Query 006237
Match_columns 655
No_of_seqs 322 out of 1030
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 19:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.7 1.8E-18 6.2E-23 150.8 7.1 61 405-465 10-70 (89)
2 2dmn_A Homeobox protein TGIF2L 99.7 1.8E-18 6.1E-23 147.4 6.7 65 399-463 6-70 (83)
3 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.6E-22 138.4 7.2 66 399-464 6-71 (73)
4 3k2a_A Homeobox protein MEIS2; 99.7 1.4E-17 5E-22 136.7 6.0 62 405-466 3-64 (67)
5 1du6_A PBX1, homeobox protein 99.7 8.6E-17 3E-21 129.6 7.2 62 400-461 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.7 1.3E-16 4.3E-21 135.8 7.1 64 401-464 2-65 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 2.3E-16 8E-21 130.3 7.4 63 401-463 2-64 (73)
8 1k61_A Mating-type protein alp 99.6 4.4E-16 1.5E-20 124.0 6.9 58 404-461 2-59 (60)
9 1le8_B Mating-type protein alp 99.6 4E-16 1.4E-20 132.6 6.8 62 403-464 5-66 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 8.8E-16 3E-20 131.2 7.5 61 399-459 26-86 (87)
11 2ecc_A Homeobox and leucine zi 99.5 1.9E-14 6.6E-19 122.2 6.8 59 402-463 5-63 (76)
12 1akh_A Protein (mating-type pr 99.5 3.3E-14 1.1E-18 113.4 6.3 57 400-459 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.5 4.8E-14 1.6E-18 114.4 7.1 61 399-462 2-62 (66)
14 2dmu_A Homeobox protein goosec 99.4 1.3E-13 4.4E-18 113.0 7.5 61 399-462 6-66 (70)
15 2cra_A Homeobox protein HOX-B1 99.4 1.5E-13 5.1E-18 112.8 7.8 61 399-462 6-66 (70)
16 2da4_A Hypothetical protein DK 99.4 3.9E-14 1.3E-18 119.1 4.0 63 399-461 7-70 (80)
17 2da2_A Alpha-fetoprotein enhan 99.4 1.9E-13 6.6E-18 111.8 7.7 61 399-462 6-66 (70)
18 2hdd_A Protein (engrailed home 99.4 1.4E-13 4.7E-18 110.1 6.6 58 400-460 3-60 (61)
19 2e1o_A Homeobox protein PRH; D 99.4 1.9E-13 6.5E-18 112.2 7.5 60 399-461 6-65 (70)
20 1ig7_A Homeotic protein MSX-1; 99.4 1.9E-13 6.5E-18 107.9 7.0 57 401-460 1-57 (58)
21 2djn_A Homeobox protein DLX-5; 99.4 1.7E-13 5.7E-18 112.5 6.7 60 399-461 6-65 (70)
22 2dmq_A LIM/homeobox protein LH 99.4 2.5E-13 8.7E-18 113.8 7.8 61 399-462 6-66 (80)
23 2da3_A Alpha-fetoprotein enhan 99.4 1.7E-13 6E-18 114.4 6.7 60 399-461 16-75 (80)
24 2da1_A Alpha-fetoprotein enhan 99.4 1.7E-13 5.7E-18 112.2 6.4 60 399-461 6-65 (70)
25 1jgg_A Segmentation protein EV 99.4 2.3E-13 7.8E-18 108.5 6.8 58 401-461 2-59 (60)
26 2h1k_A IPF-1, pancreatic and d 99.4 2.4E-13 8.1E-18 109.5 6.9 59 400-461 3-61 (63)
27 2dmt_A Homeobox protein BARH-l 99.4 3.4E-13 1.2E-17 113.5 7.9 61 399-462 16-76 (80)
28 2vi6_A Homeobox protein nanog; 99.4 3E-13 1E-17 108.4 6.8 58 400-460 3-60 (62)
29 1fjl_A Paired protein; DNA-bin 99.4 3.6E-13 1.2E-17 113.4 7.5 61 399-462 17-77 (81)
30 2k40_A Homeobox expressed in E 99.4 2.5E-13 8.7E-18 110.4 6.3 59 401-462 2-60 (67)
31 3rkq_A Homeobox protein NKX-2. 99.4 4.5E-13 1.6E-17 105.0 6.8 56 401-459 3-58 (58)
32 1nk2_P Homeobox protein VND; h 99.4 6.3E-13 2.2E-17 111.1 8.0 61 399-462 8-68 (77)
33 2l7z_A Homeobox protein HOX-A1 99.4 5.2E-13 1.8E-17 110.7 7.4 61 399-462 6-66 (73)
34 2dms_A Homeobox protein OTX2; 99.4 5E-13 1.7E-17 112.3 7.4 60 399-461 6-65 (80)
35 2cue_A Paired box protein PAX6 99.4 5.9E-13 2E-17 112.0 7.6 61 399-462 6-66 (80)
36 2dn0_A Zinc fingers and homeob 99.4 6.1E-13 2.1E-17 111.0 7.1 60 399-461 7-66 (76)
37 3a02_A Homeobox protein arista 99.4 6.3E-13 2.1E-17 105.9 6.6 55 404-461 3-57 (60)
38 1zq3_P PRD-4, homeotic bicoid 99.4 5.9E-13 2E-17 108.8 6.6 59 400-461 2-60 (68)
39 1ahd_P Antennapedia protein mu 99.4 5.4E-13 1.9E-17 109.2 6.1 59 400-461 2-60 (68)
40 1ftt_A TTF-1 HD, thyroid trans 99.4 9.3E-13 3.2E-17 107.7 7.0 59 401-462 3-61 (68)
41 1puf_A HOX-1.7, homeobox prote 99.4 1.3E-12 4.4E-17 109.2 8.0 61 399-462 12-72 (77)
42 2kt0_A Nanog, homeobox protein 99.4 1.2E-12 4E-17 110.6 7.7 60 399-461 21-80 (84)
43 1wh5_A ZF-HD homeobox family p 99.4 9.5E-13 3.2E-17 111.7 7.1 62 399-460 16-78 (80)
44 1yz8_P Pituitary homeobox 2; D 99.4 3E-13 1E-17 110.4 3.7 60 400-462 3-62 (68)
45 2m0c_A Homeobox protein arista 99.3 1.5E-12 5.2E-17 107.3 7.6 60 399-461 8-67 (75)
46 1b8i_A Ultrabithorax, protein 99.3 1.3E-12 4.5E-17 110.4 6.5 60 400-462 20-79 (81)
