Query 006240
Match_columns 655
No_of_seqs 139 out of 243
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 20:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03200 Glyco_hydro_63: Manno 100.0 5E-177 1E-181 1515.6 56.1 563 78-654 22-609 (801)
2 KOG2161 Glucosidase I [Carbohy 100.0 1E-147 3E-152 1219.1 36.5 558 76-654 61-654 (849)
3 PRK10137 alpha-glucosidase; Pr 99.7 1.7E-16 3.8E-21 183.4 16.4 199 430-654 333-629 (786)
4 PLN02567 alpha,alpha-trehalase 99.5 1E-13 2.2E-18 156.5 12.6 190 437-654 150-379 (554)
5 PF01204 Trehalase: Trehalase; 98.7 8.8E-09 1.9E-13 116.0 4.9 190 437-654 126-358 (512)
6 PRK13271 treA trehalase; Provi 98.4 2E-06 4.3E-11 98.2 12.5 189 437-654 157-390 (569)
7 PRK13270 treF trehalase; Provi 98.2 2.1E-05 4.7E-10 89.5 15.0 185 437-654 169-400 (549)
8 PRK13272 treA trehalase; Provi 98.0 2.7E-05 5.9E-10 88.5 11.6 185 437-653 158-389 (542)
9 PF05592 Bac_rhamnosid: Bacter 97.9 0.00012 2.7E-09 81.8 13.8 156 456-653 167-324 (509)
10 PF06202 GDE_C: Amylo-alpha-1, 97.3 0.0048 1.1E-07 67.3 15.4 180 437-653 31-215 (370)
11 TIGR01561 gde_arch glycogen de 95.9 0.14 3E-06 59.5 14.5 159 453-653 308-474 (575)
12 KOG0602 Neutral trehalase [Car 95.3 0.033 7.2E-07 64.2 6.6 185 441-654 187-408 (600)
13 PF04685 DUF608: Protein of un 94.5 0.049 1.1E-06 59.7 5.2 157 457-651 32-214 (365)
14 COG3408 GDB1 Glycogen debranch 94.0 1.5 3.3E-05 51.7 16.3 177 440-650 284-464 (641)
15 TIGR01577 oligosac_amyl oligos 93.3 1.8 4E-05 50.4 15.4 167 439-653 292-463 (616)
16 COG1626 TreA Neutral trehalase 90.3 4 8.7E-05 47.2 13.1 185 440-654 172-405 (558)
17 PF08368 FAST_2: FAST kinase-l 25.5 60 0.0013 28.8 2.6 30 377-408 45-74 (93)
18 KOG0808 Carbon-nitrogen hydrol 23.8 41 0.00089 36.1 1.4 46 396-468 312-357 (387)
19 PF12273 RCR: Chitin synthesis 23.4 45 0.00098 31.3 1.5 20 52-71 3-22 (130)
20 COG4354 Predicted bile acid be 23.3 8.1E+02 0.017 29.6 11.5 94 446-557 368-486 (721)
No 1
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=100.00 E-value=5.2e-177 Score=1515.58 Aligned_cols=563 Identities=47% Similarity=0.824 Sum_probs=509.1
Q ss_pred CCCCccccCCCCCCcCCCcCcccCCCCccccccCCCCCcccccCCCCCCceeeecccccCCCC--ceeeeeeccCCCCcc
Q 006240 78 PETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGR--YHLRHVCQDSDELSK 155 (655)
Q Consensus 78 ~~~~rv~tp~~~pk~~~~~~~~~~~n~sl~WGtYRP~lYFGmR~R~P~sL~~GLMW~~~~~~~--~~lRH~ceq~D~l~~ 155 (655)
++++||+||+++|||++++++++.+|++|||||||||||||||||+|+||++||||+++++.+ ..|||+|||+|||.+
T Consensus 22 ~~~~r~~tp~~~~~~~~~~~~~~~~n~sl~WGtYRP~lYFGmr~R~p~sl~~GLMW~~~~~~~~~~~iRH~CeQ~D~L~~ 101 (801)
T PF03200_consen 22 SEAPRVNTPFPAPKVIDLSQFSGEHNDSLLWGTYRPNLYFGMRPRSPKSLLTGLMWFDQDSYDGQSKIRHTCEQGDGLAK 101 (801)
T ss_pred cccccccCcCCCccccChhhhccccCccccccccCCcceEeeccCCCCCceeeeeeeeccccccccceeEeeecCCCcCC
Confidence 569999999999999999999999999999999999999999999999999999999886543 459999999999999
Q ss_pred ccceeecCCcceeEEEEeCCeeEEEEEeecCCCCCCCCCCceEEEEeEecCccccCCCCcceEEEEEEecCCCCccccCC
Q 006240 156 YGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALSLGR 235 (655)
Q Consensus 156 YgW~~hDGr~fG~Q~I~D~~~~L~TsFvK~~~~~~~~GgdW~vRI~g~~~~~~~~~~~~~~~sl~fY~~~E~~~~l~~~~ 235 (655)
|||++||||+||+|+|+|++++|+|+|||+++ |.|||||+|||+|+++++ ..+...+|||||+++|+.+.+.++.
T Consensus 102 YGW~~HDGr~fG~Q~I~D~~~~ItTsFVK~~g--G~~GgdWavRI~g~~~~~---~~~~~~~Sl~fY~~~Eg~~~~~l~~ 176 (801)
T PF03200_consen 102 YGWTEHDGRNFGRQEIVDNNVNITTSFVKSPG--GEHGGDWAVRISGKPRDG---SPPSQKISLFFYIALEGEGSLSLEP 176 (801)
T ss_pred cCCeEccCCcccEEEEEeCCEEEEEEEEecCC--CCCCCcceEEEEEEecCC---CCCCceEEEEEEEecCCCCcccccc
Confidence 99999999999999999988999999999974 479999999999999876 2223389999999999998665543
Q ss_pred CccccCCCceEEeeccCCCCceEEEEecCCC----ceeEEEEeecCccccchHHHHHHHHHHHhh-----------cccc
Q 006240 236 DMFDIHESSLLAIGSRADIGGWQLHLKGMES----LEVHYSGFRTPHIHNLSDLVLENLAAQAAM-----------FNRL 300 (655)
Q Consensus 236 ~~~~~~~~~~~~~G~s~~LG~F~i~~~~~~~----~~~~~~~~~~p~~~~~~d~v~~~l~~~~~~-----------~~~l 300 (655)
...........++|.+++||+|+|++.+..+ .+++|+++.+|++|++||++++.|+.++++ ...+
T Consensus 177 ~~~~~~~~~~~i~G~s~~LG~F~i~~~~~~~~~~~~~~~~~s~~~p~~~~~kdi~~~~L~~~~~~~~~~~~~~~~~~~~~ 256 (801)
T PF03200_consen 177 ELDDGDGSLVSISGESPELGDFTIRFSSNSSPEDPSETHYLSLRVPDVWKAKDIFQQSLQEQIQKLVEKYGEDSRPEDYL 256 (801)
T ss_pred ccccccCCcceeeecCCCCCceEEEEEcCCCCCCcceEEEEEeeCCcHHHHHHHHHHHHHHHHHhhhcccccccccccCC
Confidence 2211123456899999999999999986653 688999999999999999999999887642 2234
Q ss_pred ccCC-------CCCCCCcEEEEEEEEecCeEEEEEEecCCCCccchhhhhccCCchhhhhHHHHHHHHHHHHHHHhhccC
Q 006240 301 QLSD-------TSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLKEKQSEFDAKFENCFKM 373 (655)
Q Consensus 301 ~L~~-------~~~~~~N~~~vQ~t~~~pf~~dI~F~S~~~~~~~~~~~r~~~lt~~~lt~~l~~~~~~F~~kFe~~F~l 373 (655)
.+++ ...+++||++||+|+++||+|||+|+|+++.+. ...|+++.||++|++++++|++||+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~N~~~vQ~t~~~~f~~dI~f~s~~~~~~------~~~l~~~~l~~~l~~~~~~f~~kF~~~F~l 330 (801)
T PF03200_consen 257 PLPDFFTLRNITNFENSNFHIVQKTFEGPFEFDIVFNSASAPQR------SDSLTGENLTELLEKHSKEFDQKFEKTFPL 330 (801)
T ss_pred CcchhccccccCCCCCCcEEEEEEEecCCcEEEEEEecCCCccc------cCCCchHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4443 345678999999999999999999999987642 236999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHhhcccceeeeccceecCCccccccccCCccccCCccccccCCCCCCCCCCCcchhhHhhhHH
Q 006240 374 AAK-LDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLI 452 (655)
Q Consensus 374 ~~k-~~~~~~~fakaalSNLLGGIGYFYG~s~V~~~~~~~~~~~~~~~~~~p~~LfTaVPSR~fFPRGFlWDEGFH~l~i 452 (655)
.+| +++++++|||+||||||||||||||+|+|++.....+...+++++|||++||||||||+|||||||||||||||+|
T Consensus 331 ~~k~~~~~~~~fak~~lSNLlGGiGYfyG~s~v~~~~~~~~~~~~~~~~~~p~~LfTavPSRsfFPRGFlWDEGFH~L~i 410 (801)
T PF03200_consen 331 KAKGFSPEYVEFAKAALSNLLGGIGYFYGSSLVDREDDFESPHRNEPVLYWPAPLFTAVPSRSFFPRGFLWDEGFHQLLI 410 (801)
T ss_pred CCCCCCHHHHHHHHHHHhhcccCceEEeccEEEEeecccccccccCccccCCccceeecCCCCCCCCcCchhhhhhhhhH
Confidence 999 6778899999999999999999999999997544445556788999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHHHhccccccchhHH
Q 006240 453 WRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEI 532 (655)
Q Consensus 453 ~~WD~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~ 532 (655)
++||++||+|||+|||||||+|||||||||||+|||||||+||+||+|++||||||||+|++|+++++..+....+.+..
