Query 006236
Match_columns 655
No_of_seqs 470 out of 2476
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.9 8.2E-25 2.8E-29 210.3 15.0 141 18-183 6-146 (169)
2 4gpm_A Engineered protein OR26 99.9 6.3E-24 2.1E-28 204.2 15.2 130 14-168 35-164 (169)
3 3twr_A Tankyrase-2; ankyrin re 99.9 1.5E-23 5.1E-28 196.7 12.3 144 15-182 7-150 (165)
4 3f6q_A Integrin-linked protein 99.9 7.4E-23 2.5E-27 195.1 15.2 144 15-182 4-147 (179)
5 4b93_B Ankyrin repeat domain-c 99.9 3.9E-23 1.3E-27 212.3 13.8 145 14-183 84-228 (269)
6 3v31_A Ankyrin repeat family A 99.9 5.2E-23 1.8E-27 193.4 12.7 143 15-182 2-144 (167)
7 2rfm_A Putative ankyrin repeat 99.9 6.4E-23 2.2E-27 197.5 12.4 147 11-182 30-176 (192)
8 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.6E-22 5.6E-27 191.2 14.9 143 15-182 13-155 (169)
9 1oy3_D Transcription factor in 99.9 2.6E-22 8.7E-27 202.4 16.6 158 14-182 43-267 (282)
10 1awc_B Protein (GA binding pro 99.9 1.4E-22 4.7E-27 188.4 13.2 140 17-182 3-142 (153)
11 3v30_A DNA-binding protein rfx 99.9 1E-22 3.6E-27 192.2 11.8 143 16-182 2-144 (172)
12 1bi7_B P16INK4A, MTS1, multipl 99.9 4.2E-23 1.4E-27 193.0 8.8 138 14-177 10-148 (156)
13 2rfa_A Transient receptor pote 99.9 3.3E-22 1.1E-26 197.2 14.0 146 15-184 2-165 (232)
14 1d9s_A Cyclin-dependent kinase 99.9 1.3E-22 4.6E-27 185.3 9.6 126 14-165 10-136 (136)
15 2jab_A H10-2-G3; HER2, darpin, 99.9 9.9E-22 3.4E-26 179.5 13.9 125 14-163 12-136 (136)
16 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-22 1.7E-26 184.3 11.9 141 16-182 2-142 (156)
17 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-21 5.1E-26 173.1 14.3 126 15-165 1-126 (126)
18 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.4E-22 1.2E-26 186.2 10.6 141 16-182 5-146 (162)
19 2dzn_A Probable 26S proteasome 99.9 2.1E-21 7.1E-26 190.3 15.6 155 14-180 34-215 (228)
20 1s70_B 130 kDa myosin-binding 99.9 2.8E-21 9.7E-26 197.4 16.8 75 97-180 198-272 (299)
21 3v30_A DNA-binding protein rfx 99.9 7.9E-22 2.7E-26 186.2 11.6 138 14-176 34-171 (172)
22 3f6q_A Integrin-linked protein 99.9 4E-21 1.4E-25 183.1 16.4 132 14-170 37-168 (179)
23 3aji_A 26S proteasome non-ATPa 99.9 2.4E-21 8.3E-26 190.5 15.2 145 13-182 37-181 (231)
24 3hra_A Ankyrin repeat family p 99.9 1.8E-21 6.2E-26 187.4 13.7 143 15-181 4-148 (201)
25 1ikn_D Protein (I-kappa-B-alph 99.9 1.9E-21 6.5E-26 192.9 13.8 145 14-183 43-194 (236)
26 2vge_A RELA-associated inhibit 99.9 1.2E-21 4.1E-26 196.4 12.3 144 14-180 19-163 (229)
27 1yyh_A HN1;, notch 1, ankyrin 99.9 1.6E-21 5.3E-26 196.4 13.0 142 13-178 54-195 (253)
28 3hra_A Ankyrin repeat family p 99.9 3.4E-21 1.2E-25 185.5 14.1 147 13-183 36-188 (201)
29 3aji_A 26S proteasome non-ATPa 99.9 4.4E-21 1.5E-25 188.7 14.8 144 15-182 5-148 (231)
30 2f8y_A Notch homolog 1, transl 99.9 4.9E-21 1.7E-25 187.3 14.7 143 14-180 23-165 (223)
31 2f8y_A Notch homolog 1, transl 99.8 5.6E-21 1.9E-25 186.9 14.8 146 14-183 56-201 (223)
32 1yyh_A HN1;, notch 1, ankyrin 99.8 2.7E-21 9.3E-26 194.6 12.9 147 14-184 88-234 (253)
33 1k1a_A B-cell lymphoma 3-encod 99.8 8.7E-21 3E-25 187.1 16.2 157 14-181 44-224 (241)
34 3b7b_A Euchromatic histone-lys 99.8 6.8E-21 2.3E-25 188.1 14.9 156 14-181 42-218 (237)
35 3twr_A Tankyrase-2; ankyrin re 99.8 1.2E-20 4.1E-25 176.8 15.8 125 14-164 40-164 (165)
36 2rfa_A Transient receptor pote 99.8 4.7E-21 1.6E-25 188.9 13.6 149 14-182 35-206 (232)
37 4b93_B Ankyrin repeat domain-c 99.8 1.2E-21 4.1E-26 201.2 9.5 146 14-183 50-195 (269)
38 2xai_A ASB-9, ankyrin repeat a 99.8 8.6E-21 2.9E-25 192.1 15.7 154 14-181 34-207 (261)
39 2xai_A ASB-9, ankyrin repeat a 99.8 7.7E-21 2.6E-25 192.4 14.3 143 15-183 2-144 (261)
40 1ihb_A P18-INK4C(INK6), cyclin 99.8 7.3E-21 2.5E-25 177.2 12.4 126 14-165 36-162 (162)
41 3c5r_A BARD-1, BRCA1-associate 99.8 6.5E-21 2.2E-25 173.8 11.5 126 14-164 8-133 (137)
42 1s70_B 130 kDa myosin-binding 99.8 6.9E-21 2.4E-25 194.6 12.9 151 14-183 38-242 (299)
43 2y1l_E Darpin-8.4; hydrolase-i 99.8 2.1E-20 7.3E-25 176.6 15.2 125 14-163 45-169 (169)
44 4hbd_A KN motif and ankyrin re 99.8 5.1E-21 1.7E-25 196.5 11.1 147 12-183 107-260 (276)
45 3t8k_A Uncharacterized protein 99.8 2.1E-21 7.3E-26 189.2 7.8 150 16-183 6-164 (186)
46 2etb_A Transient receptor pote 99.8 2.2E-21 7.4E-26 194.8 7.9 159 13-183 40-231 (256)
47 1sw6_A Regulatory protein SWI6 99.8 4.4E-21 1.5E-25 201.7 10.6 145 13-181 128-324 (327)
48 1oy3_D Transcription factor in 99.8 7.3E-21 2.5E-25 191.7 11.3 146 13-183 6-202 (282)
49 2etb_A Transient receptor pote 99.8 4.1E-21 1.4E-25 192.8 9.2 148 16-182 2-181 (256)
50 1ycs_B 53BP2, P53BP2; ankyrin 99.8 3.3E-21 1.1E-25 193.1 8.5 139 15-179 4-143 (239)
51 1ikn_D Protein (I-kappa-B-alph 99.8 4.4E-20 1.5E-24 183.0 16.5 147 14-179 76-225 (236)
52 3ehr_A Osteoclast-stimulating 99.8 5.6E-21 1.9E-25 188.3 9.9 134 15-173 72-206 (222)
53 3utm_A Tankyrase-1; tankyrase, 99.8 1.6E-20 5.6E-25 194.5 13.4 142 15-180 23-164 (351)
54 2dzn_A Probable 26S proteasome 99.8 3E-20 1E-24 182.0 14.5 141 16-181 2-148 (228)
55 3d9h_A CDNA FLJ77766, highly s 99.8 4.4E-20 1.5E-24 189.9 16.3 153 14-180 90-262 (285)
56 3b7b_A Euchromatic histone-lys 99.8 3.2E-20 1.1E-24 183.2 14.5 143 14-181 9-152 (237)
57 1ycs_B 53BP2, P53BP2; ankyrin 99.8 9.7E-21 3.3E-25 189.7 10.9 139 14-175 35-174 (239)
58 3d9h_A CDNA FLJ77766, highly s 99.8 2.3E-20 7.8E-25 192.1 13.8 144 14-183 57-200 (285)
59 1k1a_A B-cell lymphoma 3-encod 99.8 3.6E-20 1.2E-24 182.7 14.3 146 13-182 6-159 (241)
60 1awc_B Protein (GA binding pro 99.8 4.5E-20 1.5E-24 171.4 14.1 121 14-159 32-152 (153)
61 1n11_A Ankyrin; clathrin, BAND 99.8 2.3E-20 7.9E-25 201.7 13.7 156 15-182 211-386 (437)
62 3v31_A Ankyrin repeat family A 99.8 2.5E-20 8.5E-25 175.0 11.9 129 14-167 34-162 (167)
63 3aaa_C Myotrophin, protein V-1 99.8 3.8E-20 1.3E-24 165.8 11.9 110 15-143 6-115 (123)
64 2rfm_A Putative ankyrin repeat 99.8 4.8E-20 1.6E-24 177.3 13.3 125 14-163 66-190 (192)
65 3utm_A Tankyrase-1; tankyrase, 99.8 6.5E-20 2.2E-24 190.0 15.1 99 14-131 56-154 (351)
66 4g8k_A 2-5A-dependent ribonucl 99.8 5.5E-20 1.9E-24 192.2 14.3 140 14-168 166-329 (337)
67 3jxi_A Vanilloid receptor-rela 99.8 8E-21 2.7E-25 190.8 7.6 156 14-183 44-235 (260)
68 3c5r_A BARD-1, BRCA1-associate 99.8 5.2E-20 1.8E-24 167.7 12.0 111 60-181 7-117 (137)
69 1wdy_A 2-5A-dependent ribonucl 99.8 5.8E-20 2E-24 184.4 13.3 143 15-181 4-156 (285)
70 1bd8_A P19INK4D CDK4/6 inhibit 99.8 7.4E-20 2.5E-24 169.6 13.0 122 14-162 34-155 (156)
71 3ljn_A Hypothetical protein; a 99.8 3E-20 1E-24 196.3 11.5 138 14-178 18-178 (364)
72 3ljn_A Hypothetical protein; a 99.8 2.7E-20 9.3E-25 196.6 11.1 158 14-183 51-254 (364)
73 2pnn_A Transient receptor pote 99.8 2.6E-20 8.8E-25 189.0 9.9 156 14-183 52-243 (273)
74 1wdy_A 2-5A-dependent ribonucl 99.8 1.6E-19 5.5E-24 181.2 15.2 133 14-170 146-283 (285)
75 2pnn_A Transient receptor pote 99.8 2.4E-20 8.3E-25 189.2 8.7 151 13-183 10-194 (273)
76 2fo1_E LIN-12 protein; beta-ba 99.8 7.1E-20 2.4E-24 195.7 12.7 159 13-182 163-355 (373)
77 3t8k_A Uncharacterized protein 99.8 1E-20 3.6E-25 184.3 5.5 135 15-170 37-184 (186)
78 3jxi_A Vanilloid receptor-rela 99.8 2.1E-20 7.2E-25 187.7 7.2 149 14-182 3-185 (260)
79 3eu9_A Huntingtin-interacting 99.8 2.6E-19 8.7E-24 175.5 14.4 144 14-181 7-150 (240)
80 1n11_A Ankyrin; clathrin, BAND 99.8 1.5E-19 5.2E-24 195.3 13.5 145 14-183 12-156 (437)
81 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-19 5.3E-24 154.4 10.7 93 62-165 1-93 (93)
82 4g8k_A 2-5A-dependent ribonucl 99.8 2.3E-19 7.9E-24 187.5 13.9 140 15-178 24-207 (337)
83 1d9s_A Cyclin-dependent kinase 99.8 4.6E-20 1.6E-24 168.4 7.4 111 60-182 9-120 (136)
84 2b0o_E UPLC1; arfgap, structur 99.8 1.5E-19 5E-24 189.1 11.7 142 16-182 151-295 (301)
85 3lvq_E ARF-GAP with SH3 domain 99.8 2.4E-19 8.3E-24 199.5 14.1 134 17-169 133-269 (497)
86 3kea_A K1L; tropism, ANK repea 99.8 6.6E-20 2.2E-24 188.9 8.8 150 14-176 29-197 (285)
87 3aaa_C Myotrophin, protein V-1 99.8 1.9E-19 6.5E-24 161.3 9.7 110 60-180 4-113 (123)
88 3deo_A Signal recognition part 99.8 1.5E-19 5.1E-24 173.5 9.2 129 15-162 43-181 (183)
89 1dcq_A PYK2-associated protein 99.8 5.8E-19 2E-23 182.3 13.9 132 17-167 131-265 (278)
90 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-19 6.2E-24 159.3 8.4 107 60-177 6-112 (115)
91 3eu9_A Huntingtin-interacting 99.8 4.9E-19 1.7E-23 173.5 12.1 142 14-178 40-182 (240)
92 2fo1_E LIN-12 protein; beta-ba 99.8 2.5E-19 8.5E-24 191.5 8.7 146 14-183 123-289 (373)
93 3ui2_A Signal recognition part 99.8 7.2E-19 2.5E-23 177.2 11.0 134 15-167 44-187 (244)
94 2jab_A H10-2-G3; HER2, darpin, 99.8 6.1E-19 2.1E-23 160.9 8.5 112 60-182 11-122 (136)
95 3jue_A Arfgap with coiled-coil 99.8 1.1E-18 3.9E-23 188.0 11.6 127 16-165 199-326 (368)
96 2vge_A RELA-associated inhibit 99.8 1.8E-18 6.2E-23 173.2 12.0 124 36-180 4-128 (229)
97 4hbd_A KN motif and ankyrin re 99.8 1.2E-18 4.2E-23 178.7 10.6 125 14-163 143-273 (276)
98 3kea_A K1L; tropism, ANK repea 99.7 9.6E-19 3.3E-23 180.1 8.4 130 16-171 95-226 (285)
99 1n0r_A 4ANK, 4 ankyrin repeats 99.7 3E-18 1E-22 151.7 10.1 109 62-181 1-109 (126)
100 3ehr_A Osteoclast-stimulating 99.7 2.5E-18 8.7E-23 169.2 7.5 112 60-182 70-182 (222)
101 1bi7_B P16INK4A, MTS1, multipl 99.7 2E-18 6.8E-23 161.2 5.6 111 60-182 9-120 (156)
102 3deo_A Signal recognition part 99.7 2.1E-18 7.2E-23 165.5 5.2 111 60-182 41-152 (183)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.7 6.2E-17 2.1E-21 138.1 12.2 93 15-126 1-93 (93)
104 2l6b_A NR1C; ankyrin, consensu 99.7 1.8E-17 6.3E-22 146.3 7.9 106 14-138 7-112 (115)
105 1sw6_A Regulatory protein SWI6 99.7 3.5E-18 1.2E-22 179.5 3.1 144 20-180 100-265 (327)
106 3ui2_A Signal recognition part 99.7 1.7E-17 5.7E-22 167.2 7.2 110 60-181 42-152 (244)
107 2zgd_A 3 repeat synthetic anky 99.7 1.3E-16 4.5E-21 140.9 8.7 92 57-159 18-109 (110)
108 2b0o_E UPLC1; arfgap, structur 99.6 1.5E-15 5E-20 158.7 9.3 105 14-143 188-295 (301)
109 3jue_A Arfgap with coiled-coil 99.6 1.2E-15 4.1E-20 164.4 7.9 112 61-183 197-311 (368)
110 2aja_A Ankyrin repeat family p 99.6 2.8E-16 9.5E-21 169.8 0.3 127 15-164 91-223 (376)
111 1dcq_A PYK2-associated protein 99.5 7.6E-15 2.6E-19 151.4 9.5 111 63-183 130-248 (278)
112 3lvq_E ARF-GAP with SH3 domain 99.5 8.9E-15 3.1E-19 162.7 9.7 111 63-183 132-250 (497)
113 2zgd_A 3 repeat synthetic anky 99.5 5.2E-14 1.8E-18 124.1 11.3 92 10-120 18-109 (110)
114 2aja_A Ankyrin repeat family p 99.5 1.1E-15 3.8E-20 165.0 -3.5 127 15-171 127-256 (376)
115 1m9o_A Tristetraproline; Cys3H 99.0 1.8E-10 6.3E-15 96.5 3.1 61 247-308 8-76 (77)
116 3d2q_A Muscleblind-like protei 98.6 5.4E-09 1.8E-13 86.3 0.4 61 251-311 6-69 (70)
117 2e5s_A Otthump00000018578; ZF- 98.1 2.8E-07 9.5E-12 80.9 -1.6 62 250-311 19-83 (98)
118 2cqe_A KIAA1064 protein; CCCH 98.0 3.6E-06 1.2E-10 73.9 3.9 49 248-308 10-62 (98)
119 2d9n_A Cleavage and polyadenyl 97.9 7.8E-06 2.7E-10 68.5 3.6 57 247-310 6-65 (77)
120 2d9m_A Zinc finger CCCH-type d 97.8 2.4E-06 8.2E-11 69.6 -0.8 27 285-311 19-48 (69)
121 2rhk_C Cleavage and polyadenyl 97.6 1.6E-05 5.4E-10 65.8 1.5 55 249-310 14-71 (72)
122 3d2n_A Muscleblind-like protei 97.4 5E-05 1.7E-09 64.5 1.7 66 250-317 8-76 (83)
123 2rpp_A Muscleblind-like protei 97.1 0.00011 3.8E-09 63.2 0.7 62 250-313 16-80 (89)
124 2d9m_A Zinc finger CCCH-type d 97.1 5.9E-05 2E-09 61.4 -1.0 40 252-291 21-63 (69)
125 1m9o_A Tristetraproline; Cys3H 96.9 0.00043 1.5E-08 57.4 3.0 31 282-312 8-42 (77)
126 2d9n_A Cleavage and polyadenyl 90.7 0.084 2.9E-06 43.8 1.6 27 283-309 7-36 (77)
127 2cqe_A KIAA1064 protein; CCCH 89.6 0.17 5.7E-06 44.0 2.6 23 283-305 10-35 (98)
128 2rhk_C Cleavage and polyadenyl 88.7 0.16 5.5E-06 41.6 1.7 29 280-308 10-41 (72)
129 3d2q_A Muscleblind-like protei 88.4 0.14 4.6E-06 41.7 1.1 26 285-310 5-34 (70)
130 2lhn_A Nuclear polyadenylated 85.3 0.17 5.9E-06 42.4 0.0 22 286-307 52-73 (80)
131 2fc6_A Nuclear, target of EGR1 83.6 0.36 1.2E-05 36.5 1.2 24 284-307 18-45 (50)
132 2e5s_A Otthump00000018578; ZF- 83.3 0.3 1E-05 42.5 0.7 28 283-310 17-48 (98)
133 3d2n_A Muscleblind-like protei 82.5 0.65 2.2E-05 39.1 2.5 26 284-309 7-36 (83)
134 2lhn_A Nuclear polyadenylated 83.1 0.26 9E-06 41.3 0.0 37 262-309 18-54 (80)
135 2rpp_A Muscleblind-like protei 70.3 1.7 5.7E-05 37.1 1.7 26 284-309 15-44 (89)
136 2fc6_A Nuclear, target of EGR1 57.8 2.5 8.7E-05 32.0 0.4 26 249-274 18-44 (50)
137 3u1l_A PRE-mRNA-splicing facto 44.9 4.2 0.00014 40.7 -0.2 21 253-273 72-92 (240)
138 3v33_A Ribonuclease ZC3H12A; r 32.7 9.3 0.00032 37.9 0.0 23 285-307 191-214 (223)
139 3u9g_A Zinc finger CCCH-type a 28.0 38 0.0013 33.5 3.5 43 250-308 150-199 (229)
140 3u1l_A PRE-mRNA-splicing facto 23.5 17 0.00057 36.4 -0.1 19 287-305 71-92 (240)
141 1rpb_A Tricyclic peptide RP 71 21.1 41 0.0014 21.4 1.4 18 287-304 5-23 (26)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.92 E-value=8.2e-25 Score=210.33 Aligned_cols=141 Identities=33% Similarity=0.433 Sum_probs=132.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236 18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97 (655)
Q Consensus 18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~ 97 (655)
..|+.||..|+.+.|+.||+ .|+|||.++ .+|+||||+|+..++.+++++|++.| +|++.+ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d-------------~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~-d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNASD-------------SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAK-DSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-CTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhh-ccC
Confidence 57999999999999998886 899999985 89999999999999999999999999 999998 999
Q ss_pred CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236 98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV 177 (655)
Q Consensus 98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl 177 (655)
|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+. .++.+++++||++|++++.+|.+|.||+
T Consensus 70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~------~g~~~~v~~Ll~~gad~~~~d~~G~TpL 140 (169)
T 4gpm_A 70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAE------NGHKEVVKLLISKGADVNTSDSDGRTPL 140 (169)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 9999999999999 999999999999999999999999999997 8999999999999999999999999998
Q ss_pred cccccc
Q 006236 178 PQLSKD 183 (655)
Q Consensus 178 ~~l~~~ 183 (655)
..+...