47 2hi3_A Homeodomain-only protei 99.3 1.7E-12 5.7E-17 107.5 7.0 59 401-461 3-61 (73)
48 3a01_A Homeodomain-containing 99.3 9.2E-13 3.1E-17 114.3 5.7 62 399-463 16-77 (93)
49 2ly9_A Zinc fingers and homeob 99.3 2.7E-12 9.1E-17 106.1 7.7 59 400-461 6-64 (74)
50 3nar_A ZHX1, zinc fingers and 99.3 2.4E-12 8.3E-17 112.0 7.8 66 400-468 25-90 (96)
51 2da5_A Zinc fingers and homeob 99.3 2.2E-12 7.6E-17 107.6 7.3 57 402-461 9-65 (75)
52 1uhs_A HOP, homeodomain only p 99.3 2.2E-12 7.4E-17 106.5 6.9 58 402-461 3-60 (72)
53 3a03_A T-cell leukemia homeobo 99.3 1.8E-12 6.2E-17 102.3 6.1 53 406-461 3-55 (56)
54 2cuf_A FLJ21616 protein; homeo 99.3 2.1E-12 7.2E-17 112.0 7.0 61 399-462 6-81 (95)
55 3nau_A Zinc fingers and homeob 99.3 2.1E-12 7.1E-17 107.3 5.8 56 405-463 9-64 (66)
56 2d5v_A Hepatocyte nuclear fact 99.3 2.5E-12 8.5E-17 121.1 7.0 61 399-462 96-156 (164)
57 3d1n_I POU domain, class 6, tr 99.3 3.2E-12 1.1E-16 119.3 7.7 59 399-460 92-150 (151)
58 2r5y_A Homeotic protein sex co 99.3 2.3E-12 7.7E-17 110.2 5.9 60 399-461 27-86 (88)
59 2ecb_A Zinc fingers and homeob 99.3 3.6E-12 1.2E-16 110.9 6.8 56 403-461 14-69 (89)
60 1b72_A Protein (homeobox prote 99.3 4E-12 1.4E-16 110.7 6.0 60 399-461 33-92 (97)
61 1wh7_A ZF-HD homeobox family p 99.3 5E-12 1.7E-16 107.6 5.8 61 399-460 16-78 (80)
62 2dmp_A Zinc fingers and homeob 99.2 9.4E-12 3.2E-16 107.3 6.9 55 403-460 16-70 (89)
63 1au7_A Protein PIT-1, GHF-1; c 99.2 1.7E-11 5.8E-16 114.4 7.2 60 399-461 86-145 (146)
64 1e3o_C Octamer-binding transcr 99.2 1.8E-11 6.3E-16 115.5 7.0 60 399-461 100-159 (160)
65 2e19_A Transcription factor 8; 99.2 2.3E-11 8E-16 99.3 6.6 54 404-460 7-60 (64)
66 2cqx_A LAG1 longevity assuranc 99.2 1.4E-11 4.7E-16 102.6 4.9 59 401-462 9-68 (72)
67 2xsd_C POU domain, class 3, tr 99.2 2E-11 6.8E-16 116.1 6.4 61 399-462 98-158 (164)
68 2da6_A Hepatocyte nuclear fact 99.2 3.9E-11 1.3E-15 107.1 7.5 61 399-462 5-86 (102)
69 2l9r_A Homeobox protein NKX-3. 99.1 5E-11 1.7E-15 99.1 6.4 54 406-462 10-63 (69)
70 1wi3_A DNA-binding protein SAT 99.1 9.6E-11 3.3E-15 98.2 7.3 61 399-461 6-66 (71)
71 3l1p_A POU domain, class 5, tr 99.1 4E-11 1.4E-15 112.7 5.0 60 399-461 95-154 (155)
72 1lfb_A Liver transcription fac 99.1 7.6E-11 2.6E-15 104.2 5.6 60 400-462 9-89 (99)
73 1x2m_A LAG1 longevity assuranc 99.0 1.7E-10 5.9E-15 95.0 5.3 51 409-461 9-59 (64)
74 1mh3_A Maltose binding-A1 home 98.9 7.6E-10 2.6E-14 113.5 5.7 53 404-459 369-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.9 1.3E-09 4.5E-14 108.7 6.7 57 400-459 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 98.9 8.9E-10 3E-14 107.8 3.8 58 400-460 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.8 7.4E-09 2.5E-13 87.1 6.0 46 409-457 14-59 (71)
78 2nzz_A Penetratin conjugated G 96.2 0.0008 2.7E-08 50.2 0.1 20 445-464 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.0 0.092 3.1E-06 44.2 3.0 44 407-453 13-56 (70)
80 1tty_A Sigma-A, RNA polymerase 72.7 4.6 0.00016 33.4 4.9 53 406-466 18-74 (87)
81 3hug_A RNA polymerase sigma fa 72.4 3.9 0.00013 34.0 4.4 49 406-462 37-85 (92)
82 1hlv_A CENP-B, major centromer 69.7 10 0.00034 32.9 6.6 50 402-457 3-52 (131)
83 1ku3_A Sigma factor SIGA; heli 67.8 4.5 0.00016 32.1 3.7 50 406-463 10-64 (73)
84 2glo_A Brinker CG9653-PA; prot 65.8 8.7 0.0003 29.5 4.8 46 404-453 3-48 (59)
85 2elh_A CG11849-PA, LD40883P; s 63.3 9.2 0.00031 31.7 4.8 45 400-452 16-60 (87)
86 3mzy_A RNA polymerase sigma-H 63.1 7 0.00024 34.0 4.3 48 406-462 109-156 (164)
87 2o8x_A Probable RNA polymerase 62.4 6.9 0.00024 30.1 3.7 49 406-462 15-63 (70)
88 2p7v_B Sigma-70, RNA polymeras 60.3 5.9 0.0002 31.0 3.0 50 406-463 5-58 (68)
89 3t72_q RNA polymerase sigma fa 56.4 18 0.00063 31.3 5.7 60 406-469 19-78 (99)
90 1fse_A GERE; helix-turn-helix 55.3 21 0.00071 27.6 5.4 55 403-466 8-62 (74)
91 1s7o_A Hypothetical UPF0122 pr 54.3 19 0.00066 31.7 5.6 50 406-463 22-71 (113)
92 1tc3_C Protein (TC3 transposas 52.5 29 0.00098 24.0 5.3 43 405-455 4-46 (51)
93 1je8_A Nitrate/nitrite respons 50.5 16 0.00055 29.9 4.2 53 406-467 21-73 (82)
94 1rp3_A RNA polymerase sigma fa 49.8 13 0.00045 34.4 4.0 49 406-462 187-235 (239)