T Consensus 411 ~~wD~dls~eil~sWl~lm~~dGWIpREQILG~EArskVP~eF~vQ~p~~ANPPTl~l~l~~ll~~~~~~~~~~~~~~~~ 490 (801)
T PF03200_consen 411 SRWDPDLSLEILASWLDLMNEDGWIPREQILGEEARSKVPAEFQVQYPSNANPPTLFLALEKLLDRLKAEKKSEDNSEED 490 (801)
T ss_pred HHhCHHHHHHHHHHHHHhccccCCchhhhhcCHhHHhcCCHHHHcCCCCCCCCccHHHHHHHHHHHHhhccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765444455678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcceeeeCCCCcccccCCCCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHH
Q 006240 533 SSFLERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERHLDLRCWMLLAVDS 612 (655)
Q Consensus 533 ~~fL~~~yprL~~wy~WF~~TQ~G~~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p~~~E~HvDL~sWm~~~a~~ 612 (655)
.+||+++||||++||+||++||+|+++++||||||+.++++|||||||+|||||||||+||+.+|+||||+||||++|++
T Consensus 491 ~~~l~~~yp~L~~~~~wf~~tQ~G~~~~~yrWrGr~~~~~~~lnp~~L~SGlDDYPRa~~p~~~e~hvDl~sWMa~~a~~ 570 (801)
T PF03200_consen 491 LEFLRRIYPRLKRWYNWFNTTQAGDIPGSYRWRGRDPTTDRELNPHTLTSGLDDYPRASHPSDSERHVDLTSWMAFFALN 570 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcCCCCCccccccccCcCCCCCCCCCCCCCCccceechHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCCC
Q 006240 613 LHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 613 m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~~ 654 (655)
|++||..||+++++ .+|.+.++.|+|+ ||++|||+++++
T Consensus 571 M~~IA~~L~~~d~~-~ef~~~~~~i~~~--l~~~hWdeedgf 609 (801)
T PF03200_consen 571 MARIALELGKEDDA-YEFFEHFEYISDA--LNKLHWDEEDGF 609 (801)
T ss_pred HHHHHHHhcCcccH-HHHHHHHHHHHHH--HHHhcCCcccCc
Confidence 99999999999987 4589999999966 999999999985
No 2
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-147 Score=1219.10 Aligned_cols=558 Identities=42% Similarity=0.704 Sum_probs=489.2
Q ss_pred CCCCCCccccCCCCCCcCCCcCcccCCCCccccccCCCCCcccccCCCCCCceeeecccccCCCCc---eeeeeeccCCC
Q 006240 76 QEPETPRVITPFPAPKLMDLPMFQGEHKESLYWGTYRPHVYLGIRARTPRSLVAGLMWLGVKDGRY---HLRHVCQDSDE 152 (655)
Q Consensus 76 ~~~~~~rv~tp~~~pk~~~~~~~~~~~n~sl~WGtYRP~lYFGmR~R~P~sL~~GLMW~~~~~~~~---~lRH~ceq~D~ 152 (655)
+.-+.+++++++++|+|.+..++++++++|++|||||||||||||||+|+||++||||+.+++..+ .|||+|||+|+
T Consensus 61 ~~~~~~~~~~~~~~~~v~~~e~~~~~~~psl~WGtYRp~lYFGlr~r~p~slm~GLMW~~~~~~~p~~~~lRH~~e~gd~ 140 (849)
T KOG2161|consen 61 DGLLGPLANKVLVSPNVADWERLQGETNPSLLWGTYRPNLYFGLRPRSPHSLMTGLMWYNQKDTFPYKPKLRHFCEQGDD 140 (849)
T ss_pred hhhhhccccccccCCCcchHhhhccccCCcccccCCCcceEEeecCCCchhhhhhhheecccccCCcchhhhhhcccCCC
Confidence 456788999999999999999999999999999999999999999999999999999998887654 69999999999
Q ss_pred CccccceeecCCcceeEEEEeCCeeEEEEEeecCCCCCCCCCCceEEEEeEecCccccCCCCcceEEEEEEecCCCCccc
Q 006240 153 LSKYGWTRHNGRDFGHQLLVDQDLTLETSFLKSKGDGSGYGGDWALRLDLQSEESRWNNDMQRTGYLFFYVADEDGNALS 232 (655)
Q Consensus 153 l~~YgW~~hDGr~fG~Q~I~D~~~~L~TsFvK~~~~~~~~GgdW~vRI~g~~~~~~~~~~~~~~~sl~fY~~~E~~~~l~ 232 (655)
++.|||.+||||.||+|+|.|..+.|+|+|||++++ .+||+|++||++.|+.+ .+.....+++|||++.|+...-+
T Consensus 141 l~~fgW~~~Dgr~fG~q~i~D~~~~l~t~Fvk~~~~--~~gg~ws~Rv~~~p~~~--~~~~~~~~sl~fY~~~~~~dG~~ 216 (849)
T KOG2161|consen 141 LKEFGWYEYDGRLFGKQEIGDNPMYLTTFFVKSKEG--ENGGNWSFRVTGEPMLP--DSGELRTASLFFYLSGEGFDGTE 216 (849)
T ss_pred CCCcceEEecccccchhhhccCcceeeEEEEeccCC--CCCCcceEEEEeecCCC--CCccccceeEEEEEeccccccee
Confidence 999999999999999999999999999999999854 88999999999998554 33445778999999987764333
Q ss_pred cCCCccccCCCceEEeeccCCCCceEEEEecCC----------CceeEEEEeecCccccchHHHHHHHHHHHhhcc--cc
Q 006240 233 LGRDMFDIHESSLLAIGSRADIGGWQLHLKGME----------SLEVHYSGFRTPHIHNLSDLVLENLAAQAAMFN--RL 300 (655)
Q Consensus 233 ~~~~~~~~~~~~~~~~G~s~~LG~F~i~~~~~~----------~~~~~~~~~~~p~~~~~~d~v~~~l~~~~~~~~--~l 300 (655)
.........+.+..+.|.+..+|+++.++...+ ..++++++...|++|+++|+++++++..++... .+
T Consensus 217 ~~~~~~~~k~~~~~~~G~~k~lGn~~~~f~~sp~~~~~~t~~~~~~~~~~~~k~P~l~~~td~v~~ll~~~~~~~~p~e~ 296 (849)
T KOG2161|consen 217 VGDKPLLEKEASAAFLGYHKKLGNCQGVFQMSPGGFDLETAQDEEETKEFEDKIPDLWLLTDLVQSLLKAFNEEINPSEE 296 (849)
T ss_pred ccccccccccchhhhcccHHHhccccceeecCCCCCCccccccccccccccccCCchhHHHHHHHHHHHHhhccCChHHh
Confidence 322212223456779999999999665554322 256788999999999999999999988775211 01
Q ss_pred c------------cCCCCCCCCcEEEEEEEEecCeEEEEEEecCCCCccchhhhhccCCchhhhhHHHHHHHHHHHHHHH
Q 006240 301 Q------------LSDTSVSSPNILVFQISARIPFKADIAFVSGTGVKTSRVEERLSSLTGTSLTSLLKEKQSEFDAKFE 368 (655)
Q Consensus 301 ~------------L~~~~~~~~N~~~vQ~t~~~pf~~dI~F~S~~~~~~~~~~~r~~~lt~~~lt~~l~~~~~~F~~kFe 368 (655)
+ ++|.. ...-++++|+++..+|+|||+|++. +++.++++.+|+.|+++.++|++||+
T Consensus 297 ~~~~~~~l~~~~~~~n~~-~en~f~~~Q~~~~~~~~~di~f~t~----------~~k~~~~e~~s~~l~~~l~~fnekFd 365 (849)
T KOG2161|consen 297 TKDLPEDLLPEGKLYNFN-PENKFTAIQKVFKFQFIFDIVFVTV----------RLKFLTGEKLSQLLEQNLAEFNEKFD 365 (849)
T ss_pred hhhhhHhhccccccCCCC-CCCCeEEEEEeecCcccccEEEEEe----------eeccccchHHHHHHHHHHHHHHHHHH
Confidence 1 12211 2224999999999999999999983 44678999999999999999999999
Q ss_pred hhccCCCC-CChhhHHHHHHHHHhhcccceeeeccceecCCcc-ccccccCCccccCCccccccCCCCCCCCCCCcchhh
Q 006240 369 NCFKMAAK-LDSESVVVGKAAIGNMLGGIGYFYGQSKVSLPKN-TKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEG 446 (655)
Q Consensus 369 ~~F~l~~k-~~~~~~~fakaalSNLLGGIGYFYG~s~V~~~~~-~~~~~~~~~~~~~p~~LfTaVPSR~fFPRGFlWDEG 446 (655)
++|++++| .+..+..||+++|||||||||||||+++|..... +..+...+..+|||++||||||||+|||||||||||
T Consensus 366 ~~F~l~ek~~~~~~~~~a~~alSnlLGgiGyFyG~~~v~~~~~~~~~~a~~n~~~~~P~~LftaVPSR~~FPRGFyWDEG 445 (849)
T KOG2161|consen 366 KTFQLKEKELDKFYLRFAKAALSNLLGGIGYFYGQSLVLFNYIFFTYDAEYNAALYGPRPLFTAVPSRPFFPRGFYWDEG 445 (849)
T ss_pred HhhcccCcCcchhhhhhhhhhhhhhhcccceeecceeeecCccchhhhhhccccccCCcCccccCCCCCCCCCcceeccc
Confidence 99999999 7777889999999999999999999999998755 333333468899999999999999999999999999
Q ss_pred HhhhHHHhhhhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHHHhccccc
Q 006240 447 FHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTA 526 (655)
Q Consensus 447 FH~l~i~~WD~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~ 526 (655)
||||+|++||.++++|||+|||+|||+|||||||||||.|||||||.||+||+|++||||||+||+.+++++.+..++.+
T Consensus 446 FH~l~i~~~D~~~t~Eil~sW~~l~n~DGWi~RE~iLG~EA~skvP~efivQ~~~~aNPPTLllav~~~~~~~~~~~~~~ 525 (849)
T KOG2161|consen 446 FHQLLIWEWDFDLTLEILASWFPLMNIDGWIPREQILGTEARSKVPNEFIVQYPDNANPPTLLLAVYRLLNREREMYGRE 525 (849)
T ss_pred hhhhhhhhcCccchHHHHHHHHhhhcccccchHHHHhhhHHHhhCCchhcccCccCCCCceeHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------CcceeeeCCCCcccccCCCCCCCCCCCCCCCCCCCCcccc