T Consensus 141 ~~A~~~ 146 (169)
T 4gpm_A 141 DLAREH 146 (169)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 665443
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.91 E-value=6.3e-24 Score=204.15 Aligned_cols=130 Identities=36% Similarity=0.440 Sum_probs=118.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+|+.|+..+..+.++.+|. .|++++.++ .+|+||||+|+..|+.+++++||+.| +|+|.+
T Consensus 35 ~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d-------------~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~ 99 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKD-------------SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAK 99 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhc-------------cCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence 568999999999999998887776 899999985 89999999999999999999999999 999999
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 168 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~ 168 (655)
|.+|+||||+|+..|+ .++|++|+++|+|++.+|.+|+||||+|+. .++.+++++|+++||+++.
T Consensus 100 -d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 100 -DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLARE------HGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHTC------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999973
No 3
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=1.5e-23 Score=196.75 Aligned_cols=144 Identities=23% Similarity=0.369 Sum_probs=134.4
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
++.++|+.|+..|+.+.++.+|...+.+++.. +..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 71 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAK- 71 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCcc-
Confidence 45799999999999999999998777777766 478999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|.+|.
T Consensus 72 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~ 142 (165)
T 3twr_A 72 DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAA------KGKYEICKLLLQHGADPTKKNRDGN 142 (165)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999999999999
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+|+..+..
T Consensus 143 t~l~~a~~ 150 (165)
T 3twr_A 143 TPLDLVKD 150 (165)
T ss_dssp CTGGGSCT
T ss_pred ChhHhHhc
Confidence 99877543
No 4
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=7.4e-23 Score=195.11 Aligned_cols=144 Identities=20% Similarity=0.242 Sum_probs=133.6
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|+.|+..|+.+.++.+|...+.+++..+ ..|+||||+|+..|+.+++++|++.| ++++..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 68 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-------------DHGFSPLHWACREGRSAVVEMLIMRG-ARINVM- 68 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCc-
Confidence 356889999999999999999997788898874 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|..|.
T Consensus 69 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~ 139 (179)
T 3f6q_A 69 NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACF------WGQDQVAEDLVANGALVSICNKYGE 139 (179)
T ss_dssp CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCcchhccCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999999999999
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+|+..+..
T Consensus 140 tpl~~A~~ 147 (179)
T 3f6q_A 140 MPVDKAKA 147 (179)
T ss_dssp CGGGGSCH
T ss_pred CcHHHHHH
Confidence 99866543
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=212.31 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=130.5
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
.+|.|+||.||..|+.+.++.||. .|++++..+ .+|.||||+|+..++.+++++|++.| +++|..
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~ 148 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLK-HGANAGARN-------------ADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKK 148 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccC-------------CCCCCccccccccChHHHHHHHHHCC-CCCCCC
Confidence 457788888888888777666654 788887764 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
|..|.||||+|+..|+ .++|++||++|+|+|.+|..|.||||+|+. .++.++|++||++|+|++.+|.+|
T Consensus 149 -d~~g~TpL~~A~~~g~---~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~------~g~~~~v~~Ll~~Gad~~~~d~~G 218 (269)
T 4b93_B 149 -DLSGNTPLIYACSGGH---HELVALLLQHGASINASNNKGNTALHEAVI------EKHVFVVELLLLHGASVQVLNKRQ 218 (269)
T ss_dssp -CTTCCCHHHHHHHTTC---GGGHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred -CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCccccCCCcHHHHHHH------cCCHHHHHHHHHCCCCCCCcCCCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999999999999
Q ss_pred CCCccccccc
Q 006236 174 NIPVPQLSKD 183 (655)
Q Consensus 174 ~tpl~~l~~~ 183 (655)
.||+..+...
T Consensus 219 ~TpL~~A~~~ 228 (269)
T 4b93_B 219 RTAVDCAEQN 228 (269)
T ss_dssp CCSGGGSCTT
T ss_pred CCHHHHHHhC
Confidence 9999776543
No 6
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.89 E-value=5.2e-23 Score=193.39 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=134.0
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.|.|+||.||..|+.+.++.+|+ .|.++|..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHTD-------------EEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLL- 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCCC-------------CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCc-
Confidence 46799999999999999998887 688999884 89999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+. .++.+++++|+++|++++..+..|.
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~ 136 (167)
T 3v31_A 66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVH------GNHVKCVKMLLESGADPTIETDSGY 136 (167)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999999999999
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+|+..+..
T Consensus 137 t~l~~A~~ 144 (167)
T 3v31_A 137 NSMDLAVA 144 (167)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99865543
No 7
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.88 E-value=6.4e-23 Score=197.45 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=136.4
Q ss_pred ccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236 11 GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV 90 (655)
Q Consensus 11 ~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv 90 (655)
..+..|.|+||.|+..|+.+.++.+++ .|++++..+ ..|.||||+|+..|+.+++++|++.| +++
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~ 94 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKD-------------IEGSTALIWAVKNNRLGIAEKLLSKG-SNV 94 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHT-CCT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-hcccccccc-------------ccCccHHHHHHHcCCHHHHHHHHHCC-CCC
Confidence 344678999999999999999988887 789998874 88999999999999999999999999 999
Q ss_pred ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236 91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE 170 (655)
Q Consensus 91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d 170 (655)
+.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|
T Consensus 95 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~ 164 (192)
T 2rfm_A 95 NTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASK------YGRSEIVKKLLELGADISARD 164 (192)
T ss_dssp TCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCTTCBC
T ss_pred CCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCcC
Confidence 998 9999999999999999 999999999999999999999999999997 899999999999999999999
Q ss_pred ccCCCCcccccc
Q 006236 171 ELVNIPVPQLSK 182 (655)
Q Consensus 171 ~~g~tpl~~l~~ 182 (655)
..|.+|+..+..
T Consensus 165 ~~g~t~l~~A~~ 176 (192)
T 2rfm_A 165 LTGLTAEASARI 176 (192)
T ss_dssp TTSCBHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999999865543
No 8
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.88 E-value=1.6e-22 Score=191.20 Aligned_cols=143 Identities=24% Similarity=0.387 Sum_probs=133.2
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|++||..|+.+.++.+|+ .|+++|..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 76 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMA-NGADVNAED-------------ASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAV- 76 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred cccchHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence 34688999999999999988887 899999874 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++..|.+|.||||+|+. .++.+++++|+++|++++.+|..|.
T Consensus 77 ~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~ 147 (169)
T 2y1l_E 77 DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAM------FGHLEIVEVLLKNGADVNAQDKFGK 147 (169)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999999999999
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+++..+..
T Consensus 148 t~l~~A~~ 155 (169)
T 2y1l_E 148 TAFDISID 155 (169)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99865543
No 9
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.88 E-value=2.6e-22 Score=202.45 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=126.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cccccc----------------------------------
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FWYGRR---------------------------------- 53 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw~g~~---------------------------------- 53 (655)
..|.|+||.|+..|+.+.++.||+ +|++++..+ +.+...
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 121 (282)
T 1oy3_D 43 DLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121 (282)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence 568899999999999988887776 899998776 111110
Q ss_pred ---------------------------cCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 006236 54 ---------------------------IGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAV 106 (655)
Q Consensus 54 ---------------------------~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa 106 (655)
...+..+..|.||||+|+..|+.+++++|+++| ++++...+..|.||||+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~ 200 (282)
T 1oy3_D 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAV 200 (282)
T ss_dssp ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHH
T ss_pred chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHH
Confidence 123455788999999999999999999999999 9999883355999999999
Q ss_pred HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 107 AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 107 ~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
..|+ .++|++||++|++++.+|..|.||||+|+. .++.+++++|+++|++++.++.+|.+|+.....
T Consensus 201 ~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 201 EAQA---ASVLELLLKAGADPTARMYGGRTPLGSALL------RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp HTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------SSCHHHHHHHHHTTCCCCCCC------------
T ss_pred HcCC---HHHHHHHHHcCCCCcccccCCCCHHHHHHH------cCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 9999 999999999999999999999999999987 899999999999999999999999999865543
No 10
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.88 E-value=1.4e-22 Score=188.37 Aligned_cols=140 Identities=20% Similarity=0.310 Sum_probs=130.0
Q ss_pred chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236 17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS 96 (655)
Q Consensus 17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~ 96 (655)
.++|+.|+..|+.+.++.+++ .|.+++. +..|.||||+|+..|+.+++++|++.| ++++.. +.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~ 65 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDAR-TK 65 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CT
T ss_pred cHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC-CC
Confidence 578999999999999998887 7887763 478999999999999999999999999 999998 99
Q ss_pred CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP 176 (655)
Q Consensus 97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp 176 (655)
.|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++..|..|.+|
T Consensus 66 ~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 66 VDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATE------HNHQEVVELLIKYGADVHTQSKFCKTA 136 (153)
T ss_dssp TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 99999999999999 999999999999999999999999999997 899999999999999999999999999
Q ss_pred cccccc
Q 006236 177 VPQLSK 182 (655)
Q Consensus 177 l~~l~~ 182 (655)
+..+..
T Consensus 137 l~~A~~ 142 (153)
T 1awc_B 137 FDISID 142 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865543
No 11
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.88 E-value=1e-22 Score=192.24 Aligned_cols=143 Identities=22% Similarity=0.344 Sum_probs=130.5
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG 95 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d 95 (655)
+.++|+.||..|+.+.++.+|...+..++.. |..|+||||+|+..|+.+++++|++.| ++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEWG-ADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhh-c
Confidence 3578999999999999999998544447776 488999999999999999999999999 999998 9
Q ss_pred CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236 96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175 (655)
Q Consensus 96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t 175 (655)
..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|..|.+
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t 137 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVR------GNHVKCVEALLARGADLTTEADSGYT 137 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCC
Confidence 999999999999999 999999999999999999999999999997 89999999999999999999999999
Q ss_pred Ccccccc
Q 006236 176 PVPQLSK 182 (655)
Q Consensus 176 pl~~l~~ 182 (655)
|+..+..
T Consensus 138 ~l~~A~~ 144 (172)
T 3v30_A 138 PMDLAVA 144 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9865543
No 12
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=4.2e-23 Score=193.03 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=117.3
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.|+||.|+..|+.+.++.+|. .|+++|..+ ..|+||||+|+ .|+.+++++|++.| +++|..
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~ 73 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLE-AGANPNAPN-------------SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCA 73 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCC-------------SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCC
T ss_pred ccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCc
Confidence 567899999999999999988886 799999885 89999999986 99999999999999 999998
Q ss_pred cCCCCCh-HHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 94 CGSDGFT-ALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 94 ~d~~G~T-pLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
+..|.| |||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++..+..
T Consensus 74 -d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 74 -DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEE------LGHRDVARYLRAAAGGTRGSNHA 143 (156)
T ss_dssp -CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHH------HTCHHHHHHHSSCC---------
T ss_pred -CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------hCHHHHHHHHHHcCCCCCccCcC
Confidence 999999 9999999999 999999999999999999999999999997 89999999999999999999988
Q ss_pred CCCCc
Q 006236 173 VNIPV 177 (655)
Q Consensus 173 g~tpl 177 (655)
|.++.
T Consensus 144 g~t~~ 148 (156)
T 1bi7_B 144 RIDAA 148 (156)
T ss_dssp -----
T ss_pred cCccc
Confidence 88774
No 13
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.87 E-value=3.3e-22 Score=197.17 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=133.8
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc----
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV---- 90 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv---- 90 (655)
.|.|+||.|+..|+.+.++.+|...|+++|..+ ..|+||||+|+..|+.+++++|++.| +++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~ 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRG-------------AMGETALHIAALYDNLEAAMVLMEAA-PELVFEP 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-chhcccc
Confidence 478999999999999999999986699999985 89999999999999999999999999 887
Q ss_pred -ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-------------CCCCccchhhhccCCCCcChHHHH
Q 006236 91 -NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-------------YGNKPVDLIPVAMKSPLHSRKRAI 156 (655)
Q Consensus 91 -N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-------------~G~TPLhlAa~~~~~~~~g~~eiv 156 (655)
+.. +..|.||||+|+..|+ .+++++|+++|++++..+. .|.||||+|+. .++.+++
T Consensus 68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~v 137 (232)
T 2rfa_A 68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC------VGSEEIV 137 (232)
T ss_dssp CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH------HTCHHHH
T ss_pred cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH------cCCHHHH
Confidence 445 7799999999999999 9999999999999998876 79999999997 8999999
Q ss_pred HHHHhCCCCCCcccccCCCCcccccccC
Q 006236 157 ELLLKGDHTIFEEEELVNIPVPQLSKDG 184 (655)
Q Consensus 157 elLL~~GAdin~~d~~g~tpl~~l~~~~ 184 (655)
++|+++|++++..|.+|.+|+..+...+
T Consensus 138 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~~ 165 (232)
T 2rfa_A 138 RLLIEHGADIRAQDSLGNTVLHILILQP 165 (232)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHTCS
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999999997665443
No 14
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=1.3e-22 Score=185.30 Aligned_cols=126 Identities=22% Similarity=0.296 Sum_probs=119.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.|+||.|+..|+.+.++.+|+ .|+++|..+ ..|+||||+|+. |+.+++++|+++| +++|..
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~ 73 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLE-AGADPNALN-------------RFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCA 73 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCC
T ss_pred CCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcC-------------CCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCc
Confidence 468899999999999999888886 799999884 899999999999 9999999999999 999998
Q ss_pred cCCC-CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236 94 CGSD-GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 94 ~d~~-G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd 165 (655)
+.. |.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|+|
T Consensus 74 -~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 74 -DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEE------QGHRDIARYLHAATGD 136 (136)
T ss_dssp -BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHH------HTCHHHHHHHHHHHCC
T ss_pred -CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHcCCC
Confidence 888 9999999999999 999999999999999999999999999997 8999999999999986
No 15
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=9.9e-22 Score=179.52 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=117.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++|++||..|+.+.++.+|. .|+++|..+ ..|.||||+|+..|+.+++++|++.| +++|..
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 76 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMA-NGADVNAKD-------------EYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAV 76 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred ccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcC
Confidence 346799999999999999988887 799999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD 163 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G 163 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|+. .++.+++++|+++|
T Consensus 77 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~------~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 77 -DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIG------NGNEDLAEILQKLN 136 (136)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHC-
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHH------CCCHHHHHHHHHcC
Confidence 8999999999999999 999999999999999999999999999997 89999999999886
No 16
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=4.9e-22 Score=184.33 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=131.3
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG 95 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d 95 (655)
+.++|+.|+..|+.+.++.+|...+.++|..+ ..|.||||+ |..|+.+++++|++.| ++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-------------RFGKTALQV-MMFGSTAIALELLKQG-ASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-------------TTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-------------CCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCc-C
Confidence 45899999999999999999987566888874 889999999 9999999999999999 999998 9
Q ss_pred CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236 96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175 (655)
Q Consensus 96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t 175 (655)
..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++ ++++..|.+|.+
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~-~~~~~~~~~g~t 135 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQ------EGHTAVVSFLAAE-SDLHRRDARGLT 135 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------HTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------hChHHHHHHHHhc-cCCCCcCCCCCC
Confidence 999999999999999 999999999999999999999999999997 8999999999999 999999999999
Q ss_pred Ccccccc
Q 006236 176 PVPQLSK 182 (655)
Q Consensus 176 pl~~l~~ 182 (655)
|+..+..
T Consensus 136 ~l~~A~~ 142 (156)
T 1bd8_A 136 PLELALQ 142 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9865543
No 17
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.5e-21 Score=173.06 Aligned_cols=126 Identities=35% Similarity=0.489 Sum_probs=119.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
+|.|+|+.|+..|+.+.++.++. .|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~- 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKD-------------KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK- 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcC-------------CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCccc-
Confidence 47899999999999999988886 799998874 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd 165 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|+|
T Consensus 65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAAR------NGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------cCcHHHHHHHHHcCCC
Confidence 8999999999999999 999999999999999999999999999997 8999999999999986
No 18
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.87 E-value=3.4e-22 Score=186.22 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=130.8
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG 95 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d 95 (655)
..++|+.|+..|+.+.++.+|+ .|+++|..+ ..|+||||+|+. |+.+++++|++.| ++++.. +
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~-~ 67 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQ-NNVNVNAQN-------------GFGRTALQVMKL-GNPEIARRLLLRG-ANPDLK-D 67 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCC-------------TTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCC-C
T ss_pred HhhHHHHHHHcCCHHHHHHHHh-CCCCccccC-------------ccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCC-C
Confidence 4689999999999999998886 899999874 889999999999 9999999999999 999998 9
Q ss_pred CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC-CCcccccCC
Q 006236 96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT-IFEEEELVN 174 (655)
Q Consensus 96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd-in~~d~~g~ 174 (655)
..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|+. .++.+++++|+++|++ ++..+..|.
T Consensus 68 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~~g~ 138 (162)
T 1ihb_A 68 RTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAK------EGHLRVVEFLVKHTASNVGHRNHKGD 138 (162)
T ss_dssp TTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred CCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHccCCCCCCcCCCCC
Confidence 999999999999999 999999999999999999999999999997 8999999999999998 688999999
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+|+..+..
T Consensus 139 t~l~~A~~ 146 (162)
T 1ihb_A 139 TACDLARL 146 (162)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99865543
No 19
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.86 E-value=2.1e-21 Score=190.30 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=108.3
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcC--CCCCC-CC--------------------cc--cccccCCccCCCCCChHHH
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKG--FDVDE-PS--------------------FW--YGRRIGSKKMGFEERTPIM 68 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~G--adIn~-~d--------------------lw--~g~~~~~~~~d~~G~TPLh 68 (655)
..|.|+||.|+..|+.+.++.++. .| .+++. .+ ++ .+...+.+..+..|.||||
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~ 112 (228)
T 2dzn_A 34 QDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHH
Confidence 456677777777777666665554 55 44333 21 00 1111333344577778888
Q ss_pred HHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCC
Q 006236 69 IAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKS 147 (655)
Q Consensus 69 ~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~ 147 (655)
+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|++.| ++++.+|..|+||||+|+.
T Consensus 113 ~A~~~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~---- 183 (228)
T 2dzn_A 113 LAVGKKWFEVSQFLIENG-ASVRIK-DKFNQIPLHRAASVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALA---- 183 (228)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----
T ss_pred HHHHcCCHhHHHHHHHcC-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCcccccCcCCCCCCHHHHHHH----
Confidence 888888888888888777 777777 7778888888888777 78888888777 7777778888888888776
Q ss_pred CCcChHHHHHHHH-hCCCCCCcccccCCCCcccc
Q 006236 148 PLHSRKRAIELLL-KGDHTIFEEEELVNIPVPQL 180 (655)
Q Consensus 148 ~~~g~~eivelLL-~~GAdin~~d~~g~tpl~~l 180 (655)
.++.+++++|+ ++|++++.+|.+|.+|+..+
T Consensus 184 --~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A 215 (228)
T 2dzn_A 184 --EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215 (228)
T ss_dssp --TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred --cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence 67778888877 77888887777777777554
No 20
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.86 E-value=2.8e-21 Score=197.43 Aligned_cols=75 Identities=29% Similarity=0.312 Sum_probs=46.9
Q ss_pred CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236 97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP 176 (655)
Q Consensus 97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp 176 (655)
.|.||||+|+..|+ .++|++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++.+|..|.+|
T Consensus 198 ~g~t~L~~A~~~g~---~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 198 SGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAH------WGKEEACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCCCHHHHHHHCCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHh------cCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34555666666666 666666666666666666666666666665 566666666666666666666666666
Q ss_pred cccc
Q 006236 177 VPQL 180 (655)
Q Consensus 177 l~~l 180 (655)
+..+
T Consensus 269 l~~A 272 (299)
T 1s70_B 269 FDVA 272 (299)
T ss_dssp TTSC
T ss_pred HHHH
Confidence 5444
No 21
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.86 E-value=7.9e-22 Score=186.20 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=123.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|+ .|+++|..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 98 (172)
T 3v30_A 34 ERGFTPLIWASAFGEIETVRFLLE-WGADPHILA-------------KERESALSLASTGGYTDIVGLLLERD-VDINIY 98 (172)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhc-------------ccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCC
Confidence 568899999999999998888775 899999885 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|+++...+..+
T Consensus 99 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~~~~~~~~~~~~ 168 (172)
T 3v30_A 99 -DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVA------LGYRKVQQVIENHILKLFQSNLVP 168 (172)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHHHSCC----
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------hCcHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999988776665
Q ss_pred CCC
Q 006236 174 NIP 176 (655)
Q Consensus 174 ~tp 176 (655)
.+|
T Consensus 169 ~~p 171 (172)
T 3v30_A 169 ADP 171 (172)
T ss_dssp ---
T ss_pred CCC
Confidence 554
No 22
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.86 E-value=4e-21 Score=183.09 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=123.5
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|. .|+++|..+ ..|.||||+|+..|+.+++++|+++| +++|..