95 1x3u_A Transcriptional regulat 48.0 14 0.00049 29.1 3.4 52 407-467 17-68 (79)
96 1or7_A Sigma-24, RNA polymeras 46.9 16 0.00053 33.0 3.9 49 406-462 140-188 (194)
97 1xsv_A Hypothetical UPF0122 pr 45.9 24 0.00082 30.9 4.8 50 406-463 25-74 (113)
98 1p4w_A RCSB; solution structur 43.5 49 0.0017 28.4 6.3 55 404-467 32-86 (99)
99 2rnj_A Response regulator prot 41.5 39 0.0013 27.8 5.2 52 406-466 29-80 (91)
100 1iuf_A Centromere ABP1 protein 38.3 33 0.0011 31.0 4.7 52 400-454 5-60 (144)
101 3c57_A Two component transcrip 37.7 25 0.00085 29.5 3.5 49 405-462 26-74 (95)
102 2q1z_A RPOE, ECF SIGE; ECF sig 36.0 12 0.00042 33.5 1.3 48 406-461 135-182 (184)
103 1jko_C HIN recombinase, DNA-in 34.3 23 0.00079 25.0 2.4 41 406-454 5-45 (52)
104 3lsg_A Two-component response 32.8 61 0.0021 26.8 5.1 41 411-454 3-43 (103)
105 1l9z_H Sigma factor SIGA; heli 31.2 50 0.0017 35.9 5.3 54 406-463 375-429 (438)
106 3clo_A Transcriptional regulat 29.4 56 0.0019 31.8 5.0 55 405-468 196-250 (258)
107 2rn7_A IS629 ORFA; helix, all 28.5 1.1E+02 0.0036 25.7 6.0 49 404-453 4-53 (108)
108 2a6c_A Helix-turn-helix motif; 28.5 52 0.0018 26.4 3.8 27 433-459 34-60 (83)
109 2jn6_A Protein CGL2762, transp 28.0 64 0.0022 26.6 4.4 46 404-455 3-48 (97)
110 2jpc_A SSRB; DNA binding prote 27.3 52 0.0018 24.5 3.4 48 411-467 3-50 (61)
111 1wlx_A Alpha-actinin 4; three- 27.0 1.4E+02 0.0048 27.5 6.8 69 280-350 45-116 (129)
112 1l0o_C Sigma factor; bergerat 26.5 14 0.00047 34.2 0.0 46 406-459 198-243 (243)
113 3b7h_A Prophage LP1 protein 11 26.1 49 0.0017 25.5 3.1 23 433-455 23-45 (78)
114 2xi8_A Putative transcription 24.0 38 0.0013 25.0 2.1 23 433-455 17-39 (66)
115 3qq6_A HTH-type transcriptiona 23.6 55 0.0019 26.0 3.1 27 433-459 26-52 (78)
116 2r1j_L Repressor protein C2; p 23.6 40 0.0014 25.1 2.1 23 433-455 21-43 (68)
117 1zug_A Phage 434 CRO protein; 22.9 40 0.0014 25.3 2.1 24 433-456 19-42 (71)
118 3bd1_A CRO protein; transcript 22.5 44 0.0015 26.4 2.3 23 433-455 14-36 (79)
119 1hlv_A CENP-B, major centromer 22.1 2E+02 0.0067 24.6 6.6 57 401-458 67-130 (131)
120 3ulq_B Transcriptional regulat 21.2 1.3E+02 0.0043 25.2 5.0 53 404-465 27-79 (90)
121 2k27_A Paired box protein PAX- 21.1 2.1E+02 0.0072 25.4 6.8 50 404-456 81-137 (159)
122 2a6h_F RNA polymerase sigma fa 20.9 52 0.0018 35.1 3.1 53 406-462 360-413 (423)
123 1adr_A P22 C2 repressor; trans 20.7 48 0.0016 25.3 2.1 24 433-456 21-44 (76)
124 3bs3_A Putative DNA-binding pr 20.6 50 0.0017 25.3 2.2 23 433-455 26-48 (76)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=150.84 Aligned_cols=61 Identities=51% Similarity=0.865 Sum_probs=58.0
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 465 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee 465 (655)
.-||++++++|++||.+|..+|||++++|.+||++||||+.||+|||+|+|+|.|++++++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3599999999999999999999999999999999999999999999999999999988754
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=147.35 Aligned_cols=65 Identities=42% Similarity=0.784 Sum_probs=60.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
.++|+|+.|+++++.+|+.||.+|..||||+.++|..||..|||++.||.+||+|+|+|.|++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 44556667999999999999999999999999999999999999999999999999999998776
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=138.37 Aligned_cols=66 Identities=41% Similarity=0.724 Sum_probs=61.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 464 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 464 (655)
..+|+++.|+++++.+|+.||.+|..+|||+..+|..||..|||++.||.+||+|+|+|.|+++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 445666679999999999999999999999999999999999999999999999999999998763
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-17 Score=136.70 Aligned_cols=62 Identities=48% Similarity=0.940 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 466 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 466 (655)
.+||++++.+|+.||.+|..+|||+..+|..||..|||+..||++||+|+|+|.|++++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999987653