Q 006240 527 TESNEISSFLERALVRLEAWFQWFNTTQSGKEM-------SSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSEEERH 599 (655)
Q Consensus 527 ~~~~~~~~fL~~~yprL~~wy~WF~~TQ~G~~~-------~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p~~~E~H 599 (655)
.+..+||+++||||.+||+||++||.|+.+ ++||||||+..+..+||||||+|||||||||+||+..|+|
T Consensus 526 ---~r~~~fL~r~fprLl~~f~Wf~~sQ~G~~~~~~~~~n~~YrWrGR~~~~~t~lnp~~L~SGlDDyPRAs~Ps~~Elh 602 (849)
T KOG2161|consen 526 ---DRSLTFLKRLFPRLLKWFTWFRKSQEGKNVFEEGFDNEGYRWRGRDLPTGTTLNPHCLSSGLDDYPRASHPSVLELH 602 (849)
T ss_pred ---chHHHHHHHHHHHHHHhhhhhhhcccCCcccccccccceeEeccCCCCCCceeccccccccccccccccCchHHHHh
Confidence 344799999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCCC
Q 006240 600 LDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 600 vDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~~ 654 (655)
|||+|||++|||+|.+||+++|+.+ ++|+.....+...+.|.+.||||+++.
T Consensus 603 vDl~~W~~lasrsl~~iae~lg~~~---~E~~~a~~e~~~~e~L~~~HW~ee~~~ 654 (849)
T KOG2161|consen 603 VDLRCWVGLASRSLNRIAEFLGETE---AEYATAITELECKENLVQNHWSEEDQA 654 (849)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcchh---hhhhhhhhHHHHHHHHHHhccChhhCe
Confidence 9999999999999999999999987 467666667777799999999999874
No 3
>PRK10137 alpha-glucosidase; Provisional
Probab=99.70 E-value=1.7e-16 Score=183.39 Aligned_cols=199 Identities=17% Similarity=0.235 Sum_probs=154.7
Q ss_pred cCCCCCC--CCC--CCcchhhHhhhHHHhhhhHHHHHHHHHHHhcc---------CCCCCccccc-------ccChhhhh
Q 006240 430 AVPSRPF--FPR--GFLWDEGFHQLLIWRWDVRICLDILGHWLDLM---------NTDGWIPREQ-------ILGAEALS 489 (655)
Q Consensus 430 aVPSR~f--FPR--GFlWDEGFH~l~i~~WD~~l~~eil~~W~dlm---------~~dGWIpREQ-------ILG~EARs 489 (655)
.|||-.. ||. -|-||.-||.+.+.++|+++|++.|..-|+.+ -++|-||+|. .-|+.+
T Consensus 333 t~Ps~gl~Wf~~~~~W~WDS~~~A~~la~fdpelA~~~lr~Lf~~Q~~~~d~~r~~~~G~Iph~vf~~~~p~R~g~~~-- 410 (786)
T PRK10137 333 VTPSVTARWFSGNQTWPWDTWKQAYAMAHFNPDVAKENIRAVFSWQIQPDDSVRPQDVGFVPDLIAYNLSPERGGDGG-- 410 (786)
T ss_pred eEeCCCCCCCCCCCccchHHHHHHHHHhhcCHHHHHHHHHHHHHhhccccCCCCcCCCCeeeEEeccCCCcccccccc--
Confidence 4677666 998 99999999999999999999999999999999 6689999997 333332
Q ss_pred cCCccccccCCCCCCCcchHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCcceee-
Q 006240 490 KVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNT---TQSGKEMSSYFWH- 565 (655)
Q Consensus 490 ~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~---TQ~G~~~~~YrWr- 565 (655)
.....+..||....++..+.+.. ...+||+++||+|.+|.+|+.+ ....+++ .+.
T Consensus 411 -------~~ne~~tqPPL~a~av~~vy~~t-----------~d~~fl~~lyPkL~a~h~Ww~~~RD~dg~Gl~---eY~~ 469 (786)
T PRK10137 411 -------NWNERNTKPSLAAWSVMEVYNVT-----------QDKAWLAEMYPKLVAYHDWWLRNRDHNGNGVP---EYGA 469 (786)
T ss_pred -------cccCCCcCcCHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHHHhcCCCCCCcee---Eeec
Confidence 23445668999999999998873 2368999999999999999954 2222222 221
Q ss_pred eCCCCccc-------------------ccC--------------------CCCCCCCCCCCCCCCC--C-----------
Q 006240 566 GRDTTTIR-------------------ELN--------------------PKTLSSGLDDYPRASH--P----------- 593 (655)
Q Consensus 566 GR~~~~~~-------------------elN--------------------p~tL~SGLDDYPRa~~--p----------- 593 (655)
-+++.|+. -|+ -|.-.|||||-||... |
T Consensus 470 ~~~~~h~~~~g~~~~~i~~~~~~~~~~G~~n~~~~~~~~~~~~~~~~~~~~~~WESGmDNap~f~~i~~~~~~~y~r~~y 549 (786)
T PRK10137 470 TRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGG 549 (786)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCCCccccccccccccchhhhccc
Confidence 12333311 111 2678999999999862 1
Q ss_pred --------------CC--------ccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhccccc
Q 006240 594 --------------SE--------EERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILH 651 (655)
Q Consensus 594 --------------~~--------~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~ 651 (655)
.. .-.=|||+|||+.+.+.|++||+.||.++++ .+|++.++.|+ +.||+++|+++
T Consensus 550 ~r~~~~V~~~~~~~~dg~l~~~p~~~e~VDLNsyLy~a~~~LA~LAe~LG~~e~A-~~~~~~A~~Lr--~aIn~~~WDee 626 (786)
T PRK10137 550 KRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEA-KRYRQLAQQLA--DYINTCMFDET 626 (786)
T ss_pred cccceeeeehhcccCCCCccCCCCcCCCHHHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHH--HHHHHHccCCc
Confidence 11 1127999999999999999999999999875 78999999999 88999999999
Q ss_pred CCC
Q 006240 652 TEL 654 (655)
Q Consensus 652 ~~~ 654 (655)
+++
T Consensus 627 ~Gf 629 (786)
T PRK10137 627 TGF 629 (786)
T ss_pred CCe
Confidence 874
No 4
>PLN02567 alpha,alpha-trehalase
Probab=99.50 E-value=1e-13 Score=156.54 Aligned_cols=190 Identities=15% Similarity=0.177 Sum_probs=146.2
Q ss_pred CCCCCcchhhHhhhHHHhhhh-HHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRWDV-RICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~WD~-~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
|-=-+|||.-|+.+.+..=+. +++..+|.+.+.+++..|.||. .-.+.+....+||.|...+..+
T Consensus 150 FrE~yyWDSy~i~~GLl~s~~~~~A~~mi~Nf~~~i~~~GfIPN--------------g~R~Yyl~RSQPPlla~mV~~~ 215 (554)
T PLN02567 150 FREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLVDTYGFVPN--------------GARAYYTNRSQPPLLSAMVLAV 215 (554)
T ss_pred cCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCcCCC--------------CCcccccCCCCcHHHHHHHHHH
Confidence 555679999999999999877 9999999999999999999993 2346789999999999999988
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCCCcceeeeC-----------CCCcccccC
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQ--------SGKEMSSYFWHGR-----------DTTTIRELN 576 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ--------~G~~~~~YrWrGR-----------~~~~~~elN 576 (655)
.+.- ...+||+++||+|.+||+||.+.. .|......|+... |..+-.+++
T Consensus 216 ~~~t-----------~d~~~l~~~lp~L~~E~~~W~~~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~a~~~~ 284 (554)
T PLN02567 216 YAAT-----------KDVELVRRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEVASKFS 284 (554)
T ss_pred HHhc-----------CcHHHHHHHHHHHHHHHHHHhcCCcceeeecCCCCcCCCcccccCCCCCCCccccccHHHHhcCC
Confidence 8852 235799999999999999996531 1221111233221 111111111
Q ss_pred C------------CCCCCCCCCCCCCCC--C------CCccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHh
Q 006240 577 P------------KTLSSGLDDYPRASH--P------SEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATL 636 (655)
Q Consensus 577 p------------~tL~SGLDDYPRa~~--p------~~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~ 636 (655)
- -.=.||+|...|... . ...-.+|||+|||+.+.+.|++||+.||.++++ ++|++.++.