T Consensus 37 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 101 (179)
T 3f6q_A 37 DHGFSPLHWACREGRSAVVEMLIM-RGARINVMN-------------RGDDTPLHLAASHGHRDIVQKLLQYK-ADINAV 101 (179)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc
Confidence 468899999999999988877776 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE 170 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d 170 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++..+
T Consensus 102 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 102 -NEHGNVPLHYACFWGQ---DQVAEDLVANGALVSICNKYGEMPVDKAKA------PLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSSBCCTTSCCGGGGSCH------HHHHHHHHHHHHTTCCCSCBC
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcchhccCCCCcHHHHHH------HHHHHHHHHHHHhhcCcccCC
Confidence 9999999999999999 999999999999999999999999999987 899999999999999999644
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.86 E-value=2.4e-21 Score=190.53 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=105.3
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR 92 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~ 92 (655)
+..|.|+|+.|+..|+.+.++.+++ .|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.
T Consensus 37 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~ 101 (231)
T 3aji_A 37 DQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKD-------------DAGWSPLHIAASAGXDEIVKALLVKG-AHVNA 101 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcC-------------CCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCC
Confidence 3568899999999999888877776 788888874 66777777777777777777777776 77776
Q ss_pred ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
. +..|.||||+|+..|+ .+++++|++.|++++..|..|.||||+|+. .++.+++++|+++|++++..|..
T Consensus 102 ~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~ 171 (231)
T 3aji_A 102 V-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAA------KGNLKMVHILLFYKASTNIQDTE 171 (231)
T ss_dssp C-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCCSCCCCTT
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------cCCHHHHHHHHhcCCCccccCCC
Confidence 6 6677777777777776 777777777777777777777777777765 66677777777777777776667
Q ss_pred CCCCcccccc
Q 006236 173 VNIPVPQLSK 182 (655)
Q Consensus 173 g~tpl~~l~~ 182 (655)
|.+|+..+..
T Consensus 172 g~t~L~~A~~ 181 (231)
T 3aji_A 172 GNTPLHLACD 181 (231)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7776644433
No 24
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.86 E-value=1.8e-21 Score=187.37 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=84.5
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|++||..|+.+.++.+|.+.+.++|..+ .+|.||||+|+..|+.+++++|++.| ++++..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 68 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVD-------------TEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQ- 68 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC-
Confidence 345666666666666666666665555666553 55566666666666666666666665 666655
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHH-hCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC-CCCCccccc
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLL-SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD-HTIFEEEEL 172 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL-~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G-Adin~~d~~ 172 (655)
+..|.||||+|+..|+ .+++++|+ ..+++++..|..|.||||+|+. .++.+++++|+++| ++++..|..
T Consensus 69 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~~ 139 (201)
T 3hra_A 69 NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAE------KGHIDNVKLLLEDGREDIDFQNDF 139 (201)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH------TTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCcCCCCCC
Confidence 5556666666666665 66666666 3445566666666666666554 55566666666555 556655556
Q ss_pred CCCCccccc
Q 006236 173 VNIPVPQLS 181 (655)
Q Consensus 173 g~tpl~~l~ 181 (655)
|.+|+..+.
T Consensus 140 g~t~L~~A~ 148 (201)
T 3hra_A 140 GYTALIEAV 148 (201)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 666554333
No 25
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.86 E-value=1.9e-21 Score=192.88 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=130.9
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc----
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN---- 89 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD---- 89 (655)
..|.|+||.|+..|+.+.++.||. .|++++..+ ..|.||||+|+..|+.+++++|++.+ ++
T Consensus 43 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~ 107 (236)
T 1ikn_D 43 NLQQTPLHLAVITNQPEIAEALLG-AGCDPELRD-------------FRGNTPLHLACEQGCLASVGVLTQSC-TTPHLH 107 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHST-TTTSSS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHhcc-cchhHH
Confidence 458899999999999888777765 899999884 88999999999999999999999998 65
Q ss_pred --cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236 90 --VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI 166 (655)
Q Consensus 90 --vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi 166 (655)
++.. +..|.||||+|+..|+ .+++++|+++|++++.+|. .|.||||+|+. .++.+++++|+++|+++
T Consensus 108 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~ 177 (236)
T 1ikn_D 108 SILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVD------LQNPDLVSLLLKCGADV 177 (236)
T ss_dssp CGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH------TTCHHHHHHHHTTTCCS
T ss_pred HHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCC
Confidence 5665 8899999999999999 9999999999999999998 99999999997 89999999999999999
Q ss_pred CcccccCCCCccccccc
Q 006236 167 FEEEELVNIPVPQLSKD 183 (655)
Q Consensus 167 n~~d~~g~tpl~~l~~~ 183 (655)
+..|..|.+|+..+...
T Consensus 178 ~~~~~~g~tpl~~A~~~ 194 (236)
T 1ikn_D 178 NRVTYQGYSPYQLTWGR 194 (236)
T ss_dssp CCCCTTCCCGGGGCTTS
T ss_pred CcccCCCCCHHHHHHcc
Confidence 99999999998666443
No 26
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=196.37 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=130.7
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++|+.|+..|+.+.++.+|. .|+++|..+ ..|+||||+|+..|+.+++++||+.| +|+|..
T Consensus 19 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~ 83 (229)
T 2vge_A 19 LNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPN-------------EEGITALHNAICGANYSIVDFLITAG-ANVNSP 83 (229)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred cchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence 456789999999999999998886 899999884 89999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
|..|.||||+|+..|+ .+++++|+++|++++..| .+|.||||+|+. +..++.+++++|+++|++++..|..
T Consensus 84 -d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a----~~~~~~~~v~~Ll~~ga~~~~~~~~ 155 (229)
T 2vge_A 84 -DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDP----YREGYADCATYLADVEQSMGLMNSG 155 (229)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCT----TSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHH----HhcChHHHHHHHHHcCCCcccccCC
Confidence 9999999999999999 999999999999999997 699999999921 2489999999999999999999888
Q ss_pred CCCCcccc
Q 006236 173 VNIPVPQL 180 (655)
Q Consensus 173 g~tpl~~l 180 (655)
+.+++...
T Consensus 156 ~~~~l~~~ 163 (229)
T 2vge_A 156 AVYALWDY 163 (229)
T ss_dssp EEEESSCB
T ss_pred chHHHHHH
Confidence 87776433
No 27
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.86 E-value=1.6e-21 Score=196.36 Aligned_cols=142 Identities=21% Similarity=0.180 Sum_probs=85.4
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR 92 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~ 92 (655)
+..|.|+||.|+..|+.+.++.||+ .|++++..+ ..|+||||+|+..|+.+++++|++.+..+++.
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~ 119 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLE-ASADANIQD-------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 3568899999999999988887776 899999875 44555555555555555555555554224554
Q ss_pred ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .++.+++++|+++|++++..|..
T Consensus 120 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~ 189 (253)
T 1yyh_A 120 R-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAA------VNNVDAAVVLLKNGANKDMQNNR 189 (253)
T ss_dssp C-CTTCCCHHHHHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTT
T ss_pred c-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCC
Confidence 4 4555555555555555 555555555555555555555555555544 45555555555555555555555
Q ss_pred CCCCcc
Q 006236 173 VNIPVP 178 (655)
Q Consensus 173 g~tpl~ 178 (655)
|.+|+.
T Consensus 190 g~tpL~ 195 (253)
T 1yyh_A 190 EETPLF 195 (253)
T ss_dssp SCCHHH
T ss_pred CCCHHH
Confidence 555543
No 28
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.85 E-value=3.4e-21 Score=185.48 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=133.3
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR 92 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~ 92 (655)
+..|.|+||.|+..|+.+.++.+|+ .|++++..+ ..|.||||+|+..|+.+++++|++.+.++++.
T Consensus 36 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~ 101 (201)
T 3hra_A 36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQN-------------SISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhccCccccc
Confidence 3678999999999999988887776 899999884 88999999999999999999999665489999
Q ss_pred ccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcCh-----HHHHHHHHhCCCCC
Q 006236 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSR-----KRAIELLLKGDHTI 166 (655)
Q Consensus 93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~-----~eivelLL~~GAdi 166 (655)
. +..|.||||+|+..|+ .+++++|++.| ++++.+|..|.||||+|+. .+. .+++++|+++|+++
T Consensus 102 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 102 H-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVG------LREGNQLYQDIVKLLMENGADQ 171 (201)
T ss_dssp C-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH------SSCCSHHHHHHHHHHHHTTCCT
T ss_pred c-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH------hccchhhHHHHHHHHHHCCCCC
Confidence 8 9999999999999999 99999999999 9999999999999999997 444 99999999999999
Q ss_pred CcccccCCCCccccccc
Q 006236 167 FEEEELVNIPVPQLSKD 183 (655)
Q Consensus 167 n~~d~~g~tpl~~l~~~ 183 (655)
+.+|..|.+|+..+...
T Consensus 172 ~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 172 SIKDNSGRTAMDYANQK 188 (201)
T ss_dssp TCCCTTSCCHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHc
Confidence 99999999998665443
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.85 E-value=4.4e-21 Score=188.66 Aligned_cols=144 Identities=22% Similarity=0.339 Sum_probs=122.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|+.||..|+.+.++.+|...+..++.. |..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~- 69 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDK- 69 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC-
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-------------CCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCc-
Confidence 46788888999999999888888666656665 478889999999999999999999988 888887
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+. .++.+++++|+++|++++..+..|.
T Consensus 70 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~g~ 140 (231)
T 3aji_A 70 DDAGWSPLHIAASAGX---DEIVKALLVKGAHVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDAKDHYDA 140 (231)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCH---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 8888999999999888 899999999999999888899999999887 7888899999999999988888888
Q ss_pred CCcccccc
Q 006236 175 IPVPQLSK 182 (655)
Q Consensus 175 tpl~~l~~ 182 (655)
+++..+..
T Consensus 141 t~L~~A~~ 148 (231)
T 3aji_A 141 TAMHRAAA 148 (231)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 88854443
No 30
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.85 E-value=4.9e-21 Score=187.34 Aligned_cols=143 Identities=21% Similarity=0.182 Sum_probs=98.9
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|+ .|++++..+ ..|+||||+|+..|+.+++++|++.+..+++..
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 88 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLLE-ASADANIQD-------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 88 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred CCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 568899999999999998888876 799998875 566666666666666666666666662356655
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .+++++|++.|++++..|..|.||||+|+. .++.+++++|+++|++++..|..|
T Consensus 89 -~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g 158 (223)
T 2f8y_A 89 -MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAA------VNNVDAAVVLLKNGANKDMQNNRE 158 (223)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred -CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCC
Confidence 6666666666666666 666666666666666666666666666665 566666666666666666666666
Q ss_pred CCCcccc
Q 006236 174 NIPVPQL 180 (655)
Q Consensus 174 ~tpl~~l 180 (655)
.+|+..+
T Consensus 159 ~t~L~~A 165 (223)
T 2f8y_A 159 ETPLFLA 165 (223)
T ss_dssp CCHHHHH
T ss_pred cCHHHHH
Confidence 6666433
No 31
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.85 E-value=5.6e-21 Score=186.95 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=134.3
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+|+.|+..++.+.++.++.....+++..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 56 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~ 121 (223)
T 2f8y_A 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-------------HDGTTPLILAARLAVEGMLEDLINSH-ADVNAV 121 (223)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCB
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------CCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCc
Confidence 6788999999999999998888874444788774 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|..|
T Consensus 122 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g 191 (223)
T 2f8y_A 122 -DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR------EGSYETAKVLLDHFANRDITDHMD 191 (223)
T ss_dssp -CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred -CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHH------cCCHHHHHHHHHcCCCCccccccC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999999999999
Q ss_pred CCCccccccc
Q 006236 174 NIPVPQLSKD 183 (655)
Q Consensus 174 ~tpl~~l~~~ 183 (655)
.+|+..+...
T Consensus 192 ~t~l~~A~~~ 201 (223)
T 2f8y_A 192 RLPRDIAQER 201 (223)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHh
Confidence 9998655443
No 32
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.85 E-value=2.7e-21 Score=194.60 Aligned_cols=147 Identities=19% Similarity=0.214 Sum_probs=134.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..++.+.++.+|.....+++..+ ..|.||||+|+..|+.+++++|++.| +++|..
T Consensus 88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 153 (253)
T 1yyh_A 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-------------HDGTTPLILAARLAVEGMLEDLINSH-ADVNAV 153 (253)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-------------TTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCB
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-------------CCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCc
Confidence 6788999999999999988888874444888874 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++.+|..|
T Consensus 154 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g 223 (253)
T 1yyh_A 154 -DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR------EGSYETAKVLLDHFANRDITDHMD 223 (253)
T ss_dssp -CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------CCCHHHHHHHHHcCCCccccccCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999999999999
Q ss_pred CCCcccccccC
Q 006236 174 NIPVPQLSKDG 184 (655)
Q Consensus 174 ~tpl~~l~~~~ 184 (655)
.+|+..+...+
T Consensus 224 ~tpl~~A~~~g 234 (253)
T 1yyh_A 224 RLPRDIAQERM 234 (253)
T ss_dssp CCHHHHHHHTT
T ss_pred CCHHHHHHHcC
Confidence 99986665443
No 33
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.85 E-value=8.7e-21 Score=187.11 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=123.2
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------c--------------c--cc--ccCCccCCCCCChHHHH
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------W--------------Y--GR--RIGSKKMGFEERTPIMI 69 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------w--------------~--g~--~~~~~~~d~~G~TPLh~ 69 (655)
..|.|+|+.|+..|+.+.++.+++ .|++++..+. . . +. ..+....|..|.||||+
T Consensus 44 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~ 122 (241)
T 1k1a_A 44 NLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence 458899999999998888777775 8899887651 0 0 11 11444557788888888
Q ss_pred HHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCC
Q 006236 70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPL 149 (655)
Q Consensus 70 AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~ 149 (655)
|+..|+.+++++|++.| ++++...+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+.
T Consensus 123 A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------ 192 (241)
T 1k1a_A 123 AVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSASG------ 192 (241)
T ss_dssp HHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------
T ss_pred HHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------
Confidence 88888888888888888 88887722778888888888888 888888888888888888888888888876
Q ss_pred cChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 150 HSRKRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 150 ~g~~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
.++.+++++|+++|++++.+|..|.+|+..+.
T Consensus 193 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224 (241)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred cCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 78888888888888888888888888876554
No 34
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.85 E-value=6.8e-21 Score=188.07 Aligned_cols=156 Identities=21% Similarity=0.337 Sum_probs=102.6
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc--------------------ccccc-cCCccCCCCCChHHHHHHH
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF--------------------WYGRR-IGSKKMGFEERTPIMIAAM 72 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl--------------------w~g~~-~~~~~~d~~G~TPLh~AA~ 72 (655)
..|.|+|+.|+..|+.+.++.++. .|++++..+. +.... ...+..+..|.||||+|+.
T Consensus 42 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 120 (237)
T 3b7b_A 42 EDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120 (237)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence 457788888888888877766664 7888777640 00010 2223335566677777777
Q ss_pred cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236 73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR 152 (655)
Q Consensus 73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~ 152 (655)
.|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .++
T Consensus 121 ~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~ 189 (237)
T 3b7b_A 121 YKHVDLVKLLLSKG-SDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAAR------ENR 189 (237)
T ss_dssp TTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH------TTC
T ss_pred cCCHHHHHHHHHCC-CCCCcc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------hCC
Confidence 77777777777666 666666 6666777777776666 667777777777777666667777777665 666
Q ss_pred HHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 153 KRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 153 ~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
.+++++|+++|++++.+|.+|.+|+..+.
T Consensus 190 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 218 (237)
T 3b7b_A 190 YDCVVLFLSRDSDVTLKNKEGETPLQCAS 218 (237)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred HhHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 67777777777777766666666664443
No 35
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.85 E-value=1.2e-20 Score=176.84 Aligned_cols=125 Identities=28% Similarity=0.345 Sum_probs=114.7
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|+ .|+++|..+ ..|+||||+|+..|+.+++++|+++| +++|..
T Consensus 40 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 104 (165)
T 3twr_A 40 GRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKD-------------KGGLVPLHNACSYGHYEVAELLVKHG-AVVNVA 104 (165)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred cCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccC-------------CCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCc
Confidence 456799999999999988877776 899999885 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH 164 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GA 164 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|+ .++.+++++|+++|+
T Consensus 105 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~-------~~~~~i~~~L~~~gA 164 (165)
T 3twr_A 105 -DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVK-------DGDTDIQDLLRGDAA 164 (165)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSC-------TTCHHHHHHHHTC--
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHh-------cCChHHHHHHhhccc
Confidence 9999999999999999 99999999999999999999999999975 488899999999886
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.85 E-value=4.7e-21 Score=188.93 Aligned_cols=149 Identities=20% Similarity=0.215 Sum_probs=128.9
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|. .|+++.... ....|..|.||||+|+..|+.+++++|+++| ++++..
T Consensus 35 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 104 (232)
T 2rfa_A 35 AMGETALHIAALYDNLEAAMVLME-AAPELVFEP--------MTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSAR 104 (232)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCC--------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCchhcccc--------ccccCCCCcCHHHHHHHcCCHHHHHHHHhCC-CCCCcc
Confidence 568999999999999998888776 787763221 1223578999999999999999999999999 999987
Q ss_pred cCC-------------CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHH----
Q 006236 94 CGS-------------DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAI---- 156 (655)
Q Consensus 94 ~d~-------------~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eiv---- 156 (655)
+. .|.||||+|+..|+ .+++++|+++|+|++.+|.+|+||||+|+. .++.+++
T Consensus 105 -~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~------~~~~~~~~~i~ 174 (232)
T 2rfa_A 105 -ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILIL------QPNKTFACQMY 174 (232)
T ss_dssp -CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------CSCHHHHHHHH
T ss_pred -cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCChHHHHHHH
Confidence 44 79999999999999 999999999999999999999999999987 7888877
Q ss_pred HHHHhCCCCC------CcccccCCCCcccccc
Q 006236 157 ELLLKGDHTI------FEEEELVNIPVPQLSK 182 (655)
Q Consensus 157 elLL~~GAdi------n~~d~~g~tpl~~l~~ 182 (655)
++|+++|+++ +.+|..|.+|+..+..
T Consensus 175 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~ 206 (232)
T 2rfa_A 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206 (232)
T ss_dssp HHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHhcCCchhhhhhhccCCCCCCCHHHHHHH
Confidence 9999999998 4788889998865543
No 37
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=201.23 Aligned_cols=146 Identities=22% Similarity=0.300 Sum_probs=115.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++|++++..++...+..+|.+.|++||..+ .+|+||||+||..|+.++|++||+.+ ++++..
T Consensus 50 ~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-------------~~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~ 115 (269)
T 4b93_B 50 PEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-------------QDGSSPLHVAALHGRADLIPLLLKHG-ANAGAR 115 (269)
T ss_dssp -------------------------CCCCTTCCC-------------TTSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCC
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHhcC-CCcCcc
Confidence 3567899999999988877777778999999985 89999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..++ .+++++|++.|+++|.+|..|.||||+|+. .++.+++++||++|++++..+..|
T Consensus 116 -~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~------~g~~~~v~~Ll~~gadvn~~~~~g 185 (269)
T 4b93_B 116 -NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYACS------GGHHELVALLLQHGASINASNNKG 185 (269)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHH------TTCGGGHHHHHHTTCCTTCBCTTS
T ss_pred -CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------CCCHHHHHHHHHCCCCCCccccCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999999999999
Q ss_pred CCCccccccc
Q 006236 174 NIPVPQLSKD 183 (655)
Q Consensus 174 ~tpl~~l~~~ 183 (655)
.+|+..+...
T Consensus 186 ~t~Lh~A~~~ 195 (269)
T 4b93_B 186 NTALHEAVIE 195 (269)
T ss_dssp CBHHHHHHHT
T ss_pred CcHHHHHHHc
Confidence 9999655544
No 38
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=192.06 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=102.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cccc--------------cccCCccCCCCCChHHHHHHHc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FWYG--------------RRIGSKKMGFEERTPIMIAAMF 73 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw~g--------------~~~~~~~~d~~G~TPLh~AA~~ 73 (655)
..|.|+||.|+..|+.+.++.+|+ .|+++|..+ +.+. ...+.. .+.+|.||||+|+..
T Consensus 34 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~ 111 (261)
T 2xai_A 34 ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARR 111 (261)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHc
Confidence 467889999998888887777765 788888775 0000 000111 134466666666666
Q ss_pred CCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236 74 GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK 153 (655)
Q Consensus 74 G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~ 153 (655)
|+.+++++|++.| +++|.. +..|.||||+|+..|+ .+++++|+++|+++|. |..|.||||+|+. .++.
T Consensus 112 ~~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~------~~~~ 179 (261)
T 2xai_A 112 GHVECVNSLIAYG-GNIDHK-ISHLGTPLYLACENQQ---RACVKKLLESGADVNQ-GKGQDSPLHAVAR------TASE 179 (261)
T ss_dssp TCHHHHHHHHHTT-CCTTCC-BTTTBCHHHHHHHTTC---HHHHHHHHHHTCCTTC-CBTTBCHHHHHHH------HTCH
T ss_pred CcHHHHHHHHHcC-CCCCcC-CCCCCCHHHHHHHhCC---HHHHHHHHHcCCCCCC-CCCCCChHHHHHH------cCCH
Confidence 6666666666666 666666 6666677777776666 6777777777776664 6666777777665 6667
Q ss_pred HHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 154 RAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 154 eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
+++++|+++|++++.+|.+|.+|+..+.