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=8.6e-17 Score=129.64 Aligned_cols=62 Identities=35% Similarity=0.646 Sum_probs=58.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.+|+++.|+++++.+|+.||.+|..+|||+..++..||..+||++.||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45667779999999999999999999999999999999999999999999999999999874
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.3e-16 Score=135.81 Aligned_cols=64 Identities=36% Similarity=0.687 Sum_probs=59.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 464 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 464 (655)
+|+|+.|+++++.+|+.||.+|..+|||+..+|..||..+||++.||.+||+|+|+|.|+.+.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4667789999999999999999999999999999999999999999999999999999988753
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=2.3e-16 Score=130.32 Aligned_cols=63 Identities=37% Similarity=0.691 Sum_probs=59.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
+|+++.|+++++.+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 567778999999999999999999999999999999999999999999999999999988653
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=4.4e-16 Score=124.05 Aligned_cols=58 Identities=26% Similarity=0.455 Sum_probs=55.3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+++|+++++.+|+.||..|+.+|||+..++..||..+||++.||.+||+|+|+|.|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 5679999999999999999999999999999999999999999999999999998763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.62 E-value=4e-16 Score=132.56 Aligned_cols=62 Identities=23% Similarity=0.429 Sum_probs=57.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006237 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 464 (655)
Q Consensus 403 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 464 (655)
++++|+.+++.+|+.||..|+.+|||+..++..||..|||+..||.+||+|+|+|.|+..+.
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34459999999999999999999999999999999999999999999999999999987653
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.60 E-value=8.8e-16 Score=131.15 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=56.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
.++|+++.|+++++.+|+.||..|+.+|||+..+|..||..|||++.||.+||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4455566799999999999999999999999999999999999999999999999999986
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.9e-14 Score=122.16 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=55.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 402 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
+++++|+++|+.+|+.||.. +|||+..+|.+||+.|||++.||.+||+|+|+|.|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999998 799999999999999999999999999999999988664
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.48 E-value=3.3e-14 Score=113.37 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
++|++..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4555667999999999999998 69999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.48 E-value=4.8e-14 Score=114.37 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=56.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
+++|+|..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 35677778999999999999998 79999999999999999999999999999999998754
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=113.02 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=55.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 45566777999999999999998 79999999999999999999999999999999998753
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=1.5e-13 Score=112.81 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=55.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45566677999999999999998 79999999999999999999999999999999998753
No 16
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.9e-14 Score=119.08 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEH-FLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH-~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+.+++.+|+.||..+ ..+|||+..++..||..+||++.||.+||+|+|+|.++.
