BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006246
         (654 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/663 (68%), Positives = 538/663 (81%), Gaps = 14/663 (2%)

Query: 6   TTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH 65
           TTT+LP+HL  ++ S  N  TS+ SQKTILD+LNTK  TS  HLKQ HAV L++GHFQDH
Sbjct: 3   TTTNLPYHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDH 62

Query: 66  YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV 125
           YVSGTLVKC+AN  FSN   ALKVF  V  PNVFV+N +++ CL++NEP + I  Y +M+
Sbjct: 63  YVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMM 122

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
              ++PNKFTYPT+FKAC+  EA +EGVQVHAHV+K GL GDVH++S+GIQMY  FG V 
Sbjct: 123 IAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVE 182

Query: 186 KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGR 245
            AR++L +   SDVIC+NA+IDGYLKCG++E AKELF S +DKN GS+N M+SG A+ G 
Sbjct: 183 GARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGM 242

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            EEAR+LFNEM +K+EI+WSA+IDGY K GYYKEALEVFN MQR++I+PRKFVLS VLAA
Sbjct: 243 IEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAA 302

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA+LGALDQG WIH +V  NS   DAVLGTALVDMYAKCGRLDMAW VFE M+ KEVFTW
Sbjct: 303 CANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTW 362

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NAMI GL MHGRA+DAIELFFKMQ++K RP+ IT   VLSACAH+GM+D GL+    M++
Sbjct: 363 NAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEE 422

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +YGI+P +EHYGC+VDLLGRAG L EAEEV+ SMPMEP+AAVW ALLGACRKHG+VE GE
Sbjct: 423 VYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGE 482

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           R+GKILLE+EPQN               R DDVA +RKLMKERG+KT+ G SMID +GV+
Sbjct: 483 RVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVV 542

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           HEF+ GDGSHPQ+K IYLMLK +I++LKMEG+SPN+SQVLFDI+EEEKE   +YHSEKLA
Sbjct: 543 HEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLA 602

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAFG INT PG TI V+KNLR+CEDCHSA KLIS+V+ R+IIVRDR RYHHF+ G CSC 
Sbjct: 603 IAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCK 662

Query: 652 DFW 654
           DFW
Sbjct: 663 DFW 665


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/667 (61%), Positives = 534/667 (80%), Gaps = 17/667 (2%)

Query: 3   TKVTTTDLPHHLKPEEISA-TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH 61
           + ++T+ LP   KP + SA  NIPTS+  QKT+L + ++K  TS Q+L Q HA++L+SGH
Sbjct: 2   SSISTSHLPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGH 61

Query: 62  FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLY 121
           FQDHYVSG L+KC+AN  FSNF+ ALKVF+S+  PNVF+WN V++ CLE+N+ ++ I  Y
Sbjct: 62  FQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 122 SEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
             MV +D++PNKFTYPT+FKACS+ +A +EG Q+H HVVK+G+  DVH+KS+GIQMYA F
Sbjct: 122 GRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASF 180

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G +  AR++   G +SDV+CWN +IDGYLKCG +E AK LF     KN GS+N MI+G A
Sbjct: 181 GRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G   +ARKLF+EM+++DEI+WS+++DGY   G YKEALE+F +MQR++ +P +F+LS 
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           VLAAC+++GA+DQG W+H ++KRNSI +DAVLGTAL+DMYAKCGRLDM W+VFE+MK +E
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +FTWNAMIGGLA+HGRA+DA+ELF K+Q  +M+P+ IT   VL+ACAHAG +D+GL+   
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M++ YG+DPE+EHYGC+VDLLGR+G  +EAE++I+SMPM+PNAAVW ALLGACR HG  
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  ER+GKILLE+EPQN               R DDV+K+RKLMK RGIKT PG S++D+
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDL 539

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           NG +HEF+ GDGSHPQ+KEIY  LK I E+L+M G+SP++SQVLFDIDEEEKETA  YHS
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG INT PG  I ++KNLRVC+DCHSATKLIS++F R+IIVRDRVRYHHF+NG 
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGT 659

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 660 CSCKDFW 666


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/667 (61%), Positives = 533/667 (79%), Gaps = 17/667 (2%)

Query: 3   TKVTTTDLPHHLKPEEISA-TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH 61
           + ++T+ LP   KP + SA  NIPTS+  QKT+L + ++K  TS Q+L Q H ++L+SGH
Sbjct: 2   SSISTSHLPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGH 61

Query: 62  FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLY 121
           FQDHYVSG L+KC+AN  FSNF+ ALKVF+S+  PNVF+WN V++ CLE+N+ ++ I  Y
Sbjct: 62  FQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY 121

Query: 122 SEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
             MV +D++PNKFTYPT+FKACS+ +A +EG Q+H HVVK+G+  DVH+KS+GI MYA F
Sbjct: 122 GRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASF 180

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G +  AR++   G +SDV+CWN +IDGYLKCG +E AK LF     KN GS+N MI+G A
Sbjct: 181 GRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G   +ARKLF+EM+++DEI+WS+++DGY   G YKEALE+F +MQR++ +P +F+LS 
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           VLAAC+++GA+DQG W+H ++KRNSI +DAVLGTAL+DMYAKCGRLDM W+VFE+MK +E
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +FTWNAMIGGLA+HGRA+DA+ELF K+Q  +M+P+ IT   VL+ACAHAG +D+GL+   
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M++ YG+DPE+EHYGC+VDLLGR+G  +EAE++I+SMPM+PNAAVW ALLGACR HG  
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  ER+GKILLE+EPQN               R DDV+K+RKLMK+RGIKT PG S++D+
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDL 539

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           NG +HEF+ GDGSHPQ+KEIY  LK I E+L+M G+SP++SQVLFDIDEEEKETA  YHS
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG INT PG  I ++KNLRVC+DCHSATKLIS++F R+IIVRDRVRYHHF+NG 
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGT 659

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 660 CSCKDFW 666


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/677 (61%), Positives = 527/677 (77%), Gaps = 30/677 (4%)

Query: 2   STKVTTTDLP----HHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVIL 57
           ST  T T+ P    HHL P+     +  TS+ S K IL +LNT+C TS  HLKQAHA+IL
Sbjct: 3   STATTATEAPYHHHHHLIPK---GHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALIL 59

Query: 58  KSGHFQDHYVSGTLVKCHAN---SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           ++GH QD Y++G+LVK +AN   +R+ +FE +L+VF+ V KPNVF+WN +++ C+E+NEP
Sbjct: 60  RTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEP 119

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
           ++ I LY EMV   S+PNK+TYP V KACS +    EGVQVHAH+VK+GL GD H+ SS 
Sbjct: 120 FKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSA 179

Query: 175 IQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-TGS 232
           I+MYA FG + +AR+ILDD G + D +CWNA+IDGYL+ G++E A+ELF+   D++   +
Sbjct: 180 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIST 239

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           +NAMISGF+R G  E AR+ F+EM ++DEI+WSA+IDGY ++G + EALE+F++MQ++KI
Sbjct: 240 WNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKI 299

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +PRKFVL  VL+ACA+LGALDQG WIH + KRNSI +D VLGT+LVDMYAKCGR+D+AW+
Sbjct: 300 RPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE 359

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VFE M  KEV +WNAMIGGLAMHGRA+DAI+LF KM    + P+ ITF  VL+ACAH G+
Sbjct: 360 VFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGL 416

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           + +GL     M++ YG++P++EHYGCIVDLLGRAG L EAE+V+SS+P EP  AVW ALL
Sbjct: 417 VQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALL 476

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
           GACRKHG VE GER+GKILLE+EPQN               R ++V ++RKLMKERGIKT
Sbjct: 477 GACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKT 536

Query: 519 NPGSSMIDVN-GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
            PG+S+ID+  G +H+F  GDGSHPQVK+IY ML K+ E+L+MEGY P+ SQVLFDIDEE
Sbjct: 537 TPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEE 596

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           EKETA   HSEKLAI FG INT PG TIR++KNLRVCEDCHSATKLIS+V+ R+IIVRDR
Sbjct: 597 EKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDR 656

Query: 638 VRYHHFRNGKCSCNDFW 654
           +RYHHFRNG CSC DFW
Sbjct: 657 IRYHHFRNGACSCKDFW 673


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/676 (60%), Positives = 525/676 (77%), Gaps = 29/676 (4%)

Query: 2   STKVTTTDLP---HHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILK 58
           ST  T T+ P   HHL P   +  +  TS+ S K IL +LNT+C TS  HLKQAHA+IL+
Sbjct: 3   STATTATEAPYHHHHLIP---NGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILR 59

Query: 59  SGHFQDHYVSGTLVKCHAN---SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           +GH QD Y++G+LVK +AN   +R+ +FE +L+VF+ V KPNVF+WN +++ C+E+NEP+
Sbjct: 60  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 119

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + I LY EM+    +PNK+TYP V KACS      EGVQVHAH+VK+GL GD H+ SS I
Sbjct: 120 KAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAI 179

Query: 176 QMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-TGSY 233
           +MYA FG + +AR+ILDD G + D +CWNA+IDGYL+ G++E A+ELF+   D++   ++
Sbjct: 180 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTW 239

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NAMISGF+R G  E AR+ F+EM ++DEI+WSA+IDGY ++G + EALE+F++MQ++KI+
Sbjct: 240 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 299

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           PRKFVL  VL+ACA+LGALDQG WIH + KRNSI +D VLGT+LVDMYAKCGR+D+AW+V
Sbjct: 300 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 359

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           FE M  KEV +WNAMIGGLAMHGRA+DAI+LF KM    + P+ ITF  VL+ACAH G++
Sbjct: 360 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLV 416

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +GL     M++ YG++P++EHYGCIVDLLGRAG L EAE+V+SS+P EP  AVW ALLG
Sbjct: 417 QKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLG 476

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           ACRKHG VE GER+GKILLE+EPQN               R ++V ++RKLMKERGIKT 
Sbjct: 477 ACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTT 536

Query: 520 PGSSMIDVN-GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
           PG+S+ID+  G +H+F  GDGSHPQVK+IY ML K+ E+L+MEGY P+ SQVLFDIDEEE
Sbjct: 537 PGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEE 596

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KETA   HSEKLAI FG INT PG TIR++KNLRVCEDCHSATKLIS+V+ R+IIVRDR+
Sbjct: 597 KETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRI 656

Query: 639 RYHHFRNGKCSCNDFW 654
           RYHHFRNG CSC DFW
Sbjct: 657 RYHHFRNGACSCKDFW 672


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/674 (53%), Positives = 461/674 (68%), Gaps = 94/674 (13%)

Query: 2   STKVTTTDLP---HHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILK 58
           ST  T T+ P   HHL P   +  +  TS+ S K IL +LNT+C TS  HLKQAHA+IL+
Sbjct: 24  STATTATEAPYHHHHLIP---NGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILR 80

Query: 59  SGHFQDHYVSGTLVKCHAN---SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           +GH QD Y++G+LVK +AN   +R+ +FE +L+VF+ V KPNVF+WN +++ C+E+NEP+
Sbjct: 81  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 140

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + I LY EM+    +PNK+TYP V KACS                      D  V + G+
Sbjct: 141 KAILLYYEMMVAHFRPNKYTYPAVLKACS----------------------DAGVVAEGV 178

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
           Q++A          ++  G   D         G++                       ++
Sbjct: 179 QVHA---------HLVKHGLGGD---------GHI----------------------LSS 198

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
            I  +A FGR  EAR++ ++     E+    + D   + G + EALE+F++MQ++KI+PR
Sbjct: 199 AIRMYASFGRLVEARRILDDKGG--EVDAVCMPD---RKGCFMEALEIFHQMQKEKIRPR 253

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           KFVL  VL+ACA+LGALDQG WIH + KRNSI +D VLGT+LVDMYAKCGR+D+AW+VFE
Sbjct: 254 KFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFE 313

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M  KEV +WNAMIGGLAMHGRA+DAI+LF KM    + P+ ITF  VL+ACAH G++ +
Sbjct: 314 KMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQK 370

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           GL     M++ YG++P++EHYGCIVDLLGRAG L EAE+V+SS+P EP  AVW ALLGAC
Sbjct: 371 GLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC 430

Query: 476 RKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPG 521
           RKHG VE GER+GKILLE+EPQN               R ++V ++RKLMKERGIKT PG
Sbjct: 431 RKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG 490

Query: 522 SSMIDVN-GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           +S+ID+  G +H+F  GDGSHPQVK+IY ML K+ E+L+MEGY P+ SQVLFDIDEEEKE
Sbjct: 491 TSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKE 550

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
           TA   HSEKLAI FG INT PG TIR++KNLRVCEDCHSATKLIS+V+ R+IIVRDR+RY
Sbjct: 551 TAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRY 610

Query: 641 HHFRNGKCSCNDFW 654
           HHFRNG CSC DFW
Sbjct: 611 HHFRNGACSCKDFW 624


>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 422

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/425 (63%), Positives = 344/425 (80%), Gaps = 4/425 (0%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           M T  TTT LP+HL P E    N PTS+ +QKTILD+LN+KC+ S+Q+LKQ HAVIL+SG
Sbjct: 1   MHTATTTTHLPYHLSPAE----NKPTSKLTQKTILDLLNSKCNASFQYLKQIHAVILRSG 56

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
           HF+DHYVSGTL+KC+AN  F N +LA  VF+ V KPNVFV+N +++ACL+++EP++ I  
Sbjct: 57  HFEDHYVSGTLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICF 116

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y +MV  +++PNKFTYP++ KAC +  A KEGVQ+H HV+K GL GDVH++S+GIQMYA 
Sbjct: 117 YYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYAT 176

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G +  AR++LD+  +SDVIC+NA+IDGY K GD++ AKELF+  +D++ GS+N M+SG 
Sbjct: 177 LGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGL 236

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
           A+ G  +EAR+LFN+M +KDEI+WS++IDGY K G YKEALEVFN MQ +KI+P+KFVLS
Sbjct: 237 AKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLS 296

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            VLAACA+LGALDQG WIH +VK+N + +DAVLGTALVDMYAKCGRLDMAW VFE MK K
Sbjct: 297 SVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEK 356

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           EVFTWNAMI GLAMHGRA+DAI+LF KMQ+EK+R + ITF  +L+ACAH GM+D GL  L
Sbjct: 357 EVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLLNACAHKGMVDEGLNIL 416

Query: 421 TYMQQ 425
             M++
Sbjct: 417 DSMEK 421


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/624 (43%), Positives = 400/624 (64%), Gaps = 28/624 (4%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  HLKQ H+  +K+G   +  +   ++    +  F +   A ++F+++ +P+VF WN +
Sbjct: 26  SMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIM 85

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            +       P   +SLY EM+  + KP+ +TYP +FK  + + A + G ++H HVVK GL
Sbjct: 86  FKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGL 145

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +V   ++ I MY+  G ++ AR I D   KSDV+ WNA+I GY +             
Sbjct: 146 DSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI------------ 193

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              K+  S+ A+++GF   G+ + ARK F++M ++D ++W+A+IDGY +   YKEAL +F
Sbjct: 194 --KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLF 251

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            EMQ  KIKP +F +  VL ACA LGAL+ G WI  ++ +N +  D  +G AL+DMY KC
Sbjct: 252 REMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKC 311

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G ++MA  +F  +  ++ FTW AM+ GLA++G  ++A+ +F +M +  + PD +T+  VL
Sbjct: 312 GNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVL 371

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC H GM+D G +    M   +GI+P + HYGC+VDLLG+AG+L EA E+I +MPM+PN
Sbjct: 372 SACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPN 431

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           + VW ALLGACR H + E  ER  + +LE+EP N               + D + ++R++
Sbjct: 432 SIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQV 491

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M +RGIK  PG S+I++NG++HEF  GD SHPQ KEIY  L K+   LK+ GYSPN+S+V
Sbjct: 492 MMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEV 551

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
             DI EE+KE A   HSEKLAIAFG IN+ PG TIR++KNLR+C DCH   KL+SKV+ R
Sbjct: 552 FLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDR 611

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           ++IVRDR R+HHFR+G CSC D+W
Sbjct: 612 EVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/720 (39%), Positives = 422/720 (58%), Gaps = 86/720 (11%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + +++ P     +   L +L +KC  S +  KQ HA I+K+G     +    L++  A S
Sbjct: 17  LPSSDPPYRVLQEHPSLKLL-SKCQ-SIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVS 74

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  +   A+ +FNS+ +PN+F+WNS++R       P   +  +  M+    +PN +T+P 
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA------------------- 179
           + K+C+   +  EG Q+HAHV+K G   DV + +S I MYA                   
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 180 ------------CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                        +G +++ARQ+ D+    DV+ WNA+I GY + G  + A  LF+  + 
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 228 KNTGS---------------------------------------YNAMISGFARFGRFEE 248
            N                                           NA+I  +++ G  + 
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR+LF++M ++D I+W+ +I GYT    YKEAL +F EM    ++P +     +L +CA 
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGA+D G WIH ++ +N   V   L T+L+D+YAKCG +  A +VF+ MK+K + +WNAM
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GLAMHG+AD A ELF KM  + + P+ ITF  +LSAC HAG++D G Q  + M Q Y 
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYK 494

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P+ +HYGC++DLLGRAG   EAE ++ +M ++P+ A+W +LLGACR HG VE GE + 
Sbjct: 495 ISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVA 554

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E+EP N               + DDVA++R  + +RG+K  PG + I+V+ V+HEF
Sbjct: 555 ERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEF 614

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HPQ ++IY ML+++ E+LK+ G+  ++S+VL+D+DEE KE A  +HSEKLAIAF
Sbjct: 615 LVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAF 674

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG  IR+IKNLRVC +CHSATKLISK+F R+II RDR R+HHF++G CSCND+W
Sbjct: 675 GLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 138/309 (44%), Gaps = 18/309 (5%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA-HAVILKSGHFQDHYVSGTLVKCH 75
           E++   N+P +E    TI+ +L+    ++   L  +  + I   G   +  +   L+  +
Sbjct: 250 EDMRKANVPPNE---STIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMY 306

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
             S+  + + A ++F+ + + +V  WN ++            ++L+ EM+    +P + T
Sbjct: 307 --SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEIT 364

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           + ++  +C+   A   G  +HA++ KN       + +S I +YA  G +  ARQ+ D   
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARK 251
              +  WNA+I G    G  + A ELF        + N  ++  ++S     G  +  ++
Sbjct: 425 IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQ 484

Query: 252 LFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            F+ M    +I+     +  +ID   + G ++EA  +   M+   +KP   +   +L AC
Sbjct: 485 FFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNME---VKPDGAIWGSLLGAC 541

Query: 307 ASLGALDQG 315
              G ++ G
Sbjct: 542 RDHGRVELG 550


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 290/727 (39%), Positives = 419/727 (57%), Gaps = 91/727 (12%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           H +P     ++ P         L +L+T C  S+Q+LKQ H+ I+K+G     +    L+
Sbjct: 18  HFQP----TSDPPYKLLQNHPSLTLLST-C-KSFQNLKQIHSQIIKTGLHNTQFALSKLI 71

Query: 73  KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
           +  A S F N   AL +F S+ +PN F+WN+++R     + P   I  Y  M+    +PN
Sbjct: 72  EFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPN 131

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA------------- 179
            +T+P + K+C+   A +EG Q+H HV+K GL  D  V +S I MYA             
Sbjct: 132 SYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFS 191

Query: 180 ------------------CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
                               GC++ AR++ ++    D + WNA+I GY + G  E A   
Sbjct: 192 KSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAF 251

Query: 222 FKSTKDKN-----------------TGSY----------------------NAMISGFAR 242
           F+  K  N                 +GS                       NA+I  +++
Sbjct: 252 FQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSK 311

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  ++AR LF  + +KD I+W+ +I GY+    YKEAL +F +MQ+  ++P       +
Sbjct: 312 CGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSI 371

Query: 303 LAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           L ACA LGALD G WIH ++ +  +   +  L T+L+DMYAKCG ++ A +VF  MK K 
Sbjct: 372 LPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKS 431

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           + +WNAMI GLAMHG A+ A+ELF +M+ E   PD ITF  VLSAC+HAG+++ G Q  +
Sbjct: 432 LGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFS 491

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M + Y I P+++HYGC++DLLGRAG   EAE ++ +M M+P+ A+W +LLGACR HG V
Sbjct: 492 SMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNV 551

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           E GE   K L E+EP+N               R DDVA++R  + ++G+K  PG S I+V
Sbjct: 552 ELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEV 611

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           + V+HEF  GD  H Q ++IY ML +I + L+  G+ P++S+VL+D+DEE KE +  +HS
Sbjct: 612 DSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHS 671

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG I+T P  TIR++KNLRVC +CHSA KLISK+F R+II RDR R+HHF++G 
Sbjct: 672 EKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGS 731

Query: 648 CSCNDFW 654
           CSC D+W
Sbjct: 732 CSCMDYW 738


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/665 (41%), Positives = 402/665 (60%), Gaps = 47/665 (7%)

Query: 5   VTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQD 64
           V+   LP     +  +   IPT +   K  +    + C T  + L Q HA  + +G F D
Sbjct: 8   VSPLSLPSQSNLQNQNPPWIPTPQLLCKYPILRHLSSCKT-LKDLTQIHAQTITTGIFSD 66

Query: 65  HYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM 124
           ++V+  ++   A S   +   A  +F  + KP++F+ N+++RA      P   +  YSEM
Sbjct: 67  NFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEM 126

Query: 125 VGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
                  P+  T+P + KACS   + + G  +H+HV K G   +V V +  +QMYA    
Sbjct: 127 TESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYA---- 182

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                                       CG IE A  +F  T + +  S+N MI G+ + 
Sbjct: 183 ---------------------------SCGLIESAGLVFDRTPECDGASWNIMIGGYLKC 215

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F+ AR++F  M D+D ++WS +I+GY ++  +KE L +F +M  +KI+P + VL   L
Sbjct: 216 GVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNAL 275

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           +ACA LGA++QG WI  +++R ++ +   LGTAL+DMY+KCG ++ A +VF  MK K V 
Sbjct: 276 SACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVL 335

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            W+AMI GLA++G+  DA+ LF +M+ + ++P+ +TF  +L+AC+H+ ++D G      M
Sbjct: 336 AWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSM 395

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
             +YG+ P   H+ C+VDL GRAG L +A+ VI SMP +PN+A+W ALL ACR HG+ E 
Sbjct: 396 TSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTEL 455

Query: 484 GERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GE++GK LLE++P +               R D VA++R++M+ER +   PG S ID+  
Sbjct: 456 GEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGD 515

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
            IHEF  GD SHPQ++ IY  L ++ ++LK  GY P++ QVL D+DEEEKETA  +HSEK
Sbjct: 516 TIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEK 575

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG I TDPG TIR+ KNLRVC DCHSATKLISK++ R+IIVRDR R+HHFR+G CS
Sbjct: 576 LAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCS 635

Query: 650 CNDFW 654
           C DFW
Sbjct: 636 CMDFW 640


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 275/639 (43%), Positives = 400/639 (62%), Gaps = 18/639 (2%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVF 90
           K ++ +L     T    + Q HA+I+K+    +++V   L++   A S  ++   A  VF
Sbjct: 4   KKVMSLLQNA--TKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEAD 149
           + +  P+ F+WN+++RA L    P   +SL+ +M   +  P + ++   V +AC   +  
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDP 121

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G ++H  V+K GL  D+ V+++ I+MYA FG +  AR ILD+ +  D++ +N L+  Y
Sbjct: 122 GNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEY 181

Query: 210 LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
           ++ G+I  A +LF    +++  S+N MI G A  G    A+KLF+   ++D I+WS++I 
Sbjct: 182 VRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIA 241

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
            Y K     EAL +F+EMQ   + P K  +  VL+AC  +GAL  G  IH+ ++RN I +
Sbjct: 242 AYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEI 301

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  LGT+LVDMYAKCG +D + +VF  M  ++VF W+AMI GLA HG  + A++ F KM 
Sbjct: 302 DLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMI 361

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            E ++P+ +TF  VLSAC+H G++D G    T M ++Y + P++EHYGC+VD+LGRAG L
Sbjct: 362 SEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRL 421

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------------- 496
            EA E+I SMP  P+A VW ALLGACR +  VE  E     LLE+EP             
Sbjct: 422 QEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIY 481

Query: 497 -QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
            Q +  D V  +R++MK   I+  PGSS I+V+  +HEF  GD SHP+ K+I  ML +I 
Sbjct: 482 SQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEIT 541

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            +LK  GY+P ++ VL D DE+EKE A  +HSEKLAIAFG ++T PG+TIR++KNLRVC+
Sbjct: 542 ARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCD 601

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCH A KLIS+ +KR IIVRDR R+HHF NG CSC D+W
Sbjct: 602 DCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/645 (43%), Positives = 406/645 (62%), Gaps = 43/645 (6%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+S F  KT+            Q LKQ HA ++K+   +D   +  L++  A S   + +
Sbjct: 15  PSSFFPCKTM------------QDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLD 62

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKAC 143
            A K+F S+H+PN F +N+++RA  E N+P   + ++ EMV     +PN FT+P+VFKAC
Sbjct: 63  YARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKAC 122

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
              E  +EG QVH   VK GL  D  V S+ ++MY   G +  A ++             
Sbjct: 123 GRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYR---------R 173

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
             +DG   C  I   K       D +   +N MI G+ R G  E AR LF+EM  +  ++
Sbjct: 174 VFVDG---CDGIRDKKRRV----DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVS 226

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+ +I GY + G++KEA+EVF EMQ  ++ P    L  VL A + LGAL+ G W+H +  
Sbjct: 227 WNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAV 286

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           RN+I VD VLG+AL+DMYAKCG ++ A +VFE +  + V TW+ +I GLAMHGRA D ++
Sbjct: 287 RNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLD 346

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
            F  M+R  + P  +T+  +LSAC+HAG+++ G     +M ++ G++P +EHYGC+VDLL
Sbjct: 347 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 406

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---- 499
           GRAG L E+EE+I +MP++P+  +W+ALLGAC+ HG VE G+R+ + L+E+ P +     
Sbjct: 407 GRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV 466

Query: 500 ----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                       + VAK+R +MKE  ++ +PG S I+++GVIHEF   D SHP+ K+I+ 
Sbjct: 467 ALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHS 526

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
           ML+++   L + GY PN++QVL ++DEE+KE++  YHSEK+AIAFG I+T P   +R+ K
Sbjct: 527 MLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITK 586

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           NLR+CEDCHS+ KLISK++KR IIVRDR R+HHF NG CSC D+W
Sbjct: 587 NLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/667 (41%), Positives = 392/667 (58%), Gaps = 57/667 (8%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC T+   LKQ HA +L++  F D + +  +V   A     +   A  VFN +  P  F 
Sbjct: 49  KC-TTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFT 107

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
            NS++R     N P + I  Y  M+     P++FT+P++FK+C +     EG Q+H H  
Sbjct: 108 CNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVL---CEGKQLHCHST 164

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--------- 211
           K G   D +++++ + MY+  GC+  AR++ D      V+ W  +I  Y +         
Sbjct: 165 KLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIK 224

Query: 212 -----------------------CG---DIEGAKELFKSTKDKNTGSYNAMISG----FA 241
                                  C    D+E AK++ K   +   G +  + S     + 
Sbjct: 225 LFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYC 284

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G +  AR LFN+M +K+   W+ +I+G+ +D  Y+EAL +FNEMQ   +K  K  ++ 
Sbjct: 285 KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMAS 344

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L AC  LGAL+ G W+H ++++  I VD  LGTALVDMYAKCG ++ A +VF++M  K+
Sbjct: 345 LLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 404

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           V TW A+I GLAM G+   A+ELF +MQ  +++PD ITF  VL+AC+HAG+++ G+    
Sbjct: 405 VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFN 464

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M   YGI P +EHYGC+VD+LGRAG +AEAE++I +MPM P+  V   LL ACR HG +
Sbjct: 465 SMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNL 524

Query: 482 EFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDV 527
              ER  + L+E++P+N              +  +   KMR+LM ER IK  PG S I+V
Sbjct: 525 VVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 584

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
            GV+HEF  GD SHPQ  EIY  L  ++ +LK  GY P+ S+VLFD+DE+EKE     HS
Sbjct: 585 GGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHS 644

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG ++T PG  IRV+KNLRVC DCHSA K IS+V+ R+IIVRDR R+HHF  G 
Sbjct: 645 EKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGS 704

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 705 CSCRDFW 711



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 143/325 (44%), Gaps = 38/325 (11%)

Query: 9   DLPHH------------LKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVI 56
           DLPH             +KP EI+  N+ T+    + +            +  KQ H  I
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDL------------ETAKQVHKYI 264

Query: 57  LKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR 116
            ++G      ++  L+  +   +   + LA  +FN + + N+F WN ++   +E ++   
Sbjct: 265 DETGIGFHTVLTSALMDVYC--KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEE 322

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
            +SL++EM     K +K T  ++  AC+   A + G  +H ++ K  +  DV + ++ + 
Sbjct: 323 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 382

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKDKNTGS 232
           MYA  G +  A ++  +  + DV+ W ALI G   CG    A ELF     S    +  +
Sbjct: 383 MYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAIT 442

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEM 287
           +  +++  +  G   E    FN M +K  I      +  ++D   + G   EA ++   M
Sbjct: 443 FVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 502

Query: 288 QRDKIKPRKFVLSCVLAACASLGAL 312
               + P  FVL  +L+AC   G L
Sbjct: 503 ---PMAPDYFVLVGLLSACRIHGNL 524


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/625 (42%), Positives = 392/625 (62%), Gaps = 45/625 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           ++   LKQ H+ I++ G   D+   G ++K  A S+  +   AL+VF+ +  P+ +++N+
Sbjct: 31  STMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNT 90

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + R  L        I +YS M+     PNKFTYP + +AC I  A +EG Q+HAHV+K G
Sbjct: 91  IFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFG 150

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                            FG              +D    N LI  Y+    +E A+ +F 
Sbjct: 151 -----------------FG--------------ADGFSLNNLIHMYVNFQSLEQARRVFD 179

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
           +   ++  S+ ++I+G++++G  ++AR++F  M +++ ++W+A+I  Y +     EA  +
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F+ M+ + +   KFV + +L+AC  LGAL+QG WIH +++++ I +D+ L T ++DMY K
Sbjct: 240 FDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 299

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG L+ A +VF ++  K + +WN MIGGLAMHG+ + AIELF +M+RE + PD ITF  V
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LSACAH+G+++ G     YM ++ G+ P +EH+GC+VDLLGRAG L EA ++I+ MP+ P
Sbjct: 360 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 419

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRK 509
           +A V  AL+GACR HG  E GE++GK ++E+EP N               R +DVAK+RK
Sbjct: 420 DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRK 479

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LM +RG+K  PG SMI+    + EF  G  +HPQ KEIY  L +I+E ++  GY P++  
Sbjct: 480 LMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDG 539

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL DIDEEEKE    YHSEKLAIAFG + T PG T+R+ KNLR+C DCH A+KLISKV+ 
Sbjct: 540 VLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYD 599

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+II+RDR R+HHFR G CSC D+W
Sbjct: 600 REIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/704 (39%), Positives = 397/704 (56%), Gaps = 88/704 (12%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L + C T  Q LKQ H+ I+K+G    H+    L++  A S   +   AL +F ++  PN
Sbjct: 34  LLSNCKT-LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPN 92

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
             +WN ++R       P+  +  Y  M+   ++PN++T+P++FK+C+      EG QVHA
Sbjct: 93  HVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHA 152

Query: 158 HVVKNGLCGDVHVKSSGIQMYA-------------------------------CFGCVNK 186
           HV+K GL  +  V +S I MYA                                 G +++
Sbjct: 153 HVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDE 212

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-------------------- 226
           AR++ D+    DV+ WNA+I GY + G +E A   F+  +                    
Sbjct: 213 ARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQ 272

Query: 227 ----------------DKNTGS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
                           D+  GS     N +I  + + G  EEA  LF ++ DK+ ++W+ 
Sbjct: 273 SGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNV 332

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN- 325
           +I GYT    YKEAL +F  M +  I P       +L ACA+LGALD G W+H +V +N 
Sbjct: 333 MIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNM 392

Query: 326 -SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
            S+     L T+L+DMYAKCG L +A ++F+ M  K + TWNAMI G AMHG  D A+ L
Sbjct: 393 KSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGL 452

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M  E   PD ITF  VL+AC HAG++  G +  + M Q Y + P++ HYGC++DL G
Sbjct: 453 FSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFG 512

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           RAG   EAE ++ +M M+P+ A+W +LLGACR H  +E  E + K L E+EP+N      
Sbjct: 513 RAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVL 572

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
                    R +DVAK+R  + +  +K  PG S I+V+ V+HEF  GD  HPQ  EIY M
Sbjct: 573 LSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKM 632

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           L +I  +L+  G+ P++S+VL+D+DEE KE    +HSEKLAIAFG I+T PG TIR++KN
Sbjct: 633 LDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKN 692

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LRVC +CHSATKLISK+F R+II RDR R+HHF++G CSC D+W
Sbjct: 693 LRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/746 (38%), Positives = 422/746 (56%), Gaps = 94/746 (12%)

Query: 1   MSTKVTTTDLPHHL---KPEE---ISATNIPTSEFSQKT--ILDILNTKCHTSWQHLKQA 52
           M   V    L HH    KP++   I+AT+     FS  T  ++ +L T C  S   L+Q 
Sbjct: 1   MPVPVRFRTLLHHRHVKKPKQMTTIAATSSALKSFSPPTHPLISLLET-CE-SMDQLQQV 58

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   +K G   +  +   ++       + +F+ A ++F+ + +PN+F+WN+++R     +
Sbjct: 59  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 118

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   +SLY EM+    KP+++T+P +FK  +   A + G Q+H HV+K+GL  +V V +
Sbjct: 119 FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 178

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN--- 229
           + +QMY   G ++ AR + D   K+DVI WN +I  Y K G  E ++ LF   +DK    
Sbjct: 179 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 238

Query: 230 -------------------TG----SY-------------NAMISGFARFGRFEE----- 248
                              TG    SY             NAMI  +A  G  +      
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 298

Query: 249 --------------------------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                     AR  F++M +KD ++W+A+IDGY +   +KEALE
Sbjct: 299 RSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALE 358

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F  MQ   +KP +F +  VL ACA LGAL+ G WI  ++ RN I  D  +  AL+DMY 
Sbjct: 359 LFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYF 418

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG +D A  +F +M  ++ FTW AMI GLA++G  + A+++F  M +  + PD IT+  
Sbjct: 419 KCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIG 478

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC H G++D+G +    M   +GI+P + HYGC+VDLL RAG L EA EVI +MP++
Sbjct: 479 VLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIK 538

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMR 508
            N+ VW ALL  CR + E +  E + K +LE+EP N              +R +D+ ++R
Sbjct: 539 ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELR 598

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           ++M ++GIK  PG S+I++NG +HEF  GD SHPQ K I   L K+ + LK+ GYSP+ S
Sbjct: 599 QMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDIS 658

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
           +V  DI EE+KE +   HSEKLAIAFG IN+ PG TIR+ KNLR+C DCH+  KL+SKV+
Sbjct: 659 EVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVY 718

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R++IVRDR R+HHF++G CSC D+W
Sbjct: 719 NREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/722 (38%), Positives = 413/722 (57%), Gaps = 88/722 (12%)

Query: 19  ISATNIPTSEFSQKT--ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           I+AT+     FS  T  ++ +L T C  S   L+Q H   +K G   +  +   ++    
Sbjct: 4   IAATSSALKSFSPPTHPLISLLET-CE-SMDQLQQVHCQAIKKGLNANPVLQNRVMTFCC 61

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
              + +F+ A ++F+ + +PN+F+WN+++R     + P   +SLY EM+    KP+++T+
Sbjct: 62  THEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 121

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           P +FK  +   A + G Q+H HV+K+GL  +V V ++ +QMY   G ++ AR + D   K
Sbjct: 122 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKN----------------------TG--- 231
           +DVI WN +I  Y K G  E ++ LF   +DK                       TG   
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 241

Query: 232 -SY-------------NAMISGFARFGRFEE----------------------------- 248
            SY             NAMI  +A  G  +                              
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 301

Query: 249 --ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             AR  F++M +KD ++W+A+IDGY +   +KEALE+F  MQ   +KP +F +  VL AC
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A LGAL+ G WI  ++ RN I  D  +  AL+DMY KCG +D A  +F +M  ++ FTW 
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI GLA++G  + A+++F  M +  + PD IT+  VLSAC H G++D+G +    M   
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           +GI+P + HYGC+VDLL RAG L EA EVI +MP++ N+ VW ALL  CR + E +  E 
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 541

Query: 487 LGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + K +LE+EP N              +R +D+ ++R++M ++GIK  PG S+I++NG +H
Sbjct: 542 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH 601

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EF  GD SHPQ K I   L K+ + LK+ GYSP+ S+V  DI EE+KE +   HSEKLAI
Sbjct: 602 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 661

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG IN+ PG TIR+ KNLR+C DCH+  KL+SKV+ R++IVRDR R+HHF++G CSC D
Sbjct: 662 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 721

Query: 653 FW 654
           +W
Sbjct: 722 YW 723


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 282/679 (41%), Positives = 405/679 (59%), Gaps = 51/679 (7%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           N  T+  S   IL + N  C T  +HLKQ HA I+   H    +    L    A S F  
Sbjct: 88  NPLTNPPSNPQILSLFN-PCKT-LRHLKQVHAQIIT--HHNSPFQLSALASLSALSPFPT 143

Query: 83  F-ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           F   A  +F+ +  P   ++NS++RA      P   + LY  M+    KP+  TYP V K
Sbjct: 144 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 203

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+ +     G+ VH HVVK+G   D ++ SS I +YA    +  A+Q+ +  S  DV+ 
Sbjct: 204 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 263

Query: 202 WNALIDGYLK-------------------------------CGDIEGAKELFKSTKDKNT 230
           WNA+IDGY+K                                G I+ AK LF    ++N 
Sbjct: 264 WNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL 323

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S+N+M++GF + G  E+A  LF+EM  +D ++W++++  Y + G   EAL +F++M+  
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            +KP +  +  +L+ACA LGALD+G+ +H ++  N I V++++GTALVDMYAKCG++ +A
Sbjct: 384 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 443

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            +VF  M+ K+V  WN +I G+A+HG   +A +LF +M+   + P+ ITF  +LSAC+HA
Sbjct: 444 TQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 503

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           GM+D G + L  M   YGI+P+VEHYGC++DLL RAG+L EA E+I +MPMEPN +   A
Sbjct: 504 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA 563

Query: 471 LLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGI 516
           LLG CR HG  E GE +GK L+ ++P                ++ DD  K+R LMK  GI
Sbjct: 564 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 623

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDID 575
              PG S+I++ G++H F  GD SHP+  +IY  L +I  +LK   GYS ++  VL D++
Sbjct: 624 SKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDME 683

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           EE+KE A   HSEKLAIA+G ++ D    IR++KNLRVC DCH   KLISKV+ R+IIVR
Sbjct: 684 EEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVR 743

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           DR R+HHF +G+CSC DFW
Sbjct: 744 DRNRFHHFEDGECSCLDFW 762


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/648 (41%), Positives = 400/648 (61%), Gaps = 51/648 (7%)

Query: 25  PTSEFSQKT----ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           PTS+ S ++     L +L  +C ++ + L+Q H  +LK+G   D   +  L+   A+   
Sbjct: 8   PTSQLSSESNAAQTLHLLQ-RC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS 65

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            +   A  VF+ + +PN F+WN+++R      EP   + LY  M+      N +T+P + 
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           KACS   A +E  Q+HAH++K G                 FG              S++ 
Sbjct: 126 KACSSMSASEETQQIHAHIIKMG-----------------FG--------------SEIY 154

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             N+L++ Y K GDI+ A+ LF     ++T S+N+MI G+ + G  E A ++FN M +++
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERN 214

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            I+W+++I G    G  KEAL +F+ MQ   IK     L   L ACA LG LDQG WIH 
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           ++K++ I +D +LG  L+DMYAKCG L+ A +VF  M+ K V  W AMI G A+HGR  +
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+E F KMQ   + P+++TF  +L+AC+HAG++         M++++G  P +EHYGC+V
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRAG L EAEE+I +MP++PNAA+W ALL AC  HG +E G+++GKIL++++P +  
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                          +  A++R+ MKE+G+   PG S+I VNG  HEF  GD SHPQ+KE
Sbjct: 455 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 514

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I  ML++I+E+L+ EGY P    +L D++++EKETA  +HSEKLA+ FG I+T PG TIR
Sbjct: 515 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIR 574

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLRVCEDCH+  KLISKV+ R+I++RDR R+H F++G C+C D+W
Sbjct: 575 IVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/648 (41%), Positives = 400/648 (61%), Gaps = 51/648 (7%)

Query: 25  PTSEFSQKT----ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           PTS+ S ++     L +L  +C ++ + L+Q H  +LK+G   D   +  L+   A+   
Sbjct: 8   PTSQLSSESNAAQTLHLLQ-RC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS 65

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            +   A  VF+ + +PN F+WN+++R      EP   + LY  M+      N +T+P + 
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           KACS   A +E  Q+HAH++K G                 FG              S++ 
Sbjct: 126 KACSSMSALEETQQIHAHIIKMG-----------------FG--------------SEIY 154

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             N+L++ Y K GDI+ A+ LF     ++T S+N+MI G+ + G  E A ++FN M +++
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERN 214

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            I+W+++I G    G  KEAL +F+ MQ   IK     L   L ACA LG LDQG WIH 
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           ++K++ I +D +LG  L+DMYAKCG L+ A +VF  M+ K V  W AMI G A+HGR  +
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+E F KMQ   + P+++TF  +L+AC+HAG++         M++++G  P +EHYGC+V
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRAG L EAEE+I +MP++PNAA+W ALL AC  HG +E G+++GKIL++++P +  
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                          +  A++R+ MKE+G+   PG S+I VNG  HEF  GD SHPQ+KE
Sbjct: 455 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 514

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I  ML++I+E+L+ EGY P    +L D++++EKETA  +HSEKLA+ FG I+T PG TIR
Sbjct: 515 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIR 574

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLRVCEDCH+  KLISKV+ R+I++RDR R+H F++G C+C D+W
Sbjct: 575 IVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/644 (42%), Positives = 398/644 (61%), Gaps = 60/644 (9%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           L + + +   S   +KQ HA ++ +G       +  L+K    S F +   A ++F+ + 
Sbjct: 17  LQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIP 76

Query: 95  KPNVFVWNSVLRA-----CLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEA 148
           KP+VF++N++++A        HN     + ++  MV V    PN++T+  VFKAC     
Sbjct: 77  KPDVFIYNTMIKAHAVIPTSSHNS----MRIFLSMVRVSGFLPNRYTFVFVFKACGNGLG 132

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
             EG Q+  H +K GL                               +S++   NA+I  
Sbjct: 133 VLEGEQIRVHAIKIGL-------------------------------ESNLFVTNAMIRM 161

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
           Y   G ++ A+ +F  + D++  S+N MI G+   G    A+++F+EM+++D ++W+ II
Sbjct: 162 YANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTII 221

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            GY + G +KEAL++F+EM +    P +F L+  LAACA+L ALDQG WIH ++ ++ I 
Sbjct: 222 AGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIK 281

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFED---MKMKEVFTWNAMIGGLAMHGRADDAIELF 385
           ++  L  +L+DMYAKCG +D A KVF D   +K+K V+ WNAMIGG AMHG++ +AI+LF
Sbjct: 282 MNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLF 340

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M+ EK+ P+++TF  +L+AC+H  +++ G      M   YGI+PE+EHYGC+VDLLGR
Sbjct: 341 EQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGR 400

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC---- 501
           +G L EAEE + +MPM P+A +W ALLGACR H ++E G+R+GKI+ E++  +  C    
Sbjct: 401 SGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLL 460

Query: 502 ----------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                     D+   +R+ ++  G K  PG S I++NGV H+F  GD SHPQ K++YL L
Sbjct: 461 ANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFL 520

Query: 552 KKIIEKLKMEGYSPNSSQVLFDI-DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
            ++  KLK  GY P   +VL DI DEE+KETA   HSEKLAIAFG INT PG  IR++KN
Sbjct: 521 DEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKN 580

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LRVC DCH ATK ISKV+KR+IIVRDR+RYHHF++G CSC D+W
Sbjct: 581 LRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/696 (39%), Positives = 402/696 (57%), Gaps = 90/696 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVLR 106
           LKQ H++I+KSG     +    L++  A S   +   AL +F+S+H   PN+F+WN+++R
Sbjct: 41  LKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIR 100

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A      P   + L+S+M+     PN  T+P++FK+C+ ++A  E  Q+HAH +K  L  
Sbjct: 101 AHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHL 160

Query: 167 DVHVKSSGIQMYACFG-------------------------------CVNKARQILDDGS 195
             HV +S I MY+  G                                V+ AR++ D+  
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIP 220

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKD---------------------------- 227
             DV+ WNA+I GY++ G  E A   F   ++                            
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280

Query: 228 -----------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                      KN    NA++  +++ G    ARKLF+ M DKD I W+ +I GY     
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSL 340

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV---- 332
           Y+EAL +F  M R+ + P       VL ACASLGALD G W+H ++ +N      V    
Sbjct: 341 YEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVS 400

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           L T+++ MYAKCG +++A +VF  M  + + +WNAMI GLAM+G A+ A+ LF +M  E 
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEG 460

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            +PD ITF  VLSAC  AG ++ G +  + M + YGI P+++HYGC++DLL R+G   EA
Sbjct: 461 FQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEA 520

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
           + ++ +M MEP+ A+W +LL ACR HG+VEFGE + + L E+EP+N              
Sbjct: 521 KVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGA 580

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            R DDVAK+R  + ++G+K  PG + I+++GV+HEF  GD  HPQ + I+ ML ++   L
Sbjct: 581 GRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLL 640

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           +  G+ P++S+VL+D+DEE KE A   HSEKLAIAFG I+T PG+TIR++KNLRVC +CH
Sbjct: 641 EETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCH 700

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SATKLISK+F R+II RDR R+HHF++G CSCND W
Sbjct: 701 SATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/639 (39%), Positives = 395/639 (61%), Gaps = 36/639 (5%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           LD+   K   S + LKQ HA ++K+G   D+ ++  +++  A S F +   AL VF+ + 
Sbjct: 17  LDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLP 76

Query: 95  KPNVFVWNSVLRACLE-HNEPWRVISLYSEMVG-VDSKPNKFTYPTVFKACSITEADKEG 152
           + N F WN+V+RA  E  +     + ++ +M+     +PN+FT+P+V KAC++     EG
Sbjct: 77  ERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEG 136

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            QVH  ++K GL  D  V ++ ++MY   G +  A  +                  Y   
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF-----------------YRNV 179

Query: 213 GDIEGAKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
             ++  + L +  + +  N    N M+ G+AR G  + AR+LF+ M  +  ++W+ +I G
Sbjct: 180 EGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISG 239

Query: 271 YTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           Y ++G+YKEA+E+F+ M Q   + P +  L  VL A + LG L+ G W+H + ++N I +
Sbjct: 240 YAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRI 299

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D VLG+ALVDMYAKCG ++ A +VFE +    V TWNA+IGGLAMHG+A+D      +M+
Sbjct: 300 DDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME 359

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           +  + P  +T+  +LSAC+HAG++D G      M    G+ P++EHYGC+VDLLGRAGYL
Sbjct: 360 KCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYL 419

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC-------- 501
            EAEE+I +MPM+P+  +W+ALLGA + H  ++ G R  ++L++M P +           
Sbjct: 420 EEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMY 479

Query: 502 ------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
                 D VA +R +MK+  I+ +PG S I+++GVIHEF   D SH + K+I+ ML++I 
Sbjct: 480 ASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEIS 539

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            KL +EG+ P+++QVL  +DE+ KE+   YHSEK+A+AFG I+T P   + ++KNLR+CE
Sbjct: 540 NKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICE 599

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCHS+ KLISK+++R I++RDR R+HHF +G CSC D+W
Sbjct: 600 DCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/629 (41%), Positives = 401/629 (63%), Gaps = 44/629 (6%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL--ALKVFNSVHKPNVFVWNSVLR 106
           L Q HAV +KSG  +D   +  +++  A S   + +L  A K+FN + + N F WN+++R
Sbjct: 39  LSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIR 98

Query: 107 ACLEHNEPWRVI--SLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
              E +E   +I  +L+ EM+  +  +PN+FT+P+V KAC+ T   +EG Q+H   +K G
Sbjct: 99  GFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYG 158

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
             GD  V S+ ++MY   G +  AR          V+ +  +I+           K++  
Sbjct: 159 FGGDEFVMSNLVRMYVMCGFMKDAR----------VLFYKNIIE-----------KDMVV 197

Query: 224 ST----KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
            T    +D     +N MI G+ R G  + AR LF++M  +  ++W+ +I GY+ +G++K+
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+EVF EM++  I+P    L  VL A + LG+L+ G W+H + + + I +D VLG+AL+D
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 317

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY+KCG ++ A  VFE +  + V TW+AMI G A+HG+A DAI+ F KM++  +RP  + 
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           +  +L+AC+H G+++ G +  + M  + G++P +EHYGC+VDLLGR+G L EAEE I +M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVA 505
           P++P+  +W+ALLGACR  G VE G+R+  IL++M P +                  +V+
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           +MR  MKE+ I+ +PG S+ID++GV+HEF   D SHP+ KEI  ML +I +KL++ GY P
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            ++QVL +++EE+KE    YHSEK+A AFG I+T PG  IR++KNLR+CEDCHS+ KLIS
Sbjct: 558 ITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLIS 617

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KV+KR I VRDR R+HHF++G CSC D+W
Sbjct: 618 KVYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/685 (39%), Positives = 405/685 (59%), Gaps = 56/685 (8%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+S+ ++   +D L T C TS    KQAHA++L++    +   S  L+   A S   +  
Sbjct: 4   PSSKCTKLISVDFLKTHC-TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN 62

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A K+F  +  P+ F+ N+++R       P+  +SLY  MV      + +TYP V  AC+
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A K G + H  V+KNG   D+ V ++ IQ Y   G    A  + D+ +  DV+ WN 
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 205 LIDGYL------------------------------------KCGDIEGAKELFKSTK-- 226
           +I+ +L                                    + G++E  K L   +K  
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 227 --DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             D+N    NA++  + +    E A+++FN + +KD ++W++++ G  K GY++EAL +F
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +MQ +KI+  +  L  VL+ACA  GALDQG +IH  + +  I  D VL TALVDMYAKC
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D+A +VF  M+++ VFTWNA+IGGLAMHG  +DAI LF +M+ +K+ PD +TF  +L
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            AC+HAG++D GL     M+  + I+P +EHYGC+VDLL RA  + +A   I +MP++ N
Sbjct: 423 CACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKAN 482

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           + +W  LLGACR  G  +  E++G+ ++E+EP +               + D   K+RK 
Sbjct: 483 SVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQ 542

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQ 569
           MK +GI+  PG S I++NG+IH+F  GD SH Q ++IY M++++  ++ ++ G+ P ++ 
Sbjct: 543 MKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTAN 602

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VLFDI+EEEKE +   HSEKLAIA G I+T  G+ IR++KNLRVC DCHS  K+ SKV+ 
Sbjct: 603 VLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYN 662

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+I+ RDR R+HHF+ G CSC DFW
Sbjct: 663 REIVARDRSRFHHFKEGSCSCMDFW 687


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/732 (38%), Positives = 415/732 (56%), Gaps = 93/732 (12%)

Query: 14  LKPEEISATNIPTSE----FSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSG 69
           L    IS  N  T      F    IL  ++ KC +S Q LK+ HA +L++G F D + + 
Sbjct: 4   LSVPSISLQNFSTLNNNLLFRNHQILSTID-KCSSSKQ-LKEVHARMLRTGLFFDPFSAS 61

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VD 128
            L    A S FS  + A  +F+ + +PN++ WN+++RA    ++P++   ++ +++   +
Sbjct: 62  KLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCE 121

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVK----------------NGLCGDVHVK- 171
             PNKFT+P V KA S  +A + G  VH   +K                 G CGD+ +  
Sbjct: 122 DLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAE 181

Query: 172 --------------SSGIQMYACFGCVNKARQI--------------------------L 191
                         +S I  +A   C   A ++                          L
Sbjct: 182 RLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKL 241

Query: 192 D-------------DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
           D              G K D+   NA++D Y KCG ++ A++LF    +++  S+  M+ 
Sbjct: 242 DLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLD 301

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKF 297
           G+A+ G ++ AR +FN M  K+   W+ +I  Y ++G  KEAL +FNE+Q  KI KP + 
Sbjct: 302 GYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEV 361

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L   L+ACA LGA+D G WIH ++KR  I ++  L ++LVDMYAKCG L+ A +VF  +
Sbjct: 362 TLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSV 421

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
           + ++V+ W+AMI GL MHGR   AI+LFF+MQ  K++P+ +TF  VL AC+HAG++D G 
Sbjct: 422 EERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGR 481

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                M+ +YG+ PE++HY C+VD+LGRAG+L EA E+I+ M   P+A+VW ALLGAC  
Sbjct: 482 VFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSL 541

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSS 523
           H  VE GE     LL++EP+N               R + V+++RKLM++  +K  PG S
Sbjct: 542 HMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCS 601

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETA 582
            I+ NG +HEF  GD +HP    IY  L++I  KLK  GY PN S +L  I+E++ KE A
Sbjct: 602 SIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQA 661

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +   P   IRV+KNLR+C DCH+  KL+S+V+ RDI++RDR R+HH
Sbjct: 662 LSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHH 721

Query: 643 FRNGKCSCNDFW 654
           FR+G CSC D+W
Sbjct: 722 FRDGHCSCMDYW 733


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/661 (40%), Positives = 388/661 (58%), Gaps = 57/661 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            LKQ HA +L++G F D + +  +V   +     + + A  VF+ +  P  +  NS++R 
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           C + N     +  Y EM+     P+++T+P++FK+C       EG Q+H H  K G   D
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASD 119

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
            + +++ + MY+  GC+  AR++ D      V+ W  +I  + +      A  LF     
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 223 -KSTKDKNTGSYNAMIS--------------------GFARF--------------GRFE 247
            ++ K       N + +                    GF R               G  +
Sbjct: 180 SENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ 239

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR LF++  +K+  +W+ +I+G+ +D  Y+EAL +F EMQ   IK  K  ++ +L AC 
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACT 299

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LGAL+ G W+H ++K+  I VD  LGTALVDMYAKCG ++ A +VF +M  K+V TW A
Sbjct: 300 HLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTA 359

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I GLAM G+A++A++ F +M  + ++PD ITF  VL+AC+HAG +D G+     M   Y
Sbjct: 360 LILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTY 419

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P +EHYG +VD+LGRAG +AEAEE+I SMPM P+  V   LLGACR HG +E  ER 
Sbjct: 420 GIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERA 479

Query: 488 GKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K LLE++P               +++ ++  + R+LM ERG++  PG S I+V+GV+HE
Sbjct: 480 AKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHE 539

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SH Q  EI  ML+ +I KLK  GY P+ S+VLFD+ EEEKET    HSEKLAIA
Sbjct: 540 FVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIA 599

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG ++T  G  IRV+KNLR+C DCHSATKLISK++ R+IIVRDR R+HHF++G CSC  F
Sbjct: 600 FGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGF 659

Query: 654 W 654
           W
Sbjct: 660 W 660



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 138/310 (44%), Gaps = 26/310 (8%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           ++KP E++  N+ T+    + +  +            K+ H  I + G F  H V  T++
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMV------------KRIHEYIDEHG-FGRHVVLNTVL 228

Query: 73  KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
                 +    +LA  +F+   + N+F WN ++   +E +     + L+ EM     K +
Sbjct: 229 M-DVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGD 287

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           K T  ++  AC+   A + G  +HA++ K  +  DV + ++ + MYA  G +  A Q+  
Sbjct: 288 KVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFH 347

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEE 248
           +  + DV+ W ALI G   CG  E A + F     K       ++  +++  +  G  +E
Sbjct: 348 EMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDE 407

Query: 249 ARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
               FN M+D   I      +  ++D   + G   EA E+   M    + P +FVL  +L
Sbjct: 408 GISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSM---PMAPDQFVLGGLL 464

Query: 304 AACASLGALD 313
            AC   G L+
Sbjct: 465 GACRIHGNLE 474


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/725 (38%), Positives = 408/725 (56%), Gaps = 91/725 (12%)

Query: 19  ISATNI---PT--SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           ISAT +   PT      Q   L ++ T C +  Q LKQ H+  + +G   +  V   ++ 
Sbjct: 2   ISATTLSPPPTHLPSLPQTPPLSLIKT-CKSMAQ-LKQIHSQTICTGLISNPIVPAQIIA 59

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
                   + E A  VF+++  PN FVWN++++       P   +S+Y EM+     P++
Sbjct: 60  FCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDE 119

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +TYP + K  +   A K G ++H H+VK G   +V V+++ I +Y+  G V+ AR + D 
Sbjct: 120 YTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDR 179

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELF----------------------KSTKDKNTG 231
            SK DV+ WN +I GY +    + + +LF                         KD N G
Sbjct: 180 SSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVG 239

Query: 232 SY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK- 273
                              NA+I  +A  G  + A  +F+ M  +D I+W+AI+ G+T  
Sbjct: 240 KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNL 299

Query: 274 -------------------------DGY-----YKEALEVFNEMQRDKIKPRKFVLSCVL 303
                                    DGY     +KE L +F EMQ   IKP +F +  +L
Sbjct: 300 GQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            ACA LGAL+ G WI  ++ +N I +D+ +G AL+DMY  CG ++ A ++F  M  ++  
Sbjct: 360 TACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 419

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W A+I GLA++G  ++A+++F +M +  + PD +T   VL AC H+GM+D+G +    M
Sbjct: 420 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARM 479

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              +GI+P V HYGC+VDLLGRAG+L EA EVI +MP++PN+ VW +LLGACR H + E 
Sbjct: 480 TTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEM 539

Query: 484 GERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E   + +LE+EP+N               R + + ++RKLM +RGIK  PG S+I++NG
Sbjct: 540 AEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNG 599

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
            +HEF  GD  HPQ KEIY  L ++   LK  GYSP++S+V  DI EEEKE+A   HSEK
Sbjct: 600 SVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEK 659

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG I++ PG TIR++KNLR+C DCH   KL+SKV+ R++IVRDR R+HHFR+G CS
Sbjct: 660 LAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCS 719

Query: 650 CNDFW 654
           C D+W
Sbjct: 720 CKDYW 724


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/640 (41%), Positives = 395/640 (61%), Gaps = 58/640 (9%)

Query: 40  TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
           ++C T+ +HLKQ HA  +K+G       +  L+K    S     + A K F+ +H PN F
Sbjct: 23  SRCKTT-RHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCF 81

Query: 100 VWNSVLRAC-------LEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADK 150
            WN+++RA        L H      +  +S M+  D   +PNKFT+P V KAC+     +
Sbjct: 82  SWNTIIRALADSDDDDLFHVNSLEALLYFSHML-TDGLVEPNKFTFPCVLKACAKLARIE 140

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG Q+H  VVK GL  D  V+S+                               L+  Y+
Sbjct: 141 EGKQLHGFVVKLGLVSDEFVRSN-------------------------------LVRVYV 169

Query: 211 KCGDIEGAKELFKSTK-DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
            CG ++ A  LF  T+ + N   +N MI G+ R G    +R+LF+ M +K  ++W+ +I 
Sbjct: 170 MCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMIS 229

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G  ++G++KEA+E+F++MQ   + P    L  VL A + LGA++ G W+H   ++N I +
Sbjct: 230 GCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEI 289

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDAIELFFKM 388
           D VLG+AL+DMY+KCG +D A +VFE ++ K+   TW+A+IGGLAMHGRA DA++ F++M
Sbjct: 290 DDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRM 349

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
           Q+  + P  + +  VLSAC+HAG+++ G     +M  + G+ P +EHYGC+VDLLGRAG 
Sbjct: 350 QQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGC 409

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------- 499
           L EAE++I +MP++P+  + +ALLGAC+ HG +E GER+ KIL+   P +          
Sbjct: 410 LEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNM 469

Query: 500 -----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                  + V K+R  MKE  I+ +PG S I+++GVIHEF   D SHP+ + I+ ML+++
Sbjct: 470 FASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEM 529

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
            ++L+  GY PN++QVL ++DE+EK++A  YHSEK+AIAFG I+T P   ++++KNLRVC
Sbjct: 530 SDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVC 589

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           EDCHS+ KL+SK++ R IIVRDR R+HHF NG CSC D+W
Sbjct: 590 EDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/737 (37%), Positives = 419/737 (56%), Gaps = 92/737 (12%)

Query: 5   VTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG-HFQ 63
           V ++  P H  P   S+++ P         L +L+  C T  Q L+  HA ++K+G H  
Sbjct: 10  VPSSSYPFHFLP---SSSDPPYDSLRNHPSLSLLHN-CKT-LQSLRLIHAQMIKTGLHNT 64

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           ++ +S  L  C  +  F     A+ VF ++ +PN+ +WN++ R     ++P   + LY  
Sbjct: 65  NYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVC 124

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY----- 178
           M+ +   PN +T+P + K+C+ ++A KEG Q+H HV+K G   D+ V +S I +Y     
Sbjct: 125 MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGR 184

Query: 179 --------------------------ACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
                                     A  G +  A+++ D+    DV+ WNA+I GY + 
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 213 GDIEGAKELFKSTKDKN-----------------TGS----------------------Y 233
           G+ + A ELFK     N                 +GS                       
Sbjct: 245 GNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 304

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N+++  +++ G  E A  LF  +  KD I+W+ +I GYT    YKEAL +F EM R   +
Sbjct: 305 NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER 364

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAW 351
           P    +  +L ACA LGA+D G WIH ++ +   S    + L T+L+DMYAKCG ++ A 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAH 424

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VF  +  K + +WNAMI G AMHGRAD A ++F +M++  + PD ITF  +LSAC+ +G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSG 484

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           M+D G      M Q Y I P++EHYGC++DLLG +G   EAEE+I++M MEP+  +W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSL 544

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIK 517
           L AC+  G VE GE   + L+++EP+N  C              ++VAK+R L+ ++G+K
Sbjct: 545 LKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMK 604

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+  G+ P++S+VL +++EE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
            KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH ATKLISK++KR+II RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHFR+G CSCND+W
Sbjct: 725 TRFHHFRDGVCSCNDYW 741


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/741 (39%), Positives = 417/741 (56%), Gaps = 97/741 (13%)

Query: 5   VTTTDLPH--HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHF 62
           VT++  P   H  P    A++ P     Q   L++L  KC  +    KQ H++I+K+G  
Sbjct: 4   VTSSPSPSILHFLP----ASDPPYKILEQHPYLNLLE-KC-KNINTFKQIHSLIIKTGLN 57

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVF---NSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
              +V   L+   A S   +   AL +F      HK NVF+WNS++R     + P   + 
Sbjct: 58  NTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLH 117

Query: 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
           L+S M+    +PN  T+P +FK+C+  +A  EG Q+HAH +K  L  + HV +S I MYA
Sbjct: 118 LFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYA 177

Query: 180 CFG-------------------------------CVNKARQILDDGSKSDVICWNALIDG 208
             G                               C++ AR++ D+    DV+ WNA+I G
Sbjct: 178 SVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISG 237

Query: 209 YLKCGDIEGAKELFKSTKDKNT--------------------------GSY--------- 233
           Y++ G  E A   F   ++ N                           GS+         
Sbjct: 238 YVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSN 297

Query: 234 ----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
               NA+I  + + G  + AR+LF+ + +KD I+W+ +I GY+    Y+EAL +F  M R
Sbjct: 298 LQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLR 357

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLD 348
             +KP       +L ACA LGALD G W+H ++ +N     +A L T+L+DMYAKCG ++
Sbjct: 358 SNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIE 417

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITFACVLSAC 407
            A +VF  M  + + +WNAM+ G AMHG A+ A+ LF +M  + + RPD ITF  VLSAC
Sbjct: 418 AAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSAC 477

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
             AG++D G Q    M Q YGI P+++HYGC++DLL RA    EAE ++ +M MEP+ A+
Sbjct: 478 TQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAI 537

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W +LL AC+ HG VEFGE + + L ++EP+N               R DDVA++R  + +
Sbjct: 538 WGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLND 597