T Consensus 180 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 180 ELACLLMDFGADTQAKNAEGKRPVELVP 207 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhcc
Confidence 7777777777777777777777765544
No 39
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=192.43 Aligned_cols=143 Identities=19% Similarity=0.259 Sum_probs=128.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
+|.|+||.||..|+.+.++.+|. .|+++|..+ .+|.||||+|+..|+.+++++|++.| +++|..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~- 65 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIIT-------------ADHVSPLHEACLGGHLSCVKILLKHG-AQVNGV- 65 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC-
Confidence 57899999999999999888887 799999885 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++. +.+|.||||+|+. .++.+++++|+++|++++..|..|.
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~ 135 (261)
T 2xai_A 66 TADWHTPLFNACVSGS---WDCVNLLLQHGASVQP-ESDLASPIHEAAR------RGHVECVNSLIAYGGNIDHKISHLG 135 (261)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSC-SCTTCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCBTTTB
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHH------cCcHHHHHHHHHcCCCCCcCCCCCC
Confidence 8999999999999999 9999999999999985 4569999999987 8899999999999999999999999
Q ss_pred CCccccccc
Q 006236 175 IPVPQLSKD 183 (655)
Q Consensus 175 tpl~~l~~~ 183 (655)
+|+..+...
T Consensus 136 t~L~~A~~~ 144 (261)
T 2xai_A 136 TPLYLACEN 144 (261)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 998655443
No 40
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.84 E-value=7.3e-21 Score=177.20 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=114.6
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+|+.|+. |+.+.++.++. .|++++..+ ..|.||||+|+..|+.+++++|+++| +++|..
T Consensus 36 ~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 99 (162)
T 1ihb_A 36 GFGRTALQVMKL-GNPEIARRLLL-RGANPDLKD-------------RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIE 99 (162)
T ss_dssp TTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred ccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc
Confidence 457888888777 88887777765 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-CcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASAD-VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd 165 (655)
+..|.||||+|+..|+ .+++++|+++|++ ++..|..|.||||+|+. .++.+++++|+++|||
T Consensus 100 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 100 -DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARL------YGRNEVVSLMQANGAG 162 (162)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTC--
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHH------cCCHHHHHHHHHhCCC
Confidence 9999999999999999 9999999999998 69999999999999997 8999999999999986
No 41
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=6.5e-21 Score=173.76 Aligned_cols=126 Identities=28% Similarity=0.369 Sum_probs=109.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|. .|++++..+ ..|+||||+|+..|+.+++++|++.| ++++..
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~ 72 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKD-------------HAGWTPLHEACNHGHLKVVELLLQHK-ALVNTT 72 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCc
Confidence 568899999999999998887776 899998874 88999999999999999999999999 999988
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH 164 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GA 164 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|+. .+..+++++|.+.+.
T Consensus 73 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 73 -GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDD------ESMKSLLLLPEKNES 133 (137)
T ss_dssp -CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCC------HHHHHHHSCC-----
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhh------ccHHHHHhhcccccc
Confidence 8899999999999999 999999999999999999999999999875 777888887776554
No 42
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.84 E-value=6.9e-21 Score=194.58 Aligned_cols=151 Identities=21% Similarity=0.386 Sum_probs=130.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++|+.|+..|+.+.++.+|. .|+++|..+ ..|.||||+||..|+.+++++|+++| +++|..
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~ 102 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLE-RGADINYAN-------------VDGLTALHQACIDDNVDMVKFLVENG-ANINQP 102 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBC-------------TTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred cCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccC-------------CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence 466789999999999999998886 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh------------------------------
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV------------------------------ 143 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~------------------------------ 143 (655)
+..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+.
T Consensus 103 -~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 178 (299)
T 1s70_B 103 -DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178 (299)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH
Confidence 9999999999999999 999999999999999888777666665532
Q ss_pred ------------------------ccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236 144 ------------------------AMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 144 ------------------------~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~ 183 (655)
++.++..++.+++++|+++|++++..|..|.+|+..+...
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~ 242 (299)
T 1s70_B 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242 (299)
T ss_dssp HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc
Confidence 0011236788999999999999999999999998655443
No 43
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.84 E-value=2.1e-20 Score=176.63 Aligned_cols=125 Identities=26% Similarity=0.412 Sum_probs=117.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|. .|++++..+ ..|.||||+|+..|+.+++++|+++| ++++..
T Consensus 45 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~ 109 (169)
T 2y1l_E 45 ASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVD-------------HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNAN 109 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence 468899999999999998887776 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD 163 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G 163 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|++.|
T Consensus 110 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 110 -DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISID------NGNEDLAEILQKLN 169 (169)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHTC-
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------hCCHHHHHHHHHcC
Confidence 9999999999999999 999999999999999999999999999997 89999999999876
No 44
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=196.50 Aligned_cols=147 Identities=24% Similarity=0.246 Sum_probs=133.3
Q ss_pred cccCCchHHHHHHHhCCHHHHHHHHHhcCC-CCCCCCcccccccCCccCCCCCChHHHHHH-----HcCCHHHHHHHHHc
Q 006236 12 ALYNKSSILLELSASDDISAFKREIEEKGF-DVDEPSFWYGRRIGSKKMGFEERTPIMIAA-----MFGSVAVLKYVIET 85 (655)
Q Consensus 12 l~~~g~s~LL~AAa~gd~~~vk~LL~~~Ga-dIn~~dlw~g~~~~~~~~d~~G~TPLh~AA-----~~G~~evvk~LL~~ 85 (655)
.+.+|.|+||+|+..|+.+.++.+|. .|+ ++|..+ ..|.||||+|+ ..++.+++++|++.
T Consensus 107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~-------------~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~ 172 (276)
T 4hbd_A 107 ADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQN-------------RAGYSPIMLTALATLKTQDDIETVLQLFRL 172 (276)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCCC-------------TTSCCHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCCC-------------CCCCCHHHHHHHHHhhhhhhHHHHHHHHHc
Confidence 34678999999999999998888887 676 888874 89999999999 66889999999999
Q ss_pred CCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh-CCC
Q 006236 86 GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDH 164 (655)
Q Consensus 86 G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GA 164 (655)
| ++++.. +..|.||||+|+..|+ .++|++|+++|+|+|.+|.+|+||||+|+. .++.+++++||+ .|+
T Consensus 173 g-~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~------~g~~~iv~~Ll~~~ga 241 (276)
T 4hbd_A 173 G-NINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACE------HGHKEIAGLLLAVPSC 241 (276)
T ss_dssp S-CTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHTSTTC
T ss_pred C-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHH------CCCHHHHHHHHhcCCC
Confidence 9 888877 8899999999999999 999999999999999999999999999997 899999999999 899
Q ss_pred CCCcccccCCCCccccccc
Q 006236 165 TIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 165 din~~d~~g~tpl~~l~~~ 183 (655)
+++.+|.+|.+|+..+...
T Consensus 242 d~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 242 DISLTDRDGSTALMVALDA 260 (276)
T ss_dssp CTTCCCTTSCCHHHHHHHH
T ss_pred CCcCcCCCCCCHHHHHHHc
Confidence 9999999999998655443
No 45
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.84 E-value=2.1e-21 Score=189.15 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=126.2
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCccc
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSV----AVLKYVIETGKVNVN 91 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~----evvk~LL~~G~aDvN 91 (655)
++++|+.||..|+.+.++.++. .+ ++..+ +..|+||||+|+..|+. +++++||+.| +|+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE-KG--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIK 69 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH-HS--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSS
T ss_pred cccHHHHHHHcCCHHHHHHHHh-cC--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCC
Confidence 4678999999999999998886 33 44432 36799999999999975 5999999999 9999
Q ss_pred cccCCCCChHHHHHHHcCCCC---hHHHHHHHHhCCCCCcccCCCCC-CccchhhhccCCCCcChHHHHHHHHh-CCCCC
Q 006236 92 RACGSDGFTALHCAVAGGANS---SFEVVKLLLSASADVNCVDVYGN-KPVDLIPVAMKSPLHSRKRAIELLLK-GDHTI 166 (655)
Q Consensus 92 ~~~d~~G~TpLH~Aa~~G~~~---~~eiVklLL~~GADvn~~D~~G~-TPLhlAa~~~~~~~~g~~eivelLL~-~GAdi 166 (655)
.+ +..|+||||+|+..|+.+ ..+++++||++|+|+|.+|..|. ||||+|+. ......+..+++++||+ +|+++
T Consensus 70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~-~~~~~~~~~~iv~~Ll~~~gad~ 147 (186)
T 3t8k_A 70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN-YFVDENEMIPLYKLIFSQSGLQL 147 (186)
T ss_dssp CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG-CCSCHHHHHHHHHHHHTSTTCCT
T ss_pred CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH-cCCChhhHHHHHHHHHHhcCCCC
Confidence 99 899999999999998633 26899999999999999999999 99999985 01111345689999999 99999
Q ss_pred CcccccCCCCccccccc
Q 006236 167 FEEEELVNIPVPQLSKD 183 (655)
Q Consensus 167 n~~d~~g~tpl~~l~~~ 183 (655)
+.+|..|.+|+..+...
T Consensus 148 ~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 148 LIKDKWGLTALEFVKRC 164 (186)
T ss_dssp TCCCTTSCCHHHHHHTT
T ss_pred cccCCCCCCHHHHHHHc
Confidence 99999999999766543
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.83 E-value=2.2e-21 Score=194.80 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=133.1
Q ss_pred ccCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236 13 LYNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN 89 (655)
Q Consensus 13 ~~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD 89 (655)
+..|.|+||.|+.. |+.+.++.||+ .|++++..+... .......|..|.||||+|+..|+.+++++||++| ++
T Consensus 40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~ 115 (256)
T 2etb_A 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-AD 115 (256)
T ss_dssp TTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 35689999999999 88888877775 788776543111 1122234578999999999999999999999999 99
Q ss_pred cccccCCC-------------CChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236 90 VNRACGSD-------------GFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSRK 153 (655)
Q Consensus 90 vN~~~d~~-------------G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~ 153 (655)
+|.. +.. |.||||+|+..|+ .++|++|++ +|+++|.+|.+|+||||+|+. ...++.
T Consensus 116 ~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~----~~~~~~ 187 (256)
T 2etb_A 116 VHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALVM----IADNSP 187 (256)
T ss_dssp TTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH----HCCSCH
T ss_pred CCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHHH----cccCCc
Confidence 9988 655 9999999999999 999999999 999999999999999999985 124666
Q ss_pred H-------HHHHHHhCCCCC-------CcccccCCCCccccccc
Q 006236 154 R-------AIELLLKGDHTI-------FEEEELVNIPVPQLSKD 183 (655)
Q Consensus 154 e-------ivelLL~~GAdi-------n~~d~~g~tpl~~l~~~ 183 (655)
+ ++++|+++|+++ +..|..|.+|+..+...
T Consensus 188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh
Confidence 7 999999999999 88999999998665543
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.83 E-value=4.4e-21 Score=201.67 Aligned_cols=145 Identities=14% Similarity=0.041 Sum_probs=130.3
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCc
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS---VAVLKYVIETGKVN 89 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~---~evvk~LL~~G~aD 89 (655)
+..|.|+||+||..|+.+.++.||+ +|+++|.++ .+|+||||+|+..|+ .++++.|++.+.++
T Consensus 128 d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d-------------~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 128 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGD-------------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCC-------------TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 4578999999999999988877776 899999884 899999999999998 78888999886578
Q ss_pred cccccCCCCChHHHHHHH----cCCCChHHHHHHHHhCCC----------------------------------------
Q 006236 90 VNRACGSDGFTALHCAVA----GGANSSFEVVKLLLSASA---------------------------------------- 125 (655)
Q Consensus 90 vN~~~d~~G~TpLH~Aa~----~G~~~~~eiVklLL~~GA---------------------------------------- 125 (655)
++.. +..|+||||+|+. .|+ .+++++|++.++
T Consensus 194 ~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~ 269 (327)
T 1sw6_A 194 LILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269 (327)
T ss_dssp GGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred ccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHH
Confidence 9998 9999999999999 888 999999998743
Q ss_pred -----CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 126 -----DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 126 -----Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
++|.+|.+|+||||+|+. .++.+++++||++|++++.+|.+|.+|+..+.
T Consensus 270 ~Ll~~~~n~~d~~G~TpLh~A~~------~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 270 WIIANMLNAQDSNGDTCLNIAAR------LGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp HHHHHTTTCCCTTSCCHHHHHHH------HCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred HHHHhCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 688889999999999997 89999999999999999999999999987654
No 48
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.83 E-value=7.3e-21 Score=191.75 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=127.9
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCC---CCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFD---VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN 89 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~Gad---In~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD 89 (655)
+..|.|+||.|+..|+.+.++.+|. .|++ +|.. |..|+||||+|+..|+.+++++|+++| ++
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~ 70 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ-------------NDLGQTALHLAAILGEASTVEKLYAAG-AG 70 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 4568999999999999998888876 6777 6665 488999999999999999999999999 99
Q ss_pred cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-------------------------------------------
Q 006236 90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD------------------------------------------- 126 (655)
Q Consensus 90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD------------------------------------------- 126 (655)
++.. +..|.||||+|+..|+ .+++++|+++|++
T Consensus 71 ~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (282)
T 1oy3_D 71 VLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146 (282)
T ss_dssp SSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred CCCC-CCCCCCHHHHHHHcCC---cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence 9998 9999999999999999 9999999988765
Q ss_pred ----CcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc-CCCCccccccc
Q 006236 127 ----VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL-VNIPVPQLSKD 183 (655)
Q Consensus 127 ----vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~-g~tpl~~l~~~ 183 (655)
++..|..|.||||+|+. .++.+++++|+++|++++..+.. |.+|+..+...
T Consensus 147 ~~~~~~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 147 WRLQLEAENYDGHTPLHVAVI------HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp GGGGTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred hhhcCCCcCCCCcCHHHHHHH------cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence 67788899999999987 88899999999999999988754 88888655443
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.83 E-value=4.1e-21 Score=192.81 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=128.9
Q ss_pred CchHHHHHHHhCCHHHHH---HHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCc
Q 006236 16 KSSILLELSASDDISAFK---REIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVN 89 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk---~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aD 89 (655)
|.|+||.||..|+.+.++ ++|.+.|+++|... ...|..|+||||+|+.. |+.+++++||+.| ++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~ 71 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KD 71 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Cc
Confidence 789999999999998544 44456899999811 00158999999999999 9999999999998 88
Q ss_pred ccccc----------CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCC-------------CCCccchhhhccC
Q 006236 90 VNRAC----------GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY-------------GNKPVDLIPVAMK 146 (655)
Q Consensus 90 vN~~~----------d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~-------------G~TPLhlAa~~~~ 146 (655)
++... +..|.||||+|+..|+ .++|++|+++|++++..|.. |.||||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~--- 145 (256)
T 2etb_A 72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC--- 145 (256)
T ss_dssp TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH---
T ss_pred ccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH---
Confidence 76431 3679999999999999 99999999999999999986 9999999997
Q ss_pred CCCcChHHHHHHHHh---CCCCCCcccccCCCCcccccc
Q 006236 147 SPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 147 ~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~ 182 (655)
.++.+++++|++ +|++++..|.+|.+|+..+..
T Consensus 146 ---~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 146 ---TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp ---TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred ---cCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence 899999999999 999999999999999976654
No 50
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.83 E-value=3.3e-21 Score=193.15 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=80.9
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.|.|+|+.|+..++.+.++.+|. +|++++.. ..|.||||+|+..|+.+++++||+.| +|+|..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~- 66 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLP- 66 (239)
T ss_dssp ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCC-
T ss_pred cccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCc-
Confidence 35677777777766666666554 77777653 45677777777777777777777777 777777
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
|..|.||||+|+..|+ .++|++|+++|+++|.+|.+|+||||+|+. .++.+++++|+++|++++..+..+.
T Consensus 67 d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~~~ 137 (239)
T 1ycs_B 67 NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAAS------CNNVQVCKFLVESGAAVFAMTYSDM 137 (239)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCcceecCCCC
Confidence 7777777777777777 777777777777777777777777777776 6777777777777777777766665
Q ss_pred -CCccc
Q 006236 175 -IPVPQ 179 (655)
Q Consensus 175 -tpl~~ 179 (655)
+++..
T Consensus 138 ~t~l~~ 143 (239)
T 1ycs_B 138 QTAADK 143 (239)
T ss_dssp CCHHHH
T ss_pred cchHHH
Confidence 66643
No 51
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.83 E-value=4.4e-20 Score=183.04 Aligned_cols=147 Identities=21% Similarity=0.185 Sum_probs=126.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.++. .|.+.+... .....+..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 76 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 146 (236)
T 1ikn_D 76 FRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHS-------ILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQ 146 (236)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSC-------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHH-------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence 468899999999999998887776 776643221 11223688999999999999999999999999 999998
Q ss_pred cCC-CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC--ccc
Q 006236 94 CGS-DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF--EEE 170 (655)
Q Consensus 94 ~d~-~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin--~~d 170 (655)
+. .|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++.. ..+
T Consensus 147 -~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~~~~Ll~~ga~~~~~~~~ 216 (236)
T 1ikn_D 147 -EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWG------RPSTRIQQQLGQLTLENLQMLPE 216 (236)
T ss_dssp -CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTT------SSCHHHHHHHHTTSCGGGSSCCC
T ss_pred -CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccCCCCCHHHHHHc------cCchHHHHHHHHcchhhhhcCCc
Confidence 66 99999999999999 999999999999999999999999999986 899999999999999877 556
Q ss_pred ccCCCCccc
Q 006236 171 ELVNIPVPQ 179 (655)
Q Consensus 171 ~~g~tpl~~ 179 (655)
.++.++...
T Consensus 217 ~~~~~~~~~ 225 (236)
T 1ikn_D 217 SEDEESYDT 225 (236)
T ss_dssp CCTTTCCCC
T ss_pred cchHHHHhh
Confidence 666665433
No 52
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=5.6e-21 Score=188.30 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=111.7
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIET-GKVNVNRA 93 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~-G~aDvN~~ 93 (655)
.|.|+||.||..|+.+.++.+|. .|+++|..+ ..|+||||+||..|+.+++++||+. | +++|..
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g-~~~~~~ 136 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLD-------------KAGSTALYWACHGGHKDIVEMLFTQPN-IELNQQ 136 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHTTSTT-CCCCCC
T ss_pred ccccccccccccCcHHHHHHHHh-CCCCccccC-------------CCCCCHHHHHHHcCCHHHHHHHHcCCC-CCcccc
Confidence 46799999999999999888887 899999884 8899999999999999999999999 7 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .++|++||++|++++.+|.+|.||||+|+. .+..++++.|+..|+..++.+.++
T Consensus 137 -d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 137 -NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATN------AACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCS------HHHHHHHC----------------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcc------hhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999999 999999999999999999999999999986 899999999999999998766544
No 53
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.83 E-value=1.6e-20 Score=194.50 Aligned_cols=142 Identities=23% Similarity=0.292 Sum_probs=133.8
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|++||..|+.+.++.+|.+.+.++|..+ ..|.||||+|+..|+.+++++|++.| +++|..
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~- 87 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASD-------------GRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAK- 87 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence 367899999999999999999998899999885 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN 174 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~ 174 (655)
+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+. .++.+++++|+++|++++..+..+.
T Consensus 88 ~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~ 158 (351)
T 3utm_A 88 DKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFTPLHEAAS------KNRVEVCSLLLSHGADPTLVNCHGK 158 (351)
T ss_dssp CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCccccCCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999999999999998888
Q ss_pred CCcccc
Q 006236 175 IPVPQL 180 (655)
Q Consensus 175 tpl~~l 180 (655)
+++...
T Consensus 159 ~~l~~a 164 (351)
T 3utm_A 159 SAVDMA 164 (351)
T ss_dssp CHHHHC
T ss_pred cchHHH
Confidence 876443
No 54
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.83 E-value=3e-20 Score=182.03 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=97.3
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCC-CCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc--c
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDE-PSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN--R 92 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~-~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN--~ 92 (655)
|.|+||.|+..|+.+.++.+|. .+.+++. . |..|+||||+|+..|+.+++++|++.| ++++ .
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH-SKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSKM-ENVNLDD 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH-HCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHTC-TTCCGGG
T ss_pred CccHHHHHHHhCCHHHHHHHHh-cCccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhcc-ccccccc
Confidence 6799999999999999999987 4555443 4 366677777777777777777777765 3333 3
Q ss_pred -ccCCCCChHHHHHHHcCCCChHHHHHHHHhCC--CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc
Q 006236 93 -ACGSDGFTALHCAVAGGANSSFEVVKLLLSAS--ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 169 (655)
Q Consensus 93 -~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G--ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~ 169 (655)
. +..|.||||+|+..|+ .+++++|+++| ++++..|..|.||||+|+. .++.+++++|+++|++++..