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 345566669999999999999885 444999999999999999999999999999999998873
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=111.84 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 44566667999999999999998 79999999999999999999999999999999998743
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.43 E-value=1.4e-13 Score=110.10 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=51.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4566777999999999999998 799999999999999999999999999999999876
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.9e-13 Score=112.22 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
..+|++..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 45566777999999999999988 7999999999999999999999999999999999874
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.9e-13 Score=107.91 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=53.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356677999999999999998 799999999999999999999999999999999875
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=112.54 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 45566677999999999999987 7999999999999999999999999999999999874
No 22
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.5e-13 Score=113.76 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=56.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 45667777999999999999998 79999999999999999999999999999999998743
No 23
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=114.40 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45566667999999999999998 6999999999999999999999999999999999874
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=112.19 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 45666777999999999999998 7999999999999999999999999999999999874
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.42 E-value=2.3e-13 Score=108.48 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466777999999999999998 7999999999999999999999999999999998863
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.41 E-value=2.4e-13 Score=109.53 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4566777999999999999998 7999999999999999999999999999999999874
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=113.50 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.||..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 44566667999999999999998 79999999999999999999999999999999998753
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.40 E-value=3e-13 Score=108.45 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
++|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4566677999999999999998 799999999999999999999999999999999987
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.40 E-value=3.6e-13 Score=113.43 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|..|+..++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.|+..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 44566667999999999999988 79999999999999999999999999999999998743
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=110.41 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=54.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 566777999999999999987 89999999999999999999999999999999998754
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=105.03 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=51.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456667999999999999986 79999999999999999999999999999999865
No 32
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.39 E-value=6.3e-13 Score=111.11 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34555666999999999999998 79999999999999999999999999999999998754
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.39 E-value=5.2e-13 Score=110.74 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34566667999999999999998 79999999999999999999999999999999998753
No 34
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=5e-13 Score=112.28 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 45566667999999999999998 7999999999999999999999999999999998873
No 35
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=5.9e-13 Score=112.04 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=56.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 45566777999999999999987 79999999999999999999999999999999998854
No 36
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=110.96 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.+.+.|+.|+++++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34455677999999999999988 7999999999999999999999999999999999874
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.37 E-value=6.3e-13 Score=105.95 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 567999999999999988 7999999999999999999999999999999999874
No 38
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.37 E-value=5.9e-13 Score=108.84 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4566777999999999999987 7999999999999999999999999999999999874
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.36 E-value=5.4e-13 Score=109.23 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 3566677999999999999998 7999999999999999999999999999999999874
No 40
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.36 E-value=9.3e-13 Score=107.70 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456667999999999999998 79999999999999999999999999999999998753
No 41
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.36 E-value=1.3e-12 Score=109.23 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 34556667999999999999998 79999999999999999999999999999999998754
No 42
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=110.64 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566667999999999999988 7999999999999999999999999999999999874
No 43
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.35 E-value=9.5e-13 Score=111.70 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFE-HFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~e-H~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
.++|+|..|+.+++.+|+.+|.. +..+|||+..+|.+||..+||++.||.+||+|+|.|.++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44566667999999999999886 455799999999999999999999999999999999875
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.35 E-value=3e-13 Score=110.45 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4566777999999999999987 79999999999999999999999999999999988743
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=107.29 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=54.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 34555666999999999999998 7999999999999999999999999999999999874
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.33 E-value=1.3e-12 Score=110.44 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=53.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566667999999999999998 79999999999999999999999999999999998754
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-12 Score=107.53 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|..|+.+++.+|+.+|... +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3556679999999999999831 6999999999999999999999999999999999874
No 48
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.33 E-value=9.2e-13 Score=114.30 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=56.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34556667999999999999998 799999999999999999999999999999999988653
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.32 E-value=2.7e-12 Score=106.09 Aligned_cols=59 Identities=17% Similarity=0.411 Sum_probs=54.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+++.|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4566777999999999999998 7999999999999999999999999999999999874
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=111.98 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=58.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL 468 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~~ 468 (655)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++-+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~~ 90 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 90 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHHH
Confidence 4466777999999999999998 79999999999999999999999999999999999987766544
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=107.58 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 402 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+++++|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45566999999999999998 7999999999999999999999999999999998864
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=2.2e-12 Score=106.45 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=52.9
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 402 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
++++.|+.+++.+|+.+|.. .+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 45677999999999999973 16999999999999999999999999999999999874
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=102.27 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.|+++++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5899999999999998 7999999999999999999999999999999998873
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.1e-12 Score=112.03 Aligned_cols=61 Identities=18% Similarity=0.392 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------LSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------LS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|..|++.++.+|+.||.+ +|||+..+|+.||..++ |++.||.+||+|+|+|.|+..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 44566667999999999999999 79999999999999999 999999999999999998753
No 55
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=107.26 Aligned_cols=56 Identities=29% Similarity=0.548 Sum_probs=50.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
|+-+++++.+|+.+|.. +|||+..++.+||+.|||++.||.+||+|+|.|+|+..+
T Consensus 9 ~~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 9 RKKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp --CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 33489999999999999 799999999999999999999999999999999987543
No 56
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.30 E-value=2.5e-12 Score=121.10 Aligned_cols=61 Identities=31% Similarity=0.384 Sum_probs=53.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++|+|..|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 45666777999999999999999 69999999999999999999999999999999998753
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=119.32 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=54.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
+++|+|..|+..++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|+|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455566999999999999998 799999999999999999999999999999999986
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.29 E-value=2.3e-12 Score=110.25 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=52.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45566777999999999999987 7999999999999999999999999999999998874
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=3.6e-12 Score=110.93 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=51.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 403 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+.+.|+.+++.+|+.||.. ++||+..+|.+||..|||++.||.+||+|+|+|.++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 3457999999999999998 7999999999999999999999999999999998763
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=4e-12 Score=110.69 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=53.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45566777999999999999987 7999999999999999999999999999999998874
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.25 E-value=5e-12 Score=107.60 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=54.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
.++|+|..|+.+++.+|+ -|.+++- +|||+..+|.+||..+||++.||.+||+|+|.|+++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 455666679999999999 5777544 799999999999999999999999999999999876
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.4e-12 Score=107.29 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=51.0
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 403 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
+.++|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.++
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 3445999999999999998 799999999999999999999999999999998765
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=1.7e-11 Score=114.35 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=53.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999999873
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.19 E-value=1.8e-11 Score=115.45 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
+++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|.|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999999874
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=99.26 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 460 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 460 (655)
+..+.++++.+|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 344679999999999987 799999999999999999999999999999999875
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=1.4e-11 Score=102.65 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 401 WRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.++++.++.+++.+|+..| .. ++||+..++..||+.+||++.||.+||+|+|.|.|+.+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3556678999999999999 65 79999999999999999999999999999999998753
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.17 E-value=2e-11 Score=116.07 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
+++|+|+.|+..++.+|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.||..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34556667999999999999998 79999999999999999999999999999999998854
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.9e-11 Score=107.13 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhHhhhhhhhhhh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQT---------------------GLSRSQVSNWFINARVR 457 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qT---------------------GLS~~QVsNWFiNaRrR 457 (655)
+++|+|..|++.++.+|+.+|.. +|||+..+|++||..+ .|++.+|.+||+|+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34566667999999999999998 7999999999999999 79999999999999999
Q ss_pred hchhh
Q 006237 458 LWKPM 462 (655)
Q Consensus 458 lkKp~ 462 (655)
.++..
