Query 006245
Match_columns 654
No_of_seqs 143 out of 202
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2053 Mitochondrial inherita 100.0 2.7E-93 5.9E-98 802.1 40.7 604 2-648 326-932 (932)
2 PF09797 NatB_MDM20: N-acetylt 100.0 2.5E-62 5.5E-67 524.6 32.6 295 2-306 70-365 (365)
3 PF14559 TPR_19: Tetratricopep 92.4 0.36 7.8E-06 38.8 5.8 50 130-179 5-54 (68)
4 PF13432 TPR_16: Tetratricopep 85.7 1.8 3.9E-05 34.6 5.1 48 129-176 10-57 (65)
5 PF12569 NARP1: NMDA receptor- 83.5 81 0.0018 36.7 19.0 229 3-263 129-384 (517)
6 PF03704 BTAD: Bacterial trans 81.0 6.5 0.00014 36.5 7.6 59 115-176 64-122 (146)
7 PRK10370 formate-dependent nit 74.4 12 0.00026 37.5 7.7 105 129-237 52-163 (198)
8 PF12895 Apc3: Anaphase-promot 67.0 14 0.00031 31.1 5.5 45 131-175 4-50 (84)
9 PRK12370 invasion protein regu 64.7 59 0.0013 37.6 11.6 82 128-211 316-399 (553)
10 PF13371 TPR_9: Tetratricopept 64.6 12 0.00026 30.2 4.5 44 132-175 11-54 (73)
11 PF13414 TPR_11: TPR repeat; P 63.3 16 0.00035 29.2 5.0 47 129-175 16-63 (69)
12 TIGR02521 type_IV_pilW type IV 62.4 87 0.0019 29.5 10.6 46 131-176 80-125 (234)
13 COG3063 PilF Tfp pilus assembl 60.9 16 0.00036 38.3 5.5 73 114-186 33-106 (250)
14 PLN03088 SGT1, suppressor of 56.7 25 0.00054 38.4 6.5 47 130-176 16-62 (356)
15 KOG3679 Predicted coiled-coil 56.6 31 0.00067 38.4 7.0 36 127-169 630-665 (802)
16 PF09976 TPR_21: Tetratricopep 55.7 92 0.002 29.0 9.3 62 111-175 46-110 (145)
17 PRK10370 formate-dependent nit 51.7 24 0.00052 35.3 4.9 44 133-176 127-170 (198)
18 PRK14574 hmsH outer membrane p 51.2 1.1E+02 0.0023 37.8 11.1 113 125-242 114-227 (822)
19 TIGR02521 type_IV_pilW type IV 51.1 77 0.0017 29.8 8.1 46 131-176 46-91 (234)
20 PF12895 Apc3: Anaphase-promot 51.0 37 0.00081 28.5 5.4 59 109-175 25-83 (84)
21 TIGR02552 LcrH_SycD type III s 50.6 43 0.00093 30.1 6.0 45 131-175 32-76 (135)
22 PF12569 NARP1: NMDA receptor- 50.2 1.4E+02 0.0031 34.7 11.4 93 79-175 158-253 (517)
23 PRK09782 bacteriophage N4 rece 49.0 1.7E+02 0.0037 36.8 12.6 47 126-175 57-103 (987)
24 TIGR02917 PEP_TPR_lipo putativ 48.2 59 0.0013 37.7 8.1 52 130-181 70-121 (899)
25 PLN03088 SGT1, suppressor of 48.1 67 0.0015 35.1 8.1 46 130-175 50-95 (356)
26 cd00189 TPR Tetratricopeptide 46.9 37 0.0008 26.1 4.5 46 130-175 14-59 (100)
27 PRK11788 tetratricopeptide rep 45.6 67 0.0014 34.2 7.5 48 130-177 194-241 (389)
28 TIGR00990 3a0801s09 mitochondr 44.3 1.5E+02 0.0034 34.4 10.8 47 130-176 345-391 (615)
29 TIGR02552 LcrH_SycD type III s 43.9 46 0.001 29.8 5.2 44 131-174 66-109 (135)
30 COG2956 Predicted N-acetylgluc 42.1 53 0.0012 36.3 5.9 65 111-175 175-239 (389)
31 PRK15174 Vi polysaccharide exp 40.7 94 0.002 36.9 8.3 41 135-175 269-309 (656)
32 TIGR02795 tol_pal_ybgF tol-pal 40.5 55 0.0012 28.1 5.0 47 130-176 16-65 (119)
33 PRK11788 tetratricopeptide rep 40.0 1.3E+02 0.0028 32.1 8.6 43 134-176 53-95 (389)
34 PF13431 TPR_17: Tetratricopep 39.1 31 0.00068 24.9 2.6 32 139-170 2-33 (34)
35 PF08424 NRDE-2: NRDE-2, neces 38.7 1.9E+02 0.0041 31.2 9.6 53 130-182 45-97 (321)
36 cd00189 TPR Tetratricopeptide 38.4 1.8E+02 0.0038 22.2 8.1 46 130-175 48-93 (100)
37 KOG0367 Protein geranylgeranyl 38.4 1.9E+02 0.0041 31.7 9.2 104 15-122 112-218 (347)
38 KOG2002 TPR-containing nuclear 38.1 2.3E+02 0.005 35.5 10.9 189 100-306 591-801 (1018)
39 TIGR00540 hemY_coli hemY prote 37.7 51 0.0011 36.4 5.3 42 133-174 316-359 (409)
40 PLN03218 maturation of RBCL 1; 37.1 3.1E+02 0.0067 34.9 12.3 33 155-187 584-616 (1060)
41 TIGR02917 PEP_TPR_lipo putativ 36.8 1.5E+02 0.0033 34.4 9.1 42 134-175 619-660 (899)
42 COG4235 Cytochrome c biogenesi 34.9 1.9E+02 0.0041 31.3 8.7 111 128-239 134-248 (287)
43 PRK15359 type III secretion sy 31.9 75 0.0016 29.9 4.7 46 130-175 38-83 (144)
44 TIGR00990 3a0801s09 mitochondr 30.9 2.1E+02 0.0045 33.4 9.0 46 130-175 522-567 (615)
45 PF13041 PPR_2: PPR repeat fam 29.8 27 0.00059 26.7 1.1 37 155-191 8-44 (50)
46 PRK10747 putative protoheme IX 28.8 1.1E+02 0.0024 33.7 6.1 44 134-177 171-214 (398)
47 PRK15179 Vi polysaccharide bio 28.7 2.3E+02 0.005 34.3 9.0 83 129-215 133-219 (694)
48 PF09295 ChAPs: ChAPs (Chs5p-A 28.6 5.5E+02 0.012 29.0 11.4 87 80-175 139-225 (395)
49 PRK15359 type III secretion sy 28.3 1.3E+02 0.0028 28.4 5.6 47 129-175 71-117 (144)
50 PRK10747 putative protoheme IX 27.7 88 0.0019 34.5 5.0 63 132-196 310-372 (398)
51 PRK12370 invasion protein regu 26.8 1E+03 0.022 27.5 14.0 45 131-175 353-397 (553)
52 COG3629 DnrI DNA-binding trans 25.8 1.5E+02 0.0033 31.9 6.1 71 108-178 137-215 (280)
53 PF13428 TPR_14: Tetratricopep 24.3 76 0.0016 23.7 2.6 30 129-158 14-43 (44)
54 TIGR03302 OM_YfiO outer membra 23.9 1E+02 0.0023 30.5 4.3 49 130-178 180-231 (235)
55 KOG3785 Uncharacterized conser 23.1 95 0.0021 34.9 4.0 47 133-179 39-86 (557)
56 KOG1126 DNA-binding cell divis 22.6 4.6E+02 0.01 31.5 9.6 165 2-181 370-557 (638)
57 PLN03218 maturation of RBCL 1; 22.5 5.8E+02 0.013 32.6 11.1 71 117-190 476-547 (1060)
58 PRK10049 pgaA outer membrane p 22.2 2.5E+02 0.0054 33.9 7.8 47 130-176 63-109 (765)