T Consensus 67 ~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~ 136 (228)
T 2dzn_A 67 YP-DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG------KKWFEVSQFLIENGASVRIK 136 (228)
T ss_dssp CC-CTTSCCHHHHHHHHCC---HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCSCCC
T ss_pred cC-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCcccccCCcCCCCHHHHHHH------cCCHhHHHHHHHcCCCcccc
Confidence 3 5666777777777776 67777777766 6666666677777777665 66667777777777777766
Q ss_pred cccCCCCccccc
Q 006236 170 EELVNIPVPQLS 181 (655)
Q Consensus 170 d~~g~tpl~~l~ 181 (655)
+..|.+|+..+.
T Consensus 137 ~~~g~t~L~~A~ 148 (228)
T 2dzn_A 137 DKFNQIPLHRAA 148 (228)
T ss_dssp CTTSCCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 666666664433
No 55
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=189.91 Aligned_cols=153 Identities=22% Similarity=0.165 Sum_probs=94.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------ccc--------------cccCCccCCCCCChHHHHHHHc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------WYG--------------RRIGSKKMGFEERTPIMIAAMF 73 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------w~g--------------~~~~~~~~d~~G~TPLh~AA~~ 73 (655)
..|.|+||.|+..|+.+.++.||. .|++++..+. .+. ...+.. .+.+|.||||+|+..
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARR 167 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHc
Confidence 568899999999998888777765 7888887750 000 000111 123456666666666
Q ss_pred CCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236 74 GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK 153 (655)
Q Consensus 74 G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~ 153 (655)
|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|++.|++++. |..|.||||+|+. .++.
T Consensus 168 g~~~~v~~Ll~~g-~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~------~~~~ 235 (285)
T 3d9h_A 168 GHVECVNSLIAYG-GNIDHK-ISHLGTPLYLACENQQ---RACVKKLLESGADVNQ-GKGQDSPLHAVVR------TASE 235 (285)
T ss_dssp TCHHHHHHHHHTT-CCTTCC-BTTTBCHHHHHHHTTC---HHHHHHHHHTTCCTTC-CBTTBCHHHHHHH------TTCH
T ss_pred CCHHHHHHHHHCC-CCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHH------cCCH
Confidence 6666666666666 666655 5566666666666666 6666666666666663 5566666666655 5566
Q ss_pred HHHHHHHhCCCCCCcccccCCCCcccc
Q 006236 154 RAIELLLKGDHTIFEEEELVNIPVPQL 180 (655)
Q Consensus 154 eivelLL~~GAdin~~d~~g~tpl~~l 180 (655)
+++++|+++|++++.+|.+|.+|+..+
T Consensus 236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 236 ELACLLMDFGADTQAKNAEGKRPVELV 262 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence 666666666666666666666665444
No 56
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.83 E-value=3.2e-20 Score=183.23 Aligned_cols=143 Identities=30% Similarity=0.379 Sum_probs=125.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+|+.|+..|+.+.++.+++ .|++++..+ ..|+||||+|+..|+.+++++|++.| ++++..
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 73 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCS-------------EDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPK 73 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCccC-------------CCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCC
Confidence 457899999999999998887776 899999874 78899999999999999999999998 899888
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
+..|.||||+|+..|+ .+++++|++.| ++++..|..|.||||+|+. .++.+++++|+++|++++..+..
T Consensus 74 -~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~ 143 (237)
T 3b7b_A 74 -DAEGSTCLHLAAKKGH---YEVVQYLLSNGQMDVNCQDDGGWTPMIWATE------YKHVDLVKLLLSKGSDINIRDNE 143 (237)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTT
T ss_pred -CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCccCCC
Confidence 8889999999999998 99999999988 8899899999999999887 78889999999999999988888
Q ss_pred CCCCccccc
Q 006236 173 VNIPVPQLS 181 (655)
Q Consensus 173 g~tpl~~l~ 181 (655)
|.+++..+.
T Consensus 144 g~t~L~~A~ 152 (237)
T 3b7b_A 144 ENICLHWAA 152 (237)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 888875443
No 57
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.83 E-value=9.7e-21 Score=189.69 Aligned_cols=139 Identities=24% Similarity=0.261 Sum_probs=124.2
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++||.|+..|+.+.++.+|. .|+++|..+ ..|+||||+||..|+.+++++||++| +|+|..
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~ 99 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPN-------------DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAA 99 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc
Confidence 346799999999999998888875 899999885 88999999999999999999999999 999999
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCC-CccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGN-KPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~-TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
|..|+||||+|+..|+ .++|++|+++|++++.+|..|. ||||+|.. ...++.+++++|+++|++++..+..
T Consensus 100 -d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~----~~~g~~~~~~~Ll~~~a~~~~~~~~ 171 (239)
T 1ycs_B 100 -DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEE----MEEGYTQCSQFLYGVQEKMGIMNKG 171 (239)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS----SSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHH----hhhccHHHHHHHHHhhhcccccccc
Confidence 9999999999999999 9999999999999999998887 99999832 3478999999999999999987655
Q ss_pred CCC
Q 006236 173 VNI 175 (655)
Q Consensus 173 g~t 175 (655)
+.+
T Consensus 172 ~~~ 174 (239)
T 1ycs_B 172 VIY 174 (239)
T ss_dssp EEE
T ss_pred eEE
Confidence 433
No 58
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=192.06 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=128.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.||..|+.+.++.+|. .|+++|..+ .+|+||||+|+..|+.+++++|++.| ++++..
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~ 121 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIIT-------------ADHVSPLHEACLGGHLSCVKILLKHG-AQVNGV 121 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEEC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCC
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCC
Confidence 568899999999999999888886 899999874 88999999999999999999999999 999988
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .+++++|++.|++++..+ +|.||||+|+. .++.+++++|+++|++++..|..|
T Consensus 122 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~------~g~~~~v~~Ll~~g~~~~~~d~~g 190 (285)
T 3d9h_A 122 -TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAAR------RGHVECVNSLIAYGGNIDHKISHL 190 (285)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHH------HTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred -CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCcCCCC
Confidence 8999999999999999 999999999999998644 59999999987 889999999999999999999999
Q ss_pred CCCccccccc
Q 006236 174 NIPVPQLSKD 183 (655)
Q Consensus 174 ~tpl~~l~~~ 183 (655)
.+++..+...
T Consensus 191 ~t~L~~A~~~ 200 (285)
T 3d9h_A 191 GTPLYLACEN 200 (285)
T ss_dssp BCHHHHHHHT
T ss_pred CCHHHHHHHc
Confidence 9988655443
No 59
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.83 E-value=3.6e-20 Score=182.73 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=122.8
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236 13 LYNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN 89 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD 89 (655)
+.+|.|+||.|+..|+.+.++.++. +.|.++|..+ ..|.||||+|+..|+.+++++|++.| ++
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~ 71 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-------------NLRQTPLHLAVITTLPSVVRLLVTAG-AS 71 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-------------ccCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 3568999999999999999988886 5899999885 77888999998888888888888888 88
Q ss_pred cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCC----CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236 90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASA----DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA----Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd 165 (655)
++.. +..|.||||+|+..|+ .+++++|++.++ +++..|..|.||||+|+. .++.+++++|+++|++
T Consensus 72 ~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~ 141 (241)
T 1k1a_A 72 PMAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN------TECQETVQLLLERGAD 141 (241)
T ss_dssp TTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCC
T ss_pred cccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccccCcCCCcHHHHHHH------cCCHHHHHHHHHcCCC
Confidence 8887 8888888888888888 888888888876 788888888888888886 7888888888888888
Q ss_pred CCccc-ccCCCCcccccc
Q 006236 166 IFEEE-ELVNIPVPQLSK 182 (655)
Q Consensus 166 in~~d-~~g~tpl~~l~~ 182 (655)
++..+ ..|.+|+..+..
T Consensus 142 ~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 142 IDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp TTCCCTTTCCCHHHHHHH
T ss_pred cccccccCCCcHHHHHHH
Confidence 88877 677787755443
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.83 E-value=4.5e-20 Score=171.36 Aligned_cols=121 Identities=25% Similarity=0.304 Sum_probs=114.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.++. .|++++..+ ..|+||||+|+..|+.+++++|+++| +++|..
T Consensus 32 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 96 (153)
T 1awc_B 32 WLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDART-------------KVDRTPLHMAASEGHANIVEVLLKHG-ADVNAK 96 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCC
Confidence 468899999999999998887775 899999874 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHH
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 159 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelL 159 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|
T Consensus 97 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~i~~~L 152 (153)
T 1awc_B 97 -DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISID------NGNEDLAEIL 152 (153)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHH
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------cCCHHHHHHh
Confidence 9999999999999999 999999999999999999999999999997 8999999987
No 61
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.83 E-value=2.3e-20 Score=201.72 Aligned_cols=156 Identities=23% Similarity=0.291 Sum_probs=117.0
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC--------------------cccccccCCccCCCCCChHHHHHHHcC
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPS--------------------FWYGRRIGSKKMGFEERTPIMIAAMFG 74 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d--------------------lw~g~~~~~~~~d~~G~TPLh~AA~~G 74 (655)
.|.++|+.|+..++.+.++.++. .|+++|..+ ++.....+.+..+..|.||||+|+..|
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 289 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence 45566666666666665555554 566665543 011111222333578888888888888
Q ss_pred CHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHH
Q 006236 75 SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKR 154 (655)
Q Consensus 75 ~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~e 154 (655)
+.+++++|+++| +++|.. +..|.||||+|+..|+ .++|++|+++|+++|.+|..|.||||+|+. .++.+
T Consensus 290 ~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~------~g~~~ 358 (437)
T 1n11_A 290 HVPVADVLIKHG-VMVDAT-TRMGYTPLHVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLHQAAQ------QGHTD 358 (437)
T ss_dssp CHHHHHHHHHHT-CCTTCC-CSSCCCHHHHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHH
T ss_pred CHHHHHHHHhCC-ccCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH------CChHH
Confidence 888888888888 888887 8888888888888888 888888888888888888888888888887 78888
Q ss_pred HHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 155 AIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 155 ivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
++++|+++|++++.+|.+|.+|+..+..
T Consensus 359 iv~~Ll~~ga~~~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 359 IVTLLLKNGASPNEVSSDGTTPLAIAKR 386 (437)
T ss_dssp HHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 8888888888888888888888765543
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.82 E-value=2.5e-20 Score=175.03 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=120.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..|+.+.++.+|. .|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 98 (167)
T 3v31_A 34 EEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLG-------------KGRESALSLACSKGYTDIVKMLLDCG-VDVNEY 98 (167)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcC
Confidence 468899999999999988887776 799999874 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF 167 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin 167 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++++++.
T Consensus 99 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 99 -DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVA------LGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHHHC
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCcHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999997 899999999999877654
No 63
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=3.8e-20 Score=165.78 Aligned_cols=110 Identities=25% Similarity=0.309 Sum_probs=101.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.+.++|+.|+..|+.+.++.+|. .|+++|..+ ..|+||||+|+..|+.+++++|++.| +++|..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~- 69 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTL-------------EGGRKPLHYAADCGQLEILEFLLLKG-ADINAP- 69 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCC-------------TTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCC-
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCcCccC-------------CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcC-
Confidence 46789999999999999988876 889998874 88999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~ 143 (655)
|..|+||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|..
T Consensus 70 d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 70 DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9999999999999999 999999999999999999999999999853
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.82 E-value=4.8e-20 Score=177.30 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=117.3
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.|+..++.+.++.++. .|++++..+ ..|.||||+|+..|+.+++++|+++| ++++..
T Consensus 66 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 130 (192)
T 2rfm_A 66 IEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKD-------------FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDR 130 (192)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCC
T ss_pred ccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence 468899999999999998887776 799999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD 163 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G 163 (655)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|
T Consensus 131 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 131 -NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARI------FGRQEVIKIFTEVR 190 (192)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------hCcHHHHHHHHhcc
Confidence 9999999999999999 999999999999999999999999999997 89999999999864
No 65
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.82 E-value=6.5e-20 Score=189.98 Aligned_cols=99 Identities=27% Similarity=0.302 Sum_probs=78.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.||..|+.+.++.||. .|+++|..+ ..|+||||+|+..|+.+++++|+++| ++++..
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~ 120 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKD-------------KGGLVPLHNACSYGHYEVTELLLKHG-ACVNAM 120 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCC
Confidence 457899999999999988887776 899999885 67788888888888888888888887 888777
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD 131 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D 131 (655)
+..|.||||+|+..|+ .+++++|+++|++++..+
T Consensus 121 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~ 154 (351)
T 3utm_A 121 -DLWQFTPLHEAASKNR---VEVCSLLLSHGADPTLVN 154 (351)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCC
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccc
Confidence 7777888888887777 777777777666665544
No 66
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.82 E-value=5.5e-20 Score=192.23 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=87.5
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------------------------ccccccCCccCCCCCChHHHH
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------------------------WYGRRIGSKKMGFEERTPIMI 69 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------------------------w~g~~~~~~~~d~~G~TPLh~ 69 (655)
..|.|+||.|+..|+.+.++.||.+.|+++|..+. +.....+.+..|.+|+||||+
T Consensus 166 ~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 245 (337)
T ss_dssp TCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred CCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 46789999999999999999999888999998750 001112223345556666666
Q ss_pred HHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCC
Q 006236 70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPL 149 (655)
Q Consensus 70 AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~ 149 (655)
|+..|+.+++++|++.+.+++|.+ |.+|+||||+|+..|+ .++|++||++|||+|.+ +|||+|+.
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~vn~~-d~~G~TpL~~A~~~g~---~~iv~~Ll~~GAd~n~~-----~~L~~A~~------ 310 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKL---KKIAELLCKRGASTDCG-----DLVMTARR------ 310 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHTTSCSSTTC-----CHHHHHHH------
T ss_pred HHHhhhhHHHHHHHHhcCCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCC-----CHHHHHHH------
Confidence 666666666666665433566655 5666666666666665 66666666666655543 35666654
Q ss_pred cChHHHHHHHHhCCCCCCc
Q 006236 150 HSRKRAIELLLKGDHTIFE 168 (655)
Q Consensus 150 ~g~~eivelLL~~GAdin~ 168 (655)
.++.+||++||++||++|+
T Consensus 311 ~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 311 NYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTCHHHHHHHHHTTCCC--
T ss_pred cCCHHHHHHHHHCcCCCCC
Confidence 5556666666666666654
No 67
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.82 E-value=8e-21 Score=190.79 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=126.7
Q ss_pred cCCchHHHHHH---HhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236 14 YNKSSILLELS---ASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV 90 (655)
Q Consensus 14 ~~g~s~LL~AA---a~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv 90 (655)
..|.|+||.|+ ..|+.+.++.||. .|++++....+ .+......|..|+||||+|+..|+.++|++||++| +++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~ 119 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADV 119 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCc
Confidence 44889999998 5677777777765 66553321100 01112223568999999999999999999999999 999
Q ss_pred ccccC--------------CCCChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcCh-
Q 006236 91 NRACG--------------SDGFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSR- 152 (655)
Q Consensus 91 N~~~d--------------~~G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~- 152 (655)
|.. + ..|.||||+|+..|+ .++|++|++ .|++++.+|..|+||||+|+. .++
T Consensus 120 ~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~------~~~~ 189 (260)
T 3jxi_A 120 HAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVA------IADN 189 (260)
T ss_dssp TCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH------HCCS
T ss_pred Ccc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHH------hccC
Confidence 988 6 689999999999999 999999999 999999999999999999986 333
Q ss_pred --------HHHHHHHHhCCCCC-------CcccccCCCCccccccc
Q 006236 153 --------KRAIELLLKGDHTI-------FEEEELVNIPVPQLSKD 183 (655)
Q Consensus 153 --------~eivelLL~~GAdi-------n~~d~~g~tpl~~l~~~ 183 (655)
.+++++|+++|+++ +..|..|.+|+..+...
T Consensus 190 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence 68999999999999 67899999998665544
No 68
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=5.2e-20 Score=167.74 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=106.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD 139 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh 139 (655)
|.+|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 689999999999999999999999999 999998 9999999999999999 99999999999999999999999999
Q ss_pred hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
+|+. .++.+++++|+++|++++.+|..|.+|+..+.
T Consensus 82 ~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 82 DAAK------NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp HHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred HHHH------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 9997 89999999999999999999999999986654
No 69
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.82 E-value=5.8e-20 Score=184.43 Aligned_cols=143 Identities=20% Similarity=0.280 Sum_probs=130.5
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
+|.++|+.|+..|+.+.++.+|+ .|.++|... +..|+||||+|+..|+.+++++|++.| ++++..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~- 68 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLR- 68 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred ccchHHHHHHHcCCHHHHHHHHH-cCCCccccc------------CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccc-
Confidence 46789999999999999888886 899998874 578999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc-----
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE----- 169 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~----- 169 (655)
+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+. .++.+++++|+++|++++..
T Consensus 69 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 69 KKNGATPFLLAAIAGS---VKLLKLFLSKGADVNECDFYGFTAFMEAAV------YGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTCCBHHHHHHH------TTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCcccCCHHHHHHH------hCCHHHHHHHHHhCCCcccccccHH
Confidence 9999999999999999 999999999999999999999999999997 89999999999999999986
Q ss_pred -----cccCCCCccccc
Q 006236 170 -----EELVNIPVPQLS 181 (655)
Q Consensus 170 -----d~~g~tpl~~l~ 181 (655)
+..|.+++..+.
T Consensus 140 ~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 140 DQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHTTCCCCCHHHHHH
T ss_pred HHHhhccCCCcHHHHHH
Confidence 566777764443
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.82 E-value=7.4e-20 Score=169.57 Aligned_cols=122 Identities=21% Similarity=0.264 Sum_probs=113.8
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||. |..|+.+.++.+++ .|+++|..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 34 ~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 97 (156)
T 1bd8_A 34 RFGKTALQV-MMFGSTAIALELLK-QGASPNVQD-------------TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVP 97 (156)
T ss_dssp TTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCC
T ss_pred CCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCc
Confidence 468899999 88898888877775 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG 162 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~ 162 (655)
+..|.||||+|+..|+ .+++++|++. ++++.+|.+|.||||+|+. .++.+++++|+++
T Consensus 98 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~------~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 98 -DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQ------RGAQDLVDILQGH 155 (156)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHH------SCCHHHHHHHHTT
T ss_pred -CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHH------cCcHHHHHHHHhh
Confidence 9999999999999999 9999999999 9999999999999999997 8999999999974
No 71
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.81 E-value=3e-20 Score=196.27 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=90.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.||..|+.+.++.||+ .|+++|..+ ..|.||||+||..|+.++|++||+.| ++++.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~- 81 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQN-------------RFGCTALHLACKFGCVDTAKYLASVG-EVHSL- 81 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHCCHHHHHHHHHHC-CCCCC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCccc-
Confidence 457899999999999999888886 799998875 67777777777777777777777777 65543
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhC----CCCCcc-----------------cCCCCCCccchhhhccCCCCcC-
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSA----SADVNC-----------------VDVYGNKPVDLIPVAMKSPLHS- 151 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~----GADvn~-----------------~D~~G~TPLhlAa~~~~~~~~g- 151 (655)
.+|.||||+|+..|+ .++|++|++. |++++. .|..|.||||+|+. .+
T Consensus 82 --~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------~g~ 150 (364)
T 3ljn_A 82 --WHGQKPIHLAVMANK---TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG------LGP 150 (364)
T ss_dssp --BTTBCHHHHHHHTTC---HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHH------SCG
T ss_pred --cCCCCHHHHHHHcCC---HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHH------cCC
Confidence 345555555555555 5555555555 454444 55555555555554 44
Q ss_pred -hHHHHHHHHhCCCCCCcccccCCCCcc
Q 006236 152 -RKRAIELLLKGDHTIFEEEELVNIPVP 178 (655)
Q Consensus 152 -~~eivelLL~~GAdin~~d~~g~tpl~ 178 (655)
+.+++++|+++|++++..|..|.+++.
T Consensus 151 ~~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 178 (364)
T 3ljn_A 151 EYLEMIKILVQLGASPTAKDKADETPLM 178 (364)
T ss_dssp GGHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred chHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 555555555555555555555555553
No 72
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.81 E-value=2.7e-20 Score=196.61 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=132.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----cccccc-----------------------------------c
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS----FWYGRR-----------------------------------I 54 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----lw~g~~-----------------------------------~ 54 (655)
..|.|+||+|+..|+.+.++.||. .|++++..+ +.+... +
T Consensus 51 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (364)
T 3ljn_A 51 RFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI 129 (364)
T ss_dssp TTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEE
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhh
Confidence 457788888888887777766665 677776633 111100 1
Q ss_pred CCccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-----C
Q 006236 55 GSKKMGFEERTPIMIAAMFG--SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD-----V 127 (655)
Q Consensus 55 ~~~~~d~~G~TPLh~AA~~G--~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-----v 127 (655)
.....|..|.||||+|+..| +.+++++||+.| +|+|.. +..|.||||+|+..|+ .++|++|+++|++ +
T Consensus 130 ~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~ 204 (364)
T 3ljn_A 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVPSKSSLRL 204 (364)
T ss_dssp TTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCSCSSSCCT
T ss_pred ccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccccccccc
Confidence 11225678999999999999 999999999999 999998 9999999999999999 9999999999999 9
Q ss_pred cccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236 128 NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 128 n~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~ 183 (655)
|..|..|+||||+|+. .++.+++++||++|++++..|..|.+|+..+...
