BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006236
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ +AA G + V+K ++E G +VN A +G T LH A N EVVKLLL A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 57
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D G P+ L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ +AA G + V+K ++E G +VN A +G T LH A N EVVKLLL A
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 90
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D G P+ L
Sbjct: 91 GADVNAKDKNGRTPLHL 107
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ +AA G + V+K ++E G +VN A +G T LH A N EVVKLLL A
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 123
Query: 124 SA 125
A
Sbjct: 124 GA 125
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
+G T LH A N EVVKLLL A ADVN D G P+ L
Sbjct: 1 NGRTPLHLA---ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ +AA G + V+K ++E G +VN A +G T LH A N EVVKLLL A
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 57
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D G P+ L
Sbjct: 58 GADVNAKDKNGRTPLHL 74
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ +AA G + V+K ++E G +VN A +G T LH A N EVVKLLL A
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 90
Query: 124 SA 125
A
Sbjct: 91 GA 92
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
+G T LH A N EVVKLLL A ADVN D G P+ L
Sbjct: 1 NGRTPLHLA---ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A DG+T LH A G E+V++LL A
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 124
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G P DL
Sbjct: 125 ADVNAQDKFGKTPFDL 140
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 30/117 (25%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP---------VDLIPVAMK- 146
DG+T LH A G E+V++LL A ADVN D G P ++++ V +K
Sbjct: 34 DGYTPLHLAAREG---HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 147 ------------SPLHSRKRA-----IELLLKGDHTIFEEEELVNIPVPQLSKDGTE 186
+PLH R +E+LLK + +++ P ++G E
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A DG+T LH A G E+V++LL A
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 124
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G P DL
Sbjct: 125 ADVNAQDKFGKTPFDL 140
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 30/117 (25%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP---------VDLIPVAMK- 146
DG+T LH A G E+V++LL A ADVN D G P ++++ V +K
Sbjct: 34 DGYTPLHLAAREG---HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 147 ------------SPLHSRKRA-----IELLLKGDHTIFEEEELVNIPVPQLSKDGTE 186
+PLH R +E+LLK + +++ P +G E
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ AA G V+K +I G +VN A SDG T LH A G EVVKLL+S
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKG-ADVN-AKDSDGRTPLHHAAENGHK---EVVKLLISK 125
Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
ADVN D G P+DL + H + ++LL K
Sbjct: 126 GADVNTSDSDGRTPLDL------AREHGNEEVVKLLEK 157
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
AA G+ +K +IE G +VN A SDG T LH A G EVVKLL+S ADVN
Sbjct: 11 AAENGNKDRVKDLIENG-ADVN-ASDSDGRTPLHHAAENGHK---EVVKLLISKGADVNA 65
Query: 130 VDVYGNKPV 138
D G P+
Sbjct: 66 KDSDGRTPL 74
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ AA G ++K +I G +VN A SDG T LH A G E+VKLL+S
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKG-ADVN-AKDSDGRTPLHYAAKEGHK---EIVKLLISK 125
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D G P+DL
Sbjct: 126 GADVNTSDSDGRTPLDL 142
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
AA G+ +K +IE G +VN A SDG T LH A G E+VKLL+S ADVN
Sbjct: 11 AAENGNKDRVKDLIENG-ADVN-ASDSDGRTPLHYAAKEGHK---EIVKLLISKGADVNA 65
Query: 130 VDVYGNKPV 138
D G P+
Sbjct: 66 KDSDGRTPL 74
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 55 GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSF 114
+ KMG TP+ +AA++G + +++ +++ G +VN A + GFT LH A G
Sbjct: 75 AADKMG---DTPLHLAALYGHLEIVEVLLKNG-ADVN-ATDTYGFTPLHLAADAG---HL 126
Query: 115 EVVKLLLSASADVNCVDVYGNKPVDL 140
E+V++LL ADVN D +G D+
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
+TP+ +AA+ G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHG-ADVN-AADKMGDTPLHLAALYG---HLEIVEVLLKN 102
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D YG P+ L