59 TIGR02795 tol_pal_ybgF tol-pal 22.1 1.7E+02 0.0037 25.0 4.8 47 130-176 53-102 (119)
60 PF14559 TPR_19: Tetratricopep 22.0 2.8E+02 0.0061 21.7 5.8 43 110-159 26-68 (68)
61 PF13429 TPR_15: Tetratricopep 20.6 91 0.002 32.1 3.2 76 133-209 197-273 (280)
62 TIGR00756 PPR pentatricopeptid 20.5 50 0.0011 22.1 0.9 29 155-183 5-33 (35)
63 PRK10049 pgaA outer membrane p 20.4 2.2E+02 0.0047 34.5 6.7 48 130-177 373-420 (765)
64 KOG1173 Anaphase-promoting com 20.3 1.7E+02 0.0036 34.6 5.4 50 131-180 470-520 (611)
No 1
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-93 Score=802.05 Aligned_cols=604 Identities=27% Similarity=0.336 Sum_probs=553.3
Q ss_pred HHHHHHHHHcCCCcccHHHHHHhHhhCCHhHHHHHHHHHHhhccCCCccchhHHHHHHHHHHHHHHHcCcCCCchHHHHH
Q 006245 2 EAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELER 81 (654)
Q Consensus 2 e~L~~Yf~kFg~KpCCF~DLk~YL~~L~~ee~~~fle~l~~~v~~~ss~~~k~L~~~Ina~KL~r~lg~~~~ls~~e~~~ 81 (654)
|.+..||++||+|||||.|+++|+..|+++++..|++.+....+. ++.+++.++.|+|+.+++|++|.+..+|+++..+
T Consensus 326 e~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~-~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 326 EMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDD-SSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCc-chhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 467899999999999999999999999999999999988864433 4567899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCccCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Q 006245 82 SAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYS 161 (654)
Q Consensus 82 la~~l~~~Y~~sL~l~~~L~~TE~qpaDeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~ 161 (654)
++++|...|++++.+++++.+||+++||+|+++|+|.|+++|++++|..++++||++||+++++||||||+||||||||+
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHhcccCCchHHhhhhhhhhhhhcccCccchhhHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcchhhHH
Q 006245 162 HLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLWVESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFV 241 (654)
Q Consensus 162 lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rlst~p~~~~~~~ll~~~l~FY~~s~ket~e~I~~AFe~GSYSKI~efi 241 (654)
+|||++.|.++|..|||||||+|||||++|+|+.++|.++.+.+.++.+++||+++++|+||+|..||++|+||||+||+
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEML 564 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHhhhccccccccccccCCCccccccccccccccCCCCCCCCC
Q 006245 242 QFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYL 321 (654)
Q Consensus 242 eF~eRL~nSl~r~~~~vE~lrl~L~~~~~~~~e~~~vle~L~~~~~~le~~~Ei~~~~LsDNRDf~vfpswep~~~~~~l 321 (654)
.|++||+||.|++.+.+|+++++++.+.++.++.....+++ +..+.+++|+|.+|+|||||++||+|+|.+.+
T Consensus 565 ~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~----~l~~~e~~I~w~~L~DNRDl~~~~~w~p~~e~--- 637 (932)
T KOG2053|consen 565 AFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESM----KLPPSEDRIQWVSLSDNRDLNAIPYWDPEDEN--- 637 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhcc----ccCcchhhcccccccccccccccccCCCcchh---
Confidence 99999999999999999999999999998877765565544 34455577999999999999999999998774
Q ss_pred CCCCCccccc-cchhhhHHHHhhHHHHHHhhhhhhHHHHHHhhccccccchhhhcCCCcCccchhHHHHHHHHHHHHHhc
Q 006245 322 LGPFAGISYC-PKENLMKEREANILGVVERKSLLPRLIYLSIQTASACVKENFEVNGSICDPKVSSELKYLLDRYAKMLG 400 (654)
Q Consensus 322 ~~p~e~~~~~-p~e~~~~~~~~s~~~~l~~rsl~~rli~l~~~~~~~~~~e~~~~~g~~~~~~~~~e~~~ll~~~~~~~~ 400 (654)
..+| +||...+|.+-+-.|.+.+| |++++|++++.|.+..+.+.+++++ +.++..|+..++++|.+.++
T Consensus 638 ------~~~e~~k~s~kEe~~~l~~rSi~lr-Ll~~~i~l~h~~~~k~~~~salt~~---~mevl~el~~ll~~~t~~~~ 707 (932)
T KOG2053|consen 638 ------FAEELKKESFKEETEWLNLRSIFLR-LLRELIILAHPNGEKDLEKSALTAK---VMEVLRELELLLEQYTSVLI 707 (932)
T ss_pred ------hHHhhhhcChHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcchHHHHHhcc---chHHHHHHHHHHHHHHHhhh
Confidence 2223 66667776665555767777 8888889999999887888888887 78899999999999999999
Q ss_pred cchhhhhHHhhhccccccccccccchhHHHHHHHHHHHhhhccCccccccCCCCCCcchHHHHHHHHHHHHHHhhcCCcc
Q 006245 401 FSLRDAVEVVSGVSSGLNSSEAFGADMVGWLNFAVFLNAWNLSSHEVVLPDVNGCRHSTWQVVNTLLKKCILEVRSMESL 480 (654)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (654)
.+..++|++.+-.+.|++...-+++ ++|++||++.+... |++-.++++.+. ++++..-
T Consensus 708 ~~~~~liq~~~~~~~~~r~g~l~~s--------~~f~~~~~~lv~~~------------~~~s~~l~e~~~--v~t~i~t 765 (932)
T KOG2053|consen 708 PSASFLIQFPLLESQGVRLGDLLNS--------LEFLMAVPLLVKDL------------WSVSHPLLELTK--VRTEIIT 765 (932)
T ss_pred hhhHHhhhhhhhccccccccchhhh--------HHHHHHHHHHHHHH------------HhccchHHHHHH--HHHHHHH
Confidence 9999999999999999887755554 99999999988777 999999999998 4444433
Q ss_pred -ccccCccHHHHHHHhccchhHHHHHHHHHHhhcCCCCcccccCCCCC-CCCCcchhhHHhhHHhhhhHHHHHHHHHHhh
Q 006245 481 -VCYPQLDLSVLVQLVTEPLAWHTLVMQSCVRSSLPSGKKKKRSGSAD-HSTSPLSHDIRGSVQSTSGVVEEVAKWLGHH 558 (654)
Q Consensus 481 -~~~~~~~~~~~~~~~~e~~~w~~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (654)
+.++-.++++.||-.++|+.||-..+++|.+..+|++++++|...++ +..|++++|+.+.|+-.| .+.+..|.-.+
