BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006245
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WV1|A Chain A, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 169-186 Substituted By A Linker Containing Two
Thrombin Sites
pdb|2WV1|B Chain B, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 169-186 Substituted By A Linker Containing Two
Thrombin Sites
Length = 202
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 205 NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQ 264
N LR+YL H++E+ ++ LAY E ++ RL++ Y + E Q
Sbjct: 83 NALREYLTVFTTHIKENPEIGTLAYE--------EIIKESARLEKIKPYFIGSFE----Q 130
Query: 265 LKQ 267
LK+
Sbjct: 131 LKE 133
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 119 LVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQ---YKVLLVH-LYSHLGALPLAY--EW 172
++QL W T+ + YF + + L+ L R + K L +H + S + P +Y E
Sbjct: 240 ILQLVWHTTVW-YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 173 YKALDVKNILMETVS--HHILPQMLVSSLWVE-SNNLLRDYLRFMDDHLRESADLTFLAY 229
+ +++KN + H + P + L ++ SNNLL D + HL E L
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 230 RHRNYSKVIEFVQFKERLQR 249
+ + SK+ E + LQ+
Sbjct: 359 QLKELSKIAEMTTQMKSLQQ 378
>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 287 DFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYLLG 323
DFL ++I V +E +PWW+ + D YL G
Sbjct: 244 DFLAEVSKITGLPVVTDESTLRQPWWSASVDSTYLTG 280
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 287 DFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYLLG 323
DFL ++I V +E +PWW+ + D YL G
Sbjct: 244 DFLAEVSKITGLPVVTDESTLRQPWWSASVDSTYLTG 280
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 287 DFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYLLG 323
DFL ++I V +E +PWW+ + D YL G
Sbjct: 244 DFLAEVSKITGLPVVTDESTLRQPWWSASVDSTYLTG 280
>pdb|2FX0|A Chain A, Crystal Structure Of Hlyiir, A Hemolysin Ii
Transcriptional Regulator
Length = 201
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 205 NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQ 264
N LR+YL H++E+ ++ LAY E ++ RL++ Y + E Q
Sbjct: 81 NALREYLTVFTTHIKENPEIGTLAYE--------EIIKESARLEKIKPYFIGSFE----Q 128
Query: 265 LKQ 267
LK+
Sbjct: 129 LKE 131
>pdb|2JK3|A Chain A, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 169-186 Substituted By Gssgssg Linker
pdb|2JK3|B Chain B, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 169-186 Substituted By Gssgssg Linker
Length = 188
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 205 NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQ 264
N LR+YL H++E+ ++ LAY E ++ RL++ Y + E Q
Sbjct: 79 NALREYLTVFTTHIKENPEIGTLAYE--------EIIKESARLEKIKPYFIGSFE----Q 126
Query: 265 LKQ 267
LK+
Sbjct: 127 LKE 129
>pdb|2JJ7|A Chain A, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 170-185 Substituted By Alanine
pdb|2JJ7|B Chain B, Crystal Structure Of The Hlyiir Mutant Protein With
Residues 170-185 Substituted By Alanine
Length = 186
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 205 NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQ 264
N LR+YL H++E+ ++ LAY E ++ RL++ Y + E Q
Sbjct: 81 NALREYLTVFTTHIKENPEIGTLAYE--------EIIKESARLEKIKPYFIGSFE----Q 128
Query: 265 LKQ 267
LK+
Sbjct: 129 LKE 131
>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From
Arabidopsis Thaliana Gene At1g07440
pdb|2Q45|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Putative Tropinone Reductase From Arabidopsis Thaliana
Gene At1g07440
Length = 266
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 370 KENFEVNGSICDPKVSSELKYLLDRYAKMLGFSL 403
K+ F+V GS+CD + E + L+ + M G L
Sbjct: 60 KKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKL 93
>pdb|3AES|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AES|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 287 DFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYLLG 323
DFL ++I V +E +PWW+ + D YL G
Sbjct: 244 DFLAEVSKITGLPVVTDESTLRQPWWSASVDSTYLTG 280
>pdb|1T0I|A Chain A, Ylr011wp, A Saccharomyces Cerevisiae Na(D)ph-Dependent Fmn
Reductase
pdb|1T0I|B Chain B, Ylr011wp, A Saccharomyces Cerevisiae Na(D)ph-Dependent Fmn
Reductase
Length = 191
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 93 SLPLSKDLDPQESIHGEELLSMASNVL 119
++PL +D+ PQ S+H EE+L + ++ +
Sbjct: 159 TIPLPEDIVPQLSVHNEEILQLLASCI 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,742,157
Number of Sequences: 62578
Number of extensions: 671168
Number of successful extensions: 1673
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 14
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)