Sbjct: 103 GADVNATDTYGFTPLHL 119
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G +++ +++ G +VN A +DG+T LH A N E+V++LL
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHG-ADVN-ARDTDGWTPLHLA---ADNGHLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D YG P+ L
Sbjct: 104 ADVNAQDAYGLTPLHL 119
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A + G T LH A G E+V++LL
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYG-ADVN-AQDAYGLTPLHLAADRG---HLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA +G + +++ +++ G +VN A SDG T LH A G E+V++LL
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNG-ADVN-AMDSDGMTPLHLAAKWG---YLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +V+ A G+T LH A G E+V++LL
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHG-ADVD-ASDVFGYTPLHLAAYWG---HLEIVEVLLKNG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN +D G P+ L
Sbjct: 104 ADVNAMDSDGMTPLHL 119
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
A + G T LH A G E+V++LL ADV+ DV+G P+ L
Sbjct: 42 AADNTGTTPLHLAAYSG---HLEIVEVLLKHGADVDASDVFGYTPLHL 86
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA +G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIXGSTPLHLAALIG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
ADVN VD +G+ P+ L + + +E+LLK
Sbjct: 104 ADVNAVDTWGDTPLHL------AAIMGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA+ G + +++ +++ G +VN A + G T LH A G E+V++LL
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIMG---HLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A DG+T LH A G E+V++LL A
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
DG+T LH A G E+V++LL A ADVN D G P+ L
Sbjct: 46 DGYTPLHLAAREG---HLEIVEVLLKAGADVNAKDKDGYTPLHL 86
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 34 REIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93
R + G DV+ +W TP+ +AAM G + +++ +++ G +VN A
Sbjct: 31 RILTANGADVNANDYW-------------GHTPLHLAAMLGHLEIVEVLLKNG-ADVN-A 75
Query: 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G+ G T LH A E+V++LL ADVN D +G D+
Sbjct: 76 TGNTGRTPLHLAAWA---DHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA +G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIMGSTPLHLAALIG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
ADVN VD +G+ P+ L + + +E+LLK
Sbjct: 104 ADVNAVDTWGDTPLHL------AAIMGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA+ G + +++ +++ G +VN A + G T LH A G E+V++LL
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIMG---HLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 65 TPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
TP+ +AA+FG + +++ +++ G VN N +G T LH A G E+V++LL
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDM---EGHTPLHLAAMFG---HLEIVEVLLKN 135
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G T L A G E+V++LL
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNG-ADVN-AVDHAGMTPLRLAALFG---HLEIVEVLLKNG 103
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
ADVN D+ G+ P+ L + + +E+LLK
Sbjct: 104 ADVNANDMEGHTPLHL------AAMFGHLEIVEVLLK 134
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRA 155
+ G+T LH A N E+V++LL ADVN VD G P+ L + L
Sbjct: 45 ASGWTPLHLA---AFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL------AALFGHLEI 95
Query: 156 IELLLK 161
+E+LLK
Sbjct: 96 VEVLLK 101
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A S GFT LH A G E+V++LL
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNG-ADVN-ASDSHGFTPLHLAAKRG---HLEIVEVLLKNG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 61 FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
F TP+ +AA FG + +++ +++ G +VN A S G T LH A G E+V++L
Sbjct: 45 FTGWTPLHLAAHFGHLEIVEVLLKNG-ADVN-AKDSLGVTPLHLAARRG---HLEIVEVL 99
Query: 121 LSASADVNCVDVYGNKPVDL 140
L ADVN D +G P+ L
Sbjct: 100 LKNGADVNASDSHGFTPLHL 119
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
+TP+ +AA G V+K ++ G + N A SDG T LH A G EVVKLLLS
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQG-ADPN-AKDSDGKTPLHLAAENGHK---EVVKLLLSQ 125
Query: 124 SADVNCVDVYGNKPVDL 140
AD N D G P+DL
Sbjct: 126 GADPNTSDSDGRTPLDL 142
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
AA G+ +K ++E G +VN A SDG T LH A G EVVKLLLS AD N
Sbjct: 11 AAENGNKDRVKDLLENG-ADVN-ASDSDGKTPLHLAAENGHK---EVVKLLLSQGADPNA 65