T Consensus 766 ~l~s~~~~~~~~~q~~~~~~~w~~~~~~~k~~~sl~~~~~~l~~i~s~~L~~s~~~~av~~pvk~~~--~kk~~~~~~t~ 843 (932)
T KOG2053|consen 766 DLISLLRIKDKEVQKEKLPLLWIVDGKLIKALQSLLSLYVFLKNIFSDKLKVSSVPTAVKEPVKLKG--DKKASVQAYTK 843 (932)
T ss_pred HHHHHHHHHHHHhhhccCCchhhhhHHHHhhHHHHHHHHHHHHHHHhhhhccccccccccchhhhhh--hhHHHHHHHHh
Confidence 55556789999999999999999999999999999999999999999 777899999999999999 89999999999
Q ss_pred hCCChhHHHHHHHHHHHhcCCCCCCchhHHhhhhhhhccchhhhhhhhhhhcccCChHHHHHHhhhhhhhHHHHHHHHhH
Q 006245 559 IKKSEDEKLDAIFSSLEANGRGEGPGQVFRLLGTLISSLNEAELGDRISQAMKSWSPVDVARKFVAGQRAGLSAFLRICE 638 (654)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (654)
+++||+.++..-+....+.+...+||+|..+++.+|+.-.+++.|.+|++++++ .++||.++.+..+..+++||+++|+
T Consensus 844 ~~~~e~~~~~~el~~~~~~~~~n~~~~i~g~~~~~lal~~E~~ids~i~~~l~~-~~~d~~~k~~~~~~~~~~e~~~l~e 922 (932)
T KOG2053|consen 844 LKKPECGQVLQELDRKLAENLSNIKNSILGYLKSFLALELESMIDSSIGPELEG-AKADVEGKHNPSASRLLREFLNLCE 922 (932)
T ss_pred hcchHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHhhhhhhccccccchhhhh-hhHhHhhhcchHHHHHHHHHHHHHH
Confidence 999999999999988888888889999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006245 639 SKIKSLQALK 648 (654)
Q Consensus 639 ~~~~~~~~~~ 648 (654)
+|++..+.+|
T Consensus 923 ~k~~~~~~lk 932 (932)
T KOG2053|consen 923 DKHTTIKKLK 932 (932)
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 2
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=100.00 E-value=2.5e-62 Score=524.60 Aligned_cols=295 Identities=35% Similarity=0.535 Sum_probs=269.4
Q ss_pred HHHHHHHHHcCCCcccHHHHHHhHhhCCHhHHHHHHHHHHhhccCCCccchhHHHHHHHHHHHHHHHcCcCCCchHHHHH
Q 006245 2 EAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELER 81 (654)
Q Consensus 2 e~L~~Yf~kFg~KpCCF~DLk~YL~~L~~ee~~~fle~l~~~v~~~ss~~~k~L~~~Ina~KL~r~lg~~~~ls~~e~~~ 81 (654)
+.|++||++||+|||||+||++|++.|+++++.+|++.+.+.+....+.+.+.++++||++|++|++|.+..++.++..+
T Consensus 70 ~~l~~Y~~~f~~K~cCf~DL~~Y~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl~r~~~~~~~~~~~~~~~ 149 (365)
T PF09797_consen 70 ELLEEYFDKFGSKPCCFDDLKPYLESLDPEERKELLEKLLEKIEADSKEDIKQLIRHINALKLSRFLGLHFSLSSESLLD 149 (365)
T ss_pred HHHHHHHHHhCCCCEeHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhcccccCChhhHHH
Confidence 68999999999999999999999999999999999999998765544567889999999999999999999999898888
Q ss_pred HHHHHHHHHHhhCCCCCCCCCccCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Q 006245 82 SAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYS 161 (654)
Q Consensus 82 la~~l~~~Y~~sL~l~~~L~~TE~qpaDeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~ 161 (654)
++.++++.|+++++++++++ ||++|+|+|+++|+++|+++|.++++.++|++||+|||+++++|||||++||||||||+
T Consensus 150 ~~~~~~~~y~~~l~~~~~l~-te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~ 228 (365)
T PF09797_consen 150 LAQELLKLYQESLSLGKDLK-TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYS 228 (365)
T ss_pred HHHHHHHHHHhhCccccccc-cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 99999999999999987666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHhcccCCchHHhhhhhhhhhhhcccCccchhhH-HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcchhhH
Q 006245 162 HLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLWVESN-NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEF 240 (654)
Q Consensus 162 lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rlst~p~~~~~~-~ll~~~l~FY~~s~ket~e~I~~AFe~GSYSKI~ef 240 (654)
+||++++|+++|..|||||||+|||||++++|+++.+...... +.++.+.+||.++.++++++++.||++|+|+||+||
T Consensus 229 ~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef 308 (365)
T PF09797_consen 229 LLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEF 308 (365)
T ss_pred HcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 9999999999999999999999999999999999866555554 889999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHhhhccccccccccccCCCcccccccc
Q 006245 241 VQFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFNEDW 306 (654)
Q Consensus 241 ieF~eRL~nSl~r~~~~vE~lrl~L~~~~~~~~e~~~vle~L~~~~~~le~~~Ei~~~~LsDNRDf 306 (654)
++|++||++|++|+++.+|++|++++.+.+..+.++.+.+ +..+.+++++++|||||
T Consensus 309 ~~F~~rL~~S~~~~~~~~E~~~l~~~~~~~~~~~~~~l~~---------~~~~~~~~~~l~DNRDf 365 (365)
T PF09797_consen 309 IEFRERLRNSLQRAMSRIERLRLSRLLGDKRFEELEYLVQ---------EDEDRIDWKTLSDNRDF 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHhh---------hhhcccccccCccCCCC
Confidence 9999999999999999999999998876655443334433 11233678899999998
No 3
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.43 E-value=0.36 Score=38.76 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVK 179 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK 179 (654)
+..-+|+.+++.++..+|.|..+++.+.++|...|-.+.|...+..+--+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998876433
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.74 E-value=1.8 Score=34.58 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
.+..-+|+.+++.++...|.|....+++-++|...|-...|...|+..