T Consensus 205 ~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 205 DYANKQGNSHLHWAIL------INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254 (364)
T ss_dssp TCCCTTCCCTTHHHHT------TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccCCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 9999999999999997 8999999999999999999999999998665543
No 73
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.81 E-value=2.6e-20 Score=188.99 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=127.5
Q ss_pred cCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236 14 YNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV 90 (655)
Q Consensus 14 ~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv 90 (655)
..|.|+||.|+.. |+.+.++.||+ .|++++....+ ........|..|.||||+|+..|+.+++++||++| +|+
T Consensus 52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~--i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~ 127 (273)
T 2pnn_A 52 ETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQF--VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADV 127 (273)
T ss_dssp TTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHH--HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred cCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHH--hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCc
Confidence 5789999999986 77777777765 67653321000 00111223578999999999999999999999999 999
Q ss_pred ccccCC--------------CCChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcCh-
Q 006236 91 NRACGS--------------DGFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSR- 152 (655)
Q Consensus 91 N~~~d~--------------~G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~- 152 (655)
|.. +. .|.||||+|+..|+ .++|++||+ .|++++.+|.+|+||||+|+. .++
T Consensus 128 ~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~------~~~~ 197 (273)
T 2pnn_A 128 QAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVE------VADN 197 (273)
T ss_dssp TCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH------HCCS
T ss_pred Ccc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH------ccCc
Confidence 988 55 79999999999999 999999999 999999999999999999986 454
Q ss_pred --------HHHHHHHHhCCCCCC-------cccccCCCCccccccc
Q 006236 153 --------KRAIELLLKGDHTIF-------EEEELVNIPVPQLSKD 183 (655)
Q Consensus 153 --------~eivelLL~~GAdin-------~~d~~g~tpl~~l~~~ 183 (655)
.+++++|+++|++++ ..|..|.+|+..+...
T Consensus 198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 799999999999997 4788999998665443
No 74
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.81 E-value=1.6e-19 Score=181.17 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=125.7
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS----VAVLKYVIETGKVN 89 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~----~evvk~LL~~G~aD 89 (655)
..|.++|+.|+..|+.+.++.+|...|++++..+ ..|+||||+|+..++ .+++++|++.| ++
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~ 211 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACD-------------NMGRNALIHALLSSDDSDVEAITHLLLDHG-AD 211 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CC
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-------------CCCCCHHHHHHHccccchHHHHHHHHHHcC-CC
Confidence 4578999999999999999999986699999884 889999999999999 99999999999 99
Q ss_pred cccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236 90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 168 (655)
Q Consensus 90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~ 168 (655)
+|.. +..|.||||+|+..|+ .+++++|++ .|++++.+|..|.||||+|+. .++.+++++|+++|++++.
T Consensus 212 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~------~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 212 VNVR-GERGKTPLILAVEKKH---LGLVQRLLEQEHIEINDTDSDGKTALLLAVE------LKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp SSCC-CTTSCCHHHHHHHTTC---HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSSCSCC
T ss_pred CCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhccCCCccccCCCCCcHHHHHHH------cCcHHHHHHHHHcCCCCCc
Confidence 9998 9999999999999999 999999999 899999999999999999997 8999999999999999997
Q ss_pred cc
Q 006236 169 EE 170 (655)
Q Consensus 169 ~d 170 (655)
+|
T Consensus 282 ~d 283 (285)
T 1wdy_A 282 GD 283 (285)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 75
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.81 E-value=2.4e-20 Score=189.21 Aligned_cols=151 Identities=18% Similarity=0.245 Sum_probs=130.7
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcC
Q 006236 13 LYNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETG 86 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G 86 (655)
+..|.++||.||..|+.+.++.+|+ +.+.+++..+ ...|..|+||||+|+.. |+.+++++||+.|
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3568999999999999999888886 4677776431 11258899999999997 9999999999998
Q ss_pred CCc-------ccc----ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC--------------CCCCccchh
Q 006236 87 KVN-------VNR----ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV--------------YGNKPVDLI 141 (655)
Q Consensus 87 ~aD-------vN~----~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~--------------~G~TPLhlA 141 (655)
++ +|. . +..|.||||+|+..|+ .++|++||++|++++..|. .|.||||+|
T Consensus 81 -a~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A 155 (273)
T 2pnn_A 81 -RKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155 (273)
T ss_dssp -HHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred -ccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHH
Confidence 66 333 3 6689999999999999 9999999999999999997 799999999
Q ss_pred hhccCCCCcChHHHHHHHHh---CCCCCCcccccCCCCccccccc
Q 006236 142 PVAMKSPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 142 a~~~~~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~~ 183 (655)
+. .++.+++++||+ +|++++..|.+|.+|+..+...
T Consensus 156 ~~------~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~ 194 (273)
T 2pnn_A 156 AC------TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194 (273)
T ss_dssp HH------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HH------cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence 97 899999999999 9999999999999999766543
No 76
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.81 E-value=7.1e-20 Score=195.72 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=126.2
Q ss_pred ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cc--------------cccc---cCCccCCCCCChHHHH
Q 006236 13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FW--------------YGRR---IGSKKMGFEERTPIMI 69 (655)
Q Consensus 13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw--------------~g~~---~~~~~~d~~G~TPLh~ 69 (655)
+..|.|+||.|+..|+.+.++.||. .|++++..+ +. .... .+.+..|..|.||||+
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 3578999999999999988877776 899999875 11 1111 3445567888888888
Q ss_pred HHHcC---CHHHHHHHHHcCCCccccc-------cCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCcc
Q 006236 70 AAMFG---SVAVLKYVIETGKVNVNRA-------CGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPV 138 (655)
Q Consensus 70 AA~~G---~~evvk~LL~~G~aDvN~~-------~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPL 138 (655)
|+..+ +.+++++|++.| ++++.. .+..|.||||+|+..|+ .++|++|++.+ +++|.+|.+|.|||
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCcCCCCCCHH
Confidence 88887 788888888888 888752 15688888888888888 88888888765 88888888888888
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
|+|+. .++.+++++|+++|++++..|..|.+++..+..
T Consensus 318 ~~A~~------~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~ 355 (373)
T 2fo1_E 318 MLAAQ------EGRIEVVMYLIQQGASVEAVDATDHTARQLAQA 355 (373)
T ss_dssp HHHHH------HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred HHHHH------cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHH
Confidence 88887 788888888888888888888888888765543
No 77
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.81 E-value=1e-20 Score=184.25 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=117.7
Q ss_pred CCchHHHHHHHhCCHH---HHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC------HHHHHHHHHc
Q 006236 15 NKSSILLELSASDDIS---AFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS------VAVLKYVIET 85 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~---~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~------~evvk~LL~~ 85 (655)
.|.|+||.|+..++.+ .++++|++.|++||.++ .+|+||||+|+..|+ .+++++||++
T Consensus 37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-------------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~ 103 (186)
T 3t8k_A 37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-------------KEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103 (186)
T ss_dssp HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-------------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-------------CCCCcHHHHHHHcCCcchhhHHHHHHHHHHC
Confidence 4889999999999865 36777777999999985 899999999999987 6889999999
Q ss_pred CCCccccccCCCCC-hHHHHHHHcCCC--ChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236 86 GKVNVNRACGSDGF-TALHCAVAGGAN--SSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161 (655)
Q Consensus 86 G~aDvN~~~d~~G~-TpLH~Aa~~G~~--~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~ 161 (655)
| +|+|.+ |..|. ||||+|+..+.. ...+++++||+ +|+|++.+|..|.||||+|+. .++.+++++|++
T Consensus 104 G-adin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~------~~~~~~v~~L~~ 175 (186)
T 3t8k_A 104 G-ADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR------CQKPIALKMMED 175 (186)
T ss_dssp T-CCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT------TTCHHHHHHHHH
T ss_pred C-CCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH------cCCHHHHHHHHH
Confidence 9 999999 99999 999999995541 12679999999 999999999999999999987 899999999998
Q ss_pred CCCCCCccc
Q 006236 162 GDHTIFEEE 170 (655)
Q Consensus 162 ~GAdin~~d 170 (655)
+..+.++++
T Consensus 176 ~~~~~~~~~ 184 (186)
T 3t8k_A 176 YIKKYNLKE 184 (186)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHhccc
Confidence 766666544
No 78
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.80 E-value=2.1e-20 Score=187.74 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=129.3
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHH---HcCCHHHHHHHHHcCC
Q 006236 14 YNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAA---MFGSVAVLKYVIETGK 87 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA---~~G~~evvk~LL~~G~ 87 (655)
..+.++|+.|+..|+.+.++.+|+ +.|.+++..+ ...|..|+||||+|+ ..|+.+++++|++.|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g- 72 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIA- 72 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH-
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc-
Confidence 457899999999999998666665 6899998764 122577999999999 679999999999987
Q ss_pred Cc-----------cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC--------------CCCCCccchhh
Q 006236 88 VN-----------VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD--------------VYGNKPVDLIP 142 (655)
Q Consensus 88 aD-----------vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D--------------~~G~TPLhlAa 142 (655)
++ ++.. +..|.||||+|+..|+ .++|++|+++|++++..| ..|.||||+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 148 (260)
T 3jxi_A 73 EKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148 (260)
T ss_dssp HHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH
T ss_pred ccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH
Confidence 55 2333 4589999999999999 999999999999999999 68999999999
Q ss_pred hccCCCCcChHHHHHHHHh---CCCCCCcccccCCCCcccccc
Q 006236 143 VAMKSPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 143 ~~~~~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~ 182 (655)
. .++.+++++|++ +|++++..|..|.+|+..+..
T Consensus 149 ~------~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 149 C------TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp H------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred H------cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHH
Confidence 7 899999999999 999999999999999976653
No 79
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=175.48 Aligned_cols=144 Identities=20% Similarity=0.238 Sum_probs=132.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..+.++|+.|+..|+.+.++.++. .|++++..+ ..|.||||+|+..|+.+++++|++.+ ++++..
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~ 71 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVE-AGYDVRQPD-------------KENVTLLHWAAINNRIDLVKYYISKG-AIVDQL 71 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred cccchHHHHHHHcCChHHHHHHHH-cCCCcCCCC-------------CCCCCHHHHHHHhCCHHHHHHHHHcC-Ccchhh
Confidence 456789999999999999988886 899999874 88999999999999999999999999 888877
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
.+..|.||||+|+..|+ .+++++|++.|++++..|..|.||||+|+. .++.+++++|+++|++++..+..|
T Consensus 72 ~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~~~~~~~~~~~g 142 (240)
T 3eu9_A 72 GGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQ------FGHTSIVAYLIAKGQDVDMMDQNG 142 (240)
T ss_dssp BTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------cCHHHHHHHHHhcCCCccccCCCC
Confidence 56679999999999999 999999999999999999999999999997 899999999999999999999999
Q ss_pred CCCccccc
Q 006236 174 NIPVPQLS 181 (655)
Q Consensus 174 ~tpl~~l~ 181 (655)
.+++..+.
T Consensus 143 ~t~l~~a~ 150 (240)
T 3eu9_A 143 MTPLMWAA 150 (240)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHH
Confidence 99986554
No 80
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.80 E-value=1.5e-19 Score=195.30 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=132.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+||.||..|+.+.++.||+ .|+++|..+ ..|.||||+||..|+.+++++|++.| +++|..
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~ 76 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSN-------------VKVETPLHMAARAGHTEVAKYLLQNK-AKVNAK 76 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHH-TTCCSCCSS-------------SCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCC
Confidence 468999999999999999988887 799999874 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV 173 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g 173 (655)
+..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+. .++.++++.|+++|++++..+..|
T Consensus 77 -~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~~~~~~~~~~~g 146 (437)
T 1n11_A 77 -AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAR------EGHVETVLALLEKEASQACMTKKG 146 (437)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred -CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHH------cCCHHHHHHHHhCCCCCcCCCCCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999999999988889
Q ss_pred CCCccccccc
Q 006236 174 NIPVPQLSKD 183 (655)
Q Consensus 174 ~tpl~~l~~~ 183 (655)
.+++..+...
T Consensus 147 ~t~L~~A~~~ 156 (437)
T 1n11_A 147 FTPLHVAAKY 156 (437)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHc
Confidence 9888655443
No 81
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.5e-19 Score=154.38 Aligned_cols=93 Identities=40% Similarity=0.590 Sum_probs=88.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236 62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI 141 (655)
Q Consensus 62 ~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA 141 (655)
+|+||||+|+..|+.+++++|++.| +++|.+ +..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 4899999999999999999999999 999998 9999999999999999 9999999999999999999999999999
Q ss_pred hhccCCCCcChHHHHHHHHhCCCC
Q 006236 142 PVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 142 a~~~~~~~~g~~eivelLL~~GAd 165 (655)
+. .++.+++++|+++|++
T Consensus 76 ~~------~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 AR------NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HH------TTCHHHHHHHHHTTCC
T ss_pred HH------cCCHHHHHHHHHcCCC
Confidence 97 8999999999999985
No 82
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.80 E-value=2.3e-19 Score=187.49 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=123.7
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc---
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN--- 91 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN--- 91 (655)
++.|+|+.|+..|+++.|+.||+ +|+|||.++ +..|+||||+||..|+.++|++||++| ++++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~-~Gadvn~~~------------~~~g~TpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~ 89 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRK 89 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred CCChHHHHHHHcCCHHHHHHHHH-CCCCCCccC------------CCCCcCHHHHHHHcCCHHHHHHHHHcC-Cchhhhc
Confidence 46789999999999999888886 899999885 456999999999999999999999998 7654
Q ss_pred ------------------------------cccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCccc----------C
Q 006236 92 ------------------------------RACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCV----------D 131 (655)
Q Consensus 92 ------------------------------~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~----------D 131 (655)
.. +..|.||||+|+..|+ .+++++|+++|++++.. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~---~~~~~~ll~~ga~~~~~~~~~~~~~~~~ 165 (337)
T 4g8k_A 90 KNGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLR 165 (337)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCC-----CT
T ss_pred cCCCchhHHHHhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc---HHHHHHHHHcCCCcchhhcccccccccc
Confidence 34 6789999999999999 99999999999998754 4
Q ss_pred CCCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCcc
Q 006236 132 VYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVP 178 (655)
Q Consensus 132 ~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~ 178 (655)
..|.||||+|+. .++.+++++||+ .|++++..|..|.+++.
T Consensus 166 ~~g~T~L~~A~~------~g~~~~v~~LL~~~gad~n~~d~~g~t~l~ 207 (337)
T 4g8k_A 166 KGGATALMDAAE------KGHVEVLKILLDEMGADVNACDNMGRNALI 207 (337)
T ss_dssp TCSCCHHHHHHH------HTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred CCCCcHHHHHHH------CCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence 568999999997 899999999995 69999999999998874
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.80 E-value=4.6e-20 Score=168.41 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=105.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCC-CCCcc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY-GNKPV 138 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~-G~TPL 138 (655)
|..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+. |+ .+++++|+++|++++.+|.. |.|||
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAG-ADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 589999999999999999999999999 999998 9999999999999 99 99999999999999999999 99999
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
|+|+. .++.+++++|+++|++++..|..|.+|+..+..
T Consensus 83 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 120 (136)
T 1d9s_A 83 HDAAR------EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120 (136)
T ss_dssp HHHHH------HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHH
T ss_pred HHHHH------cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 99997 899999999999999999999999999865543
No 84
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=189.07 Aligned_cols=142 Identities=22% Similarity=0.289 Sum_probs=122.2
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCcccc
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVNVNR 92 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aDvN~ 92 (655)
..++|+.|+..|+.+.++.+|. .|++++... .....+..|+||||+|+.. |+.+++++||++| +|+|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~ 221 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPL-------PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDA 221 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCE-------ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHh-cCCcccccC-------CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCC
Confidence 3467999999999999999885 899998731 0001258899999999997 8999999999999 99999
Q ss_pred ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236 93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL 172 (655)
Q Consensus 93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~ 172 (655)
. |..|+||||+|+..|+ .++|++||++|+|++.+|.+|.||||+|+. .++.+++++|+++|++ .
T Consensus 222 ~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------~~~~~iv~~Ll~~ga~------~ 285 (301)
T 2b0o_E 222 K-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK------KHHKECEELLEQAQAG------T 285 (301)
T ss_dssp C-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHH------T
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHhcCC------C
Confidence 8 9999999999999999 999999999999999999999999999997 8999999999999876 4
Q ss_pred CCCCcccccc
Q 006236 173 VNIPVPQLSK 182 (655)
Q Consensus 173 g~tpl~~l~~ 182 (655)
+.+|+..+..
T Consensus 286 g~tpLh~A~~ 295 (301)
T 2b0o_E 286 FAFPLHVDYS 295 (301)
T ss_dssp TSSCCC----
T ss_pred CCChhHHHHh
Confidence 5677765543
No 85
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.4e-19 Score=199.53 Aligned_cols=134 Identities=23% Similarity=0.302 Sum_probs=118.0
Q ss_pred chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHH---cCCHHHHHHHHHcCCCccccc
Q 006236 17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAM---FGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~---~G~~evvk~LL~~G~aDvN~~ 93 (655)
.+.|+.|+..|+.+.++.+|. .|+++|... .....|..|+||||+|+. .|+.+++++||++| +|+|..
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~-------~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~ 203 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFA-NGQDFGQPL-------PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAK 203 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-TTCCSSSCB-------CCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCC
T ss_pred HHHHHHHHhccCHHHHHHHHh-hcccccCCC-------CCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCcc
Confidence 467999999999999999987 899999762 111225789999999976 89999999999999 999999
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE 169 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~ 169 (655)
|..|+||||+|+..|+ .++|++||++|||+|.+|.+|.||||+|+. .++.+++++|+++|++++..
T Consensus 204 -d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 204 -AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK------KHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp -CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHH------TTCHHHHHHHHHTCC-----
T ss_pred -CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHhCCCCCCC
Confidence 9999999999999999 999999999999999999999999999997 89999999999999999863
No 86
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.79 E-value=6.6e-20 Score=188.85 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=82.7
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----c--------------ccccccCCccCCCCCChHHHHHHHcCC
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS----F--------------WYGRRIGSKKMGFEERTPIMIAAMFGS 75 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----l--------------w~g~~~~~~~~d~~G~TPLh~AA~~G~ 75 (655)
.+|.|+||.|+..|+.+.++.+|. .|+++|..+ + +.....+.+..|..|+||||+|+..|+
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLN-AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 568899999999998888877776 788888753 0 001111122234445555555555555
Q ss_pred HHHHHHHHHcCCCccccccCCCC-ChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHH
Q 006236 76 VAVLKYVIETGKVNVNRACGSDG-FTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKR 154 (655)
Q Consensus 76 ~evvk~LL~~G~aDvN~~~d~~G-~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~e 154 (655)
.+++++|+++| ++++.. +..| .||||+|+..|+ .+++++|+++|+++... ..|.||||+|+. .++.+
T Consensus 108 ~~~v~~Ll~~g-a~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~------~g~~~ 175 (285)
T 3kea_A 108 MQTVKLFVKKN-WRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIK------NGHVD 175 (285)
T ss_dssp HHHHHHHHHHC-GGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHH------TTCHH
T ss_pred HHHHHHHHhcC-CCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHH------cChHH
Confidence 55555555554 555544 4444 455555555554 55555555554444111 144555555544 55566
Q ss_pred HHHHHHhCCCCCCcccccCCCC
Q 006236 155 AIELLLKGDHTIFEEEELVNIP 176 (655)
Q Consensus 155 ivelLL~~GAdin~~d~~g~tp 176 (655)
++++|+++|++++..|..|.+|
T Consensus 176 ~v~~Ll~~gad~n~~~~~g~t~ 197 (285)
T 3kea_A 176 MMILLLDYMTSTNTNNSLLFIP 197 (285)
T ss_dssp HHHHHHHHHHHTCTTCCCBCCT
T ss_pred HHHHHHHcCCCCCcccCCCCCh
Confidence 6666666666666666666655
No 87
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.79 E-value=1.9e-19 Score=161.25 Aligned_cols=110 Identities=23% Similarity=0.211 Sum_probs=103.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD 139 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh 139 (655)
+..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 467899999999999999999999999 999998 9999999999999999 99999999999999999999999999
Q ss_pred hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccc
Q 006236 140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL 180 (655)
Q Consensus 140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l 180 (655)
+|+. .++.+++++|+++|++++.+|.+|.+|+..+
T Consensus 79 ~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 79 SAVY------EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHH------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 9997 8999999999999999999999999998654
No 88
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.79 E-value=1.5e-19 Score=173.52 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=112.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.|.|+||.|+..|+.+.++.+|. |+++|..+ ..|+||||+|+..|+.+++++|+++| +++|...