T Consensus 285 ~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti~t~~i~pVDLNa~L~~~e~~LA~la~~lG~~~~a-~~~~~~A~~ 363 (554)
T PLN02567 285 SSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTLRTTSILPVDLNAFLLKMELDIAFFAKLLGDKATA-ERFLKAAKA 363 (554)
T ss_pred CchHHHHHHHHHHHHHHcCCCchhhhccccccccccccccccCccHHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHH
Confidence 1 024699999999742 1 112478999999999999999999999998765 789999999
Q ss_pred ccChhhHhhhcccccCCC
Q 006240 637 LSDFKFLISFILILHTEL 654 (655)
Q Consensus 637 l~d~~~ln~~hws~~~~~ 654 (655)
+. +.||+++|+++++.
T Consensus 364 ~~--~aI~~~lWdee~G~ 379 (554)
T PLN02567 364 RK--RAINAVLWNEEMGQ 379 (554)
T ss_pred HH--HHHHHHhcCcccCe
Confidence 99 99999999999873
No 5
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=98.72 E-value=8.8e-09 Score=115.96 Aligned_cols=190 Identities=21% Similarity=0.256 Sum_probs=135.2
Q ss_pred CCCCCcchhhHhhhHHHhhh-hHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRWD-VRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~WD-~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
|-==+|||.=|-.+.+..=+ .++++.+|.+.+.+++.=|.||. .=++.+-+-.+||.|.+.+..+
T Consensus 126 F~E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i~~yGfipN--------------g~R~Yyl~RSQPPlla~mV~~~ 191 (512)
T PF01204_consen 126 FREMYYWDSYFIILGLLASGMYETAKGMIENFLYLIDRYGFIPN--------------GNRTYYLNRSQPPLLAQMVREY 191 (512)
T ss_dssp B-S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--S--------------BSBGGGTT---S--HHHHHHHH
T ss_pred cccchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCcCCC--------------CccHHhccCCCCchHHHHHHHH
Confidence 44457999999887665543 56889999999999998887754 4567888889999999999999
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCC---------------------CCCCcceeeeCCCCcc--
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSG---------------------KEMSSYFWHGRDTTTI-- 572 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~G---------------------~~~~~YrWrGR~~~~~-- 572 (655)
.+.. ...+||++.+|.|.+.|+||.+.++. +-+++|++...+....
T Consensus 192 y~~t-----------~d~~~l~~~lp~L~ke~~fW~~~~r~~~~~~~~~~~~l~ry~~~~~~prpEsy~eD~~~a~~~~~ 260 (512)
T PF01204_consen 192 YEAT-----------KDKAFLREALPALEKEYEFWMDNNRDVRVTGLGKGYGLNRYGDPWNSPRPESYREDVETAENFPS 260 (512)
T ss_dssp HHHH-----------HTCHHHHHHHHHHHHHHHHHCCCEEETTEEEECTSEECCHHHHCHHCT-CCCCCHHHHHHHCHCH
T ss_pred HHhc-----------CCHHHHHHHHHHHHHHHHHHCCCCcceeecCCCccCCcccccCCCCCCcchHHHhhHHHHHhhcc
Confidence 9873 34579999999999999999742211 1246677654322110
Q ss_pred ----cccCC--C-CCCCCCCCCCCCCCC---C---------CccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 006240 573 ----RELNP--K-TLSSGLDDYPRASHP---S---------EEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGST 633 (655)
Q Consensus 573 ----~elNp--~-tL~SGLDDYPRa~~p---~---------~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~ 633 (655)
.++-- + .-.||.|-+.|.-.- + ..-.=|||+|.|+.+.+.|++||+.||..+++ +.|.+.
T Consensus 261 ~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~l~~~~t~~iipVDLNa~L~~~e~~LA~~a~~lG~~~~a-~~~~~~ 339 (512)
T PF01204_consen 261 ERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSNLFTIRTTDIIPVDLNAILYRNEKDLAEFAELLGDQEKA-EEYRQR 339 (512)
T ss_dssp TSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-TCHHCECCCEE-HHHHHHHHHHHHHHHHHHHHTT-HHHH-HHHHHH
T ss_pred cchHHHHhhcccchhhhhhhccceeeecCCCchhhhhccceeeecCchHHHHHHHHHHHHHHHHHHcCchhHH-HHHHHH
Confidence 01110 0 256899988886432 1 11256999999999999999999999998775 899999
Q ss_pred HHhccChhhHhhhcccccCCC
Q 006240 634 ATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 634 ~~~l~d~~~ln~~hws~~~~~ 654 (655)
++.++ +.||++.|+++++.
T Consensus 340 A~~~~--~aI~~~lWdee~g~ 358 (512)
T PF01204_consen 340 AEERK--EAINQYLWDEEDGF 358 (512)
T ss_dssp HHHHH--HHHHHHTEETTTTE
T ss_pred HHHHH--HHHHHhCccCCCCe
Confidence 99999 99999999999874
No 6
>PRK13271 treA trehalase; Provisional
Probab=98.40 E-value=2e-06 Score=98.16 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=135.4
Q ss_pred CCCCCcchhhHhhhHHHhh-hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRW-DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~W-D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
|-=-+|||.=|=.+.+..= -.++++.+|.+.+.+++.-|.||.= =++.|-+-.+||-|..-++.+
T Consensus 157 FrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~~yG~IPNg--------------~R~YYl~RSQPP~l~~Mv~~~ 222 (569)
T PRK13271 157 FREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTWGHIPNG--------------NRSYYLSRSQPPFFALMVELL 222 (569)
T ss_pred cchhhhhHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhCcCcCC--------------chhhcccCCCChhHHHHHHHH
Confidence 5666799998876655442 2478999999999999999988764 346788888999998777666
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhc----CCC-------CC---CcceeeeCCC-----------C
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQ----SGK-------EM---SSYFWHGRDT-----------T 570 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ----~G~-------~~---~~YrWrGR~~-----------~ 570 (655)
.+. ...+||++..|.|++=|+||.+.. .|. ++ .-+|.+.... .
T Consensus 223 ~~~------------~~~~~l~~~lp~l~kEy~~Wm~~~~~~~~~~~~~r~v~~~~~~~L~rY~~~~~~PRpEsy~eD~~ 290 (569)
T PRK13271 223 AQH------------EGDAALKQYLPQMQKEYAYWMEGVENLQPGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIA 290 (569)
T ss_pred Hhc------------CcHHHHHHHHHHHHHHHHHHhCCCcccCccccccceEEeCCCCcccccccCCCCCCCCcHHHHHH
Confidence 542 112699999999999999886532 111 00 1122222110 0
Q ss_pred cccccCC-----------CCCCCCCCCCCCCCC-CC-------CccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Q 006240 571 TIRELNP-----------KTLSSGLDDYPRASH-PS-------EEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYG 631 (655)
Q Consensus 571 ~~~elNp-----------~tL~SGLDDYPRa~~-p~-------~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~ 631 (655)
+-.+++. -.-.||+|-..|... |. ..-.=|||+|-|+.+.+.|+++|+.+|..+++ +.|+
T Consensus 291 ~a~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~~i~t~~IiPVDLNALLy~ae~~LA~la~~lGd~~~A-~~y~ 369 (569)
T PRK13271 291 TAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTIRTTSIVPVDLNALMFKMEKILARASKAAGDNAMA-NQYE 369 (569)
T ss_pred HHhhCCcchHHHHHHHHHHHhhcCCcchhhhccCCccccccccccccCchHHHHHHHHHHHHHHHHHHhCChhhH-HHHH
Confidence 0011110 134899999999752 21 12345999999999999999999999998765 7899
Q ss_pred HHHHhccChhhHhhhcccccCCC
Q 006240 632 STATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 632 ~~~~~l~d~~~ln~~hws~~~~~ 654 (655)
+.++.++ +.++++.|+++++.