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           +G+K  PG + I+++G +HEF  GD  HP+   IY ML ++ + L+  G+ PN+S+VL+D
Sbjct: 598 KGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYD 657

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           +DEE KE A   HSEKLAI+FG I T PG TIR++KNLRVC +CHSATKLISK+F R+II
Sbjct: 658 MDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 717

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
            RDR R+HHF++G CSCND W
Sbjct: 718 ARDRNRFHHFKDGFCSCNDCW 738


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/636 (40%), Positives = 389/636 (61%), Gaps = 41/636 (6%)

Query: 40  TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNV 98
           T C T  + LKQ HA+ +K+G  QD   +  ++K C  +SR  + + A  VF  + +PN 
Sbjct: 27  TSCKTP-RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSR--DIDYARAVFRQMPEPNC 83

Query: 99  FVWNSVLRACLEHNEPW---RVISLYSEMV-GVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           F WN++LR   E N+       + L+S M+     KPN+FT+P+V KAC+     +EG Q
Sbjct: 84  FCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQ 143

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +H  +VK G   D  V S+ ++MY     +  A  +          C N +        D
Sbjct: 144 IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF---------CKNVV--------D 186

Query: 215 IEGA--KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
            +G+   EL K  +D N   +N MI G  R G  + A+ LF+EM  +  ++W+ +I GY 
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYA 246

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           ++G++ EA+ +F EMQ   I P    L  VL A A +GAL+ G WIH +  +N I +D V
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV 306

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           LG+ALVDMY+KCG +D A +VFE +  +   TW+A+IG  AMHGRA+DAI  F  M +  
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P+ + +  +LSAC+HAG+++ G    ++M ++ G+ P +EHYGC+VDLLGRAG+L EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
           EE+I +MP+EP+  +W+ALLGAC+ H  ++ GER+ + L+E+ P +              
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
              + VA++R  MK   I+ +PG S I+++G+IHEF   D SH + KEI  ML ++  KL
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           +  GY PN+ +V  + DE+E+  A +YHSEK+A+AFG I+T P   ++++KNLR+CEDCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ KLIS ++KR IIVRDR R+H F +G CSC D+W
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/698 (37%), Positives = 398/698 (57%), Gaps = 85/698 (12%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC + +Q LKQ H+  +K G   D      ++             A +VF+++ +P +F+
Sbjct: 16  KCKSMYQ-LKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFI 74

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN++++     N P   +S+Y  M+  + KP++FT+P + K  +   A + G  +  H V
Sbjct: 75  WNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV 134

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------- 209
           K+G   ++ V+ + I M++    V+ AR++ D G   +V+ WN ++ GY           
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKM 194

Query: 210 ------------------------LKCGDIEGAKELFKSTK----DKNTGSYNAMISGFA 241
                                    K  D+EG K ++K       ++N    N +I  FA
Sbjct: 195 LFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFA 254

Query: 242 RFGRFEE-------------------------------ARKLFNEMNDKDEITWSAIIDG 270
             G  +E                               ARK F+++ ++D ++W+A+IDG
Sbjct: 255 ACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDG 314

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y +   + EAL +F EMQ   +KP +F +  +L ACA LGAL+ G W+  ++ +NSI  D
Sbjct: 315 YLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKND 374

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +G AL+DMY KCG +  A KVF++M  K+ FTW AMI GLA++G  ++A+ +F  M  
Sbjct: 375 TFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIE 434

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             + PD IT+  VL AC HAGM+++G      M   +GI P V HYGC+VDLLGRAG L 
Sbjct: 435 ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLE 494

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------ 498
           EA EVI +MP++PN+ VW +LLGACR H  V+  E   K +LE+EP+N            
Sbjct: 495 EAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYA 554

Query: 499 --RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
             +R +++ ++RKLM ERGIK  PG S++++NG ++EF  GD SHPQ KEIY  L+ +++
Sbjct: 555 ACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQ 614

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
            L   GYSP++S+V  D+ EE+KETA   HSEKLAIA+  I++ PG TIR++KNLR+C D
Sbjct: 615 DLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVD 674

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KL+S+ + R++IVRD+ R+HHFR+G CSCN+FW
Sbjct: 675 CHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/623 (39%), Positives = 383/623 (61%), Gaps = 47/623 (7%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           HLK  HA ++++    D + +  L+      +S  S  + A ++F+ +  PN+F++N+++
Sbjct: 32  HLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMI 91

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R       P +    Y +       P+  T+P + K+C+       G Q H H++K+G  
Sbjct: 92  RGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFE 151

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV+V+                               N+L+  Y   GD E A  +F+  
Sbjct: 152 KDVYVQ-------------------------------NSLVHMYATFGDTEAATLIFQRM 180

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
              +  S+ +MI GF + G  E ARKLF++M +K+ +TWS +I GY ++ ++ +A+E+F 
Sbjct: 181 YYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK 240

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            +Q   ++  + V+  V+++CA LGAL+ G   HD+V +N + ++ +LGTALVDMYA+CG
Sbjct: 241 VLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCG 300

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +D A  VFED+  ++  +W A+I GLAMHG ++ +++ F  M    + P  ITF  VLS
Sbjct: 301 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H G+++RG Q    M++ + ++P +EHYGC+VDLLGRAG L EAE  +  MP++PNA
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            VW ALLGACR H   E GER+GKIL+++ PQ+              +  + V +MR++M
Sbjct: 421 PVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMM 480

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K +G+K  PG S+I+++G +H+F  GD SHP++ +I  M ++I+ +++  GY  N++  L
Sbjct: 481 KAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADAL 540

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FDIDEEEKE+A   HSEKLAIAFG + ++ G  IR++KNLRVCEDCH+ATKLISKVF R+
Sbjct: 541 FDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRE 600

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           +IVRDR R+HHFR G CSC D+W
Sbjct: 601 LIVRDRNRFHHFRQGLCSCMDYW 623


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/671 (39%), Positives = 391/671 (58%), Gaps = 90/671 (13%)

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C  +  F     A+ VF ++ +PN+ +WN++LR     ++P   + +Y  MV +   PN 
Sbjct: 5   CVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNS 64

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +++P + K+C+ ++A +EG Q+HA V+K G   D +V +S I MYA  G +  AR++ D 
Sbjct: 65  YSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDA 124

Query: 194 GS-------------------------------KSDVICWNALIDGYLKCGDIEGAKELF 222
            S                               + DV+ WNA+I GY++ G  E A ELF
Sbjct: 125 SSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELF 184

Query: 223 KSTKDKN-----------------TGS--------------------------YNAMISG 239
           K     N                 +GS                           NA+I  
Sbjct: 185 KEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDL 244

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +++ G  E A  LF  ++ KD ++W+ +I GYT    YKEAL +F EM R    P    L
Sbjct: 245 YSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTL 304

Query: 300 SCVLAACASLGALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
             VL ACA LGA+D G WIH ++  K   +  +  L T+L+DMYAKCG ++ A +VF  M
Sbjct: 305 LSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             + + +WNAMI G AMHGRA+ A +LF +M+  ++ PD ITF  +LSAC+H+G++D G 
Sbjct: 365 LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGR 424

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           Q    M Q Y + P++EHYGC++DLLG +G   EAEE+I +MPMEP+  +W +LL AC+K
Sbjct: 425 QIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKK 484

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSS 523
           HG +E  E   + L+++EP+N               R +DVA++R ++  +G+K  PG S
Sbjct: 485 HGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCS 544

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+V+ V+HEF  GD  HP+ +EIY ML+++  +L+  G++P++S+VL +++EE KE A 
Sbjct: 545 SIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGAL 604

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH ATKLISK++KR+I+ RDR R+HHF
Sbjct: 605 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHF 664

Query: 644 RNGKCSCNDFW 654
           R+G CSC D+W
Sbjct: 665 RDGVCSCCDYW 675


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/735 (38%), Positives = 417/735 (56%), Gaps = 96/735 (13%)

Query: 10  LPHHLKPEEISATNIPTS--EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV 67
           LP H      S  N PT+  E S+ TI  I   +C +S + LKQ HA ++++G F D Y 
Sbjct: 12  LPRH---PNFSNPNQPTTNNERSRHTISLI--DRC-SSLRQLKQTHAHMIRTGMFSDPYS 65

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
           +  L    A S F++ E A KVF+ + +PN F WN+++RA     +P   I  + +MV  
Sbjct: 66  ASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSS 125

Query: 128 DSK--PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL----------------CGDVH 169
           +S+  PNK+T+P + KA +   +   G  +H   +K+ +                CGD+ 
Sbjct: 126 ESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLD 185

Query: 170 --------------------------------------------VKSSGIQMYACFGCVN 185
                                                       VK+S + M        
Sbjct: 186 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245

Query: 186 KARQ----------ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
           K R           I ++    ++   NA++D Y KCG IE AK LF + ++K+  ++  
Sbjct: 246 KIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 305

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKP 294
           M+ G+A    +E AR++ N M  KD + W+A+I  Y ++G   EAL VF+E+Q  K IK 
Sbjct: 306 MLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKL 365

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            +  L   L+ACA +GAL+ G WIH ++K+N I ++  + +AL+ MY+KCG L+ A +VF
Sbjct: 366 NQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
             ++ ++VF W+AMIGGLAMHG   +A+++F+KMQ   ++P+ +TF  V  AC+H G++D
Sbjct: 426 NSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 485

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
                   M+  YGI PE +HY CIVD+LGR+GYL +A + I +MP+ P+ +VW ALLGA
Sbjct: 486 EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           C+ H  +   E     LLE+EP+N               + D+V+++RK M+  G+K  P
Sbjct: 546 CKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEP 605

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-K 579
           G S I+++G+IHEF +GD +HP  +++Y  L +++EKLK  GY P  S VL  I+EEE K
Sbjct: 606 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMK 665

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E +   HSEKLAI +G I+T+    IRVIKNLR+C DCH+  KLIS+++ R+IIVRDR R
Sbjct: 666 EQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYR 725

Query: 640 YHHFRNGKCSCNDFW 654
           +HHFRNG+CSCNDFW
Sbjct: 726 FHHFRNGQCSCNDFW 740


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/652 (40%), Positives = 395/652 (60%), Gaps = 43/652 (6%)

Query: 26  TSEFSQKT--ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSN 82
           T  FS +   IL    T C T  + LKQ HA+ +K+G  QD   +  ++K C  +SR  +
Sbjct: 11  TLNFSPQPPLILSKPFTSCKTP-RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSR--D 67

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPW---RVISLYSEMV-GVDSKPNKFTYPT 138
            + A  VF  + +PN F WN++LR   E N+       + L+S M+     KPN+FT+P+
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+     +EG Q+H  +VK G   D  V S+ ++MY     +  A  +        
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF------- 180

Query: 199 VICWNALIDGYLKCGDIEGA--KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
             C N +        D +G+   EL K  +D N   +N MI G  R G  + A+ LF+EM
Sbjct: 181 --CKNVV--------DFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +  ++W+ +I GY ++G++ EA+ +F EMQ   I P    L  VL A A +GAL+ G 
Sbjct: 231 PPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGK 290

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           WIH +  +N + +D VLG+ALVDMY+KCG +D A +VFE +  +   TW+A+IG  AMHG
Sbjct: 291 WIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHG 350

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           RA+DAI  F  M +  + P+ + +  +LSAC+HAG+++ G    ++M ++ G+ P +EHY
Sbjct: 351 RAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHY 410

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLLGRAG+L EAEE+I +MP+EP+  +W+ALLGAC+ H  ++ GER+ + L+E+ P
Sbjct: 411 GCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAP 470

Query: 497 QNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
            +                 + VA++R  MK   I+ +PG S I+++G+IHEF   D SH 
Sbjct: 471 HDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHS 530

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
           + KEI  ML ++  KL+  GY PN+ +V  + DE+E+  A +YHSEK+A+AFG I+T P 
Sbjct: 531 KAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQ 590

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             ++++KNLR+CEDCH++ KLIS ++KR IIVRDR R+H F +G CSC D+W
Sbjct: 591 HPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/591 (43%), Positives = 376/591 (63%), Gaps = 18/591 (3%)

Query: 77  NSRFSNFELALKVFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN--K 133
           +S   N   ++ +FN  +  PN+F +N++L+A  +HN     IS ++  + + + PN  +
Sbjct: 68  SSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDE 127

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +T+ +V KAC+      EG +VH  V K G   ++ V++S + +Y   GC   A+++ D+
Sbjct: 128 YTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE 187

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
               DV+ WN LI GY   G ++ A+ +F    +KN  S++ MISG+AR G  EEAR+LF
Sbjct: 188 MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLF 247

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGAL 312
             M  ++ ++W+A+I GY ++  Y +A+E+F +MQ +  + P    L  VL+ACA LGAL
Sbjct: 248 ENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGAL 307

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
           D G WIH  ++RN I V   LG AL DMYAKCG +  A  VF +M  ++V +W+ +I GL
Sbjct: 308 DLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGL 367

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           AM+G A++A   F +M  + + P+ I+F  +L+AC HAG++D+GL+    M Q+YGI P+
Sbjct: 368 AMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPK 427

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +EHYGC+VDLL RAG L +AE +I+SMPM+PN  VW ALLG CR + + E GER+   +L
Sbjct: 428 IEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRIL 487

Query: 493 EMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           E++  +               R DD A  R  M++      PG S I++N  ++EF  GD
Sbjct: 488 ELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGD 547

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHPQ   IY M++++  K+K+ GY P +  V+ +IDEEEKE A   HSEKLA+AFG IN
Sbjct: 548 SSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLIN 607

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           T  G TIR++KNLRVC DCH A K+ISK+ +R+I+VRDR R+HHF++GKCS
Sbjct: 608 TSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/624 (40%), Positives = 377/624 (60%), Gaps = 47/624 (7%)

Query: 47  QHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           + LKQ HA +LK+G  QD Y ++  L  C +++       A  VF+   +P+ F+WN ++
Sbjct: 28  EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R     +EP R + LY  M+   +  N +T+P++ KACS   A +E  Q+HA + K G  
Sbjct: 88  RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY- 146

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                         ++DV   N+LI+ Y   G+ + A  LF   
Sbjct: 147 ------------------------------ENDVYAVNSLINSYAVTGNFKLAHLLFDRI 176

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            + +  S+N++I G+ + G+ + A  LF +M +K+ I+W+ +I GY +    KEAL++F+
Sbjct: 177 PEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFH 236

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           EMQ   ++P    L+  L+ACA LGAL+QG WIH ++ +  I +D+VLG  L+DMYAKCG
Sbjct: 237 EMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCG 296

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++ A +VF+++K K V  W A+I G A HG   +AI  F +MQ+  ++P+ ITF  VL+
Sbjct: 297 EMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLT 356

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC++ G+++ G      M++ Y + P +EHYGCIVDLLGRAG L EA+  I  MP++PNA
Sbjct: 357 ACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNA 416

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLM 511
            +W ALL ACR H  +E GE +G+IL+ ++P               +++ D  A+ R+LM
Sbjct: 417 VIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLM 476

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           KE+G+   PG S I + G  HEF  GD SHP++++I    + +  KL+  GY P   ++L
Sbjct: 477 KEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEML 536

Query: 572 FD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
            D +D++E+E     HSEKLAI +G I T PG  IR++KNLRVC+DCH  TKLISK++KR
Sbjct: 537 LDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKR 596

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           DI++RDR R+HHFR+GKCSC D+W
Sbjct: 597 DIVMRDRTRFHHFRDGKCSCGDYW 620


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 385/625 (61%), Gaps = 47/625 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+  HLK  HA ++++    D + +  L+    N    ++  A +VF  +  PN+F++NS
Sbjct: 26  TTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDY--AAQVFYQIQNPNLFIYNS 83

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
            +R      +P +    Y +       P+  TYP + KAC+   +   G+Q H  ++++G
Sbjct: 84  FIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHG 143

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              DV+V+                               N+L+  Y   GDI+ A  +F+
Sbjct: 144 FDSDVYVQ-------------------------------NSLVTMYSTLGDIKSASYVFR 172

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
                +  S+ +M++G+ + G    ARKLF++M +K+ +TWS +I GY K+ ++ +A+E+
Sbjct: 173 RISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIEL 232

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           +  +Q + +   + V+  V+A+CA LGAL+ G   HD++ RN + V+ +LGTALVDMYA+
Sbjct: 233 YFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYAR 292

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG +D A  VF+ +  ++  +W  +I G AMHG A+ A+E F +M++  + P  ITF  V
Sbjct: 293 CGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAV 352

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LSAC+H G+++RGL+    M++ Y I+P +EHYGC+VDLLGRAG LAEAE+ ++ MPM+P
Sbjct: 353 LSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKP 412

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRK 509
           NA +W ALLGACR H   E  ER GK L+E++P++               + ++V  +R+
Sbjct: 413 NAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQ 472

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           +MKERG+   PG ++ +++G +H+F  GD +HP++++I  M ++I+ K+++ GY+ N+  
Sbjct: 473 MMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDD 532

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
            LFDIDEEEKE+    HSEKLAIA+  + T     IR++KNLRVCEDCH+ATKLISKV++
Sbjct: 533 ALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYE 592

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R++IVRDR R+HHF+ G CSC D+W
Sbjct: 593 RELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L +C +L  L     IH H+ R     D    + L+ +      LD A +VF  ++   +
Sbjct: 22  LESCTTLSHLK---IIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNL 78

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
           F +N+ I G +     D +   + + +R  + PD +T+  ++ AC   G +D G+QA   
Sbjct: 79  FIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQ 138

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           + + +G D +V     +V +    G +  A  V   +    +   W +++    K G+V 
Sbjct: 139 IIR-HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC-LDVVSWTSMVAGYIKSGDVT 196

Query: 483 FGERL-----------GKILLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
              +L             +++    +N   D   ++  L++  G+  N
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHAN 244


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/694 (37%), Positives = 406/694 (58%), Gaps = 55/694 (7%)

Query: 14  LKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           L P +        S F +     IL  +C T  + L + HA ++K+       V+  L++
Sbjct: 7   LLPAKTPTAKTSISLFPENPKTLILE-QCKT-IRDLNEIHAHLIKTRLLLKPKVAENLLE 64

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
             A    ++ + A+ +F  + +P+   +N ++R       P   I L+ EM     +P++
Sbjct: 65  SAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDE 124

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           FT+P + K CS  +A  EG Q+HA ++K G      VK++ I MYA  G V  AR++ D+
Sbjct: 125 FTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDE 184

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELF------------------------------- 222
            S+ +V  WN++  GY K G+ E   +LF                               
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG 244

Query: 223 ----KSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
               +  ++K    N     +++  +A+ G+ + AR+LF++M+ +D + WSA+I GY++ 
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
              +EAL++F+EMQ+  I P +  +  +L++CA LGAL+ G W+H  +K+  + +   LG
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG 364

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TAL+D YAKCG ++ + +VF  M +K V +W  +I GLA +G+   A+E F+ M  + + 
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ +TF  VLSAC+HAG++D G      M + +GI+P +EHYGC+VD+LGRAG + EA +
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ 484

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
            I +MP++PNA +W  LL +C+ H  VE GE   K L+ +EP +               R
Sbjct: 485 FIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGR 544

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +D  K+R  MKE+GIK  PG S+I+++GVIHEF   D  H Q +EIY  ++ +++++K 
Sbjct: 545 WEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKS 604

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY PN+++   D +E++KE++  +HSEKLAIAFG I + PG TIR+ KNLRVC DCH+A
Sbjct: 605 AGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNA 664

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           TKL+SKVF R+I+VRDR R+HHF+ G CSCND+W
Sbjct: 665 TKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/667 (39%), Positives = 386/667 (57%), Gaps = 86/667 (12%)

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C  +  F     A+ VF ++ +PN+ +WN++ R      +P   + LY  M+ +   PN 
Sbjct: 4   CILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNS 63

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY--------------- 178
           +T+P + K+C+  +A KEG+Q+H HV+K G   D++V +S I MY               
Sbjct: 64  YTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDR 123

Query: 179 ----------------ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
                           A  G +  AR + D+    DV+ WNA+I GY++ G+ + A ELF
Sbjct: 124 SSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELF 183

Query: 223 KSTKDKN-----------------TGS----------------------YNAMISGFARF 243
           K     N                 +GS                       NA+I  +++ 
Sbjct: 184 KEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC 243

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  E A  LF  ++ KD I+W+ +I GYT    YKEAL +F EM R    P    +  +L
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303

Query: 304 AACASLGALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
            ACA LGA+D G WIH ++ +    +   + L T+L+DMY+KCG ++ A +VF  M  K 
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +  WNAMI G AMHGRA+ A ++F +M++ +++PD ITF  +LSAC+HAGM+D G     
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR 423

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M   Y I P++EHYGC++DLLG +G   EAEE+IS+M MEP+  +W +LL AC+ HG V
Sbjct: 424 SMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNV 483

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           E GE+  + L ++EP N               R ++VA++R L+ ++G+K  PG S I++
Sbjct: 484 ELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           + V+HEF  GD  HP+ +EIY ML+++   L+  G+ P++S+VL +++EE KE A ++HS
Sbjct: 544 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHS 603

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG I+T P   + ++KNLRVC +CH ATKLISK++KR+II RDR R+HHFR+G 
Sbjct: 604 EKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 663

Query: 648 CSCNDFW 654
           CSCND+W
Sbjct: 664 CSCNDYW 670



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 20/311 (6%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCH 75
           +E+  TN+   E    T++ +++    +    L +Q H+ I   G   +  +   L+  +
Sbjct: 184 KEMMKTNVRPDE---STMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFY 240

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
             S+    E A  +F  +   +V  WN ++      N     + L+ EM+     PN  T
Sbjct: 241 --SKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298

Query: 136 YPTVFKACSITEADKEGVQVHAHVVK--NGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
             ++  AC+   A   G  +H ++ K   G+     +++S I MY+  G +  A Q+ + 
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEA 249
                +  WNA+I G+   G    A ++F   +         ++  ++S  +  G  +  
Sbjct: 359 MLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLG 418

Query: 250 RKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           R +F  M    +IT     +  +ID     G +KEA E+ + M    ++P   +   +L 
Sbjct: 419 RHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMT---MEPDGVIWCSLLK 475

Query: 305 ACASLGALDQG 315
           AC   G ++ G
Sbjct: 476 ACKMHGNVELG 486


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/614 (42%), Positives = 365/614 (59%), Gaps = 49/614 (7%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           +L++  F D + +  +V   A     +   A  VFN +  P  F  NS++R     N P 
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + I  Y  M+     P++FT+P++FK+C +     EG Q+H H  K G   D +++    
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSCGVL---CEGKQLHCHSTKLGFASDAYIQ---- 113

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                                      N L++ Y  CG +  A+++F    +K+  S+  
Sbjct: 114 ---------------------------NTLMNMYSNCGCLVSARKVFDKMVNKSVVSWAT 146

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEI-TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           MI  +A++    EA KLF  M     +  W+ +I+G+ +D  Y+EAL +FNEMQ   +K 
Sbjct: 147 MIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 206

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            K  ++ +L AC  LGAL+ G W+H ++++  I VD  LGTALVDMYAKCG ++ A +VF
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           ++M  K+V TW A+I GLAM G+   A+ELF +MQ  +++PD ITF  VL+AC+HAG+++
Sbjct: 267 QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVN 326

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G+     M   YGI P +EHYGC+VD+LGRAG +AEAE++I +MPM P+  V   LL A
Sbjct: 327 EGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSA 386

Query: 475 CRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNP 520
           CR HG +   ER  + L+E++P+N              +  +   KMR+LM ER IK  P
Sbjct: 387 CRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPP 446

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G S I+V GV+HEF  GD SHPQ  EIY  L  ++ +LK  GY P+ S+VLFD+DE+EKE
Sbjct: 447 GCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKE 506

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSEKLAIAFG ++T PG  IRV+KNLRVC DCHSA K IS+V+ R+IIVRDR R+
Sbjct: 507 NELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRF 566

Query: 641 HHFRNGKCSCNDFW 654
           HHF  G CSC DFW
Sbjct: 567 HHFTKGSCSCRDFW 580



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 42/302 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHAN--------------------------SRFSNF 83
           KQ H    K G   D Y+  TL+  ++N                            ++ +
Sbjct: 95  KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 154

Query: 84  EL---ALKVFNSVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           +L   A+K+F  +    N+F WN ++   +E ++    +SL++EM     K +K T  ++
Sbjct: 155 DLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 214

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
             AC+   A + G  +H ++ K  +  DV + ++ + MYA  G +  A ++  +  + DV
Sbjct: 215 LIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDV 274

Query: 200 ICWNALIDGYLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + W ALI G   CG    A ELF     S    +  ++  +++  +  G   E    FN 
Sbjct: 275 MTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNS 334

Query: 256 MNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           M +K  I      +  ++D   + G   EA ++   M    + P  FVL  +L+AC   G
Sbjct: 335 MPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVLVGLLSACRIHG 391

Query: 311 AL 312
            L
Sbjct: 392 NL 393


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/654 (38%), Positives = 397/654 (60%), Gaps = 47/654 (7%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q ++Q HA  LK+  F   +VS  L+  +++ + ++   A  +F+ + + ++  WN++++
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +E+      I L+ E+V  +  P+ FT P V K C+     +EG Q+H   +K G   
Sbjct: 87  CYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV V+ S + MY+  G ++ AR++ D     DV+ WN+LIDGY +CG+I+ A +LF+   
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +++  S+  ++ G ++ G+ E ARKLF++M  ++ ++W+A+I+GY K G +  ALE+F +
Sbjct: 206 ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQ 265

Query: 287 MQ--------------------RDKIK-----------PRKFVLSCVLAACASLGALDQG 315
           M                      D +K           P    L  VL+A + L  L +G
Sbjct: 266 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
            WIH ++++N   +D +LGT+L++MYAKCG ++ A  VF  ++ K+V  W A+I GL +H
Sbjct: 326 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 385

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G A+ A+ LF +M +  ++P+ I F  VL+AC HAG++D G Q    M   Y I+P +EH
Sbjct: 386 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 445

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           YGC+VD+L RAG+L EA+  I +MP+ PN  +W +LLG  R HG+++ GE   + ++E+ 
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 505

Query: 496 PQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           P+   C              + V+ +R++M +RG + +PG S ++  G +HEF  GD SH
Sbjct: 506 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 565

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID-EEEKETAPKYHSEKLAIAFGFINTD 600
           PQ KEIY  + ++ EKLK  G+ P+++QVL  I+ E+EKE   + HSE+LAIAFG IN  
Sbjct: 566 PQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVK 625

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           PG  IR++KNLRVC DCHS TKL+SK++ R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 626 PGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/665 (39%), Positives = 392/665 (58%), Gaps = 50/665 (7%)

Query: 6   TTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH 65
           + T LPH     +IS    P    S   ++    T+C +  + LKQ HA +LK+G  QD 
Sbjct: 19  SLTTLPHRWFCAQISVG--PLLSGSCYCMMPNTETRC-SKQEELKQIHARMLKTGLIQDS 75

Query: 66  YVSGTLVKCHANSRFSNF-ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM 124
           Y     + C  +S  S+F   A  VF+   +P+ F+WN ++R     +EP R + LY  M
Sbjct: 76  YAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRM 135

Query: 125 VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCV 184
           +   +  N +T+P++ KACS   A +E  Q+HA + K G                     
Sbjct: 136 LCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGY-------------------- 175

Query: 185 NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG 244
                      ++DV   N+LI+ Y   G+ + A  LF      +  S+N++I G+A+ G
Sbjct: 176 -----------ENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAG 224

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           + + A  LF +M +K+ I+W+ +I GY + G +KEAL++F+EMQ   ++P    L+  L+
Sbjct: 225 KMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALS 284

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           ACA LGAL+QG WIH ++ +  I +D+VLG  L+DMYAKCG +  A +VF++++ K V  
Sbjct: 285 ACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQA 344

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W A+I G A HG   +AI  F +MQ+  ++P+ ITF  VL+AC++ G+++ G      M+
Sbjct: 345 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNME 404

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           + Y + P +EHYGC+VDLL RAG L EA+  I  MP++PNA +W ALL ACR H  +E G
Sbjct: 405 RDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 464

Query: 485 ERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           E +G+IL+ ++P                ++ D  A+ R+LMKE+G+   PG S I + G 
Sbjct: 465 EEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 524

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN-SSQVLFDIDEEEKETAPKYHSEK 589
            HEF  GD SHP++++I    K +  KL+  GY P     +L  +D++E+ET    HSEK
Sbjct: 525 THEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEK 584

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAI +G I T PG TIR++KNLRVC+DCH  TKLISK++KRDI++RDR R+HHFR+GKCS
Sbjct: 585 LAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCS 644

Query: 650 CNDFW 654
           C D+W
Sbjct: 645 CGDYW 649


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/734 (37%), Positives = 409/734 (55%), Gaps = 91/734 (12%)

Query: 8   TDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV 67
             +P    P  ++A N    + S  + + IL  KC    +HLKQ HA +L++G F D   
Sbjct: 9   ASVPISSNPTILTANN---EQKSNPSTVPILIDKCANK-KHLKQLHAHMLRTGLFFDPPS 64

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
           +  L    A S  S+ + A KVF+ + +PN++ WN+++RA     +P + + ++ +M+  
Sbjct: 65  ATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHE 124

Query: 128 DSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
             + PN +T+P V KA +   +   G  +H  V+K     D+ + +S I  Y+  G ++ 
Sbjct: 125 SQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDS 184

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-------------------- 226
           A  +     + D++ WN++I G+++ G  E A +LFK  K                    
Sbjct: 185 AYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAK 244

Query: 227 -------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                              D N    NAM+  + + G  E+AR+LF++M +KD ++W+ +
Sbjct: 245 RIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTM 304

Query: 268 IDGYTKDGYY-------------------------------KEALEVFNEMQRDK-IKPR 295
           IDGY K G Y                               KEAL +F E+Q +K  KP 
Sbjct: 305 IDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPN 364

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +  L+  LAACA LGA+D G WIH ++K+  I ++  + T+L+DMY+KCG L+ A +VF 
Sbjct: 365 EVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFY 424

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++ ++VF W+AMI GLAMHG    AI+LF KMQ  K++P+ +TF  +L AC+H+G++D 
Sbjct: 425 SVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDE 484

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G      M+ +YG+ P  +HY C+VD+LGRAG L EA E+I  MP+ P+A+VW ALLGAC
Sbjct: 485 GRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGAC 544

Query: 476 RKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPG 521
           R +G VE  E     LLE +  N               + D V+++R+ MK  G++  PG
Sbjct: 545 RIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPG 604

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KE 580
            S I+VNG+IHEF  GD SHP   EIY  L +I+ ++K  GY  + S +L  ++EE  KE
Sbjct: 605 CSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKE 664

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
            A   HSEKLAIA+G I  +P   IR++KNLRVC DCHS  KLISK++ RDI++RDR R+
Sbjct: 665 HALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRF 724

Query: 641 HHFRNGKCSCNDFW 654
           HHF  G CSC D+W
Sbjct: 725 HHFSGGNCSCMDYW 738


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/629 (39%), Positives = 388/629 (61%), Gaps = 46/629 (7%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           +C ++ + LK  HA +L++  F D + +  L+    +S  +    A++V + +  PN+F+
Sbjct: 25  ECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFI 84

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +N+++R C     P      Y + +     P+  T+P + KAC+  E    G+Q H   +
Sbjct: 85  YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAI 144

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K+G   D +V+                               N+L+  Y   GDI  A+ 
Sbjct: 145 KHGFEQDFYVQ-------------------------------NSLVHMYASVGDINAARS 173

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           +F+     +  S+  MI+G+ R G  + AR+LF+ M +++ +TWS +I GY ++  +++A
Sbjct: 174 VFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKA 233

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +E F  +Q + +   + V+  V+++CA LGAL  G   H++V RN + ++ +LGTA+VDM
Sbjct: 234 VETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDM 293

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YA+CG ++ A  VFE +  K+V  W A+I GLAMHG A+ A+  F +M ++   P  ITF
Sbjct: 294 YARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITF 353

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL+AC+HAGM++RGL+    M++ +G++P +EHYGC+VDLLGRAG L +AE+ +  MP
Sbjct: 354 TAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMP 413

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAK 506
           ++PNA +W ALLGACR H  VE GER+GKILLEM+P+                +  DV  
Sbjct: 414 VKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTV 473

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII-EKLKMEGYSP 565
           MR++MK++G++  PG S+I+++G +HEF  GD +HP++++I  + + II  K+K+ GY  
Sbjct: 474 MRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVG 533

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N+++ +FDIDEEEKE A   HSEKLAIA+G +       IR++KNLRVCEDCH+ATKLIS
Sbjct: 534 NTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLIS 593

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KVF+ ++IVRDR R+HHF+ G CSC D+W
Sbjct: 594 KVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 35/205 (17%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD--MYAKCGRLDMAWKVFEDMKM 359
           VL  C S  A D  I IH H+ R  +  D    + L+   + +    L  A +V   ++ 
Sbjct: 22  VLLECCS-NARDLKI-IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQN 79

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA----------- 408
             +F +NA+I G +     +++   + K  R  + PD IT   ++ ACA           
Sbjct: 80  PNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQT 139

Query: 409 HAGMIDRGLQALTYMQ----QMYG----IDP-----------EVEHYGCIVDLLGRAGYL 449
           H   I  G +   Y+Q     MY     I+            +V  + C++    R G  
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDA 199

Query: 450 AEAEEVISSMPMEPNAAVWEALLGA 474
             A E+   MP E N   W  ++  
Sbjct: 200 KSARELFDRMP-ERNLVTWSTMISG 223


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/654 (39%), Positives = 399/654 (61%), Gaps = 58/654 (8%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVI---LKSGHFQDHYVSGTLVKCHANSRFS 81
           PT  F     L IL T  H    +LKQ + ++   + +G   D + +  L+K   +S F 
Sbjct: 21  PT--FKPTITLSILETHLHNC-HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI 77

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             + +L++F+ +   N F+WN+++RA ++ N   + + LY  MV  +  P+ +TYP V +
Sbjct: 78  GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 137

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC++   +  G ++H HV+K G   DV+V+                              
Sbjct: 138 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQ------------------------------ 167

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR---FGRFEEARKLFNEMND 258
            N LI+ Y  CG++  A++LF  +   ++ S+N++++G+ +    G+  EA KLFNEM++
Sbjct: 168 -NTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDE 226

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD ++WSA+I GY ++G Y+EAL +F EM  + ++  + V+  VL+ACA L  +  G  I
Sbjct: 227 KDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMI 286

Query: 319 HDHVKRNSICVDAVLGTALV----DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           H  V R  I     L  AL+    DMY KCG ++ A +VF  M+ K V +WNA+I GLA+
Sbjct: 287 HGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAV 346

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G  + ++++F +M+   + P+ ITF  VL AC H G++D G      M + +GI+P V+
Sbjct: 347 NGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVK 406

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HYGC+VDLLGRAG L EAE++I SMPM P+ A W ALLGAC+KHG+ E GER+G+ L+E+
Sbjct: 407 HYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIEL 466

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +P +                 +DV ++R +MK++G+   PG S+I+ NGV+HEF  GD +
Sbjct: 467 QPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKT 526

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP + ++  ML ++ ++LKMEGY+P++++V  DIDEEEKET    HSEKLAIAFG +   
Sbjct: 527 HPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTIS 586

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           P   IR++KNLR+C DCH+A KLISK + R+I+VRDR R+H+F+ G CSC D+W
Sbjct: 587 PPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/638 (40%), Positives = 391/638 (61%), Gaps = 52/638 (8%)

Query: 36  DILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           D L + C  S++ +KQ HA ++ +G       +  L+K   +S F+    A  VF+   +
Sbjct: 5   DFLLSSC-KSFRQIKQVHARLITTGLILHPIPTNKLLK-QLSSIFAPISYAHMVFDHFPQ 62

Query: 96  PNVFVWNSVLRA-CLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGV 153
           P++F++N++++             + +  ++  +   PN++++   FK C       EG 
Sbjct: 63  PDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGE 122

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QV  H +K GL  ++ V                                NALI  Y+   
Sbjct: 123 QVRVHAIKLGLENNLFVT-------------------------------NALIGMYVNLD 151

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
            +  A+++F  + +++  S+N M+SG+AR G+ +EAR+LF+EM +KD ++W+ +I G  +
Sbjct: 152 FVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            GY+ EAL++F+ M    + P ++ L+  LAACA+L ALDQG W+H ++K+N+I ++  L
Sbjct: 212 VGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERL 271

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
              L+DMYAKCG L+ A K+F       ++V+ WNAMIGG A+HG++ +AIE+F +M+ E
Sbjct: 272 LAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE 331

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           K+ P+++TF  +L+AC+H   ++ G      M   Y + PE+EHYGC+VDLLGRAG L E
Sbjct: 332 KVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC---------- 501
           AEE+ISSM + P+ A+W ALL AC+ H + E GER+GKI+ E++P +  C          
Sbjct: 392 AEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSL 451

Query: 502 ----DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
               ++   +R+ + E G K  PG S I++NG+ H+F  GD SHPQ K++YL L ++I K
Sbjct: 452 TGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITK 511

Query: 558 LKMEGYSPNSSQVLFDIDE-EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           LK+ GY P S +VL DID+ E++ETA   HSEKLAIAFG +NT P   IR++KNLRVC D
Sbjct: 512 LKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSD 571

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH A K ISKV+ R+IIVRDR+RYHHF++G CSCND+W
Sbjct: 572 CHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/733 (37%), Positives = 412/733 (56%), Gaps = 92/733 (12%)

Query: 9   DLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVS 68
            LP H      S  N PT+   +   + ++  +C  S + LKQ H  ++++G F D Y +
Sbjct: 11  SLPRH---PNFSNPNQPTTNNERSRHISLIE-RC-VSLRQLKQTHGHMIRTGTFSDPYSA 65

Query: 69  GTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
             L    A S F++ E A KVF+ + KPN F WN+++RA     +P   I  + +MV   
Sbjct: 66  SKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSES 125

Query: 129 S-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL----------------CGDVH-- 169
              PNK+T+P + KA +   +   G  +H   VK+ +                CGD+   
Sbjct: 126 QCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSA 185

Query: 170 ------------------------------------------VKSSGIQMYACFGCVNKA 187
                                                     VK+S + M        K 
Sbjct: 186 CKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI 245

Query: 188 RQ----------ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           R           I ++    ++   NA++D Y KCG IE AK LF + ++K+  ++  M+
Sbjct: 246 RNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 305

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRK 296
            G+A    +E AR++ N M  KD + W+A+I  Y ++G   EAL VF+E+Q  K +K  +
Sbjct: 306 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 365

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
             L   L+ACA +GAL+ G WIH ++K++ I ++  + +AL+ MY+KCG L+ + +VF  
Sbjct: 366 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 425

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           ++ ++VF W+AMIGGLAMHG  ++A+++F+KMQ   ++P+ +TF  V  AC+H G++D  
Sbjct: 426 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 485

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
                 M+  YGI PE +HY CIVD+LGR+GYL +A + I +MP+ P+ +VW ALLGAC+
Sbjct: 486 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 545

Query: 477 KHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGS 522
            H  +   E     LLE+EP+N               + ++V+++RK M+  G+K  PG 
Sbjct: 546 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 605

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KET 581
           S I+++G+IHEF +GD +HP  +++Y  L +++EKLK  GY P  SQVL  I+EEE KE 
Sbjct: 606 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQ 665

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
           +   HSEKLAI +G I+T+    IRVIKNLRVC DCHS  KLIS+++ R+IIVRDR R+H
Sbjct: 666 SLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFH 725

Query: 642 HFRNGKCSCNDFW 654
           HFRNG+CSCNDFW
Sbjct: 726 HFRNGQCSCNDFW 738


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/695 (37%), Positives = 404/695 (58%), Gaps = 87/695 (12%)

Query: 47  QHLKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           Q L+  HA ++K+G H  ++ +S  L  C  +  F     A+ VF+++ +P + +WN++ 
Sbjct: 16  QSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMF 75

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R     ++P   + LY  MV +   PN +T+P + K+C+ + A KEG Q+H  V+K G  
Sbjct: 76  RGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFD 135

Query: 166 GDVHVKSSGIQMY-------------------------------ACFGCVNKARQILDDG 194
            D+++ +S I MY                               A  G +  A ++ D+ 
Sbjct: 136 LDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEI 195

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGS----- 232
              DV+ WNA I GY + G+ + A ELFK     N                 +GS     
Sbjct: 196 PVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGR 255

Query: 233 -----------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                             NA+I  +++ G  E A  LF  +++KD I+W+ +I GYT   
Sbjct: 256 QVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMN 315

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL 333
            YKEAL +F +M R   KP    +  +L+ACA LGA+D G WIH ++ +    +   + L
Sbjct: 316 LYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 375

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            T+L+DMYAKCG ++ A +VF+ M  + + +WNAMI G AMHGRA+ A ++F +M++  +
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGI 435

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD ITF  +LSAC+H+GM+D G      M + Y + P++EHYGC++DL G +G   EAE
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAE 495

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------R 499
           ++I++M MEP+  +W +LL AC+ HG VE GE   + L+++EP+N               
Sbjct: 496 KMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAE 555

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R ++VAK R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+
Sbjct: 556 RWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 615

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             G+ P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH 
Sbjct: 616 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHE 675

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ATKLISK++KR+II RDR R+HHFR+G+CSCND+W
Sbjct: 676 ATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/628 (41%), Positives = 388/628 (61%), Gaps = 50/628 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +S   +KQ H+++L+ G   +++    +    + S+  +   ALK+F ++  P+ F++N+
Sbjct: 13  SSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNT 72

Query: 104 VLRACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           + +A    ++ P   +  YS M+     PN FT+P++ +AC + E   E  Q+HAHV+K 
Sbjct: 73  LFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEE---EAKQLHAHVLKF 129

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G  GD +  ++ I +Y  FG ++ AR++    S  +V+ W +L+ GY + G ++ A  +F
Sbjct: 130 GFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVF 189

Query: 223 KSTK-DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           +     KN+ S+NAMI+ F +  RF EA  LF  M                         
Sbjct: 190 ELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRM------------------------- 224

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            V  +M+ D     +FV + +L+AC  +GAL+QG+WIH +V++  I +D+ L T ++DMY
Sbjct: 225 RVEKKMELD-----RFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMY 279

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITF 400
            KCG LD A+ VF  +K+K V +WN MIGG AMHG+ +DAI LF +M+ E M  PD ITF
Sbjct: 280 CKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITF 339

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL+ACAH+G+++ G     YM  ++GIDP  EHYGC+VDLL RAG L EA++VI  MP
Sbjct: 340 VNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP 399

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
           M P+AAV  ALLGACR HG +E GE +G  ++E++P+N               + + VA 
Sbjct: 400 MSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAG 459

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +RKLM +RG+K  PG SMI++ GV++EF  G   HP  + IY  + +++E +++ G+ P+
Sbjct: 460 VRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPD 519

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           +  VL D+ EEE+E    YHSEKLAIA+G + T  G T+RV KNLRVC+DCH A+K+ISK
Sbjct: 520 TDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISK 579

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V+  DII+RDR R+HHF NG+CSC D+W
Sbjct: 580 VYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/737 (37%), Positives = 418/737 (56%), Gaps = 92/737 (12%)

Query: 5   VTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQD 64
           V ++  P H  P   S+++ P         L +L+  C T  Q L+  HA ++K G    
Sbjct: 10  VPSSSYPFHFLP---SSSDPPYDSIRNHPSLSLLHN-CKT-LQSLRIIHAQMIKIGLHNT 64

Query: 65  HYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           +Y    L++ C  +  F     A+ VF ++ +PN+ +WN++ R     ++P   + LY  
Sbjct: 65  NYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVC 124

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY----- 178
           M+ +   PN +T+P V K+C+ ++A KEG Q+H HV+K G   D++V +S I MY     
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 179 --------------------------ACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
                                     A  G +  A+++ D+    DV+ WNA+I GY + 
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 213 GDIEGAKELFKSTKDKN-----------------TGS----------------------Y 233
           G+ + A ELFK     N                 +GS                       
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+I  +++ G  E A  LF  +  KD I+W+ +I GYT    YKEAL +F EM R    
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAW 351
           P    +  +L ACA LGA+D G WIH ++ +    +   + L T+L+DMYAKCG ++ A 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VF  +  K + +WNAMI G AMHGRAD + +LF +M++  ++PD ITF  +LSAC+H+G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           M+D G      M Q Y + P++EHYGC++DLLG +G   EAEE+I+ M MEP+  +W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIK 517
           L AC+ HG VE GE   + L+++EP+N               R ++VAK R L+ ++G+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+  G+ P++S+VL +++EE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
            KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH ATKLISK++KR+II RDR
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDR 724

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHFR+G CSCND+W
Sbjct: 725 TRFHHFRDGVCSCNDYW 741


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/637 (40%), Positives = 390/637 (61%), Gaps = 58/637 (9%)

Query: 41  KCHTSWQHLKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
           KC +  Q L+Q H+ I++ G    +H +   +  C   S       ALK+F+S+ +P+ F
Sbjct: 31  KCQSMSQ-LRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAF 89

Query: 100 VWNSVLRACLEHNEPW---RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           ++N++++  L H++      ++ LYS M+     PN FT+P++  AC   +    G+Q+H
Sbjct: 90  LYNTIIKGFL-HSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQ---HGMQIH 145

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           AH+ K G        +S I MY  F  + +AR++       D + W +LI GY K G I+
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A  +F+    KN+ S+NAM++ + +  RF EA  LF+ M  ++    + ++D       
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAEN----NNVLD------- 254

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
                              KFV + +L+AC  LGALDQG WIH+++KRN I +D+ L TA
Sbjct: 255 -------------------KFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTA 295

Query: 337 LVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           +VDMY KCG L+ A +VF  + +  + + +WN MIGGLAMHG  + AI+LF +M+R+++ 
Sbjct: 296 IVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA 355

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD ITF  +L+ACAH+G+++ G    +YM ++YGI+P +EH+GC+VDLLGRAG + EA +
Sbjct: 356 PDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARK 415

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           +I  MP+ P+  V   LLGAC+KH  +E GE +G+ ++E+EP N               +
Sbjct: 416 LIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGK 475

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +D AK+RKLM +RG+K  PG SMI++ G +HEF  G+ +HPQ KE++  + +++E LK 
Sbjct: 476 WEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKS 535

Query: 561 EGYSPNSSQVL--FDIDEEEKETAP-KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
            GY  +++ VL   D DEEE    P  YHSEKLAIAFG   T PG T+R++KNLR+CEDC
Sbjct: 536 VGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDC 595

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H A KLIS VF R+IIVRDR R+H F+ G+CSC D+W
Sbjct: 596 HHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/697 (38%), Positives = 401/697 (57%), Gaps = 87/697 (12%)

Query: 45  SWQHLKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           + Q L+  HA ++K+G H  ++ +S  L  C  +  F     A+ VF ++ +PN+ +WN+
Sbjct: 14  TLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNT 73

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + R     ++P   I LY  M+ +   PN +T+P + K+C+  +  KEG Q+H HV+K G
Sbjct: 74  MFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLG 133

Query: 164 LCGDVHVKSSGIQMY-------------------------------ACFGCVNKARQILD 192
              D++V +S I MY                               A  G +  A+++ D
Sbjct: 134 YELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFD 193

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGS--- 232
           +    DV+ WNA+I GY   G+ + A +LFK     N                 +GS   
Sbjct: 194 EIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQL 253

Query: 233 -------------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                               NA+I  +++ G  E A  LF  +++KD I+W+ +I GYT 
Sbjct: 254 GRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTH 313

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDA 331
              YKEAL +F EM R    P    +  +L ACA LGA+D G WIH ++ +    +   +
Sbjct: 314 LNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNAS 373

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            L T+L+DMYAKCG ++ A +VF  M  + +   NAMI G AMHGRA+ A ++F +M++ 
Sbjct: 374 SLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + PD ITF  +LSAC+H+GM+D G +    M Q Y I P++EHYGC++DLLG  G   E
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKE 493

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           AEE+I++M MEP+  +W +LL AC+ HG VE GE   + L+++EP+N             
Sbjct: 494 AEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYAT 553

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R ++VA +R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   
Sbjct: 554 AGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVL 613

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+  G+ P++S+VL +++EE K+ A ++HSEKLAIAFG I+T PG  + ++KNLRVC +C
Sbjct: 614 LEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNC 673

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H ATKLISK++KR+II RDR R+HHFR+G CSCND+W
Sbjct: 674 HEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 18/310 (5%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+  TN+   E +  T++         S Q  +Q H+ I   G   +  +   L+  + 
Sbjct: 224 KEMMKTNVKPDESTMVTVVSACAQS--GSIQLGRQVHSWIDDHGLGSNLKIVNALIDLY- 280

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S+    E A  +F  +   +V  WN+++      N     + L+ EM+     PN  T 
Sbjct: 281 -SKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTM 339

Query: 137 PTVFKACSITEADKEGVQVHAHVVK--NGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
            ++  AC+   A   G  +H ++ K   G+     +++S I MYA  G +  A Q+ +  
Sbjct: 340 LSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEAR 250
               +   NA+I G+   G    A ++F    K+  + +  ++  ++S  +  G  +  R
Sbjct: 400 HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 251 KLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           ++F  M    +IT     +  +ID     G +KEA E+ N M    ++P   +   +L A
Sbjct: 460 RIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMT---MEPDGVIWCSLLKA 516

Query: 306 CASLGALDQG 315
           C   G ++ G
Sbjct: 517 CKMHGNVELG 526


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/689 (37%), Positives = 401/689 (58%), Gaps = 57/689 (8%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           IS T+I  ++F +     IL  +C T  + L+Q HA +LK+    D  ++  +++  A  
Sbjct: 11  ISLTSI--TQFPENPKSLILQ-QCKTP-KDLQQVHAHLLKTRRLLDPIITEAVLESAALL 66

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
                + AL +FN + KP    +N ++R       P   + L+ +M     + +KFT+ +
Sbjct: 67  LPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSS 126

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KACS  +A +EG QVHA ++K+G   +  V+++ IQMYA  G +  AR + D   +  
Sbjct: 127 VLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERS 186

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKD------------------------------- 227
           ++ WN+++ GY K G  +   +LF+   +                               
Sbjct: 187 IVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGE 246

Query: 228 --------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                   +N     ++I  +A+ G+ + ARKLF+EM+ +D + WSA+I GY +    KE
Sbjct: 247 YIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKE 306

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL +F+EMQ+  + P +  +  VL +CA LGA + G W+H ++K+  + +   LGT L+D
Sbjct: 307 ALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLID 366

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            YAKCG +D + +VF++M  K VFTW A+I GLA +G    A+E F  M    ++P+ +T
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVT 426

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VLSAC+HA ++D+G      M++ + I+P +EHYGC+VD+LGRAG+L EA + I +M
Sbjct: 427 FIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM 486

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P  PNA VW  LL +CR H  +E  E+  + +  +EP +               R +D  
Sbjct: 487 PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAI 546

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R L+KE+ IK  PG S+I+++GV+HEF + DG H   KEI+  L K+++++K  GY P
Sbjct: 547 RVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVP 606

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N+     + +EE KET+  +HSEKLAIA+G I T P  TIR+ KNLR+C DCH+ATK IS
Sbjct: 607 NTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFIS 666

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +VF+R IIVRDR R+HHF++G CSCND+W
Sbjct: 667 QVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/691 (38%), Positives = 392/691 (56%), Gaps = 88/691 (12%)

Query: 52  AHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            HA ++K+G H  ++ +S  L  C  +  F     A+ VF +  +PN+ +WN++LR    
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
            ++    + +Y  MV     PN +T+P + K+C+ ++  +EG Q+HA V+K G   D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVIC----------------------------- 201
            +S I MYA  G +  AR++ D  S+ DV+                              
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 202 --WNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGS---------- 232
             WNA+I GY++    E A ELFK     N                 +GS          
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 233 -------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                         NA I  +++ G  E A  LF  ++ KD ++W+ +I GYT    YKE
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN--SICVDAVLGTAL 337
           AL +F EM R    P    +  VL ACA LGA+D G WIH ++ +    +   + L T+L
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMYAKCG ++ A +VF  M  K + +WNAMI G AMHGRA+ A +LF +M++  + PD 
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           IT   +LSAC+H+G++D G      + Q Y I P++EHYGC++DLLG AG   EAEE+I 
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
            MPMEP+  +W +LL AC+ HG +E  E   + L+E+EP+N               R +D
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWED 540

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           VA++R+++  +G+K  PG S I+++ V+HEF  GD  HPQ +EIY ML+++   L+  G+
Sbjct: 541 VARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGF 600

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
            P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + V+KNLRVC +CH ATKL
Sbjct: 601 VPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKL 660

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ISK++KR+I+ RDR R+HHFR+G CSC D+W
Sbjct: 661 ISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/693 (38%), Positives = 402/693 (58%), Gaps = 87/693 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           L+  HA ++K+G    +Y    L++ C  +  F     A+ VF ++ +PN+ +WN++ R 
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
               ++P   + LY  M+ +   PN +T+P + K+C+ ++A +EG Q+H HV+K G   D
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSK------------------------------- 196
           ++V +S I MY   G +  AR++ D  S                                
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT-------------------------- 230
            DV+ WNA+I GY + G+ + A ELFK     N                           
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 231 ---------GS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                    GS     NA+I  + + G  E A  LF  ++ KD I+W+ +I GYT    Y
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVLGT 335
           KEAL +F EM R    P    +  +L ACA LGA++ G WIH ++ +    +   +   T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           +L+DMYAKCG ++ A +VF+ +  + + +WNAMI G AMHGRA+ A ++F +M++ ++ P
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D ITF  +LSAC+H+GM+D G      M++ Y I P++EHYGC++DLLG +G   EAEE+
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I++M MEP+  +W +LL AC+ HG VE GE   + L+++EP+N               R 
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRW 542

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++VAK+R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+  
Sbjct: 543 NEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEA 602

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           G+ P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH AT
Sbjct: 603 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 662

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLISK++KR+II RDR R+HHFR+G CSCND+W
Sbjct: 663 KLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/650 (40%), Positives = 407/650 (62%), Gaps = 39/650 (6%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P       ++   +NT C T  + L Q HAV +KSG  +D   +  +++  A S   + +
Sbjct: 10  PGGNSPASSLFPQINT-CRTI-RDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRD 67

Query: 85  L--ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI--SLYSEMVGVD-SKPNKFTYPTV 139
           L  A K+FN + + N F WN+++R   E +E   +I  +L+ EM+  +  +PN+FT+P+V
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            KAC+ T   ++G Q+H   +K G  GD  V S+ ++MY   G +               
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMK-------------- 173

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
              +A +  Y    + E    + +  +D     +N MI G+ R G  + AR LF++M  +
Sbjct: 174 ---DACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQR 230

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWI 318
             ++W+ +I GY+++G++K+A+EVF EM++ + I+P    L  VL A + LG+L+ G W+
Sbjct: 231 SVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWL 290

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H + + + I +D VLG+AL+DMY+KCG ++ A  VFE +  + V TW+AMI G A+HG+A
Sbjct: 291 HLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQA 350

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            DAI+ F KM++  +RP  + +  +L+AC+HAG+++ G +  + M  + G++P +EHYGC
Sbjct: 351 GDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGC 410

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGR G L EAEE I +MP++P+  +W+ALLGACR H  VE G+R+  IL++M P +
Sbjct: 411 MVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHD 470

Query: 499 RRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                             +V++MR  MKE  I+ +PG S ID++GV+HEF   D SHP+ 
Sbjct: 471 SGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRA 530

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           KEI  ML +I +KL++ GY P ++QVL +++EE+KE A  YHSEK+A AFG I+T PG  
Sbjct: 531 KEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKP 590

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IR++KNLR+CEDCHS+ KLISKV+KR I VRDR R+HHF++G CSC D+W
Sbjct: 591 IRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/726 (38%), Positives = 404/726 (55%), Gaps = 91/726 (12%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P  I+  N     F+    L +++    T  + LKQ HA +L++G F D + +  L+   
Sbjct: 22  PNSITLNN--DRYFANHPTLSLIDQCSET--KQLKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKF 134
           A S F + + A +VF+ +  PN++ WN+++RA    + P + + ++  M+      P+KF
Sbjct: 78  ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVK----------NGL------CG------------ 166
           T+P + KA S  E    G   H  V+K          N L      CG            
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 167 ---DVHVKSSGIQMYACFGCVNKARQILDD--------------------GSKSD----- 198
              DV   +S I  +   GC  +A ++  +                      KSD     
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 199 --------------VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG 244
                         +   NA++D Y KCG +E AK LF    +K+  S+  M+ G+A+ G
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVLSCVL 303
            ++ A+ +F+ M ++D   W+A+I  Y + G  KEALE+F+E+Q  K  KP +  L   L
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           +ACA LGA+D G WIH ++K+  + ++  L T+L+DMY KCG L  A  VF  ++ K+VF
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            W+AMI GLAMHG   DAI LF KMQ +K++P+ +TF  +L AC+H G+++ G      M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           + +YG+ P V+HY C+VD+LGRAG L EA E+I  MPM P A+VW ALLGAC  H  V  
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVL 557

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E+    L+E+EP N               + D V+ +RKLM++ G+K  PG S I+V+G
Sbjct: 558 AEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDG 617

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETAPKYHSE 588
           ++HEF  GD SHP  K+IY  L +I+ +L+  GY PN S +L  ++EE+ KE A   HSE
Sbjct: 618 IVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSE 677

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLAIAFG I+T     IR++KNLRVC DCHS  KL+SK++ R+I++RDR R+HHFR G C
Sbjct: 678 KLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHC 737

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 738 SCMDYW 743


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/648 (40%), Positives = 375/648 (57%), Gaps = 63/648 (9%)

Query: 37  ILNTKCH---------TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           ILN   H          S +HLK  HA +L+ G  +D Y+   +++   N  F N   + 
Sbjct: 5   ILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFN--FGNTNYSH 62

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           ++F+   +PN+F++N+++   + ++     I +Y  M      P+ FT+P + KAC+   
Sbjct: 63  RIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLL 122

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             K G+++H  VVK G   D  V +S + +Y                             
Sbjct: 123 DSKLGIKLHGLVVKAGCESDAFVNTSLVSLYG---------------------------- 154

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGR-------FEEARKLFNEMNDKD 260
              KCG I+ A ++F    +KN  ++ A+ISG+   G+       F  A  +F+ M +KD
Sbjct: 155 ---KCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKD 211

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++WS++I GY  +G  KEAL++F +M  +  +P  + +  VL ACA LGAL+ G W  +
Sbjct: 212 IVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASN 271

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            + RN    + VLGTAL+DMYAKCGR+D AW+VF  M+ K++  WNA I GLAM G    
Sbjct: 272 LMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKA 331

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A  LF +M++  + PD  TF  +L AC HAG++D G Q    M++++ + PE+EHYGC+V
Sbjct: 332 AFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMV 391

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRAG+L EA +++ SMPME NA VW ALLG CR H + +  E + K L+ +EP N  
Sbjct: 392 DLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSG 451

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                        + +D AK+R +M ERGIK  PG S I+V+GV+HEF  GD SHP  ++
Sbjct: 452 NYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEK 511

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           IY  L ++++ LK  GY P +  VLFDI+EEEKE     HSEKLAIAFG I+T P   IR
Sbjct: 512 IYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIR 571

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V+KNLRVC DCH A K IS+   R+IIVRD  R+H F +G CSC D+W
Sbjct: 572 VVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/650 (40%), Positives = 380/650 (58%), Gaps = 55/650 (8%)

Query: 58  KSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV 117
           + G   D+Y+   +++C  +  FS+      +F+ + +PN+F+WN+++R  + ++     
Sbjct: 39  RFGLCHDNYLLNMILRCSFD--FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDA 96

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           I  Y  M      PN FT+P V KAC+     + GV++H  VVK G   DV VK+S + +
Sbjct: 97  IEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCL 156

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-------------- 223
           YA  G +  A ++ DD    +V+ W A+I GY+  G    A ++F+              
Sbjct: 157 YAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTI 216

Query: 224 --------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMND 258
                      D N+G +                  +++  +A+ G  E+AR +F+ M +
Sbjct: 217 VRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD ++W A+I GY  +G  KEA+++F +MQR+ +KP  + +  VL+ACA LGAL+ G W+
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
              V RN    + VLGTAL+D+YAKCG +  AW+VF+ MK K+   WNA+I GLAM+G  
Sbjct: 337 SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
             +  LF ++++  ++PD  TF  +L  C HAG++D G +    M + + + P +EHYGC
Sbjct: 397 KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGRAG L EA ++I +MPME NA VW ALLGACR H + +  E   K L+E+EP N
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWN 516

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + D+ AK+R  M E+ I+  PG S I+V+G++HEF  GD  HP  
Sbjct: 517 SGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLS 576

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           ++IY  L ++ +K+K+ GY P +  VLFDI+EEEKE     HSEKLAIAFG I+  P A 
Sbjct: 577 EKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAV 636

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV+KNLRVC DCH A KLIS +  R+I VRD  R+H FR G CSCND+W
Sbjct: 637 IRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/658 (39%), Positives = 381/658 (57%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  I+  G   D  V   L   +  ++  + E A +VF+ + K +V  WN+++    
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMY--TKCGSLENARQVFDRMPKRDVVSWNAIIAGYS 197

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ +P+  ++L+SEM     KPN  T  +V   C+   A ++G Q+H + +++G+  DV 
Sbjct: 198 QNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVL 257

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------LKCGDIEG 217
           V +  + MYA  G VN A ++ +     DV  WNA+I GY                 + G
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317

Query: 218 AK--------------ELFKSTKDKNTGSY-------------NAMISGFARFGRFEEAR 250
            K               LF   + +    Y             NA+++ +A+ G    A 
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           KLF  M  K+ + W+AII GY++ G+  EAL +F EMQ   IKP  F +  VL ACA   
Sbjct: 378 KLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFL 437

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL+QG  IH +  R+    + V+GT LVD+YAKCG ++ A K+FE M  ++V +W  MI 
Sbjct: 438 ALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMIL 497

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
              +HG  +DA+ LF KMQ    + D I F  +L+AC+HAG++D+GLQ    M+  YG+ 
Sbjct: 498 AYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLA 557

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHY C+VDLLGRAG+L EA  +I +M +EP+A VW ALLGACR H  +E GE+  K 
Sbjct: 558 PKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKH 617

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L E++P N              +R +DVAK+RK+MKE+G+K  PG S++ V+  +  F  
Sbjct: 618 LFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLV 677

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD +HPQ ++IY ML+ + E+++  GY PN++  L D++EE KE     HSEKLAI+FG 
Sbjct: 678 GDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGI 737

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           INT PG  IR++KNLRVC DCH+ATK ISK+  R+IIVRD  R+HH +NG CSC D+W
Sbjct: 738 INTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 212/450 (47%), Gaps = 44/450 (9%)

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           + N  VW   +   +++    + + LY +M      P+K  + +V KAC      + G +
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH  ++  G   DV V ++   MY   G +  ARQ+ D   K DV+ WNA+I GY + G 
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 215 IEGAKELF---------------------------------------KSTKDKNTGSYNA 235
              A  LF                                       +S  + +    N 
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG 261

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +++ +A+ G    A KLF  M  +D  +W+AII GY+ +  + EAL  FN MQ   IKP 
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
              +  VL ACA L AL+QG  IH +  R+    + V+G ALV+MYAKCG ++ A+K+FE
Sbjct: 322 SITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M  K V  WNA+I G + HG   +A+ LF +MQ + ++PD      VL ACAH   +++
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ 441

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G Q   Y  +  G +  V     +VD+  + G +  A+++   MP E +   W  ++ A 
Sbjct: 442 GKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAY 499

Query: 476 RKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
             HG    GE    +  +M+    + D +A
Sbjct: 500 GIHGH---GEDALALFSKMQETGTKLDHIA 526



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 15/284 (5%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T++ +L    H  + +  +Q H   ++SG   +  V   LV  +A  +  N   A K+F 
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYA--KCGNVNSAYKLFE 381

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + K NV  WN+++    +H  P   ++L+ EM     KP+ F   +V  AC+   A ++
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ 441

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G Q+H + +++G   +V V +  + +YA  G VN A+++ +   + DV+ W  +I  Y  
Sbjct: 442 GKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGI 501

Query: 212 CGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT---- 263
            G  E A  LF   ++  T     ++ A+++  +  G  ++  + F  M     +     
Sbjct: 502 HGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLE 561

