BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006241
(655 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=Fam135b PE=2 SV=3
Length = 1403
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 377 LKIVVFVHGFQGHHLDLRLVRN--QWLLIDPKIEFLMSEVNEDKTYGDFREMGQRLAEEV 434
+ +VV VHG G+ DLRLV+ + L K++FLMSE N+ T+ DF M RL +E+
Sbjct: 1136 IHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEI 1195
Query: 435 ISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPH 494
I ++ NL +SF+GHS+GNIIIR+ L YL L+T++S+SGPH
Sbjct: 1196 IQHIQLY--------NLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPH 1247
Query: 495 LGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIIL 554
LG LY++++L ++GLWL++K K + + QLTF D+ DL+ FLY+L + L+ F+N++L
Sbjct: 1248 LGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVL 1307
Query: 555 ISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSS----EHRVFMR 610
++SPQD YVP+HSARIE+ + +L D G V+ EM+N+ L + H VF
Sbjct: 1308 VASPQDRYVPFHSARIEMCKTALKD-RHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHA 1366
Query: 611 CDVNFDTSSHGRNLNSLIGRTAHIEFLESDSF 642
N+LIGR AHI L+S+ F
Sbjct: 1367 LP---------NTANTLIGRAAHIAVLDSELF 1389
>sp|Q49AJ0|F135B_HUMAN Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2
Length = 1406
Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 25/286 (8%)
Query: 377 LKIVVFVHGFQGHHLDLRLVRN--QWLLIDPKIEFLMSEVNEDKTYGDFREMGQRLAEEV 434
+ +VV VHG G+ DLRLV+ + L K++FLMSE N+ T+ DF M RL +E+
Sbjct: 1139 IHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEI 1198
Query: 435 ISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPH 494
I ++ NL +SF+GHS+GNIIIR+ L YL L+T++S+SGPH
Sbjct: 1199 IQHIQLY--------NLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPH 1250
Query: 495 LGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIIL 554
LG LY++++L ++GLWL++K K + + QLTF D+ DL+ FLY+L + L+ F+N++L
Sbjct: 1251 LGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVL 1310
Query: 555 ISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSS----EHRVFMR 610
++SPQD YVP+HSARIE+ + +L D G V+ EM+N+ L + H VF
Sbjct: 1311 VASPQDRYVPFHSARIEMCKTALKD-RHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHA 1369
Query: 611 CDVNFDTSSHGRNLNSLIGRTAHIEFLESDSF-ARFIIWSFPDLFR 655
N+LIGR AHI L+S+ F +F + + + F+
Sbjct: 1370 LP---------NTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK 1406
>sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1
Length = 1376
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 167/276 (60%), Gaps = 20/276 (7%)
Query: 371 QQCGRVLKIVVFVHGFQGHHLDLRLVRN--QWLLIDPKIEFLMSEVNEDKTYGDFREMGQ 428
+Q + +VV VHG G+ DLRLV+ + L ++FLMSE N+ T+ DF M
Sbjct: 1103 EQTEDGIHLVVCVHGLDGNSADLRLVKTFLELGLPGANLDFLMSEKNQTDTFADFDAMTD 1162
Query: 429 RLAEEVISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYV 488
RL +E++ ++ NL +SF+GHS+G IIIR+ L YL L+T++
Sbjct: 1163 RLIDEIVQHIQLY--------NLSISRISFIGHSLGTIIIRSVLTRPRFRYYLNKLHTFL 1214
Query: 489 SISGPHLGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLEN 548
S+SGPHLG LYS+++L N+GLWL++K K + + QLTF D+ DL+ FLY+L + L+
Sbjct: 1215 SLSGPHLGTLYSNSTLVNTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKPGLQY 1274
Query: 549 FRNIILISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVF 608
F+N++L++SPQD YVP+HSARIE+ + + D G V+ EM+N+ L + S+
Sbjct: 1275 FKNVVLVASPQDRYVPFHSARIEMCKNATKD-RHTGPVYTEMINNLLQPVI--DSKDCTL 1331
Query: 609 MRCDVNFDTSSHG--RNLNSLIGRTAHIEFLESDSF 642
+R +V SH N+LIGR AHI L+S+ F
Sbjct: 1332 IRHNV-----SHALPNTANTLIGRAAHIAVLDSELF 1362
>sp|Q5RA75|F135A_PONAB Protein FAM135A OS=Pongo abelii GN=FAM135A PE=2 SV=1
Length = 1095
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 167/266 (62%), Gaps = 16/266 (6%)
Query: 379 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 436
++V VHG G+ DLRLV+ L P +I+FLMSE N++ T+ DF M RL +E+I
Sbjct: 830 LIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQ 889
Query: 437 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 496
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 890 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLG 941