T Consensus 370 ~~A~~rr--~AI~~~LWnee~G~ 390 (569)
T PRK13271 370 TLANARQ--KAIEKYLWNDKEGW 390 (569)
T ss_pred HHHHHHH--HHHHHhcccCCCCE
Confidence 9999999 99999999998763
No 7
>PRK13270 treF trehalase; Provisional
Probab=98.20 E-value=2.1e-05 Score=89.50 Aligned_cols=185 Identities=15% Similarity=0.192 Sum_probs=133.9
Q ss_pred CCCCCcchhhHhhhHHHhh-hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRW-DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~W-D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
|-=-+|||.=|=.+.+..= -.++++.+|.+.+.+++.-|.||.= =++.|-+-.+||-|.+-++.+
T Consensus 169 FrE~YYWDSYwi~~GLl~sg~~~~a~~mi~Nf~~li~~yGfIPNG--------------~R~YYl~RSQPP~l~~Mv~~y 234 (549)
T PRK13270 169 FSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNG--------------NRTYYLSRSQPPVFALMVELF 234 (549)
T ss_pred cccchhhhHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHcCcCcCC--------------chhccccCCCCHhHHHHHHHH
Confidence 5556799998877665432 2488999999999999999987754 346788888999998777554
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC----------------CC------------CCCcceeeeC
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQS----------------GK------------EMSSYFWHGR 567 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~----------------G~------------~~~~YrWrGR 567 (655)
.+. ..+++++..|.|++-|+||.+... |. -|++|| +
T Consensus 235 ~~~-------------~~~~~~~~lp~l~~E~~fWm~~~~~~~~~~~~~~~v~~~~g~~L~rY~~~~~~PRpEsyr---e 298 (549)
T PRK13270 235 EED-------------GVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWL---E 298 (549)
T ss_pred Hhc-------------CHHHHHHHHHHHHHHHHHHcCCCCccCcccccceeEecCCCCccccccCCCCCCCCchhH---H
Confidence 331 136899999999999998865332 11 123332 1
Q ss_pred CCCccccc-CCC---------CCCCCCCCCCCCCC-C-------CCccccchHHHHHHHHHHHHHHHHHHhCCCchHHHH
Q 006240 568 DTTTIREL-NPK---------TLSSGLDDYPRASH-P-------SEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKE 629 (655)
Q Consensus 568 ~~~~~~el-Np~---------tL~SGLDDYPRa~~-p-------~~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~ 629 (655)
|..+.... -|+ .=.||.|...|... + ...-.=|||+|-|+...+.|+.|++.+|.++++ +.
T Consensus 299 D~~~a~~~~rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~~iipVDLNaiL~~~e~~LA~~a~~lG~~~~a-~~ 377 (549)
T PRK13270 299 DVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGEKETE-AL 377 (549)
T ss_pred HHHhhcccCCchHHHHHHHHHHHHcCCCchhhcccCCcccccccccCcchhhHHHHHHHHHHHHHHHHHHhCChHHH-HH
Confidence 11110000 011 22799999999752 1 112256899999999999999999999998765 78
Q ss_pred HHHHHHhccChhhHhhhcccccCCC
Q 006240 630 YGSTATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 630 y~~~~~~l~d~~~ln~~hws~~~~~ 654 (655)
|++.++.+. +.|++++|+++++.
T Consensus 378 ~~~~A~~r~--~AI~~~LWnee~G~ 400 (549)
T PRK13270 378 FRQKASARR--DAVNRYLWDDENGI 400 (549)
T ss_pred HHHHHHHHH--HHHHHhccCcccCe
Confidence 999999999 99999999998864
No 8
>PRK13272 treA trehalase; Provisional
Probab=98.04 E-value=2.7e-05 Score=88.50 Aligned_cols=185 Identities=15% Similarity=0.189 Sum_probs=131.8
Q ss_pred CCCCCcchhhHhhhHHHhh-hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRW-DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~W-D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
|-=-+|||.=|=.+.+..= -.++++.+|.+.+.+++.-|.||.= =++.|-+-.+||-|..-+..+
T Consensus 158 FrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~~yGfIPNG--------------~R~YYl~RSQPP~l~~Mv~~~ 223 (542)
T PRK13272 158 FREVYYWDSYFTMLGLVKSGQTTLSRQMLDNFAYLIDTYGHIPNG--------------NRTYYLSRSQPPFFSYMVELQ 223 (542)
T ss_pred ccchhhhHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHcCcCcCC--------------chhccccCCCchhHHHHHHHH
Confidence 5556799998877655432 2488999999999999999988764 346788888999998777766
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCC----------------C------------CCCcceeeeC
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQSG----------------K------------EMSSYFWHGR 567 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~G----------------~------------~~~~YrWrGR 567 (655)
.+.- ....| ++..|.|++=|+||.+...+ . .|++||=--.
T Consensus 224 ~~~t-----------~d~~~-~~~lp~l~kEy~~Wm~~~~~~~~~~~~~~~v~~~~g~~L~rY~~~~~~PRpEsy~eD~~ 291 (542)
T PRK13272 224 AGVE-----------GDAAY-QRYLPQLQKEYAYWMQGSDDLQPGQAARHVVRLADGSLLNRYWDERDTPRPEAWLHDTR 291 (542)
T ss_pred HHhc-----------ChHHH-HHHHHHHHHHHHHHcCCCCCCCCccccceeEecCCCcchhhhcCCCCCCCChHHHHHHH
Confidence 5431 12234 78999999999988764422 0 1233330000
Q ss_pred CCCcccccCCC---------CCCCCCCCCCCCCCCCC---------ccccchHHHHHHHHHHHHHHHHHHhCCCchHHHH
Q 006240 568 DTTTIRELNPK---------TLSSGLDDYPRASHPSE---------EERHLDLRCWMLLAVDSLHSIAELFESSSEHKKE 629 (655)
Q Consensus 568 ~~~~~~elNp~---------tL~SGLDDYPRa~~p~~---------~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~ 629 (655)
+..... -.|+ .-.||+|...|... +. .-.=|||+|-|+...+.|+++++.+|..+++ ++
T Consensus 292 ~a~~~~-~~~~~~~Y~~l~a~aESGWDfSsRw~~-~~~~L~~i~t~~IvpVDLNalL~~~e~~LA~~~~~lG~~~~a-~~ 368 (542)
T PRK13272 292 TAAEAK-DRPAAEVYRDLRAGAESGWDYSSRWLA-DGKTLASIRTTAIVPVDLNSLLYHLERTLAQACASSGLAACS-QD 368 (542)
T ss_pred HhcCcc-cCcHHHHHHHHHHHHhcCCCchhhhcc-ccccccccCcccccCccHHHHHHHHHHHHHHHHHHhCChHHH-HH
Confidence 000000 0111 23799999999763 22 2357999999999999999999999988665 78
Q ss_pred HHHHHHhccChhhHhhhcccccCC
Q 006240 630 YGSTATLLSDFKFLISFILILHTE 653 (655)
Q Consensus 630 y~~~~~~l~d~~~ln~~hws~~~~ 653 (655)
|++.++.+. +.|++++|++ ++
T Consensus 369 ~~~~A~~r~--~aI~~~lWde-~G 389 (542)
T PRK13272 369 YAALAQQRK--QAIDAHLWNP-AG 389 (542)
T ss_pred HHHHHHHHH--HHHHHhccCc-Cc
Confidence 999999999 9999999997 55
No 9
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=97.91 E-value=0.00012 Score=81.78 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHHHhccccccchhHHHHH
Q 006240 456 DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNEISSF 535 (655)
Q Consensus 456 D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~f 535 (655)
|..+....|..+.+.+.++|-+| +.+|... .....-|+.-+..-..+..+.. .-.+.++
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p----------~~~P~~~----~~~~~~~~w~l~~i~~~~~~y~-------~tGD~~~ 225 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLP----------SVAPSYG----GGGFGIPDWSLAWIIIPWDYYL-------YTGDREF 225 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-S----------SBSS-------SSGGGBHHHHHHHHHHHHHHHH-------HHT-HHH
T ss_pred cHHHHHHHHHHHHHhhcccCCce----------EEecccC----CCCCCCccHHHHHHHHHHHHHH-------HhCCHHH
Confidence 34577888888888889999877 2456433 2222334433222222222211 1235689
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcceeeeCCCCcccccCCCCCCCCCCCCCCCCCC--CCccccchHHHHHHHHHHHH
Q 006240 536 LERALVRLEAWFQWFNTTQSGKEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHP--SEEERHLDLRCWMLLAVDSL 613 (655)
Q Consensus 536 L~~~yprL~~wy~WF~~TQ~G~~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p--~~~E~HvDL~sWm~~~a~~m 613 (655)
|++.||.++++.+|+.+.... |.. .....++-|++-...+ .....++=..|+.+.+.+.|
T Consensus 226 l~~~~~~~~~~l~~~~~~~~~---------~~~---------~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (509)
T PF05592_consen 226 LEEYYPAMKRYLDYLERRVDD---------GLD---------GLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAA 287 (509)
T ss_dssp HHHHHHHHHHHHHHHHTTB-T---------SSB----------CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCc---------ccc---------CCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999874433 100 1244556677722211 11234455899999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCC
Q 006240 614 HSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTE 653 (655)
Q Consensus 614 ~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~ 653 (655)
++||+.||+++++ +.|.+.++.|+ +.+|+..|+++++