Query: 264 -WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            ++ ++D   + G+  EA  +   M    ++P   V   +L AC
Sbjct: 562 HYACLVDLLGRAGHLDEANGIIKNM---SLEPDANVWGALLGAC 602



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 37/261 (14%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCH-TSWQHLKQAHAVILKSGHFQDHYVSGT-LVKCH 75
           E+ A  I    F+   I+ +L    H  + +  KQ H   ++SG F+ + V GT LV  +
Sbjct: 413 EMQAQGIKPDSFA---IVSVLPACAHFLALEQGKQIHGYTIRSG-FESNVVVGTGLVDIY 468

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A  +  N   A K+F  + + +V  W +++ A   H      ++L+S+M    +K +   
Sbjct: 469 A--KCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIA 526

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS-----SGIQMYACF-------GC 183
           +  +  ACS           HA +V  GL     +KS       ++ YAC        G 
Sbjct: 527 FTAILTACS-----------HAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGH 575

Query: 184 VNKARQILDDGS-KSDVICWNALIDGYLKCGDIE----GAKELFKSTKDKNTGSYNAMIS 238
           +++A  I+ + S + D   W AL+       +IE     AK LF+   D N G Y  + +
Sbjct: 576 LDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPD-NAGYYVLLSN 634

Query: 239 GFARFGRFEEARKLFNEMNDK 259
            +A   R+E+  KL   M +K
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEK 655


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/695 (37%), Positives = 402/695 (57%), Gaps = 87/695 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           Q L+  HA ++K+G    +Y    L++ C  +  F     A+ VF ++ +PN+ +WN++ 
Sbjct: 16  QSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 75

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R     ++P   + LY  M+ +   PN +T+P + K+C+ ++A +EG Q+H HV+K G  
Sbjct: 76  RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 135

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSK----------------------------- 196
            D++V +S I MY   G +  AR++ D  S                              
Sbjct: 136 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 195

Query: 197 --SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT------------------------ 230
              DV+ WNA+I GY + G+ + A ELFK     N                         
Sbjct: 196 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 255

Query: 231 -----------GS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                      GS     NA+I  + + G  E A  LF  ++ KD I+W+ +I GYT   
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL 333
            YKEAL +F EM R    P    +  +L ACA LGA++ G WIH ++ +    +   +  
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            T+L+DMYAKCG ++ A +VF+ +  + + +WNAMI G AMHGRA+ A ++F +M++ ++
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD ITF  +LSAC+H+GM+D G      M++ Y I P++EHYGC++DLLG +G   EAE
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E+I++M MEP+  +W +LL AC+ +  VE GE   + L+++EP+N               
Sbjct: 496 EMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 555

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R ++VAK+R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+
Sbjct: 556 RWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 615

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             G+ P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH 
Sbjct: 616 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHE 675

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ATKLISK++KR+II RDR R+HHFR+G CSCND+W
Sbjct: 676 ATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/693 (38%), Positives = 398/693 (57%), Gaps = 87/693 (12%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS-RFSNFELALKVFNSVHKPNVFVWNS 103
           + Q L+  HA ++K+G    +Y    L++    S  F     A+ VF+S+ +PN+ +WN+
Sbjct: 14  TLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNT 73

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + R     ++P   + LY  M+ +   PN +T+P + KAC+ ++A +EG Q+H HV+K G
Sbjct: 74  MFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLG 133

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSK--------------------------- 196
              D++V +S I MY   G    AR++ D  S                            
Sbjct: 134 CDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFD 193

Query: 197 ----SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---------------------- 230
                DV+ WNALI GY + G+ + A ELFK     N                       
Sbjct: 194 EIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIEL 253

Query: 231 -------------GS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                        GS     NA+I  + + G  E A  LF  ++ KD I+W+ +I GYT 
Sbjct: 254 GRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTH 313

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDA 331
              YKEAL +F EM R    P +  +  +L ACA LGA+D G WIH ++ +    +   +
Sbjct: 314 MNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPS 373

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            L T+L+DMYAKCG ++ A +VF+ M  + + +WNAMI G AMHGRA+ A ++F +M+++
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKD 433

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + PD ITF  +LSAC+H+GM+D G      M + Y I P++EHYGC++DLLG +G   E
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKE 493

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           AEE+I+SM M+P+  +W +LL AC+ HG VE GE   + L+++EP+N             
Sbjct: 494 AEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYAT 553

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R ++VAK R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   
Sbjct: 554 AGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVL 613

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+  G+ P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +C
Sbjct: 614 LEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNC 673

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           H ATKLISK++KR+II RDR R+HHF +G CSC
Sbjct: 674 HEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/667 (39%), Positives = 385/667 (57%), Gaps = 56/667 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV--W 101
           T  ++L Q HA ++KSG           +   A +  +    A+ +F    +P +    +
Sbjct: 27  TDPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCY 86

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           N ++RA L    P   + L+ EM+ V S  P++ T     K+CS       G  + A+ V
Sbjct: 87  NVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAV 146

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K GL  D  V SS I MYA    V  A+ + D   ++ V+ WNA+I  Y+K G+     E
Sbjct: 147 KRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206

Query: 221 LFKSTKD---------------------------------------KNTGSYNAMISGFA 241
           +FK   +                                       +N     A+I  +A
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA 266

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G   +AR+LF+ M  +D + WSA+I GYT+    +EAL +F+EMQ  +++P    +  
Sbjct: 267 KCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVS 326

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           VL+ACA LGAL+ G W+H +++R  + +  +LGTALVD YAKCG +D A + FE M +K 
Sbjct: 327 VLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKN 386

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
            +TW A+I G+A +GR  +A+ELF  M++  + P  +TF  VL AC+H+ +++ G +   
Sbjct: 387 SWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFD 446

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M Q YGI P  EHYGC+VDLLGRAG + EA + I +MP+EPNA +W ALL +C  H  V
Sbjct: 447 SMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNV 506

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           E GE   K ++ + P +               +  + A +RK MK+RGI+  PG S+I++
Sbjct: 507 EIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIEL 566

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           +GV+ EF   D  HPQ+KEIY  ++++I+++KM GY PN++ V  ++DE EKE +  +HS
Sbjct: 567 DGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHS 626

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG +  DPGATIR+ KNLRVC DCHSATKLISKV+ R+I+VRDR R+HHF++G 
Sbjct: 627 EKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGT 686

Query: 648 CSCNDFW 654
           CSCND+W
Sbjct: 687 CSCNDYW 693


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/674 (39%), Positives = 387/674 (57%), Gaps = 86/674 (12%)

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
           H  ++ +S  L  C     F     A+ VF S+ +PN   WN+++R     ++P   ++L
Sbjct: 6   HNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNL 65

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y  M+ +   PN +T+P +FK+C+ ++A +EG Q+HA ++K GL  D+HV +S I MYA 
Sbjct: 66  YVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQ 125

Query: 181 FGCVNKARQILDDGSK-------------------------------SDVICWNALIDGY 209
            G V  A ++ D  S                                 DV+ WNA+I GY
Sbjct: 126 NGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGY 185

Query: 210 LKCGDIEGAKELFKST------KDKNT-----------------------------GS-- 232
            + G  + A ELF          D++T                             GS  
Sbjct: 186 AEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNL 245

Query: 233 --YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
              NA+I  +++ G  E A  LF  +  KD I+W+ +I GY    ++KEAL VF EM + 
Sbjct: 246 KLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKL 305

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLD 348
              P    +  +L ACA LGA+D G WIH ++  K   I  +  L T+L+DMYAKCG ++
Sbjct: 306 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIE 365

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A +VF+ +  K + + NAMI G AMHGRAD A +L  +M+++ + PD ITF  +LSAC+
Sbjct: 366 AANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACS 425

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           HAG+ D G +    M   Y I+P++EHYGC++DLLGR+G   EAEE+I+SM MEP+  +W
Sbjct: 426 HAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIW 485

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
            +LL AC+ H  +E GE + + L+++EP+N               R DDVA++R L+ ++
Sbjct: 486 GSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDK 545

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  PG S I+++ ++HEF  GD  HPQ KEIY ML++I   L   G+  ++S+VL ++
Sbjct: 546 GLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEM 605

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           +EE KE A  YHSEKLAIAFG I+T PG  +R++KNLRVC +CH ATKLISK++KR+II 
Sbjct: 606 EEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIA 665

Query: 635 RDRVRYHHFRNGKC 648
           RDR R+HHF++G C
Sbjct: 666 RDRSRFHHFKDGMC 679



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 17/288 (5%)

Query: 31  QKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           + T+  +L+T  H+    L +Q H+ I   G   +  +   L+  +  S+    E A  +
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLY--SKCGEMERAHGL 267

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F  +   +V  WN+++      N     + ++ EM+ +   PN  T  ++  AC+   A 
Sbjct: 268 FEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAI 327

Query: 150 KEGVQVHAHVVKN--GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             G  +H ++ K   G+  +  +++S I MYA  G +  A Q+ D      +   NA+I 
Sbjct: 328 DIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIF 387

Query: 208 GYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
           G+   G  + A +L    K    + +  ++  ++S  +  G  +  RK+F  M     I 
Sbjct: 388 GFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIE 447

Query: 264 -----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
                +  +ID   + G +KEA E+ N M    ++P   +   +L AC
Sbjct: 448 PKLEHYGCMIDLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKAC 492


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/648 (41%), Positives = 382/648 (58%), Gaps = 51/648 (7%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           N  T+  S   IL + N  C T  +HLKQ HA I+   H    +    L    A S F  
Sbjct: 59  NPLTNPPSNPQILSLFN-PCKT-LRHLKQVHAQIIT--HHNSPFQLSALASLSALSPFPT 114

Query: 83  F-ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           F   A  +F+ +  P   ++NS++RA      P   + LY  M+    KP+  TYP V K
Sbjct: 115 FLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIK 174

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+ +     G+ VH HVVK+G   D ++ SS I +YA             +G       
Sbjct: 175 ACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYA-------------NGK------ 215

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
                       D+  AK+LF     ++  S+NAMI G+ +      AR +F+ M  +D 
Sbjct: 216 ------------DLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDV 263

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           I+W+ +I+GY   G   EAL +F++M+   +KP +  +  +L+ACA LGALD+G+ +H +
Sbjct: 264 ISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 323

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           +  N I V++++GTALVDMYAKCG++ +A +VF  M+ K+V  WN +I G+A+HG   +A
Sbjct: 324 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEA 383

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
            +LF +M+   + P+ ITF  +LSAC+HAGM+D G + L  M   YGI+P+VEHYGC++D
Sbjct: 384 QQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 443

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP----- 496
           LL RAG+L EA E+I +MPMEPN +   ALLG CR HG  E GE +GK L+ ++P     
Sbjct: 444 LLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGR 503

Query: 497 ---------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                      ++ DD  K+R LMK  GI   PG S+I++ G++H F  GD SHP+  +I
Sbjct: 504 YILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKI 563

Query: 548 YLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           Y  L +I  +LK   GYS ++  VL D++EE+KE A   HSEKLAIA+G ++ D    IR
Sbjct: 564 YEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIR 623

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLRVC DCH   KLISKV+ R+IIVRDR R+HHF +G+CSC DFW
Sbjct: 624 IVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 383/667 (57%), Gaps = 86/667 (12%)

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C  +  F  F  A+ VF ++ +PN  +WN++LR     ++P   + LY  M+ +   PN 
Sbjct: 7   CVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNS 66

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA-------------- 179
           +T+P + K+C+ ++A +EG Q+H HV+K G   D++V +S I MYA              
Sbjct: 67  YTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDR 126

Query: 180 -----------------CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
                              G +  A+++ D+    DV+ WNA+I GY + G  + A ELF
Sbjct: 127 SSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELF 186

Query: 223 KSTKDKNT-----------------------------------GS----YNAMISGFARF 243
           K     N                                    GS     NA+I  +++ 
Sbjct: 187 KEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC 246

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+ E A  LF  ++ KD ++W+ +I GYT    YKEAL +F EM R    P    +  +L
Sbjct: 247 GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306

Query: 304 AACASLGALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
            ACA LGA+D G WIH ++  K   +     L T+L+DMYAKCG ++ A +VF  M  K 
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           + +WNAMI G AMHGRA+   +LF +M++  + PD ITF  +LSAC+H+G +D G     
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK 426

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M Q Y I P++EHYGC++DLLG +G   EA+E+I +MPMEP+  +W +LL ACR+HG +
Sbjct: 427 SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNL 486

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           E  E   + L+++EP+N                 D+VAK+R L+  +G+K  PG S I++
Sbjct: 487 ELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEI 546

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           +  +HEF  GD  HP+ +EIY ML+++   L+  G+ P++S+VL +++EE KE A ++HS
Sbjct: 547 DSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 606

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG I+T PG  + ++KNLRVC +CH ATKL+SK++KR+II RDR R+HHFR+G 
Sbjct: 607 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGV 666

Query: 648 CSCNDFW 654
           CSCNDFW
Sbjct: 667 CSCNDFW 673



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 147/351 (41%), Gaps = 25/351 (7%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+  TN+   E +  T+L         S +  +Q H+ I   G   +  +   L+  + 
Sbjct: 187 KEMMKTNVRPDEGTMVTVLSACAQS--RSVELGRQVHSWIDDHGFGSNLKIVNALIDLY- 243

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S+    E A  +F  +   +V  WN+++      N     + L+ EM+     PN  T 
Sbjct: 244 -SKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTI 302

Query: 137 PTVFKACSITEADKEGVQVHAHVVK--NGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
            ++  AC+   A   G  +H ++ K    +     +++S I MYA  G +  A Q+ +  
Sbjct: 303 VSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM 362

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEAR 250
               +  WNA+I G+   G      +LF    K+  + +  ++  ++S  +  G+ +  R
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422

Query: 251 KLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            +F  M    +IT     +  +ID     G +KEA E+   M    ++P   +   +L A
Sbjct: 423 HIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTM---PMEPDGVIWCSLLKA 479

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKV 353
           C   G L+    + +   RN + V+     + V   ++YA  G  D   KV
Sbjct: 480 CRRHGNLE----LAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKV 526


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/622 (41%), Positives = 372/622 (59%), Gaps = 49/622 (7%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H+ I+K G   D +V   L+  H  S F N  LA  +F+     ++  +N++++   E
Sbjct: 132 EVHSHIIKHGFESDLFVRNALI--HLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
            N+P   + L+ EM      P++FT+  +F  CS+      G Q+HA V KN        
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKN-------- 241

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST-KDKN 229
                            R I      S+++  +A++D Y KCG I  A+ +F +    K+
Sbjct: 242 ----------------LRSI-----DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKS 280

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             ++++M+ G+AR G    ARKLFN M+++D I+W+A+I GY++ G   EALE+F EM+ 
Sbjct: 281 AAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEA 340

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWI-HDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
             IKP +  L  VL+ACA LGA D G  + H +++      + +L  A++DMYAKCG +D
Sbjct: 341 LGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSID 400

Query: 349 MAWKVFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
            A ++F  +   MK  F +N+MI GLA HG  + AI +F ++    ++PD +TF  VL A
Sbjct: 401 SALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCA 460

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C H+G+I+ G +    M   YGI P++EHYGC+VDLLGR G L EA +++  MP E N+ 
Sbjct: 461 CGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSV 520

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMK 512
           +W ALL ACR HG V+ GE  G+ LLEME Q+               + ++  ++RK+M+
Sbjct: 521 IWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVME 580

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           + GI+  PG S I++ G IH F   D SHPQ KEI LMLK +  +LK  GY PN++QV+F
Sbjct: 581 DHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMF 640

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           DIDEEEKE+   YHSEKLA+AFG +   P  TIR++KNLR+C DCH A KL+S+++ R+I
Sbjct: 641 DIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREI 700

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
            VRD +R+HHFRNG CSC DFW
Sbjct: 701 TVRDTMRFHHFRNGSCSCMDFW 722



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 179/433 (41%), Gaps = 81/433 (18%)

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC---VNKARQILDDGSKSDVICWNALI 206
           K+G+Q+HA  + NGL   +   S  I  ++  G    ++ +R +       ++  WN +I
Sbjct: 23  KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI 82

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGS---------------------------------- 232
            GY +  +   A  L+ S   K                                      
Sbjct: 83  RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF 142

Query: 233 ------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  NA+I  ++ FG    AR LF+E   +D ++++ +I GY +    + AL +F E
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA--VLGTALVDMYAKC 344
           MQ   I P +F    + + C+ L   + G  IH  V +N   +D+  +L +A+VDMYAKC
Sbjct: 203 MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC 262

Query: 345 GRLDM---------------AW-----------------KVFEDMKMKEVFTWNAMIGGL 372
           G +++               AW                 K+F  M  ++V +W AMI G 
Sbjct: 263 GLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY 322

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           +  G+  +A+ELF +M+   ++PD +T   VLSACA  G  D G +      +    +  
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQN 382

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA-VWEALLGACRKHGEVEFGERLGKIL 491
                 ++D+  + G +  A E+   +        V+ +++    +HG    GE    + 
Sbjct: 383 TILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG---LGETAITVF 439

Query: 492 LEMEPQNRRCDDV 504
            E+     + D+V
Sbjct: 440 RELISTGLKPDEV 452



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 232 SYNAMISGFARFGR---FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           S + +IS F+  G     + +R LF++++  +   W+ +I GY++    +EA+ ++  M 
Sbjct: 43  SISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMI 102

Query: 289 RDKIKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
              I P   F    +L +CA L +L+ G  +H H+ ++    D  +  AL+ +Y+  G L
Sbjct: 103 AKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNL 162

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           ++A  +F++  ++++ ++N MI G A   + + A+ LF +MQ   + PD  TF  + S C
Sbjct: 163 NLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVC 222

Query: 408 A--HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           +  +   + + + A  Y + +  ID  +     IVD+  + G +  AE V S+M    +A
Sbjct: 223 SVLNEPNVGKQIHAQVY-KNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSA 281

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEME-----------PQNRRCDDVAKMRKLMKER 514
           A W +++    + GE+    +L   + E +            Q  +C +  ++ K M+  
Sbjct: 282 AAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEAL 341

Query: 515 GIKTN 519
           GIK +
Sbjct: 342 GIKPD 346


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/661 (39%), Positives = 383/661 (57%), Gaps = 55/661 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +HLK  HA +L+ G  +D Y+   +++   N  F N   + ++ +   +PN+F++N+++R
Sbjct: 24  KHLKHIHAALLRLGLDEDTYLLNKVLRFSFN--FGNTNYSFRILDQTKEPNIFLFNTMIR 81

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             + ++     I +Y  M      P+ FT+P V KAC+     + GV++H+ VVK G   
Sbjct: 82  GLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEA 141

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---- 222
           D  VK S I +Y   G ++ A ++ DD    +   W A I GY+  G    A ++F    
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201

Query: 223 ------------------KSTKDKNTGSY-----------------NAMISGFARFGRFE 247
                             K T D  +G +                  A++  + + G  E
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNME 261

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR +F+ M +K+ ++WS++I GY  +G  KEAL++F +M  + +KP  + +  VL +CA
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA 321

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LGAL+ G W  + +  N    ++VLGTAL+DMYAKCGR+D AW+VF  M+ K+   WNA
Sbjct: 322 RLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNA 381

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            I GLAM G   DA+ LF +M++  ++PDR TF  +L AC HAG+++ G +    M+ ++
Sbjct: 382 AISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVF 441

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            + PE+EHYGC+VDLLGRAG L EA ++I SMPME NA VW ALLG CR H + +  E +
Sbjct: 442 TLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVV 501

Query: 488 GKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K L+ +EP               + + ++ AK+R +M ERG+K  PG S I+V+GV+H+
Sbjct: 502 LKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQ 561

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SHP  ++IY  L ++ + LK  GY P +  VLFDI+EEEKE     HSEKLA+A
Sbjct: 562 FLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVA 621

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I+T P   I V+KNLRVC DCH A K IS++  R+IIVRD  R+H F +G CSC D+
Sbjct: 622 FGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDY 681

Query: 654 W 654
           W
Sbjct: 682 W 682


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/691 (38%), Positives = 400/691 (57%), Gaps = 91/691 (13%)

Query: 49  LKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           ++  HA ++K+G H  ++ +S  L  C  +  F  F  A+ VF+++ +PN+ +WN++ R 
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
               ++P   + LY  M+ +   P+ +T+P + K+C+ ++  KEG Q+H HV+K G   D
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSK------------------------------- 196
           ++V +S I MYA  G +  AR++ D  S                                
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTK------------------------------ 226
            DV+ WNA+I GY++ G+ + A ELFK                                 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 227 ----------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                       N    NA+I  +++FG  E A +LF+ + +KD I+W+ +I GYT    
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR---NSICVDAVL 333
           YKEAL +F EM R    P    +  +L ACA LGA+D G WIH ++ +     +   + L
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 334 GTALVDMYAKCGRLDMAWKVFED-MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
            T+L+DMYAKCG +D A +VF+  M  + + TWNAMI G AMHGRA+ A ++F +M+   
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + PD ITF  +LSAC+H+GM+D G      M + Y I P++EHYGC++DLLG +G   EA
Sbjct: 424 IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEA 483

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
           EE+I++MPMEP+  +W +LL AC+ HG +E GE   K L+++EP N              
Sbjct: 484 EEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAA 543

Query: 500 -RCDDVAKMRKLMKERGIKTN-PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
            R ++VAK+R L+ ++G+K   PG S I+++ V+HEF  GD  HPQ +EIY ML+++   
Sbjct: 544 GRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVL 603

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+  G+ P++S+VL +++EE +E A ++HSEKLAIAFG I+T PG  + ++KNLRVC++C
Sbjct: 604 LEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNC 663

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           H ATKLISK++KR+II RDR R+ HFR+G C
Sbjct: 664 HEATKLISKIYKREIIARDRTRFXHFRDGVC 694


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 371/625 (59%), Gaps = 48/625 (7%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           + LKQ  A ++K+    +  ++   +    +    +   A +VFN +  PN F+WN+++R
Sbjct: 2   KQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIR 61

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A    +EP      Y +M+      N +T+P + +AC    A  E +QVH  V+K G   
Sbjct: 62  AYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGS 121

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV   ++ + +YA  G ++ ARQ+ D+  + D + WN +IDGY+K GD++ A  +F    
Sbjct: 122 DVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMP 181

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            KN  S+ ++ISG    G+  EA  L  EM +           G+  DG           
Sbjct: 182 LKNVVSWTSLISGLVEAGQSVEALSLCYEMQNA----------GFELDG----------- 220

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
                       ++ +L ACA+LGALDQG W+H +V  N + VD V+G ALV+MY KCG 
Sbjct: 221 ----------VAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGD 270

Query: 347 LDMAWKVFEDMK--MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           ++ A  VF  +K   K+V+ W AMI G A+HGR  +A+E F +M+RE +RP+ ITF  VL
Sbjct: 271 MEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVL 330

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            AC++ G+++ G +    M+  Y ++P +EHYGC+VDLLGR+G L EA+E+I  MPM+P+
Sbjct: 331 RACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPS 390

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
           A +W ALL AC  H +   G ++G  L+E++  +               +  + A++R  
Sbjct: 391 AVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLK 450

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM-EGYSPNSSQ 569
           MK  G+  +PG S + +NG++HEF  G   HPQ+++I L LK+I E+L+  EGY P +  
Sbjct: 451 MKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKD 510

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           +L D++ EEKETA   HSEKLAIAFG INT PG TIRVIKNLR+C DCH+  KL+S+++ 
Sbjct: 511 LLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYS 570

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+II+RDRVR+HHFR+G CSC D+W
Sbjct: 571 REIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/646 (39%), Positives = 387/646 (59%), Gaps = 43/646 (6%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC + +Q LKQ H+  +K G   D      ++         N   A +VF+++  P++F+
Sbjct: 16  KCKSMYQ-LKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFI 74

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN++++   + + P   +S+Y  M+  + KP++FT+P   K  +   A + G ++  H V
Sbjct: 75  WNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAV 134

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------- 209
           K+G   ++ V+ + I M++  G V+ A ++ D G   +V+ WN ++ GY           
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKM 194

Query: 210 -------LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                   K  D+E  K +FK     N G    M   FA  G  +EA+ +F+ M  +D +
Sbjct: 195 LLVLSACSKLKDLEWGKHIFKYI---NGGIVEHM---FAACGEMDEAQGVFDNMKTRDVV 248

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+A+IDGY +  ++  AL +F EMQ   +KP +F +  +L ACA LGAL+ G W+   +
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCI 308

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            +NS   D+ +G ALVDMY KCG +  A KVF++M  K+ FTW  MI GLA++G  ++A+
Sbjct: 309 DKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEAL 368

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            +F  M    + PD IT+  VL AC    M+D+G    T M   +GI P V HYGC+VDL
Sbjct: 369 AMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDL 424

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN---- 498
           LG  G L EA EVI +MP++PN+ VW + LGACR H  V+  +   K +LE+EP+N    
Sbjct: 425 LGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVY 484

Query: 499 ----------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                     ++ +++ ++RKLM ERGIK  PG S++++NG ++EF  GD SHPQ KEIY
Sbjct: 485 VLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 544

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
             L+ +++ L   GYSP++S+V  D+ EE+KETA   HSEKLAIA+  I++ PG TIR++
Sbjct: 545 AKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIV 604

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLR+C DCH   KL+S+ + R++IV+D+ R+HHFR+G CSCN+FW
Sbjct: 605 KNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/542 (45%), Positives = 350/542 (64%), Gaps = 50/542 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN++T+  VFKAC       EG Q+  H +K GL                          
Sbjct: 30  PNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGL-------------------------- 63

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                +S++   NA+I  Y   G ++ A+ +F  + D++  S+N MI G+   G    A+
Sbjct: 64  -----ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 118

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+EM+++D ++W+ II GY + G +KEAL++F+EM +    P +F L+  LAACA+L 
Sbjct: 119 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLV 178

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED---MKMKEVFTWNA 367
           ALDQG WIH ++ ++ I ++  L  +L+DMYAKCG +D A KVF D   +K+K V+ WNA
Sbjct: 179 ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNA 237

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MIGG AMHG++ +AI+LF +M+ EK+ P+++TF  +L+AC+H  +++ G      M   Y
Sbjct: 238 MIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSY 297

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI+PE+EHYGC+VDLLGR+G L EAEE + +MPM P+A +W ALLGACR H ++E G+R+
Sbjct: 298 GIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRI 357

Query: 488 GKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
           GKI+ E++  +  C              D+   +R+ ++  G K  PG S I++NGV H+
Sbjct: 358 GKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQ 417

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI-DEEEKETAPKYHSEKLAI 592
           F  GD SHPQ K++YL L ++  KLK  GY P   +VL DI DEE+KETA   HSEKLAI
Sbjct: 418 FLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAI 477

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG INT PG  IR++KNLRVC DCH ATK ISKV+KR+IIVRDR+RYHHF++G CSC D
Sbjct: 478 AFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKD 537

Query: 653 FW 654
           +W
Sbjct: 538 YW 539



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 16/255 (6%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           QD Y    ++  +  S       A ++F+ + + +V  W +++   ++       + L+ 
Sbjct: 96  QDLYSWNIMIGGYVGS--GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFH 153

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
           EM+     PN+FT  +   AC+   A  +G  +H ++ K+ +  +  + +S + MYA  G
Sbjct: 154 EMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCG 213

Query: 183 CVNKARQILDD--GSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAM 236
            ++ A ++  D  G K  V  WNA+I GY   G  + A +LF+  K      N  ++ A+
Sbjct: 214 EIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVAL 273

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           ++  +     EE R  F  M     I      +  ++D   + G  KEA E    M    
Sbjct: 274 LNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNM---P 330

Query: 292 IKPRKFVLSCVLAAC 306
           + P   +   +L AC
Sbjct: 331 MAPDATIWGALLGAC 345


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/577 (41%), Positives = 359/577 (62%), Gaps = 46/577 (7%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+  D  P+K ++  + ++C+I+   + G   H  ++K G   D+ +++  +  YA  G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
           +  A+++     + DV+  NA+I    K G +E A+ LF +  ++N+ S+N+MI+ + + 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKD----------------------------- 274
           G    AR +F+    KD ++W+AIIDGY K                              
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180

Query: 275 ---GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
              G +  A+ +F +MQ + +KP +  +  +L+ACA LGALD G WIH +++   + +D 
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           VLG AL+DMY KCG L+ A  VF  +  K +F WN++I GL M+GR ++AI  F  M++E
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 300

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            ++PD +TF  +LS C+H+G++  G +  + M  +YG++P VEHYGC+VDLLGRAGYL E
Sbjct: 301 GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKE 360

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------- 498
           A E+I +MPM+PN+ V  +LL AC+ H + + GE++ + LLE++P +             
Sbjct: 361 ALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYAS 420

Query: 499 -RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R DDV   RKLM +RG+   PG S I+VN ++HEF  GD SHPQ  +I   L +I ++
Sbjct: 421 LSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKE 480

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           LK +G+ PN++ VL DI+EEEKE A +YHSE++A+AFG ++T PG TIRV+KNLR C DC
Sbjct: 481 LKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDC 540

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA KLIS  FKR+IIVRDR R+HHFRNG CSCND+W
Sbjct: 541 HSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           N   WN+++ A ++  E    IS++ +M   + KP + T  ++  AC+   A   G  +H
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
            ++    L  DV + ++ I MY   G +  A  +    S+ ++ CWN++I G    G  E
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 288

Query: 217 GAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAI 267
            A   F    K     +  ++  ++SG +  G     ++ F+EM     +      +  +
Sbjct: 289 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 348

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           +D   + GY KEALE+   M    +KP   VL  +L AC
Sbjct: 349 VDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 384


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/665 (39%), Positives = 381/665 (57%), Gaps = 57/665 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV--WNSV 104
            +L Q HA ++KSG       S   +   A +  +    A+ +F    +P +    +N +
Sbjct: 30  SYLPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89

Query: 105 LRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +RA L    P   + L+ EM+   S    ++ T     K+CS   A   G  V A+ VK 
Sbjct: 90  MRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKR 149

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           GL  D  V SS I MYA  G V  AR + D   +S V+ WNA++  YLK GD     E+F
Sbjct: 150 GLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMF 209

Query: 223 KSTKD---------------------------------------KNTGSYNAMISGFARF 243
           K   +                                       +N     A++  +A+ 
Sbjct: 210 KGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKC 269

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR+LF+ M  +D + WSA+I GYT+    +EAL +F+EMQ  +++P    +  VL
Sbjct: 270 GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVL 329

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           +ACA LGAL+ G W+H +V+R  + +  +LGTALVD YAKCG +D A + FE M +K  +
Sbjct: 330 SACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 389

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           TW A+I G+A +GR  +A+ELF  M+   + P  +TF  VL AC+H+ +++ G +    M
Sbjct: 390 TWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSM 449

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            + YGI P VEHYGC+VDLLGRAG + EA + I +MP+EPNA +W ALL +C  H  V  
Sbjct: 450 ARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGI 509

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GE   K ++ + P +               +  D A +RK MK+RGI+  PG S+I+++G
Sbjct: 510 GEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDG 569

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
           V+ EF   D  HP+++EIY  ++++I ++K+ GY PN++ V  +++E EKE +  +HSEK
Sbjct: 570 VVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEK 629

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG +  DPGATIR+ KNLRVC DCHSATKLISKV+ R+I+VRDR  +HHF++G CS
Sbjct: 630 LAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCS 689

Query: 650 CNDFW 654
           CND+W
Sbjct: 690 CNDYW 694


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/634 (39%), Positives = 370/634 (58%), Gaps = 46/634 (7%)

Query: 36  DILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
            +L      SW  L K+ H  +LK G  +D +V   L+  +     +  E A  VF+ + 
Sbjct: 129 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC--ACVEYARLVFDKMM 186

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           + +V  W++++R+   + E    + L  EM  +  +P++    ++    + T   + G  
Sbjct: 187 ERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKA 246

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +HA+V++N                              +     V    AL+D Y KCG 
Sbjct: 247 MHAYVIRN-----------------------------SNNEHMGVPTTTALLDMYAKCGH 277

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           +  A++LF     K   S+ AMI+G  R  R EEAR LF+   ++D + W+A++  Y + 
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA 337

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
               +A  +F++M+   ++P K  +  +L+ CA  GALD G W+H ++ +  + VD +L 
Sbjct: 338 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN 397

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TALVDMYAKCG ++ A ++F +   +++  WNA+I G AMHG  ++A+++F +M+R+ ++
Sbjct: 398 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 457

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ ITF  +L AC+HAG++  G +    M   +G+ P++EHYGC+VDLLGRAG L EA E
Sbjct: 458 PNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHE 517

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RR 500
           +I SMP++PN  VW AL+ ACR H   + GE     LLE+EP+N               R
Sbjct: 518 MIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANR 577

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             D A +RK MK  G+K  PG S+I+VNG +HEF  GD SHPQ++ I  ML ++  KL  
Sbjct: 578 WSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNE 637

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY P++S VL +IDEEEKETA  YHSEKLA+AFG I+T P   IR++KNLRVC DCH+A
Sbjct: 638 AGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAA 697

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           TKL+SK++ R IIVRDR R+HHFR G CSC D+W
Sbjct: 698 TKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+ +I  YTK    + AL V+ ++++   +   F+   VL AC  +     G  IH  V 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +  +  D  +G AL+ MY +C  ++ A  VF+ M  ++V +W+ MI  L+ +   D A+E
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-----C 438
           L  +M   ++RP  +    +++  A    +  G     Y+ +    +   EH G      
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIR----NSNNEHMGVPTTTA 267

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           ++D+  + G+L  A ++ + +  +     W A++  C +   +E
Sbjct: 268 LLDMYAKCGHLGLARQLFNGL-TQKTVVSWTAMIAGCIRSNRLE 310


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/629 (40%), Positives = 391/629 (62%), Gaps = 55/629 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S   +KQ HA ++ +       ++   +K   N   ++   A K+F+ + +P++F++N++
Sbjct: 191 SINQIKQTHANLITTAQITLPVIANKFLK---NVALASLTYAHKLFDQIPQPDLFIYNTM 247

Query: 105 LRA-CLEHNEPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +++  +  +     I+++  ++  DS   PN++++   F AC      +EG QV  H VK
Sbjct: 248 IKSHSMSPHSYLDSIAVFRSLIR-DSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVK 306

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            GL G+V V                                NALI  + K G +E A+ +
Sbjct: 307 VGLDGNVFVV-------------------------------NALIGMFGKWGRVEDARNV 335

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           F S  D++  S+N MI  +   G    A++LF+EM+++D ++WS II GY + G + EAL
Sbjct: 336 FDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEAL 395

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           + F++M + ++KP ++ +   LAAC++L ALDQG WIH +++R++I ++  L  +L+DMY
Sbjct: 396 DFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMY 455

Query: 342 AKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           AKCG +D A  VF + K+K +V+ WNAMIGG AMHG+ ++AI +F KM+ EK+ P+++TF
Sbjct: 456 AKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTF 515

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +L+AC+H  M+  G      M   YGI+PE+EHYGC+VDLL R+G+L ++EE+I SMP
Sbjct: 516 IALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMP 575

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA-----------KMRK 509
           M P+ A+W ALL ACR + ++E G R+G+I+ E++P +  C+ +            + R 
Sbjct: 576 MAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARM 635

Query: 510 LMKERGIKTN----PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           + ++  I ++    PG S I++NGV HEF  GD SHPQ +EIY  L ++I KLK+ GY P
Sbjct: 636 VREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVP 695

Query: 566 NSSQVLFDI-DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
              +VL D  DEE+KETA   HSEKLAIAFG +NT PG  IR++KNLRVC DCH ATK I
Sbjct: 696 ELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFI 755

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           SKV+ R IIVRDR+RYHHF++G CSC D+
Sbjct: 756 SKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/730 (36%), Positives = 402/730 (55%), Gaps = 102/730 (13%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P   +ATN+      Q+           TS++ LKQ HA +L++    D Y +  L    
Sbjct: 132 PASATATNVGDRALFQQC----------TSFKQLKQIHAQMLRTNKLHDPYAASELFTAA 181

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK--PNK 133
           A S FS  + A KVF+ + +PN++ WN ++RA    ++P + + ++  M+  DS   PNK
Sbjct: 182 AFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLH-DSPFGPNK 240

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD- 192
           FT+P + KA +       G  VH   +K     DV V +S I  YA  G ++ A  + + 
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 193 -DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----------------------- 228
            +G+  D++ WN+++ G+++ G  + A +LF+  +++                       
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 229 ----------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                           N    NA I  F + G  E AR LF+ M  +D ++W+ IIDGY 
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 273 K-------------------------------DGYYKEALEVFNEMQRDK--IKPRKFVL 299
           K                                G  KEAL +F E+Q  K   +P +  L
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L+ACA LGA+D G WIH ++K+  I ++  L T+L+DMY+K G ++ A +VF  +  
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN 540

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K+VF W+AMI GLAMHGR + AIELF  MQ  +++P+ +TF  +L AC+H+G++D G + 
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M+++YG+ P+ +HY C+VD+LGRAG+L EA + I  MP+ P+A+VW ALLGAC  HG
Sbjct: 601 FDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 480 EVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMI 525
            +E  E+    LLE+EP N                 + V+++R+ M++ G+K   G S I
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETAPK 584
           +++G +HEF  GD +HP  ++IY  L +I+ +L+  GY  N+  +L  ++EEE KE A K
Sbjct: 721 EIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALK 780

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSEK+AIAFG I  D    IR++KNLRVC DCH+  K++SKV+ RDI++RDR R+HHF 
Sbjct: 781 LHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFS 840

Query: 645 NGKCSCNDFW 654
            G CSC D+W
Sbjct: 841 GGHCSCQDYW 850


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/621 (39%), Positives = 367/621 (59%), Gaps = 51/621 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           HL Q HAV+ + G   DH+         + +     + ++ +F     P+VF W +++  
Sbjct: 45  HLLQIHAVLFRHG--LDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHG 102

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                   + ++ Y++M+    +PN FT+ ++ K C I    + G  +H+  VK G   D
Sbjct: 103 HALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI----EPGKALHSQAVKLGFDSD 158

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           ++V++                                L+D Y + GD+  A++LF +  +
Sbjct: 159 LYVRT-------------------------------GLLDVYARGGDVVSAQQLFDTMPE 187

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           K+  S  AM++ +A+ G  + AR LF+ M ++D + W+ +IDGYT++G   EAL +F  M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
            + K KP +  +  VL+AC  LGAL+ G W+H +++ N I  +  +GTALVDMY+KCG L
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 307

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           + A  VF+ +  K+V  WN+MI G AMHG + +A++LF  M R  + P  ITF  +LSAC
Sbjct: 308 EDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 367

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
            H+G +  G      M+  YGI+P++EHYGC+V+LLGRAG++ +A E++ +M +EP+  +
Sbjct: 368 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 427

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W  LLGACR HG++  GE++ ++L++    N                 D VA++R +MK+
Sbjct: 428 WGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKD 487

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
            G+K  PG S I+VN  +HEF  G  +HP+ KEIY+ML++I   LK  GY+P +  VL D
Sbjct: 488 SGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHD 547

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           I E EKE + + HSEKLAIAFG INT PG TI+++KNLRVC DCH  TKLISK+  R I+
Sbjct: 548 IGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIV 607

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRDR R+HHF NG CSC D+W
Sbjct: 608 VRDRNRFHHFVNGSCSCGDYW 628


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 380/623 (60%), Gaps = 36/623 (5%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q ++Q HA  LK+  F   +VS  L+  +++ + ++   A  +F+ + + ++  WN++++
Sbjct: 30  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 89

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +E+      I L+ E+V  +  P+ FT P V K C+     +EG Q+H   +K G   
Sbjct: 90  CYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 148

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV V+ S + MY+  G ++ AR++ D     DV+ WN+LIDG                  
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG------------------ 190

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
             N  S+NAMI+G+ + G F+ A +LF +M   D +TW+ +I GY  +G + +A+++F  
Sbjct: 191 --NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFM 248

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M +   +P    L  VL+A + L  L +G WIH ++++N   +D +LGT+L++MYAKCG 
Sbjct: 249 MLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC 308

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           ++ A  VF  ++ K+V  W A+I GL +HG A+ A+ LF +M +  ++P+ I F  VL+A
Sbjct: 309 IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNA 368

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C HAG++D G Q    M   Y I+P +EHYGC+VD+L RAG+L EA+  I +MP+ PN  
Sbjct: 369 CNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKV 428

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMK 512
           +W +LLG  R HG+++ GE   + ++E+ P+   C              + V+ +R++M 
Sbjct: 429 IWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMY 488

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           +RG + +PG S ++  G +HEF  GD SHPQ KEIY  + ++ EKLK  G+ P+++QVL 
Sbjct: 489 KRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLL 548

Query: 573 DID-EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            I+ E+EKE   + HSE+LAIAFG IN  PG  IR++KNLRVC DCHS TKL+SK++ R+
Sbjct: 549 CIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSRE 608

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD  R+HHF+NG CSC D+W
Sbjct: 609 IIVRDNCRFHHFKNGSCSCMDYW 631


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/627 (39%), Positives = 372/627 (59%), Gaps = 47/627 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+ + LKQ H  +L +G   D  + G  V   A +  +N   + +V ++   P +F +NS
Sbjct: 20  TTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNS 79

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           ++RA  + + P R    YS ++       P+ +T+  + +  +   A   G  VH   VK
Sbjct: 80  MIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVK 139

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   D HV+S  I MYA  G ++   ++     + D++C  A++    K GD+      
Sbjct: 140 YGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDV------ 193

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                            GFAR        KLF++M+ KD I W+A+I GY + G  +EAL
Sbjct: 194 -----------------GFAR--------KLFDKMSHKDPIAWNAMISGYVQCGQSREAL 228

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +FN MQR+ +K  +  +  VL+AC+ LGALDQG W H +++RN + +   LGTAL+DMY
Sbjct: 229 SLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMY 288

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG ++ A +VF  MK K V+TW++ IGGLAM+G  +  +ELF  M+++ ++P+ ITF 
Sbjct: 289 AKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFV 348

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL  C+  G+++ G +    M ++YGI+P +EHYGC+VDL GRAG+L EA   I+SMP+
Sbjct: 349 SVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPV 408

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
            P+   W ALL AC+ +  +E GE   + ++E+E +N              +  D V+ +
Sbjct: 409 RPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNV 468

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ M  +G++  PG S+I+V G +HEF  GD SHP+  EI +ML +I  +LK+ GY  N+
Sbjct: 469 RQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANT 528

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           + V FDI+EEEKE A   HSEK+AIAFG I+  P   IR++KNLRVC DCH ATK+ISK 
Sbjct: 529 NPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKA 588

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           F R+I+VRDR R+HHFR+G+CSC  +W
Sbjct: 589 FNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/630 (39%), Positives = 371/630 (58%), Gaps = 49/630 (7%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC T  + LKQ HA +LKSG  QD Y     +    +S FS++   +  FN   +P+ F+
Sbjct: 20  KCPTEVE-LKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDV-FFNGFDRPDTFL 77

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN ++R     ++P R + LY  M+   +  N +T+P + KACS   A +E  Q+HAH+ 
Sbjct: 78  WNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHIT 137

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K G   D+         YA                       N+LI+ Y   G+ + A  
Sbjct: 138 KFGYGHDI---------YAV----------------------NSLINSYAVTGNFKHAHL 166

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE-ITWSAIIDGYTKDGYYKE 279
           LF   ++ +  S+N++I G+ + G  + A  LF +M +K+  I+W+ +I GY + G  KE
Sbjct: 167 LFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKE 226

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL++F+EMQ   + P    L+  L+AC+ LGAL+QG WIH +  +    +D+VL   L+D
Sbjct: 227 ALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLID 286

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG ++ A  VF++MK K V  W A+I G A HG   +AI  F +MQ   ++P+ IT
Sbjct: 287 MYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAIT 346

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC++ G+++ G      +++ Y + P +EHYGC+VDLLGRAG L EA   I  M
Sbjct: 347 FTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKM 406

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P++PNA +W +LL AC+ H  +E GE++G+IL+EM+  +              ++ D  A
Sbjct: 407 PLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAA 466

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           + R+LM+E+G+   PG S I + G  HEF  GD SH +++EI    + +  KL+  GY P
Sbjct: 467 ETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVP 526

Query: 566 NSSQVLFD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
               +L D +D+EEKE     HSEKLAI +G + T PG TIR++KNLRVC+DCH    LI
Sbjct: 527 ELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLI 586

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SK++KRDI++RDR R+HHF++GKCSC D+W
Sbjct: 587 SKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/545 (43%), Positives = 345/545 (63%), Gaps = 45/545 (8%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           MVG   KPN+FT  TV KAC+   + ++G Q H +++K G                    
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGF------------------- 41

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                       +SDV+   AL+  Y +CG +E A  +F    +++T ++NAMI+G A+ 
Sbjct: 42  ------------ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQN 89

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
              ++A KLF EM+++D ++W+A+I GY ++GY  E+L VFN+M++  +K  +F++  VL
Sbjct: 90  RDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVL 149

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           +ACA L AL+ G   H +V ++   +D V+G+ALVDMYAK G ++ A +VF+ M  +   
Sbjct: 150 SACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEV 209

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WN++I G A HGR +DA+ LF +M +  ++P+ I+F  VLSAC+H G+++ G      M
Sbjct: 210 SWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLM 269

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            Q YGI P+V HY C++DLLGRAG L EAE  I+ MP+EP+ +VW ALLGACR HG  E 
Sbjct: 270 TQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTEL 329

Query: 484 GERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            +R+ + LL ME Q                + DD AK+RKLMK+RG+   PG S I+V  
Sbjct: 330 AKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKT 389

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
           ++H F  G+ SHPQ+KEI+  L+ +  K+K  GY PN + VL D++++EKE +  +HSEK
Sbjct: 390 IMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEK 449

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG INT+PG TIRV KNLRVC DCH+  K IS  F R I+VRD  R+HHF++G+CS
Sbjct: 450 LAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCS 509

Query: 650 CNDFW 654
           C D+W
Sbjct: 510 CGDYW 514



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 154/343 (44%), Gaps = 27/343 (7%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            ++  HA +R  + + ALK+F  + + +V  W +V+    ++      ++++++M     
Sbjct: 81  AMITGHAQNR--DMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGM 138

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           K ++F   +V  AC+   A + G Q HA+VV++G   D+ V S+ + MYA  G +  A Q
Sbjct: 139 KSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQ 198

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGR 245
           + D   + + + WN++I G  + G    A  LF    ++    N  S+  ++S  +  G 
Sbjct: 199 VFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGL 258

Query: 246 FEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
             E R  FN M     I      ++ +ID   + G   EA    N M    ++P   V  
Sbjct: 259 VNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM---PVEPDVSVWG 315

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            +L AC   G  +    I +H+    + +  +    L ++YA  G+ D A KV + MK +
Sbjct: 316 ALLGACRIHGNTELAKRIAEHLLGMEVQIAGIY-VLLSNIYAAAGQWDDAAKVRKLMKDR 374

Query: 361 EV-----FTW-------NAMIGGLAMHGRADDAIELFFKMQRE 391
            V     ++W       +A + G   H +  +  E    + R+
Sbjct: 375 GVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRK 417


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/704 (38%), Positives = 389/704 (55%), Gaps = 63/704 (8%)

Query: 13  HLKPEEISATNIPTSEFSQKTILD-ILNTKCHTSWQHLKQAHAVILKSGHFQD-----HY 66
           HL+   ++AT +P +      +      T    + + + Q HA +LKSG         H 
Sbjct: 43  HLR-TRMAATALPAARLPAPGMPSPARQTPRRAALRDVPQLHATLLKSGAMTTSPDSFHS 101

Query: 67  VSGTLVKCHANSRFSNFELALKVFN-SVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEM 124
           +          +  ++   A+++F    H P +   +N ++R+ L    P   + L+ EM
Sbjct: 102 LLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEM 161

Query: 125 VG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           +      P++ T     K+CS       G  V A+  K G   D  V +S I MYA  G 
Sbjct: 162 LDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGD 221

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST------------------ 225
           V  A  +        VI WNA+I GY+K GD +   E+FK                    
Sbjct: 222 VVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATA 281

Query: 226 ----KDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITW 264
                D N G +                  A++  +A+ G  ++AR+LF+ M+ +D + W
Sbjct: 282 CGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAW 341

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           SA+I GYT+    +EAL +FNEMQ  ++ P    +  VL+ACA LGAL+ G W+H +++R
Sbjct: 342 SAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRR 401

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
             + +  +LGTALVD YAKCG +  A K FE M ++  +TW A+I G+A +GR+ +A+EL
Sbjct: 402 KDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALEL 461

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F  M    + P  +TF  VL AC+H  +++ G +  T M Q YGI P +EHYGC+VDLLG
Sbjct: 462 FSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLG 521

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           RAG + EA + I +MP+EPNA VW ALL AC  H  VE GE   K ++ ++P +      
Sbjct: 522 RAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYIL 581

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
                    +  + A +RK MKE+G++  PG S+I++ G I EF   D  HPQ+ EIY  
Sbjct: 582 LSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEK 641

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           + ++IE +KM GY PN++    D+DE EK+ +  +HSEKLAIAFG + + PGATIR+ KN
Sbjct: 642 VHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKN 701

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LRVC DCHSATKLISKV+ R+IIVRDR R+HHF++G CSCND+W
Sbjct: 702 LRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/625 (39%), Positives = 378/625 (60%), Gaps = 20/625 (3%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            L Q HA I     F +  V   L+   ++    + + AL +F     PN+FV+N+++R 
Sbjct: 55  QLHQIHAQIFLHNLFSNSRVVTQLIS--SSCSLKSLDYALSIFRCFDHPNLFVFNALIRG 112

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             E++     +S +  M+ +  +P++ T P V K+ +       G  +H  V+K GL  D
Sbjct: 113 LAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFD 172

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSD----VICWNALIDGYLKCGDIEGAKELFK 223
             V+ S + MY   G +    Q+ D+  + +    ++ WN LI+G  K GD+  A  LF+
Sbjct: 173 SFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFE 232

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
           +  ++N GS+N++I+GF R G  + AR+LF +M +K+ ++W+ +I+G++++G +++AL +
Sbjct: 233 AMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSM 292

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  M  + ++P    +   L AC  +GAL  G  IH+++  N   ++  +GTALVDMYAK
Sbjct: 293 FWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAK 352

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG +  A +VF + K K++ TW+ MI G A+HG  D A++ F KM+   + PD + F  +
Sbjct: 353 CGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI 412

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L+AC+H+G +D+GL     M+  Y I+P ++HY  IVDLLGRAG L EA   I SMP+ P
Sbjct: 413 LTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINP 472

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRK 509
           +  +W AL  ACR H  +E  E   + LL++EP++               R +DV ++R 
Sbjct: 473 DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRT 532

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LMK RG++ +PG S I+V G +H F  GD +H + +EI L L++I    K EGY P ++ 
Sbjct: 533 LMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAW 592

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL +I+EEEKE A   HSEKLA+AFG I+T PG+TIR++KNLRVC DCHS  K  SK+ +
Sbjct: 593 VLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR 652

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+II+RD  R+HHF++G CSC D+W
Sbjct: 653 REIILRDIKRFHHFKDGTCSCGDYW 677


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/667 (38%), Positives = 379/667 (56%), Gaps = 86/667 (12%)

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C  +  F     A  VF ++ +PN  +WN+++R     ++P   ++LY  MV +   PN 
Sbjct: 5   CVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNS 64

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY--------------- 178
           +T+P + K+C+ ++   EG Q+H  V+K G   D++V +S I MY               
Sbjct: 65  YTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDR 124

Query: 179 ----------------ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
                           A  G +  A+++ D+    DV+ WNA+I GY + G  + A ELF
Sbjct: 125 SSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELF 184

Query: 223 KSTK---------------------------------------DKNTGSYNAMISGFARF 243
           +                                          D N    NA+I  +++ 
Sbjct: 185 EEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKC 244

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  E A  LF  ++ KD I+W+ +I GYT    YKEAL +F EM R    P    +  VL
Sbjct: 245 GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVL 304

Query: 304 AACASLGALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
            ACA LGA+D G WIH ++ +    +   + L T+L+DMYAKCG ++ A +VF  M  K 
Sbjct: 305 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 364

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           + +WNAMI G AMHGRAD + +LF +M++  + PD ITF  +LSAC+H+GM+D G     
Sbjct: 365 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFR 424

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M Q Y + P++EHYGC++DLLG +G   EAEE+I++M MEP+  +W +LL AC+ HG V
Sbjct: 425 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 484

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           E  E   + L+++EP+N               R +DVA++R L+  + +K  PG S I+V
Sbjct: 485 ELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEV 544

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           + V+ EF  GD  HPQ +EIY ML+++   L+  G+ P++S+VL +++EE KE A ++HS
Sbjct: 545 DSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 604

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG I+T PG  + ++KNLRVC +CH ATKL+SK++KR+I+ RDR R+HHFR+G 
Sbjct: 605 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGV 664

Query: 648 CSCNDFW 654
           CSCND+W
Sbjct: 665 CSCNDYW 671


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 377/662 (56%), Gaps = 55/662 (8%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           +  LK  HA +L+    QD+Y+   ++ C  +   +N+  +  VF+ V +PN+F+WN+++
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNY--SKLVFSQVKEPNIFLWNTMI 86

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R  +  +     I LY  M G    PN FT P V KAC+     + G+++H+ +VK G  
Sbjct: 87  RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
            DV VK+S + +Y      + A ++ DD    +V+ W A+I GY+  G    A   FK  
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 224 -------------------------------------STKDKNTGSYNAMISGFARFGRF 246
                                                S   +N     +++  + + G  
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +F+ M +KD ++WS +I GY  +G  ++AL++F +MQ + +KP  + +  VL+AC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A+LGALD GIW    + RN    + VLGTAL+DMY+KCG +  AW++F  MK K+   WN
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWN 386

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AM+ GL+M+G A     LF  +++  +RPD  TF  +L  C H G ++ G Q    M+++
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + + P +EHYGC+VDLLGRAG L EA ++I++MPM+PNA VW ALLG C+ H +    E+
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 487 LGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + K L+E+EP               N R ++  K+R  MKE+ I+     S I+++G++H
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EF  GD SH   ++IY  L ++  +LK  G+ P +  VLFDI+EEEKE    YHSEKLA+
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAV 626

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG I + P   IRV+KNLRVC DCH A KLISK+ KR+II+RD  R+H F +G CSC D
Sbjct: 627 AFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRD 686

Query: 653 FW 654
           +W
Sbjct: 687 YW 688


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 377/662 (56%), Gaps = 55/662 (8%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           +  LK  HA +L+    QD+Y+   ++ C  +   +N+  +  VF+ V +PN+F+WN+++
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNY--SKLVFSQVKEPNIFLWNTMI 86

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R  +  +     I LY  M G    PN FT P V KAC+     + G+++H+ +VK G  
Sbjct: 87  RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
            DV VK+S + +Y      + A ++ DD    +V+ W A+I GY+  G    A   FK  
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 224 -------------------------------------STKDKNTGSYNAMISGFARFGRF 246
                                                S   +N     +++  + + G  
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +F+ M +KD ++WS +I GY  +G  ++AL++F +MQ + +KP  + +  VL+AC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A+LGALD GIW    + RN    + VLGTAL+DMY+KCG +  AW++F  MK K+   WN
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWN 386

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AM+ GL+M+G A     LF  +++  +RPD  TF  +L  C H G ++ G Q    M+++
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + + P +EHYGC+VDLLGRAG L EA ++I++MPM+PNA VW ALLG C+ H +    E+
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 487 LGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + K L+E+EP               N R ++  K+R  MKE+ I+     S I+++G++H
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EF  GD SH   ++IY  L ++  +LK  G+ P +  VLFDI+EEEKE    YHSEKLA+
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAV 626

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG I + P   IRV+KNLRVC DCH A KLISK+ KR+II+RD  R+H F +G CSC D
Sbjct: 627 AFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRD 686

Query: 653 FW 654
           +W
Sbjct: 687 YW 688


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/588 (42%), Positives = 359/588 (61%), Gaps = 47/588 (7%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVF 140
           N E A K+FN + + ++  W S L +C E NE +   + L+ EM       ++    +V 
Sbjct: 238 NVEEACKLFNEMKQKDLVSW-SALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVL 296

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
            ACS       G  VH  VVK G+   V+++                             
Sbjct: 297 SACSRLLVVITGKLVHGLVVKVGIETYVNLQ----------------------------- 327

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             NALI  Y  C ++  A++LF  +   +  S+N+MISG+ + G  E+AR LF+ M DKD
Sbjct: 328 --NALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKD 385

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++WSA+I GY +   + E L +F EMQ +  KP + +L  V++AC  L ALDQG WIH 
Sbjct: 386 NVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHA 445

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           ++++N + ++ +LGT L++MY K G ++ A +VF+ ++ K V TWNA+I GLAM+G  D 
Sbjct: 446 YIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDK 505

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           +++ F +M+   + P+ ITF  VL AC H G++D G +    M Q + I P ++HYGC+V
Sbjct: 506 SLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMV 565

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500
           DLLGRAG L EAEE+I SMPM P+ + W ALLGAC+K+G+ E GER+G+ L+E+ P +  
Sbjct: 566 DLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDG 625

Query: 501 CD--------------DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
            +              DV ++R +M++ G+   PG SMI+ +G +HEF  GD +HPQ + 
Sbjct: 626 FNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEH 685

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I  ML ++ +KLK+EGY+P++ +V  DIDEEEKET    HSEKLAIAFG I  DP   IR
Sbjct: 686 IEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIR 745

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLR+C DCH+A KLISK F R+I+VRDR R+HHF+ G CSC D+W
Sbjct: 746 IVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 257/496 (51%), Gaps = 43/496 (8%)

Query: 24  IPTSEFSQKTILDILNT---KCHTSWQHLKQAHAVI---LKSGHFQDHYVSGTLVKCHAN 77
           IPT        L IL T   KC    Q++KQ + ++   + SG F+D + +  L+K    
Sbjct: 15  IPTFTLKPTLTLPILETHLQKC----QNIKQFNQILSQMILSGFFKDSFAASRLLKFSTE 70

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
             F N   + ++F+ +  PN F+ N++++  ++ N P + I +Y  M+  +   + +TYP
Sbjct: 71  LPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYP 130

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            +F++CSI  A+ +G  +  HV+K G   DV+++++ I MYA  G ++ AR++ D  S  
Sbjct: 131 ILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVL 190

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           D++ WN+++ GY+  G++E AK+++    ++N  + N+MI  F + G  EEA KLFNEM 
Sbjct: 191 DMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMK 250

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
            KD ++WSA+I  Y ++  Y+EAL +F EM  + I   + V+  VL+AC+ L  +  G  
Sbjct: 251 QKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKL 310

Query: 318 IHDHVKR-------------------------------NSICVDAVLGTALVDMYAKCGR 346
           +H  V +                                S C+D +   +++  Y KCG 
Sbjct: 311 VHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGE 370

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           ++ A  +F+ M  K+  +W+AMI G A   R  + + LF +MQ E  +PD      V+SA
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISA 430

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C H   +D+G     Y+++  G+   +     ++++  + G + +A EV   +  E   +
Sbjct: 431 CTHLAALDQGKWIHAYIRK-NGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVS 488

Query: 467 VWEALLGACRKHGEVE 482
            W AL+     +G V+
Sbjct: 489 TWNALILGLAMNGLVD 504


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 398/716 (55%), Gaps = 91/716 (12%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           +E     IL+ ++ +C  + Q LKQ HA +L++  F D Y +  L+  +A S  S    A
Sbjct: 68  NEVESTNILEFID-QCTNTMQ-LKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYA 125

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSI 145
             VFN + +PN++ WN+++R     ++P +   ++  M+   S+ PNKFT+P +FKA S 
Sbjct: 126 KNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASR 185

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +    G  +H  V+K  L  D+ + +S I  Y   G  + A ++  +    DV+ WNA+
Sbjct: 186 LKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAM 245

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTG--------------------------SY------ 233
           I+ +   G  + A  LF+  + K+                            SY      
Sbjct: 246 INAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGF 305

Query: 234 -------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE------- 279
                  NAM+  + + G   +A+ LFN+M++KD ++W+ ++DG+ K G Y E       
Sbjct: 306 TEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDA 365

Query: 280 ------------------------ALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQ 314
                                   AL +F+EMQ  K  KP +  L C L A A LGA+D 
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G WIH ++K++ I ++  L T+L+DMYAKCG L+ A +VF  ++ K+V+ W+AMIG LAM
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAM 485

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G+   A++LF  M    ++P+ +TF  +L AC HAG+++ G Q    M+ +YGI P+++
Sbjct: 486 YGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQ 545

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VD+ GRAG L +A   I  MP+ P AAVW ALLGAC +HG VE  E   + LLE+
Sbjct: 546 HYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLEL 605

Query: 495 EPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP N                 + V+ +RKLM++  +K  P  S IDVNG++HEF  GD S
Sbjct: 606 EPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNS 665

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK--ETAPKYHSEKLAIAFGFIN 598
           HP  ++IY  L +I EK K  GY P+ S +L  + EE+   E +   HSEKLAIAFG I+
Sbjct: 666 HPFSQKIYSKLDEISEKFKPIGYKPDMSNLL-QLSEEDNLMEQSLNVHSEKLAIAFGLIS 724

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T     IR++KN+R+C DCH+  KL+S+++ RDI++RDR R+HHFR GKCSC D+W
Sbjct: 725 TASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 379/661 (57%), Gaps = 86/661 (13%)

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           F     A+ +F ++ +PN+ +WN++ R    +++    + LY  M+ +   PN +++P +
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA-------------------- 179
            K+C+ ++A  EG Q+H HV+K G   D++V +S I MYA                    
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 180 -----------CFGCVNKARQILDDGSKSDVICWNALIDGYL------------------ 210
                        G +N AR++ D+ S  DV+ WNA+I GY+                  
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 211 -----------------KCGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEA 249
                            + G IE  ++L    +D   GS     N +I  +++ G  E A
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             LF  +  KD I+W+ +I G+T    YKEAL +F EM R    P    +  VL ACA L
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311

Query: 310 GALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           GA+D G WIH ++ +    +   + L T+L+DMYAKCG ++ A +VF+ M  + + +WNA
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G AMHG+A+ A +LF KM++  + PD ITF  +LSAC+H+GM+D G      M Q Y
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P++EHYGC++DLLG  G   EA+E+I +MPMEP+  +W +LL AC+ H  VE GE  
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESY 491

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + L+++EP+N               R D VAK+R L+ ++GIK  PG S I+++ V+HE
Sbjct: 492 AQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHE 551

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HP+ +EIY ML+++   ++  G+ P++S+VL +++EE KE A ++HSEKLAIA
Sbjct: 552 FIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIA 611

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I+T PG  + ++KNLRVC +CH ATKLISK++KR+II RDR R H  ++G  SC+D+
Sbjct: 612 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDY 671

Query: 654 W 654
           W
Sbjct: 672 W 672



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 168/375 (44%), Gaps = 48/375 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           L+ AH V  +S H   H VS T L+  +A+  + N   A K+F+ +   +V  WN+++  
Sbjct: 116 LEDAHKVFDRSSH--RHVVSYTALITGYASRGYINN--ARKLFDEISVKDVVSWNAMISG 171

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +E       + LY +M+  + KP++ T  TV  AC+ + + + G Q+H+ +  +G   +
Sbjct: 172 YVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSN 231

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFK 223
           + + +  I +Y+  G V  A  +    +K DVI WN LI G+      + A    +E+ +
Sbjct: 232 IKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLR 291

Query: 224 STKDKN-------------------------------TGSYNA------MISGFARFGRF 246
           S +  N                                G  NA      +I  +A+ G  
Sbjct: 292 SGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI 351

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A+++F+ M  +   +W+A+I G+   G    A ++F++M+++ I P       +L+AC
Sbjct: 352 EAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSAC 411

Query: 307 ASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFT 364
           +  G LD G  I   + ++  I         ++D+   CG    A ++   M M+ +   
Sbjct: 412 SHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI 471

Query: 365 WNAMIGGLAMHGRAD 379
           W +++    MH   +
Sbjct: 472 WCSLLKACKMHNNVE 486


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/628 (38%), Positives = 377/628 (60%), Gaps = 48/628 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+ + +KQ HA ++  G   + +  G  V   A    +N + A K+ N  + P +F  NS
Sbjct: 20  TTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNS 79