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999998753
No 5
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=83.51 E-value=81 Score=36.69 Aligned_cols=229 Identities=14% Similarity=0.131 Sum_probs=144.3
Q ss_pred HHHHHHHHcCCC--cccHHHHHHhHhhCCHhHHHHHHHHHH----hhccCC----------CccchhHHHHHHHHHHHHH
Q 006245 3 AVLEYFLSFGHL--ACFTSDVEDFLLVLSLDKKTELLERLK----SSSTSH----------STESIKELGWFITLKKIQE 66 (654)
Q Consensus 3 ~L~~Yf~kFg~K--pCCF~DLk~YL~~L~~ee~~~fle~l~----~~v~~~----------ss~~~k~L~~~Ina~KL~r 66 (654)
.+..|...+=.| |+-|.||++... +++. ...+..+. ...+.. ...|+.-++.....-+...
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~--d~~K-~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYK--DPEK-AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHc--ChhH-HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 567788888887 889999999754 3333 33333332 222111 0122333444433344433
Q ss_pred HHcCcCCCchHHHHHHHHHHHHHHHhhCCCCCCCCCccCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcC
Q 006245 67 LIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVR 146 (654)
Q Consensus 67 ~lg~~~~ls~~e~~~la~~l~~~Y~~sL~l~~~L~~TE~qpaDeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kS 146 (654)
.+|... + .+....+++.. .|| .-||-++=+.++= ..+.+.+|+..+|.+-.-+
T Consensus 206 ~~g~~~-----~-------Al~~Id~aI~h----tPt----~~ely~~KarilK-------h~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 206 YLGDYE-----K-------ALEYIDKAIEH----TPT----LVELYMTKARILK-------HAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HhCCHH-----H-------HHHHHHHHHhc----CCC----cHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHhCC
Confidence 444321 1 12222223211 112 1244444444443 3577889999999999999
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhhhhhcc--------c---CccchhhHHHHHHHHHHHH
Q 006245 147 RHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQML--------V---SSLWVESNNLLRDYLRFMD 215 (654)
Q Consensus 147 p~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rls--------t---~p~~~~~~~ll~~~l~FY~ 215 (654)
+.+--+.--.++-+++-|-...|.+.....--+.+ |.++.+.=-+.. + .+.+..+...+..+.++|.
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886665544444 444433311111 0 1223334566677888999
Q ss_pred HhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 006245 216 DHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSIL 263 (654)
Q Consensus 216 ~s~ket~e~I~~AFe~GSYSKI~efieF~eRL~nSl~r~~~~vE~lrl 263 (654)
....+-=+|-.-+++.|++-.-.+|+.+.++|...-.+.-...-.+++
T Consensus 337 ~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~i 384 (517)
T PF12569_consen 337 DFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRI 384 (517)
T ss_pred HHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 988899999999999999999999999999999988777666555544
No 6
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=81.00 E-value=6.5 Score=36.52 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 115 ASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 115 Aa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
++..+...+...++. -+|+.+++.++..+|+|=.+-..||++|...|-...|.++|+.+
T Consensus 64 ~~~~l~~~~~~~~~~---~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDY---EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-H---HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444334444 47888999999999999999999999999999999999999865
No 7
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=74.44 E-value=12 Score=37.49 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc---CCchHHhhhhhhhhhhhc--ccCcc--ch
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL---DVKNILMETVSHHILPQM--LVSSL--WV 201 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L---dIK~IQ~DTLgHlil~Rl--st~p~--~~ 201 (654)
....-+++..|+..+..+|.|.+....|-++|..+|-.+.|...|+.. +=++. + -|..+... ...+. ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~--~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--E--LYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H--HHHHHHHHHHHhcCCCCcH
Confidence 344467788899999999999999999999999999999999999752 22221 1 12222221 22222 23
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcch
Q 006245 202 ESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKV 237 (654)
Q Consensus 202 ~~~~ll~~~l~FY~~s~ket~e~I~~AFe~GSYSKI 237 (654)
++..+++.+++.--++..-....-..+|+.|.|.+-
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence 456666666655444444444445566677766643
No 8
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=66.99 E-value=14 Score=31.10 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhcCCC--chhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 131 YFMEAIMVLEFGLTVRRH--AWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~--NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
..-+|+.+.|.++..+|. +...-+.+...|...|-...|.+.++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345789999999999996 455566669999999999999999988
No 9
>PRK12370 invasion protein regulator; Provisional
Probab=64.73 E-value=59 Score=37.60 Aligned_cols=82 Identities=10% Similarity=-0.061 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc-CCchHHhhhhhhhhhhhccc-CccchhhHH
Q 006245 128 NYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL-DVKNILMETVSHHILPQMLV-SSLWVESNN 205 (654)
Q Consensus 128 d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L-dIK~IQ~DTLgHlil~Rlst-~p~~~~~~~ 205 (654)
..+..-+|+..++.++..+|.|......+-.+|...|-.+.|..+|+.. .+. -.+.-.|+.+..+.. .+.+..+..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456789999999999999999999999999999999999999999862 211 112224444443332 344444555
Q ss_pred HHHHHH
Q 006245 206 LLRDYL 211 (654)
Q Consensus 206 ll~~~l 211 (654)
.++.++
T Consensus 394 ~~~~Al 399 (553)
T PRK12370 394 TINECL 399 (553)
T ss_pred HHHHHH
Confidence 554444
No 10
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=64.59 E-value=12 Score=30.22 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 132 FMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 132 Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
.-+|+..+|.++..+|.++.+.+..-.+|..+|-...|.+.|+.
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 45788899999999999999999999999999999999888764
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=63.32 E-value=16 Score=29.15 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcC-ChHHHHHHhcc
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLG-ALPLAYEWYKA 175 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLG-a~s~A~~~y~~ 175 (654)
.+..-+|+..++.++..+|.|..+-..+-.+|..+| -...|.+.|+.
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 466788999999999999999999999999999999 79999888764
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=62.39 E-value=87 Score=29.46 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
..-+|+..++.++...|.+......+..+|...|-...|.+.|...