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98754
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=5e-11 Score=99.13 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
-++..++..|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.|+..
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 3789999999999988 79999999999999999999999999999999998754
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=9.6e-11 Score=98.24 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|+.|+.+|..+|+..|.. .+|||+.++++.||.+|||++.+|..||+|+|--++.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 57788888999999999999998 25999999999999999999999999999999877643
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.11 E-value=4e-11 Score=112.74 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 399 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 45666667999999999999986 7999999999999999999999999999999998863
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.09 E-value=7.6e-11 Score=104.20 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhHhhhhhhhhhhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQ------------------TG---LSRSQVSNWFINARVRL 458 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~q------------------TG---LS~~QVsNWFiNaRrRl 458 (655)
.+|+|..|++.++.+|+.+|.. +|||+..+|++||.. +| |++.||.+||+|+|++.
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3455556999999999999988 799999999999999 88 99999999999999998
Q ss_pred chhh
Q 006237 459 WKPM 462 (655)
Q Consensus 459 kKp~ 462 (655)
++..
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 7654
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.04 E-value=1.7e-10 Score=95.04 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 409 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 409 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
..++.+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.|.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45689999999542 7999999999999999999999999999999998864
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.91 E-value=7.6e-10 Score=113.54 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
++.|.+.++..|+++|.. +|||+..+|.+||++|||+++||++||+|||+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 356899999999999988 69999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=108.73 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 458 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWFiNaRrRl 458 (655)
.+|.|..|++.++.+|+.||.. +|||+..+|++||..|+ ||+.||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4455556999999999999998 79999999999999988 89999999999999975
Q ss_pred c
Q 006237 459 W 459 (655)
Q Consensus 459 k 459 (655)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.86 E-value=8.9e-10 Score=107.85 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 458 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWFiNaRrRl 458 (655)
.+|+|..|++.++.+|+.+|.. +|||+..+|+.||..++ ||..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3455666999999999999999 69999999999999999 99999999999999998
Q ss_pred ch
Q 006237 459 WK 460 (655)
Q Consensus 459 kK 460 (655)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=7.4e-09 Score=87.10 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 006237 409 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 457 (655)
Q Consensus 409 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrR 457 (655)
++++.+|++.|.. ||||+.+++..||..+||++.+|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6889999999999 799999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.22 E-value=0.0008 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.5
Q ss_pred hhHhhhhhhhhhhhchhhHH
Q 006237 445 SQVSNWFINARVRLWKPMVE 464 (655)
Q Consensus 445 ~QVsNWFiNaRrRlkKp~ie 464 (655)
.||.+||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999997654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.97 E-value=0.092 Score=44.24 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 006237 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 453 (655)
Q Consensus 407 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiN 453 (655)
.++...++|+++|.+| -...+++...|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3556678999999995 7788999999999999999999999964
No 80
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=72.75 E-value=4.6 Score=33.41 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHH----HccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006237 406 GLPERSVSVLRAWLF----EHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 466 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~----eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 466 (655)
.||+..+.+|...|. + ++ .-.++|..+|+|...|.+|...+++++++.+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~----~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~ 74 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGK----PK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKY 74 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHH
T ss_pred hCCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 489999999988775 3 33 34689999999999999999999999988765443
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=72.44 E-value=3.9 Score=33.96 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.||+..+.+|.-.|.+ .| .-.++|+.+|++...|.++...+|+++++.+
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 33 3578999999999999999999999998755
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.70 E-value=10 Score=32.93 Aligned_cols=50 Identities=26% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 006237 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 457 (655)
Q Consensus 402 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrR 457 (655)
++|+.|+.+.+..+-.++.+ ++.++ ..++|+..|++...|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 35677999998777777766 46655 2368999999999999998766543
No 83
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.84 E-value=4.5 Score=32.13 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHH----HccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 006237 406 GLPERSVSVLRAWLF----EHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 463 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~----eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~i 463 (655)
.||+..+.+|...|. + ++ .-.++|..+|+|...|.+|...++.+++ ..+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~----~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR----EH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHHHhcccCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 489999999988775 3 33 3358999999999999999999999998 5543
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=65.80 E-value=8.7 Score=29.54 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=32.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 453 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiN 453 (655)
+++|+.+.+......+.. .++......++|+..|++...|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457888887666555443 2221223679999999999999999653
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.26 E-value=9.2 Score=31.71 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhh
Q 006237 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFI 452 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFi 452 (655)
.+++++.|+.+.+......+.. -+ -..++|+.+|+++..|.+|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3445667998886544444443 12 256889999999999999964
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.11 E-value=7 Score=33.96 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.||+..+.++. .+.+ .| .-.++|+.+|+|...|.++...+|+++++.+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999998 4444 44 3467999999999999999999999998755
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=62.44 E-value=6.9 Score=30.05 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.||+....+|...|.+ .+ .-.++|...|++...|.+|...+|.++++-+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999887665 33 2468999999999999999999999998754
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.33 E-value=5.9 Score=31.01 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHH----HHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 406 GLPERSVSVLRAWL----FEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf----~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
.||+..+.+|...| .+ .+ .-.++|+.+|+|...|.++...+++++++.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~----g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT----DY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998876 23 33 33679999999999999999999999987654
No 89
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=56.36 E-value=18 Score=31.35 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHHH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLE 469 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~~~ 469 (655)
.||+..+.++.-.|...-..++ .-.++|..+|+|...|.++...+++++++.+..+.+..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~ 78 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 78 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887752100133 45789999999999999999999999998876555543
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.29 E-value=21 Score=27.58 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006237 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 466 (655)
Q Consensus 403 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 466 (655)
....|++....+|..+ .+ .+ .-.++|+.+|++...|..+....+.+++.....+.