Query: 130 VDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 160
D G P+ L + + K ++LLL
Sbjct: 66 KDSDGKTPLHL------AAENGHKEVVKLLL 90
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA FG + +++ +++ G +VN A +G T LH A G E+V++LL
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNG-ADVN-AKDDNGITPLHLAANRG---HLEIVEVLLKYG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G+T LH A G E+V++LL ADVN D G+ P+ L
Sbjct: 47 GWTPLHLAAYWG---HLEIVEVLLKNGADVNAYDTLGSTPLHL 86
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A S G T LH A G E+V++LL
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNG-ADVN-ASDSAGITPLHLAAYDG---HLEIVEVLLKHG 95
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
ADVN D G P+ L + L + +E+LLK
Sbjct: 96 ADVNAYDRAGWTPLHL------AALSGQLEIVEVLLK 126
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G+T LH A G E+V++LL
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHG-ADVN-AYDRAGWTPLHLAALSG---QLEIVEVLLKHG 128
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D G D+
Sbjct: 129 ADVNAQDALGLTAFDI 144
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 50 YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG 109
+G+ +G K ++ AA G ++ ++ G +VN A +G T LH A
Sbjct: 2 FGQDLGKK---------LLEAAAAGQDDEVRILMANG-ADVN-ATDDNGLTPLHLA---A 47
Query: 110 ANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
AN E+V++LL ADVN D G P+ L
Sbjct: 48 ANGQLEIVEVLLKNGADVNASDSAGITPLHL 78
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA+ G + +++ +++ G +V+ A GFT LH A G E+V++LL
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHG-ADVD-AADVYGFTPLHLAAMTG---HLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D+ G+ P+ L
Sbjct: 104 ADVNAFDMTGSTPLHL 119
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AAM G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYG-ADVN-AFDMTGSTPLHLAADEG---HLEIVEVLLKYG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 67 IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD 126
++ AA G ++ +I G +VN A + G T LH A G E+V++LL AD
Sbjct: 18 LLEAARAGQDDEVRILIANG-ADVN-AVDNTGLTPLHLAAVSG---HLEIVEVLLKHGAD 72
Query: 127 VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
V+ DVYG P+ L AM L +E+LLK
Sbjct: 73 VDAADVYGFTPLHL--AAMTGHL----EIVEVLLK 101
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
RTP+ AA G ++K ++ G + N A SDG T LH A G E+VKLLLS
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKG-ADPN-AKDSDGRTPLHYAAENGHK---EIVKLLLSK 125
Query: 124 SADVNCVDVYGNKPVDL 140
AD N D G P+DL
Sbjct: 126 GADPNTSDSDGRTPLDL 142
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
A SDG T LH A G E+VKLLLS AD N D G P+
Sbjct: 32 ASDSDGRTPLHYAAENGHK---EIVKLLLSKGADPNAKDSDGRTPL 74
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 65 TPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
TP+ +AA G + V++ +++ G VN N +GFT LH A G E+V++LL
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNAN---DHNGFTPLHLAANIG---HLEIVEVLLKH 135
Query: 124 SADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA FG + +++ +++ G +VN A S G T LH A G EVV++LL
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNG-ADVN-ADDSLGVTPLHLAADRG---HLEVVEVLLKNG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D G P+ L
Sbjct: 104 ADVNANDHNGFTPLHL 119
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G+T LH A G E+V++LL ADVN D G P+ L
Sbjct: 47 GWTPLHLAAYFG---HLEIVEVLLKNGADVNADDSLGVTPLHL 86
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A +DG T LH A G E+V++LL
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHG-ADVN-AYDNDGHTPLHLAAKYG---HLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G T LH A A G E+V++LL
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNG-ADVN-ASDLTGITPLHLAAATG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D G+ P+ L
Sbjct: 104 ADVNAYDNDGHTPLHL 119
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
A +DG+T LH A +N E+V++LL ADVN D+ G P+ L
Sbjct: 42 ATDNDGYTPLHLA---ASNGHLEIVEVLLKNGADVNASDLTGITPLHL 86
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A +GFT LH A G E+V++LL
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHG-ADVN-AKDYEGFTPLHLAAYDG---HLEIVEVLLKYG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A + G T LH A N E+V++LL