T Consensus 80 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3457888899999999999999999999999999999999999874
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.91 E-value=16 Score=38.28 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc-cCCchHHhhhh
Q 006245 114 MASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA-LDVKNILMETV 186 (654)
Q Consensus 114 LAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~-LdIK~IQ~DTL 186 (654)
.|+.+-+++.-.-=..+...+|-.-||.+|..+|+++..-+.+..+|..+|-.+.|.+.|+. |.++.=+=|-|
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh
Confidence 35555555532111223446788899999999999999999999999999999999999986 66665555544
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=56.74 E-value=25 Score=38.44 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+...+|+..++.++..+|.|..+.+.+..+|..+|-...|...++..
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999988753
No 15
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.62 E-value=31 Score=38.43 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHH
Q 006245 127 SNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLA 169 (654)
Q Consensus 127 ~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A 169 (654)
.+.++|+++..- =+..-|+-++||.|+-.|.+-..|
T Consensus 630 enqgnlfqsftr-------lksathlvillialwqklsadqva 665 (802)
T KOG3679|consen 630 ENQGNLFQSFTR-------LKSATHLVILLIALWQKLSADQVA 665 (802)
T ss_pred hccccHHHHHHh-------hhcchhHHHHHHHHHHHccchHHH
Confidence 455667776443 344567888999888888776655
No 16
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.67 E-value=92 Score=29.03 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCc---hhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 111 LLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHA---WQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 111 L~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~N---fqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
|..+|...+-+.+... +.+-+|+..|+.++.+.|.+ ...++.|.++|...|-.+.|+.++..
T Consensus 46 ya~~A~l~lA~~~~~~---g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQ---GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4444443343333333 45567999999999988655 56889999999999999999999866
No 17
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=51.69 E-value=24 Score=35.34 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 133 MEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 133 l~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
-+|..+|+.++..+|.|.....+|-..|..+|-.+.|..+|+.+
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999998874
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=51.22 E-value=1.1e+02 Score=37.76 Aligned_cols=113 Identities=7% Similarity=0.018 Sum_probs=76.4
Q ss_pred hcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhhhhhcccC-ccchhh
Q 006245 125 RTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLVS-SLWVES 203 (654)
Q Consensus 125 ~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rlst~-p~~~~~ 203 (654)
..++.. +|+.+++.+++.+|.|..+.+.|+.+|..+|-...|++.++++.-+.-.... ++....+... ....++
T Consensus 114 ~~gdyd---~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~--~l~layL~~~~~~~~~A 188 (822)
T PRK14574 114 NEKRWD---QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN--YMTLSYLNRATDRNYDA 188 (822)
T ss_pred HcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH--HHHHHHHHHhcchHHHH
Confidence 345555 9999999999999999999999999999999999999999987655443111 1222222211 111124
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcchhhHHH
Q 006245 204 NNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQ 242 (654)
Q Consensus 204 ~~ll~~~l~FY~~s~ket~e~I~~AFe~GSYSKI~efie 242 (654)
...++++....-.+..-..++...+=+.|...+-.+...
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 445555555544445555677777778888877776665
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=51.07 E-value=77 Score=29.83 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
..-+|+..++.++..+|.+......+..+|...|-...|.+.|+..
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4457888899999999999999999999999999999999998753
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=50.98 E-value=37 Score=28.50 Aligned_cols=59 Identities=22% Similarity=0.190 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 109 EELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 109 DeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+.+.+.-+.++... +.--+|+.+++. +..+|.|.....++.+.|..||-.+.|.++|..
T Consensus 25 ~~~~~~la~~~~~~-------~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQ-------GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHT-------THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34555456666653 555788999999 888999999999999999999999999998863
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=50.58 E-value=43 Score=30.06 Aligned_cols=45 Identities=16% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
..-+|+..++.++...|.|..+...+..+|...|-.+.|.+.|+.
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888999999999999999999999999999988875
No 22
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=50.19 E-value=1.4e+02 Score=34.74 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCcc---CCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHH
Q 006245 79 LERSAVQMSEMYCKSLPLSKDLDPQE---SIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVL 155 (654)
Q Consensus 79 ~~~la~~l~~~Y~~sL~l~~~L~~TE---~qpaDeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLL 155 (654)
....+.+++..|...+......+..+ ..|. ...+-+...|-+.|...++.. +|+..++.++..+|...++-++
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p-~~~lw~~~~lAqhyd~~g~~~---~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP-STLLWTLYFLAQHYDYLGDYE---KALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCc-hHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCcHHHHHH
Confidence 35677788888877764322222111 1221 122333334444444445544 9999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHhcc
Q 006245 156 LVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 156 LVrLY~lLGa~s~A~~~y~~ 175 (654)
--|||-..|-...|.+.++.
T Consensus 234 KarilKh~G~~~~Aa~~~~~ 253 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDE 253 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999876653
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=48.99 E-value=1.7e+02 Score=36.82 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=42.7
Q ss_pred cCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 126 TSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 126 t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
.++.. +|+..+++++..+|.|..+++.|.++|+.+|-.+.|....+.
T Consensus 57 ~Gd~~---~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~k 103 (987)
T PRK09782 57 NNDEA---TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLED 103 (987)
T ss_pred CCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35555 899999999999999999999999999999999999988775
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.24 E-value=59 Score=37.67 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchH
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNI 181 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~I 181 (654)
+..-+|+..++.++...|.+......+.++|...|..+.|.+++.....+.-
T Consensus 70 g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~ 121 (899)
T TIGR02917 70 GDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121 (899)
T ss_pred CCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCc
Confidence 4445688888888999999999999999999999999999999987654443
No 25
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.14 E-value=67 Score=35.14 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+..-+|+..++.++..+|.+....+.+-.+|..+|-...|...|+.
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999887753
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=46.90 E-value=37 Score=26.14 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+..-+|+..++.++...|.+......+..+|...|-...|.+.|..
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999888765
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=45.58 E-value=67 Score=34.25 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccC
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALD 177 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~Ld 177 (654)
+..-+|+..++.++...|.+....+.+.++|...|-...|.+.|+..-
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345567778888888888888888899999999999999998888753
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=44.32 E-value=1.5e+02 Score=34.43 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+..-+|+..++.++..+|.+.+..+.+..+|..+|-...|...|+..