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 62 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 3456999999999774 33 34 34679999999999999999999999877654443
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=54.25 E-value=19 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
.||+..+.++...+.+ .+ .-.++|..+|+|...|.+|...+|.++++.+.
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887776 33 34789999999999999999999999887653
No 92
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.54 E-value=29 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaR 455 (655)
+.|+.+....+...+.+ .+ ...++|+.+|++...|..|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777776444444443 33 256899999999999999986543
No 93
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=50.51 E-value=16 Score=29.89 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 467 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 467 (655)
.|++..+++|.-+ .+ .+ .-.++|+.+|++...|.++..++|++++.....++.
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4899999999874 33 33 456899999999999999999999999877655444
No 94
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=49.82 E-value=13 Score=34.41 Aligned_cols=49 Identities=29% Similarity=0.285 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.||+..+.+|.-.|.+ .+ .-.++|+.+|+|...|..+...+|.++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999888765 44 3467999999999999999999999998754
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=48.01 E-value=14 Score=29.08 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006237 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 467 (655)
Q Consensus 407 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 467 (655)
||+....+|.-+ .+ .+ .-.++|..+|++...|.++...++.+++.....+..
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 788888888764 33 33 235899999999999999999999999877655543
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.91 E-value=16 Score=33.04 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
.||+..+.+|.-.+.+ .++ -.++|+.+|+|...|.++...+|+++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3899999999877665 332 367999999999999999999999998754
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.93 E-value=24 Score=30.86 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 463 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 463 (655)
.||+..+.++.-.+.+ .+ .-.++|..+|+|..-|.++...+|.++++-+.
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 33 34789999999999999999999999987653
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.52 E-value=49 Score=28.41 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 467 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 467 (655)
...||+..+++|.-++ + .+ .-.++|+.+|++...|.++..+.++|+.-....++.
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv 86 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALL 86 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4569999999997654 4 22 237899999999999999999999998655444433
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.48 E-value=39 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 466 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 466 (655)
.||+..+++|.-+ .+ .|.. .++|+.+|++...|.++..++|++++.....++
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4899999999774 44 3322 478999999999999999999999977654443
No 100
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=38.27 E-value=33 Score=30.96 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH-Hh--CCChhhHhhhhhhh
Q 006237 400 PWRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILAR-QT--GLSRSQVSNWFINA 454 (655)
Q Consensus 400 ~kR~rR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LA~-qT--GLS~~QVsNWFiNa 454 (655)
++++|+.|+-+++..+..|+ .+ ||-.+..+....|. +. +++...|+.|..|+
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46777889999999999998 44 57655443333222 67 78999999998663
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.66 E-value=25 Score=29.52 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 462 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 462 (655)
..|++..+++|.-. .+ .+ .-.++|+.+|++...|.++..++|++++...
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35999999999886 43 33 3378999999999999999999999987654
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=35.96 E-value=12 Score=33.54 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 461 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 461 (655)
.||+..+.+|.-.+.+. .+| .++|+.+|+|...|.++...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48999999998877763 233 4689999999999999999999998764
No 103
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.26 E-value=23 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 454 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNa 454 (655)
.++.+....+...+.+ .. ...++|+.+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4666655554444443 22 35689999999999999998643
No 104
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.82 E-value=61 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 006237 411 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 454 (655)
Q Consensus 411 qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNa 454 (655)
.++.+..|+.+|+..|-++ ..+||+.+|+++..+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4667888999987775455 4568999999999999998765
No 105
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=31.19 E-value=50 Score=35.86 Aligned_cols=54 Identities=17% Similarity=-0.008 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 463 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~i 463 (655)
.||+..+.||...|.-.-..++ .-.++|..+|+|+..|+.+...+++|++ +++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~ 429 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 429 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhh
Confidence 4899999999877651000133 5678999999999999999999999999 5543
No 106
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.44 E-value=56 Score=31.75 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 006237 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL 468 (655)
Q Consensus 405 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~~ 468 (655)
..||++.+++|.-. .+ .+ .-.++|+.+|++..-|.+...++|++++.....++..
T Consensus 196 ~~L~~~erevl~L~-~~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~ 250 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 250 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 46999999999886 44 33 3467999999999999999999999998876555443
No 107
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.48 E-value=1.1e+02 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChhhHhhhhhh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSD-VDKHILARQTGLSRSQVSNWFIN 453 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~-~EK~~LA~qTGLS~~QVsNWFiN 453 (655)
+++|+.+.+...-..+.++- .-|++. .....+|+.+|++...|.+|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 45688888654444443310 002232 35678999999999999999643
No 108
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=28.48 E-value=52 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 433 KHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
..+||+.+|++...|++|..+.+.+..