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYG-ADVN-AWDNYGATPLHLA---ADNGHLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D G P+ L
Sbjct: 104 ADVNAKDYEGFTPLHL 119
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A G E+V++LL ADVN D YG P+ L
Sbjct: 47 GHTPLHLAAKTG---HLEIVEVLLKYGADVNAWDNYGATPLHL 86
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G+T LH A G E+V++LL
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYG-ADVN-AMDYQGYTPLHLAAEDG---HLEIVEVLLKYG 136
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ + G + +++ +++ +VN A G+T LH A G E+V++LL
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYA-ADVN-ASDKSGWTPLHLAAYRG---HLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN +D G P+ L
Sbjct: 104 ADVNAMDYQGYTPLHL 119
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNG-ADVN-ALDFSGSTPLHLAAKRG---HLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D G+ P+ L
Sbjct: 104 ADVNADDTIGSTPLHL 119
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 59 MGFEERTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVV 117
+ F TP+ +AA G + +++ +++ G VN + GS T LH A G E+V
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS---TPLHLAADTG---HLEIV 129
Query: 118 KLLLSASADVNCVDVYGNKPVDL 140
++LL ADVN D +G D+
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDI 152
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A G E+V++LL ADVN +D G+ P+ L
Sbjct: 47 GDTPLHLAARVG---HLEIVEVLLKNGADVNALDFSGSTPLHL 86
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 95 GSD-GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
GSD G L A AG + V++L++ ADVN D YG+ P+ L
Sbjct: 11 GSDLGKKLLEAARAGQDDE----VRILMANGADVNAEDTYGDTPLHL 53
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF 73
+N ++LL+ S + +R I ++VD+PS I T + A
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRII----YEVDDPSLPNDEGI----------TALHNAVCA 80
Query: 74 GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV 127
G ++K++++ G VNVN A SDG+T LHCA + ++ +V K L+ + A V
Sbjct: 81 GHTEIVKFLVQFG-VNVN-AADSDGWTPLHCA---ASCNNVQVCKFLVESGAAV 129
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
+G TALH AV G E+VK L+ +VN D G P+
Sbjct: 69 EGITALHNAVCAGHT---EIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
++RTP+M AA + +KY+I+ G + + ++G T LH A G +EVV+ LL
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPK--DAEGSTCLHLAAKKG---HYEVVQYLL 97
Query: 122 S-ASADVNCVDVYGNKPV 138
S DVNC D G P+
Sbjct: 98 SNGQMDVNCQDDGGWTPM 115
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDG-FTALHCAVAGGANSSFEVVKLL 120
E T + +AA G V++Y++ G+++VN C DG +T + + ++VKLL
Sbjct: 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVN--CQDDGGWTPM---IWATEYKHVDLVKLL 130
Query: 121 LSASADVNCVD 131
LS +D+N D
Sbjct: 131 LSKGSDINIRD 141
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A + G T LH A G E+V++LL
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYG-ADVN-AEDNFGITPLHLAAIRG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR 152
A DG T LH A G E+V++LL ADVN D +G P+ L + +
Sbjct: 42 ALDEDGLTPLHLAAQLG---HLEIVEVLLKYGADVNAEDNFGITPLHL------AAIRGH 92
Query: 153 KRAIELLLK 161
+E+LLK
Sbjct: 93 LEIVEVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA + + +++ +++ G +VN A +DG T LH A G E+V++LL
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHG-ADVN-AHDNDGSTPLHLAALFG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A S G T LH A G E+V++LL
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN-ASDSWGRTPLHLAATVG---HLEIVEVLLEYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A G E+V++LL ADVN D +G P+ L
Sbjct: 47 GVTPLHLAAKRG---HLEIVEVLLKHGADVNASDSWGRTPLHL 86
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVA 77
++LL+ S + +R I ++VD+PS I T + A G
Sbjct: 39 ALLLDSSLEGEFDLVQRII----YEVDDPSLPNDEGI----------TALHNAVCAGHTE 84
Query: 78 VLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV 127
++K++++ G VNVN A SDG+T LHCA + ++ +V K L+ + A V
Sbjct: 85 IVKFLVQFG-VNVN-AADSDGWTPLHCA---ASCNNVQVCKFLVESGAAV 129
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
+G TALH AV G E+VK L+ +VN D G P+
Sbjct: 69 EGITALHNAVCAGHT---EIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G V KY+++ K VN A D T LHCA G + +VKLLL +
Sbjct: 49 TPLHMAARAGHTEVAKYLLQN-KAKVN-AKAKDDQTPLHCAARIGHTN---MVKLLLENN 103
Query: 125 ADVNCVDVYGNKPVDL 140
A+ N G+ P+ +