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~ 106 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE--DRDVDAVD-------------ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRD 106 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCC
Confidence 56799999999999999988886 89999884 89999999999999999999999999 9999983
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhcc----------CCCCcChHHHHHHHHhC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM----------KSPLHSRKRAIELLLKG 162 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~----------~~~~~g~~eivelLL~~ 162 (655)
+..|+||||+|+..|+ .+++++|+++|++++.+|.+|.||||+|+... .+...+..+++++|.++
T Consensus 107 ~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 107 MRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp SSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 3899999999999999 99999999999999999999999999998621 11223556777777643
No 89
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=5.8e-19 Score=182.33 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=118.3
Q ss_pred chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCccccc
Q 006236 17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aDvN~~ 93 (655)
...|+.|+..+|.+.++.++. .|++++... .....|..|+||||+|+.. |+.+++++||++| +|+|..
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~ 201 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQ 201 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCC
T ss_pred hhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCcccc
Confidence 478999999999999988886 799876542 0122257899999999999 8999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF 167 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin 167 (655)
|..|+||||+|+..|+ .++|++||++|+|++.+|.+|.||||+|+. .++.+++++|+++|++..
T Consensus 202 -d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 202 -TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKR------LKHEHCEELLTQALSGRF 265 (278)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHTTCC
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCC
Confidence 9999999999999999 999999999999999999999999999997 899999999999988643
No 90
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=1.8e-19 Score=159.26 Aligned_cols=107 Identities=30% Similarity=0.342 Sum_probs=100.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD 139 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh 139 (655)
|.+|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 689999999999999999999999999 999998 9999999999999999 99999999999999999999999999
Q ss_pred hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236 140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV 177 (655)
Q Consensus 140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl 177 (655)
+|+. .++.+++++|+++|++++..+..+.+|.
T Consensus 81 ~A~~------~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKK------NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHT------TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHH------CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9987 8999999999999999999888877763
No 91
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=173.46 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=95.1
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
..|.|+|+.|+..|+.+.++.++. .|.+++... +..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 40 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 105 (240)
T 3eu9_A 40 KENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLI 105 (240)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHHHHHcC-CCCccc
Confidence 456788888888888877776665 777776653 344677777777777777777777776 777766
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccc-c
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE-L 172 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~-~ 172 (655)
+..|.||||+|+..|+ .+++++|++.|++++..|..|.||||+|+. .....+++++|++.|++++..+. .
T Consensus 106 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-----~~~~~~~~~~L~~~~~~~~~~~~~~ 176 (240)
T 3eu9_A 106 -DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAY-----RTHSVDPTRLLLTFNVSVNLGDKYH 176 (240)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-----HCCSSTTHHHHHHTTCCTTCCCTTT
T ss_pred -CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHH-----hCChHHHHHHHHhcCCCcchhhccC
Confidence 6677777777777776 777777777777777777777777777663 12234555566666666655554 5
Q ss_pred CCCCcc
Q 006236 173 VNIPVP 178 (655)
Q Consensus 173 g~tpl~ 178 (655)
|.+|+.
T Consensus 177 g~t~L~ 182 (240)
T 3eu9_A 177 KNTALH 182 (240)
T ss_dssp CCCHHH
T ss_pred CCcHHH
Confidence 555553
No 92
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.77 E-value=2.5e-19 Score=191.48 Aligned_cols=146 Identities=17% Similarity=0.256 Sum_probs=130.4
Q ss_pred cCCchHHHHHHHhCCHHHHHHHH-------HhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 006236 14 YNKSSILLELSASDDISAFKREI-------EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETG 86 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL-------~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G 86 (655)
..|.|+||+||..|+.+.++.+| .+.|+++|..+ .+|.||||+|+..|+.++|++||+.|
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d-------------~~g~TpL~~A~~~g~~~iv~~Ll~~g 189 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-------------CDENTPLMLAVLARRRRLVAYLMKAG 189 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC-------------CCCCCHHHHHHHcChHHHHHHHHHCC
Confidence 46889999999999987766655 36899999984 89999999999999999999999999
Q ss_pred CCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC---CCCcccCCCCCCccchhhhccCCCCcC---hHHHHHHHH
Q 006236 87 KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS---ADVNCVDVYGNKPVDLIPVAMKSPLHS---RKRAIELLL 160 (655)
Q Consensus 87 ~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G---ADvn~~D~~G~TPLhlAa~~~~~~~~g---~~eivelLL 160 (655)
++++.. +..|.||||+|+..|+ .+++++|++.+ ++++..|..|.||||+|+. .+ +.+++++|+
T Consensus 190 -a~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~------~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 190 -ADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH------NEGRDQVASAKLLV 258 (373)
T ss_dssp -CCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH------SCSTTHHHHHHHHH
T ss_pred -CCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHH------hCCcchHHHHHHHH
Confidence 999998 9999999999999999 99999999998 8999999999999999987 44 899999999
Q ss_pred hCCCCCCc--------ccccCCCCccccccc
Q 006236 161 KGDHTIFE--------EEELVNIPVPQLSKD 183 (655)
Q Consensus 161 ~~GAdin~--------~d~~g~tpl~~l~~~ 183 (655)
++|++++. .|..|.+++..+...
T Consensus 259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~ 289 (373)
T 2fo1_E 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289 (373)
T ss_dssp HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred HCCCCcccccccccCcccccCCCHHHHHHHh
Confidence 99999986 456788888655443
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=7.2e-19 Score=177.21 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=117.8
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
.|.|+||.|+..|+.+.++.+|. |+++|..+ ..|+||||+|+..|+.++|++||++| +++|...
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~ 107 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE--DRDVDAVD-------------ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRD 107 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBC-------------TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcC-------------CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCC
Confidence 56799999999999998888886 89999884 88999999999999999999999999 9999983
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc----------cCCCCcChHHHHHHHHhCCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA----------MKSPLHSRKRAIELLLKGDH 164 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~----------~~~~~~g~~eivelLL~~GA 164 (655)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+.. +.++..++.+++++|++++.
T Consensus 108 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 108 MRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp SSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 3889999999999999 9999999999999999999999999999741 11223678899999998765
Q ss_pred CCC
Q 006236 165 TIF 167 (655)
Q Consensus 165 din 167 (655)
+..
T Consensus 185 ~~~ 187 (244)
T 3ui2_A 185 EYA 187 (244)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.76 E-value=6.1e-19 Score=160.91 Aligned_cols=112 Identities=27% Similarity=0.357 Sum_probs=105.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD 139 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh 139 (655)
...+.||||+||..|+.+++++|++.| +++|.. +..|.||||+|+..|+ .+++++|+++|++++.+|.+|.||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANG-ADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 466899999999999999999999999 999998 9999999999999999 99999999999999999999999999
Q ss_pred hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
+|+. .++.+++++|+++|++++..|.+|.+++..+..
T Consensus 86 ~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~ 122 (136)
T 2jab_A 86 LAAF------IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122 (136)
T ss_dssp HHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHH------cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH
Confidence 9997 899999999999999999999999999865543
No 95
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=1.1e-18 Score=187.96 Aligned_cols=127 Identities=24% Similarity=0.352 Sum_probs=114.8
Q ss_pred CchHHHHHHHh-CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 16 KSSILLELSAS-DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 16 g~s~LL~AAa~-gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
+.++||.|+.. ++.+.++.+|. .|+++|..+ .+.+|.||||+|+..|+.++|++||++| +|+|..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~- 264 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQNG-ANVNQA- 264 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred CCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCC-
Confidence 45678888888 88888888876 999999873 1278999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT 165 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd 165 (655)
|..|+||||+|+..|+ .++|++||++|++++.+|.+|.||||+|+. .++.+++++|+..+..
T Consensus 265 d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~------~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 265 DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAME------TANADIVTLLRLAKMR 326 (368)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHH------CCCHHHHHHHHHcCCC
Confidence 9999999999999999 999999999999999999999999999997 8999999999987643
No 96
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=173.22 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=109.1
Q ss_pred HHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHH
Q 006236 36 IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE 115 (655)
Q Consensus 36 L~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~e 115 (655)
|++.|++++..+ ..+..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+..|+ .+
T Consensus 4 ll~~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-d~~g~tpLh~A~~~g~---~~ 68 (229)
T 2vge_A 4 VLRKAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQP-NEEGITALHNAICGAN---YS 68 (229)
T ss_dssp ------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCC-CTTSCCHHHHHHHTTC---HH
T ss_pred hhccCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCC-CCCCCCHHHHHHHcCC---HH
Confidence 344788877653 23577899999999999999999999999 999998 9999999999999999 99
Q ss_pred HHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc-ccCCCCcccc
Q 006236 116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE-ELVNIPVPQL 180 (655)
Q Consensus 116 iVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d-~~g~tpl~~l 180 (655)
+|++|++.|+++|.+|..|.||||+|+. .++.+++++|+++|++++..+ .+|.+|+..+
T Consensus 69 ~v~~Ll~~ga~~n~~d~~g~tpLh~A~~------~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 69 IVDFLITAGANVNSPDSHGWTPLHCAAS------CNDTVICMALVQHGAAIFATTLSDGATAFEKC 128 (229)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence 9999999999999999999999999997 899999999999999999986 5999998665
No 97
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=178.74 Aligned_cols=125 Identities=25% Similarity=0.299 Sum_probs=113.1
Q ss_pred cCCchHHHHHH-----HhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 006236 14 YNKSSILLELS-----ASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKV 88 (655)
Q Consensus 14 ~~g~s~LL~AA-----a~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~a 88 (655)
..|.|+|+.|+ ..++.+.++.++. .|.+++.. +..|+||||+|+..|+.+++++||+.| +
T Consensus 143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a 207 (276)
T 4hbd_A 143 RAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKA-------------SQAGQTALMLAVSHGRVDVVKALLACE-A 207 (276)
T ss_dssp TTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCC-------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred CCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHhCC-C
Confidence 56889999998 5566766666665 78877776 488999999999999999999999999 9
Q ss_pred ccccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236 89 NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD 163 (655)
Q Consensus 89 DvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G 163 (655)
|+|.. |..|+||||+|+..|+ .++|++||+ .|+|++.+|.+|.||||+|+. .++.+++++|++++
T Consensus 208 d~n~~-d~~G~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~------~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 208 DVNVQ-DDDGSTALMCACEHGH---KEIAGLLLAVPSCDISLTDRDGSTALMVALD------AGQSEIASMLYSRM 273 (276)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHC
T ss_pred CCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH------cCCHHHHHHHHhcc
Confidence 99999 9999999999999999 999999999 899999999999999999997 89999999999864
No 98
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.75 E-value=9.6e-19 Score=180.13 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=107.2
Q ss_pred CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEE-RTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G-~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
|.|+||.|+..|+.+.++.+|. .|++++.. +..| .||||+|+..|+.+++++|+++| +++..
T Consensus 95 g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-- 157 (285)
T 3kea_A 95 GNTALYYAVDSGNMQTVKLFVK-KNWRLMFY-------------GKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFD-- 157 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC-------------SSSGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCC--
T ss_pred CCcHHHHHHHcCCHHHHHHHHh-cCCCCCcc-------------CCCCCCCHHHHHHHcCCHHHHHHHHhCC-Ccccc--
Confidence 4455555555555554444443 35555544 5788 89999999999999999999999 77742
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCc-cchhhhccCCCCcChHHHHHHHHhCCCCCCcccc
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP-VDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE 171 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TP-LhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~ 171 (655)
...|.||||+|+..|+ .+++++|+++|++++.+|..|.|| ||+|+. .++.+++++|+++|++++..+.
T Consensus 158 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~------~~~~~~v~~Ll~~gad~~~~~~ 226 (285)
T 3kea_A 158 LAILLSCIHITIKNGH---VDMMILLLDYMTSTNTNNSLLFIPDIKLAID------NKDIEMLQALFKYDINIYSANL 226 (285)
T ss_dssp CSTHHHHHHHHHHTTC---HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH------HTCHHHHHHHTTSCBCSTTTTG
T ss_pred ccCCccHHHHHHHcCh---HHHHHHHHHcCCCCCcccCCCCChHHHHHHH------cCCHHHHHHHHHcCCCCCCCCh
Confidence 2389999999999999 999999999999999999999998 999997 8999999999999999998764
No 99
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.75 E-value=3e-18 Score=151.67 Aligned_cols=109 Identities=35% Similarity=0.525 Sum_probs=103.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236 62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI 141 (655)
Q Consensus 62 ~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA 141 (655)
+|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 4899999999999999999999999 999998 9999999999999999 9999999999999999999999999999
Q ss_pred hhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 142 PVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 142 a~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
+. .++.+++++|+++|++++..|..|.+|+..+.
T Consensus 76 ~~------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 109 (126)
T 1n0r_A 76 AR------NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109 (126)
T ss_dssp HH------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HH------cChHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 97 89999999999999999999999999886554
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.73 E-value=2.5e-18 Score=169.22 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=106.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhC-CCCCcccCCCCCCcc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPV 138 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADvn~~D~~G~TPL 138 (655)
+..|.||||+||..|+.+++++||+.| +++|.. +..|+||||+|+..|+ .++|++|++. |++++.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHhCC-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHH
Confidence 567899999999999999999999999 999998 9999999999999999 9999999999 999999999999999
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
|+|+. .++.+++++||++|++++.+|.+|.+++..+..
T Consensus 145 ~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 182 (222)
T 3ehr_A 145 HAAAW------KGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182 (222)
T ss_dssp HHHHH------HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred HHHHH------cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence 99997 899999999999999999999999999865543
No 101
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.72 E-value=2e-18 Score=161.17 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=103.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCC-cc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNK-PV 138 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~T-PL 138 (655)
+..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+ .|+ .+++++|+++|++++.+|..|.| ||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAG-ANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 578999999999999999999999999 999998 999999999985 788 99999999999999999999999 99
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
|+|+. .++.+++++|+++|++++..|..|.+|+..+..
T Consensus 83 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 120 (156)
T 1bi7_B 83 HDAAR------EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120 (156)
T ss_dssp HHHHH------HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred HHHHH------CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 99997 899999999999999999999999999865543
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.72 E-value=2.1e-18 Score=165.46 Aligned_cols=111 Identities=24% Similarity=0.196 Sum_probs=104.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCcc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPV 138 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPL 138 (655)
+.+|.||||+|+..|+.+++++||+ + +++|.. +..|+||||+|+..|+ .+++++|+++|+++|.+| .+|+|||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 4678999999999999999999999 7 999998 9999999999999999 999999999999999998 8999999
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK 182 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~ 182 (655)
|+|+. .++.+++++|+++|++++.+|.+|.+|+..+..
T Consensus 115 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 115 HMAAG------YVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp HHHHH------TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHh------cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 99997 899999999999999999999999999866543
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.71 E-value=6.2e-17 Score=138.10 Aligned_cols=93 Identities=37% Similarity=0.485 Sum_probs=86.0
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC 94 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~ 94 (655)
+|.|+||.|+..|+.+.++.+|. .|+++|.++ .+|+||||+|+..|+.+++++|++.| ++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~- 64 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKD-------------KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK- 64 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence 47899999999999998887776 899999985 89999999999999999999999999 999998
Q ss_pred CCCCChHHHHHHHcCCCChHHHHHHHHhCCCC
Q 006236 95 GSDGFTALHCAVAGGANSSFEVVKLLLSASAD 126 (655)
Q Consensus 95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD 126 (655)
|..|.||||+|+..|+ .+++++|+++||+
T Consensus 65 d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 9999999999999999 9999999999986
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.70 E-value=1.8e-17 Score=146.27 Aligned_cols=106 Identities=29% Similarity=0.375 Sum_probs=97.0
Q ss_pred cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236 14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93 (655)
Q Consensus 14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~ 93 (655)
.+|.|+||.|+..++.+.++.+|. .|+++|..+ ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~ 71 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARS-------------KDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNAR 71 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCC-------------SSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCccc
Confidence 468899999999999998887775 899999884 88999999999999999999999999 999998
Q ss_pred cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCcc
Q 006236 94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138 (655)
Q Consensus 94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPL 138 (655)
+..|.||||+|+..|+ .+++++|+++|+++|.++..|.||-
T Consensus 72 -d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 72 -SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp -CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred -CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999 9999999999999999999999874
No 105
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.69 E-value=3.5e-18 Score=179.55 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=109.7
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCCCCC-CCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCC
Q 006236 20 LLELSASDDISAFKREIEEKGFDVDE-PSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDG 98 (655)
Q Consensus 20 LL~AAa~gd~~~vk~LL~~~GadIn~-~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G 98 (655)
+++++..+....++++|.+.|+++|. . |.+|+||||+||..|+.++|++||++| +|+|.. +..|
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~-------------d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~-d~~g 164 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPV-------------DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYG-DNMG 164 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCC-------------STTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBC-CTTC
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCccccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCc-CCCC
Confidence 45667777888888999889999999 6 489999999999999999999999999 999998 9999
Q ss_pred ChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC---------------
Q 006236 99 FTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG--------------- 162 (655)
Q Consensus 99 ~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~--------------- 162 (655)
+||||+|+..|+....++++.|++.+ ++++.+|..|+||||+|+. .....++.+++++|++.
T Consensus 165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~--~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII--TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242 (327)
T ss_dssp CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH--HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHH--HccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence 99999999988511136777888776 7899999999999999985 22336889999999987
Q ss_pred -----CCCCCcccccCCCCcccc
Q 006236 163 -----DHTIFEEEELVNIPVPQL 180 (655)
Q Consensus 163 -----GAdin~~d~~g~tpl~~l 180 (655)
|++++..+..|.+|+...
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a 265 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILEN 265 (327)
T ss_dssp C----------------CHHHHH
T ss_pred hhhcccCCcccccccCCChhHHH
Confidence 888888888888887443
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.69 E-value=1.7e-17 Score=167.22 Aligned_cols=110 Identities=25% Similarity=0.194 Sum_probs=103.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCcc
Q 006236 60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPV 138 (655)
Q Consensus 60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPL 138 (655)
+.+|.||||+|+..|+.+++++||+ + +++|.. +..|.||||+|+..|+ .++|++|+++|+++|.+| ..|.|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 3578999999999999999999999 7 999998 9999999999999999 999999999999999998 8899999
Q ss_pred chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS 181 (655)
Q Consensus 139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~ 181 (655)
|+|+. .++.+++++|+++|++++..|..|.+|+..+.
T Consensus 116 ~~A~~------~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 116 HMAAG------YVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp HHHHH------TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHH------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 99997 89999999999999999999999999986554
No 107
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=1.3e-16 Score=140.90 Aligned_cols=92 Identities=32% Similarity=0.454 Sum_probs=85.4
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCC
Q 006236 57 KKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNK 136 (655)
Q Consensus 57 ~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~T 136 (655)
...|.+|.||||+|+..|+.+++++|++.| +++|.. |..|.||||+|+..|+ .+++++|+++|++++.+|..|.|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT 92 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence 445789999999999999999999999999 999998 9999999999999999 99999999999999999999999
Q ss_pred ccchhhhccCCCCcChHHHHHHH
Q 006236 137 PVDLIPVAMKSPLHSRKRAIELL 159 (655)
Q Consensus 137 PLhlAa~~~~~~~~g~~eivelL 159 (655)
|||+|+. .++.+++++|
T Consensus 93 pl~~A~~------~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISID------NGNEDLAEIL 109 (110)
T ss_dssp HHHHHHH------HTCHHHHHHH
T ss_pred HHHHHHH------cCCHHHHHHh
Confidence 9999997 8999999987
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=158.69 Aligned_cols=105 Identities=20% Similarity=0.144 Sum_probs=90.8
Q ss_pred cCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236 14 YNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV 90 (655)
Q Consensus 14 ~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv 90 (655)
..|.|+||.|+.. ++.+.++.|| +.|++||.++ .+|+||||+|+..|+.+++++||+.| +|+
T Consensus 188 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d-------------~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~ 252 (301)
T 2b0o_E 188 APEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKA-------------ADGNTALHYAALYNQPDCLKLLLKGR-ALV 252 (301)
T ss_dssp SCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCC
T ss_pred CCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence 4678999999987 6666555555 4899999984 89999999999999999999999999 999
Q ss_pred ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236 91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143 (655)
Q Consensus 91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~ 143 (655)
+.+ |..|.||||+|+..|+ .+++++|+++|++ .|.||||+|+.
T Consensus 253 ~~~-d~~G~TpL~~A~~~~~---~~iv~~Ll~~ga~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 253 GTV-NEAGETALDIARKKHH---KECEELLEQAQAG------TFAFPLHVDYS 295 (301)
T ss_dssp SCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHHHH------TTSSCCC----
T ss_pred CCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhcCC------CCCChhHHHHh
Confidence 998 9999999999999999 9999999999886 58999999985
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.58 E-value=1.2e-15 Score=164.41 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=104.2
Q ss_pred CCCChHHHHHHHc-CCHHHHHHHHHcCCCccccccC--CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCc
Q 006236 61 FEERTPIMIAAMF-GSVAVLKYVIETGKVNVNRACG--SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137 (655)
Q Consensus 61 ~~G~TPLh~AA~~-G~~evvk~LL~~G~aDvN~~~d--~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TP 137 (655)
..+.|+||+|+.. |+++++++||+.| +|+|.. + ..|.||||+|+..|+ .++|++||++|+++|..|..|+||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHG-ADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcC-CCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCH
Confidence 3456899999999 9999999999999 999988 6 899999999999999 999999999999999999999999
Q ss_pred cchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236 138 VDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 138 LhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~ 183 (655)
||+|+. .++.+++++||++|++++..|.+|.+|+..+...