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34457888999999999999999999999999999999999998864
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=43.92 E-value=46 Score=29.84 Aligned_cols=44 Identities=14% Similarity=0.008 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhc
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYK 174 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~ 174 (654)
..-+|+..++.++..+|.++.....+-.+|...|-...|.+.|+
T Consensus 66 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 66 EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34588889999999999999999999999999999999999886
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=42.09 E-value=53 Score=36.28 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 111 LLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 111 L~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+-+..|+....+.......+.+-+|..+|+.++.-+|.+-...+.|=++++..|-.+.|.+.|+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 34455566666555555566777899999999999999999999999999999999999998875
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=40.69 E-value=94 Score=36.90 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=21.2
Q ss_pred HHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 135 AIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 135 AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
|+..++.++..+|.+......+..+|...|-...|...|+.
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555544443
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=40.51 E-value=55 Score=28.09 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhcCCCc---hhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 130 GYFMEAIMVLEFGLTVRRHA---WQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~N---fqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+..-+|+..++.++...|.+ .+..+++.++|...|-...|...|+.+
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44567888888888877765 678999999999999999999998864
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=39.98 E-value=1.3e+02 Score=32.12 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 134 EAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 134 ~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+|+..++.++..+|.|......+..+|...|-.+.|...|+.+
T Consensus 53 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 95 (389)
T PRK11788 53 KAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL 95 (389)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998864
No 34
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=39.13 E-value=31 Score=24.85 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHhhhhcCCCchhHHHHHHHHHHHcCChHHHH
Q 006245 139 LEFGLTVRRHAWQYKVLLVHLYSHLGALPLAY 170 (654)
Q Consensus 139 LE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~ 170 (654)
.+.++..+|.|+.....|-.+|...|=...|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46778999999999999999999999888774
No 35
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.66 E-value=1.9e+02 Score=31.24 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchHH
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNIL 182 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ 182 (654)
...-+-+.|||.||+++|++..+.+..++++..+.-.+...+.|+.+=.++..
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Confidence 34456799999999999999999999999999999888777888776555443
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=38.43 E-value=1.8e+02 Score=22.16 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+..-+|+..++.++...|.+......+..+|...|-...|...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556788899999999999999999999999999999999888765
No 37
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.37 E-value=1.9e+02 Score=31.71 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=74.0
Q ss_pred cccHHHHHHhHhhCCHhHHHHHHHHHHhhccC--CC-ccchhHHHHHHHHHHHHHHHcCcCCCchHHHHHHHHHHHHHHH
Q 006245 15 ACFTSDVEDFLLVLSLDKKTELLERLKSSSTS--HS-TESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYC 91 (654)
Q Consensus 15 pCCF~DLk~YL~~L~~ee~~~fle~l~~~v~~--~s-s~~~k~L~~~Ina~KL~r~lg~~~~ls~~e~~~la~~l~~~Y~ 91 (654)
.||-.+|-..+..++.+....|+..+...-+. .. --...+++..-+|.-|+++++.-..++.+...+++.++ +.|.
T Consensus 112 l~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~-q~Yd 190 (347)
T KOG0367|consen 112 LACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSS-QRYD 190 (347)
T ss_pred HHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHh-hccc
Confidence 57888888888899988888888877753221 01 12345699999999999999966667777776666544 3565
Q ss_pred hhCCCCCCCCCccCCcchHHHHHHHHHHHHH
Q 006245 92 KSLPLSKDLDPQESIHGEELLSMASNVLVQL 122 (654)
Q Consensus 92 ~sL~l~~~L~~TE~qpaDeL~LLAa~~Ll~l 122 (654)
-+.... +-.|..-+..||-+|.-+|+..
T Consensus 191 gGfg~~---pg~EsHgG~TfCAlAsL~L~~~ 218 (347)
T KOG0367|consen 191 GGFGQH---PGGESHGGATFCALASLALMGK 218 (347)
T ss_pred cccccC---CCCCCCcchhHHHHHHHHHHhh
Confidence 554332 4578888999999999777654
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=38.15 E-value=2.3e+02 Score=35.45 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCccCCcchHHHHHHHH--HHHHHHhhcCCc----HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHh
Q 006245 100 LDPQESIHGEELLSMASN--VLVQLFWRTSNY----GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWY 173 (654)
Q Consensus 100 L~~TE~qpaDeL~LLAa~--~Ll~l~~~t~d~----~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y 173 (654)
+..|+.. .|.|.++|.- .+-.++....+. .+..+|+.+--.+|+.+|.|-..-==+--+...=|.++.|..+|
T Consensus 591 ~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Q ss_pred cccCCchHHhhhh---------hhhhhhhcccCccchhhHHHHHHHH-HHHHHhhHHHHHHHHHH-HhcCCCcchhhHHH
Q 006245 174 KALDVKNILMETV---------SHHILPQMLVSSLWVESNNLLRDYL-RFMDDHLRESADLTFLA-YRHRNYSKVIEFVQ 242 (654)
Q Consensus 174 ~~LdIK~IQ~DTL---------gHlil~Rlst~p~~~~~~~ll~~~l-~FY~~s~ket~e~I~~A-Fe~GSYSKI~efie 242 (654)
++|+-++- +|..+-+ +.+..+.+.++.++ +||..+..++-.++.+| |+.|-|-+-.+-..
T Consensus 670 -----sqVrEa~~~~~dv~lNlah~~~e~----~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 670 -----SQVREATSDFEDVWLNLAHCYVEQ----GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred -----HHHHHHHhhCCceeeeHHHHHHHH----HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred H--HHHHHhHHHHHHHHHHHHHHH---HhhcCCchhhHHHHHHhhhccccccccccccCCCcccccccc
Q 006245 243 F--KERLQRSSQYLVARVESSILQ---LKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFNEDW 306 (654)
Q Consensus 243 F--~eRL~nSl~r~~~~vE~lrl~---L~~~~~~~~e~~~vle~L~~~~~~le~~~Ei~~~~LsDNRDf 306 (654)
- +....+..-+.-..+...++. |.....+.++....++.+....+++.. +++|+|+
T Consensus 741 ~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~--------ls~~~d~ 801 (1018)
T KOG2002|consen 741 KARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE--------LSKNGDK 801 (1018)
T ss_pred HHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH--------HHhcCCC
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=37.70 E-value=51 Score=36.41 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhcCCCch--hHHHHHHHHHHHcCChHHHHHHhc
Q 006245 133 MEAIMVLEFGLTVRRHAW--QYKVLLVHLYSHLGALPLAYEWYK 174 (654)
Q Consensus 133 l~AI~LLE~~L~kSp~Nf--qlkLLLVrLY~lLGa~s~A~~~y~ 174 (654)
-.+...+|..++..|.|+ .+.+-+-++|...|-.+.|.++|+
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345667788888888888 888888888888888888888888
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=37.14 E-value=3.1e+02 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHcCChHHHHHHhcccCCchHHhhhhh
Q 006245 155 LLVHLYSHLGALPLAYEWYKALDVKNILMETVS 187 (654)
Q Consensus 155 LLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLg 187 (654)
.||..|+..|..+.|.+.|+.+.-+++.-|...