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSK---PNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           ++RA  + + P +    Y+ ++  ++    P+ +T+  + + C+  +A   G+ VH  V+
Sbjct: 80  MIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVI 139

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K+G   D HV++  + MYA  GC++    + D   + D++   A+++   KCGDI+ A  
Sbjct: 140 KHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFA-- 197

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                                        RK+F+EM ++D +TW+A+I GY + G  +EA
Sbjct: 198 -----------------------------RKMFDEMPERDHVTWNAMIAGYAQCGRSREA 228

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L+VF+ MQ + +K  +  +  VL+AC  L  LD G W+H +V+R  + +   LGTALVDM
Sbjct: 229 LDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDM 288

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG +D A +VF  MK + V+TW++ IGGLAM+G  +++++LF  M+RE ++P+ ITF
Sbjct: 289 YAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITF 348

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL  C+  G+++ G +    M+ +YGI P++EHYG +VD+ GRAG L EA   I+SMP
Sbjct: 349 ISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMP 408

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAK 506
           M P+   W ALL ACR +   E GE   + ++E+E +N              +  + V+ 
Sbjct: 409 MRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSS 468

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R+ MK +G+K  PG S+I+V+G +HEF  GD SHP+  EI + L++I + L++ GY  N
Sbjct: 469 LRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVAN 528

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           ++ VLFDI+EEEKE A   HSEK+AIAFG I+      IRV+ NLR+C DCH+  K+ISK
Sbjct: 529 TNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISK 588

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +F R+IIVRDR R+HHF++G+CSC D+W
Sbjct: 589 IFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/583 (40%), Positives = 364/583 (62%), Gaps = 45/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A K+FN + + ++  W++++    ++      + ++ EM     + ++    +V  AC+ 
Sbjct: 257 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 316

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
               K G  +H  V++ G+   V+++                               NAL
Sbjct: 317 LSIVKTGKMIHGLVIRMGIESYVNLQ-------------------------------NAL 345

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y   G+I  A++LF  + + +  S+N+MISG  + G  E+AR LF+ M +KD ++WS
Sbjct: 346 IHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWS 405

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           A+I GY +   + E L +F+EMQ  +I+P + +L  V++AC  L ALDQG W+H ++++N
Sbjct: 406 AVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN 465

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            + V+ +LGT L+DMY KCG ++ A +VF  M+ K V +WNA+I GLA++G  + ++++F
Sbjct: 466 GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMF 525

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M+   + P+ ITF  VL AC H G++D G      M + +GI+P V+HYGC+VDLLGR
Sbjct: 526 SEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGR 585

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG L EAE++I SMPM P+ A W ALLGAC+KHG+ E GER+G+ L+E++P +       
Sbjct: 586 AGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLL 645

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                     +DV ++R +MK++G+   PG S+I+ NGV+HEF  GD +HP + ++  ML
Sbjct: 646 SNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGML 705

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
            ++ ++LKMEGY+P++++V  DIDEEEKET    HSEKLAIAFG +   P   IR++KNL
Sbjct: 706 NEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNL 765

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH+A KLISK + R+I+VRDR R+H+F+ G CSC D+W
Sbjct: 766 RICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 258/492 (52%), Gaps = 39/492 (7%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVI---LKSGHFQDHYVSGTLVKCHANSRFS 81
           PT  F     L IL T  H    +LKQ + ++   + +G   D + +  L+K   +S F 
Sbjct: 33  PT--FKPTITLSILETHLHNC-HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFI 89

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             + +L++F+ +   N F+WN+++RA ++ N   + + LY  MV  +  P+ +TYP V +
Sbjct: 90  GLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 149

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC++   +  G ++H HV+K G   DV+V+++ I MYA  G +  AR++ D+    D + 
Sbjct: 150 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           WN+++ GY+K GD+E AK +F     +N  + N+MI    + G+  EA KLFNEM++KD 
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDM 269

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           ++WSA+I GY ++G Y+EAL +F EM  + ++  + V+  VL+ACA L  +  G  IH  
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329

Query: 322 VKRNSICVDAVLGTALVDMYA-------------------------------KCGRLDMA 350
           V R  I     L  AL+ MY+                               KCG ++ A
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
             +F+ M  K++ +W+A+I G A H    + + LF +MQ  ++RPD      V+SAC H 
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHL 449

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             +D+G     Y+++  G+   V     ++D+  + G +  A EV + M  E   + W A
Sbjct: 450 AALDQGKWVHAYIRK-NGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWNA 507

Query: 471 LLGACRKHGEVE 482
           L+     +G VE
Sbjct: 508 LIIGLAVNGLVE 519



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 12/241 (4%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           E A  +F+ + + ++  W++V+    +H+     ++L+ EM     +P++    +V  AC
Sbjct: 387 EKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISAC 446

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           +   A  +G  VHA++ KNGL  +V + ++ + MY   GCV  A ++ +   +  V  WN
Sbjct: 447 THLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWN 506

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           ALI G    G +E + ++F   K+     N  ++  ++      G  +E R  F  M +K
Sbjct: 507 ALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEK 566

Query: 260 DEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
             I      +  ++D   + G   EA ++   M    + P       +L AC   G  + 
Sbjct: 567 HGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM---PMAPDVATWGALLGACKKHGDTEM 623

Query: 315 G 315
           G
Sbjct: 624 G 624


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/661 (38%), Positives = 385/661 (58%), Gaps = 61/661 (9%)

Query: 15  KPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKC 74
           +P   S+ ++P    S  T + +L  +   S   +KQ HA ++  G  Q+  + G L+  
Sbjct: 43  EPSGTSSFSLP----SHSTFVQLLKKR--PSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS 96

Query: 75  HANSRFSNFELALKVFNSVHK-PNVFVWNSVLRACLEHNEPWRVISLYSEMV--GVDSKP 131
           +   R  N   A  VF+     P   +WN +++A  +       + L+ +M+  G  +  
Sbjct: 97  YIGCR--NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSA 154

Query: 132 NKFTYPTVFKACSITEADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           +K+T+  VF ACS     +  G  VH  VVK+G   D+ V +S + MY+ F  +  A+++
Sbjct: 155 DKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV 214

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            D+  + DVI W +++                                G+A  G    AR
Sbjct: 215 FDEMPQRDVITWTSVVK-------------------------------GYAMRGELVRAR 243

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASL 309
           +LF+ M  +++++W+ ++ GY    +Y EAL+ FN+M   D++KP + VL  +L+ACA L
Sbjct: 244 ELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHL 303

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GALDQG WIH ++ +N I + + + TAL+DMYAKCGR+D A +VF+ +  +++ TW +MI
Sbjct: 304 GALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMI 363

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            GL+MHG   + +  F +M  E  +PD IT   VL+ C+H+G+++ GL     M  ++GI
Sbjct: 364 SGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGI 423

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P++EHYGC++DLLGRAG L  A E I SMPMEP+   W ALL ACR HG+V+ GER+  
Sbjct: 424 VPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIIN 483

Query: 490 ILLEMEPQNR---------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
            + E+ P +                + + V K+RK M +RG +  PG S I+++GV+HEF
Sbjct: 484 HIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEF 543

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
              D  HP++ EI   L +++ ++ +E GY P++ QVLFD++EE+KE A  +HSEKLA+A
Sbjct: 544 LAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVA 603

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG ++T  G TIR+ KNLR CEDCHSA K IS VF R+I+VRDR R+H FR G CSC D+
Sbjct: 604 FGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDY 662

Query: 654 W 654
           W
Sbjct: 663 W 663


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/663 (38%), Positives = 375/663 (56%), Gaps = 55/663 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S +  ++ HA ILKSG   + Y+  TL+  +A  +  +   A +VF+ +   N+  W ++
Sbjct: 111 SLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDGIRDRNIVSWTAM 168

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + A +  N+       Y  M     KP+K T+ ++  A +  E  + G +VH  + K GL
Sbjct: 169 IEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGL 228

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +  V +S + MYA  G ++KA+ I D   + +V+ W  LI GY + G ++ A EL + 
Sbjct: 229 ELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEK 288

Query: 225 TKD----KNTGSY-----------------------------------NAMISGFARFGR 245
            +      N  +Y                                   NA+I+ + + G 
Sbjct: 289 MQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGG 348

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            +EARKLF ++  +D +TW+A++ GY + G++ EA+++F  MQ+  IKP K   +  L +
Sbjct: 349 LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTS 408

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C+S   L +G  IH  +      +D  L +ALV MYAKCG +D A  VF  M  + V  W
Sbjct: 409 CSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAW 468

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            AMI G A HGR  +A+E F +M+++ ++PD++TF  VLSAC H G+++ G +    M  
Sbjct: 469 TAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 528

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            YGI P VEHY C VDLLGRAG+L EAE VI +MP +P  +VW ALL ACR H +VE GE
Sbjct: 529 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGE 588

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           R  + +L+++P +               R +D  K+R++M++R +   PG S I+V+G +
Sbjct: 589 RAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 648

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F   D SHP+ KEIY  L K+ E++K +GY P++  VL D+DEE+K      HSE+LA
Sbjct: 649 HVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLA 708

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           I +G + T PG  IR++KNLRVC DCH+A+K ISKV  R+II RD  R+HHF +G CSC 
Sbjct: 709 ITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCG 768

Query: 652 DFW 654
           DFW
Sbjct: 769 DFW 771



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 209/429 (48%), Gaps = 69/429 (16%)

Query: 136 YPTVFKA----CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           Y  VF+     C+   + ++G +VHA ++K+G+  + +++++ + MYA  G +  AR++ 
Sbjct: 95  YSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVF 154

Query: 192 DDGSKSDVICWNALIDGYL---------KCGD---IEGAK-------------------- 219
           D     +++ W A+I+ ++         KC +   + G K                    
Sbjct: 155 DGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQ 214

Query: 220 -------ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                  E+ K+  +       +++  +A+ G   +A+ +F+++ +K+ +TW+ +I GY 
Sbjct: 215 VGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA 274

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           + G    ALE+  +MQ+ ++ P K   + +L  C +  AL+ G  +H ++ ++    +  
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +  AL+ MY KCG L  A K+F D+  ++V TW AM+ G A  G  D+AI+LF +MQ++ 
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLA 450
           ++PD++TF   L++C+    +  G    +  QQ+   G   +V     +V +  + G + 
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEG---KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMD 451

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
           +A  V + M  E N   W A++  C +HG                    RC +  +  + 
Sbjct: 452 DARLVFNQMS-ERNVVAWTAMITGCAQHG--------------------RCREALEYFEQ 490

Query: 511 MKERGIKTN 519
           MK++GIK +
Sbjct: 491 MKKQGIKPD 499



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 2/228 (0%)

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D +  S  +    K G  KEAL + N M     +    V   +L  CA L +L+QG  +H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
             + ++ I  +  L   L+ MYAKCG L  A +VF+ ++ + + +W AMI       +  
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A + +  M+    +PD++TF  +L+A  +  ++  G +    + +  G++ E      +
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLELEPRVGTSL 238

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           V +  + G +++A+ +   +P E N   W  L+    + G+V+    L
Sbjct: 239 VGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALEL 285


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/633 (38%), Positives = 384/633 (60%), Gaps = 53/633 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVK---CHANSRFSN----FELALKVFNSVHKP 96
           +S+  LK  H  +L++    D +V+  L+    C  +S F         A  +F+ +  P
Sbjct: 23  SSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNP 82

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           N+FV+N ++R      EP +    Y++M+     P+  T+P + KA +  E    G Q H
Sbjct: 83  NLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTH 142

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           + +V+ G   DV+V+                               N+L+  Y  CG I 
Sbjct: 143 SQIVRFGFQNDVYVE-------------------------------NSLVHMYANCGLIA 171

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A  +F     ++  S+ +M++G+ + G  E+AR++F+EM  ++  TWS +I+GY K+  
Sbjct: 172 AAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNC 231

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           +++A+++F  M+R+ +   + V+  V+++CA LGAL+ G   H++V ++ + V+ +LGTA
Sbjct: 232 FEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTA 291

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMY +CG ++ A +VFE++  K+  +W+++I GLA+HG A  AI  F +M R    P 
Sbjct: 292 LVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPR 351

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            IT   VLSAC+H G++D+GL+    M++ YGI+P +EHYGCIVD+LGRAG LAEAE  I
Sbjct: 352 DITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFI 411

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP++PNA +  ALLGAC+ +   E  ER+G +L+E++P++               + +
Sbjct: 412 LKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWE 471

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS-HPQVKEIYLMLKKIIEKLKME 561
            +  +R +MKE+ +K  PG S+I+++G I++F  GD   HP++ +I  + ++I+ K+++ 
Sbjct: 472 KLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLI 531

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY  N+    FD+DEEEKETA   HSEKLAIA+G + T  G TIR++KNLRVCEDCH+AT
Sbjct: 532 GYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTAT 591

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLIS+V+ R+ IVRDR R+HHFRNG CSC D+W
Sbjct: 592 KLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/642 (37%), Positives = 385/642 (59%), Gaps = 19/642 (2%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           ++   L +LN  C  S    KQ HA +LK G   D +++G L+   A S   + + A ++
Sbjct: 4   TEPLCLSLLNI-C-KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRL 61

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEA 148
           F     P+VF+ N+++R   E + P   +  + EM     S P+ F++  + KA +   +
Sbjct: 62  FRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRS 121

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            + G+Q+H   + +GL   + V ++ I MY   G V  AR++ D+  + + I WNA++  
Sbjct: 122 VRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTA 181

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
             + GD++G +ELF     +N  S+N M++G+ + G  E AR++F EM  KD+++WS +I
Sbjct: 182 CCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMI 241

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            G+  +GY++EA   F E+QR  ++P +  L+ VL+ACA  GAL+ G  +H  ++++ + 
Sbjct: 242 VGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLA 301

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFED-MKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
               +  AL+D Y+KCG + MA  VFE  M  + + +W +M+  LAMHG  ++AI +F K
Sbjct: 302 WIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHK 361

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+   +RPD I F  +L AC+HAG++++G +    M+ MY I+P +EHYGC+VDL GRAG
Sbjct: 362 MEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAG 421

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------- 499
            L +A E +  MP+   A +W  LLGAC  HG+V+  E++ + L E++P N         
Sbjct: 422 QLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSN 481

Query: 500 ------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 +  D A +R+ M E+ I   PG SMI+V+ +++ F  G   +   +E Y  LK+
Sbjct: 482 AYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKE 541

Query: 554 IIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
           II +L++E GY P   +VL DI+EEEKE +   HSEKLA+AFG      G TIR++KNLR
Sbjct: 542 IIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLR 601

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +C DCH+  KLIS+++K +I+VRDR R+H F++G CSC D+W
Sbjct: 602 ICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/597 (41%), Positives = 364/597 (60%), Gaps = 49/597 (8%)

Query: 76  ANSRFSNFELALKVFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN-- 132
            +S   N   ++ +FN  +  PN+F +N++L+A  +HN     IS ++  + + + PN  
Sbjct: 67  VSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPD 126

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           ++T+ +V KAC+      EG +VH  V K                   +GC         
Sbjct: 127 EYTFTSVLKACAGLAQVLEGQKVHCFVTK-------------------YGC--------- 158

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
              +S++   N+L+D Y K G    A++LF     ++  S+N +ISG+   G  ++AR +
Sbjct: 159 ---ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGA 311
           F+ M +K+ ++WS +I GY ++  Y +A+E+F +MQ +  + P    L  VL+ACA LGA
Sbjct: 216 FDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGA 275

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           LD G WIH  ++RN I V   LG AL DMYAKCG +  A  VF +M  ++V +W+ +I G
Sbjct: 276 LDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMG 335

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
           LAM+G A++A   F +M  + + P+ I+F  +L+AC HAG++D+GL+    M Q+YGI P
Sbjct: 336 LAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITP 395

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           ++EHYGC+VDLL RAG L +AE +I+SMPM+PN  VW ALLG CR + + E GER+   +
Sbjct: 396 KIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRI 455

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           LE++  +               R DD A  R  M++      PG S I++N  ++EF  G
Sbjct: 456 LELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMG 515

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SHPQ   IY M++++  K+K+ GY P +  V+ +IDEEEKE A   HSEKLA+AFG I
Sbjct: 516 DSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLI 575

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           NT  G TIR++KNLRVC DCH A K+ISK+ +R+I+VRDR R+HHF++GKCSCND+W
Sbjct: 576 NTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/664 (38%), Positives = 376/664 (56%), Gaps = 56/664 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S +  ++ HA ILKSG   + Y+  TL+  +A  +  +   A +VF+S+   N+  W ++
Sbjct: 62  SLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDSIRDRNIVSWTAM 119

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + A +  N+       Y  M     KP+K T+ ++  A +  E  + G +VH  +V+ GL
Sbjct: 120 IEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGL 179

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +  V +S + MYA  G ++KAR I D   + +V+ W  LI GY + G ++ A EL ++
Sbjct: 180 ELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLET 239

Query: 225 TKDKNTGS---------------------------------------YNAMISGFARFGR 245
            +                                              N++I+ + + G 
Sbjct: 240 MQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGG 299

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            EEARKLF+++  +D +TW+A++ GY + G++ EA+ +F  MQ+  IKP K   + VL +
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTS 359

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C+S   L +G  IH  +      +D  L +ALV MYAKCG +D A  VF  M  + V  W
Sbjct: 360 CSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAW 419

Query: 366 NAMIGGL-AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
            A+I G  A HGR  +A+E F +M+++ ++PD++TF  VLSAC H G+++ G +    M 
Sbjct: 420 TAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMY 479

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
             YGI P VEHY C VDLLGRAG+L EAE VI SMP  P  +VW ALL ACR H +VE G
Sbjct: 480 LDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERG 539

Query: 485 ERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           ER  + +L+++P +               R +D  K+R++M++R +   PG S I+V+G 
Sbjct: 540 ERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGK 599

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F   D SHP+ ++IY+ L K+ E++K  GY P++  VL D+DEE+KE     HSE+L
Sbjct: 600 VHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERL 659

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AI +G + T PG  IR++KNLRVC DCH+ATK ISKV  R+II RD  R+HHF +G CSC
Sbjct: 660 AITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSC 719

Query: 651 NDFW 654
            DFW
Sbjct: 720 GDFW 723



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 209/431 (48%), Gaps = 70/431 (16%)

Query: 135 TYPTVFKA----CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
            Y  VF+     C+   + ++G +VHA ++K+G+  + +++++ + MYA  G +  AR++
Sbjct: 45  VYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRV 104

Query: 191 LDDGSKSDVICWNALIDGYL---------KCGD---IEGAK------------------- 219
            D     +++ W A+I+ ++         KC +   + G K                   
Sbjct: 105 FDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELL 164

Query: 220 --------ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                   E+ ++  +       +++  +A+ G   +AR +F+ + +K+ +TW+ +I GY
Sbjct: 165 QLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGY 224

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G    ALE+   MQ+ ++ P K   + +L  C +  AL+ G  +H ++ ++    + 
Sbjct: 225 AQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGREL 284

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +  +L+ MY KCG L+ A K+F D+  ++V TW AM+ G A  G  D+AI LF +MQ++
Sbjct: 285 WVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQ 344

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYL 449
            ++PD++TF  VL++C+    +  G +     QQ+   G + +V     +V +  + G +
Sbjct: 345 GIKPDKMTFTSVLTSCSSPAFLQEGKR---IHQQLVHAGYNLDVYLQSALVSMYAKCGSM 401

Query: 450 AEAEEVISSMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMR 508
            +A  V + M  E N   W A++ G C +HG                    RC +  +  
Sbjct: 402 DDASLVFNQMS-ERNVVAWTAIITGCCAQHG--------------------RCREALEYF 440

Query: 509 KLMKERGIKTN 519
             MK++GIK +
Sbjct: 441 DQMKKQGIKPD 451



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           K G  KEAL + N M     +    V   +L  CA L +L+QG  +H  + ++ I  +  
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           L   L+ MYAKCG L  A +VF+ ++ + + +W AMI       +  +A + +  M+   
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            +PD++TF  +L+A  +  ++  G +    + +  G++ E      +V +  + G +++A
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA-GLELEPRVGTSLVGMYAKCGDISKA 202

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
             +   +P E N   W  L+    + G+V+    L + + + E
Sbjct: 203 RVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE 244


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/591 (39%), Positives = 353/591 (59%), Gaps = 49/591 (8%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           +     + ++ +F     P+VF W +++          + ++ Y++M+    +PN FT+ 
Sbjct: 20  ASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFS 79

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           ++ K C I    + G  +H+  VK G   D++V++                         
Sbjct: 80  SILKLCPI----EPGKALHSQAVKLGFDSDLYVRT------------------------- 110

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
                  L+D Y + GD+  A++LF +  +K+  S  AM++ +A+ G  + AR LF+ M 
Sbjct: 111 ------GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 164

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           ++D + W+ +IDGYT++G   EAL +F  M + K KP +  +  VL+AC  LGAL+ G W
Sbjct: 165 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 224

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H +++ N I  +  +GTALVDMY+KCG L+ A  VF+ +  K+V  WN+MI G AM G 
Sbjct: 225 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGF 284

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           + +A++LF  M R  + P  ITF  +LSAC H+G +  G      M+  YGI+P++EHYG
Sbjct: 285 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 344

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           C+V+LLGRAG++ +A E++ +M +EP+  +W  LLGACR HG++  GE++ ++L++    
Sbjct: 345 CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA 404

Query: 498 NR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
           N                 D VA++R +MK+ G+K  PG S I+VN  +HEF  G  +HP+
Sbjct: 405 NSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPK 464

Query: 544 VKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGA 603
            KEIY+ML++I   LK  GY+P +  VL DI E EKE + + HSEKLAIAFG INT PG 
Sbjct: 465 RKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGT 524

Query: 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           TI+++KNLRVC DCH  TKLISK+  R I+VRDR R+HHF NG CSC D+W
Sbjct: 525 TIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 31/261 (11%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A  GR + +  LF    +     W+AII G+   G +++AL  + +M    ++P  F  
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 300 SCVLAAC------------ASLGALDQGIWIH----DHVKRNSICVDA------------ 331
           S +L  C              LG  D  +++     D   R    V A            
Sbjct: 79  SSILKLCPIEPGKALHSQAVKLG-FDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 137

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V  TA++  YAK G LD A  +F+ M+ ++   WN MI G   +G  ++A+ LF +M + 
Sbjct: 138 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 197

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           K +P+ +T   VLSAC   G ++ G    +Y++   GI   V     +VD+  + G L +
Sbjct: 198 KAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN-NGIQFNVHVGTALVDMYSKCGSLED 256

Query: 452 AEEVISSMPMEPNAAVWEALL 472
           A  V   +  + +   W +++
Sbjct: 257 ARLVFDKID-DKDVVAWNSMI 276



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 136/303 (44%), Gaps = 25/303 (8%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            ++ C+A  +    + A  +F+ + + +   WN ++    ++  P   + L+  M+   +
Sbjct: 142 AMLTCYA--KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 199

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KPN+ T  +V  AC    A + G  VH+++  NG+  +VHV ++ + MY+  G +  AR 
Sbjct: 200 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 259

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN----AMISGFARFGR 245
           + D     DV+ WN++I GY   G  + A +LFKS         N     ++S     G 
Sbjct: 260 VFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGW 319

Query: 246 FEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
             E   +FN+M D+  I      +  +++   + G+ ++A E+   M    I+P   +  
Sbjct: 320 VTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN---IEPDPVLWG 376

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-----LVDMYAKCGRLDMAWKVFE 355
            +L AC   G +  G       K   + VD  L  +     L ++YA  G  D   ++  
Sbjct: 377 TLLGACRLHGKIALG------EKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 430

Query: 356 DMK 358
            MK
Sbjct: 431 MMK 433



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YA  GRLD +  +F   +   VF W A+I G A+ G  + A+  + +M  + + P+  TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           + +L  C     I+ G +AL       G D ++     ++D+  R G +  A+++  +MP
Sbjct: 79  SSILKLCP----IEPG-KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 461 MEPNAAVWEALLGACRKHGEVE 482
            E +     A+L    KHGE++
Sbjct: 134 -EKSLVSLTAMLTCYAKHGELD 154


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 356/618 (57%), Gaps = 75/618 (12%)

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
           + P   ++ Y+ M  +D + + F  P+V KACS     + G ++H   VKNGL  DV V 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWN----------------------ALIDGY 209
           ++ +QMY+  G +  AR + D  S+ DV+ W+                      A+I GY
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 210 LKCGDIEGAKELFKSTKDKNT--------------------------------------- 230
           ++C D+E  + LF    ++N                                        
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
               A++  + + G    AR +F+ M +KD +TW+A+I  Y +      A ++F +M+ +
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            ++P +  +  +L+ CA  GALD G W H ++ +  + VD +L TAL+DMYAKCG +  A
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            ++F +   +++ TWN M+ G  MHG  + A++LF +M+   ++P+ ITF   L AC+HA
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G++  G      M   +G+ P+VEHYGC+VDLLGRAG L EA ++I SMP+ PN A+W A
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI 516
           +L AC+ H     GE   + LL +EPQN               R +DVA MRK +K+ GI
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
           K  PG S I+VNG++H+F+ GD +HP +++I  ML ++ +KLK  GY P++S VL +IDE
Sbjct: 568 KKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDE 627

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           EEKETA  YHSEKLA+AFG I+T PG  IRV+KNLR+C+DCH+ TKL+SK++KR IIVRD
Sbjct: 628 EEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRD 687

Query: 637 RVRYHHFRNGKCSCNDFW 654
           R R+HHFR G CSC  +W
Sbjct: 688 RNRFHHFREGSCSCGGYW 705



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 170/393 (43%), Gaps = 65/393 (16%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-- 107
           K+ H   +K+G   D +V   L++ +  S   +   A  +F+ + + +V  W++++RA  
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQMY--SECGSLVSARLLFDKMSERDVVSWSTMIRAYI 186

Query: 108 CLEHNEPWRVI--------------------SLYSEMVGVDSKPNKFTYPTVFKACSITE 147
            L +    R I                     L+  M+  +  PN  T  ++  +C    
Sbjct: 187 TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVG 246

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           A + G ++HA++++NG    + + ++ + MY   G +  AR I D     DV+ W A+I 
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 208 GYLKCGDIEGAKELFKSTKDK----------------------NTGSY------------ 233
            Y +   I+ A +LF   +D                       + G +            
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                 A+I  +A+ G    A++LF+E  D+D  TW+ ++ GY   GY ++AL++F EM+
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRL 347
              +KP        L AC+  G + +G  + + +  +   V  V     +VD+  + G L
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 348 DMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRAD 379
           D A+K+ E M +   +  W AM+    +H  ++
Sbjct: 487 DEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN 519



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 24/236 (10%)

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           + + + AL  +  M++  I+   F++  VL AC+ +     G  IH    +N +  D  +
Sbjct: 87  ESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFV 146

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG-------------------LAM 374
             AL+ MY++CG L  A  +F+ M  ++V +W+ MI                     +A 
Sbjct: 147 VNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAG 206

Query: 375 HGRADDAIE---LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
           + R +D  E   LF +M  E + P+ IT   ++ +C   G +  G +   Y+ +  G   
Sbjct: 207 YIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR-NGFGM 265

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            +     +VD+ G+ G +  A  +  SM    +   W A++ A  +   +++  +L
Sbjct: 266 SLALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISAYAQANCIDYAFQL 320


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/646 (40%), Positives = 370/646 (57%), Gaps = 55/646 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  +LK G   D YV  TL+ C   S  SN   A +VFN     +   WNS+L   +
Sbjct: 233 KQVHNHVLKLGFDSDVYVRNTLINCF--SVCSNMTDACRVFNESSVLDSVSWNSILAGYI 290

Query: 110 E-----------HNEPWRVI--------------------SLYSEMVGVDSKPNKFTYPT 138
           E           H  P R I                     L+ EM+  D      T+  
Sbjct: 291 EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKD----MVTWSA 346

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI----LDDG 194
           +       E  +E ++    + K G+  D  V  S +   A    VN  + I    L  G
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 406

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
           ++S +   NALI  Y KCGDI  A++LF      +  S+N+MISG+ +    + A+ +F+
Sbjct: 407 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 466

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            M +KD ++WS++I GY ++  + E L +F EMQ    KP +  L  V++ACA L AL+Q
Sbjct: 467 SMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQ 526

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G W+H ++KRN + ++ +LGT L+DMY KCG ++ A +VF  M  K + TWNA+I GLAM
Sbjct: 527 GKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAM 586

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G  + ++++F  M++  + P+ ITF  VL AC H G++D G      M   + I P V+
Sbjct: 587 NGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVK 646

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HYGC+VDLLGRAG L EAEE+++ MPM P+ A W ALLGAC+KHG+ E G R+G+ L+E+
Sbjct: 647 HYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL 706

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +P +               + DDV ++R +M +  +   PG SMI+ NGVIHEF  GD +
Sbjct: 707 QPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKT 766

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP +  I  ML ++  KLK+EGY+P+ ++VL D+DEEEKE+    HSEKLAIAFG IN  
Sbjct: 767 HPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINIS 826

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           P   IR++KNLR+C DCH+A KLISK F R I+VRDR R+HHF  G
Sbjct: 827 PPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 205/408 (50%), Gaps = 33/408 (8%)

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           RA ++ N P    +LY  M+      + +TYP + +ACSI  ++ E  QVH HV+K G  
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV+V+++ I  ++    +  A ++ ++ S  D + WN+++ GY++ G++E AK ++   
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            +++  + N+MI  F   G   EA KLF+EM +KD +TWSA+I  + ++  Y+EA+  F 
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M +  +   + V    L+ACA+L  ++ G  IH    +        L  AL+ MY+KCG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 346 RLDMAWK-------------------------------VFEDMKMKEVFTWNAMIGGLAM 374
            + +A K                               +F+ M  K+V +W++MI G A 
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +   D+ + LF +MQ    +PD  T   V+SACA    +++G     Y+++  G+   V 
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR-NGLTINVI 544

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
               ++D+  + G +  A EV   M +E   + W AL+     +G VE
Sbjct: 545 LGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 591


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/674 (36%), Positives = 385/674 (57%), Gaps = 58/674 (8%)

Query: 37  ILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           +L      SW  L K+ H  +LK G  +D +V   L+  +     +  E A  VF+ + +
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC--ACVEYARLVFDKMME 157

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
            +V  W++++R+   + E    + L  EM  +  +P++    ++    + T   + G  +
Sbjct: 158 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 156 HAHVVKNGLCGDVHVKSSG--IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           HA+V++N     + V ++   + MYA  G +  ARQ+ +  ++  V+ W A+I G ++  
Sbjct: 218 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 277

Query: 214 DIEGAKELFKSTKDKN-----------------TGSY----------------------N 234
            +E   +LF   +++N                 TG+                        
Sbjct: 278 RLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALAT 337

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           A++  + +      AR LF+   ++D + W+A++  Y +     +A  +F++M+   ++P
Sbjct: 338 ALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 397

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            K  +  +L+ CA  GALD G W+H ++ +  + VD +L TALVDMYAKCG ++ A ++F
Sbjct: 398 TKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLF 457

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
            +   +++  WNA+I G AMHG  ++A+++F +M+R+ ++P+ ITF  +L AC+HAG++ 
Sbjct: 458 IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVT 517

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +    M   +G+ P++EHYGC+VDLLGRAG L EA E+I SMP++PN  VW AL+ A
Sbjct: 518 EGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 577

Query: 475 CRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNP 520
           CR H   + GE     LLE+EP+N               R  D A +RK MK  G+K  P
Sbjct: 578 CRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEP 637

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G S+I+VNG +HEF  GD SHPQ++ I  ML ++  KL   GY P++S VL +IDEEEKE
Sbjct: 638 GHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKE 697

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
           TA  YHSEKLA+AFG I+T P   IR++KNLRVC DCH+ATKL+SK++ R IIVRDR R+
Sbjct: 698 TALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRF 757

Query: 641 HHFRNGKCSCNDFW 654
           HHFR G CSC D+W
Sbjct: 758 HHFREGYCSCGDYW 771



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 183/417 (43%), Gaps = 56/417 (13%)

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           F  P+V KAC      + G ++H  V+K GL  DV V ++ + MY    CV  AR + D 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKE----------------------LFKSTKDKNTG 231
             + DV+ W+ +I    +  + + A E                      LF  T +   G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 232 -------------------SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                              +  A++  +A+ G    AR+LFN +  K  ++W+A+I G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           +    +E  ++F  MQ + I P +  +  ++  C   GAL  G  +H ++ RN   V   
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           L TALVDMY KC  +  A  +F+  + ++V  W AM+   A     D A  LF +M+   
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI-----VDLLGRAG 447
           +RP ++T   +LS CA AG +D G    +Y      ID E     CI     VD+  + G
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSY------IDKERVEVDCILNTALVDMYAKCG 448

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            +  A  +     +  +  +W A++     HG   +GE    I  EME Q  + +D+
Sbjct: 449 DINAAGRLFIE-AISRDICMWNAIITGFAMHG---YGEEALDIFAEMERQGVKPNDI 501



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 171/401 (42%), Gaps = 42/401 (10%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA-HAVILKSGHFQDHYVSGTLVKCH 75
           E I   N      S+  ++ ++N    T+   + +A HA ++++ + +   V  T     
Sbjct: 181 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 240

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
             ++  +  LA ++FN + +  V  W +++  C+  N       L+  M   +  PN+ T
Sbjct: 241 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT 300

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             ++   C  T A + G Q+HA++++NG    + + ++ + MY     +  AR + D   
Sbjct: 301 MLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQ 360

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKD--------------------------KN 229
             DV+ W A++  Y +   I+ A  LF   +                           K 
Sbjct: 361 NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 420

Query: 230 TGSY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
             SY              A++  +A+ G    A +LF E   +D   W+AII G+   GY
Sbjct: 421 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 480

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL++F EM+R  +KP       +L AC+  G + +G  + + +      V  +    
Sbjct: 481 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 540

Query: 337 -LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH 375
            +VD+  + G LD A ++ + M +K     W A++    +H
Sbjct: 541 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/664 (37%), Positives = 381/664 (57%), Gaps = 56/664 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S    KQ H ++L+ G  QD Y+   L++  ++  F+  + A  VF     PN+F++N++
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLINLLLR--SSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNG 163
           +R  + ++     +S+Y+ M      P+ FT+P V KAC+ +      G+ +H+ V+K G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              DV VK+  + +Y+  G +  AR++ D+  + +V+ W A+I GY++ G    A  LF+
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 224 STKD---------------------------------KNTGSY------NAMISGFARFG 244
              +                                 + +GS        +++  +A+ G
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG 252

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
             EEAR++F+ M +KD + WSA+I GY  +G  KEAL+VF EMQR+ ++P  + +  V +
Sbjct: 253 SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFS 312

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC+ LGAL+ G W    +  +    + VLGTAL+D YAKCG +  A +VF+ M+ K+   
Sbjct: 313 ACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVV 372

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           +NA+I GLAM G    A  +F +M +  M+PD  TF  +L  C HAG++D G +  + M 
Sbjct: 373 FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMS 432

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            ++ + P +EHYGC+VDL  RAG L EA+++I SMPME N+ VW ALLG CR H + +  
Sbjct: 433 SVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLA 492

Query: 485 ERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           E + K L+E+EP N               R D+  K+R  + ++G++  PG S ++V+GV
Sbjct: 493 EHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGV 552

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +HEF  GD SHP   +IY  L+ + + L+  GY+P +  VLFD++EEEKE     HSEKL
Sbjct: 553 VHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKL 612

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           A+AF  I+T     IRV+KNLRVC DCH A KL+SKV  R+IIVRD  R+HHF  G CSC
Sbjct: 613 AVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSC 672

Query: 651 NDFW 654
            D+W
Sbjct: 673 RDYW 676


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/559 (43%), Positives = 347/559 (62%), Gaps = 46/559 (8%)

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
            TYP V KAC+ +     G+ VH HVVK+G   D ++ +S I +YA    +  A+Q+   
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 194 GSKSDVICWNALIDGYLK-------------------------------CGDIEGAKELF 222
            S  DV+ WNA+IDGY+K                                G I+ AK LF
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               ++N  S+N+M+SGF + G  EEA  LF+EM  +D ++W++++  Y + G   EAL 
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F++M+   +KP +  +  +L+ACA LGALD+G+ +H ++  N I V++++GTALVDMYA
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 240

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG++ +A +VF  M+ K+V  WN +I G+A+HG   +A +LF +M+   + P+ ITF  
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +LSAC+HAGM+D G + L  M   YGI+P+VEHY C++DLL RAG L EA E+I +MPME
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMR 508
           PN +   ALLG CR HG  E GE +GK L+ ++P                ++ DD  K+R
Sbjct: 361 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 420

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNS 567
            LMK  GI   PG S+I++ G++H F  GD SHP+  +IY  L +I  +LK   GYS ++
Sbjct: 421 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADT 480

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
             VL D++EE+KE A   HSEKLAIA+G ++ D    IR++KNLRVC DCH  TKLISKV
Sbjct: 481 GNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKV 540

Query: 628 FKRDIIVRDRVRYHHFRNG 646
           + R+IIVRDR R+HHF +G
Sbjct: 541 YGREIIVRDRNRFHHFEDG 559



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 19/301 (6%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
            VKC       N E A  +F+ +   +V  WNS+L    +  +P   ++L+ +M  V  K
Sbjct: 138 FVKC------GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVK 191

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P + T  ++  AC+   A  +G+ +H ++  N +  +  V ++ + MYA  G ++ A Q+
Sbjct: 192 PTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 251

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRF 246
            +     DV+ WN +I G    G ++ A++LFK  K    + N  ++ AM+S  +  G  
Sbjct: 252 FNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMV 311

Query: 247 EEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           +E +KL + M+    I      +  +ID   + G  +EA+E+   M    ++P    L  
Sbjct: 312 DEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM---PMEPNPSALGA 368

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L  C   G  + G  +   +     C        L ++YA   + D A KV   MK+  
Sbjct: 369 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRY-ILLSNIYAAAKKWDDARKVRNLMKVNG 427

Query: 362 V 362
           +
Sbjct: 428 I 428


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/634 (37%), Positives = 380/634 (59%), Gaps = 18/634 (2%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L +KC +S +  KQ HA I K+G   D  V G L+   A +       AL++F+    P+
Sbjct: 8   LLSKC-SSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPD 66

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVH 156
            F+ N+++R+      P   +  + ++    +  P+ FT+    KA + +   + G+Q+H
Sbjct: 67  TFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           +   ++G    + V ++ I MYA  G    AR++ D+ S+ +V+ WNA++    +CGD+E
Sbjct: 127 SQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVE 186

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
           GA+++F     +N  S+N M++G+A+ G    AR++F EM  +DE++WS +I G+  +G 
Sbjct: 187 GAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGC 246

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           + EA   F E+ R++I+  +  L+ VL+ACA  GA + G  +H  V++        +  A
Sbjct: 247 FDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNA 306

Query: 337 LVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           L+D Y+KCG + MA  VF++M + + + +W ++I GLAMHG  ++AI+LF +M+   +RP
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRP 366

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D ITF  +L AC+H+G+++ G    + M+ +YGI+P +EHYGC+VDL GRA  L +A E 
Sbjct: 367 DGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEF 426

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I  MP+ PNA +W  LLGAC  HG +E  E +   L EM+P N               + 
Sbjct: 427 ICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKW 486

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
            DV+ +R+ M E  +K  PG SMI+++ VI+ F  G+  +   +E +  L++I+ +L+ E
Sbjct: 487 KDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTE 546

Query: 562 -GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY+P    VL DI+EEEKE +   HSEKLA AFG      G  +R++KNLRVC DCH+ 
Sbjct: 547 AGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTV 606

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KLISKV++ +IIVRDR R+H F++G CSC D+W
Sbjct: 607 MKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/634 (38%), Positives = 382/634 (60%), Gaps = 18/634 (2%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L T C  S ++LKQ HA + K+G   D  ++G L+   A S     + A ++F     P+
Sbjct: 11  LLTNCR-SLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPD 69

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVH 156
           VF+ N+++R   E + P   +  + EM    + P + F++  + KA +   + + G+Q+H
Sbjct: 70  VFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLH 129

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
              + +GL   + V ++ + MY+  G V  A+++ ++  + +V+ WNA++    +CGD++
Sbjct: 130 CQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVK 189

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
           GA  +F     +N  S+N M++G+ + G  E ARKLF EM  KD+++WS +I G+  +G+
Sbjct: 190 GADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGF 249

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           + EA   F E+Q+  ++P +  L+  L+ACA  GA++ G  +H  ++++       +  A
Sbjct: 250 FYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNA 309

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           L+D Y+KCG + MA  VFE M  K  + +W +MI GLAMHG  ++AI+LF +M+   +RP
Sbjct: 310 LLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRP 369

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D I F  +L AC+HAG+I++G +    M+ +Y I+P +EHYGC+VDL GRAG L +A E 
Sbjct: 370 DGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEF 429

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I  MP+ P A +W  LLGAC  HG V+  ER+ + L E++P N               + 
Sbjct: 430 IIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKW 489

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
            DVA +R+ M ++ +   PG SMI+V+ +++ F  G+  +   +E Y  LK+I+ KL++E
Sbjct: 490 KDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVE 549

Query: 562 G-YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           G Y P    VL DI++EEKE +   HSEKLA+AFG      G+ IR++KNLRVC DCH+ 
Sbjct: 550 GCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTV 609

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KLISKV+  +I+VRDR R+H F+ G CSC D+W
Sbjct: 610 MKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 364/623 (58%), Gaps = 56/623 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  HA +++ G  ++ +V+ +LV  +          AL        P    WN+++    
Sbjct: 43  RAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARAL--VGECDTP--VAWNALISG-- 96

Query: 110 EHNEPWRV---ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLC 165
            HN   R       + +M    + P   TY +V  AC     D   G+QVH  VV +G+ 
Sbjct: 97  -HNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVL 155

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            D+ V+                               NAL+D Y +C D+  A ++F   
Sbjct: 156 PDLRVE-------------------------------NALVDMYAECADMGSAWKVFDGM 184

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           + ++  S+ +++SG AR G+ +EAR LF+ M ++D ++W+A+IDGY     ++EALE+F 
Sbjct: 185 QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFR 244

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           EMQ   +   +F +  V+ ACA LGAL+ G W+  ++ R  I +DA +G AL+DMY+KCG
Sbjct: 245 EMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCG 304

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++ A  VF+ M  ++ FTW A+I GLA++G  ++AIE+F +M R    PD +TF  VL+
Sbjct: 305 SIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLT 364

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC HAG++D+G +    M + Y I P V HYGCI+DLLGRAG + EA + I  MPM PN+
Sbjct: 365 ACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNS 424

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            +W  LL ACR HG  E GE + + LLE++P+N               R +DV ++R  +
Sbjct: 425 TIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAI 484

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
            E+GIK  PG S+I+++G+IHEF  GD SHP  KEIY  L+ II  L   GY P+ ++V 
Sbjct: 485 MEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVF 544

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            ++ E+EK+    +HSEKLAIAF  +++ P   IR++KNLR+C DCH+A KLIS+++ R+
Sbjct: 545 VEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGRE 604

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           ++VRDR R+HHFR+G CSC D+W
Sbjct: 605 VVVRDRTRFHHFRHGFCSCKDYW 627


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/629 (39%), Positives = 371/629 (58%), Gaps = 54/629 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +S   ++  HA ++K G  ++ +V+ +LV  +A         AL   +   +    VWN+
Sbjct: 57  SSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARAL--LSERERDTPVVWNA 114

Query: 104 VLRACLEHNEPWR---VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHV 159
           ++     HN   R       + +M    + P   TY +V  AC     D   G+QVH  V
Sbjct: 115 LISG---HNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV 171

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           V +G+  D+ V+                               NAL+D Y +C D+E A 
Sbjct: 172 VGSGVLPDLRVE-------------------------------NALVDMYAECADMESAW 200

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           +LF   + ++  S+ +++SG  R GR +EAR LF  M ++D ++W+A+IDGY +   ++E
Sbjct: 201 KLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFRE 260

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           ALE+F EMQ   +   +F +  V+ ACA LGAL+ G W+  ++ R  I +DA +G AL+D
Sbjct: 261 ALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 320

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY+KCG ++ A  VF+DM  ++ FTW A+I GLA++G  ++AIE+F +M      PD +T
Sbjct: 321 MYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVT 380

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC HAG++D+G +    M++ Y I P V HYGCI+DL GRAG + EA + I  M
Sbjct: 381 FIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQM 440

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           PM PN+ +W  LL ACR HG  E GE + + LL+M+P+N               R +DV 
Sbjct: 441 PMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVR 500

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R  + E+GIK  PG S+I++NG+IHEF  GD SHP  KEIY  L+ II  L   GY P
Sbjct: 501 RLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFP 560

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           + ++V  ++ EEEK+    +HSEKLAIAF  ++++P   IR++KNLR+C DCH+A KLIS
Sbjct: 561 DVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLIS 620

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +++ R+++VRDR R+HHFR+G CSC D+W
Sbjct: 621 RLYGREVVVRDRTRFHHFRHGFCSCKDYW 649


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/624 (41%), Positives = 361/624 (57%), Gaps = 48/624 (7%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS-NFELALKVFNSVHKPNVFVWNSVLR 106
            +KQAHA IL  G   D  ++  L+   A S  S   + AL ++NS+  P VF  N+++R
Sbjct: 46  QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIR 105

Query: 107 ACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
             ++ + P   ISLYS M     + PNK T   V +ACS   A +EG QV  HV+K G  
Sbjct: 106 CFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFV 165

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV V+                               NALI  Y  C  +E AK++F   
Sbjct: 166 KDVFVR-------------------------------NALIHLYCTCCRVESAKQVFDEV 194

Query: 226 -KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              ++  S+N+MI GF R G+   A+KLF EM +KD I+W  II G  ++G  ++AL+ F
Sbjct: 195 PSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYF 254

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            E+   K++P + +L  +LAA A LG L+ G  IH         + A LGTALVDMYAKC
Sbjct: 255 KELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKC 314

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D +  +F+ M  K+ ++WN MI GLA HG   +A+ LF K   +   P  +TF  VL
Sbjct: 315 GCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVL 374

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+ AG++  G      M   YGI+PE+EHYGC+VDLL RAG++ +A E+I+ MP  P+
Sbjct: 375 TACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPD 434

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
             +W ++LG+C+ HG +E GE +G  L++M+P +              R+ +DV+K+R+L
Sbjct: 435 PVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRL 494

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M ER      G S+I+  G +H F  GD  H +  EIY ML+ +  ++   GYS N S V
Sbjct: 495 MAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSV 554

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L DI+EEEKE A K HSE+LAIAFG + T  G  IR+IKNLRVC DCH  +K+IS VF+R
Sbjct: 555 LHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFER 614

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +IIVRD  R+HHF+ G CSC D+W
Sbjct: 615 EIIVRDGSRFHHFKKGICSCQDYW 638


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/579 (41%), Positives = 351/579 (60%), Gaps = 54/579 (9%)

Query: 99  FVWNSVLRACLE-HNEPW----RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
           F+WN+++RA ++   +P       IS++  M     +P+  T+P + ++ +       G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            VHA +++ GL  D  V++S I MY+                                CG
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYS-------------------------------SCG 113

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           ++  A+++F      +  S+N++I+   + G  + AR LF  M +++ I+WS +I+GY +
Sbjct: 114 NLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVR 173

Query: 274 DGYYKEALEVFNEMQR---DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            G YKEAL +F EMQ    + ++P +F +S VLAAC  LGAL+ G W H ++ +  + VD
Sbjct: 174 CGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVD 233

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            VLGTAL+DMYAKCG ++ A  VF ++   K+V  W+AMI GLAMHG A++ + LF KM 
Sbjct: 234 VVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMI 293

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            + +RP+ +TF  V  AC H G++  G   L  M + Y I P ++HYGC+VDL GRAG +
Sbjct: 294 NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRI 353

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------- 499
            EA  V+ SMPMEP+  VW ALL   R HG++E  E   K L+E+EP N           
Sbjct: 354 KEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVY 413

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R +DV  +R LM+  GIK  PG S+I+V GV+HEF  GD SHP+ ++I++ML++I+
Sbjct: 414 AKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 473

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
           E+LK+EGY  N+ +VL D+DEE KE A   HSEKLA+A+GF+ T PG  IR++KNLR+C 
Sbjct: 474 ERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICR 533

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCH A K+ISKVF R+IIVRD  R+HHF  G CSC D+W
Sbjct: 534 DCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 50/314 (15%)

Query: 37  ILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           +L +    S  HL +  HA IL+ G   D +V  +L+  +++    N   A +VF+ + +
Sbjct: 70  LLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSC--GNLGFARQVFDEIPQ 127

Query: 96  P-------------------------------NVFVWNSVLRACLEHNEPWRVISLYSE- 123
           P                               NV  W+ ++   +   +    ++L+ E 
Sbjct: 128 PDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREM 187

Query: 124 -MVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
            M+GV D +PN+FT   V  AC    A + G   HA++ K G+  DV + ++ I MYA  
Sbjct: 188 QMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKC 247

Query: 182 GCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAM 236
           G V KA  +  + G   DV+ W+A+I G    G  E    LF    ++    N  ++ A+
Sbjct: 248 GSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAV 307

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDK 291
                  G   E +     M +   I      +  ++D Y + G  KEA  V   M    
Sbjct: 308 FCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM---P 364

Query: 292 IKPRKFVLSCVLAA 305
           ++P   V   +L+ 
Sbjct: 365 MEPDVLVWGALLSG 378



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 34/229 (14%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN--VFVWNSV 104
           +H K AHA I K G   D  +   L+  +A  +  + E A  VF+++  PN  V  W+++
Sbjct: 216 EHGKWAHAYIDKCGMPVDVVLGTALIDMYA--KCGSVEKATWVFSNL-GPNKDVMAWSAM 272

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG- 163
           +     H      + L+S+M+    +PN  T+  VF AC           VH  +V  G 
Sbjct: 273 ISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCAC-----------VHGGLVSEGK 321

Query: 164 -----LCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYL 210
                +  D  +  + IQ Y C        G + +A  ++     + DV+ W AL+ G  
Sbjct: 322 DYLRRMTEDYSIIPT-IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSR 380

Query: 211 KCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
             GDIE  +   K     +  N+G+Y  + + +A+ GR+E+ R + + M
Sbjct: 381 MHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLM 429


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 366/628 (58%), Gaps = 47/628 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T +  +KQ HA I+++G  Q  YV   L++             L VF  V+ PN F+W +
Sbjct: 53  TLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTA 112

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++R            + Y+ M      P  FT+  +FKAC        G QVHA      
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT---- 168

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                                     IL  G  SD+   N++ID Y+KCG +  A+++F 
Sbjct: 169 --------------------------ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              +++  S+  +I  +A++G  E A  LF+++  KD + W+A++ GY ++G  KEALE 
Sbjct: 203 EMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEY 262

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI--CVDAVLGTALVDMY 341
           F +MQ   ++  +  L+ V++ACA LGA+    WI D  +R+      + V+G+AL+DMY
Sbjct: 263 FQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY 322

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           +KCG  D A+KVFE MK + VF++++MI G AMHGRA  A++LF  M + ++RP+++TF 
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +LSAC+HAG++++G Q    M++ +G+ P  +HY C+VDLLGRAG L EA +++ +MPM
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EPN  VW ALLGACR HG  +  +     L ++EP                 R ++V+K+
Sbjct: 443 EPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKL 502

Query: 508 RKLMKERGIKTNPGSSMID-VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           RK+++E+G K NPG S  +  NG IH+F  GD +HP+  EI   LK++IE+L+  GY PN
Sbjct: 503 RKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPN 562

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
                +D+ ++EKE     HSEKLA+A+G + T+ G TI+++KN+R+CEDCH+     S+
Sbjct: 563 LGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASE 622

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  R+IIVRD +R+HHF NG CSC +FW
Sbjct: 623 ITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F ++Q  + K  ++ L  +L  C     + Q   +H H+ RN +   + + T L+ M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCTLFSQIKQ---VHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 344 CGRLDMAWK--VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
                 ++   VF  +     F W AMI G A+ G   ++   + +M+R+ + P   TF+
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +  AC  A  +D G Q       + G   ++     ++DL  + G+L  A +V   M  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS- 205

Query: 462 EPNAAVWEALLGACRKHGEVE 482
           E +   W  L+ A  K+G++E
Sbjct: 206 ERDVVSWTELIVAYAKYGDME 226


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 385/650 (59%), Gaps = 47/650 (7%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA+ +K+       VS  L+  +A+ R +N + A  +F+ + +P +  WN +++  +E
Sbjct: 33  QLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIE 92

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      I+L+ +++  D  P+ FT P V K C+   A +EG Q+H  V+K G   D  V
Sbjct: 93  NQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFV 151

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-- 228
            SS + MY+  G +   R++ D     DV+ WN+LIDGY +CG+IE A E+F+   +K  
Sbjct: 152 LSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDS 211

Query: 229 -----------------------------NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
                                        N+ S+NAMI+G+ + G    A++LF++M ++
Sbjct: 212 FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER 271

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
             +TW+++I GY ++  + +AL++F  M R+ I P    +   ++A + + +L  G W+H
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVH 331

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            ++ ++    D VLGT L++MY+KCG +  A +VF  +  K++  W ++I GL MHG  +
Sbjct: 332 SYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVE 391

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
             +ELF +M R  ++P  ITF  VL+AC+HAG  +   +    M   YGI P +EHYGC+
Sbjct: 392 QTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCL 451

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           +D+L RAG+L EA++ I  MP++ N  +W +LL   RKHG +  GE   + L+++ P   
Sbjct: 452 IDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTT 511

Query: 500 RC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
            C              + V ++R++MK++G+K +PG S I+  G IHEF  GD SHPQ +
Sbjct: 512 GCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTE 571

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE-EKETAPKYHSEKLAIAFGFINTDPGAT 604
           EIY+ L ++ +KL + G+ P+++QVL  ++E+ EKE   + HSE+LAIAFG +N   G+ 
Sbjct: 572 EIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSP 631

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IR+IKNLR+C DCH+ TKL+S ++ R+II+RD  R+HHF++G CSC DFW
Sbjct: 632 IRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 367/631 (58%), Gaps = 58/631 (9%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  HL Q HA +L+ G      ++  L + +A+    +   ++ +F+    PNVF+W  +
Sbjct: 35  STHHLLQIHAALLRRGLHHHPILNFKLQRSYAS--LGHLHHSVTLFHRTPNPNVFLWTHI 92

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + A    +     +S YS+M+    +PN FT  ++ KAC++  A      VH+H +K GL
Sbjct: 93  INAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPAR----AVHSHAIKFGL 148

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
              ++V +                                L+D Y + GD+  A++LF +
Sbjct: 149 SSHLYVST-------------------------------GLVDAYARGGDVASAQKLFDA 177

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             +++  SY AM++ +A+ G   EAR LF  M  KD + W+ +IDGY + G   EAL  F
Sbjct: 178 MPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFF 237

Query: 285 NEMQRD-------KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            +M          K++P +  +  VL++C  +GAL+ G W+H +V+ N I V+  +GTAL
Sbjct: 238 RKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTAL 297

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMY KCG L+ A KVF+ M+ K+V  WN+MI G  +HG +D+A++LF +M    ++P  
Sbjct: 298 VDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSD 357

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           ITF  VL+ACAHAG++ +G +    M+  YG++P+VEHYGC+V+LLGRAG + EA +++ 
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVR 417

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE--------------MEPQNRRCDD 503
           SM +EP+  +W  LL ACR H  V  GE + +IL+               M    R    
Sbjct: 418 SMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVG 477

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           VAK+R +MK  G++  PG S I+V   +HEF  GD  HP+ K+IY ML+K+   LK   Y
Sbjct: 478 VAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHY 537

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
           +P +  VL DI E+EKE + + HSEKLA+AFG I+T PGA I+++KNLRVC DCH+  K+
Sbjct: 538 TPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKI 597

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +SK+  R II+RDR R+HHF NG CSC D+W
Sbjct: 598 MSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 357/585 (61%), Gaps = 48/585 (8%)

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS---LYSEMVGVDSKPNKFTYPTVFKAC 143
           L +  +   P VF++N+ +R       P  ++S   L+  M  +   PN FT+  +F+ C
Sbjct: 43  LLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGC 102

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           S   A   G Q H  V+KN    DV V++S I+ Y+                        
Sbjct: 103 SNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSV----------------------- 139

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
                   CG +  A+ +F  + + +  S+N+MI G  R G   EA  LF++M ++++I+
Sbjct: 140 --------CGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDIS 191

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+ +I GY ++G  KEAL +F EMQ    +P   +L  VL+AC+ LGALD G W+H ++ 
Sbjct: 192 WNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIG 251

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +  + VD++L  AL+DMYAKCG +D+A + F   + ++V  + A I GLAM+G +++A++
Sbjct: 252 KKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQ 311

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF +M+ E + PD +++  VL AC+HAG +++G      M  ++GI PE++HY C+VDLL
Sbjct: 312 LFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLL 371

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME-------- 495
           GRAG L EAE+ ++SMP++P+  +W ALLGACR +G  E G+R+G +L+E +        
Sbjct: 372 GRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYI 431

Query: 496 ------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                  ++ + +D  ++RK M+ R +   PG S+I+V G +HEF +GD SH + +EIYL
Sbjct: 432 LLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYL 491

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
           M ++I++++K  GY   +  V+FD++EEEKE    +HSEKLA+AFGF+ T  G+T+R++K
Sbjct: 492 MWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVK 551

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           N+R+C DCH A KL+SKVFKR I +RDR  +HHF  G CSC D+W
Sbjct: 552 NIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 12/246 (4%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  N   AL +F+ + + N   WN ++    ++ +P   ++L+ EM  +D +PN     +
Sbjct: 170 RNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVS 229

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  ACS   A   G  VH ++ K  +  D  + ++ I MYA  G ++ A Q      K D
Sbjct: 230 VLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRD 289

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
           V  + A I G    G  E A +LF+  K +       SY A++   +  G  E+    F 
Sbjct: 290 VSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFA 349

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M+D   I      ++ ++D   + G  +EA +    M    IKP   +   +L AC   
Sbjct: 350 SMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASM---PIKPDNVIWGALLGACRVY 406

Query: 310 GALDQG 315
           G  + G
Sbjct: 407 GNAEMG 412


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 367/628 (58%), Gaps = 47/628 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T +  +KQ HA I+++G  Q  YV   L++             L VF  V+ PN F+W +
Sbjct: 53  TLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTA 112

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++R            + Y+ M      P  FT+  +FKAC        G QVHA      
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHA------ 166

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                                   + IL  G  SD+   N++ID Y+KCG +  A+++F 
Sbjct: 167 ------------------------QTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD 202

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              +++  S+  +I  +A++G  E A  LF+++  KD + W+A++ GY ++G  KEALE 
Sbjct: 203 EMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEY 262

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI--CVDAVLGTALVDMY 341
           F +MQ   ++  +  L+ V++ACA LGA+    WI D  +R+      + V+G+AL+DMY
Sbjct: 263 FQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY 322

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           +KCG  D A+KVFE MK + VF++++MI G AMHGRA  A++LF  M + ++RP+++TF 
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +LSAC+HAG++++G Q    M++ +G+ P  +HY C+VDLLGRAG L EA +++ +MPM
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EPN  VW ALLGACR HG  +  +     L ++EP                 R ++V+K+
Sbjct: 443 EPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKL 502

Query: 508 RKLMKERGIKTNPGSSMID-VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           RK+++E+G K NPG S  +  NG IH+F  GD +HP+  EI   LK++IE+L+  GY PN
Sbjct: 503 RKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPN 562

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
                +D+ ++EKE     HSEKLA+A+G + T+ G TI+++KN+R+CEDCH+     S+
Sbjct: 563 LGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASE 622

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  R+IIVRD +R+HHF NG CSC +FW
Sbjct: 623 ITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F ++Q  + K  ++ L  +L  C     + Q   +H H+ RN +   + + T L+ M  K
Sbjct: 31  FPQLQHQR-KLLEWRLMSILHDCTLFSQIKQ---VHAHIIRNGLSQCSYVLTKLIRMLTK 86

Query: 344 CGRLDMAWK--VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
                 ++   VF  +     F W AMI G A+ G   ++   + +M+R+ + P   TF+
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +  AC  A  +D G Q       + G   ++     ++DL  + G+L  A +V   M  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS- 205

Query: 462 EPNAAVWEALLGACRKHGEVE 482
           E +   W  L+ A  K+G++E
Sbjct: 206 ERDVVSWTELIVAYAKYGDME 226


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 345/572 (60%), Gaps = 49/572 (8%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA----DKEGVQVHA 157
           ++++RA      P   + LY+ ++     P   T P++ K+ +++ A     +  + VHA
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           H V+ GL G + V ++ I+++A                                 G +  
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGL------------------------------LGRLAD 146

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A  L +++   +  ++N +I+  AR GR  +AR LF+EM +++ ++WSA+++GY + G  
Sbjct: 147 AHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDG 206

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EAL VF++MQ   ++P   VL  VLAACA LGAL+QG W+H ++K N+I +   LGTAL
Sbjct: 207 REALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTAL 266

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMYAKCG + +  +VFE MK K V  W  MI GLAMHGR  D++ LF +M+   ++PD 
Sbjct: 267 VDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDD 326

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           I F   L AC H G++D+G +    M   YGI P++EHYGC+VDLL R G L+EA +++ 
Sbjct: 327 IAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVE 386

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
            MPM+P+A +W AL+  CR H  VE  E + K  +E+EP                 R   
Sbjct: 387 KMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHAS 446

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM-EG 562
             ++R LM+E+G++  PG S +++ GVIH+F  GD SHP++K+I     +I  ++++ EG
Sbjct: 447 AREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEG 506

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+  +VL DI+EEE E+A   HSEKLAIAF  I+T+    IR++KNLRVC+DCH  TK
Sbjct: 507 YVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTK 566

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LISKV+ R+IIVRDR R+H F++G CSC D+W
Sbjct: 567 LISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 113/267 (42%), Gaps = 15/267 (5%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L  AH ++L++    D     TL+  HA  R      A  +F+ + + N   W++++   
Sbjct: 144 LADAH-LLLRTSAAVDASTFNTLITAHA--RAGRVADARSLFDEMPERNAVSWSAMVNGY 200

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           ++  +    + ++S+M     +P+      V  AC+   A ++G  VH ++  N +   V
Sbjct: 201 VQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTV 260

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + ++ + MYA  G V    ++ +     +V+ W  +I G    G    +  LF   +  
Sbjct: 261 FLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESS 320

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
                  ++   +      G  ++ R+LFN M +   I      +  ++D   ++G   E
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSE 380

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           A ++  +M    +KP   +   ++A C
Sbjct: 381 ARDMVEKM---PMKPDALIWGALMAGC 404


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 369/624 (59%), Gaps = 55/624 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACS 144
           A  VF      +V  WNS+LRA +  N P R +  Y+EM+      P++FT+P++ K C+
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           +    K G  +H  VVK  L  D++++++ + MYA  G +  AR + +     + + W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 205 LIDGYLKCGDIEGAKELFKST----------------------KDKNTGSY--------- 233
           +I GY+K      A  L+K                        KD   G           
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 234 --------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                   +A+++ +A+ G  + AR++F++++DKD   WSA+I GY K+    EAL++F 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 286 EMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           E+     ++P +  +  V++ACA LG L+ G W+HD++ R        L  +L+DM++KC
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A ++F+ M  K++ +WN+M+ GLA+HG   +A+  F  MQ   ++PD ITF  VL
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVL 390

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+HAG++  G +    ++ +YG+  + EHYGC+VDLL RAG LAEA E I  MP++P+
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------RR--CDDVAKMRKL 510
            A+W ++LGACR +  +E GE   + LLE+EP N            RR   ++V K+R+L
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVREL 510

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M E+GI+  PG S + ++ + H F  GD SHP++ EI +ML+++ EKLK+ GY  ++S+V
Sbjct: 511 MNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEV 570

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L +ID+ +KE +   HSEKLA+ +G + ++ G  I ++KNLRVC DCH+  KL+SK+++R
Sbjct: 571 LLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQR 630

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I +RDR R+HHF++G CSC D+W
Sbjct: 631 QITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 114/248 (45%), Gaps = 13/248 (5%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTY 136
           ++  + + A +VF+ +   +V+ W++++   +++N     + L+ E+  G + +PN+ T 
Sbjct: 226 AKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTI 285