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~~~~ 60 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKIDLFS 60 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGGGCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 568999999999999999988764333
No 109
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=27.98 E-value=64 Score=26.59 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaR 455 (655)
++.|+.+.+...-..+... .. .....+|+.+|++...|.+|....+
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g----~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DG----ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GG----SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHc--CC----ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3568888765444444320 01 1367899999999999999975443
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.31 E-value=52 Score=24.55 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006237 411 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 467 (655)
Q Consensus 411 qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 467 (655)
..++|.- +.+ .++. .++|+.+|+++..|.++..+.+.+++.....+..
T Consensus 3 e~~vl~l-~~~----g~s~----~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~ 50 (61)
T 2jpc_A 3 ERQVLKL-IDE----GYTN----HGISEKLHISIKTVETHRMNMMRKLQVHKVTELL 50 (61)
T ss_dssp HHHHHHH-HHT----SCCS----HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHH-HHc----CCCH----HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4556655 444 3333 5899999999999999999999999776554443
No 111
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=27.00 E-value=1.4e+02 Score=27.53 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccCCCCCccCchhhhhhhhhhccccchhhHH
Q 006237 280 LEFMELQKRKTKLLSMLEEVDRRYRHY---CDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG 350 (655)
Q Consensus 280 le~~elQ~kK~kLL~mLEEVd~ry~qY---c~qmq~v~ssFe~vaG~gaA~~Ytslal~amSrhfr~Lrd~I~~ 350 (655)
-++++|+.+=.....-|.+.+.++++- ++++...+.++.. .|. ...|||.+....+.+....++.-|..
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~-~~~-~~npYT~it~~~l~~~W~~l~~li~~ 116 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI-KLS-GSNPYTTVTPQIINSKWEKVQQLVPK 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CCS-SSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCc-CCC-CCCCCccchHHHHHHHHHHHHHHHHH
Confidence 356777777777777788888777765 5777777788883 232 24599999888888888777766653
No 112
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.52 E-value=14 Score=34.18 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
.||+..+.+|.-.|.+ .+ .-.++|+.+|+|...|.++...+|+++|
T Consensus 198 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK----DQ----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 4888999998876655 22 3468999999999999999999998875
No 113
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=26.09 E-value=49 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaR 455 (655)
..+||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.01 E-value=38 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaR 455 (655)
..+||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 115
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.63 E-value=55 Score=26.02 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006237 433 KHILARQTGLSRSQVSNWFINARVRLW 459 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaRrRlk 459 (655)
..+||+.+|++...|+.|-.+.++...
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~ 52 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPS 52 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCB
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 457888888998889888877444443
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.58 E-value=40 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaR 455 (655)
..+||+.+|+++..|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 117
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.90 E-value=40 Score=25.35 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINARV 456 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaRr 456 (655)
..+||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999998766
No 118
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.49 E-value=44 Score=26.40 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaR 455 (655)
..+||+.+|++...|++|..+.|
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998866
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=22.13 E-value=2e+02 Score=24.59 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=37.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHH----HHHHHhCCChhhH-hhhhhhhhhhh
Q 006237 401 WRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKH----ILARQTGLSRSQV-SNWFINARVRL 458 (655)
Q Consensus 401 kR~rR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~----~LA~qTGLS~~QV-sNWFiNaRrRl 458 (655)
+|.++...++.-+.|-.|+.+... -| |+...-. .|+...|++.-.+ .+|+.+-.+|.
T Consensus 67 kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 67 KTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 445555788889999999987543 34 6665543 4566667764344 47888776664
No 120
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.20 E-value=1.3e+02 Score=25.23 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 465 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee 465 (655)
...|++..+++|.-.. + .| .-.++|..+|++...|.+...+.++|+.-....+
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~ 79 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTE 79 (90)
T ss_dssp --CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred ccCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 3469999999997665 4 33 4578999999999999999999999986544333
No 121
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.15 E-value=2.1e+02 Score=25.39 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=31.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHH-HHHH------hCCChhhHhhhhhhhhh
Q 006237 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHI-LARQ------TGLSRSQVSNWFINARV 456 (655)
Q Consensus 404 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~-LA~q------TGLS~~QVsNWFiNaRr 456 (655)
++.++.+....+.+++.+ +|--+..+... |... ..++...|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456788888888888877 46555544333 3222 14788889888765443
No 122
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=20.87 E-value=52 Score=35.11 Aligned_cols=53 Identities=17% Similarity=-0.000 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhh
Q 006237 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPM 462 (655)
Q Consensus 406 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~ 462 (655)
.||+..+.+|...|.-.-..+ -.-.++|..+|+|+..|..+...+++|++ .+.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~----~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~~ 413 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGRE----HTLEEVGAFFGVTRERIRQIENKALRKLKYHES 413 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC---------CHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhhh
Confidence 489999999987775100013 36678999999999999999999999998 443
No 123
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.72 E-value=48 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINARV 456 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaRr 456 (655)
..+||+.+|++...|++|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987543
No 124
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.60 E-value=50 Score=25.26 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006237 433 KHILARQTGLSRSQVSNWFINAR 455 (655)
Q Consensus 433 K~~LA~qTGLS~~QVsNWFiNaR 455 (655)
..+||+.+|+++..|+.|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
Done!