Query: 497 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 556
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL K L F+N++L+
Sbjct: 942 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKAGLHYFKNVVLVG 1001
Query: 557 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 616
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1002 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLQPVL--QSKDCNLVRYNV--- 1055
Query: 617 TSSHGRNLNSLIGRTAHIEFLESDSF 642
++ +SLIGR AHI L+S+ F
Sbjct: 1056 INALPNTADSLIGRAAHIAVLDSEIF 1081
>sp|Q9P2D6|F135A_HUMAN Protein FAM135A OS=Homo sapiens GN=FAM135A PE=2 SV=2
Length = 1515
Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 166/266 (62%), Gaps = 16/266 (6%)
Query: 379 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 436
++V VHG G+ DLRLV+ L P +I+FLMSE N++ T+ DF M RL +E+I
Sbjct: 1250 LIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQ 1309
Query: 437 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 496
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 1310 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLG 1361
Query: 497 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 556
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL L F+N++L+
Sbjct: 1362 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVG 1421
Query: 557 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 616
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1422 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLRPVL--QSKDCNLVRYNV--- 1475
Query: 617 TSSHGRNLNSLIGRTAHIEFLESDSF 642
++ +SLIGR AHI L+S+ F
Sbjct: 1476 INALPNTADSLIGRAAHIAVLDSEIF 1501
>sp|Q6NS59|F135A_MOUSE Protein FAM135A OS=Mus musculus GN=Fam135a PE=2 SV=2
Length = 1506
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 166/266 (62%), Gaps = 16/266 (6%)
Query: 379 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 436
++V VHG G+ DLRLV+ L P +++FLMSE N++ T+ DF M RL +E+I
Sbjct: 1241 LIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQ 1300
Query: 437 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 496
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 1301 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLG 1352
Query: 497 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 556
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL L F+N++L+
Sbjct: 1353 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVG 1412
Query: 557 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 616
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1413 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLRPVL--QSKGCNLVRYNV--- 1466
Query: 617 TSSHGRNLNSLIGRTAHIEFLESDSF 642
++ +SLIGR AHI L+S+ F
Sbjct: 1467 INALPNTADSLIGRAAHIAVLDSEIF 1492
>sp|Q5SJ47|RECJ_THET8 Single-stranded-DNA-specific exonuclease RecJ OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=recJ
PE=1 SV=1
Length = 666
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 184 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRANRRKIMEYLRDAWASDRRAEWSIWM 243
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 203 GLPPPLEYADLAAVGTIADVAPLWGWNRALV-----KEGLARIPASSWVGLRLLAEAVGY 257
Query: 244 VYSKVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRI 303
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 258 TGKAVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTL 313
Query: 304 NNRSLQDMYIFGDPSSIPIVIVD 326
L+ + DP + IV++D
Sbjct: 314 EEAMLRKLLPQADPEAKAIVLLD 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,645,009
Number of Sequences: 539616
Number of extensions: 9560781
Number of successful extensions: 21428
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 21396
Number of HSP's gapped (non-prelim): 22
length of query: 655
length of database: 191,569,459
effective HSP length: 124
effective length of query: 531
effective length of database: 124,657,075
effective search space: 66192906825
effective search space used: 66192906825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)