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
             V  AC+     + G  VH ++ +      V + +S I M++  G ++ A++I D  S 
Sbjct: 286 LAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKL 252
            D+I WN++++G    G    A   F   +  +      ++  +++  +  G  +E +KL
Sbjct: 346 KDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405

Query: 253 FNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           F E+     +      +  ++D   + G   EA E    M    ++P   +   +L AC 
Sbjct: 406 FYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM---PLQPDGAIWGSMLGACR 462

Query: 308 SLGALDQG 315
               L+ G
Sbjct: 463 VYNNLELG 470



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 86/193 (44%), Gaps = 17/193 (8%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S+  + + A ++F+S+   ++  WNS++     H      ++ +  M   D +P++ T+ 
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFI 387

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQI 190
            V  ACS     +EG ++   +    L G V +KS   + Y C        G + +AR+ 
Sbjct: 388 GVLTACSHAGLVQEGKKLFYEI--EALYG-VRLKS---EHYGCMVDLLCRAGLLAEAREF 441

Query: 191 LDDGS-KSDVICWNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRF 246
           +     + D   W +++       ++E  +E  +     +  N G Y  + + +AR   +
Sbjct: 442 IRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMW 501

Query: 247 EEARKLFNEMNDK 259
            E +K+   MN+K
Sbjct: 502 NEVKKVRELMNEK 514


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/632 (38%), Positives = 380/632 (60%), Gaps = 72/632 (11%)

Query: 41  KCHTSWQHLKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
           KCH +   LKQ HA +L +G  FQ +Y+S  L   + +S+F++   A  +FN +  P +F
Sbjct: 14  KCH-NLNTLKQVHAQMLTTGLSFQTYYLSHLL---NTSSKFAS-TYAFTIFNHIPNPTLF 68

Query: 100 VWNSVLRACLEHNEPWRV-ISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHA 157
           ++N+++ +   H++   +  SLY+ ++   + +PN FT+P++FKAC+     + G  +HA
Sbjct: 69  LYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHA 128

Query: 158 HVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           HV+K      D  V++S +  YA +G +  +R + D  S+ D+  WN ++  Y      +
Sbjct: 129 HVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAY-----AQ 183

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A  +  ST                    FE+A                           
Sbjct: 184 SASHVSYSTS-------------------FEDADMSL----------------------- 201

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EAL +F +MQ  +IKP +  L  +++AC++LGAL QG W H +V RN++ ++  +GTA
Sbjct: 202 --EALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTA 259

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMY+KCG L++A ++F+++  ++ F +NAMIGG A+HG  + A+EL+  M+ E + PD
Sbjct: 260 LVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPD 319

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             T    + AC+H G+++ GL+    M+ ++G++P++EHYGC++DLLGRAG L EAEE +
Sbjct: 320 GATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERL 379

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MPM+PNA +W +LLGA + HG +E GE   K L+E+EP+                R +
Sbjct: 380 QDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWN 439

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DV ++R LMK+ G+   PG S++++NG +HEF TGD +HP  KEIY  + +I  +L   G
Sbjct: 440 DVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYG 499

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + P +S+VLFD++EE+KE    YHSE+LAIAF  I +     IR+IKNLRVC DCH+ TK
Sbjct: 500 HKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITK 559

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LIS  ++RDIIVRDR R+HHF++G CSC D+W
Sbjct: 560 LISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/714 (35%), Positives = 396/714 (55%), Gaps = 93/714 (13%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH-YVSGTLVKCHANSRF 80
           +N P   F  K+ + +L T C+T ++ + Q H+  +K+G   +H +++  ++ C      
Sbjct: 27  SNTPLHSFV-KSPISLLET-CNTMYE-INQIHSQTIKTGLSSNHLFLTKVIIFC-CTKES 82

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            +   A KVF+ + +P+VF+WN++++     N     +SLY  M+  + KP+ FT+P + 
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 141 KACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
           K  +   A K G  +  H V +G L  ++ V+   I +++  G VN AR+I D G   +V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDK------------------------------- 228
           + WN ++ GY +    E +K LF   + K                               
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 229 -----------NTGSYNAMISGFARFGRFEEARKLFNEMN-------------------- 257
                      N    NA+I  FA  G  + AR +F+EM                     
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322

Query: 258 -----------DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
                      ++D ++W+A+IDGY +   +KE L +F +MQ   +KP +F +  +L AC
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A LGAL+ G W   ++ +N I  D  +G AL+DMY KCG ++ A K+F +M+ K+ FTW 
Sbjct: 383 AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWT 442

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI GLA +G  ++A+ +F  M    + PD IT+  V+ AC H G++ +G    + M   
Sbjct: 443 AMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQ 502

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           +GI P + HYGC+VDLLGRAG+L EA EVI +MP++PN+ VW +LLGACR H  V+  E 
Sbjct: 503 HGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEM 562

Query: 487 LGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
               +LE+EP+N              ++  ++  +RK+M ERGIK  PG S++++NG+++
Sbjct: 563 AANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVY 622

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EF  GD SHPQ KEIY  L+ + + L   GYSP++S+V  D+ EE+KETA   HSEKLAI
Sbjct: 623 EFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAI 682

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           A+  I++  G TIR++KNLR+C DCH    ++SKV+ R++IVRD+ R+HHFR+G
Sbjct: 683 AYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/687 (36%), Positives = 388/687 (56%), Gaps = 63/687 (9%)

Query: 24  IPTSEFSQKTILD-ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           IP S F   +    +L+   H   +HL Q HA ++ SG  +    SG LV    N+ ++ 
Sbjct: 63  IPYSGFDFDSFFSSLLDHSVHK--RHLNQIHAQLVVSGLVE----SGFLVTKFVNASWNI 116

Query: 83  FEL--ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            E+  A KVF+   +P+VF+WN+++R    HN     I +YS M      P+ FT P V 
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           KACS     + G +VH  + + G   DV V++  + +YA  G V +AR + +     +++
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV 236

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTG-----------SYN--------------- 234
            W ++I GY + G    A  +F   + +N             +Y                
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296

Query: 235 -------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                        ++ + +A+ G+   AR  F++M   + + W+A+I GY K+GY  EA+
Sbjct: 297 VKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAV 356

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F EM    I+     +   + ACA +G+LD   W+ D++ +     D  + TAL+DM+
Sbjct: 357 GLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMF 416

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +D+A +VF+    K+V  W+AMI G  +HGR  DAI+LF+ M++  + P+ +TF 
Sbjct: 417 AKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFV 476

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +L+AC H+G+++ G + L +  + YGI+   +HY C+VDLLGR+G+L EA + I++MP+
Sbjct: 477 GLLTACNHSGLVEEGWE-LFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPI 535

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EP  +VW ALLGAC+ +  V  GE   + L  ++P N              R  D VAK+
Sbjct: 536 EPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKV 595

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R LM+E+G+  + G S+I++NG +  FR GD SHP+ KEI+  L+ +  +LK  G+ P+ 
Sbjct: 596 RILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHI 655

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
             VL D+++EEKE     HSE+LAIA+G I+T PG T+R+ KNLR C +CHSATKLISK+
Sbjct: 656 ESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKL 715

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 716 VNREIVVRDANRFHHFKNGVCSCRDYW 742


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/658 (37%), Positives = 384/658 (58%), Gaps = 57/658 (8%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           I    IP    + +T   +LN +   S   L+Q HA ++      +  ++ +L+ C+  +
Sbjct: 62  IPTNPIPIDLPNPQTFSLLLNQRPKLS--PLQQIHAQVVTQALSSNASLTASLIHCYLCA 119

Query: 79  RFSNFELALKVFNSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK----PN 132
           +  N   A  +F+    P+  + +WN ++R   +       I L+  M+ +D      P+
Sbjct: 120 K--NHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPD 177

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           ++T+  V  +CS   +   G  VH  VVK+G   +++V +S I M + F  +  AR++ +
Sbjct: 178 EYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFN 237

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
             S+ DV                                S+ +++ G+A+ G  + A +L
Sbjct: 238 QMSERDVF-------------------------------SWTSLLGGYAKHGEMDRACEL 266

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVF-NEMQRDKIKPRKFVLSCVLAACASLGA 311
           FN M  +++++W+ +I G+   G Y EAL  F N +  D++ P + VL CVL+ACA LGA
Sbjct: 267 FNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 326

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           LDQG WIH ++ +  I   + + TAL+DMYAKCGR+D A +VF  +  ++V ++ +MI G
Sbjct: 327 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISG 386

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
           L+ HG   DA+ +F++M  E + P+ IT   VL+ C+H+G+++ G   L  M+ ++GI P
Sbjct: 387 LSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAP 446

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL---- 487
           ++EHYGC +DLLGRAGYL  A EV+ +MPMEP+  +W ALL A R H  V  GE++    
Sbjct: 447 KIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHI 506

Query: 488 ----------GKILLE-MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
                     G++LL  +     R + V +MRKLM +R  +++PG S I+VNG++HEFR 
Sbjct: 507 GQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRV 566

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D  HPQ+ EI   L +I+++L   GYS N+ QV FD++EEEKE A  +HSEKLAIAFG 
Sbjct: 567 ADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGL 626

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T+PG  IR++KNLR CEDCHSA K IS+V+ R+I+VRDR R+H F  G CSC DFW
Sbjct: 627 MSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/633 (36%), Positives = 377/633 (59%), Gaps = 17/633 (2%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L +KC  S + +KQ  A+I K+       VSG L+   A +   +   A ++F  +  P+
Sbjct: 11  LFSKC-KSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPD 69

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVH 156
           VF++N+++R   + + P   + L+ EM     + P+ F++  + KA +   A   G+Q+H
Sbjct: 70  VFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLH 129

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
              V  GL   + V ++ I MYA   C+  AR++ D+  + +++ WNA++    +C  ++
Sbjct: 130 CLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVK 189

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A+++F+    +N  S+N M++G+ + G  + AR++F +M  KD+++WS +I G+  +G 
Sbjct: 190 DAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGN 249

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           + +A   F E++R+ ++P +  L+ VL+ACA  GA + G  +H  V+++       +  A
Sbjct: 250 FNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNA 309

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+D Y+KCG LDMA  VF++M  +   +W AMI G+AMHG  ++AI LF +M+   ++PD
Sbjct: 310 LIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPD 369

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  +L AC+HAG++D G    + M   YGI+P +EHYGC+VDL GRAG L +A + +
Sbjct: 370 SITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFV 429

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP+ PN  VW  LLGAC  HG +    ++ + L E++P+N               +  
Sbjct: 430 CQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWK 489

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME- 561
           DVA +R+ M  + +K  PG SMI+VN +I+ F  G+  +    E +  L++I+ +L++E 
Sbjct: 490 DVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEG 549

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY P    VL DI+ EEKE +   HSEKLA+AFG      G  IRV+KNLR+C DCH+  
Sbjct: 550 GYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVM 609

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLISKV++ +I+VRDR R+H F +G CSC D+W
Sbjct: 610 KLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 343/577 (59%), Gaps = 49/577 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG---- 152
           +V + ++++RA      P   + LY+ ++     P   T P++ K+ +++ A        
Sbjct: 36  SVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLA 95

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           + VH H VK GL   V V ++ I+++A F                      +L DG L  
Sbjct: 96  LTVHTHAVKLGLDRFVLVSNALIRVHAGF--------------------LGSLADGLL-- 133

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                   L ++    +  ++N +I+ +AR GR  +AR LF+EM  ++ ++WSA+++GY 
Sbjct: 134 --------LLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           + G  +EAL +F  MQ + ++P   VL  VLAACA  GAL+QG W+H ++K + I ++  
Sbjct: 186 QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLF 245

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
            GTALVDMY+KCG + +A  VFE M+ K V  W  MI GLAMHGR  +A+ LF +M+   
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           +RPD I F  VL AC HAG++D+G +    M + YGI P++EHYGC+VDLL R G+L EA
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
           +E+I  MPMEP+A +W AL+  CR H  VEF E + K  + +EP                
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAAS 425

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            R     ++R LM+E+G+   PG S ++VNGVIH+F  GD SHP++K+I     +I  ++
Sbjct: 426 GRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRI 485

Query: 559 KM-EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ EGY P+  +VL DI+EEEKE A   HSEKLAIAF  I+      IR+ KNLRVC DC
Sbjct: 486 RLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDC 545

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H  TKLISKV+ R+I+VRDR R+H F+ G CSC D+W
Sbjct: 546 HHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 137/320 (42%), Gaps = 21/320 (6%)

Query: 55  VILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           ++L++    D     TL+  +A  R      A  +F+ +   N   W++++   ++  + 
Sbjct: 133 LLLRTAAAVDASTFNTLITAYA--RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDG 190

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
              + +++ M   D +P+      V  AC+   A ++G  VH ++  +G+  ++   ++ 
Sbjct: 191 REALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTAL 250

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG--- 231
           + MY+  G V  A  + +     +V+ W  +I G    G    A  LF   +        
Sbjct: 251 VDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDD 310

Query: 232 -SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFN 285
            ++  ++      G  ++ R+LF+ M  K  I      +  ++D   ++G+  EA E+  
Sbjct: 311 IAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQ 370

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYA 342
           +M    ++P   +   ++A C       + +   ++V ++ I ++     A V   ++YA
Sbjct: 371 KM---PMEPDALIWGALMAGC----RFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYA 423

Query: 343 KCGRLDMAWKVFEDMKMKEV 362
             GR   A ++   M+ K V
Sbjct: 424 ASGRHASAREIRHLMREKGV 443


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/626 (37%), Positives = 363/626 (57%), Gaps = 47/626 (7%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           +++ ++Q HA +   G  +D ++ G  VK  A S     + A ++ +   KP +F  NS+
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77

Query: 105 LRACLEHNEPWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +RA  +   P +    Y  ++  G D KP+ +T   + +AC+     + G+QVH   ++ 
Sbjct: 78  IRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRR 137

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G   D HV++  I +YA  GC++   ++ +     D +C  A++    +CGD+     +F
Sbjct: 138 GFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDV-----VF 192

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                     ARKLF  M ++D I W+A+I GY + G  +EAL 
Sbjct: 193 --------------------------ARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           VF+ MQ + +K     +  VL+AC  LGALDQG W H +++RN I +   L T LVD+YA
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYA 286

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG ++ A +VF  M+ K V+TW++ + GLAM+G  +  +ELF  M+++ + P+ +TF  
Sbjct: 287 KCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVS 346

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL  C+  G +D G +    M+  +GI+P++EHYGC+VDL  RAG L +A  +I  MPM+
Sbjct: 347 VLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMK 406

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMR 508
           P+AAVW +LL A R +  +E G    K +LE+E  N                 D+V+ +R
Sbjct: 407 PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVR 466

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           + MK +G++  PG S+++VNG +HEF  GD SHP+  +I  + K I  +L++ GY  +++
Sbjct: 467 QSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTT 526

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            V+FDIDEEEKE A   HSEK AIAFG ++      IR++KNLRVC DCH  + +ISK+F
Sbjct: 527 PVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIF 586

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+IIVRDR R+HHF++G CSCN FW
Sbjct: 587 NREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/658 (39%), Positives = 375/658 (56%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  I+KS   Q+ +V   L+  H        + A  VF+++ K +   WN+++   +
Sbjct: 48  KQVHDCIIKSRMEQNAHVMNNLL--HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYV 105

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           EH      + L+ EM     +PN  TY  + KAC+   A K G +VHA +   GL  DV 
Sbjct: 106 EHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVR 165

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ ++MY   G +N+AR+I D+    D+I W  +I  Y + G+ + A  L    + + 
Sbjct: 166 VGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEG 225

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                    A++  +A+ G  ++AR
Sbjct: 226 FKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDAR 285

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+ M  +D ++W+ +I  + + G   EA ++F +MQ +  KP   +   +L ACAS G
Sbjct: 286 VVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAG 345

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL+    IH H   + + VD  +GTALV MY+K G +D A  VF+ MK++ V +WNAMI 
Sbjct: 346 ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMIS 405

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG   DA+E+F +M    ++PDR+TF  VLSAC+HAG++D G      M Q+YGI+
Sbjct: 406 GLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIE 465

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P+V H  C+VDLLGRAG L EA+  I +M ++P+ A W ALLG+CR +G VE GE + K 
Sbjct: 466 PDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKE 525

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            L+++P+N               + D V+ +R +M+ERGI+  PG S I+V+  IH+F  
Sbjct: 526 RLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLV 585

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D SHP+ KEI     K+IEK+K EGY P++  VL + + ++KE     HSEKLAI +G 
Sbjct: 586 ADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGL 645

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T PG  IRV KNLRVC DCH ATKLISKV  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 646 MHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 53/393 (13%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + F Y  V K C   +      QVH  ++K+ +  + HV ++ + +Y   G + +AR + 
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----KDKNTGSY-------------- 233
           D   K     WNA+I GY++    E A  LF+         N G+Y              
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 234 ---------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                 A++  + + G   EAR++F+ + + D I+W+ +I  Y 
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           + G  KEA  +  +M+++  KP       +L ACAS GAL     +H H     + +D  
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +GTALV MYAK G +D A  VF+ MK+++V +WN MIG  A HGR  +A +LF +MQ E 
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG 326

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGRA 446
            +PD I F  +L+ACA AG       AL ++++++      G++ +V     +V +  ++
Sbjct: 327 CKPDAIMFLSILNACASAG-------ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKS 379

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G + +A  V   M +  N   W A++    +HG
Sbjct: 380 GSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 19/226 (8%)

Query: 279 EALEVF-NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           EA+ V  N +QR  I    F+   VL  C     L     +HD + ++ +  +A +   L
Sbjct: 11  EAIVVLMNRLQRGLITD-SFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + +Y +CGRL  A  VF+ +  K   +WNAMI G   H  A+DA+ LF +M  E ++P+ 
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNA 129

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGRAGYLAE 451
            T+  +L ACA        L AL + ++++      G++ +V     ++ + G+ G + E
Sbjct: 130 GTYMIILKACA-------SLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINE 182

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           A  +  ++ M  +   W  ++GA  + G    G+   +++L+ME +
Sbjct: 183 ARRIFDNL-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQE 224


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/658 (37%), Positives = 366/658 (55%), Gaps = 55/658 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K  H+ IL +GH  D  V   LVK +A  +  +++   +VF  +   ++  WN+++    
Sbjct: 365  KTVHSHILNAGHESDLAVGTALVKMYA--KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            E         +Y +M      PNK TY  +  AC    A   G ++H+ VVK+G   D+ 
Sbjct: 423  EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
            V+++ I MYA  G +  AR + +   + D+I W A+I G  K G    A  +F+  +   
Sbjct: 483  VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542

Query: 229  ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
               N  +Y                                   N +++ ++  G  ++AR
Sbjct: 543  LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDAR 602

Query: 251  KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            ++F+ M  +D + ++A+I GY      KEAL++F+ +Q + +KP K     +L ACA+ G
Sbjct: 603  QVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662

Query: 311  ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +L+    IH  V ++    D  LG ALV  YAKCG    A  VF+ M  + V +WNA+IG
Sbjct: 663  SLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIG 722

Query: 371  GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
            G A HGR  D ++LF +M+ E ++PD +TF  +LSAC+HAG+++ G +    M + +GI 
Sbjct: 723  GCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGIT 782

Query: 431  PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            P +EHYGC+VDLLGRAG L E E +I +MP + N  +W ALLGACR HG V   ER  + 
Sbjct: 783  PTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES 842

Query: 491  LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
             L+++P N                 D  AK+RKLM++RG+   PG S I+V   +H F  
Sbjct: 843  SLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVA 902

Query: 537  GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
             D SHP+ ++IY  L K+   +KMEGY P++  V+ D+DE EKE A  +HSE+LAIA+G 
Sbjct: 903  EDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGL 962

Query: 597  INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I+T PG  IR+ KNLRVC DCH+ATK I+K+  R+I+ RD  R+HHF++G CSC D+W
Sbjct: 963  ISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 235/504 (46%), Gaps = 52/504 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVLRA 107
           ++ H  I++     D Y    L+  +   +  + E A +V+N ++  +  V  WN+++  
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINMYI--QCGSIEEARQVWNKLNHTERTVHSWNAMVVG 218

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +++      + L  EM        + T   +  +C    A + G ++H   +K  L  D
Sbjct: 219 YVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFD 278

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           V+V +  + MYA  G +++AR++ D      V+ W  +I GY  CG  E A E+F+  + 
Sbjct: 279 VNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQ 338

Query: 228 K----NTGSY-----------------------------------NAMISGFARFGRFEE 248
           +    N  +Y                                    A++  +A+ G +++
Sbjct: 339 EGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKD 398

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            R++F ++ ++D I W+ +I G  + G ++EA E++++MQR+ + P K     +L AC +
Sbjct: 399 CRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVN 458

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
             AL  G  IH  V ++    D  +  AL+ MYA+CG +  A  +F  M  K++ +W AM
Sbjct: 459 PTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAM 518

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY- 427
           IGGLA  G   +A+ +F  MQ+  ++P+R+T+  +L+AC+    +D G +     QQ+  
Sbjct: 519 IGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR---IHQQVIE 575

Query: 428 -GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            G+  +      +V++    G + +A +V   M  + +   + A++G    H     G+ 
Sbjct: 576 AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAH---NLGKE 631

Query: 487 LGKILLEMEPQNRRCDDVAKMRKL 510
             K+   ++ +  + D V  +  L
Sbjct: 632 ALKLFDRLQEEGLKPDKVTYINML 655



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 147/598 (24%), Positives = 260/598 (43%), Gaps = 112/598 (18%)

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           ++ N   Y  + K C   +    G +VH H++++    D +  ++ I MY   G + +AR
Sbjct: 137 ARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEAR 196

Query: 189 QILD--DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------------------ 228
           Q+ +  + ++  V  WNA++ GY++ G IE A +L +  +                    
Sbjct: 197 QVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKS 256

Query: 229 ---------------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                                +    N +++ +A+ G   EAR++F++M  K  ++W+ I
Sbjct: 257 PSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTII 316

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I GY   G+ + A E+F +MQ++ + P +     VL A +   AL  G  +H H+     
Sbjct: 317 IGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGH 376

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             D  +GTALV MYAKCG      +VFE +  +++  WN MIGGLA  G  ++A E++ +
Sbjct: 377 ESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQ 436

Query: 388 MQREKMRPDRITFACVLSACA-----HAG------------MIDRGLQ-ALTYMQQMYG- 428
           MQRE M P++IT+  +L+AC      H G            M D  +Q AL  M    G 
Sbjct: 437 MQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGS 496

Query: 429 -----------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEALLGA 474
                      +  ++  +  ++  L ++G  AEA  V   M    ++PN   + ++L A
Sbjct: 497 IKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNA 556

Query: 475 CRKHGEVEFGERLGKILLE------------MEPQNRRCDDVAKMRKL---MKERGIKTN 519
           C     +++G R+ + ++E            +      C  V   R++   M +R I   
Sbjct: 557 CSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI--- 613

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI----D 575
                +  N +I     G  +H   KE      K+ ++L+ EG  P+    +  +    +
Sbjct: 614 -----VAYNAMI----GGYAAHNLGKEAL----KLFDRLQEEGLKPDKVTYINMLNACAN 660

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
               E A + HS  L +  G++ +D      ++     C     A  +  K+ KR++I
Sbjct: 661 SGSLEWAKEIHS--LVLKDGYL-SDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVI 715



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 8/209 (3%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A++V   +Q+   +        +L  C  +  L  G  +H+H+ ++   +D     AL++
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 340 MYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           MY +CG ++ A +V+  +   E  V +WNAM+ G   +G  ++A++L  +MQ+  +   R
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 398 ITFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            T   +LS+C     ++ G +  +  M+     D  V +  CI+++  + G + EA EV 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEAREVF 302

Query: 457 SSMPMEPNAAVWEALLGACRK--HGEVEF 483
             M  + +   W  ++G      H E+ F
Sbjct: 303 DKMETK-SVVSWTIIIGGYADCGHSEIAF 330


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 368/624 (58%), Gaps = 55/624 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACS 144
           A  VF    + +V  WNS+LRA +  N P R +  Y+EM+      P++FT+P++ K C+
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           +    K G  +H  VVK  L  D++++++ + MYA  G +  AR + +     + + W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 205 LIDGYLKCGDIEGAKELFKST----------------------KDKNTGSY--------- 233
           +I GY+K      A  L+K                        KD   G           
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 234 --------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                   +A+++ +A+ G  + AR++F++++DKD   WSA+I GY K+    EAL++F 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 286 EMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           E+     ++P +  +  V++ACA LG L+ G W+HD++ R        L  +L+DM++KC
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A ++F+ M  K++ +WN+M+ G A+HG   +A+  F  MQ   ++PD ITF  VL
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVL 390

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+HAG++  G +    ++ +YG+  + EHYGC+VDLL RAG LAEA E I  MP++P+
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
            A+W ++LGACR +  +E GE   + LL++EP N              +  ++V K+R+L
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVREL 510

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M E+GI+  PG S + ++ + H F  GD SHP++ EI +ML+++ EKLK+ GY  ++S+V
Sbjct: 511 MNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEV 570

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L +ID+ +KE +   HSEKLA+ +G + ++ G  I ++KNLRVC DCH+  KL+SK+++R
Sbjct: 571 LLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQR 630

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I +RDR R+HHF++G CSC D+W
Sbjct: 631 QITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTY 136
           ++  + + A +VF+ +   +V+ W++++   +++N     + L+ E+  G + +PN+ T 
Sbjct: 226 AKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTI 285

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
             V  AC+     + G  VH ++ +      V + +S I M++  G ++ A++I D  S 
Sbjct: 286 LAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY 345

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKL 252
            D+I WN++++G+   G    A   F+  +  +      ++  +++  +  G  +E +KL
Sbjct: 346 KDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405

Query: 253 FNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           F E+     +      +  ++D   + G   EA E    M    ++P   +   +L AC 
Sbjct: 406 FYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM---PLQPDGAIWGSMLGACR 462

Query: 308 SLGALDQG 315
               L+ G
Sbjct: 463 VYNNLELG 470



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 21/195 (10%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S+  + + A ++F+S+   ++  WNS++     H      ++ +  M   D +P++ T+ 
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFI 387

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQI 190
            V  ACS     +EG ++   +    L G V +KS   + Y C        G + +AR+ 
Sbjct: 388 GVLTACSHAGLVQEGKKLFYEI--EALYG-VRLKS---EHYGCMVDLLCRAGLLAEAREF 441

Query: 191 LDDGS-KSDVICWNALIDG-----YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG 244
           +     + D   W +++        L+ G+ E A+ L K  +  N G Y  + + +A+  
Sbjct: 442 IRVMPLQPDGAIWGSMLGACRVYNNLELGE-EAARFLLK-LEPTNDGVYILLSNIYAKRK 499

Query: 245 RFEEARKLFNEMNDK 259
            + E +K+   MN+K
Sbjct: 500 MWNEVKKVRELMNEK 514


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/672 (37%), Positives = 375/672 (55%), Gaps = 50/672 (7%)

Query: 3   TKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDI-LNTKCH--TSWQHLKQAHAVILKS 59
           TK     LP     +  + + IP S   ++ IL+  L +  H  T    +KQ HA I + 
Sbjct: 6   TKTCLFILPKTSYCQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRK 65

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
           G  Q  +V   L++               VF  V  PN F+W +++R           + 
Sbjct: 66  GLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVL 125

Query: 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
           LY+ M      P  FT+  + KACS       G QVH                       
Sbjct: 126 LYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQT-------------------- 165

Query: 180 CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239
                     IL  G  SD+   N LID Y+KCG +     +F    D++  S+ ++I  
Sbjct: 166 ----------ILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G  E A +LF+ +  KD + W+A++ GY ++   +EALEVF  MQ   +K  +  L
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSI--CVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
             V++ACA LGA     W+ D  +++      + V+G+AL+DMYAKCG ++ A+KVFE M
Sbjct: 276 VGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
           + + V+++++MI G AMHG A  A+ELF +M + +++P+R+TF  VL+AC+HAGM+++G 
Sbjct: 336 EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQ 395

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           Q    M++ +G+ P  +HY C+VDLLGRAG L EA  ++  MPM P+  VW ALLGACR 
Sbjct: 396 QLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRI 455

Query: 478 HGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSS 523
           HG  +  +     L E+EP                 R DDV+K+RKLM+ +G+K NPG S
Sbjct: 456 HGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCS 515

Query: 524 MID-VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
            ++   G+IHEF  GD SHP+ +EI   L+ ++++LK  GY PN S V +DI +EEK+  
Sbjct: 516 WVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRL 575

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLA+AFG + T+ G TIR++KNLR+CEDCHS     S++  R+I+VRD +R+HH
Sbjct: 576 LMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHH 635

Query: 643 FRNGKCSCNDFW 654
           FR+G+CSC +FW
Sbjct: 636 FRDGRCSCGNFW 647


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/670 (37%), Positives = 379/670 (56%), Gaps = 59/670 (8%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH 61
           S+ +  T LP +      S  N P  +      L +     H S   + Q HA IL+   
Sbjct: 3   SSPLIATSLPQNHATATASFRNPPPEK------LAVFIDNSH-SVDEVLQIHAAILRHNL 55

Query: 62  FQDHYVSGTLVKCH-ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
                     +K H A +       +L +F+    P++F++ + +     +    +   L
Sbjct: 56  LIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLL 115

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y +++     PN+FT+ ++ K+CS     K G  +H HV+K GL         G+  Y  
Sbjct: 116 YVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFGL---------GLDPYVA 162

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G                      L+D Y K GD+  A+++F    +++  S  AMI+ +
Sbjct: 163 TG----------------------LVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 200

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVL 299
           A+ G  E AR LF+ M ++D ++W+ +IDGY++ G+  +AL +F ++  D K KP +  +
Sbjct: 201 AKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITV 260

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L+AC+ +GAL+ G WIH  V  + I ++  + TAL+DMY+KCG L+ A  VF D   
Sbjct: 261 VAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPR 320

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K++  WNAMI G AMHG + DA+ LF +MQ    ++P  ITF   L ACAHAG+++ G+Q
Sbjct: 321 KDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQ 380

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M Q YGI P++EHYGC+V LLGRAG L  A E+I +M ME ++ +W ++LG+C+ H
Sbjct: 381 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLH 440

Query: 479 GEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSM 524
           GE   G+ + + L+     N                 + VAK+R LMKE+GI   PG S 
Sbjct: 441 GEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGIST 500

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           I+++  +HEFR GD  H + KEIY ML+K+ E++K  GY PN++ VL D++E EKE + +
Sbjct: 501 IEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQ 560

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSE+LAIA+G I+T PG+ +++ KNLRVC DCH+ TKLISK+  R I++RDR R+HHF 
Sbjct: 561 VHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFS 620

Query: 645 NGKCSCNDFW 654
           +G CSC+DFW
Sbjct: 621 DGSCSCDDFW 630


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/624 (39%), Positives = 361/624 (57%), Gaps = 48/624 (7%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           + LKQ H  ++ +G   +  + G  V   A    +N   + ++ +   KP +F  NS++R
Sbjct: 23  KELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIR 82

Query: 107 ACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           A  +   P +    Y++++  +    P+ +T+  + + C+   A + G  VH  ++K+G 
Sbjct: 83  AYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA-QSACEAGPAVHGALIKHGF 141

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             D HV+S  I MYA   C++   ++ +   K D++C   ++    KCGDI         
Sbjct: 142 EYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDI--------- 192

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                         GFAR         LF+ M  +D ++W+A+I GY + G  +EAL +F
Sbjct: 193 --------------GFAR--------NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLF 230

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             MQ D +K  +  +  V+ AC  LGALDQG W H ++++N I +   LGTALVDMY KC
Sbjct: 231 KLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKC 290

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A KVF +M  K V+TW+  IGGLAM+G     +ELF  M+ E + P+ ITF  VL
Sbjct: 291 GNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVL 350

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
             C+  G +D G      M++ +GI+P +EHYGC+VDL GRAG L EA   I++MP++P+
Sbjct: 351 KGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPH 410

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKL 510
           A  W ALL ACR +  +E GE   + L+E+E +N                 D V+ +R+ 
Sbjct: 411 AGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQS 470

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MK  GI   PG S+++VNG +HEF +GD SHP    I  M  +I ++LK+ GY  +++ V
Sbjct: 471 MKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSV 530

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           LFDI+EEEKE A   HSEK+AIAFG  +   G  IR++KNLR+C DCH  +K+ISK+F+R
Sbjct: 531 LFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFER 590

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +IIVRDR R+HHF++G+CSC DFW
Sbjct: 591 EIIVRDRNRFHHFKDGECSCKDFW 614


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 366/624 (58%), Gaps = 51/624 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  HL Q HA +L+ G + +  ++  L + +A       + ++ VFN+  +PNVF ++++
Sbjct: 59  SVAHLLQIHASLLRRGLYHNPILNFKLQRSYAA--LGRLDCSVFVFNTFDEPNVFSFSAI 116

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + + ++     R    YS+M+    +PN FT+ +V K+CS+    + G  +H   +K GL
Sbjct: 117 IHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSL----ESGKVLHCQAIKLGL 172

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             D++V++                                L+D Y + GD+  A++LF  
Sbjct: 173 GSDLYVRT-------------------------------GLVDVYARGGDVVCARQLFDK 201

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             +++  S   M++ +++ G  ++AR LF  M ++D + W+ +I GY + G   E+L++F
Sbjct: 202 MPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLF 261

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M   K  P +  +  VL+AC  LGAL+ G WIH +++   I ++  +GTAL+DMY+KC
Sbjct: 262 RRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKC 321

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+ A  VF+ ++ K+V  WN+MI G AMHG +  A++LF +M     +P  ITF  +L
Sbjct: 322 GSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGIL 381

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC H G+++ G      M+  YGI+P++EHYGC+V+LLGRAG+L EA  ++ +M +  +
Sbjct: 382 SACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAAD 441

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKL 510
             +W  LLG CR H  ++ GE + K L++ +  N                 + VAKMR L
Sbjct: 442 PVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTL 501

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MKE GI+   G S I+V+  +HEF  G+  HP+ KEIY+ML +I   LK  GY+P +  V
Sbjct: 502 MKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVV 561

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D+ EE+KE + + HSEKLAIAFG I+T PG T++++KNLRVC DCH+  K+IS++  R
Sbjct: 562 LHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGR 621

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I++RDR R+HHF +G CSC D+W
Sbjct: 622 KIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/516 (43%), Positives = 328/516 (63%), Gaps = 14/516 (2%)

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +Q+HA + ++GL     +     + YA  G ++ +  +        V  W A+I G+   
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           GD+  A++LF +  +K+  S  AM++ +A+ G  + AR LF+ M ++D + W+ +IDGYT
Sbjct: 107 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYT 166

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           ++G   EAL +F  M + K KP +  +  VL+AC  LGAL+ G W+H +++ N I  +  
Sbjct: 167 QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVH 226

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +GTALVDMY+KCG L+ A  VF+ +  K+V  WN+MI G AMHG + +A++LF  M R  
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG 286

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P  ITF  +LSAC H+G +  G      M+  YGI+P++EHYGC+V+LLGRAG++ +A
Sbjct: 287 LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA 346

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
            E++ +M +EP+  +W  LLGACR HG++  GE++ ++L++    N              
Sbjct: 347 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 406

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
              D VA++R +MK+ G+K  PG S I+VN  +HEF  G  +HP+ KEIY+ML++I   L
Sbjct: 407 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWL 466

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           K  GY+P +  VL DI E EKE + + HSEKLAIAFG INT PG TI+++KNLRVC DCH
Sbjct: 467 KSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCH 526

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             TKLISK+  R I+VRDR R+HHF NG CSC D+W
Sbjct: 527 EVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 25/302 (8%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           ++ C+A  +    + A  +F+ + + +   WN ++    ++  P   + L+  M+   +K
Sbjct: 130 MLTCYA--KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN+ T  +V  AC    A + G  VH+++  NG+  +VHV ++ + MY+  G +  AR +
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----KDKNTGSYNAMISGFARFGRF 246
            D     DV+ WN++I GY   G  + A +LFKS           ++  ++S     G  
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 307

Query: 247 EEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            E   +FN+M D+  I      +  +++   + G+ ++A E+   M    I+P   +   
Sbjct: 308 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN---IEPDPVLWGT 364

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-----LVDMYAKCGRLDMAWKVFED 356
           +L AC   G +  G       K   + VD  L  +     L ++YA  G  D   ++   
Sbjct: 365 LLGACRLHGKIALG------EKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTM 418

Query: 357 MK 358
           MK
Sbjct: 419 MK 420



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 153/372 (41%), Gaps = 82/372 (22%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
            HL Q HAV+ + G   DH+         + +     + ++ +F     P+VF W +++ 
Sbjct: 44  SHLLQIHAVLFRHG--LDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAII- 100

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
               H    R   + ++ +  D+ P K          S+T                    
Sbjct: 101 ----HGHALRGDVVSAQQL-FDTMPEK-------SLVSLTAM------------------ 130

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--- 223
                   +  YA  G ++ AR + D   + D +CWN +IDGY + G    A  LF+   
Sbjct: 131 --------LTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 182

Query: 224 -------------------------------STKDKNTGSYN-----AMISGFARFGRFE 247
                                          S  + N   +N     A++  +++ G  E
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 242

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           +AR +F++++DKD + W+++I GY   G+ +EAL++F  M R  + P       +L+AC 
Sbjct: 243 DARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 302

Query: 308 SLGALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTW 365
             G + +G  I + +K    I         +V++  + G ++ A+++ ++M ++ +   W
Sbjct: 303 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 362

Query: 366 NAMIGGLAMHGR 377
             ++G   +HG+
Sbjct: 363 GTLLGACRLHGK 374


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/675 (36%), Positives = 373/675 (55%), Gaps = 57/675 (8%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           ++L+  ++     W   K  H+ IL +GH  D  V   LVK +A  +  +++   +VF  
Sbjct: 232 SVLNAFSSPAALKWG--KAVHSRILNAGHESDTAVGTALVKMYA--KCGSYKDCRQVFEK 287

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           +   ++  WN+++    E         +Y++M      PNK TY  +  AC  + A   G
Sbjct: 288 LVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG 347

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            ++H+ V K G   D+ V+++ I MY+  G +  AR + D   + DVI W A+I G  K 
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKS 407

Query: 213 G----DIEGAKELFKSTKDKNTGSY----------------------------------- 233
           G     +   +E+ ++  + N  +Y                                   
Sbjct: 408 GFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG 467

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +++ ++  G  ++AR++F+ M  +D + ++A+I GY      KEAL++F+ +Q + +K
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P K     +L ACA+ G+L+    IH  V++     D  +G ALV  YAKCG    A  V
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           FE M  + V +WNA+IGG A HGR  DA++LF +M+ E ++PD +TF  +LSAC+HAG++
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G +    M Q + I P +EHYGC+VDLLGRAG L EAE +I +MP + N  +W ALLG
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTN 519
           ACR HG V   ER  +  L+++  N                 D  AK+RKLM++RG+   
Sbjct: 708 ACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 767

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           PG S I V   +H F   D SHPQ ++IY  L ++   +KM+GY P++  V+ D+DE EK
Sbjct: 768 PGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEK 827

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E A  +HSE+LAIA+G I+T PG  I + KNLRVC DCH+ATK ISK+  R+II RD  R
Sbjct: 828 ENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNR 887

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 888 FHHFKDGVCSCGDYW 902



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 234/502 (46%), Gaps = 48/502 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN--SVHKPNVFVWNSVLRA 107
           +Q H  I++     D Y    L+  +      + E A +V+   S  +  V  WN+++  
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYIQC--GSIEEARQVWKKLSYMERTVHSWNAMVVG 100

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +++    + + L  +M      P++ T  +   +C    A + G ++H   ++ GL  D
Sbjct: 101 YIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFD 160

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK- 226
           V V +  + MYA  G + +AR++ D   K  V+ W   I GY  CG  E A E+F+  + 
Sbjct: 161 VKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ 220

Query: 227 --------------------------------------DKNTGSYNAMISGFARFGRFEE 248
                                                 + +T    A++  +A+ G +++
Sbjct: 221 EGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKD 280

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            R++F ++ ++D I W+ +I G  + GY++EA EV+N+MQR+ + P K     +L AC +
Sbjct: 281 CRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVN 340

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
             AL  G  IH  V +     D  +  AL+ MY++CG +  A  VF+ M  K+V +W AM
Sbjct: 341 SAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAM 400

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLA  G   +A+ ++ +MQ+  + P+R+T+  +L+AC+    ++ G +    + +  G
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-G 459

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           +  +      +V++    G + +A +V   M ++ +   + A++G    H     G+   
Sbjct: 460 LATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAH---NLGKEAL 515

Query: 489 KILLEMEPQNRRCDDVAKMRKL 510
           K+   ++ +  + D V  +  L
Sbjct: 516 KLFDRLQEEGLKPDKVTYINML 537



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 207/439 (47%), Gaps = 74/439 (16%)

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           ++ N   Y  + K C   +    G QVH H++++    D +  ++ I MY   G + +AR
Sbjct: 19  AQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEAR 78

Query: 189 QILDDGS--KSDVICWNALIDGYLKCGDIEGAKELFKSTKD-----------------KN 229
           Q+    S  +  V  WNA++ GY++ G IE A +L +  +                  K+
Sbjct: 79  QVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKS 138

Query: 230 TGS--------YNAMISG--------------FARFGRFEEARKLFNEMNDKDEITWSAI 267
            G+        + AM +G              +A+ G  EEAR++F++M  K  ++W+  
Sbjct: 139 PGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTIT 198

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I GY   G  + A E+F +M+++ + P +     VL A +S  AL  G  +H  +     
Sbjct: 199 IGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGH 258

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             D  +GTALV MYAKCG      +VFE +  +++  WN MIGGLA  G  ++A E++ +
Sbjct: 259 ESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQ 318

Query: 388 MQREKMRPDRITFACVLSACAHAGMI-----------------DRGLQ-ALTYMQQMYG- 428
           MQRE + P++IT+  +L+AC ++  +                 D G+Q AL  M    G 
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGS 378

Query: 429 -----------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEALLGA 474
                      +  +V  +  ++  L ++G+ AEA  V   M    +EPN   + ++L A
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438

Query: 475 CRKHGEVEFGERLGKILLE 493
           C     +E+G R+ + ++E
Sbjct: 439 CSSPAALEWGRRIHQQVVE 457



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           KDG    A++V   +Q+   +        +L  C  +  L  G  +H H+ ++    D  
Sbjct: 4   KDG----AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQY 59

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQR 390
              AL++MY +CG ++ A +V++ +   E  V +WNAM+ G   +G  + A++L  +MQ+
Sbjct: 60  TVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ 119

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             + PDR T    LS+C   G ++ G + + +     G+  +V+   CI+++  + G + 
Sbjct: 120 HGLAPDRTTIMSFLSSCKSPGALEWG-REIHFQAMQAGLLFDVKVANCILNMYAKCGSIE 178

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           EA EV   M  + +   W   +G     G  E
Sbjct: 179 EAREVFDKME-KKSVVSWTITIGGYADCGRSE 209


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 379/670 (56%), Gaps = 57/670 (8%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH 61
           S+ +  T LP +    ++S T            L +L  K   S   + Q HA IL+   
Sbjct: 3   SSPLLATSLPQN----QLSTTATARFRLPPPEKLAVLIDKSQ-SVDEVLQIHAAILRHNL 57

Query: 62  FQDHYVSGTLVKCH-ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
                     +K H A +       +L +F+    P++F++ + +     +    +   L
Sbjct: 58  LLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLL 117

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y +++  +  PN+FT+ ++ K+CS     K G  +H HV+K GL         GI  Y  
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGL---------GIDPYVA 164

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G                      L+D Y K GD+  A+++F    +++  S  AMI+ +
Sbjct: 165 TG----------------------LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 202

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVL 299
           A+ G  E AR LF+ M ++D ++W+ +IDGY + G+  +AL +F ++  + K KP +  +
Sbjct: 203 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 262

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L+AC+ +GAL+ G WIH  VK + I ++  + T L+DMY+KCG L+ A  VF D   
Sbjct: 263 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 322

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K++  WNAMI G AMHG + DA+ LF +MQ    ++P  ITF   L ACAHAG+++ G++
Sbjct: 323 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M Q YGI P++EHYGC+V LLGRAG L  A E I +M M+ ++ +W ++LG+C+ H
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 442

Query: 479 GEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSM 524
           G+   G+ + + L+ +  +N                 + VAK+R LMKE+GI   PG S 
Sbjct: 443 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 502

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           I++   +HEFR GD  H + KEIY ML+KI E++K  GY PN++ VL D++E EKE + +
Sbjct: 503 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQ 562

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSE+LAIA+G I+T PG+ +++ KNLRVC DCH+ TKLISK+  R I++RDR R+HHF 
Sbjct: 563 VHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFT 622

Query: 645 NGKCSCNDFW 654
           +G CSC DFW
Sbjct: 623 DGSCSCGDFW 632


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/629 (39%), Positives = 373/629 (59%), Gaps = 53/629 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S Q +KQ HA ++ +        +  L+K  A +  S    A K+F+ + +P++F++N++
Sbjct: 28  SMQQIKQTHAQLITTALISHPVSANKLLKLAACASLS---YAHKLFDQIPQPDLFIYNTM 84

Query: 105 LRA--CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           ++A     H+    +I   S    +   PN++++   F AC      +EG QV  H VK 
Sbjct: 85  IKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKV 144

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           GL                               +++V   NALI  Y K G +  ++++F
Sbjct: 145 GL-------------------------------ENNVFVVNALIGMYGKWGLVGESQKVF 173

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           +   D++  S+N +I+ +   G    A++LF+ M ++D ++WS II GY + G + EAL+
Sbjct: 174 QWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALD 233

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
            F++M +   KP ++ L   LAAC++L ALDQG WIH ++ +  I ++  L  +++DMYA
Sbjct: 234 FFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYA 293

Query: 343 KCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           KCG ++ A +VF + K+K+ V+ WNAMIGG AMHG  ++AI +F +M+ EK+ P+++TF 
Sbjct: 294 KCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFI 353

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +L+AC+H  M++ G      M   Y I PE+EHYGC+VDLL R+G L EAE++ISSMPM
Sbjct: 354 ALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPM 413

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM----------RKLM 511
            P+ A+W ALL ACR + ++E G R+G+I+  M+P +  C  +              +++
Sbjct: 414 APDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARIL 473

Query: 512 KE-----RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +E     R  K  PG S I++ G  H+F  GD SHPQ +EIY  L ++  KLK  GY P 
Sbjct: 474 REKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPE 533

Query: 567 SSQVLFDI-DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
             ++L DI DEE+KETA   HSEKLAIAFG +NT  G  IR++KNLRVC DCH ATK IS
Sbjct: 534 LGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFIS 593

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KV+ R IIVRDR RYHHF +G CSC D+W
Sbjct: 594 KVYNRVIIVRDRTRYHHFEDGICSCKDYW 622


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/666 (38%), Positives = 379/666 (56%), Gaps = 91/666 (13%)

Query: 65  HYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           HY    L++ C  +  F     A+ VF ++ +PN  +WN + R     ++P   + LY  
Sbjct: 6   HYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVV 65

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+ +   PN FT+P + K+C+ ++  KEG Q+H HV+K G   D++V +S I MYA  G 
Sbjct: 66  MISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125

Query: 184 VNKARQILDDGSK-------------------------------SDVICWNALIDGYLKC 212
           +  A+++ D  S                                 DV+ WNA+I GY + 
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185

Query: 213 GDIEGAKELFKSTKDKN-----------------TGS----------------------Y 233
           G+ + A ELFK     N                 +GS                       
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV 245

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+I  +++ G  E A +L   +++KD I+W+ +I GYT    YKEAL +F EM R    
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHV--KRNSICVD--AVLGTALVDMYAKCGRLDM 349
           P    +  +L ACA LGA+D G WIH ++  K   + V   + L T+L+DMYAKCG +D 
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDA 365

Query: 350 AWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
           A +V +     + + TWNAMI G AMHGRA+ A ++F +M++  + PD ITF  +LSAC+
Sbjct: 366 APQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 425

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+GM+D G      M+Q Y I P++EHYGC++DLLG +G   EAEE+I++MPMEP+  +W
Sbjct: 426 HSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 485

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            +LL AC+ HG +E GE   K L+++EP+N               + ++V K+R L+ ++
Sbjct: 486 CSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDK 545

Query: 515 GIKTN-PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           G+K   PG S I+++ V+HEF  GD  HPQ +EIY ML+++   L+  G+ P++S+VL +
Sbjct: 546 GMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 605

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           ++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH ATKLISK++KR+II
Sbjct: 606 MEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 665

Query: 634 VRDRVR 639
            RDR R
Sbjct: 666 ARDRTR 671


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/639 (38%), Positives = 359/639 (56%), Gaps = 63/639 (9%)

Query: 79  RFSNFELALKVFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           R+SN      +FN  V K NVF WNSV+       +    +  +S M  +  KPN+ T+P
Sbjct: 97  RYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFP 156

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
              K+CS       G Q H   +  G   D+ V S+ + MY+  G +  AR + D+ S  
Sbjct: 157 CAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR 216

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY------------------------ 233
           +++ W ++I GY++  D   A  LFK    + +GS                         
Sbjct: 217 NIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSE 276

Query: 234 -----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                                  N ++  +A+ G    +R++F+ M ++D I+W++II  
Sbjct: 277 KSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAV 336

Query: 271 YTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           Y ++G   E++E+F+ M +D +I      LS VL ACA  G+   G  IHD V +  +  
Sbjct: 337 YAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES 396

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           +  +GT+++DMY KCG+++MA K F+ M+ K V +W+AM+ G  MHG A +A+E+F++M 
Sbjct: 397 NVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMN 456

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
              ++P+ ITF  VL+AC+HAG+++ G      M   + ++P VEHYGC+VDLLGRAGYL
Sbjct: 457 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYL 516

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN----------- 498
            EA ++I  M + P+  VW ALLGACR H  V+ GE   + L E++P+N           
Sbjct: 517 KEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIY 576

Query: 499 ---RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R +DV +MR LMK  G+   PG S++D+ G +H F  GD  HPQ ++IY  L+K+ 
Sbjct: 577 ADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLS 636

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            KL+  GY P+ + VL D+  EEKE   + HSEKLA+AFG +NT PG TI +IKNLRVC 
Sbjct: 637 MKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCG 696

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCH+A K ISK+  R+I+VRD  R+HHFR+G CSC D+W
Sbjct: 697 DCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 15/273 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++K G   D  V  TL+  +A  +     ++ +VF+ + + +V  WNS++    ++ 
Sbjct: 284 HGFLIKRGFEGDLGVENTLMDAYA--KCGELGVSRRVFDGMAERDVISWNSIIAVYAQNG 341

Query: 113 EPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                + ++  MV   +   N  T   V  AC+ + + + G  +H  V+K GL  +V V 
Sbjct: 342 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 401

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----D 227
           +S I MY   G V  AR+  D   + +V  W+A++ GY   G  + A E+F         
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVK 461

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
            N  ++ ++++  +  G  EE    F  M+ + ++      +  ++D   + GY KEA +
Sbjct: 462 PNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFD 521

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +   M   K++P   V   +L AC     +D G
Sbjct: 522 LIKGM---KLRPDFVVWGALLGACRMHKNVDLG 551


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/675 (36%), Positives = 380/675 (56%), Gaps = 57/675 (8%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           ++LD  ++    +W   K+ HA ++ +G   D  +   LV  +      + + A +VF+ 
Sbjct: 163 SVLDACSSPAGLNWG--KEVHAQVVTAGFVSDFRIGTALVSMYVKG--GSMDDARQVFDG 218

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           +H  +V  +N ++    +  +  +   L+  M  V  KPNK ++ ++   C   EA   G
Sbjct: 219 LHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG 278

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
             VHA  +  GL  D+ V +S I+MY   G +  AR++ D+    DV+ W  +I+GY + 
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 213 GDIEGAKELFKSTKDKN-----------------TGSYN--------------------- 234
           G+IE A  LF + +++                  + + N                     
Sbjct: 339 GNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVS 398

Query: 235 -AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
            A++  +A+ G  ++AR++F+ M  +D ++WSA+I  Y ++GY  EA E F+ M+R  I+
Sbjct: 399 TALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIE 458

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P       +L AC  LGALD G+ I+    +  +     LG AL+ M AK G ++ A  +
Sbjct: 459 PDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYI 518

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++V TWNAMIGG ++HG A +A+ LF +M +E+ RP+ +TF  VLSAC+ AG +
Sbjct: 519 FDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFV 578

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           D G +  TY+ +  GI P V+ YGC+VDLLGRAG L EAE +I SMP++P +++W +LL 
Sbjct: 579 DEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLV 638

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTN 519
           ACR HG ++  ER  +  L ++P +                 ++VAK+RK+M+ RGI+  
Sbjct: 639 ACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKE 698

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
            G + I+V G +H F   D SHP V EIY  L +++  +K EGY P +  VL D+ E++K
Sbjct: 699 QGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQK 758

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E A  YHSEKLAIA+G ++   G  IR+ KNLRVC DCHSA+K ISKV  R+II RD  R
Sbjct: 759 EEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASR 818

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 819 FHHFKDGVCSCGDYW 833



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 230/519 (44%), Gaps = 80/519 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ    I++ G   + Y   TL+K +  S   N   A ++F+SV    V  WN+++    
Sbjct: 77  KQVRDHIIQGGRQLNIYELNTLIKLY--SICGNVTEARQIFDSVENKTVVTWNALIAGYA 134

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +        +L+ +MV    +P+  T+ +V  ACS       G +VHA VV  G   D  
Sbjct: 135 QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFR 194

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           + ++ + MY   G ++ ARQ+ D     DV  +N ++ GY K GD E A ELF   +   
Sbjct: 195 IGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVG 254

Query: 228 --KNTGSYNAMISG-----------------------------------FARFGRFEEAR 250
              N  S+ +++ G                                   +   G  E AR
Sbjct: 255 LKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGAR 314

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ M  +D ++W+ +I+GY ++G  ++A  +F  MQ + I+P +     ++ ACA   
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISA 374

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L+    IH  V       D ++ TALV MYAKCG +  A +VF+ M  ++V +W+AMIG
Sbjct: 375 NLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIG 434

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ------------ 418
               +G   +A E F  M+R  + PD +T+  +L+AC H G +D G++            
Sbjct: 435 AYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVS 494

Query: 419 ------ALTYMQQMYGIDPEVEHYGCIVDLLGR----------AGY-----LAEAEEVIS 457
                 AL  M   +G    VE    I D + R           GY       EA  +  
Sbjct: 495 HVPLGNALIIMNAKHG---SVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFD 551

Query: 458 SMPME---PNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            M  E   PN+  +  +L AC + G V+ G R    LLE
Sbjct: 552 RMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLE 590



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 197/392 (50%), Gaps = 45/392 (11%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +DS+    TY  +F+ C+       G QV  H+++ G   +++  ++ I++Y+  G V +
Sbjct: 55  IDSR----TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTE 110

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN----------------- 229
           ARQI D      V+ WNALI GY + G ++ A  LF+   D+                  
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS 170

Query: 230 ---------------TGSY-------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                          T  +        A++S + + G  ++AR++F+ ++ +D  T++ +
Sbjct: 171 PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVM 230

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           + GY K G +++A E+F  MQ+  +KP K     +L  C +  AL  G  +H       +
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGL 290

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             D  + T+L+ MY  CG ++ A +VF++MK+++V +W  MI G A +G  +DA  LF  
Sbjct: 291 VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFAT 350

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           MQ E ++PDRIT+  +++ACA +  ++   +  + +  + G   ++     +V +  + G
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCG 409

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            + +A +V  +MP   +   W A++GA  ++G
Sbjct: 410 AIKDARQVFDAMP-RRDVVSWSAMIGAYVENG 440


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/676 (36%), Positives = 370/676 (54%), Gaps = 56/676 (8%)

Query: 33   TILDILNTKCHTS-WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
            T L +L+   ++S +   K  H  IL+SG   + +++  L+  +   R  +   A  VF 
Sbjct: 433  TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMY--RRCGSLMEAQNVFE 490

Query: 92   SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
                 +V  WNS++    +H        L+ EM   + +P+  T+ +V   C   EA + 
Sbjct: 491  GTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALEL 550

Query: 152  GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
            G Q+H  + ++GL  DV++ ++ I MY   G +  AR +       DV+ W A+I G   
Sbjct: 551  GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCAD 610

Query: 212  CGDIEGAKELF---------------------------------------KSTKDKNTGS 232
             G+   A ELF                                        S  + +TG 
Sbjct: 611  QGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV 670

Query: 233  YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
             NA+IS +++ G   +AR++F++M  +D ++W+ II GY ++G  + A+E   +MQ   +
Sbjct: 671  GNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDV 730

Query: 293  KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
             P KF    +L AC+S  AL++G  +H  + +  +  D  +G AL+ MYAKCG    A +
Sbjct: 731  VPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQE 790

Query: 353  VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
            VF+++  K V TWNAMI   A HG A  A+  F  M++E ++PD  TF  +LSAC HAG+
Sbjct: 791  VFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGL 850

Query: 413  IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            +  G Q  + M+  YG+ P +EHYGC+V LLGRA    EAE +I+ MP  P+AAVWE LL
Sbjct: 851  VLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 910

Query: 473  GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
            GACR HG +   E      L++  +N               R DDVAK+R++M+ RGI+ 
Sbjct: 911  GACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 970

Query: 519  NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
             PG S I+V+ +IHEF   D SHP+  EIY  LK++  +++  GY P++  VL D+ +  
Sbjct: 971  EPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAH 1030

Query: 579  KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
            +ET+   HSE+LAIA+G I T PG  IR+ KNLR+C DCH+A+K ISK+  R+II RD  
Sbjct: 1031 QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1090

Query: 639  RYHHFRNGKCSCNDFW 654
            R+H F+NGKCSC D+W
Sbjct: 1091 RFHSFKNGKCSCEDYW 1106



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 239/489 (48%), Gaps = 46/489 (9%)

Query: 33  TILDILNTKCHT--SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           T + IL T C++    ++ K+ H+ I+K+G+ +D  V  +L+  +   +  +   A +VF
Sbjct: 130 TYISIL-TACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYG--KCGDLPRARQVF 186

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
             +   +V  +N++L    +       + L+ +M      P+K TY  +  A +      
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG ++H   V+ GL  D+ V ++ + M    G V+ A+Q     +  DV+ +NALI    
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALA 306

Query: 211 KCG-DIEGAKELFKSTKDK---NTGSY--------------------------------- 233
           + G ++E  ++ ++   D    N  +Y                                 
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366

Query: 234 --NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
             NA+IS +AR G   +AR+LF  M  +D I+W+AII GY +     EA+ ++ +MQ + 
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           +KP +     +L+ACA+  A   G  IH+ + R+ I  +  L  AL++MY +CG L  A 
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VFE  + ++V +WN+MI G A HG  + A +LF +MQ E++ PD ITFA VLS C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            ++ G Q    + +  G+  +V     ++++  R G L +A  V  S+    +   W A+
Sbjct: 547 ALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSL-QHRDVMSWTAM 604

Query: 472 LGACRKHGE 480
           +G C   GE
Sbjct: 605 IGGCADQGE 613



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 241/496 (48%), Gaps = 54/496 (10%)

Query: 29  FSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
            ++ T L ILN  C TS   +  K  H+ I + GH  D  +   L+  +A  R  +   A
Sbjct: 328 LNRTTYLSILNA-CSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYA--RCGDLPKA 384

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
            ++F ++ K ++  WN+++       +    + LY +M     KP + T+  +  AC+ +
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            A  +G  +H  ++++G+  + H+ ++ + MY   G + +A+ + +     DVI WN++I
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 207 DGYLKCGDIEGAKELFKSTK---------------------------------------- 226
            G+ + G  E A +LF+  +                                        
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 227 -DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D N G  NA+I+ + R G  ++AR +F+ +  +D ++W+A+I G    G   +A+E+F 
Sbjct: 565 LDVNLG--NALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +MQ +  +P K   S +L  C S   LD+G  +  ++  +   +D  +G AL+  Y+K G
Sbjct: 623 QMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSG 682

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A +VF+ M  +++ +WN +I G A +G    A+E  ++MQ + + P++ +F  +L+
Sbjct: 683 SMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLN 742

Query: 406 ACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           AC+    ++ G  + A    +++ G   +V     ++ +  + G   EA+EV  ++ +E 
Sbjct: 743 ACSSFSALEEGKRVHAEIVKRKLQG---DVRVGAALISMYAKCGSQGEAQEVFDNI-IEK 798

Query: 464 NAAVWEALLGACRKHG 479
           N   W A++ A  +HG
Sbjct: 799 NVVTWNAMINAYAQHG 814



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 235/525 (44%), Gaps = 47/525 (8%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKC 74
           E++S T+ P    +++     L   C         K+ HA ++++    D ++S  L+  
Sbjct: 12  EDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINM 71

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF 134
           +   R  +   A +VF  + + +V  WNS++    +     +   L+ EM      PNK 
Sbjct: 72  YVKCR--SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKI 129

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY ++  AC      + G ++H+ ++K G   D  V++S + MY   G + +ARQ+    
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI 189

Query: 195 SKSDVICWNA-----------------------------------LIDGYLKCGDIEGAK 219
           S  DV+ +N                                    L+D +     ++  K
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249

Query: 220 ELFKSTKDKNTGS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
            + K T ++   S      A+++   R G  + A++ F    D+D + ++A+I    + G
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           +  EA E +  M+ D +   +     +L AC++  AL+ G  IH H+  +    D  +G 
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN 369

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+ MYA+CG L  A ++F  M  +++ +WNA+I G A      +A+ L+ +MQ E ++P
Sbjct: 370 ALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
            R+TF  +LSACA++     G      + +  GI         ++++  R G L EA+ V
Sbjct: 430 GRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL--EMEPQN 498
                   +   W +++    +HG  E   +L + +   E+EP N
Sbjct: 489 FEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/680 (36%), Positives = 380/680 (55%), Gaps = 57/680 (8%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           +F+  +IL   ++    +W   ++ H  ++++G   +  V   L+  +A  +  +   A 
Sbjct: 145 KFTFVSILSACSSPAALNWG--REVHVRVMEAGLANNATVGNALISMYA--KCGSVRDAR 200

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+++   +   W ++  A  E       +  Y  M+    +P++ TY  V  AC    
Sbjct: 201 RVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLA 260

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           A ++G Q+HA +V++    DV V ++  +MY   G V  AR++ +     DVI WN +I 
Sbjct: 261 ALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320

Query: 208 GYLKCGDIEGAKELF------------------------------------KSTKDKNTG 231
           G +  G +E A  +F                                    ++ KD    
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS 380

Query: 232 SY---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                NA+I+ +++ G  ++AR++F+ M  +D ++W+A++ GY   G   E+   F +M 
Sbjct: 381 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKML 440

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           +  ++  K    CVL AC++  AL  G  IH  V +  I  D  +  AL+ MY KCG ++
Sbjct: 441 QQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVE 500

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A +V E M  ++V TWN +IGGLA +GR  +A++ F  M+ E+MRP+  TF  V+SAC 
Sbjct: 501 DAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACR 560

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
              +++ G +    M++ YGI P  +HY C+VD+L RAG+L EAE+VI +MP +P+AA+W
Sbjct: 561 VRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMW 620

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKER 514
            ALL ACR HG VE GE+  +  L++EPQN                  DVAK+RKLMKER
Sbjct: 621 GALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKER 680

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  PG S I+V G +H F  GD SHP+ +EIY  L+ + +++K  GY P++  V+ D+
Sbjct: 681 GVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDL 740

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D+E KE A  +HSEKLAIA+G I+T P   IRV KNLRVC DCH+ATK ISK+  R+II 
Sbjct: 741 DQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIA 800

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF+NG+CSC D+W
Sbjct: 801 RDAHRFHHFKNGECSCGDYW 820



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 199/392 (50%), Gaps = 41/392 (10%)

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           S+ + + Y  + ++C   +    G QVH H+++ G+  +V++ ++ +++Y   G VN+AR
Sbjct: 40  SQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEAR 99

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-------------------- 228
           ++ D  S   V+ WN +I GY   G  + A  LF   + +                    
Sbjct: 100 RLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 229 -------------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                              N    NA+IS +A+ G   +AR++F+ M  +DE++W+ +  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
            Y + GY +E+L+ ++ M ++ ++P +     VL+AC SL AL++G  IH  +  +    
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  + TAL  MY KCG +  A +VFE +  ++V  WN MIGGL   G+ ++A  +F +M 
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           +E + PDR+T+  +LSACA  G +  G + +       G+  +V     ++++  +AG +
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACG-KEIHARAVKDGLVSDVRFGNALINMYSKAGSM 398