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 345566666666666666666555554444333
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=36.81 E-value=1.5e+02 Score=34.37 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 134 EAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 134 ~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+|+..++.++...|.+......+..+|...|-...|...|+.
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555555555555555555555555555555555544
No 42
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.88 E-value=1.9e+02 Score=31.33 Aligned_cols=111 Identities=21% Similarity=0.127 Sum_probs=77.2
Q ss_pred CcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc---cCCchHHhhhhhhhhhhhcccCccch-hh
Q 006245 128 NYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA---LDVKNILMETVSHHILPQMLVSSLWV-ES 203 (654)
Q Consensus 128 d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~---LdIK~IQ~DTLgHlil~Rlst~p~~~-~~ 203 (654)
+....-+.+.-||.-|.++|.|..-=.+|=++|+.+|-++-|...|+. |.=||.+.=..-=-++.+ +..+... .+
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~-~a~~~~ta~a 212 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY-QAGQQMTAKA 212 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCcccHHH
Confidence 344567778899999999999999999999999999999999988875 555665432111011111 1123322 46
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcchhh
Q 006245 204 NNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIE 239 (654)
Q Consensus 204 ~~ll~~~l~FY~~s~ket~e~I~~AFe~GSYSKI~e 239 (654)
.++++++++-=.++-+-..-.-..+|+.|.|-+-..
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 778888776644555566667778899998876443
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=31.88 E-value=75 Score=29.92 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+..-+|+..++.++..+|.+++....+-.++..+|-...|...|+.
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445677788888888888888888888888888888888888875
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=30.90 E-value=2.1e+02 Score=33.37 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
+.+-+|+.+++.++..+|.+....+.+.++|..+|-...|.+.|+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999877
No 45
>PF13041 PPR_2: PPR repeat family
Probab=29.78 E-value=27 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhhh
Q 006245 155 LLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHIL 191 (654)
Q Consensus 155 LLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil 191 (654)
-+|+-|..-|-.+.|.++|+.+.=++++-|+..|.++
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4788899999999999999999999998888877653
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.83 E-value=1.1e+02 Score=33.73 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccC
Q 006245 134 EAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALD 177 (654)
Q Consensus 134 ~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~Ld 177 (654)
+|+..++..+..+|+|.....++..+|...|-.+.|.+++..|.
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67788888899999999999999999999999888887777665
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.68 E-value=2.3e+02 Score=34.30 Aligned_cols=83 Identities=8% Similarity=0.021 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchH----HhhhhhhhhhhhcccCccchhhH
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNI----LMETVSHHILPQMLVSSLWVESN 204 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~I----Q~DTLgHlil~Rlst~p~~~~~~ 204 (654)
.+.+-+|....|.++..+|+|+.....+-.+...+|-...|...|+.+--.+- -+=++||.+-.+ |...++.
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~----G~~~~A~ 208 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR----GALWRAR 208 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHH
Confidence 46778899999999999999999999999999999999999999998765332 122445554432 4444555
Q ss_pred HHHHHHHHHHH
Q 006245 205 NLLRDYLRFMD 215 (654)
Q Consensus 205 ~ll~~~l~FY~ 215 (654)
..+..+.....
T Consensus 209 ~~~~~a~~~~~ 219 (694)
T PRK15179 209 DVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHhhC
Confidence 55555544433
No 48
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=28.56 E-value=5.5e+02 Score=28.99 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCccCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHH
Q 006245 80 ERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHL 159 (654)
Q Consensus 80 ~~la~~l~~~Y~~sL~l~~~L~~TE~qpaDeL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrL 159 (654)
..++..+-+.|..+..+|.+..-........+++-+ |+.....++. +-+|+.++|...+++|. .-++++++
T Consensus 139 ~~fi~~~~~~~~~G~~lG~~~~i~~~t~~~NyLv~~---Ll~~l~~t~~---~~~ai~lle~L~~~~pe---v~~~LA~v 209 (395)
T PF09295_consen 139 NNFIKLFPKLFERGWKLGSDPEIQVPTIVNNYLVDT---LLKYLSLTQR---YDEAIELLEKLRERDPE---VAVLLARV 209 (395)
T ss_pred HHHHHHHHHHhhcccccCCCCccCCCCCcchHHHHH---HHHHHhhccc---HHHHHHHHHHHHhcCCc---HHHHHHHH
Confidence 346777777888887777643333333334444433 3444333433 56789999999988875 56789999
Q ss_pred HHHcCChHHHHHHhcc
Q 006245 160 YSHLGALPLAYEWYKA 175 (654)
Q Consensus 160 Y~lLGa~s~A~~~y~~ 175 (654)
|...+--..|.+..+.
T Consensus 210 ~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHhcCcHHHHHHHHHH
Confidence 9988877777775543
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.30 E-value=1.3e+02 Score=28.37 Aligned_cols=47 Identities=15% Similarity=0.038 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
.+..-+|+..++.++..+|.+.....-+-..|..+|-...|...|+.
T Consensus 71 ~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 71 LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999865
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.74 E-value=88 Score=34.54 Aligned_cols=63 Identities=14% Similarity=-0.077 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhhhhhccc
Q 006245 132 FMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLV 196 (654)
Q Consensus 132 Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rlst 196 (654)
.-+++..+|..+++.|.|+.+++.+-++|...|-.+.|.+.|+.+=- +.-|.-.|+.+.++..