Sbjct: 104 ANPNLATTAGHTPLHI 119
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 58 KMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVV 117
K GF TP+ +AA +G V V + ++E + A G +G T LH AV +++ ++V
Sbjct: 144 KKGF---TPLHVAAKYGKVRVAELLLE--RDAHPNAAGKNGLTPLHVAV---HHNNLDIV 195
Query: 118 KLLL 121
KLLL
Sbjct: 196 KLLL 199
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIE 157
G T LH A N E+V++LL ADVN +D G P+ L VAM L +E
Sbjct: 47 GLTPLHLA---AMNDHLEIVEVLLKNGADVNAIDAIGETPLHL--VAMYGHL----EIVE 97
Query: 158 LLLK 161
+LLK
Sbjct: 98 VLLK 101
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AAM + +++ +++ G +VN A + G T LH G E+V++LL
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNG-ADVN-AIDAIGETPLHLVAMYG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE-VVKLLLSA 123
T +M AA G V VLK +++ +VN AC + G AL A+ +S E + LLL
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIE 157
ADVN G P LI K L +R +E
Sbjct: 229 GADVNVRGERGKTP--LILAVEKKHLGLVQRLLE 260
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 55 GSKKMGFEER----TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
G + F+E TP+ A +++ ++ G V R +G T A G
Sbjct: 47 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK--KNGATPFILAAIAG- 103
Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
S +++KL LS ADVN D YG M++ ++ + +A++ L K
Sbjct: 104 --SVKLLKLFLSKGADVNECDFYG------FTAFMEAAVYGKVKALKFLYK 146
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 51 GRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
G GSK + TP+ AA G +K ++ G +VN A DG T LH A
Sbjct: 1 GHMWGSK----DGNTPLHNAAKNGHAEEVKKLLSKG-ADVN-ARSKDGNTPLHLA---AK 51
Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
N E+VKLLL+ ADVN GN P L
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHL 81
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G ++K ++ G +VN A DG T H A G + E+VKLL +
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKG-ADVN-ARSKDGNTPEHLAKKNGHH---EIVKLLDAKG 98
Query: 125 ADVN 128
ADVN
Sbjct: 99 ADVN 102
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A + G T L+ A G E+V++LL
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYG-ADVN-AKDATGITPLYLAAYWG---HLEIVEVLLKHG 124
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 125 ADVNAQDKFGKTAFDI 140
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A A G E+V++LL ADVN VD G P+ L
Sbjct: 35 GRTPLHMAAAVG---HLEIVEVLLRNGADVNAVDTNGTTPLHL 74
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 57 KKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFE 115
K + T + +A++ G + +++ ++ G VN C +G TALH AV + +
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC--NGRTALHLAVDL---QNPD 165
Query: 116 VVKLLLSASADVNCVDVYGNKPVDL 140
+V LLL ADVN V G P L
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQL 190
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 254 CPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDEIG--CARKVCFFAHKPEELR 310
C EF++G C +G+ C +AH + + + +C D I C R+ C + H P L+
Sbjct: 23 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 82
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
+G T LH A N EVVKLLL A ADVN D +G D+
Sbjct: 38 NGSTPLHLA---ARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE-VVKLLLSA 123
T +M AA G V VLK +++ +VN AC + G AL A+ +S E + LLL
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIE 157
ADVN G P LI K L +R +E
Sbjct: 209 GADVNVRGERGKTP--LILAVEKKHLGLVQRLLE 240
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 102 LHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
L A+AG S +++KL LS ADVN D YG M++ ++ + +A++ L K
Sbjct: 77 LLAAIAG----SVKLLKLFLSKGADVNECDFYG------FTAFMEAAVYGKVKALKFLYK 126
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
DG+T LH A G E+V++LL A ADVN D +G D+
Sbjct: 34 DGYTPLHLAAREG---HLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD--GFTALHCAVAGGANSSFEVVKLLLS 122
TP+ +AA G + +++ +++ G +VN SD G T LH A G E+V++LL
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN---ASDIWGRTPLHLAATVG---HLEIVEVLLE 101
Query: 123 ASADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A G E+V++LL ADVN D++G P+ L
Sbjct: 47 GVTPLHLAAKRG---HLEIVEVLLKHGADVNASDIWGRTPLHL 86
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+M AA G +AV++++++ G G + +L C + ++VK+LL