T Consensus 272 Lh~A~~------~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~ 311 (368)
T 3jue_A 272 LHHATI------LGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311 (368)
T ss_dssp HHHHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHH------cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence 999997 8999999999999999999999999998665443
No 110
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.56 E-value=2.8e-16 Score=169.78 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=103.3
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc---cc
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN---VN 91 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD---vN 91 (655)
++.|+||.||..|+.+.++.+|. .|+.....+ ..+..|.||||+||..|+.++|++|+++| +| ++
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~~----------~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~ 158 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCL-LLTSDEIVK----------VIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAM 158 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC------------CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHHH----------HhccCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccc
Confidence 45699999999999999988886 666221110 11346789999999999999999999999 76 23
Q ss_pred cccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcc--cCCCCCCccchhh-hccCCCCcChHHHHHHHHhCCC
Q 006236 92 RACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC--VDVYGNKPVDLIP-VAMKSPLHSRKRAIELLLKGDH 164 (655)
Q Consensus 92 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~--~D~~G~TPLhlAa-~~~~~~~~g~~eivelLL~~GA 164 (655)
.. +.+ .||||+|+..|+ .++|++|+++|++++. .|..|.||||+|+ . .|+.+++++|+++|+
T Consensus 159 i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~------~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 159 IQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVG------RGHHNVINFLLDCPV 223 (376)
T ss_dssp HS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST------TCCHHHHHHHTTSHH
T ss_pred cC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHH------CCCHHHHHHHHhCCC
Confidence 32 223 999999999999 9999999999999988 8999999999998 7 899999999998774
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.55 E-value=7.6e-15 Score=151.43 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=100.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccccc-----CCCCChHHHHHHHc---CCCChHHHHHHHHhCCCCCcccCCCC
Q 006236 63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC-----GSDGFTALHCAVAG---GANSSFEVVKLLLSASADVNCVDVYG 134 (655)
Q Consensus 63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~-----d~~G~TpLH~Aa~~---G~~~~~eiVklLL~~GADvn~~D~~G 134 (655)
..++|+.|+..|+++.++.+++.| ++++... +..|.||||+|+.. |+ .+++++|+++|+++|.+|.+|
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhh-cchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCC
Confidence 357899999999999999999999 8854321 78899999999999 66 999999999999999999999
Q ss_pred CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236 135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 135 ~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~ 183 (655)
+||||+|+. .++.+++++||++|++++.+|.+|.||+..+...
T Consensus 206 ~TpLh~A~~------~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 206 STALHYCCL------TDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248 (278)
T ss_dssp CCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHH------cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence 999999997 8999999999999999999999999999766543
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.54 E-value=8.9e-15 Score=162.70 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=101.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccc-----cCCCCChHHHHHHH---cCCCChHHHHHHHHhCCCCCcccCCCC
Q 006236 63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRA-----CGSDGFTALHCAVA---GGANSSFEVVKLLLSASADVNCVDVYG 134 (655)
Q Consensus 63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~-----~d~~G~TpLH~Aa~---~G~~~~~eiVklLL~~GADvn~~D~~G 134 (655)
..+.||.|+..|+.++++.||+.| +|+|.. .+..|.||||+|+. .|+ .++|++||++|+|+|.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHcCCCCCccCCCC
Confidence 347899999999999999999999 999854 26789999999977 777 999999999999999999999
Q ss_pred CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236 135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183 (655)
Q Consensus 135 ~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~ 183 (655)
+||||+|+. .++.+++++||++|++++..|.+|.+|+..+...
T Consensus 208 ~TpLh~A~~------~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 250 (497)
T 3lvq_E 208 NTALHYAAL------YNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250 (497)
T ss_dssp CCHHHHHTT------TTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred CcHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 999999986 8999999999999999999999999999665443
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.52 E-value=5.2e-14 Score=124.08 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=82.3
Q ss_pred cccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236 10 DGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN 89 (655)
Q Consensus 10 e~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD 89 (655)
...+.++.++||.|+..|+.+.++.+|. .|+++|..+ ..|+||||+|+..|+.+++++|+++| ++
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d-------------~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~ 82 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKD-------------KNGSTPLHLAARNGHLEVVKLLLEAG-AD 82 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 3344678899999999999999888886 799999884 89999999999999999999999999 99
Q ss_pred cccccCCCCChHHHHHHHcCCCChHHHHHHH
Q 006236 90 VNRACGSDGFTALHCAVAGGANSSFEVVKLL 120 (655)
Q Consensus 90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL 120 (655)
++.. +..|.||||+|+..|+ .+++++|
T Consensus 83 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 83 VXAQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp TTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred cccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 9998 9999999999999999 9999987
No 114
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.48 E-value=1.1e-15 Score=165.03 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=106.5
Q ss_pred CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc--
Q 006236 15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR-- 92 (655)
Q Consensus 15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~-- 92 (655)
.+.++|+.||..|+.+.++.||. +|++++..+ + + +.+ .||||+||..|+.++|++|+++| ++++.
T Consensus 127 ~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~------i--~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~ 193 (376)
T 2aja_A 127 ENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAM------I--Q--AEN-YHAFRLAAENGHLHVLNRLCELA-PTEATAM 193 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHH------H--S--HHH-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-CCCCccccc------c--C--CCC-CCHHHHHHHCCCHHHHHHHHHcC-Cccchhc
Confidence 45689999999999888887776 887632211 0 0 122 89999999999999999999999 99887
Q ss_pred ccCCCCChHHHHHH-HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccc
Q 006236 93 ACGSDGFTALHCAV-AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE 171 (655)
Q Consensus 93 ~~d~~G~TpLH~Aa-~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~ 171 (655)
. +..|.||||+|+ ..|+ .++|++|++.|++ |.||||+|+. .|+.+++++|+++|++++..+.
T Consensus 194 ~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~------~g~~evv~lL~~~ga~~~~~~~ 256 (376)
T 2aja_A 194 I-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFE------YGEKYVNPFIARHVNRLKEMHD 256 (376)
T ss_dssp H-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTT------TTTTTHHHHHHHHHHHHHHHHT
T ss_pred c-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHH------CCCHHHHHHHHhcCcccccccH
Confidence 6 788999999999 9999 9999999998753 8899999986 8999999999999999886653
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.97 E-value=1.8e-10 Score=96.50 Aligned_cols=61 Identities=36% Similarity=0.784 Sum_probs=29.2
Q ss_pred CCCCcCCCCCc-cCCCCCCCCcccccCCcccccc---CCcccccccccCC---CCCCCCC-CCCCCCCCC
Q 006236 247 YPYTCVPCPEF-RKGACPKGDGCEYAHGVFESWL---HPAQYRTRLCKDE---IGCARKV-CFFAHKPEE 308 (655)
Q Consensus 247 y~Ys~~~CP~~-rkg~C~~Gd~C~yaH~~~E~~~---HP~~ykt~~C~~~---~~C~~~~-C~faH~~~e 308 (655)
-.|++.+|+.| +.|.|.+|+.|.|+|+..|+.. || .|+|.+|+.| |.|++|. |.|+|+.+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 35889999999 5899999999999999998874 45 7999999976 8999885 999999876
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.61 E-value=5.4e-09 Score=86.30 Aligned_cols=61 Identities=26% Similarity=0.683 Sum_probs=56.3
Q ss_pred cCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCccc
Q 006236 251 CVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRP 311 (655)
Q Consensus 251 ~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~ 311 (655)
...|..|.+|.|.+|+ .|.|+|...+.+.++...++..|.+| |.|.++.|.|+|.+.+|+.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 3579999999999999 59999999999999888999999999 9999999999999998874
No 117
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2.8e-07 Score=80.94 Aligned_cols=62 Identities=27% Similarity=0.687 Sum_probs=55.6
Q ss_pred CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCccc
Q 006236 250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRP 311 (655)
Q Consensus 250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~ 311 (655)
+...|..|.+|.|.+|+ .|.|+|...+....+...++..|.+| |.|.++.|.|.|...+|+.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 34589999999999999 89999999888777777899999999 9999999999999988874
No 118
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.99 E-value=3.6e-06 Score=73.88 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=42.9
Q ss_pred CCCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCC-CCCCCCCCCC
Q 006236 248 PYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARK-VCFFAHKPEE 308 (655)
Q Consensus 248 ~Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~-~C~faH~~~e 308 (655)
.++...|..|..|.|.+|+.|.|+|+ +.+|++| |.|++| .|.|+|....
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 36778999999999999999999999 6789987 999987 5999998643
No 119
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=7.8e-06 Score=68.51 Aligned_cols=57 Identities=30% Similarity=0.497 Sum_probs=47.2
Q ss_pred CCCCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCCCCCCCCCCCCcc
Q 006236 247 YPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARKVCFFAHKPEELR 310 (655)
Q Consensus 247 y~Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 310 (655)
..++.+.|..|.+|.|.+|+.|.|+|...+ -++..|++| |.|.+..|.|+|...+.+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 446778999999999999999999999653 256679998 999966799999976544
No 120
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.4e-06 Score=69.58 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=17.3
Q ss_pred ccccccCC--CCCCCCC-CCCCCCCCCccc
Q 006236 285 RTRLCKDE--IGCARKV-CFFAHKPEELRP 311 (655)
Q Consensus 285 kt~~C~~~--~~C~~~~-C~faH~~~elr~ 311 (655)
++++|+.| |.|++|. |.|||+.+|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 44666665 6666663 666666666664
No 121
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=65.82 Aligned_cols=55 Identities=31% Similarity=0.540 Sum_probs=44.7
Q ss_pred CCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCCCCCCCCCCCCcc
Q 006236 249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARKVCFFAHKPEELR 310 (655)
Q Consensus 249 Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~~C~faH~~~elr 310 (655)
.+.+.|..|.+|.|.+|+.|.|+|.... .++..|++| |.|.+..|.|.|...+.|
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 5567899999999999999999998432 367789997 899997799999876543
No 122
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.37 E-value=5e-05 Score=64.53 Aligned_cols=66 Identities=30% Similarity=0.628 Sum_probs=51.1
Q ss_pred CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCcccCcCCCC
Q 006236 250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRPVYASTG 317 (655)
Q Consensus 250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~~~~~ 317 (655)
+...|..|.+|.|.+|| .|.|+|........ .-+...|.+| |.|.++.|.|.|.+.+|...+-.+|
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g 76 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING 76 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence 34589999999999997 99999996543221 2355679999 9999999999999988775444333
No 123
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.06 E-value=0.00011 Score=63.21 Aligned_cols=62 Identities=29% Similarity=0.629 Sum_probs=49.2
Q ss_pred CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCcccCc
Q 006236 250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRPVY 313 (655)
Q Consensus 250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~ 313 (655)
+...|++|.+|.|.+|+ .|.|+|........+ -+...|.+| |.|.+..|.|.|.+..|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~--~~~~vC~dflkG~C~r~~Cky~H~~~hl~~~~ 80 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQVEN--GRVIACFDSLKGRCSRENCKYLHPPTHLKTQL 80 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBT--TBEEBCHHHHHTCCCCTTCCSBCCCHHHHHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCccccccC--CceeeehhhhhCcCCCCCcceecCHHHHHHHH
Confidence 34589999999999998 999999865432222 256679999 999999999999988776433
No 124
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=5.9e-05 Score=61.43 Aligned_cols=40 Identities=30% Similarity=0.699 Sum_probs=33.5
Q ss_pred CCCCCccCCCCCCCCcccccCCcccccc---CCcccccccccC
Q 006236 252 VPCPEFRKGACPKGDGCEYAHGVFESWL---HPAQYRTRLCKD 291 (655)
Q Consensus 252 ~~CP~~rkg~C~~Gd~C~yaH~~~E~~~---HP~~ykt~~C~~ 291 (655)
.+|..|.+|.|++|+.|.||||..|+.. .+...++++|+-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 7999998899999999999999999854 355567777764
No 125
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.91 E-value=0.00043 Score=57.40 Aligned_cols=31 Identities=39% Similarity=0.714 Sum_probs=27.7
Q ss_pred cccccccccCC---CCCCCCC-CCCCCCCCCcccC
Q 006236 282 AQYRTRLCKDE---IGCARKV-CFFAHKPEELRPV 312 (655)
Q Consensus 282 ~~ykt~~C~~~---~~C~~~~-C~faH~~~elr~~ 312 (655)
..|||++|+.| |.|++|. |.|+|+.+|+|.+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~ 42 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 42 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence 47999999988 8899885 9999999999975
No 126
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.67 E-value=0.084 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred ccccccccCC--CCCCCCC-CCCCCCCCCc
Q 006236 283 QYRTRLCKDE--IGCARKV-CFFAHKPEEL 309 (655)
Q Consensus 283 ~ykt~~C~~~--~~C~~~~-C~faH~~~el 309 (655)
-+|+.+|++| |.|.++. |.|+|.....
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~ 36 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT 36 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT
T ss_pred CCcceeCHhHccCcCCCCCCCCCccccccC
Confidence 4799999999 9999885 9999998764
No 127
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=89.56 E-value=0.17 Score=44.01 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred ccccccccCC--CCCCCCC-CCCCCC
Q 006236 283 QYRTRLCKDE--IGCARKV-CFFAHK 305 (655)
Q Consensus 283 ~ykt~~C~~~--~~C~~~~-C~faH~ 305 (655)
.+|+.+|++| |.|.+|. |.|+|.
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC
Confidence 4899999999 8999985 999999
No 128
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=88.65 E-value=0.16 Score=41.61 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCcccccccccCC--CCCCCC-CCCCCCCCCC
Q 006236 280 HPAQYRTRLCKDE--IGCARK-VCFFAHKPEE 308 (655)
Q Consensus 280 HP~~ykt~~C~~~--~~C~~~-~C~faH~~~e 308 (655)
|...+++..|++| |.|.+| .|.|+|..+.
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 3456789999999 999998 5999999764
No 129
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=88.36 E-value=0.14 Score=41.72 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.2
Q ss_pred ccccccCC--CCCCCC--CCCCCCCCCCcc
Q 006236 285 RTRLCKDE--IGCARK--VCFFAHKPEELR 310 (655)
Q Consensus 285 kt~~C~~~--~~C~~~--~C~faH~~~elr 310 (655)
|...|++| |.|.++ .|.|+|..++++
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~ 34 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTM 34 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCccccc
Confidence 45679999 999988 599999998865
No 130
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=85.30 E-value=0.17 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.751 Sum_probs=16.9
Q ss_pred cccccCCCCCCCCCCCCCCCCC
Q 006236 286 TRLCKDEIGCARKVCFFAHKPE 307 (655)
Q Consensus 286 t~~C~~~~~C~~~~C~faH~~~ 307 (655)
...|+++..|.+..|.|.|-..
T Consensus 52 ~~~Crf~~~C~n~~C~F~Hp~g 73 (80)
T 2lhn_A 52 NEDCRFGVNCKNIYCLFRHPPG 73 (80)
Confidence 3578888888887899988543
No 131
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=83.63 E-value=0.36 Score=36.55 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=17.8
Q ss_pred cccccccCC---CCCCCCC-CCCCCCCC
Q 006236 284 YRTRLCKDE---IGCARKV-CFFAHKPE 307 (655)
Q Consensus 284 ykt~~C~~~---~~C~~~~-C~faH~~~ 307 (655)
.++..|+.| |.|++|. |.|.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 567778877 8888774 88888764
No 132
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.27 E-value=0.3 Score=42.47 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=24.2
Q ss_pred ccccccccCC--CCCCCC--CCCCCCCCCCcc
Q 006236 283 QYRTRLCKDE--IGCARK--VCFFAHKPEELR 310 (655)
Q Consensus 283 ~ykt~~C~~~--~~C~~~--~C~faH~~~elr 310 (655)
-.|...|++| |.|.++ .|.|+|.+++++
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~ 48 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPADSTM 48 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCS
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCchhcc
Confidence 4577789999 999999 499999998875
No 133
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=82.45 E-value=0.65 Score=39.09 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=21.9
Q ss_pred cccccccCC--CCCCCC--CCCCCCCCCCc
Q 006236 284 YRTRLCKDE--IGCARK--VCFFAHKPEEL 309 (655)
Q Consensus 284 ykt~~C~~~--~~C~~~--~C~faH~~~el 309 (655)
.+...|++| |.|.++ .|.|+|.+..+
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~ 36 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSC 36 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTC
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCccc
Confidence 456679999 999998 79999998754
No 134
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=83.06 E-value=0.26 Score=41.28 Aligned_cols=37 Identities=30% Similarity=0.769 Sum_probs=29.0
Q ss_pred CCCCCcccccCCccccccCCcccccccccCCCCCCCCCCCCCCCCCCc
Q 006236 262 CPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEEL 309 (655)
Q Consensus 262 C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~~~C~~~~C~faH~~~el 309 (655)
|.+ ..|.|.|... ...|+++.+|.+..|.|+|-..+.
T Consensus 18 Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP~~~~ 54 (80)
T 2lhn_A 18 CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHPINED 54 (80)
Confidence 666 7899998631 348999999999889999974443
No 135
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=70.35 E-value=1.7 Score=37.09 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=21.8
Q ss_pred cccccccCC--CCCCCC--CCCCCCCCCCc
Q 006236 284 YRTRLCKDE--IGCARK--VCFFAHKPEEL 309 (655)
Q Consensus 284 ykt~~C~~~--~~C~~~--~C~faH~~~el 309 (655)
.+...|++| |.|.++ .|.|+|.++.+
T Consensus 15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 15 LTLEVCRQFQRGTCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp SEECBCHHHHHTCCCCCTTTSSSBCCCSSS
T ss_pred chhhhchHHhcCCCCCCCCCCCCcCCCccc
Confidence 456679999 999988 79999998764
No 136
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=57.81 E-value=2.5 Score=31.96 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=22.2
Q ss_pred CCcCCCCCcc-CCCCCCCCcccccCCc
Q 006236 249 YTCVPCPEFR-KGACPKGDGCEYAHGV 274 (655)
Q Consensus 249 Ys~~~CP~~r-kg~C~~Gd~C~yaH~~ 274 (655)
....+|..|. .|.|++|.+|.+.|++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 4567899886 5999999999999984
No 137
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=44.90 E-value=4.2 Score=40.74 Aligned_cols=21 Identities=48% Similarity=0.863 Sum_probs=19.7
Q ss_pred CCCCccCCCCCCCCcccccCC
Q 006236 253 PCPEFRKGACPKGDGCEYAHG 273 (655)
Q Consensus 253 ~CP~~rkg~C~~Gd~C~yaH~ 273 (655)
.|..|.+|.|.+|+.|.|.|.
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBS
T ss_pred EcCccccCCCCCCCCCCccCC
Confidence 799999999999999999996
No 138
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=32.65 E-value=9.3 Score=37.87 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCC-CCCCCCCC
Q 006236 285 RTRLCKDEIGCARKV-CFFAHKPE 307 (655)
Q Consensus 285 kt~~C~~~~~C~~~~-C~faH~~~ 307 (655)
+.++|.++..|+||. |-|.|.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPER 214 (223)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcccccCCcceecCCcc
Confidence 677899888999885 99998764
No 139
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=27.95 E-value=38 Score=33.51 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=32.6
Q ss_pred CcCCCCCccC-----CCCCCCCcccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCC
Q 006236 250 TCVPCPEFRK-----GACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEE 308 (655)
Q Consensus 250 s~~~CP~~rk-----g~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~e 308 (655)
-+++|..+ + |.|..++.|..-| .|+.| |.|++..|.=.|+..+
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH---------------IC~~Fl~G~C~f~~CkRsH~~~~ 199 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH---------------ICEHFTRGNCSYLNCLRSHNLMD 199 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC---------------SCHHHHTTCCCCSSCSSCCCTTS
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee---------------ccchhhcCCcCCCCccCccCccC
Confidence 56788888 5 4788888887665 48888 8888877888888644
No 140
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=23.54 E-value=17 Score=36.37 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.6
Q ss_pred ccccCC--CCCCCCC-CCCCCC
Q 006236 287 RLCKDE--IGCARKV-CFFAHK 305 (655)
Q Consensus 287 ~~C~~~--~~C~~~~-C~faH~ 305 (655)
..|.+| |.|.+|. |.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 379988 9999996 999996
No 141
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=21.06 E-value=41 Score=21.37 Aligned_cols=18 Identities=39% Similarity=0.920 Sum_probs=13.4
Q ss_pred ccccCCCCCCCC-CCCCCC
Q 006236 287 RLCKDEIGCARK-VCFFAH 304 (655)
Q Consensus 287 ~~C~~~~~C~~~-~C~faH 304 (655)
..|.+|.+|-|. +||...
T Consensus 5 gscn~fagcgyaivcfw~~ 23 (26)
T 1rpb_A 5 GSCNDFAGCGYAVVCFWXX 23 (26)
T ss_dssp SSBCSSSSSCBBSSCCC--
T ss_pred ecccCcCCCceEEEEEEee
Confidence 469999999988 499764
Done!