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALD 372 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999887431 2233444555555543
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=26.83 E-value=1e+03 Score=27.48 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA 175 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~ 175 (654)
..-+|+..++.++..+|.+......+-.+|...|-...|..+|+.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999987
No 52
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=25.78 E-value=1.5e+02 Score=31.93 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHhh--------cCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCC
Q 006245 108 GEELLSMASNVLVQLFWR--------TSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDV 178 (654)
Q Consensus 108 aDeL~LLAa~~Ll~l~~~--------t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdI 178 (654)
-+++++.--..+-+.+.. -..-+..-.++..|+.++..+|++=.....+++.|..-|..+.|..+|+.|.=
T Consensus 137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345555555555444321 12223334556788999999999999999999999999999999999998753
No 53
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=24.34 E-value=76 Score=23.67 Aligned_cols=30 Identities=20% Similarity=0.020 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q 006245 129 YGYFMEAIMVLEFGLTVRRHAWQYKVLLVH 158 (654)
Q Consensus 129 ~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVr 158 (654)
.+..-+|+.+++.+++..|.|......|.+
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355667899999999999999998887765
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=23.92 E-value=1e+02 Score=30.53 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhc---CCCchhHHHHHHHHHHHcCChHHHHHHhcccCC
Q 006245 130 GYFMEAIMVLEFGLTV---RRHAWQYKVLLVHLYSHLGALPLAYEWYKALDV 178 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~k---Sp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdI 178 (654)
+...+|+..++.++.. +|+.....+.+.++|..+|-.+.|.+.++.|.-
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456778888888887 556678999999999999999999999887754
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=95 Score=34.87 Aligned_cols=47 Identities=34% Similarity=0.436 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhcCCCc-hhHHHHHHHHHHHcCChHHHHHHhcccCCc
Q 006245 133 MEAIMVLEFGLTVRRHA-WQYKVLLVHLYSHLGALPLAYEWYKALDVK 179 (654)
Q Consensus 133 l~AI~LLE~~L~kSp~N-fqlkLLLVrLY~lLGa~s~A~~~y~~LdIK 179 (654)
--|+++||+.+..+... -++.+|+-..|-+||-..+|...|+.+-=|
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~ 86 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK 86 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc
Confidence 35788888888655444 488999999999999999999998765433
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.56 E-value=4.6e+02 Score=31.49 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCC-cccHHHHHHhHhhCCHhHHHHHHHHHHhhccCCCccchhHHHHHHHHHHHHHHHcCcCCCchHHHH
Q 006245 2 EAVLEYFLSFGHL-ACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELE 80 (654)
Q Consensus 2 e~L~~Yf~kFg~K-pCCF~DLk~YL~~L~~ee~~~fle~l~~~v~~~ss~~~k~L~~~Ina~KL~r~lg~~~~ls~~e~~ 80 (654)
+..+++|+.-+.+ |||..|+..|-..|=--+..-=+..+.+..-+..+..... .-.+|.+..+-.+.
T Consensus 370 ~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes----------Wca~GNcfSLQkdh-- 437 (638)
T KOG1126|consen 370 DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES----------WCALGNCFSLQKDH-- 437 (638)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH----------HHHhcchhhhhhHH--
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCccCCcchHHHH------------HHHHHHHHHHhh-------cCCcHHHHHHHHHHHh
Q 006245 81 RSAVQMSEMYCKSLPLSKDLDPQESIHGEELLS------------MASNVLVQLFWR-------TSNYGYFMEAIMVLEF 141 (654)
Q Consensus 81 ~la~~l~~~Y~~sL~l~~~L~~TE~qpaDeL~L------------LAa~~Ll~l~~~-------t~d~~~Ll~AI~LLE~ 141 (654)
...++.++.+..+..+..=.-.-.|-|++. .|.-+.-+.|.. --..+-+..|-.-++.
T Consensus 438 ---~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 438 ---DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred ---HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc---cCCchH
Q 006245 142 GLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA---LDVKNI 181 (654)
Q Consensus 142 ~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~---LdIK~I 181 (654)
|+.-+|.|..+..-+-++|..+|-.+.|+..|+. ||=|++
T Consensus 515 A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 515 AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
No 57
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.48 E-value=5.8e+02 Score=32.58 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHhhhhcCC-CchhHHHHHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhh
Q 006245 117 NVLVQLFWRTSNYGYFMEAIMVLEFGLTVRR-HAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHI 190 (654)
Q Consensus 117 ~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp-~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHli 190 (654)
+.|+..|.+.++. -+|..+++....... -|...--.+|..|+..|....|.+.|+.|.-+.+.-|...|..
T Consensus 476 nsLI~~y~k~G~v---d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 476 TTLISTCAKSGKV---DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred HHHHHHHHhCcCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4455555544443 345556666554322 1344445568888888888888888888776666666555543
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=22.20 E-value=2.5e+02 Score=33.94 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+..-+|+.+++.++..+|.|..+.+.+..+|...|-.+.|..+++.+
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33458999999999999999999999999999999999999999876
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=22.07 E-value=1.7e+02 Score=24.99 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhcCCCc---hhHHHHHHHHHHHcCChHHHHHHhccc
Q 006245 130 GYFMEAIMVLEFGLTVRRHA---WQYKVLLVHLYSHLGALPLAYEWYKAL 176 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~N---fqlkLLLVrLY~lLGa~s~A~~~y~~L 176 (654)
+..-+|+..++.++...|.+ ....+.+..+|..+|-...|..+|..+
T Consensus 53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 53 GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34566888899988877775 567888899999999999999888754
No 60
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.00 E-value=2.8e+02 Score=21.68 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhcCCCchhHHHHHHHH
Q 006245 110 ELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHL 159 (654)
Q Consensus 110 eL~LLAa~~Ll~l~~~t~d~~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrL 159 (654)
+..+..+.+++. .+..-+|..+|+.++...|.|..+..++-+|
T Consensus 26 ~~~~~la~~~~~-------~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 26 EARLLLAQCYLK-------QGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHHHHHHHHHH-------TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 344455556655 3667789999999999999998888777654
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=20.57 E-value=91 Score=32.12 Aligned_cols=76 Identities=20% Similarity=0.043 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccCCchHHhhhhhhhhhhhccc-CccchhhHHHHHH
Q 006245 133 MEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLV-SSLWVESNNLLRD 209 (654)
Q Consensus 133 l~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~LdIK~IQ~DTLgHlil~Rlst-~p~~~~~~~ll~~ 209 (654)
-++..+|+......|.|+.+...+...|..||-...|+.+|+. -.|.-..|-.-+..+..+.. .|....+..+...
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~-~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK-ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH-HHHHSTT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 3455666666666688888888889999999999999999888 34555556666665555543 4555444444433
No 62
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.53 E-value=50 Score=22.12 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChHHHHHHhcccCCchHHh
Q 006245 155 LLVHLYSHLGALPLAYEWYKALDVKNILM 183 (654)
Q Consensus 155 LLVrLY~lLGa~s~A~~~y~~LdIK~IQ~ 183 (654)
-+|+-|...|....|.++|+.+.-+.+.-
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 36788999999999999998876554443
No 63
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=20.37 E-value=2.2e+02 Score=34.50 Aligned_cols=48 Identities=10% Similarity=-0.139 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcccC
Q 006245 130 GYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALD 177 (654)
Q Consensus 130 ~~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~Ld 177 (654)
+.+-+|+.+|+.++...|.|..+.+.+..+|...|-...|.+.++..-
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999998643
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=1.7e+02 Score=34.60 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHcCChHHHHHHhcc-cCCch
Q 006245 131 YFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA-LDVKN 180 (654)
Q Consensus 131 ~Ll~AI~LLE~~L~kSp~NfqlkLLLVrLY~lLGa~s~A~~~y~~-LdIK~ 180 (654)
-..+||.-.+.+|..+|.+...---+--+|+++|..+.|.++|.+ |.+|.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 345677788888888888888888888888888888888887765 55543
Done!