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            +A +V   MP + +   W AL+G     G+V
Sbjct: 399 KDARQVFDRMP-KRDVVSWTALVGGYADCGQV 429



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 224/509 (44%), Gaps = 74/509 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  IL+ G   + Y+  TL+K + +    N   A ++F+     +V  WN ++    
Sbjct: 64  KQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN--EARRLFDKFSNKSVVSWNVMISGYA 121

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                    +L++ M     +P+KFT+ ++  ACS   A   G +VH  V++ GL  +  
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT 181

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           V ++ I MYA  G V  AR++ D  +  D + W  L   Y +                  
Sbjct: 182 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEG 241

Query: 212 --------------CGDIEGAK-------ELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                         CG +   +       ++ +S    +     A+   + + G  ++AR
Sbjct: 242 VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F  + ++D I W+ +I G    G  +EA  +F+ M ++ + P +     +L+ACA  G
Sbjct: 302 EVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG 361

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L  G  IH    ++ +  D   G AL++MY+K G +  A +VF+ M  ++V +W A++G
Sbjct: 362 GLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVG 421

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-----------HAGMIDRG--- 416
           G A  G+  ++   F KM ++ +  ++IT+ CVL AC+           HA ++  G   
Sbjct: 422 GYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFA 481

Query: 417 -LQALTYMQQMY--------------GIDP-EVEHYGCIVDLLGRAGYLAEAE---EVIS 457
            L     +  MY              G+   +V  +  ++  L + G   EA    EV+ 
Sbjct: 482 DLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMK 541

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGER 486
           S  M PNA  +  ++ ACR    VE G R
Sbjct: 542 SEEMRPNATTFVNVMSACRVRNLVEEGRR 570



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 151/299 (50%), Gaps = 18/299 (6%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           GS+ D   +  L+   +K  D+   K+    + +     N    N ++  +   G   EA
Sbjct: 39  GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF++ ++K  ++W+ +I GY   G  +EA  +F  MQ++ ++P KF    +L+AC+S 
Sbjct: 99  RRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSP 158

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            AL+ G  +H  V    +  +A +G AL+ MYAKCG +  A +VF+ M  ++  +W  + 
Sbjct: 159 AALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 218

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           G  A  G A ++++ +  M +E +RP RIT+  VLSAC     +++G       +Q++  
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------KQIHAQ 271

Query: 430 DPEVEHYG------CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             E EH+        +  +  + G + +A EV   +P   +   W  ++G     G++E
Sbjct: 272 IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSGQLE 329


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/676 (36%), Positives = 378/676 (55%), Gaps = 56/676 (8%)

Query: 33   TILDILNTKCHTS-WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
            T L +L+   ++S +   K  H  IL+SG   + +++  L+  +   R  +   A  VF 
Sbjct: 488  TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY--RRCGSIMEAQNVFE 545

Query: 92   SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
                 ++  WNS++    +H        L+ EM     +P+K T+ +V   C   EA + 
Sbjct: 546  GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 152  GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
            G Q+H  ++++GL  DV++ ++ I MY   G +  A ++       +V+ W A+I G+  
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFAD 665

Query: 212  CGDIEGAKELF-----------KST----------------------------KDKNTGS 232
             G+   A ELF           KST                             + +TG 
Sbjct: 666  QGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725

Query: 233  YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
             NA+IS +++ G   +ARK+F++M ++D ++W+ +I GY ++G    AL+   +MQ   +
Sbjct: 726  GNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGV 785

Query: 293  KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
               KF    +L AC+S  AL++G  +H  + +  +  D  +G AL+ MYAKCG L+ A +
Sbjct: 786  VLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQE 845

Query: 353  VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
            VF++   K V TWNAMI   A HG A  A++ F  M +E ++PD  TF  +LSAC H+G+
Sbjct: 846  VFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGL 905

Query: 413  IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            +  G +  + ++  +G+ P +EHYGC+V LLGRAG   EAE +I+ MP  P+AAVWE LL
Sbjct: 906  VMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLL 965

Query: 473  GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
            GACR HG V   E      L++  +N               R DDVAK+R++M+ RGI+ 
Sbjct: 966  GACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRK 1025

Query: 519  NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
             PG S I+V+ +IHEF   D SHP+  EIY  LK++  +++  GYSP++  VL ++D+E 
Sbjct: 1026 EPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEH 1085

Query: 579  KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
            +ET+   HSE+LAIA+G + T PG  IR+ KNLR+C DCH+A+K ISK+  R+II RD  
Sbjct: 1086 QETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1145

Query: 639  RYHHFRNGKCSCNDFW 654
            R+H F+NGKCSC DFW
Sbjct: 1146 RFHTFKNGKCSCEDFW 1161



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 240/493 (48%), Gaps = 48/493 (9%)

Query: 30  SQKTILDILNTKCHTS-WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           S+ T + IL   C  +  ++ K+ H+ I+++G+ +D  V  +L+  +   +  +   A +
Sbjct: 182 SKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYG--KCEDLPSARQ 239

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           VF+ +++ +V  +N++L    +       I L+ +M      P+K TY  +  A +    
Sbjct: 240 VFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
             EG ++H   V  GL  D+ V ++   M+   G V  A+Q L+  +  DV+ +NALI  
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAA 359

Query: 209 YLKCGDIE----------------------------------GAKELFKS-------TKD 227
             + G  E                                  GA EL  S       + D
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
              G  N++IS +AR G    AR+LFN M  +D I+W+AII GY +     EA++++ +M
Sbjct: 420 VQIG--NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q + +KP +     +L+AC +  A   G  IH+ + R+ I  +  L  AL++MY +CG +
Sbjct: 478 QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSI 537

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A  VFE  + +++ +WN+MI G A HG  + A +LF +M++E + PD+ITFA VL  C
Sbjct: 538 MEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGC 597

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
            +   ++ G Q    + +  G+  +V     ++++  R G L +A EV  S+    N   
Sbjct: 598 KNPEALELGRQIHMLIIES-GLQLDVNLGNALINMYIRCGSLQDAYEVFHSL-RHRNVMS 655

Query: 468 WEALLGACRKHGE 480
           W A++G     GE
Sbjct: 656 WTAMIGGFADQGE 668



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/545 (23%), Positives = 241/545 (44%), Gaps = 48/545 (8%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIP-TSEFSQKTILDIL-NTKCHTSWQHLKQAHAVILK 58
           +S KV   +     + E++S    P  +E ++   +D++ N     S    K+ HA +++
Sbjct: 51  VSVKVMRDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVE 110

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           +G   D ++S  L+  +   R  +   A +VF  + + +V  WNS++    +     +  
Sbjct: 111 AGVGPDIFLSNLLINMYVKCR--SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAF 168

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            L+ EM      P+K TY ++  AC      + G ++H+ +++ G   D  V++S + MY
Sbjct: 169 QLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY 228

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK---------- 228
                +  ARQ+     + DV+ +N ++  Y +   +E    LF     +          
Sbjct: 229 GKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYI 288

Query: 229 -----------------------NTGSYN------AMISGFARFGRFEEARKLFNEMNDK 259
                                  N G  +      A+ + F R G    A++      D+
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR 348

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D + ++A+I    + G+Y+EA E + +M+ D +   +     VL AC++  AL  G  IH
Sbjct: 349 DVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIH 408

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            H+       D  +G +L+ MYA+CG L  A ++F  M  +++ +WNA+I G A      
Sbjct: 409 SHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRG 468

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A++L+ +MQ E ++P R+TF  +LSAC ++     G      + +  GI         +
Sbjct: 469 EAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANAL 527

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           +++  R G + EA+ V        +   W +++    +HG  E      K+ LEM+ +  
Sbjct: 528 MNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSYEAAY---KLFLEMKKEGL 583

Query: 500 RCDDV 504
             D +
Sbjct: 584 EPDKI 588



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 13/241 (5%)

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C    +L +   IH  +    +  D  L   L++MY KC  +  A +VF  M  ++V +W
Sbjct: 92  CTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISW 151

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT-YMQ 424
           N++I   A  G    A +LF +MQ     P +IT+  +L+AC     ++ G +  +  ++
Sbjct: 152 NSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIE 211

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
             Y  DP V++   ++++ G+   L  A +V S +    +   +  +LG   +   VE  
Sbjct: 212 AGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYVE-- 266

Query: 485 ERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
           E +G +  +M  +    D V  +  L       T P  SM+D    IH+    +G +  +
Sbjct: 267 ECIG-LFGQMSSEGIPPDKVTYINLL----DAFTTP--SMLDEGKRIHKLAVNEGLNSDI 319

Query: 545 K 545
           +
Sbjct: 320 R 320


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/711 (37%), Positives = 376/711 (52%), Gaps = 91/711 (12%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS--RFSNFELAL 87
           S  T+   L++   TS  HLKQ HA IL+S   +    +  LVK   +S    S+ + AL
Sbjct: 22  SHHTLFSALSSA--TSLTHLKQVHAQILRSKLDRS---TSLLVKLVISSCALSSSLDYAL 76

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
            VFN + KP   + N  LR      EP + + +Y  M       ++F++P + KA S  +
Sbjct: 77  SVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVK 136

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           +  EG+++H    K G   D  V++  ++MYA  G + +AR + D     DV+ W+ +ID
Sbjct: 137 SLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMID 196

Query: 208 GYLKCGDIEGAKELFKSTKDKNTG-------------------SYNAMISGF-------- 240
           GY + G    A  LF+  K+ N                     SY  MI  F        
Sbjct: 197 GYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVV 256

Query: 241 ------------ARFGRFEEARKLFNEMN------------------------------- 257
                       A  G  + A  LF +M                                
Sbjct: 257 DPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV 316

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
            KD + WSA+I GY +    +EAL +FNEMQ   IKP +  +  V+ ACA LGALDQ  W
Sbjct: 317 KKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKW 376

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH  V +N       +  AL++MYAKCG L+ A ++F+ M  K V +W  MI   AMHG 
Sbjct: 377 IHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGD 436

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           A  A+  F +M+ E + P+ ITF  VL AC+HAG+++ G +    M   + I P+  HYG
Sbjct: 437 AGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYG 496

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           C+VDL GRA  L EA E++ +MP+ PN  +W +L+ ACR HGE+E GE   K LLE++P 
Sbjct: 497 CMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPD 556

Query: 498 N--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
           +              RR +DV ++RKLMK +GI    G S  ++N  IHEF   D SH  
Sbjct: 557 HDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKH 616

Query: 544 VKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGA 603
             EIY  L +++ KLK+ GYSPN+  +L D++EEEK+    +HSEKLA+ +G +    G+
Sbjct: 617 ADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGS 676

Query: 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IR+IKNLRVCEDCH+  KL SKV++R+I+VRDR R+HH+++G CSC D+W
Sbjct: 677 CIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/649 (37%), Positives = 369/649 (56%), Gaps = 82/649 (12%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+S+ ++   +D L T C TS    KQAHA++L++    +   S  L+   A S   +  
Sbjct: 4   PSSKCTKLISVDFLKTHC-TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN 62

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A K+F  +  P+ F+ N+++R       P+  +SLY  MV      + +TYP V  AC+
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A K G + H  V+KNG                 FG              SD+   NA
Sbjct: 123 RLGAVKLGRRFHCEVLKNG-----------------FG--------------SDLFVINA 151

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           LI  Y  CG                                F  A  +F+E   +D +TW
Sbjct: 152 LIQFYHNCGS-------------------------------FGCACDVFDESTVRDVVTW 180

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           + +I+ +   G  ++A ++ +EM + D ++P +  +  ++ ACA LG L++G ++H + K
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 324 ---RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
              +  I  D VL TALVDMYAKCG +D+A +VF  M+++ VFTWNA+IGGLAMHG  +D
Sbjct: 241 ELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGED 300

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AI LF +M+ +K+ PD +TF  +L AC+HAG++D GL     M+  + I+P +EHYGC+V
Sbjct: 301 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 360

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLL RA  + +A   I +MP++ N+ +W  LLGACR  G  +  E++G+ ++E+EP +  
Sbjct: 361 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCG 420

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                        + D   K+RK MK +GI+  PG S I++NG+IH+F  GD SH Q ++
Sbjct: 421 RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQ 480

Query: 547 IYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           IY M++++  ++ ++ G+ P ++ VLFDI+EEEKE +   HSEKLAIA G I+T  G+ I
Sbjct: 481 IYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPI 540

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R++KNLRVC DCHS  K+ SKV+ R+I+ RDR R+HHF+ G CSC DFW
Sbjct: 541 RIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/631 (37%), Positives = 380/631 (60%), Gaps = 51/631 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSN----FELALKVFNSVHKPNV 98
           +S+  LK  H  +L++    D +V+  L+  C  +S F+        A  +F+ +  PN+
Sbjct: 23  SSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNL 82

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158
           FV+N ++R      EP +    Y++M+     P+  T+P + KA S  E    G Q H+ 
Sbjct: 83  FVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQ 142

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
           +V+ G   DV+V+                               N+L+  Y  CG I  A
Sbjct: 143 IVRFGFQNDVYVE-------------------------------NSLVHMYANCGFIAAA 171

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
             +F     ++  S+ +M++G+ + G  E AR++F+EM  ++  TWS +I+GY K+  ++
Sbjct: 172 GRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFE 231

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           +A+++F  M+R+ +   + V+  V+++CA LGAL+ G   +++V ++ + V+ +LGTALV
Sbjct: 232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALV 291

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DM+ +CG ++ A  VFE +   +  +W+++I GLA+HG A  A+  F +M      P  +
Sbjct: 292 DMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDV 351

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  VLSAC+H G++++GL+    M++ +GI+P +EHYGCIVD+LGRAG LAEAE  I  
Sbjct: 352 TFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILK 411

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDV 504
           M ++PNA +  ALLGAC+ +   E  ER+G +L++++P++               + D +
Sbjct: 412 MHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKI 471

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS-HPQVKEIYLMLKKIIEKLKMEGY 563
             +R +MKE+ +K  PG S+I+++G I++F  GD   HP++ +I    ++I+ K+++ GY
Sbjct: 472 ESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGY 531

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
             N+    FD+DEEEKE++   HSEKLAIA+G + T PG TIR++KNLRVCEDCH+ TKL
Sbjct: 532 KGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKL 591

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IS+V+ R++IVRDR R+HHFRNG CSC D+W
Sbjct: 592 ISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 371/658 (56%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA + + G   + YV   ++  +  ++  + E AL+VF+ V   NV  W +++    
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMY--TKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +H         +++M+    +PN+ T+ ++  ACS   A K G Q+  H+++ G   D  
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKST 225
           V+++ + MYA  G +  A ++ +  SK +V+ WNA+I  Y++    + A    + L K  
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 226 KDKNTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N+ ++                                   NA++S F   G    A+
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LFN+M  +D ++W+ II G+ + G  + A + F  MQ   IKP K   + +L ACAS  
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL +G  +H  +   +   D ++GT L+ MY KCG ++ A +VF  +  K V++W +MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIA 689

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A HGR  +A+ELF++MQ+E ++PD ITF   LSACAHAG+I+ GL     M++ + I+
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIE 748

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P +EHYGC+VDL GRAG L EA E I  M +EP++ VW ALLGAC+ H  VE  E+  + 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            LE++P +                  +VAKMRK+M +RG+   PG S I+V+G +H F +
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYS 868

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D +HPQ +EI+  L+++  +++  GY P++  VL D+++ EKE A  YHSE+LAI +G 
Sbjct: 869 DDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGL 928

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + T P   I + KNLRVC DCH+ATK ISK+ KR II RD  R+HHF++G CSC DFW
Sbjct: 929 LKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 233/492 (47%), Gaps = 46/492 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ + +ILK+G   D +V   L+  H   +  +   A KVF+++   ++  W S++    
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHI--KCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H    +  +L+  M     +P+K  + ++ +AC+  EA ++G +VHA + + G   +++
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKST 225
           V ++ + MY   G +  A ++ D     +V+ W A+I G+ + G I+ A     ++ +S 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 226 KDKNTGSY-----------------------------------NAMISGFARFGRFEEAR 250
            + N  ++                                    A++S +A+ G  ++A 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F +++ ++ + W+A+I  Y +   Y  AL  F  + ++ IKP     + +L  C S  
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +L+ G W+H  + +  +  D  +  ALV M+  CG L  A  +F DM  +++ +WN +I 
Sbjct: 529 SLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIA 588

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG+   A + F  MQ   ++PD+ITF  +L+ACA    +  G + L  +      D
Sbjct: 589 GFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEG-RRLHALITEAAFD 647

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            +V     ++ +  + G + +A +V   +P + N   W +++    +HG    G+   ++
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGR---GKEALEL 703

Query: 491 LLEMEPQNRRCD 502
             +M+ +  + D
Sbjct: 704 FYQMQQEGVKPD 715



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 223/464 (48%), Gaps = 43/464 (9%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           I KSG   D ++  TL+  +A  +  N   A ++F+ + + +V+ WN +L   ++H    
Sbjct: 136 IKKSGVQPDIFMRNTLINMYA--KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
               L+ +MV    KP+K T+ ++  AC+      +G +++  ++K G   D+ V ++ I
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------- 228
            M+   G +  A ++ D+    D++ W ++I G  + G  + A  LF+  +++       
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 229 ------------------------------NTGSY--NAMISGFARFGRFEEARKLFNEM 256
                                         +T  Y   A++S + + G  E+A ++F+ +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             ++ ++W+A+I G+ + G   EA   FN+M    I+P +     +L AC+S  AL +G 
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            I DH+       D  + TAL+ MYAKCG L  A +VFE +  + V  WNAMI     H 
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           + D+A+  F  + +E ++P+  TF  +L+ C  +  ++ G + + ++    G++ ++   
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVS 552

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             +V +    G L  A+ + + MP + +   W  ++    +HG+
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK 595



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 189/384 (49%), Gaps = 43/384 (11%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY  + + C   +   +G +++ H+ K+G+  D+ ++++ I MYA  G    A+QI DD 
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 195 SKSDVICWNALIDGYLKCG-----------------------------------DIEGAK 219
            + DV  WN L+ GY++ G                                   +++  +
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 220 ELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           EL+    K+  D +     A+I+   + G   +A K+F+ +  +D +TW+++I G  + G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
            +K+A  +F  M+ + ++P K     +L AC    AL+QG  +H  +K      +  +GT
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGT 351

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           A++ MY KCG ++ A +VF+ +K + V +W AMI G A HGR D+A   F KM    + P
Sbjct: 352 AILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411

Query: 396 DRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           +R+TF  +L AC+    + RG Q   + ++  YG D  V     ++ +  + G L +A  
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHR 469

Query: 455 VISSMPMEPNAAVWEALLGACRKH 478
           V   +  + N   W A++ A  +H
Sbjct: 470 VFEKISKQ-NVVAWNAMITAYVQH 492



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 169/309 (54%), Gaps = 10/309 (3%)

Query: 182 GCVNKARQILDDGSKSDVI----CWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSY 233
           G  N+A Q+L+    S +      ++AL+   +K  ++   + ++    KS    +    
Sbjct: 89  GQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMR 148

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I+ +A+ G    A+++F++M +KD  +W+ ++ GY + G Y+EA ++  +M +D +K
Sbjct: 149 NTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK 208

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P K     +L ACA    +D+G  +++ + +     D  +GTAL++M+ KCG +  A KV
Sbjct: 209 PDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+++  +++ TW +MI GLA HGR   A  LF +M+ E ++PD++ F  +L AC H   +
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           ++G +    M+++ G D E+     I+ +  + G + +A EV   +    N   W A++ 
Sbjct: 329 EQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIA 386

Query: 474 ACRKHGEVE 482
              +HG ++
Sbjct: 387 GFAQHGRID 395



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD    +A+++  +K G + EA++V   +    I+  +   S +L  C     L  G  I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           ++H+K++ +  D  +   L++MYAKCG    A ++F+DM+ K+V++WN ++GG   HG  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           ++A +L  +M ++ ++PD+ TF  +L+ACA A  +D+G +    + +  G D ++     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++++  + G + +A +V  ++P   +   W +++    +HG     ++   +   ME + 
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRF---KQACNLFQRMEEEG 307

Query: 499 RRCDDVA 505
            + D VA
Sbjct: 308 VQPDKVA 314


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/626 (39%), Positives = 362/626 (57%), Gaps = 49/626 (7%)

Query: 44  TSWQHLKQAHAVILKSGH-FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           TS   LKQ HA +LK+        +S     C  NS FS  +L   +F  +    V  WN
Sbjct: 26  TSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKL---IFQLLDASEVTHWN 82

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           + LR+  E + P   ISL+  +   D  P+ +T   V KACS     + G  VH +V K 
Sbjct: 83  TCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKL 142

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           GL                               +S++   N ++  Y  CG+I  A+++F
Sbjct: 143 GL-------------------------------QSNMFLQNMIVHLYALCGEIGVARKVF 171

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                ++  ++N MI+   + G  E A KLF EM +++  +W+++I GY + G  KEA++
Sbjct: 172 DKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAID 231

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F EM+   + P +  +  VL ACA +G L  G  IHD   R+    +  +   L+DMY 
Sbjct: 232 LFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYV 291

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG L+ A ++F++M+ + V +W+AMI GLA HGRA+DA+ LF KM    ++P+ +TF  
Sbjct: 292 KCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIG 351

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +L AC+H GM+++G +    M + YGI P +EHYGC+VDL  RAG L EA E I +MP+ 
Sbjct: 352 ILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIA 411

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           PN  VW ALLG C+ H  ++  E   + L +++P N               R +DVA++R
Sbjct: 412 PNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVR 471

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           KLM++RG+K  PG S I V GV++ F  GD +HPQ +EI+   +K+++++K++GY PN+S
Sbjct: 472 KLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTS 531

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL D++E++KE     HSEKLA+ FG I T PG  IR++KNLRVCEDCH+A K+IS V 
Sbjct: 532 VVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVS 591

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+I+VRDR R+H F+NG CSC D+W
Sbjct: 592 TREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 345/592 (58%), Gaps = 47/592 (7%)

Query: 79  RFSNFELALKVFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           R+SN      +FN  V K NVF WNSV+       +    +  +S M  +  KPN+ T+P
Sbjct: 21  RYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFP 80

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
              K+CS       G Q H                               +Q L  G + 
Sbjct: 81  CAIKSCSALLDLHSGRQAH-------------------------------QQALIFGFEP 109

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           D+   +AL+D Y KCG++  A+ LF     +N  S+ +MI+G+ +      A ++F+ M 
Sbjct: 110 DLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMA 169

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGI 316
           ++D I+W++II  Y ++G   E++E+F+ M +D +I      LS VL ACA  G+   G 
Sbjct: 170 ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGK 229

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IHD V +  +  +  +GT+++DMY KCG+++MA K F+ M+ K V +W+AM+ G  MHG
Sbjct: 230 CIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHG 289

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
            A +A+E+F++M    ++P+ ITF  VL+AC+HAG+++ G      M   + ++P VEHY
Sbjct: 290 HAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY 349

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLLGRAGYL EA ++I  M + P+  VW ALLGACR H  V+ GE   + L E++P
Sbjct: 350 GCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP 409

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
           +N               R +DV +MR LMK  G+   PG S++D+ G +H F  GD  HP
Sbjct: 410 KNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHP 469

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
           Q ++IY  L+K+  KL+  GY P+ + VL D+  EEKE   + HSEKLA+AFG +NT PG
Sbjct: 470 QHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPG 529

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            TI +IKNLRVC DCH+A K ISK+  R+I+VRD  R+HHFR+G CSC D+W
Sbjct: 530 TTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 24/238 (10%)

Query: 29  FSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           ++  T+  +L    H+  Q L K  H  ++K G   + +V  +++  +   +    E+A 
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYC--KCGKVEMAR 264

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           K F+ + + NV  W++++     H      + ++ EM     KPN  T+ +V  ACS   
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDV 199
             +EG     H  K  +  +  V+  G++ Y C        G + +A  ++     + D 
Sbjct: 325 LLEEG----WHWFK-AMSHEFDVE-PGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDF 378

Query: 200 ICWNALIDG-----YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           + W AL+        +  G+I  A++LF+    KN G Y  + + +A  GR+E+  ++
Sbjct: 379 VVWGALLGACRMHKNVDLGEIS-ARKLFE-LDPKNCGYYVLLSNIYADAGRWEDVERM 434


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/589 (41%), Positives = 341/589 (57%), Gaps = 50/589 (8%)

Query: 84  ELALKVFNSVH--KPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVF 140
           E A ++FN V   + ++  W S + +C E NE     + L+ EM G     ++    +  
Sbjct: 219 EKARRIFNGVRGRERDMVSW-SAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL 277

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
            ACS     + G  VH   VK G+   V +K                             
Sbjct: 278 SACSRVLNVEMGRWVHGLAVKVGVEDYVSLK----------------------------- 308

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDK-NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
             NALI  Y  CG+I  A+ +F    +  +  S+N+MISG+ R G  ++A  LF  M +K
Sbjct: 309 --NALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEK 366

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D ++WSA+I GY +   + EAL +F EMQ   ++P +  L   ++AC  L  LD G WIH
Sbjct: 367 DVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIH 426

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            ++ RN + V+ +L T L+DMY KCG ++ A +VF  M+ K V TWNA+I GLAM+G  +
Sbjct: 427 AYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVE 486

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            ++ +F  M++    P+ ITF  VL AC H G+++ G      M   + I+  ++HYGC+
Sbjct: 487 QSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCM 546

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           VDLLGRAG L EAEE+I SMPM P+ A W ALLGACRKH + E GERLG+ L++++P + 
Sbjct: 547 VDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHD 606

Query: 500 --------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                            +V ++R +M + G+   PG SMI+ NG +HEF  GD +HPQ+ 
Sbjct: 607 GFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQIN 666

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           +I  ML  +  KLK+EGY P +S+V  DIDEEEKETA   HSEKLA+AFG I   P   I
Sbjct: 667 DIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPI 726

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RV KNLR+C DCH+  KLISK F RDI+VRDR R+HHF++G CSC DFW
Sbjct: 727 RVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 248/486 (51%), Gaps = 39/486 (8%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSR-FSNFELALKVFN 91
           + LD L   C    +H KQ  +  + +G   D Y +  L+   ++S     F  +L++FN
Sbjct: 4   STLDSLLQSCKCP-RHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFN 62

Query: 92  SVHKPNVFVWNSVLRACLE-HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
            +  PN F WN+++RA L   N P + +  Y   +   +KP+ +TYP + + C+   ++ 
Sbjct: 63  HLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEF 122

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG Q+HAH V +G  GDV+V+++ + +YA  G V  AR++ ++    D++ WN L+ GY+
Sbjct: 123 EGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYV 182

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM--NDKDEITWSAII 268
           + G++E A+ +F+   ++NT + N+MI+ F R G  E+AR++FN +   ++D ++WSA++
Sbjct: 183 QAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             Y ++   +EAL +F EM+   +   + V+   L+AC+ +  ++ G W+H    +  + 
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFED-------------------------------- 356
               L  AL+ +Y+ CG +  A ++F+D                                
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           M  K+V +W+AMI G A H    +A+ LF +MQ   +RPD       +SAC H   +D G
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
                Y+ +   +   V     ++D+  + G +  A EV  +M  E   + W A++    
Sbjct: 423 KWIHAYISR-NKLQVNVILSTTLIDMYMKCGCVENALEVFYAME-EKGVSTWNAVILGLA 480

Query: 477 KHGEVE 482
            +G VE
Sbjct: 481 MNGSVE 486



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + + A  +F S+ + +V  W++++    +H      ++L+ EM     +P++    +
Sbjct: 349 RCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVS 408

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              AC+       G  +HA++ +N L  +V + ++ I MY   GCV  A ++     +  
Sbjct: 409 AISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKG 468

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
           V  WNA+I G    G +E +  +F   K   T     ++  ++      G   + R  FN
Sbjct: 469 VSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFN 528

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            M  + +I      +  ++D   + G  KEA E+ + M    + P       +L AC
Sbjct: 529 SMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSM---PMAPDVATWGALLGAC 582



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 3/137 (2%)

Query: 352 KVFEDMKMKEVFTWNAMI-GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           ++F  ++    FTWN ++   L +      A+  +        +PD  T+  +L  CA  
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
                G Q   +     G D +V     +++L    G +  A  V    P+  +   W  
Sbjct: 119 VSEFEGRQLHAHAVS-SGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPV-LDLVSWNT 176

Query: 471 LLGACRKHGEVEFGERL 487
           LL    + GEVE  ER+
Sbjct: 177 LLAGYVQAGEVEEAERV 193


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 371/658 (56%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA + + G   + YV   ++  +  ++  + E AL+VF+ V   NV  W +++    
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMY--TKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +H         +++M+    +PN+ T+ ++  ACS   A K G Q+  H+++ G   D  
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKST 225
           V+++ + MYA  G +  A ++ +  SK +V+ WNA+I  Y++    + A    + L K  
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 226 KDKNTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N+ ++                                   NA++S F   G    A+
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LFN+M  +D ++W+ II G+ + G  + A + F  MQ   IKP K   + +L ACAS  
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL +G  +H  +   +   D ++GT L+ MY KCG ++ A +VF  +  K V++W +MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIT 689

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A HGR  +A+ELF++MQ+E ++PD ITF   LSACAHAG+I+ GL     M++ + I+
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIE 748

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P +EHYGC+VDL GRAG L EA E I  M +EP++ VW ALLGAC+ H  VE  E+  + 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            LE++P +                  +VAKMRK+M +RG+   PG S I+V+G +H F +
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYS 868

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D +HPQ +EI+  L+++  +++  GY P++  VL D+++ EKE A  YHSE+LAI +G 
Sbjct: 869 DDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGL 928

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + T P   I + KNLRVC DCH+ATK ISK+ KR II RD  R+HHF++G CSC DFW
Sbjct: 929 LKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 223/464 (48%), Gaps = 43/464 (9%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           I KSG   D ++  TL+  +A  +  N   A ++F+ + + +V+ WN +L   ++H    
Sbjct: 136 IKKSGVQPDIFMWNTLINMYA--KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
               L+ +MV    KP+K T+ ++  AC+      +G +++  ++K G   D+ V ++ I
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------- 228
            M+   G +  A ++ D+    D++ W ++I G  + G  + A  LF+  +++       
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 229 ------------------------------NTGSY--NAMISGFARFGRFEEARKLFNEM 256
                                         +T  Y   A++S + + G  E+A ++F+ +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             ++ ++W+A+I G+ + G   EA   FN+M    I+P +     +L AC+S  AL +G 
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            I DH+       D  + TAL+ MYAKCG L  A +VFE +  + V  WNAMI     H 
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           + D+A+  F  + +E ++P+  TF  +L+ C  +  ++ G + + ++    G++ ++   
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVS 552

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             +V +    G L  A+ + + MP + +   W  ++    +HG+
Sbjct: 553 NALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK 595



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 188/384 (48%), Gaps = 43/384 (11%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY  + + C   +   +G +++ H+ K+G+  D+ + ++ I MYA  G    A+QI DD 
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 195 SKSDVICWNALIDGYLKCG-----------------------------------DIEGAK 219
            + DV  WN L+ GY++ G                                   +++  +
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 220 ELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           EL+    K+  D +     A+I+   + G   +A K+F+ +  +D +TW+++I G  + G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
            +K+A  +F  M+ + ++P K     +L AC    AL+QG  +H  +K      +  +GT
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGT 351

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           A++ MY KCG ++ A +VF+ +K + V +W AMI G A HGR D+A   F KM    + P
Sbjct: 352 AILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411

Query: 396 DRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           +R+TF  +L AC+    + RG Q   + ++  YG D  V     ++ +  + G L +A  
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHR 469

Query: 455 VISSMPMEPNAAVWEALLGACRKH 478
           V   +  + N   W A++ A  +H
Sbjct: 470 VFEKISKQ-NVVAWNAMITAYVQH 492



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 170/309 (55%), Gaps = 10/309 (3%)

Query: 182 GCVNKARQILDDGSKSDVI----CWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSY 233
           G  N+A Q+L+    S +      ++AL+   +K  ++   + ++    KS    +   +
Sbjct: 89  GQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMW 148

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I+ +A+ G    A+++F++M +KD  +W+ ++ GY + G Y+EA ++  +M +D +K
Sbjct: 149 NTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK 208

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P K     +L ACA    +D+G  +++ + +     D  +GTAL++M+ KCG +  A KV
Sbjct: 209 PDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+++  +++ TW +MI GLA HGR   A  LF +M+ E ++PD++ F  +L AC H   +
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           ++G +    M+++ G D E+     I+ +  + G + +A EV   +    N   W A++ 
Sbjct: 329 EQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKGRNVVSWTAMIA 386

Query: 474 ACRKHGEVE 482
              +HG ++
Sbjct: 387 GFAQHGRID 395



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD    +A+++  +K G + EA++V   +    I+  +   S +L  C     L  G  I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           ++H+K++ +  D  +   L++MYAKCG    A ++F+DM+ K+V++WN ++GG   HG  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           ++A +L  +M ++ ++PD+ TF  +L+ACA A  +D+G +    + +  G D ++     
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++++  + G + +A +V  ++P   +   W +++    +HG     ++   +   ME + 
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRF---KQACNLFQRMEEEG 307

Query: 499 RRCDDVA 505
            + D VA
Sbjct: 308 VQPDKVA 314


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/691 (35%), Positives = 378/691 (54%), Gaps = 58/691 (8%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           ++S+  I   + +   +LD   T   +     K+ H + ++ G   D  V   LV     
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTP--SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCV- 275

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            R  + + A + F  +   +V V+N+++ A  +H         Y  M       N+ TY 
Sbjct: 276 -RCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYL 334

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           ++  ACS ++A + G  +H+H+ ++G   DV + ++ I MYA  G + KAR++     K 
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK-----------------NTGSY------- 233
           D+I WNA+I GY +  D   A  L+K  + +                 N+ +Y       
Sbjct: 395 DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH 454

Query: 234 ---------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                          NA+++ + R G   EA+ +F     +D I+W+++I G+ + G Y+
Sbjct: 455 EDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYE 514

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A ++F EMQ ++++P     + VL+ C +  AL+ G  IH  +  + + +D  LG AL+
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DR 397
           +MY +CG L  A  VF  ++ ++V +W AMIGG A  G    AIELF++MQ E  RP D 
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDG 634

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            TF  +LSAC HAG++  G Q  + M+  YG+ P +EHYGC+V LLGRA    EAE +I+
Sbjct: 635 STFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLIN 694

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
            MP  P+AAVWE LLGACR HG +   E      L++  +N               R DD
Sbjct: 695 QMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDD 754

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           VAK+R++M+ RGI+  PG S I+V+ +IHEF   D SHP+  EIY  LK++  +++  GY
Sbjct: 755 VAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 814

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
            P++  VL D+ +  +ET+   HSE+LAIA+G I T PG  IR+ KNLR+C DCH+A+K 
Sbjct: 815 FPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKF 874

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ISK+  R+II RD  R+H F+NGKCSC D+W
Sbjct: 875 ISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 240/525 (45%), Gaps = 47/525 (8%)

Query: 17  EEISATNIP-TSEFSQKTILDIL-NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKC 74
           E++S T+ P  +E  + T + +L N          K+ HA ++++G   D ++S  L+  
Sbjct: 12  EDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINM 71

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF 134
           +   R  +   A +VF  + + +V  WNS++    +     +   L+ EM      PNK 
Sbjct: 72  YVKCR--SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKI 129

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY ++  AC      + G ++H+ ++K G   D  V++S + MY   G + +ARQ+    
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI 189

Query: 195 SKSDVICWNA-----------------------------------LIDGYLKCGDIEGAK 219
           S  DV+ +N                                    L+D +     ++  K
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK 249

Query: 220 ELFKSTKDKNTGS----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
            + K T ++   S      A+++   R G  + A++ F  + D+D + ++A+I    + G
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG 309

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           +  EA E +  M+ D +   +     +L AC++  AL+ G  IH H+  +    D  +G 
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGN 369

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+ MYA+CG L  A ++F  M  +++ +WNA+I G A      +A+ L+ +MQ E ++P
Sbjct: 370 ALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
            R+TF  +LSACA++     G      + +  GI         ++++  R G L EA+ V
Sbjct: 430 GRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL--EMEPQN 498
                   +   W +++    +HG  E   +L + +   E+EP N
Sbjct: 489 FEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/572 (40%), Positives = 347/572 (60%), Gaps = 51/572 (8%)

Query: 100 VWNSVLRACLEHNEPWRV---ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +WN+++     HN   R       + +MV   +     TY +V  AC   +    G+QVH
Sbjct: 128 MWNALISG---HNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVH 184

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
             V+++G+  D  V+                               NAL+D Y +CGD++
Sbjct: 185 KRVLESGVLPDQRVE-------------------------------NALVDMYAECGDMD 213

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A  LF+  + ++  S+ ++ISG  R G+ + AR LF+ M ++D I W+A+IDGY + G 
Sbjct: 214 AAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGR 273

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           +++ALE F  MQ  K++  +F +  V+ ACA LGAL+ G W   ++ R  I +D  +G A
Sbjct: 274 FRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNA 333

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY+KCG ++ A  VF+DM  ++ FTW A+I GLA++GR ++AI++F++M R    PD
Sbjct: 334 LIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPD 393

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            +TF  VL+AC HAG++D+G +    M + Y I P V HYGC++D+LGRAG L EA + I
Sbjct: 394 EVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTI 453

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
             MPM+PN+ +W  LL +CR +G  E GE   + LLE++P N               R  
Sbjct: 454 DKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWK 513

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DV ++R+++ E+GIK  PG SMI++NG+IHEF   D SHP  KEIY  L+ ++  L+  G
Sbjct: 514 DVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRNAG 573

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+ ++VL ++ EEEK+    +HSEKLA+ F  + ++    IR++KNLR+C DCH+A K
Sbjct: 574 YVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIK 633

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LISK++ R++IVRDR R+HHFR+G CSC D+W
Sbjct: 634 LISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 32/229 (13%)

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           + W+A+I G+ + G ++ +   F +M R            VL+AC     L  G+ +H  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD-- 379
           V  + +  D  +  ALVDMYA+CG +D AW +FE M+M+ + +W ++I GL   G+ D  
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 380 -----------------------------DAIELFFKMQREKMRPDRITFACVLSACAHA 410
                                        DA+E F  MQ  K+R D  T   V++ACA  
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           G ++ G  A  YM ++ GI  +V     ++D+  + G +  A +V   M
Sbjct: 307 GALETGEWARIYMGRL-GIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/470 (47%), Positives = 313/470 (66%), Gaps = 17/470 (3%)

Query: 202 WNALIDGYLKCGDIEGAKELF---KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           +NAL+  YL  G  + A  LF    S  D +  S+  M+ G  R G  ++ARKLF+ M +
Sbjct: 130 FNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPE 189

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           ++ I+W+A+I GY K G + +ALEVF++M+   I+   FV +  + AC   G L +G  +
Sbjct: 190 RNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREV 249

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  V+++ I +D  L TA+VDMY KCG ++ AW VF+ +  K + +WN MIGGLA+HGR 
Sbjct: 250 HRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRC 309

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            DAIELF +M+RE + PD +T   VL+ACAH GM+  G     Y+ Q YGI+P++EHYGC
Sbjct: 310 KDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGC 369

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDL GRAG L EA++VI  MPMEP+  V  AL GAC+ H +++ GE +G  ++E++PQN
Sbjct: 370 MVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQN 429

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          +  DVAK+R+LM ER +    G S+I+++G + EF+ G   H Q 
Sbjct: 430 SGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQE 489

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           KEI+  +K ++ K+++EGY P++S VL DI EEEKE   +YHSEKLAIAFG + T PG T
Sbjct: 490 KEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDT 549

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+ KNLRVC DCH ATK IS+VF+R+I+VRDR R+HHF++G CSC D+W
Sbjct: 550 VRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 12/246 (4%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    + A K+F+ + + N+  WN+++   ++       + ++ +M  +  + N F   +
Sbjct: 173 RLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAAS 232

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              AC+       G +VH  V ++G+  D  + ++ + MY   G V +A  +        
Sbjct: 233 AVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKG 292

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA----MISGFARFGRFEEARKLFN 254
           +  WN +I G    G  + A ELF   + ++    +     +++  A  G   +    FN
Sbjct: 293 LTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFN 352

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            +  +  I      +  ++D + + G   EA +V ++M    ++P   VL  +  AC   
Sbjct: 353 YIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDM---PMEPDIGVLGALFGACKIH 409

Query: 310 GALDQG 315
             LD G
Sbjct: 410 RDLDLG 415


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/567 (40%), Positives = 334/567 (58%), Gaps = 78/567 (13%)

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++R  LE       +  YS M+  D  P+K ++  + ++C+I+   + G   H  ++K G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                                           + D+I    L+D Y              
Sbjct: 61  F-------------------------------EYDMILQTGLLDFY-------------- 75

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE--ITWSAIIDGYTKDGYYKEAL 281
                            A+ G  EEAR LF+ M +++   +TW+ +I  Y + G +  A+
Sbjct: 76  -----------------AKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAI 118

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F +MQ + +KP +  +  +L+ACA LGALD G WIH +++   + +D VLG AL+DMY
Sbjct: 119 SMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMY 178

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            KCG L+ A  VF  +  K +F WN++I GL M+GR ++AI  F  M++E ++PD +TF 
Sbjct: 179 CKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFV 238

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +LS C+H+G++  G +  + M  +YG++P VEHYGC+VDLLGRAGYL EA E+I +MPM
Sbjct: 239 GILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPM 298

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +PN+ V  +LL AC+ H + + GE++ + LLE++P +               R DDV   
Sbjct: 299 KPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTC 358

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RKLM +RG+   PG S I+VN ++HEF  GD SHPQ  +I   L +I ++LK +G+ PN+
Sbjct: 359 RKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNT 418

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           + VL DI+EEEKE A +YHSE++A+AFG ++T PG TIRV+KNLR C DCHSA KLIS  
Sbjct: 419 ANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNA 478

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           FKR+IIVRDR R+HHFRNG CSCND+W
Sbjct: 479 FKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 18/291 (6%)

Query: 29  FSQKTILDILNTKCHTSWQ-HLKQA-HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
              KT   ++   C  S +  L +A H  I+K G   D  +   L+  +A   +   E A
Sbjct: 27  LPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGY--VEEA 84

Query: 87  LKVFNSV--HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
             +F+++     N   WN+++ A ++  E    IS++ +M   + KP + T  ++  AC+
Sbjct: 85  RNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 144

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A   G  +H ++    L  DV + ++ I MY   G +  A  +    S+ ++ CWN+
Sbjct: 145 HLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNS 204

Query: 205 LIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G    G  E A   F    K     +  ++  ++SG +  G     ++ F+EM    
Sbjct: 205 IIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVY 264

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +      +  ++D   + GY KEALE+   M    +KP   VL  +L AC
Sbjct: 265 GLEPGVEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 312


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/630 (39%), Positives = 360/630 (57%), Gaps = 90/630 (14%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN----------VFV 100
           Q H++ILK G    H+    L K  A S   N   A+   +SV  PN           F+
Sbjct: 140 QIHSLILKLGL---HHNPLVLTKFAATSSHFN---AVHYASSVLFPNDQTTPPPSHDAFL 193

Query: 101 WNSVLRACLE--HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158
           +N+++RA  +  H++P   +  Y+ M      PNKFT+P V KAC+     + G  VHA 
Sbjct: 194 FNTLIRAFAQTTHSKP-HALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHAS 252

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
           +VK G   D HV+++ + MY C  C         DGS   V                   
Sbjct: 253 MVKFGFEEDPHVRNTLVHMYCC--CCQ-------DGSSGPV------------------- 284

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                                         A+K+F+E   KD +TWSA+I GY + G   
Sbjct: 285 -----------------------------SAKKVFDESPVKDSVTWSAMIGGYARAGNSA 315

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+ +F EMQ   + P +  +  VL+ACA LGAL+ G W+  +++R +I     L  AL+
Sbjct: 316 RAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALI 375

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DM+AKCG +D A KVF +MK++ + +W +MI GLAMHGR  +A+ +F +M  + + PD +
Sbjct: 376 DMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDV 435

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            F  VLSAC+H+G++D+G      M+ M+ I P++EHYGC+VD+L RAG + EA E + +
Sbjct: 436 AFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRA 495

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDV 504
           MP+EPN  +W +++ AC   GE++ GE + K L+  EP +               R +  
Sbjct: 496 MPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKK 555

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
            K+R++M  +G++  PGS+MI++N  I+EF  GD SH Q KEIY M++++  ++K  GY 
Sbjct: 556 TKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYV 615

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P +SQVL DIDEE+KE A   HSEKLAIAF  ++T PG  IR++KNLRVCEDCHSATK I
Sbjct: 616 PTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFI 675

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SKV+ R+I+VRDR R+HHF+NG CSC DFW
Sbjct: 676 SKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/680 (36%), Positives = 378/680 (55%), Gaps = 57/680 (8%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           +F+  +IL   ++    +W   ++ H  ++++G   D  V   L+  +A  +  +   A 
Sbjct: 129 KFTFVSILSACSSPAVLNWG--REIHVRVMEAGLANDTTVGNALISMYA--KCGSVRDAR 184

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+++   +   W ++  A  E       +  Y  M+    +P++ TY  V  AC    
Sbjct: 185 RVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLA 244

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           A ++G Q+HAH+V++    DV V ++  +MY   G    AR++ +  S  DVI WN +I 
Sbjct: 245 ALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIR 304

Query: 208 GYLKCGDIEGAKELF------------------------------------KSTKDKNTG 231
           G++  G +E A   F                                    ++ KD    
Sbjct: 305 GFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS 364

Query: 232 SY---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                NA+I+ +++ G  ++AR++F+ M  +D ++W+ ++  Y       E+   F +M 
Sbjct: 365 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQML 424

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           +  +K  K    CVL AC++  AL  G  IH  V +  +  D  +  AL+ MY KCG ++
Sbjct: 425 QQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVE 484

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A +VFE M M++V TWN +IGGL  +GR  +A++ +  M+ E MRP+  TF  VLSAC 
Sbjct: 485 DAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACR 544

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
              +++ G +   +M + YGI P  +HY C+VD+L RAG+L EAE+VI ++P++P+AA+W
Sbjct: 545 VCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMW 604

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKER 514
            ALL ACR H  VE GER  +  L++EPQN                  DVAK+RK MKER
Sbjct: 605 GALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKER 664

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  PG S I++ G +H F   D SHP+ +EIY  L+ + +++K  GY P++  V+ D+
Sbjct: 665 GVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDL 724

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D+E KE A  +HSEKLAIA+G I+T PG  IR+ KNLRVC DCH+ATK ISK+ KR+II 
Sbjct: 725 DDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIA 784

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF+NG+CSC D+W
Sbjct: 785 RDAHRFHHFKNGECSCGDYW 804



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 192/381 (50%), Gaps = 41/381 (10%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + + Y  + ++C   +    G QVH H+++ G+  +V++ ++ +++YA  G VN+ARQ+ 
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----------------------- 228
           D  S   V+ WN +I GY   G  + A  LF   + +                       
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 229 ----------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                           +T   NA+IS +A+ G   +AR++F+ M  +DE++W+ +   Y 
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           + GY +E+L+ ++ M +++++P +     VL+AC SL AL++G  IH H+  +    D  
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVR 266

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           + TAL  MY KCG    A +VFE +  ++V  WN MI G    G+ ++A   F +M  E 
Sbjct: 267 VSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG 326

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + PDR T+  VLSACA  G + RG + +       G+  +V     ++++  +AG + +A
Sbjct: 327 VAPDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDA 385

Query: 453 EEVISSMPMEPNAAVWEALLG 473
            +V   MP + +   W  LLG
Sbjct: 386 RQVFDRMP-KRDVVSWTTLLG 405



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 227/509 (44%), Gaps = 74/509 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  IL+ G   + Y++ TL+K +A+    +   A ++F+     +V  WN ++    
Sbjct: 48  KQVHEHILRCGVKPNVYITNTLLKLYAHC--GSVNEARQLFDKFSNKSVVSWNVMISGYA 105

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                    +L++ M     +P+KFT+ ++  ACS       G ++H  V++ GL  D  
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I MYA  G V  AR++ D  +  D + W  L   Y + G  E + + + +   + 
Sbjct: 166 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQER 225

Query: 230 T--------------GSYNAMISG-------------------------FARFGRFEEAR 250
                          GS  A+  G                         + + G F++AR
Sbjct: 226 VRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAR 285

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F  ++ +D I W+ +I G+   G  +EA   F+ M  + + P +   + VL+ACA  G
Sbjct: 286 EVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPG 345

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L +G  IH    ++ +  D   G AL++MY+K G +  A +VF+ M  ++V +W  ++G
Sbjct: 346 GLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLG 405

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-----------HAGMIDRGLQA 419
             A   +  ++   F +M ++ ++ ++IT+ CVL AC+           HA ++  GL A
Sbjct: 406 RYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLA 465

Query: 420 ----LTYMQQMYGIDPEVEH---------------YGCIVDLLGRAGYLAEA---EEVIS 457
                  +  MY     VE                +  ++  LG+ G   EA    EV+ 
Sbjct: 466 DLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMK 525

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGER 486
           S  M PNAA +  +L ACR    VE G R
Sbjct: 526 SEGMRPNAATFVNVLSACRVCNLVEEGRR 554



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 147/294 (50%), Gaps = 8/294 (2%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G + D   +  L+   +K  D+   K+    + +     N    N ++  +A  G   EA
Sbjct: 23  GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF++ ++K  ++W+ +I GY   G  +EA  +F  MQ+++++P KF    +L+AC+S 
Sbjct: 83  RQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSP 142

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             L+ G  IH  V    +  D  +G AL+ MYAKCG +  A +VF+ M  ++  +W  + 
Sbjct: 143 AVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 202

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYG 428
           G  A  G  +++++ +  M +E++RP RIT+  VLSAC     +++G Q   ++ +  Y 
Sbjct: 203 GAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            D  V     +  +  + G   +A EV   +    +   W  ++      G++E
Sbjct: 263 SDVRVS--TALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLE 313


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/623 (39%), Positives = 360/623 (57%), Gaps = 51/623 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS-NFELALKVFNSV--HKPNVFVWNSVL 105
           L+Q HA I+K+           L +      F+ +F  A ++F  V   KP  FVWNS L
Sbjct: 44  LRQVHAQIIKTNAPLSIL---PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCL 100

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           +A  E + P   I L+  +   D  P+ FT  +V +AC        G  +H  V K G  
Sbjct: 101 KALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR 160

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            ++++++  + +YA                                CG++  A+ LF+  
Sbjct: 161 SNLYLQNMIVHLYA-------------------------------SCGEMGEARLLFEKM 189

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
             ++  ++N MI+   + G  E A  LF+ M +++  +W+++I GY + G  KEA+ +F 
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +M+   +K  +  +  VLAACA LGALD G+ IH++  R+    +  +   L+DMY KCG
Sbjct: 250 KMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCG 309

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L+ A KVFE+M+ + V +W+AMIGGLAMHGRA++A+ LF  M +  + P+ +TF  +L 
Sbjct: 310 CLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLH 369

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H G+I  G +    M + YGI P++EHYGC+VDLL RAG L EA E I +MPM+PN 
Sbjct: 370 ACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNG 429

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
            VW ALLGACR H  VE  E   K LLE++P N               R +D A++RK M
Sbjct: 430 VVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFM 489

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K+R +K  PG S I V+GV+HEF  G+ SHP  ++I+   ++++E+++++GY PN+S VL
Sbjct: 490 KDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            DI+E EK      HSEKLA+ FG +NT     IR++KNLR+CEDCHSA KLIS +  R+
Sbjct: 550 LDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNRE 609

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I+VRDR R+H F +  CSC D+W
Sbjct: 610 IVVRDRNRFHCFNDNSCSCRDYW 632


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/658 (37%), Positives = 372/658 (56%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA + + G   + YV   L+  +  ++  + E AL+VFN V   NV  W +++    
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMY--TKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +H         +++M+    +PN+ T+ ++  ACS   A K+G Q+H  ++K G   D  
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V+++ + MYA  G +  AR + +  SK +V+ WNA+I  Y++    + A   F       
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 223 ---------------KSTKDKNTGSY-----------------NAMISGFARFGRFEEAR 250
                          KS      G +                 NA++S F   G    A 
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LFN+M ++D ++W+ II G+ + G  + A + F  MQ   +KP +   + +L ACAS  
Sbjct: 564 NLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPE 623

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL +G  +H  +   ++  D V+GT L+ MY KCG +D A  VF ++  K V++W +MI 
Sbjct: 624 ALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMIT 683

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A HGR  +A+ELF +MQ+E ++PD ITF   LSACAHAG+I  GL     M+  + I+
Sbjct: 684 GYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIE 742

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P +EHYGC+VDL GRAG L EA E I+ M ++P++ +W ALLGAC+ H +VE  E++ + 
Sbjct: 743 PRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQK 802

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            LE++P +                  +V KMRK+M +RG+   PG S I+V+G +H F +
Sbjct: 803 KLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCS 862

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D +HPQ++EI+  L ++  ++K  GY P++  VL D+++ EKE A  +HSE+LAIA+G 
Sbjct: 863 DDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGL 922

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + T P   I + KNLRVC DCH+ATKLISK+ KR II RD  R+HHF++G CSC DFW
Sbjct: 923 LKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 230/488 (47%), Gaps = 46/488 (9%)

Query: 54  AVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE 113
           ++IL +G   D +V   L+  H   +    + ALKVFN++ + ++  W S++     H +
Sbjct: 229 SLILNAGWDTDLFVGTALINMHI--KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQ 286

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
             +  +L+  M     +P+K  + ++ KAC+  EA ++G +VHA + + GL  +++V ++
Sbjct: 287 FKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTA 346

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDKN 229
            + MY   G +  A ++ +     +V+ W A+I G+ + G +E A     ++ +S  + N
Sbjct: 347 LLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPN 406

Query: 230 TGSY-----------------------------------NAMISGFARFGRFEEARKLFN 254
             ++                                    A++S +A+ G   +AR +F 
Sbjct: 407 RVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFE 466

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            ++ ++ + W+A+I  Y +   Y  A+  F  + ++ IKP     + +L  C S  AL+ 
Sbjct: 467 RISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALEL 526

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G W+   + R     D  +  ALV M+  CG L  A  +F DM  +++ +WN +I G   
Sbjct: 527 GKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQ 586

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG    A + F  MQ   ++PD+ITF  +L+ACA    +  G + L  +     +D +V 
Sbjct: 587 HGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHALITEAALDCDVV 645

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               ++ +  + G + +A  V  ++P + N   W +++    +HG    G+   ++  +M
Sbjct: 646 VGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGR---GKEALELFCQM 701

Query: 495 EPQNRRCD 502
           + +  + D
Sbjct: 702 QQEGVKPD 709



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 221/471 (46%), Gaps = 47/471 (9%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           D ++   L+  +A  +  N   A ++F+ +   +V+ WN +L   ++H        L+ +
Sbjct: 138 DIFMWNMLISMYA--KCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           MV    KP+K+T+  +  AC+  +   +G ++ + ++  G   D+ V ++ I M+   G 
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGG 255

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK--------------- 228
           V+ A ++ ++  + D+I W ++I G  +    + A  LF+  +++               
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 229 ----------------------NTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITW 264
                                 +T  Y   A++S + + G  E+A ++FN +  ++ ++W
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSW 375

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +A+I G+ + G  +EA   FN+M    I+P +     +L AC+   AL QG  IHD + +
Sbjct: 376 TAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK 435

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                D  + TAL+ MYAKCG L  A  VFE +  + V  WNAMI     H + D+A+  
Sbjct: 436 AGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVAT 495

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDL 442
           F  + +E ++PD  TF  +L+ C     ++ G  +Q+L       G + ++     +V +
Sbjct: 496 FQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA---GFESDLHIRNALVSM 552

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
               G L  A  + + MP E +   W  ++    +HGE +F     K++ E
Sbjct: 553 FVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 190/398 (47%), Gaps = 46/398 (11%)

Query: 124 MVGVDS---KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           ++ VDS   + ++ TY ++ + C   +   +G ++H H+  + +  D+ + +  I MYA 
Sbjct: 92  LLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAK 151

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLK----------------------------- 211
            G  N A+QI D+    DV  WN L+ GY++                             
Sbjct: 152 CGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYM 211

Query: 212 ---CGD---IEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
              C D   ++   ELF     +  D +     A+I+   + G  ++A K+FN +  +D 
Sbjct: 212 LNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDL 271

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           ITW+++I G  +   +K+A  +F  M+ + ++P K     +L AC    AL+QG  +H  
Sbjct: 272 ITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHAR 331

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           +K   +  +  +GTAL+ MY KCG ++ A +VF  +K + V +W AMI G A HGR ++A
Sbjct: 332 MKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEA 391

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL-TYMQQMYGIDPEVEHYGCIV 440
              F KM    + P+R+TF  +L AC+    + +G Q     ++  Y  D  V     ++
Sbjct: 392 FLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALL 449

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
            +  + G L +A  V   +  + N   W A++ A  +H
Sbjct: 450 SMYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQH 486



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 188/432 (43%), Gaps = 70/432 (16%)

Query: 254 NEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           NE  D K+    +A ++  +K G   EA+ V   +    I+  +   S +L  C     L
Sbjct: 61  NEFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNL 120

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
             G  IH+H+K + I  D  +   L+ MYAKCG  + A ++F++M  K+V++WN ++GG 
Sbjct: 121 GDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGY 180

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
             H R ++A  L  +M ++ ++PD+ TF  +L+ACA A  +D+G +  + +    G D +
Sbjct: 181 VQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA-GWDTD 239

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMP-------------------------------- 460
           +     ++++  + G + +A +V +++P                                
Sbjct: 240 LFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEE 299

Query: 461 --MEPNAAVWEALLGACRKHGEVEFGER---------------LGKILLEMEPQNRRCDD 503
             ++P+   + +LL AC     +E G+R               +G  LL M  +    +D
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
             ++  L+K R + +   ++MI           G   H +++E +L   K+IE     G 
Sbjct: 360 ALEVFNLVKGRNVVS--WTAMI----------AGFAQHGRMEEAFLFFNKMIE----SGI 403

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSE--KLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
            PN    +  +    + +A K   +     I  G+I TD      ++     C     A 
Sbjct: 404 EPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI-TDDRVRTALLSMYAKCGSLMDAR 462

Query: 622 KLISKVFKRDII 633
            +  ++ K++++
Sbjct: 463 NVFERISKQNVV 474



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 152/378 (40%), Gaps = 60/378 (15%)

Query: 33  TILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T   ILN  K   + +  K   ++I+++G   D ++   LV    N    +   A+ +FN
Sbjct: 510 TFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNC--GDLMSAMNLFN 567

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + ++  WN+++   ++H E       +  M     KP++ T+  +  AC+  EA  E
Sbjct: 568 DMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTE 627

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G ++HA + +  L  DV V +  I MY   G ++ A  +  +  K +V  W ++I GY +
Sbjct: 628 GRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQ 687

Query: 212 CGDIEGAKELF-----------------------------------KSTKDKNTGS---- 232
            G  + A ELF                                   +S KD N       
Sbjct: 688 HGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEH 747

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFN-EMQRD 290
           Y  M+  F R G   EA +  N+M  K D   W A++         + A +V   +++ D
Sbjct: 748 YGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELD 807

Query: 291 KIKPRKFVLSCVLAACASLG---------ALDQGI-------WIHDHVKRNSICVDAVLG 334
                 +V+   + A A +           LD+G+       WI    + +  C D    
Sbjct: 808 PNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTH 867

Query: 335 TALVDMYAKCGRLDMAWK 352
             + +++A+ GRL M  K
Sbjct: 868 PQIEEIHAELGRLHMEMK 885


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/682 (35%), Positives = 391/682 (57%), Gaps = 57/682 (8%)

Query: 28   EFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
            ++   T+L +L     T    L KQ H + +KSG   D  V+ +LV  ++    + F  A
Sbjct: 901  DYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF--A 958

Query: 87   LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-I 145
             +VFN +   ++  WNS++ +C + +     ++L+ +++    KP+ FT  +V +ACS +
Sbjct: 959  REVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL 1018

Query: 146  TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             +      Q+H H +K G   D  V ++ I +Y+  G + +A  +  +    D+ CWNA+
Sbjct: 1019 IDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAM 1078

Query: 206  IDGYLKCGDIEGAKELF---------------------------------------KSTK 226
            + GY+   D + A ELF                                       K+  
Sbjct: 1079 MFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGF 1138

Query: 227  DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            D +    + ++  + + G    A  +FN ++  D++ W+++I G   +G   +AL +++ 
Sbjct: 1139 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 1198

Query: 287  MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
            M++ ++ P ++  + ++ A + + AL+QG  +H +V +     D  +GT+LVDMYAKCG 
Sbjct: 1199 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 1258

Query: 347  LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
            ++ A+++F+ M ++ +  WNAM+ GLA HG A++A+ LF  M+   + PDR++F  +LSA
Sbjct: 1259 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 1318

Query: 407  CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
            C+HAG+     + L  M   YGI+PE+EHY C+VD LGRAG + EA++VI +MP + +A+
Sbjct: 1319 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 1378

Query: 467  VWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMK 512
            +  ALLGACR  G+VE G+R+   L  +EP +               R DDV   RK+MK
Sbjct: 1379 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 1438

Query: 513  ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
             + +K +PG S IDV  ++H F   D SHPQ   IY  ++++++ ++ +GY P++  VL 
Sbjct: 1439 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 1498

Query: 573  DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
            D+++EEKE +  YHSEKLAIA+G I+T    TIRVIKNLRVC DCH+A K ISKVF+R+I
Sbjct: 1499 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 1558

Query: 633  IVRDRVRYHHFRNGKCSCNDFW 654
            ++RD  R+HHFR+G CSC D+W
Sbjct: 1559 VLRDANRFHHFRDGVCSCGDYW 1580



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 206/449 (45%), Gaps = 36/449 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL---R 106
            K  HA I+ SG   DH++S  L+  +  S+  +   A +VF++  + ++  WN++L    
Sbjct: 641  KCTHARIVVSGSAGDHFLSNNLLTMY--SKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 107  ACLEHNE--PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            A ++ N+      + L+  +        + T   V K C  +        VH + +K GL
Sbjct: 699  ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 165  CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF-- 222
              DV V  + + +Y+  G +  AR + D   + DV+ WN ++ GY++ G  + A +LF  
Sbjct: 759  EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 223  --KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-----------NDKDEITWSAIID 269
              +S    +  S   +++G +    ++E + L +++           ++ D   W+  + 
Sbjct: 819  FHRSGLRPDEFSVQLILNGVSEV-NWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLS 877

Query: 270  GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
                 G    A+E F  M    I      L  VLAA A    L+ G  +H    ++ +  
Sbjct: 878  ECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDS 937

Query: 330  DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            D  +  +LV+MY+K G    A +VF DMK  ++ +WN+MI   A     ++++ LF  + 
Sbjct: 938  DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 997

Query: 390  REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLL 443
             E ++PD  T A VL AC  + +ID     L   +Q++      G   +      ++D+ 
Sbjct: 998  HEGLKPDHFTLASVLRAC--SSLID----GLNISRQIHVHALKTGNIADSFVATTLIDVY 1051

Query: 444  GRAGYLAEAEEVISSMPMEPNAAVWEALL 472
             ++G + EAE +  +   + + A W A++
Sbjct: 1052 SKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 71/367 (19%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC-- 212
            HA +V +G  GD  + ++ + MY+  G ++ ARQ+ D   + D++ WNA++  Y     
Sbjct: 643 THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 702

Query: 213 ---GDIEGAKELFKSTKDK-----------------NTG-----------------SYNA 235
              G+ +    LF+  +                   N+G                  ++ 
Sbjct: 703 SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDV 762

Query: 236 MISG-----FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            +SG     +++ GR  +AR LF+ M ++D + W+ ++ GY + G  KEA ++F+E  R 
Sbjct: 763 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 822

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            ++P +F +  +L   + +   D+G W+ D V+                  A   +L ++
Sbjct: 823 GLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQ------------------AYAAKLSLS 863