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLLDCG 92
Query: 125 ADVNCVDVYGNKPV 138
DVN D G P+
Sbjct: 93 VDVNEYDWNGGTPL 106
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+M AA G +AV++++++ G G + +L C + ++VK+LL
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLLDCG 90
Query: 125 ADVNCVDVYGNKPV 138
DVN D G P+
Sbjct: 91 VDVNEYDWNGGTPL 104
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 57 KKMGFEERTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFE 115
K + T + +A++ G + +++ ++ G VN C +G TALH AV + +
Sbjct: 108 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC--NGRTALHLAVD---LQNPD 162
Query: 116 VVKLLLSASADVNCVDVYGNKPVDL 140
+V LLL ADVN V G P L
Sbjct: 163 LVSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 42/137 (30%)
Query: 63 ERTPIMIAAMFGSVAVLKYVIETGK----------VNVNRACGSD--------------- 97
+ TP+ AA + V+V++Y+++ G V ++ AC
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105
Query: 98 ------GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS 151
FT LH A A G +E+ KLLL AD + GN P+DL+
Sbjct: 106 NVADLWKFTPLHEAAAKG---KYEICKLLLQHGADPTKKNRDGNTPLDLV--------KD 154
Query: 152 RKRAIELLLKGDHTIFE 168
I+ LL+GD + +
Sbjct: 155 GDTDIQDLLRGDAALLD 171
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +AA G + +++ +++ G +VN A G T LH A G E+V++LL
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG-ADVN-ARDIWGRTPLHLAATVG---HLEIVEVLLEYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
ADVN D +G D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T LH A G E+V++LL ADVN D++G P+ L
Sbjct: 47 GVTPLHLAAKRG---HLEIVEVLLKHGADVNARDIWGRTPLHL 86
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETG-KVNV-NRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
+P+ A G AV++ +I G ++NV NR G D T LH A + G ++V+ LL
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNR--GDD--TPLHLAASHGHR---DIVQKLLQ 93
Query: 123 ASADVNCVDVYGNKPV 138
AD+N V+ +GN P+
Sbjct: 94 YKADINAVNEHGNVPL 109
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 51 GRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
G RI G + TP+ +AA G +++ +++ K ++N A G LH A G
Sbjct: 62 GARINVMNRG--DDTPLHLAASHGHRDIVQKLLQY-KADIN-AVNEHGNVPLHYACFWGQ 117
Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR 152
+ +V + L++ A V+ + YG PVD ++ L R
Sbjct: 118 D---QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 34/110 (30%)
Query: 63 ERTPIMIAAMFGSVAVLKYVIETGK----------VNVNRACGSD--------------- 97
+ TP+ AA + V+V++Y+++ G V ++ AC
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 98 ------GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI 141
FT LH A A G +E+ KLLL AD + GN P+DL+
Sbjct: 102 NVADLWKFTPLHEAAAKG---KYEICKLLLQHGADPTKKNRDGNTPLDLV 148
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +A A +K ++E+G +VN+ G D + LH V +S E+ LL+
Sbjct: 192 TPLYLACENQQRACVKKLLESG-ADVNQGKGQD--SPLHAVVR---TASEELACLLMDFG 245
Query: 125 ADVNCVDVYGNKPVDLIP 142
AD + G +PV+L+P
Sbjct: 246 ADTQAKNAEGKRPVELVP 263
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 34/110 (30%)
Query: 63 ERTPIMIAAMFGSVAVLKYVIETGK----------VNVNRACGSD--------------- 97
+ TP+ AA + V+V++Y+++ G V ++ AC
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Query: 98 ------GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI 141
FT LH A A G +E+ KLLL AD + GN P+DL+
Sbjct: 104 NVADLWKFTPLHEAAAKG---KYEICKLLLQHGADPTKKNRDGNTPLDLV 150
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
E TP+M AA G +AV++++++ G G + +L C + ++VK+LL
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-----SKGYTDIVKMLL 105
Query: 122 SASADVNCVDVYGNKPV 138
DVN D G P+
Sbjct: 106 DCGVDVNEYDWNGGTPL 122
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 65 TPIMIAAMFGSVAVLKYVIETG-KVNV-NRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
+P+ A G AV++ +I G ++NV NR G D T LH A + G ++V+ LL
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNR--GDD--TPLHLAASHGHR---DIVQKLLQ 88
Query: 123 ASADVNCVDVYGNKPV 138
AD+N V+ +GN P+
Sbjct: 89 YKADINAVNEHGNVPL 104
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 51 GRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
G RI G + TP+ +AA G +++ +++ K ++N A G LH A G
Sbjct: 57 GARINVMNRG--DDTPLHLAASHGHRDIVQKLLQY-KADIN-AVNEHGNVPLHYACFWGQ 112
Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS--RKRA 155