T Consensus 288 a~lA~~lg~~~~a-~~y~~~a~~lk--~a~~~~~~d~~~g 324 (509)
T PF05592_consen 288 AELAEALGKDEDA-AEYRARAERLK--AAINRHFWDPEKG 324 (509)
T ss_dssp HHHHHHCT-HHHH-HHHHHHHHHHH--HHHHHHCEETTTT
T ss_pred HHHHHHcCCHHHH-HHHHHHHHHHH--HHHHHhccCcccC
Confidence 9999999999885 89999999999 9999999988765
No 10
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=97.33 E-value=0.0048 Score=67.27 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=126.2
Q ss_pred CCCCCcchhhHhhhHHHhhhhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHH
Q 006240 437 FPRGFLWDEGFHQLLIWRWDVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELI 516 (655)
Q Consensus 437 FPRGFlWDEGFH~l~i~~WD~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll 516 (655)
|-|-=+. .+..|.+..-..+.+++||..+-..+. .|-||+|--.|.+++ +.+.--+|-++.+|.+++
T Consensus 31 ~GRDt~I--sl~gl~l~~~~~~~a~~~L~~~~~~~~-~G~ipn~~~~~~~~~----------Y~s~Dat~wfl~~l~~Y~ 97 (370)
T PF06202_consen 31 WGRDTFI--SLPGLLLSPGRFEEARNILATFAGTQR-HGLIPNELRDGEEPR----------YNSVDATLWFLIALQEYY 97 (370)
T ss_pred cccHHHH--HHHHHHhCCCcHHHHHHHHHHHHHhhh-cCcccCcccCCCCCC----------CCCCccHHHHHHHHHHHH
Confidence 6664333 345677778889999999999999887 999999975566555 556667777888888888
Q ss_pred HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC--CCC--CCcceeeeCCCCcccccCCCCCCCCCCCCCCCCC
Q 006240 517 YAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQS--GKE--MSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASH 592 (655)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~--G~~--~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~ 592 (655)
+.- .+.+||++++|.++.-.+|+.+--. ..+ ..++.+.|..- | =-+=||-..+..+
T Consensus 98 ~~t-----------~D~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~------~---~~tWmD~~~~g~~ 157 (370)
T PF06202_consen 98 RWT-----------GDYSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGL------N---NQTWMDARNDGRP 157 (370)
T ss_pred HHh-----------CCHHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCC------C---CCCccccccCCcc
Confidence 862 2368999999999999999965211 112 24566655421 1 1122443322221
Q ss_pred CCCc-cccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCC
Q 006240 593 PSEE-ERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTE 653 (655)
Q Consensus 593 p~~~-E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~ 653 (655)
.++. -.-|+.++..+-+-+.++.+++..+.+ .+.+|.+.++.|+ +.+++..|+++.+
T Consensus 158 ~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~--~a~~~~~~A~~lk--~~F~~~FW~~~~g 215 (370)
T PF06202_consen 158 VTPRDGAAVEIQALWYNALRFAAELAEKFGDE--LAARYREWAERLK--ESFEKRFWDEDRG 215 (370)
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHH--HHHHHHHcCCCCC
Confidence 1111 133888988888889999999976665 3479999999999 9999999997754
No 11
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=95.86 E-value=0.14 Score=59.48 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=104.7
Q ss_pred HhhhhHHHHHHHHHHHhccCCCCCccccccc-ChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHHHhccccccchhH
Q 006240 453 WRWDVRICLDILGHWLDLMNTDGWIPREQIL-GAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAIKKNKFTATESNE 531 (655)
Q Consensus 453 ~~WD~~l~~eil~~W~dlm~~dGWIpREQIL-G~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~ 531 (655)
+.=..+.+++||..+...| .+|-||..-.- |.+ | .+.+.--+|=++.+|.++...- .
T Consensus 308 ~tgr~~~A~~iL~~fa~~~-~~GliPN~~~~~g~~-----p-----~YntvDAtLWfi~al~~Y~~~t-----------g 365 (575)
T TIGR01561 308 IDKQFDEAKEAILKFANLC-KRGLIPNNFIAFGGD-----P-----IYNGVDASLWAIHAIDKTFAYS-----------Q 365 (575)
T ss_pred cCCcHHHHHHHHHHHHHHh-HCCCCCCccCCCCCC-----c-----cCCCchHHHHHHHHHHHHHHHh-----------C
Confidence 3344578899999999999 59999986221 121 1 2334445566677777776541 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC---C-CCcceeeeCCCCcccccCCCCCCCCCCC---CCCCCCCCCccccchHHH
Q 006240 532 ISSFLERALVRLEAWFQWFNTTQSGK---E-MSSYFWHGRDTTTIRELNPKTLSSGLDD---YPRASHPSEEERHLDLRC 604 (655)
Q Consensus 532 ~~~fL~~~yprL~~wy~WF~~TQ~G~---~-~~~YrWrGR~~~~~~elNp~tL~SGLDD---YPRa~~p~~~E~HvDL~s 604 (655)
+.+++++++|.++.|.+|+.+-. |- + +.+..+.|..-+. .-+.+++ .||.- .-|.+++
T Consensus 366 D~~~l~~l~p~l~~ii~~y~~G~-~~~i~~d~dGLi~~g~~lTW--------MDa~~g~~~~tPR~G------~~VEInA 430 (575)
T TIGR01561 366 DFLFIRDVVDKVLDIIDNYCAGN-DFAIGMDNDLIFHKGAPLTW--------MDAKVDERAVTPRAG------AACEINA 430 (575)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCC-CcEEEECCCccEeCCCCCCC--------CCCCCCCccCCCCCC------ccHHHHH
Confidence 35789999999999999997721 11 0 1123333311111 1122222 34422 3477888
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCC
Q 006240 605 WMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTE 653 (655)
Q Consensus 605 Wm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~ 653 (655)
..+-+-+.|+.+++.+|++ +..|.+.++.++ +..++..|+++.+
T Consensus 431 LwYnAL~~~a~la~~~g~~---a~~y~~~A~~lk--~~F~~~FW~~~~g 474 (575)
T TIGR01561 431 LWYNALKTAEFLGNELGED---AESLEEKAAGVA--KNFAEKFINPDGN 474 (575)
T ss_pred HHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHH--HHHHHhcCCCCCC
Confidence 8888888899999999874 257999999999 9999999998854
No 12
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.033 Score=64.24 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=125.2
Q ss_pred CcchhhHhhhHHHhhh-hHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHHH
Q 006240 441 FLWDEGFHQLLIWRWD-VRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYAI 519 (655)
Q Consensus 441 FlWDEGFH~l~i~~WD-~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~~ 519 (655)
++||.=+-...++.=+ .+.++-+|++.+.++|..|.||.- =.+++-.-.+||-|..-+..+.+..
T Consensus 187 YyWDsywii~GLl~S~m~~takGmieNf~~lV~~yG~ipNg--------------~R~YYl~RSQPPllt~Mv~~~y~~t 252 (600)
T KOG0602|consen 187 YYWDSYWIIKGLLASQMFDTAKGMIENFISLVDTYGFIPNG--------------GRVYYLNRSQPPLLTGMVYEYYEAT 252 (600)
T ss_pred ecccHHHHHHhHHhhcccHHHHHHHHHHHHHHHhcCcccCC--------------CeeeeeccCCCchhhhhHHHhhhcc
Confidence 5788876665555433 366899999999999999998864 2356666679998875544444432
Q ss_pred HhccccccchhHHHHHHHHHHHHHHHHHHHHHh------------------hcCCCCCCcceeeeCCCCcc---------
Q 006240 520 KKNKFTATESNEISSFLERALVRLEAWFQWFNT------------------TQSGKEMSSYFWHGRDTTTI--------- 572 (655)
Q Consensus 520 ~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~------------------TQ~G~~~~~YrWrGR~~~~~--------- 572 (655)
...+|+.+++|-|.+=|+.|.+ .+.|+-|++|+=.=.+..+.
T Consensus 253 -----------~~~~~~~~~l~tl~kEy~fw~~~~~~~~~~~~~~l~~y~~~~~~prPEsy~~d~e~~e~~~t~~~~~~~ 321 (600)
T KOG0602|consen 253 -----------NDEQFLKRALPTLIKEYEFWTNNRTEDVKDEGKVLSRYRVMGSGPRPESYREDFETAEHLKTEKEKQQL 321 (600)
T ss_pred -----------CcHHHHHHHHHHHhhheecccCCCccccccCCceeEEEeccCCCCCCcchHHHHHHHhcccchHHHHHH
Confidence 3468999999999999993322 12233344443111111000
Q ss_pred -cccCCCCCCCCCCCCCCCC--CC------CCccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhH
Q 006240 573 -RELNPKTLSSGLDDYPRAS--HP------SEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFL 643 (655)
Q Consensus 573 -~elNp~tL~SGLDDYPRa~--~p------~~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~l 643 (655)
++|- -.=.||.|=.-|.- ++ ...-.-|||+.-+.--+++|+-+....|..+++ +.|+..++.+. ..+
T Consensus 322 ~~~l~-~~aesg~DfSsrw~~~~~t~~~~~t~~~vpvDLN~~~~~~~~i~~y~~~~~Gd~~~s-~~~~~k~~~r~--~~i 397 (600)
T KOG0602|consen 322 YQDLA-AAAESGWDFSSRWFAVNGTLSSIGTTDLVPVDLNLLYKWNADIMKYFYVVDGDPKDS-AQFEKKSEQRR--AAI 397 (600)
T ss_pred HHHHh-hcCcccchhHHHhhccCCcccccccccccccchHHHHHhhHHHHhhhcccCCChhHH-HHHHHHHHHHH--HHH
Confidence 0000 02346666544432 12 223567999988888899999999999999776 89999999999 999
Q ss_pred hhhcccccCCC
Q 006240 644 ISFILILHTEL 654 (655)
Q Consensus 644 n~~hws~~~~~ 654 (655)
|+.+|||+++.
