 437 (655)
Q Consensus 358 ~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TV~NYDYi~~~~F~~dGtIe~~v~aTGil~t~~~~~~~~~~~~ 437 (655)
||+|.|.|||||++. +.++++| +++||||+|+|||||||||+|+|||||+||+||||||||++.. +. +
T Consensus 448 hE~D~G~~lwKHt~~--~~~~v~r---~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGiLst~~--~~--~--- 515 (797)
T 3pgb_A 448 FEFDADYPMARHSTS--EFVSVTK---NVYFTLRSVSTIGNADYMFSYNFHMDGTIGVEVRASGYIQSAY--YA--N--- 515 (797)
T ss_dssp EEEECSSCSEEEECS--SEEEEEC---CEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEE--CT--T---
T ss_pred EEeeCCceeEEeccC--CcceEEe---ccEEEEEEEeeeccccEEEEEEEecCCeEEEEEEEEEEEEecc--cC--C---
Confidence 999977789999996 3344444 5599999999999999999999999999999999999999752 21 1
Q ss_pred cccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeeccCCC-CCCcceeEEEEEEEecChHHHhHhcCC-C
Q 006235 438 ENVYGTLVAENAVAVNHDHFVTYYLDLDVDGNGNSFVKSKLKTARVSNVR-ASPRKSYWTVVKETAKTEAEARIRLGV-E 515 (655)
Q Consensus 438 ~~~yGt~V~p~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~g~-~np~~~~~~~~~t~~~tE~~a~~~~~~-~ 515 (655)
+.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++++++++ .+|++++|++++++++||+||+++++. +
T Consensus 516 ~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~~~~t~l~tE~eA~~~~~~~~ 595 (797)
T 3pgb_A 516 NQDFGYQIHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNG 595 (797)
T ss_dssp CGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTTTTCEEEEEEEEEEECCBGGGCEECCCGGG
T ss_pred CCCccceecCCccccccceEEEEeeccCCCCCCCeEEEEeeEEccCCCCCCCCcccceeEEEEEEccchhhhhhhcCCCC
Confidence 46899999999999999999999999999999999999999999887642 235689999999999999999999999 9
Q ss_pred CcEEEEEcCCCCCCCCCceeEEEeeCCCcccCCCCCC-hhhccccccccceEEeeeCCCcccCCCcCccCCCCCC--Chh
Q 006235 516 PAELLVVNANQKTKLGNHVGYRLITGQPVTSLLSDDD-YPQIRASYTKYQVWVTAYNKSERWAGGFYTDQSRGDD--GLA 592 (655)
Q Consensus 516 ~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s-~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~--~l~ 592 (655)
+|.|+|+|++++|++|+|+||||+|++++++|+.++| ..++||+||+|+||||||+|+|+||+|+|++|+++++ ++.
T Consensus 596 ~r~~~ivN~~~~N~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E~~aaG~y~~qs~~~~~v~~~ 675 (797)
T 3pgb_A 596 QTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFS 675 (797)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTCCCSCCTTGGGCTTSCSCCGG
T ss_pred CceEEEeCCCCcCCCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCccCCCCCCcccCCCCCccchh
Confidence 9999999999999999999999999987777775555 5888999999999999999999999999999998865 456
Q ss_pred ccccCCcceeeCCeEEEEEeccccCCCCCCCCC--ccceeeeeEEEeCCCCCCCCCCCCCCC
Q 006235 593 VWSSRNREIENKDIVLWYTVGFHHIPYQEDFPL--MPTIHGGFELRPSNFFESNPLLLRQEN 652 (655)
Q Consensus 593 ~~~~~~e~I~~~DiV~W~t~G~~HvPr~ED~Pv--mp~~~~~f~L~P~nFFd~nP~ldvP~~ 652 (655)
+|+ +||+|+|||||+|||||+||+||+||||| ||++++||+|||+||||+||+||+|.+
T Consensus 676 ~~~-~nesI~neDiVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~~~ 736 (797)
T 3pgb_A 676 TFF-NGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETVNM 736 (797)
T ss_dssp GGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCSCE
T ss_pred hhc-CCCccccCceEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCccc
Confidence 777 99999999999999999999999999999 999999999999999999999999975
No 10
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=21.00 E-value=35 Score=26.69 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 006235 25 PLDPLNPSEINQAKLIVQ 42 (655)
Q Consensus 25 PldpLs~~Ei~~a~~~l~ 42 (655)
|-.+||+.|+++|.++|.
T Consensus 37 pk~~Ls~~el~~A~~yl~ 54 (55)
T 2cs7_A 37 PKNELSASELAAAEAFLS 54 (55)
T ss_dssp EGGGSCHHHHHHHHHHHH
T ss_pred EhHHCCHHHHHHHHHHhc
Confidence 678999999999999875
No 11
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=20.81 E-value=57 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 006235 23 YHPLDPLNPSEINQAKLIVQK 43 (655)
Q Consensus 23 ~HPldpLs~~Ei~~a~~~l~~ 43 (655)
.-|+..||.+||++++++|+.
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHh
Confidence 345779999999999999985
No 12
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=20.10 E-value=61 Score=26.17 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.6
Q ss_pred CCCC---CCCHHHHHHHHHHHHh
Q 006235 24 HPLD---PLNPSEINQAKLIVQK 43 (655)
Q Consensus 24 HPld---pLs~~Ei~~a~~~l~~ 43 (655)
-||. .||.+||.+++++|+.
T Consensus 60 P~~~~~~~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 60 PPKGTCADCSDDELKAAIGKMSG 82 (83)
T ss_dssp CSSSSCSSCCHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 3554 4999999999999985
Done!