+ +V + L++ A V+ + YG PVD K+PL R+RA
Sbjct: 113 D---QVAEDLVANGALVSICNKYGEMPVD----KAKAPLRELLRERA 152
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ A G + V++ +++ K VN G + LH A N ++VKLLLS
Sbjct: 45 TPLHEACNHGHLKVVELLLQH-KALVN-TTGYQNDSPLHDA---AKNGHVDIVKLLLSYG 99
Query: 125 ADVNCVDVYGNKPVD 139
A N V+++G +PVD
Sbjct: 100 ASRNAVNIFGLRPVD 114
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 56 SKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE 115
+ + E R+P + A+ S A G +++ A DG TALH AV E
Sbjct: 82 AAHLACEHRSPTCLRALLDSAA-------PGTLDLE-ARNYDGLTALHVAVN---TECQE 130
Query: 116 VVKLLLSASADVNCVDV-YGNKPV 138
V+LLL AD++ VD+ G P+
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPL 154
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
+G T LH A N EVVKLLL A ADV D +G D+
Sbjct: 56 NGSTPLHLA---ARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ +A A +K ++E+G +VN+ G D + LH AVA A S E+ LL+
Sbjct: 136 TPLYLACENQQRACVKKLLESG-ADVNQGKGQD--SPLH-AVARTA--SEELACLLMDFG 189
Query: 125 ADVNCVDVYGNKPVDLIP 142
AD + G +PV+L+P
Sbjct: 190 ADTQAKNAEGKRPVELVP 207
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
G T L+ A A G E+V++LL ADVN VD G P+ L
Sbjct: 47 GLTPLYLATAHG---HLEIVEVLLKNGADVNAVDAIGFTPLHL 86
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 95 GSD-GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK 153
GSD G L A AG + V++L++ ADVN D YG P+ L + H
Sbjct: 11 GSDLGKKLLEAARAGQDDE----VRILMANGADVNAKDEYGLTPLYL------ATAHGHL 60
Query: 154 RAIELLLK 161
+E+LLK
Sbjct: 61 EIVEVLLK 68
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 83 IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
+ +G +N R S G TALH A A G EV+KLL+ A DVN D G P+
Sbjct: 185 LNSGHINDVRHAKSGG-TALHVAAAKGYT---EVLKLLIQARYDVNIKDYDGWTPL 236
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP++ A+ FG + +++++E G + +AL A GG ++V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGA--DPHILAKERESALSLASTGGYT---DIVGLLLERD 92
Query: 125 ADVNCVDVYGNKPV 138
D+N D G P+
Sbjct: 93 VDINIYDWNGGTPL 106
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+M AA ++ T V+VN TALH AV G + V+ LLL A
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT---VISLLLEAG 200
Query: 125 ADVNCVDVYGNKPVDL 140
A+V+ ++ G +DL
Sbjct: 201 ANVDAQNIKGESALDL 216
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP++ A+ FG + +++++E G + +AL A GG ++V LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGA--DPHILAKERESALSLASTGGYT---DIVGLLLERD 92
Query: 125 ADVNCVDVYGNKPV 138
D+N D G P+
Sbjct: 93 VDINIYDWNGGTPL 106
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
+P+ +AA+ G ++ +++ G R +D LH A G F+VVK LL ++
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQG---HFQVVKCLLDSN 142
Query: 125 ADVNCVDVYGNKPV 138
A N D+ GN P+
Sbjct: 143 AKPNKKDLSGNTPL 156
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD--GFTALHCAVAGGANSSFEVVKLLL 121
RTP+M+A M G + ++E N ++ D G TAL AV N+ + + LL
Sbjct: 36 RTPLMVACMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAV---KNNRLGIAEKLL 88
Query: 122 SASADVNCVDVYGNKPV 138
S ++VN D G P+
Sbjct: 89 SKGSNVNTKDFSGKTPL 105
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 61 FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
F +TP+M + +FG + +++E G NVN +G T L A G + E+VK L
Sbjct: 99 FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDR-NLEGETPLIVASKYGRS---EIVKKL 153
Query: 121 LSASADVNCVDVYG 134
L AD++ D+ G
Sbjct: 154 LELGADISARDLTG 167
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 251 CVPCPEFRKGACPKGDGCEYAHGVFE--SWLHPAQYRTRLCKD--EIG-CAR-KVCFFAH 304
C P E G C G+ C++AHG E S +Y+T LC+ IG C C F H
Sbjct: 9 CRPFEE--SGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 66
Query: 305 KPEE 308
+E
Sbjct: 67 NADE 70
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 252 VPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAH-KPE 307
V C + +G C KGD CE+ H + + + ++ + C+ K C F H PE
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGE----CSNKECPFLHIDPE 69
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 65 TPIMIAAMFG-------------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGAN 111
TP+MIA+ G + AV+ I G +++ G TALH A A
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGATALHLA---AAY 67
Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPV 138