T Consensus 398 ~~vlWde~~g~ 408 (600)
T KOG0602|consen 398 QEVLWDEEDGA 408 (600)
T ss_pred HHhccCCCCCc
Confidence 99999999874
No 13
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=94.48 E-value=0.049 Score=59.70 Aligned_cols=157 Identities=13% Similarity=0.161 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhccCCC-------------------CCcccccccChh---hhhcCCccccccC--CCCCCCcchHHHH
Q 006240 457 VRICLDILGHWLDLMNTD-------------------GWIPREQILGAE---ALSKVPEEFVLQH--PTNGNPPTLFLVL 512 (655)
Q Consensus 457 ~~l~~eil~~W~dlm~~d-------------------GWIpREQILG~E---ARs~VP~eF~vQ~--p~~aNPPTl~l~l 512 (655)
|+|.+.++..+.+.+..+ |-||+. ||.. -..+++ .+..|. +..-.+|.++|.+
T Consensus 32 P~Le~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~vphd--lg~p~~~P~~~~n-~y~~~~~~~~~D~~~~fVL~v 108 (365)
T PF04685_consen 32 PELERSMQRDFADAILSEDNTERKILYDGKIAPRKVRGAVPHD--LGSPFDDPWDRTN-AYNYHDVYAWKDLNPKFVLQV 108 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-ccccccccccccccccccccc
Confidence 788899999999988654 999988 3422 111111 111121 1222455555554
Q ss_pred HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CCCcceeeeCCCCcccccCCCCCCCCCCCCCCC
Q 006240 513 RELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQS-GK-EMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRA 590 (655)
Q Consensus 513 ~~ll~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ~-G~-~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa 590 (655)
-+.... ....+||++.||++++-.+|-.+... |+ +++ +. ..--..+|+....
T Consensus 109 yr~~~~-----------TGD~~fL~~~wp~v~~a~~~~~~~D~d~dGl~e-----~~----------g~~D~TyD~~~~~ 162 (365)
T PF04685_consen 109 YRDYKW-----------TGDRDFLKEMWPAVKKAMDYLLSWDRDGDGLPE-----NP----------GHPDQTYDDWSMY 162 (365)
T ss_dssp -------------------------EHHHHHHHHHHHHHHSB--TTS-BE-----EE----------T---SSSTT-EEE
T ss_pred cccccc-----------cccchhhhhHHHHHHHHHHHHHhhCCCCCCCCC-----CC----------CCCccccccCCee
Confidence 443332 23457999999999999999986322 11 210 10 0111345555432
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhccccc
Q 006240 591 SHPSEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILH 651 (655)
Q Consensus 591 ~~p~~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~ 651 (655)
.|+ .-..--|++ +-++|++||+.||+++.+ ++|++.++..+ +.+|+..|+.+
T Consensus 163 -G~s----ay~~~L~la-AL~A~~emA~~lgd~~~a-~~y~~~~~~~~--~~~~~~LWnGe 214 (365)
T PF04685_consen 163 -GPS----AYCGGLWLA-ALRAAAEMAKILGDPELA-AKYRELAEKAK--KAFNKKLWNGE 214 (365)
T ss_dssp -EEE----HHHHHHHHH-HHHHHHHHHHHHT-HHHH-HHHHHHHHHHH--HHHHHHSEETT
T ss_pred -CCC----HHHHHHHHH-HHHHHHHHHHHCCCHHHH-HHHHHHHHHHH--HHHHHHhhCHh
Confidence 121 122222322 337899999999998775 89999999999 99999999764
No 14
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=94.03 E-value=1.5 Score=51.72 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=112.6
Q ss_pred CCcchhhHhhhHHHhh-hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHH
Q 006240 440 GFLWDEGFHQLLIWRW-DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYA 518 (655)
Q Consensus 440 GFlWDEGFH~l~i~~W-D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~ 518 (655)
.|=+|-=.-++.+.-+ ++++|++.|.+-... .++|-||||- ...+|.+- =|.+..-.|-+++.+.+..+-
T Consensus 284 ~fGRD~lIS~lgll~~g~~elArg~L~~~a~~-~~~GkIPhe~------~~~~~~~~--~Y~tvD~t~~~i~~~~~y~~~ 354 (641)
T COG3408 284 PFGRDTLISALGLLLVGRFELARGTLNTLARY-SEPGKIPHEI------LLSIPGEP--YYNTVDATPLFIYLLGAYLKY 354 (641)
T ss_pred ccchHHHHHHHHHHhcCCHHHHHHHHHHHHhh-ccCCCCcchh------hhcCCCcc--eeccCCCcHHHHHHHHHHHHH
Confidence 4678888888999999 999999999999888 7789999995 11222111 122222233334444444443
Q ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHh-hcCC--CCCCcceeeeCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 006240 519 IKKNKFTATESNEISSFLERALVRLEAWFQWFNT-TQSG--KEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHPSE 595 (655)
Q Consensus 519 ~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~-TQ~G--~~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p~~ 595 (655)
....+|++++.|.+..=.+|+.+ ++.| .-...-.|.|..-+.. -.-.++.+--||+-.
T Consensus 355 -----------t~d~~~i~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~-----Ds~~~~~~~~~~~g~--- 415 (641)
T COG3408 355 -----------TGDTEFIRELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWM-----DSGDDIFAVTPRAGK--- 415 (641)
T ss_pred -----------hccHHHHHHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCe-----ecCCccccccCCCCC---
Confidence 34578999999999999999965 4443 1111223333221110 023344444444322
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccc
Q 006240 596 EERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILIL 650 (655)
Q Consensus 596 ~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~ 650 (655)
=|++.+=.+.+-++..++|..++..+++ ++|++.++.++ +..++--|.+
T Consensus 416 ---pi~i~al~~~~~~a~~~~a~ll~~~~~~-~~~~~~a~~l~--~~F~~~fw~~ 464 (641)
T COG3408 416 ---PVAINALQYYALKAALRLANLLGDEEDA-ARLEKIARRLK--ESFEAKFWNP 464 (641)
T ss_pred ---ceeHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHH--HHHHHHhhCc
Confidence 3455555555666777888888855554 79999999999 8888888886
No 15
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=93.34 E-value=1.8 Score=50.42 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=109.4
Q ss_pred CCCcc--hhhHhhhHHHhh-hhHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHH
Q 006240 439 RGFLW--DEGFHQLLIWRW-DVRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLREL 515 (655)
Q Consensus 439 RGFlW--DEGFH~l~i~~W-D~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~l 515 (655)
+++-| |-.|-.+-+..= +++.+.+.+.--++.+..||+.++-.-+.-+ ..|-....|...+|. .+.++..+
T Consensus 292 Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~---~~~~~~~~Q~D~~g~---~l~al~~y 365 (616)
T TIGR01577 292 YAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQSRDGSWQQRYYLNGR---LAPLQWGLQIDETGS---ILWAMDQH 365 (616)
T ss_pred CceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhCcCCCcceEEecCCC---CCCCCCCccccchhH---HHHHHHHH
Confidence 45555 777888888888 8999999988778899999976554322211 122123567777666 23344444
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhc-CC-CCCCcceeeeCCCCcccccCCCCCCCCCCCCCCCCCC
Q 006240 516 IYAIKKNKFTATESNEISSFLERALVRLEAWFQWFNTTQ-SG-KEMSSYFWHGRDTTTIRELNPKTLSSGLDDYPRASHP 593 (655)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~TQ-~G-~~~~~YrWrGR~~~~~~elNp~tL~SGLDDYPRa~~p 593 (655)
+.. ....+|+++++|.+++=.+|..+-. .+ +.+..=+|--|. | .