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
               +D    +VF WN  +      G    AIE F  M    +  D +T   VL+A A  
Sbjct: 864 ----DD--NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGT 917

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             ++ G Q +  +    G+D +V     +V++  + G    A EV + M    +   W +
Sbjct: 918 DDLELGKQ-VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNS 975

Query: 471 LLGACRK 477
           ++ +C +
Sbjct: 976 MISSCAQ 982


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/637 (39%), Positives = 362/637 (56%), Gaps = 55/637 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  +LK G   D YV  TL+ C   S  SN   A +VFN     +   WNS+L   +
Sbjct: 98  KQVHNHVLKLGFDSDVYVRNTLINCF--SVCSNMTDACRVFNESSVLDSVSWNSILAGYI 155

Query: 110 E-----------HNEPWRVI--------------------SLYSEMVGVDSKPNKFTYPT 138
           E           H  P R I                     L+ EM+    + +  T+  
Sbjct: 156 EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML----EKDMVTWSA 211

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI----LDDG 194
           +       E  +E ++    + K G+  D  V  S +   A    VN  + I    L  G
Sbjct: 212 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 271

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
           ++S +   NALI  Y KCGDI  A++LF      +  S+N+MISG+ +    + A+ +F+
Sbjct: 272 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 331

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            M +KD ++WS++I GY ++  + E L +F EMQ    KP +  L  V++ACA L AL+Q
Sbjct: 332 SMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQ 391

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G W+H ++KRN + ++ +LGT L+DMY KCG ++ A +VF  M  K + TWNA+I GLAM
Sbjct: 392 GKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAM 451

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G  + ++++F  M++  + P+ ITF  VL AC H G++D G      M   + I P V+
Sbjct: 452 NGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVK 511

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HYGC+VDLLGRAG L EAEE+++ MPM P+ A W ALLGAC+KHG+ E G R+G+ L+E+
Sbjct: 512 HYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIEL 571

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +P +               + DDV ++R +M +  +   PG SMI+ NGVIHEF  GD +
Sbjct: 572 QPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKT 631

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP +  I  ML ++  KLK+EGY+P+ ++VL D+DEEEKE+    HSEKLAIAFG IN  
Sbjct: 632 HPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINIS 691

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           P   IR++KNLR+C DCH+A KLISK F R I+   R
Sbjct: 692 PPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFR 728



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 232/458 (50%), Gaps = 33/458 (7%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           +L +G  ++ Y +  L+K   +  F + +   ++FN +   N F+WN ++RA ++ N P 
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
              +LY  M+      + +TYP + +ACSI  ++ E  QVH HV+K G   DV+V+++ I
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
             ++    +  A ++ ++ S  D + WN+++ GY++ G++E AK ++    +++  + N+
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNS 180

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           MI  F   G   EA KLF+EM +KD +TWSA+I  + ++  Y+EA+  F  M +  +   
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK--- 352
           + V    L+ACA+L  ++ G  IH    +        L  AL+ MY+KCG + +A K   
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300

Query: 353 ----------------------------VFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                                       +F+ M  K+V +W++MI G A +   D+ + L
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +MQ    +PD  T   V+SACA    +++G     Y+++  G+   V     ++D+  
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR-NGLTINVILGTTLIDMYM 419

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           + G +  A EV   M +E   + W AL+     +G VE
Sbjct: 420 KCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 456


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/439 (48%), Positives = 300/439 (68%), Gaps = 16/439 (3%)

Query: 232 SYNAMISGFARFGRFEEARKLFNEM--NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
           S N +I  +  F   E+AR++F+ M   D++ ++W+A+I  Y +     EA  +F+ M+ 
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 190

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
           + +   KFV + +L+AC  LGAL+QG WIH +++++ I +D+ L T ++DMY KCG L+ 
Sbjct: 191 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 250

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A +VF ++  K + +WN MIGGLAMHG+ + AIELF +M+RE + PD ITF  VLSACAH
Sbjct: 251 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 310

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           +G+++ G     YM ++ G+ P +EH+GC+VDLLGRAG L EA ++I+ MP+ P+A V  
Sbjct: 311 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 370

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERG 515
           AL+GACR HG  E GE++GK ++E+EP N               R +DVAK+RKLM +RG
Sbjct: 371 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 430

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           +K  PG SMI+    + EF  G  +HPQ KEIY  L +I+E ++  GY P++  VL DID
Sbjct: 431 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDID 490

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           EEEKE    YHSEKLAIAFG + T PG T+R+ KNLR+C DCH A+KLISKV+ R+II+R
Sbjct: 491 EEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIR 550

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           DR R+HHFR G CSC D+W
Sbjct: 551 DRNRFHHFRMGGCSCKDYW 569



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 171/405 (42%), Gaps = 83/405 (20%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+   ++   L +      ++   LKQ H+ I++ G   D+   G ++K           
Sbjct: 12  PSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK----------- 60

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
                F ++ K     W  + R C         I +YS M+     PNKFTYP + +AC 
Sbjct: 61  -----FCAISKSGYLRWQ-LARNC---------IFMYSRMLHKSVSPNKFTYPPLIRACC 105

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD--VICW 202
           I  A +EG Q+HAHV+K G   D    ++ I MY  F  + +AR++ D+  + D   + W
Sbjct: 106 IDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSW 165

Query: 203 NALIDGYLKCGDIEGAKELF---------------------------------------K 223
           NA+I  Y++   +  A  LF                                       K
Sbjct: 166 NAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEK 225

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
           S  + ++     +I  + + G  E+A ++FNE+  K   +W+ +I G    G  + A+E+
Sbjct: 226 SGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIEL 285

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT-------- 335
           F EM+R+ + P       VL+ACA  G +++G     ++         VLG         
Sbjct: 286 FKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTE-------VLGLKPGMEHFG 338

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRAD 379
            +VD+  + G L+ A K+  +M +  +     A++G   +HG  +
Sbjct: 339 CMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 383


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 371/658 (56%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA ++K G   D  +   LV  +      + + A +VF+ ++K +V  +N ++    
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKG--GSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +  +   L+  M     KPN+ ++ ++   CS  EA   G  VHA  +  GL  DV 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I+MY   G +  AR++ D     DV+ W  +I GY +  +IE A  LF + +++ 
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 230 TG----SY-----------------------------------NAMISGFARFGRFEEAR 250
                 +Y                                    A++  +A+ G  ++AR
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDAR 419

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ M+ +D ++WSA+I  Y ++G  +EA E F+ M+R+ ++P       +L AC  LG
Sbjct: 420 QVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLG 479

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           ALD G+ I+    +  +     +G AL++M  K G ++ A  +FE+M  ++V TWN MIG
Sbjct: 480 ALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG 539

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G ++HG A +A++LF +M +E+ RP+ +TF  VLSAC+ AG ++ G +  +Y+    GI 
Sbjct: 540 GYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIV 599

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P +E YGC+VDLLGRAG L EAE +I+ MP++PN+++W  LL ACR +G ++  ER  + 
Sbjct: 600 PTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER 659

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            L  EP +                 ++VAK+RK+M+ RG++   G + I+V G +H F  
Sbjct: 660 CLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVV 719

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D SHPQ  EIY  L +++  +K EGY P +  VL ++ E+EKE A  YHSEKLAIA+G 
Sbjct: 720 EDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGV 779

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++   GA IR+ KNLRVC DCHSA+K ISKV  R+II RD  R+HHF+NG CSC D+W
Sbjct: 780 LSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 233/516 (45%), Gaps = 74/516 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ    I++SG   + Y   TL+K H  S   N   A + F+SV    V  WN+++    
Sbjct: 81  KQVRDHIIQSGRQLNIYELNTLIKLH--SICGNMLEARQTFDSVENKTVVTWNAIIAGYA 138

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +        +L+ +MV    +P+  T+  V  ACS     K G + HA V+K G   D  
Sbjct: 139 QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFR 198

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           + ++ + MY   G ++ ARQ+ D   K DV  +N +I GY K GD E A +LF   + + 
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 229 --------------------------------NTGSYN------AMISGFARFGRFEEAR 250
                                           NTG  +      A+I  +   G  E AR
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F++M  +D ++W+ +I GY ++   ++A  +F  MQ + I+P +     ++ ACAS  
Sbjct: 319 RVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSA 378

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L     IH  V R     D ++ TALV MYAKCG +  A +VF+ M  ++V +W+AMIG
Sbjct: 379 DLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIG 438

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ------------ 418
               +G  ++A E F  M+R  + PD +T+  +L+AC H G +D G++            
Sbjct: 439 AYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS 498

Query: 419 ------ALTYMQQMYG------------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
                 AL  M   +G            +  +V  +  ++      G   EA ++   M 
Sbjct: 499 HIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRML 558

Query: 461 ME---PNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            E   PN+  +  +L AC + G VE G R    LL+
Sbjct: 559 KERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLD 594



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 191/395 (48%), Gaps = 51/395 (12%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +DS+    TY  +F+ C +      G QV  H++++G   +++  ++ I++++  G + +
Sbjct: 59  IDSR----TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLE 114

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY------------- 233
           ARQ  D      V+ WNA+I GY + G ++ A  LF+   D+                  
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSS 174

Query: 234 --------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                                      A++S + + G  + AR++F+ +  +D  T++ +
Sbjct: 175 PAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVM 234

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I GY K G  ++A ++F  MQ++  KP +     +L  C++  AL  G  +H       +
Sbjct: 235 IGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL 294

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             D  + TAL+ MY  CG ++ A +VF+ MK+++V +W  MI G A +   +DA  LF  
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFAT 354

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM---YGIDPEVEHYGCIVDLLG 444
           MQ E ++PDRIT+  +++ACA +   D  L    + Q +   +G D  V+    +V +  
Sbjct: 355 MQEEGIQPDRITYIHIINACASSA--DLSLAREIHSQVVRAGFGTDLLVDT--ALVHMYA 410

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + G + +A +V  +M    +   W A++GA  ++G
Sbjct: 411 KCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENG 444


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 365/624 (58%), Gaps = 21/624 (3%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+  HA IL+ G      V+  LV C  +S   + + +L +F +  + N FV N+++R  
Sbjct: 45  LRHVHAQILRRGVLSSR-VAAQLVSC--SSLLKSPDYSLSIFRNSEERNPFVLNALIRGL 101

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            E+      +  +  M+ +  KP++ T+P V K+ S       G  +HA  +KN +  D 
Sbjct: 102 TENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDS 161

Query: 169 HVKSSGIQMYACFGCVNKARQILDDG----SKSDVICWNALIDGYLKCGDIEGAKELFKS 224
            V+ S + MYA  G +  A Q+ ++      K  ++ WN LI+GY +  D+  A  LF+S
Sbjct: 162 FVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRS 221

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             ++N+GS++ +I G+   G    A++LF  M +K+ ++W+ +I+G+++ G Y+ A+  +
Sbjct: 222 MPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            EM    +KP ++ ++ VL+AC+  GAL  GI IH ++  N I +D  +GTALVDMYAKC
Sbjct: 282 FEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKC 341

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G LD A  VF +M  K++ +W AMI G A+HGR   AI+ F +M     +PD + F  VL
Sbjct: 342 GELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC ++  +D GL     M+  Y I+P ++HY  +VDLLGRAG L EA E++ +MP+ P+
Sbjct: 402 TACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPD 461

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKL 510
              W AL  AC+ H      E + + LLE++P+                   DV K R  
Sbjct: 462 LTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLS 521

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           +++R  + + G S I+++G +++F  GD SH   +EI L L +II     +GY+P +   
Sbjct: 522 LQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWS 581

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           + DI+EEEKE     HSEKLA+  GF+ T PG TIR+IKNLR+C DCHS  K +SK+ +R
Sbjct: 582 IHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQR 641

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           DI++RD  ++HHF++G+CSC D+W
Sbjct: 642 DILLRDARQFHHFKDGRCSCGDYW 665


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/654 (38%), Positives = 361/654 (55%), Gaps = 84/654 (12%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           N P +  +++TIL +LN+ C+T    L Q HA ILK+G   +  +        +N    +
Sbjct: 9   NTPKTRLTEQTILTLLNSHCNT-LSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIH 67

Query: 83  FELALKVFNSVHKP-------NVFVWNSVLRACLE-HNEPWRVISLYSEMVGVDSKPNKF 134
           +  +  +F   H         + F++N+++RA  +  +        Y  M+     PNKF
Sbjct: 68  YATSF-LFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKF 126

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T+P V K C+   + + G  VH  VVK G                               
Sbjct: 127 TFPFVLKGCAGIGSLRLGKCVHGCVVKFGF------------------------------ 156

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
            + DV   N LI  Y   G+ +G                            FE A K+F+
Sbjct: 157 -EEDVHVLNTLIHMYCCLGE-DG----------------------------FEFAEKVFD 186

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           +    D +TWSA+I G+ + G    A+++F EMQ   + P +  +  VL+ACA LGAL+ 
Sbjct: 187 DSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALEL 246

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G W+  +V++ +I     L  AL+DM+AKCG +D A K+F  M  + + +W ++I GLAM
Sbjct: 247 GKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAM 306

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HGR  DA+ LF +M    + PD + F  VLSAC+H+G++D+G      M++ + I P+VE
Sbjct: 307 HGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVE 366

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HYGC+VDLL R G++ EA E +  MP EPN  +W  ++ AC   GE++ GE + K L++ 
Sbjct: 367 HYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKS 426

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP +              R+ +   K+R++M  RG+K  PGS+MI+VN  ++EF  GD S
Sbjct: 427 EPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKS 486

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           H Q KEIY M+ ++  ++K  GY P +SQVL DIDEE+KE A   HSEKLAIAF  +NT 
Sbjct: 487 HDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTP 546

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           PG +IR++KNLRVCEDCHSATK ISKV+ R+I+VRDR R+HHF+NG CSC DFW
Sbjct: 547 PGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/629 (37%), Positives = 356/629 (56%), Gaps = 48/629 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWN 102
           +S    K+ HA I      Q  YV   L++   A            +F+ +H PN F W 
Sbjct: 19  SSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWT 78

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +++RA        + +S YS M      P  FT+  +F AC+       G Q+HA     
Sbjct: 79  ALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHA----- 133

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
                                    + +L  G  SD+   NA+ID Y+KCG +  A+ +F
Sbjct: 134 -------------------------QTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVF 168

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               +++  S+  +I  + R G    AR LF+ +  KD +TW+A++ GY ++    +ALE
Sbjct: 169 DEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALE 228

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV--DAVLGTALVDM 340
           VF  ++ + ++  +  L  V++ACA LGA     WI D  + +   V  + ++G+AL+DM
Sbjct: 229 VFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDM 288

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y+KCG ++ A+ VF+ M+ + VF++++MI G A+HGRA  AI+LF+ M    ++P+ +TF
Sbjct: 289 YSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTF 348

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL+AC+HAG++D+G Q    M++ YG+ P  E Y C+ DLL RAGYL +A +++ +MP
Sbjct: 349 VGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMP 408

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAK 506
           ME + AVW ALLGA   HG  +  E   K L E+EP N               R DDV+K
Sbjct: 409 MESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSK 468

Query: 507 MRKLMKERGIKTNPGSSMIDV-NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           +RKL++E+ +K NPG S ++  NG+IH+F  GD SHP++ EI   L  ++E+LK  GY P
Sbjct: 469 VRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQP 528

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N S + + I++ EK      HSEKLA+AFG ++TD G+TI+++KNLR+CEDCH      S
Sbjct: 529 NLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGAS 588

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KV  R I+VRD  R+HHF NG CSC++FW
Sbjct: 589 KVTGRKIVVRDNTRFHHFLNGACSCSNFW 617


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 358/620 (57%), Gaps = 47/620 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+++ ++Q HA +   G  +D ++ G  VK  A S  +  + A ++ +   KP +F  NS
Sbjct: 25  TTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNS 84

Query: 104 VLRACLEHNEPWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           ++RA  +   P +    YS ++  G   KP+ +T   + +AC+     + G+QVH   ++
Sbjct: 85  MIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIR 144

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   D HV++  I +YA  GC++   ++ +  S  D +C                    
Sbjct: 145 RGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVC-------------------- 184

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                        AM++  AR G    ARKLF  M +KD I W+A+I GY + G  +EAL
Sbjct: 185 -----------RTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREAL 233

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F+ MQ + +K     +  VL+AC  LGALDQG W H +++RN I +   LGT LVD+Y
Sbjct: 234 NLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLY 293

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +D A +VF  M+ K V+TW++ + GLAM+G  +  ++LF  M+++ + P+ +TF 
Sbjct: 294 AKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFV 353

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL  C+  G +D G +    M+  +GI+P+++HYGC+VDL  RAG L +A  +I  MPM
Sbjct: 354 SVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPM 413

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKM 507
           + +AAVW +LL A R +  +E G    K +LE+E  N                 D+V+ +
Sbjct: 414 KAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHV 473

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ MK +G++  PG S+++VNG +HEF  GD SHP+  EI  + K I  +L++ GY  ++
Sbjct: 474 RQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADT 533

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           + V+FDIDEEEKE A   HSEK AIAFG ++      IR++KNLRVC DCH  + +ISK+
Sbjct: 534 TPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKI 593

Query: 628 FKRDIIVRDRVRYHHFRNGK 647
           F R+IIVRDR R+HHF++G+
Sbjct: 594 FNREIIVRDRNRFHHFKDGR 613



 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 266/476 (55%), Gaps = 30/476 (6%)

Query: 194  GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
            G+K + +C + L+   +K G +E  K +            NA+++ + + G    + KLF
Sbjct: 651  GNKEEGVCIHGLV---MKSGVLEEVKVV------------NALMNLYGKTGDLISSCKLF 695

Query: 254  NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             +++ K+ ++W+ +I  + ++G  +E L  FN  +   +KP +     VL  C  +G + 
Sbjct: 696  EDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVR 755

Query: 314  QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
                IH  +       +  + TAL+D+YAK GRL+ +  VF ++   +   W AM+   A
Sbjct: 756  LSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYA 815

Query: 374  MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
             HG   DAI+ F  M    + PD +TF  +L+AC+H+G+++ G      M + Y I+P +
Sbjct: 816  THGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRL 875

Query: 434  EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            +HY C+VDL+GR+G L +A  +I  MPMEP++ VW ALLGACR + + + G +  K L E
Sbjct: 876  DHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFE 935

Query: 494  MEPQNRR--------------CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
            +EP++ R                D +++R LMK++G+    G S I+    IH+F  GD 
Sbjct: 936  LEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDW 995

Query: 540  SHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHP+ ++I   LK+I +K+K E G+   +  VL D+DE+ KE     HSEK+A+AFG + 
Sbjct: 996  SHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLV 1055

Query: 599  TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              P   I + KNLR+C DCH   K IS + KR II+RD  R+HHF  G CSC D+W
Sbjct: 1056 ISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 251 KLFN-EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI--KPRKFVLSCVLAACA 307
           K+FN E+  +D   +    DG    GY  +  EV + M R ++  +P +     +++AC 
Sbjct: 592 KIFNREIIVRDRNRFHHFKDG---RGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACV 648

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
             G  ++G+ IH  V ++ +  +  +  AL+++Y K G L  + K+FED+ +K + +WN 
Sbjct: 649 HGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNT 708

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI     +G A++ +  F   +   ++PD+ TF  VL  C   G++ R  Q +  +    
Sbjct: 709 MIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV-RLSQGIHGLIMFC 767

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G +        ++DL  + G L ++  V   +   P++  W A+L A   HG
Sbjct: 768 GFNANTCITTALLDLYAKLGRLEDSSTVFLEIT-SPDSMAWTAMLAAYATHG 818



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 129/286 (45%), Gaps = 41/286 (14%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           V  +PN+ T+ ++  AC      +EGV +H  V+K+G+  +V V ++ + +Y   G +  
Sbjct: 631 VGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLIS 690

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-------------------- 226
           + ++ +D S  +++ WN +I  +L+ G  E     F  ++                    
Sbjct: 691 SCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCED 750

Query: 227 -------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                              + NT    A++  +A+ GR E++  +F E+   D + W+A+
Sbjct: 751 IGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAM 810

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KRNS 326
           +  Y   GY ++A++ F  M    + P     + +L AC+  G +++G +  + + KR  
Sbjct: 811 LAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYR 870

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGG 371
           I       + +VD+  + G L  A+ + ++M M+     W A++G 
Sbjct: 871 IEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGA 916



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/263 (18%), Positives = 112/263 (42%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H +++KSG  ++  V   L+  +  +   +   + K+F  +   N+  WN+++   L++ 
Sbjct: 660 HGLVMKSGVLEEVKVVNALMNLYGKT--GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNG 717

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++ ++    V  KP++ T+  V + C      +    +H  ++  G   +  + +
Sbjct: 718 LAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITT 777

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG- 231
           + + +YA  G +  +  +  + +  D + W A++  Y   G    A + F+         
Sbjct: 778 ALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSP 837

Query: 232 ---SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
              ++  +++  +  G  EE R  F  M+ +  I      +S ++D   + G  ++A  +
Sbjct: 838 DHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGL 897

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
             EM    ++P   V   +L AC
Sbjct: 898 IKEM---PMEPSSGVWGALLGAC 917


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/690 (36%), Positives = 372/690 (53%), Gaps = 57/690 (8%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+ +T I  +EFS  T+L+        ++    + H  ++K G+  D + +  L+  +A 
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYG--MKVHGYLIKLGYDSDPFSANALLDMYAK 235

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S     E A+ VF  + KP++  WN+V+  C+ H +    + L  +M      P+ FT  
Sbjct: 236 SGCP--EAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLS 293

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +  KAC+     K G Q+H+ ++K  +  D  V    I MY+  G +  AR + D     
Sbjct: 294 SALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK 353

Query: 198 DVICWNALIDGYLKCG-DIEGAK------------------ELFKSTKDKNTGSY----- 233
           DVI WN++I GY  CG DIE                      + KST       +     
Sbjct: 354 DVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVH 413

Query: 234 ---------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                          N+++  + +    E+A K+F     +D + ++++I  Y++ G  +
Sbjct: 414 TISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGE 473

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL+++  MQ   IKP  F+ S +  ACA+L A +QG  IH HV +  +  D   G +LV
Sbjct: 474 EALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLV 533

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MYAKCG +D A  +F ++  + + +W+AMIGGLA HG    A++LF++M +  + P+ I
Sbjct: 534 NMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHI 593

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VLSAC HAG++    +    M++++GI P  EHY C+VD+LGR G L EA  ++  
Sbjct: 594 TLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKE 653

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDV 504
           MP + +AAVW ALLGA R H  +E G    ++LL +EP+                  D+V
Sbjct: 654 MPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNV 713

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           AK+R+ MK   +K  PG S I++   ++ F  GD SHP+ KEIY+ L  + E+L   GY 
Sbjct: 714 AKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYV 773

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P     L D+++ EKE    +HSEKLA+AFG I T PGA IRV KNLRVC DCH+A K I
Sbjct: 774 PMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFI 833

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SKV  R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 834 SKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 204/431 (47%), Gaps = 49/431 (11%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           F +A K+     +P++  W++++   +++      +  Y EM  + +K N+FT+ +V K 
Sbjct: 98  FRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKG 157

Query: 143 CSITEADKEGVQVH-----AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           CS+T   + G Q+H       ++  G+  +    S+ +   AC G        L+D +  
Sbjct: 158 CSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLN--ACAG--------LEDEN-- 205

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
               +   + GYL            K   D +  S NA++  +A+ G  E A  +F E+ 
Sbjct: 206 ----YGMKVHGYL-----------IKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP 250

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
             D ++W+A+I G         AL++  +M   ++ P  F LS  L ACA++G +  G  
Sbjct: 251 KPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ 310

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  + +  +  D+ +G  L+DMY+KCG L  A  VF+ M  K+V  WN++I G +  G 
Sbjct: 311 LHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGY 370

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY- 436
             +A+ LF  M +E +  ++ T + +L + A       G QA  + +Q++ I  +  +  
Sbjct: 371 DIEAMSLFTNMYKEGLEFNQTTLSTILKSTA-------GSQANGFCEQVHTISIKSGYQY 423

Query: 437 -----GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
                  ++D  G+   L +A +V    P E +   + +++ A  ++G    GE   K+ 
Sbjct: 424 DGYVANSLLDSYGKCCLLEDAAKVFEVCPAE-DLVAYTSMITAYSQYG---LGEEALKMY 479

Query: 492 LEMEPQNRRCD 502
           L M+ ++ + D
Sbjct: 480 LRMQDRDIKPD 490


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 381/660 (57%), Gaps = 61/660 (9%)

Query: 15  KPEEISATNIPTS--EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           KP   S +N P S     QK I+ +L    H +   +   HA ++++GH QD ++   L+
Sbjct: 32  KPHPNSNSN-PKSLKSLDQKQIISLLQRSKHIN--QVLPIHAQLIRNGHSQDPFMVFELL 88

Query: 73  ----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
               KCHA       + A ++F   H PNV+++ +++   +     +  I LYS M+   
Sbjct: 89  RSCSKCHA------IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS 142

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+ +   ++ KAC    A +EG +VH+  +K GL  +  V+   +++Y          
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYG--------- 193

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                                 KCG++  A+ +F+   +    S   MIS ++  G  EE
Sbjct: 194 ----------------------KCGELGDARRVFEEMPEDVVAS-TVMISSYSDQGLVEE 230

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F+ +  KD + W+A+IDG+ ++     ALE F  MQ + ++P +F + CVL+AC+ 
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL+ G W+H ++++  I ++  +G AL++MY++CG +D A  VF++MK ++V T+N M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GL+M+G++  AIELF  M   ++RP  +TF  VL+AC+H G++D G +    M + YG
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 410

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           ++P++EHYGC+VDLLGR G L EA ++I +M M P+  +   LL AC+ H  +E GE++ 
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 489 KILLE--------------MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K+L +              +   + +  + A++R  MKE G++  PG S I+VN  IHEF
Sbjct: 471 KVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HP+ + IY  L+++   L++EGY P    VL DI++ EKE A   HSE+LAI +
Sbjct: 531 LLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICY 590

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T+P   IRV+KNLRVC DCHSA KLI+K+ +R ++VRDR R+H+F NG CSC D+W
Sbjct: 591 GLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 378/662 (57%), Gaps = 59/662 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            +Q HA+++KS       VS +L+  +  S+      A K F +  + ++  WN+++ +  
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMY--SKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE---GVQVHAHVVKNGLCG 166
            ++N     I  + +++    KP++FT  +V +ACS  +  +    G QVH + +K G+  
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 167  DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--- 223
            D  V ++ I +Y+  G +++A  +L      D+  WNA++ GY+K      A E F    
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 224  -----------STKDKNTG------------------SYN-------AMISGFARFGRFE 247
                       +T  K +G                   +N        ++  + + G   
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 248  EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
             A +LF E++  DE+ W+ +I GY ++G    AL V++ M+   ++P ++  + ++ A +
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 308  SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
             L AL+QG  IH +V +    +D  +GT+LVDMY KCG +  A++VF  M +++V  WNA
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNA 1271

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            M+ GLA HG  D+A+ LF  MQ   ++PD++TF  VLSAC+H+G+     +    M + Y
Sbjct: 1272 MLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTY 1331

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            GI PE+EHY C+VD LGRAG + EAE VI+SMP + +A+++ ALLGACR  G+ E  +R+
Sbjct: 1332 GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRV 1391

Query: 488  GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
               LL ++P +              R+ DDV   R +MK + +K +PG S IDV   +H 
Sbjct: 1392 ADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHL 1451

Query: 534  FRTGDGSHPQVKEIYLMLKKIIEKLKMEG-YSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F   D SHPQ   IY  ++ ++++++ EG Y P++   L D++EEEKE A  YHSEKLAI
Sbjct: 1452 FVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAI 1511

Query: 593  AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
            AFG I+T P ATIRVIKNLRVC DCHSA K ISK+ +R+I++RD  R+HHFRNG CSC D
Sbjct: 1512 AFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571

Query: 653  FW 654
            +W
Sbjct: 1572 YW 1573



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 190/453 (41%), Gaps = 42/453 (9%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+AHA I+ SG   D Y++  L+  +  S+  +   A +VF+     ++  WNS+L A  
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY--SKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 110  EHN--------EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
            +          E +R+  L  E     ++        +       +  +    VH + VK
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE---TVHGYAVK 745

Query: 162  NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
             G   D+ V  + + +Y  +G V +AR + D   + D + WN ++  Y++    + A   
Sbjct: 746  IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 222  FKSTKDKN-----------TGSYNAMISGFARFGRFEE-----ARKLFNEMNDKDEITWS 265
            F +                 G  N+ +S   +  R  E     A K+F      +   W+
Sbjct: 806  FSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRK--RHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 266  AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
              +  +   G    A++ F  + R  I      L  +L+A      LD G  IH  V ++
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 326  SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            S      +  +L++MY+K G +  A K F +    ++ +WN MI   A +    +AI  F
Sbjct: 924  SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTF 983

Query: 386  FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCI 439
              + R+ ++PD+ T A VL AC+     D G +  T   Q++      GI  +      +
Sbjct: 984  RDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 440  VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            +DL  + G + EAE ++     + + A W A++
Sbjct: 1040 IDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 28/359 (7%)

Query: 24   IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
            IP  E +  T   I  + C  + +  KQ  A  +K G   D +VS  ++  +   +  + 
Sbjct: 1095 IPIDEITLATA--IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI--KCGDM 1150

Query: 84   ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
              AL++F  + +P+   W +++   +E+ +    +S+Y  M     +P+++T+ T+ KA 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 144  SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
            S   A ++G Q+HA+VVK     D  V +S + MY   G V  A ++        V+ WN
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 204  ALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDK 259
            A++ G  + G ++ A  LF++ +         ++  ++S  +  G F EA K F+ M   
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 260  DEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
              IT     +S ++D   + G  +EA  V   M     K    +   +L AC + G  + 
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASM---PFKASASMYRALLGACRTKGDAET 1387

Query: 315  GIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKVFEDMKMKEV-----FTW 365
               + D +    + +D    +A V   ++YA   + D        MK+K V     F+W
Sbjct: 1388 AKRVADKL----LALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSW 1442



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 72/376 (19%)

Query: 144 SITEAD-KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           +I  AD K G + HA +V +G   D ++ ++ I MY+  G +  ARQ+ D  S  D++ W
Sbjct: 621 AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 203 NALIDGYLKCGD------IEGAKEL-------FKSTK------------------DKNTG 231
           N+++  Y +  D      +EG +         F  T+                   +   
Sbjct: 681 NSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740

Query: 232 SY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            Y              A+++ + ++G   +AR LF++M ++D + W+ ++  Y ++ +  
Sbjct: 741 GYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQD 800

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL  F+   R    P    L CV+    S         + ++ KR++  V A       
Sbjct: 801 EALRFFSAFHRSGFXPDFSNLHCVIGGVNSD--------VSNNRKRHAEQVKA------- 845

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
                      A K+F   +   +F WN  +      G+   AI+ F  + R  +  D +
Sbjct: 846 ----------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSV 895

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   +LSA   A  +D G Q    + +     P V     ++++  +AG +  AE+   +
Sbjct: 896 TLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 459 MPMEPNAAVWEALLGA 474
            P E +   W  ++ +
Sbjct: 955 SP-ELDLISWNTMISS 969


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/628 (38%), Positives = 352/628 (56%), Gaps = 90/628 (14%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           ++ +  KQ HA I+K+ HF            HA       ++ L  F S   P+   WN 
Sbjct: 89  STLEQTKQIHAHIIKT-HFH-----------HA------LQIPLNDFPSGLSPSA-QWNF 129

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           V+ +  + N+P   +++Y+++  +D + + F  P+V KAC      + G ++H  V+K G
Sbjct: 130 VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG 189

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW----NALIDGYLKCGDIEGAK 219
           L  DV V ++ + MY    CV  AR + D   + DV+ W     AL+D Y KC       
Sbjct: 190 LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKC------- 242

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                   G    AR+LFN +  K  ++W+A+I G  +    +E
Sbjct: 243 ------------------------GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEE 278

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
             ++F  MQ + I P +  +                      + +  + VD +L TALVD
Sbjct: 279 GTKLFIRMQEENIFPNEITM----------------------LNKERVEVDCILNTALVD 316

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG ++ A ++F +   +++  WNA+I G AMHG  ++A+++F +M+R+ ++P+ IT
Sbjct: 317 MYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDIT 376

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L AC+HAG++  G +    M   +G+ P++EHYGC+VDLLGRAG L EA E+I SM
Sbjct: 377 FIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM 436

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P++PN  VW AL+ ACR H   + GE     LLE+EP+N               R  D A
Sbjct: 437 PIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAA 496

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
            +RK MK  G+K  PG S+I+VNG +HEF  GD SHPQ++ I  ML ++  KL   GY P
Sbjct: 497 GVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVP 556

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++S VL +IDEEEKETA  YHSEKLA+AFG I+T P   IR++KNLRVC DCH+ATKL+S
Sbjct: 557 DTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLS 616

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           K++ R IIVRDR R+HHFR G CSC D+
Sbjct: 617 KIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/629 (37%), Positives = 368/629 (58%), Gaps = 30/629 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA+++ +G  Q  ++S  LV  +AN    +  L+   F+ + + +V+ WNS++ A +
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +      I  + +++ V   +P+ +T+P V KAC       +G ++H    K G   +V
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNV 150

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V +S I MY+ FG    AR + DD    D+  WNA+I G ++ G+   A ++    + +
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 229 N--------TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                           +  +A+ G  + A K+F  +  KD I+W+ +I GY ++G   EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 281 LEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           +EV+  M+  K I P +     +L A A +GAL QG+ IH  V + ++ +D  + T L+D
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           +Y KCGRL  A  +F  +  +   TWNA+I    +HG A+  ++LF +M  E ++PD +T
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +LSAC+H+G ++ G      MQ+ YGI P ++HYGC+VDLLGRAGYL  A + I  M
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 449

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P++P+A++W ALLGACR HG +E G+     L E++ +N               + + V 
Sbjct: 450 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 509

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           K+R L +ERG+K  PG S I+VN  +  F TG+ SHP+ KEIY  L+ +  K+K  GY P
Sbjct: 510 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 569

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           + S VL D++E+EKE     HSE+LAIAFG I+T P + IR+ KNLRVC DCH+ATK IS
Sbjct: 570 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 629

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ +R+I+VRD  R+HHF++G CSC D+W
Sbjct: 630 RITQREIVVRDSNRFHHFKDGICSCGDYW 658


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 378/662 (57%), Gaps = 59/662 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            +Q HA+++KS       VS +L+  +  S+      A K F +  + ++  WN+++ +  
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMY--SKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE---GVQVHAHVVKNGLCG 166
            ++N     I  + +++    KP++FT  +V +ACS  +  +    G QVH + +K G+  
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 167  DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--- 223
            D  V ++ I +Y+  G +++A  +L      D+  WNA++ GY+K      A E F    
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 224  -----------STKDKNTG------------------SYN-------AMISGFARFGRFE 247
                       +T  K +G                   +N        ++  + + G   
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 248  EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
             A +LF E++  DE+ W+ +I GY ++G    AL V++ M+   ++P ++  + ++ A +
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 308  SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
             L AL+QG  IH +V +    +D  +GT+LVDMY KCG +  A++VF  M +++V  WNA
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNA 1271

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            M+ GLA HG  D+A+ LF  MQ   ++PD++TF  VLSAC+H+G+     +    M + Y
Sbjct: 1272 MLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTY 1331

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            GI PE+EHY C+VD LGRAG + EAE VI+SMP + +A+++ ALLGACR  G+ E  +R+
Sbjct: 1332 GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRV 1391

Query: 488  GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
               LL ++P +              R+ DDV   R +MK + +K +PG S IDV   +H 
Sbjct: 1392 ADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHL 1451

Query: 534  FRTGDGSHPQVKEIYLMLKKIIEKLKMEG-YSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F   D SHPQ   IY  ++ ++++++ EG Y P++   L D++EEEKE A  YHSEKLAI
Sbjct: 1452 FVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAI 1511

Query: 593  AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
            AFG I+T P ATIRVIKNLRVC DCHSA K ISK+ +R+I++RD  R+HHFRNG CSC D
Sbjct: 1512 AFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571

Query: 653  FW 654
            +W
Sbjct: 1572 YW 1573



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 190/453 (41%), Gaps = 42/453 (9%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+AHA I+ SG   D Y++  L+  +  S+  +   A +VF+     ++  WNS+L A  
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY--SKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 110  EHN--------EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
            +          E +R+  L  E     ++        +       +  +    VH + VK
Sbjct: 689  QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE---TVHGYAVK 745

Query: 162  NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
             G   D+ V  + + +Y  +G V +AR + D   + D + WN ++  Y++    + A   
Sbjct: 746  IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 222  FKSTKDKN-----------TGSYNAMISGFARFGRFEE-----ARKLFNEMNDKDEITWS 265
            F +                 G  N+ +S   +  R  E     A K+F      +   W+
Sbjct: 806  FSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRK--RHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 266  AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
              +  +   G    A++ F  + R  I      L  +L+A      LD G  IH  V ++
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 326  SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            S      +  +L++MY+K G +  A K F +    ++ +WN MI   A +    +AI  F
Sbjct: 924  SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTF 983

Query: 386  FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCI 439
              + R+ ++PD+ T A VL AC+     D G +  T   Q++      GI  +      +
Sbjct: 984  RDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 440  VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            +DL  + G + EAE ++     + + A W A++
Sbjct: 1040 IDLYSKGGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 28/359 (7%)

Query: 24   IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
            IP  E +  T   I  + C  + +  KQ  A  +K G   D +VS  ++  +   +  + 
Sbjct: 1095 IPIDEITLATA--IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI--KCGDM 1150

Query: 84   ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
              AL++F  + +P+   W +++   +E+ +    +S+Y  M     +P+++T+ T+ KA 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 144  SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
            S   A ++G Q+HA+VVK     D  V +S + MY   G V  A ++        V+ WN
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 204  ALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDK 259
            A++ G  + G ++ A  LF++ +         ++  ++S  +  G F EA K F+ M   
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 260  DEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
              IT     +S ++D   + G  +EA  V   M     K    +   +L AC + G  + 
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASM---PFKASASMYRALLGACRTKGDAET 1387

Query: 315  GIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKVFEDMKMKEV-----FTW 365
               + D +    + +D    +A V   ++YA   + D        MK+K V     F+W
Sbjct: 1388 AKRVADKL----LALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSW 1442



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 72/376 (19%)

Query: 144 SITEAD-KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           +I  AD K G + HA +V +G   D ++ ++ I MY+  G +  ARQ+ D  S  D++ W
Sbjct: 621 AIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTW 680

Query: 203 NALIDGYLKCGD------IEGAKEL-------FKSTK------------------DKNTG 231
           N+++  Y +  D      +EG +         F  T+                   +   
Sbjct: 681 NSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740

Query: 232 SY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            Y              A+++ + ++G   +AR LF++M ++D + W+ ++  Y ++ +  
Sbjct: 741 GYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQD 800

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL  F+   R    P    L CV+    S         + ++ KR++  V A       
Sbjct: 801 EALRFFSAFHRSGFFPDFSNLHCVIGGVNSD--------VSNNRKRHAEQVKA------- 845

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
                      A K+F   +   +F WN  +      G+   AI+ F  + R  +  D +
Sbjct: 846 ----------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSV 895

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   +LSA   A  +D G Q    + +     P V     ++++  +AG +  AE+   +
Sbjct: 896 TLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 459 MPMEPNAAVWEALLGA 474
            P E +   W  ++ +
Sbjct: 955 SP-ELDLISWNTMISS 969


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 338/546 (61%), Gaps = 23/546 (4%)

Query: 132 NKFTYPTVFKACSITEADKEGVQ--------VHAHVVKNGLCG-DVHVKSSGIQMYACFG 182
           N F+     +A +   A    ++        +HA  +K+G    D+ V+++ ++ YA  G
Sbjct: 30  NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAG 89

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
             + AR   D+  + DV   N ++  Y+  G++  A+ +F   ++++  S+N MI G+A 
Sbjct: 90  RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAV 149

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  + AR++FN M+D+D  +WS+++  YTK    K+ALE++ EM+   + P    +  V
Sbjct: 150 NGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSV 209

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+AC+ +GAL  G  +H  V+ N + +D  LGTAL+DMYAKCG ++ + +VF  M +K+V
Sbjct: 210 LSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDV 269

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            TW++MI GLA HG   DA+ LF +M  E ++P+ +TF  VL +C H G++  G +  + 
Sbjct: 270 LTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSS 329

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M  ++G+ P+V+HYGC+VDLLGR+G++ EA+++I  MP EP+A +W ALLGACR +  VE
Sbjct: 330 MSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVE 389

Query: 483 FGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             E     L  ++P              Q    + VA+MR+ ++   I+  PG S I+  
Sbjct: 390 VAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQ 449

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
             IHEF +GD SHP+ KEIY ML +++++L+  GY P +  VL DIDE+ KE A   HSE
Sbjct: 450 NTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSE 509

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLA+AFG + T  G+T+R+ KNLR CEDCHSA KLI+ +++R +I+RDR R+HHF  G+C
Sbjct: 510 KLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRC 569

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 570 SCKDYW 575



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           +LA +VFN +   + F W+S++ A  +       + L+ EM      P+  T  +V  AC
Sbjct: 154 DLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSAC 213

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           S   A   G +VH  V  NG+  DV + ++ I MYA  G +  + ++       DV+ W+
Sbjct: 214 SDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWS 273

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           ++I G    G    A  LF     +    N  ++  ++      G   + +K F+ M+  
Sbjct: 274 SMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVV 333

Query: 260 DEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             +T     +  ++D   + G+ +EA ++  +M     +P   +   +L AC
Sbjct: 334 HGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM---PFEPDAVIWRALLGAC 382



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 16/178 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H  +  +G   D  +   L+  +A  +  + E +++VF+S+   +V  W+S++     
Sbjct: 224 EVHQFVESNGVELDVKLGTALIDMYA--KCGDIENSVRVFHSMPVKDVLTWSSMIIGLAN 281

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           H      +SL+S M+    +PN+ T+  V  +C+      +G +  + +        VH 
Sbjct: 282 HGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSM------SVVHG 335

Query: 171 KSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKE 220
            +  +Q Y C        G + +A+Q++ D   + D + W AL+       ++E A+E
Sbjct: 336 VTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEE 393


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/627 (37%), Positives = 350/627 (55%), Gaps = 76/627 (12%)

Query: 42  CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVW 101
           C +S   LKQ HA  ++ G   ++   G  +     S  +    A  VF  +H PNVF W
Sbjct: 27  CASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTW 86

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           N+++R   E + P      Y +MV    +P+  TYP + KA S +   +EG  +H+  ++
Sbjct: 87  NTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIR 146

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           NG                                +S V   N+L+  Y  CGD E A   
Sbjct: 147 NGF-------------------------------ESLVFVQNSLLHIYAACGDTESAY-- 173

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                        K+F  M ++D + W+++I+G+  +G   EAL
Sbjct: 174 -----------------------------KVFELMKERDLVAWNSMINGFALNGRPNEAL 204

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F EM  + ++P  F +  +L+A A LGAL+ G  +H ++ +  +  ++ +  +L+D+Y
Sbjct: 205 TLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLY 264

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +  A +VF +M  +   +W ++I GLA++G  ++A+ELF +M+ + + P  ITF 
Sbjct: 265 AKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFV 324

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL AC+H GM+D G +    M++  GI P +EHYGC+VDLL RAG + +A E I +MP+
Sbjct: 325 GVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPV 384

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +PNA +W  LLGAC  HG +  GE     LL +EP++              RR  DV  +
Sbjct: 385 QPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVI 444

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ M + G+K  PG S++++   ++EF  GD SHPQ +++Y +L+KI E LK+EGY P++
Sbjct: 445 RRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHT 504

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           + VL DI+EEEKE A  YHSEK+AIAF  +NT PG  IRV+KNLRVC DCH A KLI+K+
Sbjct: 505 ANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKI 564

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + R+I++RDR R+HHFR G CSC D+W
Sbjct: 565 YDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/502 (43%), Positives = 313/502 (62%), Gaps = 14/502 (2%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV   ++ +  Y   G +++AR++ D   + + + WNA+I GY++C  ++ A+ELF++  
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            +N  S+N MI+G+A+ G   +AR  F+ M  +D I+W+AII GY + GY +EAL +F E
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+RD  +  +   +  L+ CA + AL+ G  +H  V +  +     +G AL+ MY KCG 
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D A+ VFE ++ KEV +WN MI G A HG   +A+ LF  M++  + PD +T   VLSA
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H G++D+G +    M Q YGI    +HY C++DLLGRAG L +A+ ++ +MP EP+AA
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
            W ALLGA R HG  E GE+  K++ EMEP N               R  DV +MR  M+
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 624

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           +RG+K  PG S ++V   IH F  GD  HP+   IY  L+++  K+K EGY  ++  VL 
Sbjct: 625 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH 684

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEEK    KYHSEKLA+AFG +    G  IRVIKNLRVCEDCH+A K ISK+  R I
Sbjct: 685 DVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLI 744

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           I+RD  R+HHF  G+CSC D+W
Sbjct: 745 ILRDSHRFHHFNGGQCSCGDYW 766



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 207/464 (44%), Gaps = 82/464 (17%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL++FNS+ + +   WN+++  CL +++ +    L+ +M   D      ++  +   C  
Sbjct: 68  ALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRD----LVSWNVMISGCVR 123

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
               +    +   + +     DV   ++ +  YA  G V +A++I D+    + I WN +
Sbjct: 124 YRNLRAARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGM 179

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           +  Y++ G IE A+ LF+S  D    S+N M+ G+ +  R  +AR +F+ M ++DE++W+
Sbjct: 180 LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 239

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KR 324
            +I GY ++G   EA  +F E     +    F  + +++     G LD+   + D + ++
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEK 295

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM---------------- 368
           NS+  +A++       Y +C R+D A ++FE M  + V +WN M                
Sbjct: 296 NSVSWNAIIAG-----YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 350

Query: 369 ---------------IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA----- 408
                          I G A  G  ++A+ LF +M+R+  R +R TF   LS CA     
Sbjct: 351 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 410

Query: 409 ------HAGMIDRGLQALTYMQQ----MY--------------GI-DPEVEHYGCIVDLL 443
                 H  ++  GL++  Y+      MY              GI + EV  +  ++   
Sbjct: 411 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 470

Query: 444 GRAGYLAEAEEVISSMP---MEPNAAVWEALLGACRKHGEVEFG 484
            R G+  EA  +  SM    + P+      +L AC   G V+ G
Sbjct: 471 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 514



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 162/350 (46%), Gaps = 48/350 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G  + A ++ +   +   I WNA+I G L       A++LF+    ++  S+N MISG  
Sbjct: 63  GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCV 122

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           R+     AR LF++M ++D ++W+A++ GY ++GY KEA E+F+EM      P K  +S 
Sbjct: 123 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM------PCKNSISW 176

Query: 302 --VLAACASLGALD--------QGIW--------IHDHVKRNSIC-----------VDAV 332
             +LAA    G ++        +  W        +  +VKRN +             D V
Sbjct: 177 NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 236

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
               ++  YA+ G L  A ++FE+  +++VFTW AM+ G   +G  D+A  +F  M  + 
Sbjct: 237 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK- 295

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
              + +++  +++       +D+  +    M         V  +  ++    + G +A+A
Sbjct: 296 ---NSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQA 347

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
                 MP + ++  W A++    + G   +GE    + +EM+    R +
Sbjct: 348 RNFFDRMP-QRDSISWAAIIAGYAQSG---YGEEALHLFVEMKRDGERLN 393


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/466 (45%), Positives = 313/466 (67%), Gaps = 15/466 (3%)

Query: 204 ALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           ALID Y KCGDI  A E+F +  + +   S+NAMI G+ + G  + AR LF++M D+D +
Sbjct: 277 ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLV 336

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           T++++I GY   G  +EAL +F +M+R  ++   F +  +L ACASLGAL QG  +H  +
Sbjct: 337 TFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACI 396

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           ++  + VD  LGTAL+DMY KCGR++ A  VF+ M +++V TW+AMI GLA +G    A+
Sbjct: 397 EQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAAL 456

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           E FF M+ +  +P+ +T+  +L+AC+H+ ++D G      M+ ++ I P +EHYGC++DL
Sbjct: 457 EYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDL 516

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------ 496
           LGR+G L EA +++ +MPM+PNA +W ++L ACR H +        + LL++EP      
Sbjct: 517 LGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVY 576

Query: 497 --------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                    +R+ +D +++R+LM+ERG+K   G S I V G +H+F   D +HPQ+ EI 
Sbjct: 577 VQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEIT 636

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
            M+++I  +LK  GYSP +SQ+  D+DEEEKE A   HSEK+AIAFG I+  P   + +I
Sbjct: 637 AMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHII 696

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLRVCEDCHSA KLIS+++ R+IIVRDR R+HHFR+G CSCNDFW
Sbjct: 697 KNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 218/486 (44%), Gaps = 76/486 (15%)

Query: 45  SWQHLKQAHAVILKSGHF----QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           S +   + HAV++ SG         ++  +LV C   +   +   AL +F+ +   + F+
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRM-PCSTFL 69

Query: 101 WNSVLRACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           +++ LRAC   +  P   + LY  M       + FT+  +FK C+         +  AHV
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCA---------RGRAHV 120

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +   LC  +H         ACF      R +L        +  N +I  Y++ G    A+
Sbjct: 121 L---LCQMLHA--------ACF------RTMLPSAVP---LVSNPIIHMYVELGLAGDAR 160

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
             F     K+  ++  +ISG A+ G  ++A  L      ++ I+W+ +I GY++ G   E
Sbjct: 161 RAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAE 220

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A++ FN M  D I+P +  +  +L+ACA L  L  G  +H  V    + +   L  AL+D
Sbjct: 221 AVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALID 280

Query: 340 MYAKCGRLDMAWKV--------------------------------FEDMKMKEVFTWNA 367
           MYAKCG +  AW+V                                F+ M+ +++ T+N+
Sbjct: 281 MYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNS 340

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I G    GR  +A+ LF +M+R  +R D  T   +L+ACA  G + +G +AL    +  
Sbjct: 341 LITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQG-RALHACIEQR 399

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            ++ ++     ++D+  + G + EA  V  +M +  +   W A++     +G       +
Sbjct: 400 LVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIAGLAFNG-------M 451

Query: 488 GKILLE 493
           GK  LE
Sbjct: 452 GKAALE 457



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 108/237 (45%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +  + ++A  +F+ +   ++  +NS++   +        + L+ +M   D + + FT  +
Sbjct: 316 KLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVS 375

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC+   A  +G  +HA + +  +  D+++ ++ + MY   G V +A  +    S  D
Sbjct: 376 LLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRD 435

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  W+A+I G    G  + A E F   K      N+ +Y A+++  +     +E R  F 
Sbjct: 436 VHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFE 495

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EM     I      +  +ID   + G   EA+++   M    ++P   + + +L+AC
Sbjct: 496 EMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTM---PMQPNAVIWASILSAC 549


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/582 (40%), Positives = 343/582 (58%), Gaps = 58/582 (9%)

Query: 96  PNV--FVWNSVLRAC----LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           PN+  FVWN+++RA     +++      +SLY  M      P+  T+P + ++ +     
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSIN---TP 76

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G Q+HA ++  GL  D  V++S                               LI+ Y
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTS-------------------------------LINMY 105

Query: 210 LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
             CG    A++ F      +  S+NA+I   A+ G    ARKLF++M +K+ I+WS +I 
Sbjct: 106 SSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIH 165

Query: 270 GYTKDGYYKEALEVFNEMQR---DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           GY   G YK AL +F  +Q     +++P +F +S VL+ACA LGAL  G W+H ++ +  
Sbjct: 166 GYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTG 225

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELF 385
           + +D VLGT+L+DMYAKCG ++ A  +F+++   K+V  W+AMI   +MHG +++ +ELF
Sbjct: 226 MKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELF 285

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M  + +RP+ +TF  VL AC H G++  G +    M   YG+ P ++HYGC+VDL  R
Sbjct: 286 ARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSR 345

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG + +A  V+ SMPMEP+  +W ALL   R HG+VE  E     LLE++P N       
Sbjct: 346 AGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLL 405

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   R  +V  +R LM+ RGIK  PG S+++V+GVI EF  GD SHP++  +Y+ML
Sbjct: 406 SNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVML 465

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
            +I+++L+  GY  N+ +VL D+DEE KE A   HSEKLAIA+ F+ T PG TIR++KNL
Sbjct: 466 DEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNL 525

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           R+C DCH A K+ISK F R+IIVRD  R+HHF+NG CSC D+
Sbjct: 526 RICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 135/294 (45%), Gaps = 35/294 (11%)

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV---GVDSKP 131
           HAN++     +A K+F+ + + NV  W+ ++   +   E    +SL+  +    G   +P
Sbjct: 134 HANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRP 193

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N+FT  +V  AC+   A + G  VHA++ K G+  DV + +S I MYA  G + +A+ I 
Sbjct: 194 NEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIF 253

Query: 192 DD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRF 246
           D+ G + DV+ W+A+I  +   G  E   ELF    +     N  ++ A++      G  
Sbjct: 254 DNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLV 313

Query: 247 EEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            E  + F  M ++  ++     +  ++D Y++ G  ++A  V   M    ++P   +   
Sbjct: 314 SEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSM---PMEPDVMI--- 367

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLG---------TALVDMYAKCGR 346
                   GAL  G  IH  V+   I +  +L            L ++YAK GR
Sbjct: 368 -------WGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGR 414


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/663 (36%), Positives = 371/663 (55%), Gaps = 87/663 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           Q L+  HA ++K+G    +Y    L++ C  +  F     A+ VF ++ +PN+ +WN++ 
Sbjct: 4   QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R     ++P   + LY  M+ +   PN +T+P + K+C+ ++A KEG Q+H HV+K G  
Sbjct: 64  RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123

Query: 166 GDVHVKSSGIQMY-------------------------------ACFGCVNKARQILDDG 194
            D++V +S I MY                               A  G +  A+++ D+ 
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGS----- 232
              DV+ WNA+I GY + G+ + A ELFK     N                 +GS     
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243

Query: 233 -----------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                             NA+I  +++ G  E A  LF  +  KD I+W+ +I GYT   
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL 333
            YKEAL +F EM R    P    +  +L ACA LGA+D G WIH ++ +    +   + L
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL 363

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            T+L+DMYAKCG ++ A +VF  +  K + +WNAMI G AMHGRAD + ++F +M++  +
Sbjct: 364 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGI 423

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD ITF  +LSAC+H+GM+D G      M Q Y + P++EHYGC++DLLG +G   EAE
Sbjct: 424 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 483

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E+I++M MEP+  +W +LL AC+ HG VE GE   + L+++EP+N               
Sbjct: 484 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAG 543

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R ++VA  R L+ ++G+K  PG S I+++ V+HEF  GD  HP+ +EIY ML+++   L+
Sbjct: 544 RWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 603

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             G+ P++S+VL +++EE KE A ++HSEKLAIAFG I+T PG  + ++KNLRVC +CH 
Sbjct: 604 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHE 663

Query: 620 ATK 622
           A K
Sbjct: 664 AYK 666


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/660 (36%), Positives = 368/660 (55%), Gaps = 57/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  ++K+G   D +V   L+  +  S   +  LA  +F+ +   +V  W++++R+  
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMY--SEVGSLALARLLFDKIENKDVVSWSTMIRSYD 201

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD-- 167
                   + L  +M  +  KP++    ++    +     K G  +HA+V++NG CG   
Sbjct: 202 RSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSG 261

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE----------- 216
           V + ++ I MY     +  AR++ D  SK+ +I W A+I  Y+ C ++            
Sbjct: 262 VPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG 321

Query: 217 --------------------GAKELFK-----STKDKNTGSY---NAMISGFARFGRFEE 248
                               GA EL K     + ++  T S     A I  + + G    
Sbjct: 322 EGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRS 381

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F+    KD + WSA+I  Y ++    EA ++F  M    I+P +  +  +L  CA 
Sbjct: 382 ARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAK 441

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            G+L+ G WIH ++ +  I  D +L T+ VDMYA CG +D A ++F +   +++  WNAM
Sbjct: 442 AGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAM 501

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G AMHG  + A+ELF +M+   + P+ ITF   L AC+H+G++  G +    M   +G
Sbjct: 502 ISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFG 561

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
             P+VEHYGC+VDLLGRAG L EA E+I SMPM PN AV+ + L AC+ H  ++ GE   
Sbjct: 562 FTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAA 621

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K  L +EP                 R  DVA +R+ MK+ GI   PG S I+VNG++HEF
Sbjct: 622 KQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEF 681

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HP  K++Y M+ ++ EKL+  GY+P+ S VL +ID+E+K +A  YHSEKLA+A+
Sbjct: 682 IMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAY 741

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG  IR++KNLRVC+DCH+ATKL+SK++ R+IIVRDR R+HHF+ G CSC D+W
Sbjct: 742 GLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 232/524 (44%), Gaps = 68/524 (12%)

Query: 25  PTSEFSQ---KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           PT +F+Q   K  +  +  + H +    +Q H      GHF         +K  +N  + 
Sbjct: 32  PTLKFTQSQPKPNVPHIQQELHINLNETQQLH------GHF---------IKTSSNCSYR 76

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
               AL+ ++S    N  + + ++ + +++N P     +Y+ M G D++ + F  P+V K
Sbjct: 77  VPLAALESYSS----NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLK 132

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC +  +   G +VH  VVKNG  GDV V ++ I MY+  G +  AR + D     DV+ 
Sbjct: 133 ACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVS 192

Query: 202 WNALIDGYLKCGDIEGAKELFKS-----TKDKNTGSYN---------------------- 234
           W+ +I  Y + G ++ A +L +       K    G  +                      
Sbjct: 193 WSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVM 252

Query: 235 --------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                         A+I  + +      AR++F+ ++    I+W+A+I  Y       E 
Sbjct: 253 RNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEG 312

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           + +F +M  + + P +  +  ++  C + GAL+ G  +H    RN   +  VL TA +DM
Sbjct: 313 VRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDM 372

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y KCG +  A  VF+  K K++  W+AMI   A +   D+A ++F  M    +RP+  T 
Sbjct: 373 YGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTM 432

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +L  CA AG ++ G    +Y+ +  GI  ++      VD+    G +  A  + +   
Sbjct: 433 VSLLMICAKAGSLEMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCGDIDTAHRLFAE-A 490

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            + + ++W A++     HG    GE   ++  EME      +D+
Sbjct: 491 TDRDISMWNAMISGFAMHGH---GEAALELFEEMEALGVTPNDI 531


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/625 (37%), Positives = 360/625 (57%), Gaps = 49/625 (7%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +KQ HA IL +G  Q  YV   L++             L +FN V+ PN F++N+++R 
Sbjct: 61  QIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRG 120

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG- 166
            L           YS M      P  FT+  +FKAC        G Q+H   +  G  G 
Sbjct: 121 YLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGE 180

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D+HV                                N++ID Y+KCG +E  +++F    
Sbjct: 181 DLHVG-------------------------------NSMIDMYIKCGFLECGRKVFDEMP 209

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +++  S+  +IS + + G  E A +LF+ +  KD + W+ ++ G+ ++   +EA+  F +
Sbjct: 210 NRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEK 269

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV--DAVLGTALVDMYAKC 344
           MQ   ++  +  L  V++ACA LGA     WI D  +++        V+G+AL+DMY+KC
Sbjct: 270 MQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKC 329

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +  A++VF+ MK + V+++++MI G AMHGR  DA++LF +M + +++P+R+TF  VL
Sbjct: 330 GSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVL 389

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+HAGM+++G Q    M++ YGI P  +HY C+VDLLGRAG L EA E++ +MP+EP+
Sbjct: 390 TACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPH 449

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKL 510
             VW ALLGACR H   +        L E+EP                 R +DV+ +RKL
Sbjct: 450 GGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKL 509

Query: 511 MKERGIKTNPGSSMIDV-NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           M+ RG++ NP  S I+   G++HEF +GD +HP+  EI   L+ ++++L+ +GY P+ S 
Sbjct: 510 MRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSS 569

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           V +D+++E+K      HSEKLA+AFG I+T PG+ IR++KNLR+CEDCHS     S++  
Sbjct: 570 VSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITG 629

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+IIVRD +R+HHF +G CSC +FW
Sbjct: 630 REIIVRDIMRFHHFHDGICSCGNFW 654


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/658 (37%), Positives = 368/658 (55%), Gaps = 61/658 (9%)

Query: 20  SATNIPT--SEF---SQKTILDILN-TKCHTSWQHLK---QAHAVILKSGHFQDHYVSGT 70
           S T+I T  SEF   S  T  + L+  +  +S +HL    Q HA I+ SG F+ H+    
Sbjct: 30  SFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHHHSITH 88

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +  S F   +LA  VF+S   P+  +WNS++RA     +    + +Y  MV     
Sbjct: 89  LINLY--SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE---- 142

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
                                         K GL  DV + +  + MY+  G + +AR++
Sbjct: 143 ------------------------------KGGLERDVFIGAGLVDMYSKMGDLKRAREV 172

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            D   K DV+ WNA+I G  +  D   A+ +F    D++  S+  M++G+A  G F E  
Sbjct: 173 FDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 232

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +LF++M   + +TW+ II  Y ++G+ KEA+  F++M+ +   P       VL A A L 
Sbjct: 233 ELFDKMKLGN-VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA 291

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A  +G+  H  + +     + ++G +L+DMYAKCG+LD + K+F +M  K+  +WNAM+ 
Sbjct: 292 AFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLS 351

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A+HG  D AI LF  MQ  +++ D ++F  VLSAC HAG+++ G +    M   Y I 
Sbjct: 352 GYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 411

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHY C+VDLLGRAG   E    I  MP+EP+A VW ALLG+CR H  V+ GE     
Sbjct: 412 PDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDH 471

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L+++EP+N               R  D  K R  M + G+K  PG S +++   +H FR 
Sbjct: 472 LVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRV 531

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHPQ++ ++L+   ++EK++  GY P+ S VL +++EE+KE     HSE+LAI F  
Sbjct: 532 GDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFAL 591

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG+TI+++KNLRVC DCH+ TK ISK+  R IIVRD  R+HHF +G CSCND+W
Sbjct: 592 LNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 377/660 (57%), Gaps = 61/660 (9%)

Query: 15  KPEEISATNIPTS--EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           KP   S +N P S     QK I+ +L    H +   +   HA ++++GH QD ++   L+
Sbjct: 32  KPHPNSNSN-PKSLKSLDQKQIISLLQRSRHIN--QVLPIHAQLIRNGHSQDPFMVFELL 88

Query: 73  ----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
               KCHA       + A ++F   H PNV+++ +++   +        I LYS M+   
Sbjct: 89  RSCSKCHA------IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHES 142

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+ +   ++ KAC    A +EG +VH+  +K G   +  V+   +++Y          
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYG--------- 193

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                                 KCG++  A+ +F+   +    S   MIS ++  G  EE
Sbjct: 194 ----------------------KCGELGDARRVFEEMPEDVVAS-TVMISSYSDQGLVEE 230

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F+ +  KD + W+A+IDG+ ++     ALE F  MQ + ++P +F + CVL+AC+ 
Sbjct: 231 AGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 290

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL+ G W+H ++++  I ++  +G AL++MY++CG +D A  VF++MK ++V T+N M
Sbjct: 291 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GL+M+G++  AIELF  M   ++RP  +TF  VL+AC+H G++D G +    M + Y 
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           ++P++EHYGC+VDLLGR G L EA ++I +M M P+  +   LL AC+ H  +E GE++ 
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 489 K--------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K              +L  +   + +  + A++R  MKE G++  PG S I+VN  IHEF
Sbjct: 471 KELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HPQ + IY  L+++   L++EGY P    VL DI++ EKE A   HSE+LAI +
Sbjct: 531 LLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICY 590

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T+P   IRV+KNLRVC DCHSA KLI+K+ +R I+VRDR R+H+F NG CSC D+W
Sbjct: 591 GLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/502 (43%), Positives = 313/502 (62%), Gaps = 14/502 (2%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV   ++ +  Y   G +++AR++ D   + + + WNA+I GY++C  ++ A+ELF++  
Sbjct: 184 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 243

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            +N  S+N MI+G+A+ G   +AR  F+ M  +D I+W+AII GY + GY +EAL +F E
Sbjct: 244 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 303

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+RD  +  +   +  L+ CA + AL+ G  +H  V +  +     +G AL+ MY KCG 
Sbjct: 304 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 363