S + K LL ASAD N D G P+
Sbjct: 68 SRSDAAKRLLEASADANIQDNMGRTPL 94
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 48 FWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVA 107
+G + +K G P+ A +G V + +++ G VN A FT LH A
Sbjct: 78 LQHGADVHAKDKG--GLVPLHNACSYGHYEVTELLLKHGAC-VN-AMDLWQFTPLHEA-- 131
Query: 108 GGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143
+ + EV LLLS AD V+ +G VD+ P
Sbjct: 132 -ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 65 TPIMIAAM--FGSVAVLKYVIETGKV-NVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
+PIM+ A+ + ++ V++ ++ N+N G TAL AV+ G +VVK LL
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG---RVDVVKALL 203
Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 160
+ ADVN D G+ + M + H K LLL
Sbjct: 204 ACEADVNVQDDDGSTAL------MCACEHGHKEIAGLLL 236
>pdb|4GME|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
pdb|4GME|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
Length = 426
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ + +F V K +IE ++ RA T LH AGG + ++ +A
Sbjct: 280 TPLAVGEIFAHVWDAKQLIEEQLIDYLRA------TVLH---AGGITNLKKI-----AAF 325
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLH 150
AD++ V + DL PV M + LH
Sbjct: 326 ADLHHVKTGCHGATDLSPVTMAAALH 351
>pdb|3VCN|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
pdb|3VCN|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
Length = 425
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
TP+ + +F V K +IE ++ RA T LH AGG + ++ +A
Sbjct: 279 TPLAVGEIFAHVWDAKQLIEEQLIDYLRA------TVLH---AGGITNLKKI-----AAF 324
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLH 150
AD++ V + DL PV M + LH
Sbjct: 325 ADLHHVKTGCHGATDLSPVTMAAALH 350
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 260 GACPKGDGCEYAHGVFE---SWLHPAQYRTRLC---KDEIGCAR-KVCFFAHKPEE 308
G C G C++AHG+ E + HP +Y+T LC K + C C F H P E
Sbjct: 22 GRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>pdb|2D9M|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 3 In
Zinc Finger Ccch-Type Domain Containing 7a
Length = 69
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 254 CPEFRKGACPKGDGCEYAHGVFESWLHPAQYR 285
C + G CP+G+ C++AHG E LH + R
Sbjct: 23 CDRYMNGTCPEGNSCKFAHGNAE--LHEWEER 52
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV 132
F + +LK++ + N A G +HC+ G +F V+ +L VDV
Sbjct: 205 FTPIGMLKFLKKVKACNPQYA----GAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDV 260
Query: 133 YG 134
YG
Sbjct: 261 YG 262
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 83 IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
+ T + +NR+ G+ G T +HC+ G +F + +L + VD+YG
Sbjct: 208 VRTVRDYINRSPGA-GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYG 258
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 83 IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
+ T + +NR+ G+ G T +HC+ G +F + +L + VD+YG
Sbjct: 224 VRTVRDYINRSPGA-GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYG 274
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 83 IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
+ T + +NR+ G+ G T +HC+ G +F + +L + VD+YG
Sbjct: 205 VRTVRDYINRSPGA-GPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYG 255
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 65 TPIMIAAMFG-------------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGAN 111
TP+MIA+ G + AV+ I G +++ G TALH A
Sbjct: 13 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLA---ARY 68
Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPV 138
S + K LL ASAD N D G P+
Sbjct: 69 SRSDAAKRLLEASADANIQDNMGRTPL 95
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 65 TPIMIAAMFG-------------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGAN 111
TP+MIA+ G + AV+ I G +++ G TALH A
Sbjct: 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLA---ARY 67
Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPV 138
S + K LL ASAD N D G P+
Sbjct: 68 SRSDAAKRLLEASADANIQDNMGRTPL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,217,659
Number of Sequences: 62578
Number of extensions: 743512
Number of successful extensions: 1761
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1613
Number of HSP's gapped (non-prelim): 155
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)