T Consensus 366 ~~~-----------t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~--------------G---------~ 411 (616)
T TIGR01577 366 YRL-----------TNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEERE--------------G---------V 411 (616)
T ss_pred HHH-----------HCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecC--------------C---------c
Confidence 333 1235789999999999999997622 11 111111232211 1 1
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccChhhHhhhcccccCC
Q 006240 594 SEEERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEYGSTATLLSDFKFLISFILILHTE 653 (655)
Q Consensus 594 ~~~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y~~~~~~l~d~~~ln~~hws~~~~ 653 (655)
--+.-+.||.|| +++++||+.+|.++. +++|.+.++.++ +.+++..|+++.+
T Consensus 412 ---~~~t~a~~~aAL--~~aa~lA~~lGd~~~-a~~~~~~Ad~ik--~~i~~~~w~~~~g 463 (616)
T TIGR01577 412 ---FTYTASAVYGGL--DAAAAVADKLGEKRL-AQNWKKAAEFIK--RAVEERFWLPERQ 463 (616)
T ss_pred ---cCccHHHHHHHH--HHHHHHHHHcCChHH-HHHHHHHHHHHH--HHHHHhccCCCCC
Confidence 123347888887 558899999999854 479999999999 8889999998653
No 16
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=90.29 E-value=4 Score=47.16 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=126.7
Q ss_pred CCcchhhHhhhHHHhhh-hHHHHHHHHHHHhccCCCCCcccccccChhhhhcCCccccccCCCCCCCcchHHHHHHHHHH
Q 006240 440 GFLWDEGFHQLLIWRWD-VRICLDILGHWLDLMNTDGWIPREQILGAEALSKVPEEFVLQHPTNGNPPTLFLVLRELIYA 518 (655)
Q Consensus 440 GFlWDEGFH~l~i~~WD-~~l~~eil~~W~dlm~~dGWIpREQILG~EARs~VP~eF~vQ~p~~aNPPTl~l~l~~ll~~ 518 (655)
=++||+=|-.|-+.+=+ .++++.++.+.+-.|+--|-||. .=.+-+-.-..||-|.+-+..+.++
T Consensus 172 lYyWDsYf~~lGL~esgr~d~a~~Mv~nF~~~Ie~yG~IpN--------------gnRtYyLsRSQPPff~~Mv~~~~~~ 237 (558)
T COG1626 172 LYYWDSYFTMLGLAESGRWDLAKGMVDNFAYEIETYGHIPN--------------GNRTYYLSRSQPPFFALMVELVAEH 237 (558)
T ss_pred chHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhccccC--------------CceeeEeecCCCCcHHHHHHHHHHh
Confidence 47999999888776422 24678888888888887777664 3345566677899998777777765
Q ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHh----hcCCCC------------CC--cceeeeCCCCccccc-----
Q 006240 519 IKKNKFTATESNEISSFLERALVRLEAWFQWFNT----TQSGKE------------MS--SYFWHGRDTTTIREL----- 575 (655)
Q Consensus 519 ~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~~----TQ~G~~------------~~--~YrWrGR~~~~~~el----- 575 (655)
. ..+++++.+|.|++-|..+.. .|.+.. |+ .=.|..++.-.. |.
T Consensus 238 ~------------g~~~~~r~l~~~~key~~w~~~~~~l~~~~~~~~~~~~~dG~~pe~ln~y~dd~~tpr~-Esy~~t~ 304 (558)
T COG1626 238 E------------GVAALKRYLPALIKEYAYWMDGVPSLQPKQGYSRVVTLGDGSPPEVLNRYWDDRDTPRQ-ESYHETI 304 (558)
T ss_pred h------------cHHHHHHHHHHHHHHHHHHhccCcccCccccceeEEecCCCCchhhhhhhhcccCCccc-hhhhhhH
Confidence 2 247888999999998875544 222221 10 112333321100 00
Q ss_pred -----C--C----------CCCCCCCCCCCCCCC-----CCC---ccccchHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Q 006240 576 -----N--P----------KTLSSGLDDYPRASH-----PSE---EERHLDLRCWMLLAVDSLHSIAELFESSSEHKKEY 630 (655)
Q Consensus 576 -----N--p----------~tL~SGLDDYPRa~~-----p~~---~E~HvDL~sWm~~~a~~m~~iA~~lg~~~d~~~~y 630 (655)
| | ..=.||.|=.+|.-. ++. .-.=|||.+=|..+-..++++.+..|..+.+ ++|
T Consensus 305 ~~a~~~~~r~~~eiy~~dRA~reSGwD~ssRw~g~~~~LasIrt~~~~p~dlna~~y~~e~~~~~~~~~~~~~~~~-e~~ 383 (558)
T COG1626 305 ATAKHNPERPLDEIYRDDRAGRESGWDFSSRWLGVPAPLASIRTTSILPVDLNALLYKLEEIIANISAIKGDKETA-ERY 383 (558)
T ss_pred HHhhcCcCCChHhhhcchhhhHhccCcccccccCCCccccceeccccchhhhhhHHHHHHHHHHHHHHhcCchHHH-HHH
Confidence 0 0 034688988888752 222 2467999999999999999999999965554 799
Q ss_pred HHHHHhccChhhHhhhcccccCCC
Q 006240 631 GSTATLLSDFKFLISFILILHTEL 654 (655)
Q Consensus 631 ~~~~~~l~d~~~ln~~hws~~~~~ 654 (655)
...++.=. ..+|+++|+++++.
T Consensus 384 ~~~A~~R~--~aI~~ylW~~e~G~ 405 (558)
T COG1626 384 QRKAEARR--CAINKYLWDDEAGQ 405 (558)
T ss_pred HHHHHHHH--HHHHHHccccccce
Confidence 99988877 89999999998764
No 17
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=25.49 E-value=60 Score=28.83 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHHHhhcccceeeeccceecCC
Q 006240 377 LDSESVVVGKAAIGNMLGGIGYFYGQSKVSLP 408 (655)
Q Consensus 377 ~~~~~~~fakaalSNLLGGIGYFYG~s~V~~~ 408 (655)
.....+.-.+.+|.+||||-.||- +-|..+
T Consensus 45 ~~~~~~~~v~~~L~~lLg~~~~~~--~~v~tp 74 (93)
T PF08368_consen 45 QPSPLQQEVQEALKSLLGGENYFR--SNVITP 74 (93)
T ss_pred CCchHHHHHHHHHHHHhCCccceE--EccccC
Confidence 333446678999999999999987 445544
No 18
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=23.84 E-value=41 Score=36.11 Aligned_cols=46 Identities=33% Similarity=0.610 Sum_probs=33.5
Q ss_pred ceeeeccceecCCccccccccCCccccCCccccccCCCCCCCCCCCcchhhHhhhHHHhhhhHHHHHHHHHHH
Q 006240 396 IGYFYGQSKVSLPKNTKLKNHDNFLLYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDVRICLDILGHWL 468 (655)
Q Consensus 396 IGYFYG~s~V~~~~~~~~~~~~~~~~~~p~~LfTaVPSR~fFPRGFlWDEGFH~l~i~~WD~~l~~eil~~W~ 468 (655)
.|||||+|.+.-|. =+.|||=|..--| ++|.+-|..||.+.=..|=
T Consensus 312 fghfygssy~aapd------------------~srtp~lsr~rdg---------llia~ldlnlcrq~kd~wg 357 (387)
T KOG0808|consen 312 FGHFYGSSYFAAPD------------------ASRTPSLSRYRDG---------LLIADLDLNLCRQYKDKWG 357 (387)
T ss_pred ccccccceeeecCC------------------CCCCccccccccc---------eEEeecchHHHHHhhhhhc
Confidence 58999999986431 2345655554433 6789999999999999993
No 19
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.41 E-value=45 Score=31.31 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHHhc
Q 006240 52 MLLGFTVFTFFIIWFLINRL 71 (655)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~ 71 (655)
++++|+|+++|+++|++...
T Consensus 3 ~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 45666666666555554433
No 20
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=23.29 E-value=8.1e+02 Score=29.58 Aligned_cols=94 Identities=20% Similarity=0.399 Sum_probs=53.9
Q ss_pred hHhhhHHHhhhhHHHHHHHHHHHhccC-CC------CC------------cccccccC--hhhhhcCCccccccCC---C
Q 006240 446 GFHQLLIWRWDVRICLDILGHWLDLMN-TD------GW------------IPREQILG--AEALSKVPEEFVLQHP---T 501 (655)
Q Consensus 446 GFH~l~i~~WD~~l~~eil~~W~dlm~-~d------GW------------IpREQILG--~EARs~VP~eF~vQ~p---~ 501 (655)
+|-+|++ =++|.+-++....+-+. +| |. +|+. || .+...+.=.+ -.|.| .
T Consensus 368 sfgllll---fPeLek~~~~~f~~~i~~eD~~~~v~gy~~~~~~~k~~~~tphD--Lg~~ehs~e~~iy~-t~~d~~~wk 441 (721)
T COG4354 368 SFGLLLL---FPELEKSVMRAFARAIPKEDTEYRVIGYAFPEAERKKDPATPHD--LGPNEHSIEKPIYG-TYQDPNLWK 441 (721)
T ss_pred CchHHHH---hHHHHHHHHHHHHHhccccCCceeeeeeccchhhccCCCCCCcc--cCccccchhccccc-ccCCchhhh
Confidence 4444444 58999999998888776 66 55 5554 34 2221111100 12233 1
Q ss_pred CCCCcchHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHH-hhcCCC
Q 006240 502 NGNPPTLFLVLRELIYAIKKNKFTATESNEISSFLERALVRLEAWFQWFN-TTQSGK 557 (655)
Q Consensus 502 ~aNPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~fL~~~yprL~~wy~WF~-~TQ~G~ 557 (655)
.-||--.+|+-+.++-- .+.+||++.||.+.+=.+|.. .+|.++
T Consensus 442 Dlgp~fVLlvYrdf~~T------------~D~eFL~e~y~~iv~~iD~~~~~d~d~D 486 (721)
T COG4354 442 DLGPDFVLLVYRDFKFT------------NDREFLKEVYPVIVEAIDWLKRFDQDND 486 (721)
T ss_pred hcCCcEEeeehhhhhhc------------ccHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 22333334443333321 346899999999999999994 566544
Done!