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D A+ VFE ++ KEV +WN MI G A HG   +A+ LF  M++  + PD +T   VLSA
Sbjct: 364 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 423

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H G++D+G +    M Q YGI    +HY C++DLLGRAG L +A+ ++ +MP EP+AA
Sbjct: 424 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 483

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
            W ALLGA R HG  E GE+  K++ EMEP N               R  DV +MR  M+
Sbjct: 484 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 543

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           +RG+K  PG S ++V   IH F  GD  HP+   IY  L+++  K+K EGY  ++  VL 
Sbjct: 544 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH 603

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEEK    KYHSEKLA+AFG +    G  IRVIKNLRVCEDCH+A K ISK+  R I
Sbjct: 604 DVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLI 663

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           I+RD  R+HHF  G+CSC D+W
Sbjct: 664 ILRDSHRFHHFNGGQCSCGDYW 685



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 170/370 (45%), Gaps = 46/370 (12%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV   ++ +  YA  G V +A++I D+    + I WN ++  Y++ G IE A+ LF+S  
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 119

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D    S+N M+ G+ +  R  +AR +F+ M ++DE++W+ +I GY ++G   EA  +F E
Sbjct: 120 DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE 179

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCG 345
                +    F  + +++     G LD+   + D + ++NS+  +A++       Y +C 
Sbjct: 180 SPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG-----YVQCK 230

Query: 346 RLDMAWKVFEDMKMKEVFTWNAM-------------------------------IGGLAM 374
           R+D A ++FE M  + V +WN M                               I G A 
Sbjct: 231 RMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 290

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
            G  ++A+ LF +M+R+  R +R TF   LS CA    ++ G Q    + +  G++    
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA-GLESGCY 349

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               ++ +  + G + +A  V   +  E     W  ++    +HG   FG+    +   M
Sbjct: 350 VGNALLVMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHG---FGKEALMLFESM 405

Query: 495 EPQNRRCDDV 504
           +      DDV
Sbjct: 406 KKTGILPDDV 415



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 48/295 (16%)

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           + G  R+     AR LF++M ++D ++W+A++ GY ++GY KEA E+F+EM      P K
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM------PCK 90

Query: 297 FVLSC--VLAACASLGALD--------QGIW--------IHDHVKRNSIC---------- 328
             +S   +LAA    G ++        +  W        +  +VKRN +           
Sbjct: 91  NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP 150

Query: 329 -VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             D V    ++  YA+ G L  A ++FE+  +++VFTW AM+ G   +G  D+A  +F  
Sbjct: 151 ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M  +    + +++  +++       +D+  +    M         V  +  ++    + G
Sbjct: 211 MPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNG 261

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
            +A+A      MP + ++  W A++    + G   +GE    + +EM+    R +
Sbjct: 262 DIAQARNFFDRMP-QRDSISWAAIIAGYAQSG---YGEEALHLFVEMKRDGERLN 312


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/583 (38%), Positives = 343/583 (58%), Gaps = 45/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+     N+ ++N+++   + H     V+ +  EM+    +P+K T  +   AC+ 
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQ 344

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G   HA+V++NGL G  ++                                NA+
Sbjct: 345 LGDLSVGKSSHAYVLRNGLEGWDNIS-------------------------------NAI 373

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           ID Y+KCG  E A ++F+   +K   ++N++I+G  R G  E A ++F+EM ++D ++W+
Sbjct: 374 IDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWN 433

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I    +   ++EA+E+F EMQ   I   +  +  + +AC  LGALD   W+  ++++N
Sbjct: 434 TMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKN 493

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            I VD  LGTALVDM+++CG    A  VF+ M+ ++V  W A IG +AM G  + AIELF
Sbjct: 494 DIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELF 553

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M  +K++PD + F  +L+AC+H G +D+G Q    M++ +GI P + HYGC+VDLLGR
Sbjct: 554 NEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGR 613

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------- 498
           AG L EA ++I SMP+EPN  VW +LL ACRKH  VE      + L ++ P+        
Sbjct: 614 AGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLL 673

Query: 499 -------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   +  DVA++R  MKE+G++  PGSS I+V G+IHEF +GD SH +   I LML
Sbjct: 674 SNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLML 733

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           ++I  +L   GY P+++ VL D+DE+EKE     HSEKLA+A+G I T  G  IRV+KNL
Sbjct: 734 EEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNL 793

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCHS  KL+SK++ R+I VRD  RYH F+ G CSC D+W
Sbjct: 794 RMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 216/497 (43%), Gaps = 79/497 (15%)

Query: 5   VTTTDLPHH--LKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHF 62
           + TT  P    L P  +   N  T   S K +++     C T  + LKQ H  ++K G  
Sbjct: 1   MATTLFPSSTLLVPASLKEANPITRNSSSKLLVN-----CKT-LKELKQLHCDMMKKG-L 53

Query: 63  QDHYVSGTLVKCHANS----RFSNFELALKVF--NSVHKPNVFVWNSVLRACLEHNEPWR 116
             H  +  L K  A+S       + + A   F  +  +  ++F++N ++R         +
Sbjct: 54  LCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQ 113

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
            I LY +M+ +   P+K+T+P +  ACS   A  EGVQVH  V                 
Sbjct: 114 AILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV----------------- 156

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAM 236
                         L  G + D+   N+LI  Y +CG                       
Sbjct: 157 --------------LKMGLEGDIFVSNSLIHFYAECG----------------------- 179

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
                   + +  RKLF+ M +++ ++W+++I+GY+     KEA+ +F +M    ++P  
Sbjct: 180 --------KVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNP 231

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
             + CV++ACA L  L+ G  +  ++    + +  ++  ALVDMY KCG +  A ++F++
Sbjct: 232 VTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDE 291

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
              K +  +N ++     H  A D + +  +M ++  RPD++T    ++ACA  G +  G
Sbjct: 292 CANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG 351

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
             +  Y+ +  G++        I+D+  + G    A +V   MP       W +L+    
Sbjct: 352 KSSHAYVLR-NGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLV 409

Query: 477 KHGEVEFGERLGKILLE 493
           + G++E   R+   +LE
Sbjct: 410 RDGDMELAWRIFDEMLE 426



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 10/288 (3%)

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE-----ITWSAIIDGYTKDGYYKEALE 282
           K   + N +I+   + G  E      N   D D        ++ +I GY   G   +A+ 
Sbjct: 57  KPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAIL 116

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++ +M    I P K+    +L+AC+ + AL +G+ +H  V +  +  D  +  +L+  YA
Sbjct: 117 LYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYA 176

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG++D+  K+F+ M  + V +W ++I G +    + +A+ LFF+M    + P+ +T  C
Sbjct: 177 ECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVC 236

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           V+SACA    ++ G +  +Y+ ++ G++        +VD+  + G +  A ++       
Sbjct: 237 VISACAKLKDLELGKKVCSYISEL-GMELSTIMVNALVDMYMKCGDICAARQIFDECA-N 294

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
            N  ++  ++     H   E+   +  IL EM  +  R D V  +  +
Sbjct: 295 KNLVMYNTIMSNYVHH---EWASDVLVILDEMLQKGPRPDKVTMLSTI 339



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + ELA ++F+ + + ++  WN+++ A ++ +     I L+ EM       ++ T   
Sbjct: 410 RDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVG 469

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC    A      V  ++ KN +  D+ + ++ + M++  G  + A  +     K D
Sbjct: 470 IASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRD 529

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEARKLFN 254
           V  W A I      G+ EGA ELF    ++        + A+++  +  G  ++ R+LF 
Sbjct: 530 VSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFW 589

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            M     I      +  ++D   + G  +EA+++   M    I+P   V   +LAAC
Sbjct: 590 SMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSM---PIEPNDVVWGSLLAAC 643


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 371/697 (53%), Gaps = 64/697 (9%)

Query: 20  SATNIP----TSEFSQKTILDILNTKCHT-SWQHLKQAHAVILKSGHFQ-DHYVSGTLVK 73
           +AT IP    TS F       +L +  ++ S     Q HA +   G  + + Y++  L  
Sbjct: 7   TATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAA 66

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C+A     +   A  +F+ +   N F+WNS++R    +N P R + LY +M+    KP+ 
Sbjct: 67  CYAVC--GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDN 124

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           FTYP V KAC      + G +VHA VV  GL  DV+V +S + MY  FG V  AR + D 
Sbjct: 125 FTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDR 184

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELF------------------------------- 222
               D+  WN ++ G++K G+  GA E+F                               
Sbjct: 185 MLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVG 244

Query: 223 -----------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                      +S +  N    N++I  +        ARKLF  +  KD ++W+++I GY
Sbjct: 245 KEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY 304

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            K G   +ALE+F  M      P +  +  VLAAC  + AL  G  +  +V +    V+ 
Sbjct: 305 EKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNV 364

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V+GTAL+ MYA CG L  A +VF++M  K +     M+ G  +HGR  +AI +F++M  +
Sbjct: 365 VVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGK 424

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + PD   F  VLSAC+H+G++D G +    M + Y ++P   HY C+VDLLGRAGYL E
Sbjct: 425 GVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDE 484

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------- 498
           A  VI +M ++PN  VW ALL ACR H  V+      + L E+ P               
Sbjct: 485 AYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAA 544

Query: 499 -RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
            RR +DV  +R L+ +R ++  P  S +++N ++H+F  GD SH Q  +IY  LK + E+
Sbjct: 545 ERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQ 604

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           LK  GY P++S VL+D++EE KE     HSE+LA+AF  INT PG TIR+ KNLRVC DC
Sbjct: 605 LKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDC 664

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+  K+ISK+  R+II+RD  R+HHFR+G CSC  +W
Sbjct: 665 HTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 365/631 (57%), Gaps = 81/631 (12%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQD--HYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98
           KC TS + LKQ  A  +K+ H Q+    ++  +  C  N   ++ + A ++F ++ +P++
Sbjct: 35  KC-TSLKELKQIQAFSIKT-HLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDI 92

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158
            ++NS+ R     N P + ISL+ + +  +  P+ +T+P++ KAC + +A ++G Q+H  
Sbjct: 93  VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCL 152

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
            +K GL                              +++  +C   LI+ Y  C D++GA
Sbjct: 153 AIKLGL------------------------------NENPYVC-PTLINMYAGCNDVDGA 181

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           +                               ++F+E+ +   ++++AII GY +     
Sbjct: 182 Q-------------------------------RVFDEILEPCVVSYNAIITGYARSSRPN 210

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL +F ++Q  K+KP    +  VL++CA LGALD G WIH++VK+N +     + TAL+
Sbjct: 211 EALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALI 270

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKCG LD A  VFE M +++   W+AMI   AMHG+  D + +F +M R K++PD I
Sbjct: 271 DMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEI 330

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  +L AC+H G++D G +    M ++YGI P ++HYGC+VDLLGRAG L EA + I  
Sbjct: 331 TFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDE 390

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME--------------PQNRRCDDV 504
           +P++P   +W  LL +C  HG +E  +++   +LE++               +  + +DV
Sbjct: 391 LPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDV 450

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
             +RKLM  +G    PG S I+V+ V+HEF +GDG H     ++  L +++++LK  GY 
Sbjct: 451 DTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYV 510

Query: 565 PNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
           P++S V+  D+++EEKE   +YHSEKLAI+FG +NT PG TIRV+KNLRVC DCHSA KL
Sbjct: 511 PDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKL 570

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IS +  R+II+RD  R+HHF++GKCSC D+W
Sbjct: 571 ISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 369/662 (55%), Gaps = 60/662 (9%)

Query: 51  QAHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q HA  L+ G    + + SG+LV  HA  RF     A +VF+ + + +V  WN++L    
Sbjct: 87  QLHACALRLGLLHPNVFASGSLV--HAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLC 144

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      ++L   MVG     +  T  +V   C +       + +H + VK+GL G++ 
Sbjct: 145 RNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELF 204

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           V ++ I +Y   G + +A  +    +  D++ WN++I    + G +  A ELF    +  
Sbjct: 205 VCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESG 264

Query: 228 ------------------------KNTGSY--------------NAMISGFARFGRFEEA 249
                                   K+   Y              NAM+  +A+  + + A
Sbjct: 265 VCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAA 324

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACAS 308
           +K+F+ + D+D ++W+ +I GY ++G   EA+ ++N+M   + +KP +     VL A + 
Sbjct: 325 QKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSY 384

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LG L QG+ +H    +  + +D  + T L+D+YAKCG+L  A  +FE M  +    WNA+
Sbjct: 385 LGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAI 444

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GL +HG    A+ LF +MQ+E+++PD +TF  +L+AC+HAG++D+G      MQ +YG
Sbjct: 445 IAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYG 504

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P  +HY C+VD+LGRAG L EA E I SMP++P++AVW ALLGACR HG VE G+   
Sbjct: 505 IVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVAS 564

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E++P+N               + D V  +R L++ + ++  PG S ++V G +  F
Sbjct: 565 QNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVF 624

Query: 535 RTGDGS--HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            +G  +  HPQ +EI   L  ++ K+K  GY P+ S VL D++E+EKE     HSE+LAI
Sbjct: 625 YSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAI 684

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG INT PG  + + KNLRVC DCHSATK ISK+ +R+IIVRD  R+HHF++G CSC D
Sbjct: 685 AFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGD 744

Query: 653 FW 654
           FW
Sbjct: 745 FW 746


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/659 (35%), Positives = 359/659 (54%), Gaps = 56/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+ H   L+     D  V+  L+  +A  +    E A ++F  +   ++  W++++ A +
Sbjct: 349  KEIHGCALQQRIDSDILVATPLMVMYA--KCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +   P   +SL+ EM     KPN+ T  ++  AC+     K G  +H   VK  +  D+ 
Sbjct: 407  QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
              ++ + MYA  G    A    +  S  D++ WN+LI+GY + GD   A ++F   +   
Sbjct: 467  TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 227  -------------------DKNTGS-----------------YNAMISGFARFGRFEEAR 250
                               D + G+                  NA+I  +A+ G    A 
Sbjct: 527  INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 251  KLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             LFN+ +  KDE+TW+ II  Y ++G+ KEA+  F++M+ +   P       VL A A L
Sbjct: 587  FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL 646

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             A  +G+  H  + +     + ++G +L+DMYAKCG+LD + K+F +M  K+  +WNAM+
Sbjct: 647  AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAML 706

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
             G A+HG  D AI LF  MQ  +++ D ++F  VLSAC HAG+++ G +    M   Y I
Sbjct: 707  SGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHI 766

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             P++EHY C+VDLLGRAG   E    I  MP+EP+A VW ALLG+CR H  V+ GE    
Sbjct: 767  KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 490  ILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             L+++EP+N               R  D  K R  M + G+K  PG S +++   +H FR
Sbjct: 827  HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFR 886

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD SHPQ++ ++L+   ++EK++  GY P+ S VL +++EE+KE     HSE+LAI F 
Sbjct: 887  VGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFA 946

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +NT PG+TI+++KNLRVC DCH+ TK ISK+  R IIVRD  R+HHF +G CSCND+W
Sbjct: 947  LLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 246/509 (48%), Gaps = 55/509 (10%)

Query: 20  SATNIPT--SEF---SQKTILDILN-TKCHTSWQHLK---QAHAVILKSGHFQDHYVSGT 70
           S T+I T  SEF   S  T  + L+  +  +S +HL    Q HA I+ SG F+ H+    
Sbjct: 10  SFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHHHSITH 68

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +  S F   +LA  VF+S   P+  +WNS++RA     +    + +Y  MV    +
Sbjct: 69  LINLY--SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+K+T+  V KAC+     +EGV  H  + + GL  DV + +  + MY+  G + +AR++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST------------------------- 225
            D   K DV+ WNA+I G  +  D   A + F+S                          
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 226 ------------KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                       +D ++   N +I  +++ G  + AR++F++M D+D+++W  ++ GY  
Sbjct: 247 ELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G + E LE+F++M+   ++  K        A A    L++G  IH    +  I  D ++
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            T L+ MYAKCG  + A ++F  ++ +++  W+A+I  L   G  ++A+ LF +MQ +KM
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 394 RPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           +P+R+T   +L ACA   ++  G  +   T    M   D ++     +V +  + G+   
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM---DSDLSTGTALVSMYAKCGFFTA 483

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGE 480
           A    + M    +   W +L+    + G+
Sbjct: 484 ALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 209/470 (44%), Gaps = 46/470 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  I + G  +D ++   LV  +  S+  + + A +VF+ + K +V  WN+++    +  
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMY--SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +P   +  +  M  V  +P+  +   +F         +    +H +V +      V   S
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV---S 266

Query: 173 SG-IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------------ 213
           +G I +Y+  G V+ AR++ D     D + W  ++ GY   G                  
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 214 -----------------DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                            D+E  KE+     +   D +      ++  +A+ G  E+A++L
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F  +  +D + WSAII    + GY +EAL +F EMQ  K+KP +  L  +L ACA L  L
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
             G  IH    +  +  D   GTALV MYAKCG    A   F  M  +++ TWN++I G 
Sbjct: 447 KLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGY 506

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A  G   +AI++F+K++   + PD  T   V+ ACA    +D+G      + ++ G + +
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFESD 565

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
                 ++D+  + G L  AE + +      +   W  ++ A  ++G  +
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/632 (37%), Positives = 347/632 (54%), Gaps = 62/632 (9%)

Query: 85   LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            LA   +  V K NV  WNSV+       +    +  +S +  +   P + ++P   K+CS
Sbjct: 1094 LATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCS 1153

Query: 145  ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                   G   H      G   D+ V S+ I MY+  G +  AR + D+    +V+ W +
Sbjct: 1154 ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTS 1213

Query: 205  LIDGYLKCGDIEGAKELFKSTKDKNT---------------------------------- 230
            +I GY++    + A  LFK   ++ T                                  
Sbjct: 1214 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 1273

Query: 231  -------------GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                         G  N ++  +A+ G+   ++K+F+ M +KD+I+W+++I  Y + G  
Sbjct: 1274 HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 1333

Query: 278  KEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EALEVF+ M R   ++     LS VL ACA  GAL  G  IHD V +  +  +  +GT+
Sbjct: 1334 GEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTS 1393

Query: 337  LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
            ++DMY KCGR++MA K F+ MK K V +W AM+ G  MHGRA +A+++F+KM R  ++P+
Sbjct: 1394 IIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 1453

Query: 397  RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             ITF  VL+AC+HAG+++ G      M+  Y I+P +EHYGC+VDL GRAG L EA  +I
Sbjct: 1454 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 1513

Query: 457  SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
              M M+P+  VW +LLGACR H  V+ GE   + L E++P N               R  
Sbjct: 1514 KRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWA 1573

Query: 503  DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
            DV +MR LMK R +   PG S++++ G +H F  GD  HP  + IY  L+K+  +L+  G
Sbjct: 1574 DVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIG 1633

Query: 563  YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
            Y PN + VL D+DEEEKE   + HSEKLA+AFG +N+ PG TI +IKNLRVC DCH+  K
Sbjct: 1634 YVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIK 1693

Query: 623  LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            LISK+  RD +VRD  R+HHF++G CSC D+W
Sbjct: 1694 LISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 228/434 (52%), Gaps = 40/434 (9%)

Query: 23  NIPTSEF----SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           NIP +      ++K +  + N K   +++HL+Q HA I++SG   D  ++  L+  H  S
Sbjct: 16  NIPLTPRGNIRAKKALFLLQNCK---NFKHLRQIHAKIIRSGLSNDQLLTRKLI--HLYS 70

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
                  A+ +F  +  P  F WN ++RA   +    + + LY  MV      +KFT+P 
Sbjct: 71  THGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPF 130

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+   +   G  VH  ++K G  GDV V+                           
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ--------------------------- 163

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
               N LID Y KCG    A ++F+  + +N  S+  +ISG    G  +EAR++F+E+  
Sbjct: 164 ----NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K+ ++W+A+I+GY ++   +EALE+F  MQ + I P ++ +  ++ AC  +G L  G  I
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           HD+  +N I +   LGTAL+DMY+KCG +  A +VFE M  K + TWN+MI  L +HG  
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+ LF +M+R  ++PD ITF  VL AC H   +  G    T M Q YGI P  EHY C
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 439 IVDLLGRAGYLAEA 452
           + +L  R+  L EA
Sbjct: 400 MTELYARSNNLDEA 413



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 36/301 (11%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  ++  GR   A  LF ++ +    TW+ II   T +G  ++AL ++  M    I   
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           KF    V+ AC +  ++D G  +H  + +     D  +   L+D Y KCG    A KVFE
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 356 DMKM-------------------------------KEVFTWNAMIGGLAMHGRADDAIEL 384
            M++                               K V +W AMI G   + + ++A+EL
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +MQ E + P+  T   ++ AC   G++  G     Y  +   I+  V     ++D+  
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIEIGVYLGTALIDMYS 303

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           + G + +A EV  +MP + +   W +++ +   HG    G+    +  EME  N + D +
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSEMERVNVKPDAI 359

Query: 505 A 505
            
Sbjct: 360 T 360



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 138/326 (42%), Gaps = 38/326 (11%)

Query: 53   HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
            H  ++K G      V  TL+  +A  +     ++ KVF+ + + +   WNS++    +  
Sbjct: 1274 HGFVVKKGFDGSIGVGNTLMDAYA--KCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 1331

Query: 113  EPWRVISLYSEMVG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                 + ++  MV  V  + N  T   V  AC+   A + G  +H  V+K  L  +V V 
Sbjct: 1332 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 1391

Query: 172  SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKD 227
            +S I MY   G V  A++  D   + +V  W A++ GY   G  + A ++F    ++   
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451

Query: 228  KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
             N  ++ ++++  +  G  EE    FN M  K +I      +  ++D + + G   EA  
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEA-- 1509

Query: 283  VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-------- 334
             +N ++R K+KP   V   +L AC           IH +V    I    +          
Sbjct: 1510 -YNLIKRMKMKPDFVVWGSLLGACR----------IHKNVDLGEIAAQKLFELDPDNCGY 1558

Query: 335  -TALVDMYAKCGRLDMAWKVFEDMKM 359
               L ++YA  GR    W   E M+M
Sbjct: 1559 YVLLSNLYADAGR----WADVERMRM 1580



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           YT D +  + + +     R  I+ +K +   +L  C +   L Q   IH  + R+ +  D
Sbjct: 7   YTHDVFPSKNIPL---TPRGNIRAKKALF--LLQNCKNFKHLRQ---IHAKIIRSGLSND 58

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +L   L+ +Y+  GR+  A  +F  ++    FTWN +I    ++G ++ A+ L+  M  
Sbjct: 59  QLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVC 118

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           + +  D+ TF  V+ AC +   ID G      + + YG   +V     ++D   + G+  
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            A +V   M +  N   W  ++      G+++   R+
Sbjct: 178 FALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRI 213



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 348  DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
            ++A   ++ +    V +WN++I  LA  G + +A+  F  +++  + P R +F C + +C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 408  AHAGMIDRGLQALTYMQQ-MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
              + + D     +++ Q  ++G + ++     ++D+  + G L +A  +   +P+  N  
Sbjct: 1153 --SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVV 1209

Query: 467  VWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
             W +++    ++ + +    L K  LE E +
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETE 1240


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/689 (34%), Positives = 373/689 (54%), Gaps = 57/689 (8%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           +S   +P++    + I  +++  C  +  HLKQ H  ++      D ++   L+K     
Sbjct: 1   MSIVTVPSATSKVQQIKTLISVACTVN--HLKQIHVSLINHHLHHDTFLVNLLLKRTLFF 58

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R + +   L  F+    PN+F++NS++   + ++     + L+  +       + FT+P 
Sbjct: 59  RQTKYSYLL--FSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPL 116

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+   + K G+ +H+ VVK G   DV   +S + +Y+  G +N A ++ D+     
Sbjct: 117 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS 176

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKD------------------------------- 227
           V+ W AL  GY   G    A +LFK   +                               
Sbjct: 177 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 228 --------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                   KN+     +++ +A+ G+ E+AR +F+ M +KD +TWS +I GY  + + KE
Sbjct: 237 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 296

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            +E+F +M ++ +KP +F +   L++CASLGALD G W    + R+    +  +  AL+D
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG +   ++VF++MK K++   NA I GLA +G    +  +F + ++  + PD  T
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L  C HAG+I  GL+    +  +Y +   VEHYGC+VDL GRAG L +A  +I  M
Sbjct: 417 FLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM 476

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           PM PNA VW ALL  CR   + +  E + K L+ +EP N               R D+ A
Sbjct: 477 PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAA 536

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R +M ++G+K  PG S I++ G +HEF   D SHP   +IY  L+ +  ++++ G+ P
Sbjct: 537 EVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP 596

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +  V FD++EEEKE    YHSEKLA+A G I+TD G  IRV+KNLRVC DCH   KLIS
Sbjct: 597 TTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLIS 656

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+ +R+I+VRD  R+H F NG CSCND+W
Sbjct: 657 KITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/657 (35%), Positives = 372/657 (56%), Gaps = 59/657 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  + K G   D +V+ +LV  H  SR+   ++A KVF  +   +V  WN+++    
Sbjct: 141 KKVHCCVFKMGFEDDVFVAASLV--HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + + + M G   K +  T  ++   C+ ++    GV +H HV+K+GL  DV 
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVF 258

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           V ++ I MY+ FG +  A+ + D     D++ WN++I  Y +  D   A   FK  +   
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                DK+    NA+++ +A+ G    A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ--RDKIKPRKFVLSCVLAACA 307
             +F+++  KD I+W+ ++ GYT++G   EA++ +N M+  RD I P +     ++ A +
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYS 437

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            +GAL QG+ IH  + +NS+ +D  + T L+D+Y KCGRL+ A  +F ++       WNA
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I  L +HGR ++A++LF  M  E+++ D ITF  +LSAC+H+G++D G +    MQ+ Y
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P ++HYGC+VDLLGRAGYL +A E++ +MP++P+A++W ALL AC+ +G  E G   
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              LLE++ +N               + + V K+R L ++RG++  PG S + V      
Sbjct: 618 SDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F TG+ +HP+  EIY  LK +  K+K  GY P+ S V  DI+E+EKE     HSE+LAIA
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIA 737

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           FG I+T P + IR+ KNLRVC DCH+ATK IS++ +R+I+VRD  R+HHF++G CSC
Sbjct: 738 FGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 243/493 (49%), Gaps = 62/493 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA++L  G  Q+  +S  L+  +      +  L+   F+ +HK N+F WNS++ A +
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYIHKKNIFSWNSIISAYV 96

Query: 110 ---EHNEPWRVIS-LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              +++E    ++ L+S   G   +P+ +T+P + KAC ++  D  G +VH  V K G  
Sbjct: 97  RFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC-VSLVD--GKKVHCCVFKMGFE 153

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV V +S + +Y+ +G ++ A ++  D    DV  WNA+I G+ + G+  GA  +    
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM 213

Query: 226 K---------------------------------------DKNTGSYNAMISGFARFGRF 246
           K                                       D +    NA+I+ +++FGR 
Sbjct: 214 KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++A+ +F++M  +D ++W++II  Y ++     AL  F  MQ   I+P    +  + +  
Sbjct: 274 QDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIF 333

Query: 307 ASLGALDQGI---WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + L   DQ I    +   ++R  +  D V+G ALV+MYAK G ++ A  VF+ +  K+  
Sbjct: 334 SQLS--DQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQ--REKMRPDRITFACVLSACAHAGMIDRGLQ--A 419
           +WN ++ G   +G A +AI+ +  M+  R+ + P++ T+  ++ A +H G + +G++  A
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                 +Y    +V    C++DL G+ G L +A  +   +P + +   W A++ +   HG
Sbjct: 451 KLIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHG 506

Query: 480 EVEFGERLGKILL 492
             E   +L K +L
Sbjct: 507 RGEEALQLFKDML 519



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%)

Query: 202 WNALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           +NAL +    C ++   K+L        K +N      +I+ +   G    +R  F+ ++
Sbjct: 25  FNALFNS---CVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQR----DKIKPRKFVLSCVLAACASLGALD 313
            K+  +W++II  Y + G Y EA+   N++        ++P  +    +L AC SL    
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV--- 138

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G  +H  V +     D  +  +LV +Y++ G LD+A KVF DM +K+V +WNAMI G  
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPE 432
            +G A  A+ +  +M+ E ++ D IT A +L  CA +  +  G+  L ++  + +G+D +
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV--LIHLHVLKHGLDSD 256

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           V     ++++  + G L +A+ V   M +  +   W +++ A  ++ +     R  K
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFK 312


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/661 (35%), Positives = 378/661 (57%), Gaps = 54/661 (8%)

Query: 14  LKPEEISATNIPTSEFS------QKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV 67
           + P      N+P    S      ++ I+ +L+ K   + +H++  H   +K+   QD +V
Sbjct: 3   ISPVPTIIANLPNPHSSSHDSNLRRVIISLLH-KNRKNPKHVQSIHCHAIKTRTSQDPFV 61

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
           +  L++ +    +   + A+K+F     PNV+++ S++   +        I+L+ +MV  
Sbjct: 62  AFELLRVYCKVNY--IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRK 119

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
               + +    + KAC +  A   G +VH  V+K+GL  D  +    +++Y         
Sbjct: 120 HVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYG-------- 171

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE 247
                                  KCG +E A+++F    +++  +   MI      G  E
Sbjct: 172 -----------------------KCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVE 208

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA ++FNEM  +D + W+ +IDG  ++G +   LEVF EMQ   ++P +    CVL+ACA
Sbjct: 209 EAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACA 268

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LGAL+ G WIH ++++  + V+  +  AL++MY++CG +D A  +F+ +++K+V T+N+
Sbjct: 269 QLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNS 328

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MIGGLA+HG++ +A+ELF +M +E++RP+ ITF  VL+AC+H G++D G +    M+ ++
Sbjct: 329 MIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIH 388

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI+PEVEHYGC+VD+LGR G L EA + I  M +E +  +  +LL AC+ H  +  GE++
Sbjct: 389 GIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKV 448

Query: 488 GKILLE--------------MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K+L E                    R    A++R+ M++ GI   PG S I+VN  IHE
Sbjct: 449 AKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHE 508

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F +GD  HP+ K IY  L+++    K EGY P +   L DID+E+KE A   HSE+LAI 
Sbjct: 509 FFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAIC 568

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           +G ++T+   T+RV KNLR+C+DCH+  KLI+K+ +R I+VRDR R+HHF NG+CSC D+
Sbjct: 569 YGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDY 628

Query: 654 W 654
           W
Sbjct: 629 W 629


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 352/609 (57%), Gaps = 40/609 (6%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNE------------PWRVISLYSEMVGVDSKP 131
           E A K+F+ +   N   WN +L A +++               W ++S    M G   K 
Sbjct: 170 EEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKK 229

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG------------DVHVKSSGIQMYA 179
                 ++F    + +     + +  +  +NGL              DV   ++ +  + 
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYA-QNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 180 CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239
             G +++A +I ++  + + + WNA+I GY++   IE A+ELF     +NT S+N M++G
Sbjct: 289 QNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G  ++A+ LF+EM  +D I+W+A+I GY + G  +EAL +F +M+RD     +  L
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           +C L++CA + AL+ G  +H  + +       + G AL+ MY KCG ++ A+ VFED+  
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K++ +WN MI G A HG   +A+ LF  M +  ++PD +T   VLSAC+H G++D+G++ 
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEY 527

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M Q YGI    +HY C++DLLGRAG L EA  ++ SMP  P+AA W ALLGA R HG
Sbjct: 528 FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 480 EVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMI 525
           + E GE+  + + EMEP N               R  +V +MR  M+++G+K  PG S +
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           ++    H F  GD SHP+ + IY  L+++  +LK +G+  ++  VL D++EEEKE   KY
Sbjct: 648 EIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKY 707

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEKLA+AFG ++  PG  IRVIKNLRVCEDCH+A K ISK+ +R IIVRD  R+HHF  
Sbjct: 708 HSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSE 767

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 768 GSCSCGDYW 776



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 200/427 (46%), Gaps = 32/427 (7%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           F+ A KVF  +   ++  WN +L   +++       +L+++M   D            + 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 143 CSITEADK--EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             + EA K  + + V   +  NGL          +  Y   G +  AR++ D     +++
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGL----------LSAYVQNGRIEDARRLFDSKMDWEIV 216

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
            WN L+ GY++   ++ A+ LF     ++  S+N MI+G+A+ G   EAR+LF E+  +D
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQGIWI 318
              W+A++ G+ ++G   EA  +F EM      P K  +S   ++A       +++   +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEM------PEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 319 HDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
            D +  RN+   +      +V  YA+CG +D A  +F++M  ++  +W AMI G A  G+
Sbjct: 331 FDQMPSRNTSSWN-----TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           +++A+ LF KM+R+    +R   AC LS+CA    ++ G Q    + +  G         
Sbjct: 386 SEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGN 444

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            ++ + G+ G + EA +V   +  E +   W  ++    +HG   FG+     L E    
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG---FGKE-ALALFESMKM 499

Query: 498 NRRCDDV 504
             + DDV
Sbjct: 500 TIKPDDV 506



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 26/295 (8%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           SD++ WN  I  Y++ G  E A  +F   + ++T +YNAMISG+    +F+ ARK+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQ 314
            D+D I+W+ ++ GY K+G    A  +FN+M      P K V+S   +L+  A  G +++
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
              I D +    +  + +    L+  Y + GR++ A ++F+     E+ +WN ++GG   
Sbjct: 172 ARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
             R DDA  LF +M       D+I++  +++  A  G+       L+  ++++   P  +
Sbjct: 228 KKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGL-------LSEARRLFEELPIRD 276

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           V  +  +V    + G L EA  +   MP E N   W A++    +  ++E    L
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAREL 330



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 27/335 (8%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  Y   G    A  + +   +   + +NA+I GYL     + A+++F+   D++  S+N
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWN 126

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            M+SG+ + G    AR LFN+M +KD ++W+A++ G+ ++G+ +EA ++F++M    +  
Sbjct: 127 VMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVK 182

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            +   + +L+A    G ++    + D    + +  + V    L+  Y +  RLD A  +F
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA--CVLSACAHAGM 412
           + M +++  +WN MI G A +G   +A  LF ++      P R  FA   ++S     GM
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGM 292

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D   +    M +      EV     I   + ++  + +A E+   MP   N + W  ++
Sbjct: 293 LDEATRIFEEMPE----KNEVSWNAMIAGYV-QSQQIEKARELFDQMP-SRNTSSWNTMV 346

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507
               + G ++      KIL +  PQ R C   A M
Sbjct: 347 TGYAQCGNID----QAKILFDEMPQ-RDCISWAAM 376



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 18/230 (7%)

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           D D + W+  I  Y + G  + AL VFN M+R        ++S  L    S    D    
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYL----SNNKFDCARK 112

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           + + +       D +    ++  Y K G L  A  +F  M  K+V +WNAM+ G A +G 
Sbjct: 113 VFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
            ++A ++F +M    +  + I++  +LSA    G I+   +          +D E+  + 
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSK-----MDWEIVSWN 219

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           C++    R   L +A  +   MP+    + W  ++    ++G +    RL
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITGYAQNGLLSEARRL 268



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 8/214 (3%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N + A  +F+ + + +   W +++    +  +    + L+ +M       N+        
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           +C+   A + G Q+H  +VK G        ++ + MY   G + +A  + +D ++ D++ 
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK---DKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           WN +I GY + G  + A  LF+S K     +  +   ++S  +  G  ++  + FN M  
Sbjct: 474 WNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 533

Query: 259 KDEIT-----WSAIIDGYTKDGYYKEALEVFNEM 287
              IT     ++ +ID   + G   EAL +   M
Sbjct: 534 NYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM 567


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/640 (38%), Positives = 363/640 (56%), Gaps = 30/640 (4%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNV- 98
           +C  +   LKQ H  I K+G  Q       LV   A  +   + + A K F  + K +V 
Sbjct: 33  RCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAF-ELFKEDVR 91

Query: 99  -----FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
                F+ NS++R           I LY  M+ +   PN +T+P V   C+   A  EG+
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVH  VVK GL  DV +++  I  YA  G ++   ++ +  S+ +V+ W +LI GY +  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
             + A  LF    +K     NA++  + + G  + A++LF+E  D++ + ++ I+  Y +
Sbjct: 212 RPKEAVSLFFEMLNKVM--VNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYAR 269

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-----GALDQGIWIHDHVKRNSIC 328
            G  +EAL + +EM +   +P +  +   ++A A L     G +  G W+H ++++N I 
Sbjct: 270 QGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIP 329

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            D  L TALVDM+A+CG    A +VF  M  ++V  W A IG +AM G  + A  LF +M
Sbjct: 330 CDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQM 389

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             + ++PD + F  VL+AC+H G +++GL   + M+  +GI P++EHYGC+VDLLGRAG 
Sbjct: 390 LIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGL 448

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------- 499
           L EA ++I SMPMEPN  VW +LL ACR H  VE      + + E+ PQ           
Sbjct: 449 LREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNI 508

Query: 500 -----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                +  DVA++R  ++E+G++  PGSS + VNGVIHEF +GD SHP++  I LML+++
Sbjct: 509 YASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEM 568

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
             +    G+ P+ S VL D+DE+EKE     HSEKLAIAFG I T     IRV+KNLR+C
Sbjct: 569 NCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMC 628

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            DCHS  K+ S ++ R+IIVRD  R+H FR G CSC D+W
Sbjct: 629 SDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/629 (37%), Positives = 369/629 (58%), Gaps = 20/629 (3%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S   L+Q H  + +   F    V    +   + S  ++ + A+ +F      N +++N+
Sbjct: 53  NSTHKLRQIHGQLYRCNVFSSSRVVTQFIS--SCSSLNSVDYAISIFQRFELKNSYLFNA 110

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++R   E++     IS +  M+     P++ T+P V K+ +       G  +H  ++K G
Sbjct: 111 LIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFG 170

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS----DVICWNALIDGYLKCGDIEGAK 219
           L  D  V+ S + MY     +  A ++ D+  +S     V+ WN LI GY + GD+  A 
Sbjct: 171 LEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKAT 230

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           ELF S   K+TGS+N++I+GF + G    A++LF +M +K+ ++W+ +++G++++G  ++
Sbjct: 231 ELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEK 290

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           ALE F  M  +  +P  + +   L+ACA +GALD G+ IH+++  N   ++ V+GTALVD
Sbjct: 291 ALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVD 350

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG ++ A KVF + K K +  W+ MI G A+HG    A++ F  M+    +PD + 
Sbjct: 351 MYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVV 410

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC+H+G ++ GL+    M++ Y I+P ++HY  +VD+LGRAG L EA + I +M
Sbjct: 411 FLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAM 470

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P+ P+  VW AL  ACR H  VE  E   K LL++EP++               R DD  
Sbjct: 471 PITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAE 530

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R  M++ G   +PG S I+V+  +H F  GD +H +  EIY  L +I    + +GY+ 
Sbjct: 531 RVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTK 590

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
               VL +I+EEEKE A  YHSEKLA+AFG ++T PG T+R++KNLRVC DCHS  K  S
Sbjct: 591 EIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYAS 650

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+ KR+II+RD  R+HHF +G CSC D+W
Sbjct: 651 KMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/632 (37%), Positives = 347/632 (54%), Gaps = 62/632 (9%)

Query: 85   LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            LA   +  V K NV  WNSV+       +    +  +S +  +   P + ++P   K+CS
Sbjct: 1967 LATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCS 2026

Query: 145  ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                   G   H      G   D+ V S+ I MY+  G +  AR + D+    +V+ W +
Sbjct: 2027 ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTS 2086

Query: 205  LIDGYLKCGDIEGAKELFKSTKDKNT---------------------------------- 230
            +I GY++    + A  LFK   ++ T                                  
Sbjct: 2087 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 2146

Query: 231  -------------GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                         G  N ++  +A+ G+   ++K+F+ M +KD+I+W+++I  Y + G  
Sbjct: 2147 HGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 2206

Query: 278  KEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EALEVF+ M R   ++     LS VL ACA  GAL  G  IHD V +  +  +  +GT+
Sbjct: 2207 GEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTS 2266

Query: 337  LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
            ++DMY KCGR++MA K F+ MK K V +W AM+ G  MHGRA +A+++F+KM R  ++P+
Sbjct: 2267 IIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPN 2326

Query: 397  RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             ITF  VL+AC+HAG+++ G      M+  Y I+P +EHYGC+VDL GRAG L EA  +I
Sbjct: 2327 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLI 2386

Query: 457  SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
              M M+P+  VW +LLGACR H  V+ GE   + L E++P N               R  
Sbjct: 2387 KRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWA 2446

Query: 503  DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
            DV +MR LMK R +   PG S++++ G +H F  GD  HP  + IY  L+K+  +L+  G
Sbjct: 2447 DVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIG 2506

Query: 563  YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
            Y PN + VL D+DEEEKE   + HSEKLA+AFG +N+ PG TI +IKNLRVC DCH+  K
Sbjct: 2507 YVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIK 2566

Query: 623  LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            LISK+  RD +VRD  R+HHF++G CSC D+W
Sbjct: 2567 LISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 229/436 (52%), Gaps = 40/436 (9%)

Query: 21  ATNIPTSEF----SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           + NIP +      ++K +  + N K   +++HL+Q HA I++SG   D  ++  L+  H 
Sbjct: 14  SKNIPLTPRGNIRAKKALFLLQNCK---NFKHLRQIHAKIIRSGLSNDQLLTRKLI--HL 68

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S       A+ +F  +  P  F WN ++RA   +    + + LY  MV      +KFT+
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTF 128

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           P V KAC+   +   G  VH  ++K G  GDV V+                         
Sbjct: 129 PFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ------------------------- 163

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
                 N LID Y KCG    A ++F+  + +N  S+  +ISG    G  +EAR++F+E+
Sbjct: 164 ------NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             K+ ++W+A+I+GY ++   +EALE+F  MQ + I P ++ +  ++ AC  +G L  G 
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGR 277

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IHD+  +N I +   LGTAL+DMY+KCG +  A +VFE M  K + TWN+MI  L +HG
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHG 337

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +A+ LF +M+R  ++PD ITF  VL AC H   +  G    T M Q YGI P  EHY
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 437 GCIVDLLGRAGYLAEA 452
            C+ +L  R+  L EA
Sbjct: 398 ECMTELYARSNNLDEA 413



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 36/301 (11%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  ++  GR   A  LF ++ +    TW+ II   T +G  ++AL ++  M    I   
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           KF    V+ AC +  ++D G  +H  + +     D  +   L+D Y KCG    A KVFE
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 356 DMKM-------------------------------KEVFTWNAMIGGLAMHGRADDAIEL 384
            M++                               K V +W AMI G   + + ++A+EL
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +MQ E + P+  T   ++ AC   G++  G     Y  +   I+  V     ++D+  
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN-CIEIGVYLGTALIDMYS 303

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           + G + +A EV  +MP + +   W +++ +   HG    G+    +  EME  N + D +
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSEMERVNVKPDAI 359

Query: 505 A 505
            
Sbjct: 360 T 360



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 18/261 (6%)

Query: 232  SYNAMISGFARFGRFEEAR--KLFNEMNDKDEI-TWSAIIDGYTKDGYYKEALEVFNEMQ 288
            +YN+++ G    GR + +     F +  DK  + +W+++I    + G   EAL  F+ ++
Sbjct: 1949 TYNSILFGVPS-GREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR 2007

Query: 289  RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            +  + P +    C + +C++L  L  G   H          D  + +AL+DMY+KCG+L 
Sbjct: 2008 KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLK 2067

Query: 349  MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP--------DRITF 400
             A  +F+++ ++ V +W +MI G   + +AD+A+ LF     E+           D +  
Sbjct: 2068 DARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVM 2127

Query: 401  ACVLSACAHAG--MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
              VLSAC+      I  G+      +   G D  +     ++D   + G    +++V   
Sbjct: 2128 VSVLSACSRVSGKGITEGVHGFVVKK---GFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW 2184

Query: 459  MPMEPNAAVWEALLGACRKHG 479
            M  E +   W +++    + G
Sbjct: 2185 ME-EKDDISWNSMIAVYAQSG 2204



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 138/327 (42%), Gaps = 38/327 (11%)

Query: 52   AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
             H  ++K G      V  TL+  +A  +     ++ KVF+ + + +   WNS++    + 
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYA--KCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 2203

Query: 112  NEPWRVISLYSEMVG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                  + ++  MV  V  + N  T   V  AC+   A + G  +H  V+K  L  +V V
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 171  KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTK 226
             +S I MY   G V  A++  D   + +V  W A++ GY   G  + A ++F    ++  
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 227  DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEAL 281
              N  ++ ++++  +  G  EE    FN M  K +I      +  ++D + + G   EA 
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEA- 2382

Query: 282  EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------- 334
              +N ++R K+KP   V   +L AC           IH +V    I    +         
Sbjct: 2383 --YNLIKRMKMKPDFVVWGSLLGACR----------IHKNVDLGEIAAQKLFELDPDNCG 2430

Query: 335  --TALVDMYAKCGRLDMAWKVFEDMKM 359
                L ++YA  GR    W   E M+M
Sbjct: 2431 YYVLLSNLYADAGR----WADVERMRM 2453



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 7/199 (3%)

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           R  I+ +K +   +L  C +   L Q   IH  + R+ +  D +L   L+ +Y+  GR+ 
Sbjct: 22  RGNIRAKKALF--LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIA 76

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  +F  ++    FTWN +I    ++G ++ A+ L+  M  + +  D+ TF  V+ AC 
Sbjct: 77  YAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACT 136

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           +   ID G      + + YG   +V     ++D   + G+   A +V   M +  N   W
Sbjct: 137 NFLSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSW 194

Query: 469 EALLGACRKHGEVEFGERL 487
             ++      G+++   R+
Sbjct: 195 TTVISGLISCGDLQEARRI 213


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/689 (34%), Positives = 374/689 (54%), Gaps = 57/689 (8%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           +S   +P+S    + I  +++    +++ HLKQ H  ++      D ++   L+K     
Sbjct: 1   MSIVTVPSSTSKVQQIKTLISVA--STFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFF 58

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R +++   L  F+    PN+F++N+++   + ++     + L+  +       + FT+P 
Sbjct: 59  RQTHYSFLL--FSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPL 116

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+     K G+ +H+ VVK G   DV   +S + +Y+  G +N A ++ ++  +  
Sbjct: 117 VLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERS 176

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKD------------------------------- 227
           V+ W AL  GY   G    A +LFK   +                               
Sbjct: 177 VVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 228 --------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                   KN+     +++ +A+ G+ E+AR +F+ M +KD +TWS +I GY  + + KE
Sbjct: 237 HMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKE 296

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            +E F +M ++ +KP +F +   L++CASLGALD G W    + R+    +  +  AL+D
Sbjct: 297 GIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG +   ++VF++MK K++   NA I GLA +G    +  +F + ++  + PD  T
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L  C HAG+I  GL+    +  +Y +   VEHYGC+VDL GRAG L +A  +I  M
Sbjct: 417 FLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM 476

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           PM PNA VW ALL  CR   + +  E + K L+ +EP N               R D+ A
Sbjct: 477 PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAA 536

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R +M  +G+K  PG S I++ G +HEF   D SHP   +IY  L+ +  ++++ G+ P
Sbjct: 537 EVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP 596

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +  V FD+++EEKE    +HSEKLA+AFG I+TD G  IRV+KNLRVC DCH   KLIS
Sbjct: 597 TTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLIS 656

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+ +R+I+VRD  R+H F NG CSCND+W
Sbjct: 657 KITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 351/609 (57%), Gaps = 40/609 (6%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNE------------PWRVISLYSEMVGVDSKP 131
           E A K+F+ +   N   WN +L A +++               W ++S    M G   K 
Sbjct: 170 EEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKK 229

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG------------DVHVKSSGIQMYA 179
                 ++F    + +     + +  +  +NGL              DV   ++ +  + 
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYA-QNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 180 CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239
             G +++A +I ++  + + + WNA+I GY++   IE A+ELF     +NT S+N M++G
Sbjct: 289 QNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G  ++A+ LF+EM  +D I+W+A+I GY + G  +EAL +F +M+RD     +  L
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           +C L++CA + AL+ G  +H  + +       + G AL+ MY KCG ++ A+ VFED+  
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K++ +WN MI G A HG   +A+ LF  M +  ++PD +T   VLSAC+H G +D+G++ 
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEY 527

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M Q YGI    +HY C++DLLGRAG L EA  ++ SMP  P+AA W ALLGA R HG
Sbjct: 528 FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587

Query: 480 EVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMI 525
           + E GE+  + + EMEP N               R  +V +MR  M+++G+K  PG S +
Sbjct: 588 DTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           ++    H F  GD SHP+ + IY  L+++  +LK +G+  ++  VL D++EEEKE   KY
Sbjct: 648 EIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKY 707

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEKLA+AFG ++  PG  IRVIKNLRVCEDCH+A K ISK+ +R IIVRD  R+HHF  
Sbjct: 708 HSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSE 767

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 768 GSCSCGDYW 776



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 200/427 (46%), Gaps = 32/427 (7%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           F+ A KVF  +   ++  WN +L   +++       +L+++M   D            + 
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 143 CSITEADK--EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             + EA K  + + V   +  NGL          +  Y   G +  AR++ D     +++
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGL----------LSAYVQNGRIEDARRLFDSKMDWEIV 216

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
            WN L+ GY++   ++ A+ LF     ++  S+N MI+G+A+ G   EAR+LF E+  +D
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQGIWI 318
              W+A++ G+ ++G   EA  +F EM      P K  +S   ++A       +++   +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEM------PEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 319 HDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
            D +  RN+   +      +V  YA+CG +D A  +F++M  ++  +W AMI G A  G+
Sbjct: 331 FDQMPSRNTSSWN-----TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           +++A+ LF KM+R+    +R   AC LS+CA    ++ G Q    + +  G         
Sbjct: 386 SEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGN 444

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            ++ + G+ G + EA +V   +  E +   W  ++    +HG   FG+     L E    
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHG---FGKE-ALALFESMKM 499

Query: 498 NRRCDDV 504
             + DDV
Sbjct: 500 TIKPDDV 506



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 26/295 (8%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           SD++ WN  I  Y++ G  E A  +F   + ++T +YNAMISG+    +F+ ARK+F +M
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQ 314
            D+D I+W+ ++ GY K+G    A  +FN+M      P K V+S   +L+  A  G +++
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM------PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
              I D +    +  + +    L+  Y + GR++ A ++F+     E+ +WN ++GG   
Sbjct: 172 ARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
             R DDA  LF +M       D+I++  +++  A  G+       L+  ++++   P  +
Sbjct: 228 KKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGL-------LSEARRLFEELPIRD 276

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           V  +  +V    + G L EA  +   MP E N   W A++    +  ++E    L
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKAREL 330



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 27/335 (8%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  Y   G    A  + +   +   + +NA+I GYL     + A+++F+   D++  S+N
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWN 126

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            M+SG+ + G    AR LFN+M +KD ++W+A++ G+ ++G+ +EA ++F++M    +  
Sbjct: 127 VMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVK 182

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            +   + +L+A    G ++    + D    + +  + V    L+  Y +  RLD A  +F
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA--CVLSACAHAGM 412
           + M +++  +WN MI G A +G   +A  LF ++      P R  FA   ++S     GM
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGM 292

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D   +    M +      EV     I   + ++  + +A E+   MP   N + W  ++
Sbjct: 293 LDEATRIFEEMPE----KNEVSWNAMIAGYV-QSQQIEKARELFDQMP-SRNTSSWNTMV 346

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507
               + G ++      KIL +  PQ R C   A M
Sbjct: 347 TGYAQCGNID----QAKILFDEMPQ-RDCISWAAM 376



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 128/343 (37%), Gaps = 79/343 (23%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           T+V  +A     N + A  +F+ + + +   W +++    +  +    + L+ +M     
Sbjct: 344 TMVTGYAQC--GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
             N+        +C+   A + G Q+H  +VK G        ++ + MY   G + +A  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           + +D ++ D++ WN +I GY                               AR G  +EA
Sbjct: 462 VFEDITEKDIVSWNTMIAGY-------------------------------ARHGFGKEA 490

Query: 250 RKLFNEMN---DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             LF  M      D++T   ++   +  G+  + +E FN M ++                
Sbjct: 491 LALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNY--------------- 535

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTW 365
                               I  +A   T ++D+  + GRLD A  + + M    +  TW
Sbjct: 536 -------------------GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATW 576

Query: 366 NAMIGGLAMHGR---ADDAIELFFKMQREKMRPDRITFACVLS 405
            A++G   +HG     + A E  F+M+     PD      +LS
Sbjct: 577 GALLGASRIHGDTELGEKAAEKVFEME-----PDNSGMYVLLS 614



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 18/230 (7%)

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           D D + W+  I  Y + G  + AL VFN M+R        ++S  L    S    D    
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYL----SNNKFDCARK 112

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           + + +       D +    ++  Y K G L  A  +F  M  K+V +WNAM+ G A +G 
Sbjct: 113 VFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
            ++A ++F +M    +  + I++  +LSA    G I+   +          +D E+  + 
Sbjct: 169 VEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFD-----SKMDWEIVSWN 219

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           C++    R   L +A  +   MP+    + W  ++    ++G +    RL
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITGYAQNGLLSEARRL 268


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 383/727 (52%), Gaps = 93/727 (12%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           E +   NI  +  +  +IL   N   ++  +  ++ H V+  SG   D  V+  L+  + 
Sbjct: 168 ERMKDANIEPNRITFLSILKACNN--YSMLEKAREIHTVVKASGMETDVAVATALITMY- 224

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S+     LA ++F  + + NV  W ++++A  +H +      LY +M+     PN  T+
Sbjct: 225 -SKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTF 283

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++  +C+  EA   G ++H+H+ + GL  DV V ++ I MY    C+  AR+  D  SK
Sbjct: 284 VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSK 343

Query: 197 SDVICWNALIDGYLKCG--DIEGAKELFKSTK---------------------------- 226
            DVI W+A+I GY + G  D E   E+F+  +                            
Sbjct: 344 RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALE 403

Query: 227 --------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI----- 267
                         + +     A+ + +A+ G   EA ++F++M +K+ + W+++     
Sbjct: 404 QGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYI 463

Query: 268 --------------------------IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                                     I GY + G   +  E+ + M+ +  +P +  +  
Sbjct: 464 KCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIIS 523

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L AC +L AL++G  +H    +  +  D V+ T+L+ MY+KCG +  A  VF+ +  ++
Sbjct: 524 ILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRD 583

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
              WNAM+ G   HG   +A++LF +M +E++ P+ ITF  V+SAC  AG++  G +   
Sbjct: 584 TVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFR 643

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            MQ+ + + P  +HYGC+VDLLGRAG L EAEE I  MP EP+ +VW ALLGAC+ H  V
Sbjct: 644 IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNV 703

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  E     +L +EP N               R DD  K+RK+M ++G+K + G S I++
Sbjct: 704 QLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEI 763

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           +G IH F   D +HP++  I+  L+ + +++K  GY+P+   VL D+DE +KE A  +HS
Sbjct: 764 DGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHS 823

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIA+G + T PG  IR++KNLRVC DCH+ATK ISK+ KR+I+ RD  R+H+F+NG 
Sbjct: 824 EKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGT 883

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 884 CSCGDFW 890



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 233/526 (44%), Gaps = 82/526 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  + + G   D Y+  +L+  +  S+F +     +VF  +   +V  W+S++ A  
Sbjct: 98  KMVHKQLDELGLAIDIYLGNSLINFY--SKFGDVASVEQVFRRMTLRDVVTWSSMIAAYA 155

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +N P +    +  M   + +PN+ T+ ++ KAC+     ++  ++H  V  +G+  DV 
Sbjct: 156 GNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVA 215

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK------ 223
           V ++ I MY+  G ++ A +I     + +V+ W A+I    +   +  A EL++      
Sbjct: 216 VATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAG 275

Query: 224 ----------------STKDKNTGSY-----------------NAMISGFARFGRFEEAR 250
                           + +  N G                   NA+I+ + +    ++AR
Sbjct: 276 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDAR 335

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYY-KEAL-EVFN---EMQRDKIKPRKFVLSCVLAA 305
           + F+ M+ +D I+WSA+I GY + GY  KE+L EVF     M+R+ + P K     +L A
Sbjct: 336 ETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKA 395

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL--------------DMAW 351
           C+  GAL+QG  IH  + +     D  L TA+ +MYAKCG +               +AW
Sbjct: 396 CSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAW 455

Query: 352 -----------------KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
                            KVF +M  + V +WN MI G A  G      EL   M+ E  +
Sbjct: 456 ASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ 515

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           PDR+T   +L AC     ++RG   L + + +  G++ +      ++ +  + G + EA 
Sbjct: 516 PDRVTIISILEACGALSALERG--KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEAR 573

Query: 454 EVISSMPMEPNAAVWEALLGACRKHG-EVEFGERLGKILLEMEPQN 498
            V   +      A W A+L    +HG   E  +   ++L E  P N
Sbjct: 574 TVFDKISNRDTVA-WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPN 618



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 213/478 (44%), Gaps = 65/478 (13%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N  TY  + + C+     ++G  VH  + + GL  D+++ +S I  Y+ FG V    Q+ 
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN---------------------- 229
              +  DV+ W+++I  Y        A + F+  KD N                      
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196

Query: 230 -----------------TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                 A+I+ +++ G    A ++F +M +++ ++W+AII    
Sbjct: 197 KAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           +     EA E++ +M +  I P       +L +C +  AL++G  IH H+    +  D V
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG-----RADDAIELFFK 387
           +  AL+ MY KC  +  A + F+ M  ++V +W+AMI G A  G       D+  +L  +
Sbjct: 317 VANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLER 376

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+RE + P+++TF  +L AC+  G +++G Q    + ++ G + +      I ++  + G
Sbjct: 377 MRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCG 435

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------- 498
            + EAE+V S M    N   W +LL    K G++   E   K+  EM  +N         
Sbjct: 436 SIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAE---KVFSEMSTRNVVSWNLMIA 491

Query: 499 --RRCDDVAKMRKL---MKERGIKTNPGS--SMIDVNGVIHEFRTGDGSHPQVKEIYL 549
              +  D+AK+ +L   MK  G + +  +  S+++  G +     G   H +  ++ L
Sbjct: 492 GYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGL 549



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           K G  KEA+++   +++  +        C++  CA L   + G  +H  +    + +D  
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           LG +L++ Y+K G +    +VF  M +++V TW++MI   A +     A + F +M+   
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P+RITF  +L AC +  M+++  +  T ++   G++ +V     ++ +  + G ++ A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKA-SGMETDVAVATALITMYSKCGEISLA 233

Query: 453 EEVISSMPMEPNAAVWEALLGACRKH 478
            E+   M  E N   W A++ A  +H
Sbjct: 234 CEIFQKMK-ERNVVSWTAIIQANAQH 258


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/652 (36%), Positives = 372/652 (57%), Gaps = 75/652 (11%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P +       L  L  KC+ ++  LKQ H  I+ +G     Y    L+K   +S+F N  
Sbjct: 142 PKNHIFNHPTLQTLQQKCN-NFNTLKQIHTQIITTGLSFQTYCLSHLIK--ISSKF-NLP 197

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEH---NEPWRVISLYSEMV-GVDSKPNKFTYPTVF 140
            A K+FN +  P +F++N+++ + +     N+     SLY++++   + +PN FT+P++F
Sbjct: 198 YAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLF 257

Query: 141 KACSITEA-DKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           KAC   ++    G  +H HV+K      D  V++S +  YA +G +  +R I D  ++ D
Sbjct: 258 KACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPD 317

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           +  WN +++ Y +          F                                  +D
Sbjct: 318 LATWNVILNAYARSSSYHSYSNSF----------------------------------DD 343

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
            D               +  E+L +F +MQ   I+P +  +  +++AC++LGA+ QG W+
Sbjct: 344 AD---------------FSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWV 388

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHG 376
           H  V RN I ++  +GTA VDMY+KCG L++A +VF+ M    ++ F + AMIGG A+HG
Sbjct: 389 HCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHG 448

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
             + A+EL+ KM+ + + PD  TF   + AC+H G+++ GL+    M++++G++P++EHY
Sbjct: 449 YGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHY 508

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC++DLLGRAG L EAEE ++ MPM+PNA +W +LLGA R HG +  GE     L+E+EP
Sbjct: 509 GCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEP 568

Query: 497 QNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
           +                R +DV ++RKLMK  G+   PG S++++ G +HEF TGD SHP
Sbjct: 569 ETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHP 628

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
             KEIYL + +I  +L+  G+   +S+ LFD++EE+KE    YHSE+LAIAF  I +   
Sbjct: 629 FSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSS 688

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             IR+IKNLRVC DCH+ TKLIS  + R+IIVRDR R+HHF++G CSC D+W
Sbjct: 689 LAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/721 (35%), Positives = 384/721 (53%), Gaps = 95/721 (13%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P +  +  TIL+ L+  C  S  H+KQ HA IL++    +H ++  L     +S   N  
Sbjct: 6   PIASTAANTILEKLSF-C-KSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSSSSINLS 61

Query: 85  LALKVFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
            AL VF+S+   P   V+N  LR     +EP   I  Y  +  V  + ++F++  + KA 
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 144 SITEADKEGVQVHA----------HVVKNGL------CG---------------DVHVKS 172
           S   A  EG+++H             V+ G       CG               DV   +
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVI-------------------------------- 200
           + I+ Y  FG V++A ++ ++   S+V+                                
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241

Query: 201 -------CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
                     AL+  Y   G ++ A+E F+    +N     AM+SG+++ GR ++A+ +F
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           ++   KD + W+ +I  Y +  Y +EAL VF EM    IKP    +  V++ACA+LG LD
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +  W+H  +  N +  +  +  AL++MYAKCG LD    VFE M  + V +W++MI  L+
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHG A DA+ LF +M++E + P+ +TF  VL  C+H+G+++ G +    M   Y I P++
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHYGC+VDL GRA  L EA EVI SMP+  N  +W +L+ ACR HGE+E G+   K +LE
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 494 MEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EP              + +R +DV  +R++M+E+ +    G S ID NG  HEF  GD 
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN- 598
            H Q  EIY  L +++ KLK+ GY P+   VL D++EEEK+    +HSEKLA+ FG +N 
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNE 661

Query: 599 -----TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
                 D    IR++KNLRVCEDCH   KL+SKV++R+IIVRDR R+H ++NG CSC D+
Sbjct: 662 EKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721

Query: 654 W 654
           W
Sbjct: 722 W 722


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 352/623 (56%), Gaps = 63/623 (10%)

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           + +V+ WNS++       +    +  +S M  +D KPN+ T+P   K+CS       G Q
Sbjct: 44  RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQ 103

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
            H   +  G   D+ V S+ I MY+  G ++ AR + D+  + +++ W +LI GY++  D
Sbjct: 104 AHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDD 163

Query: 215 IEGAKELFK---------------------------------STK--------------- 226
              A  +FK                                 S K               
Sbjct: 164 AHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGL 223

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           DK  G  N ++  +A+ G    +RK+F++M +KD ++W+++I  Y ++G   +A EVF+ 
Sbjct: 224 DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHG 283

Query: 287 MQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M +    K  +  LS +L ACA  GAL  G+ +HD V +     + ++ T+++DMY KCG
Sbjct: 284 MLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCG 343

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           + +MA   F+ MK K V +W AMI G  MHG A +A+++F++M    ++P+ ITF  VL+
Sbjct: 344 QAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLA 403

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG ++ G +    M   Y ++P VEHYGC+VDLLGRAGY+ EA  +I SM +  + 
Sbjct: 404 ACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDF 463

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            +W +LL ACR H +VE  E   + L +++P N               R  DV +MR L+
Sbjct: 464 VLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILV 523

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K+RG+   PG S++++ G +H F  GD  HPQ ++IY  L+++  KL+  GY PN + VL
Sbjct: 524 KDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVL 583

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D+DEEEKE   + HSEKLA+AFG +N+ PG+TI VIKNLRVC DCH+  KLISK+  R+
Sbjct: 584 HDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSRE 643

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD  R+HHF++G CSC D+W
Sbjct: 644 IIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 165/378 (43%), Gaps = 55/378 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           KQAH   L  G   D +VS  L+  ++   + SN   A  +F+ + + N+  W S++   
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSN---ARVLFDEIPRRNIVTWTSLITGY 158

Query: 109 LEHNEPWRVISLYSEMVGVDSKPN---------KFTYPTVFKACSITEADKEGVQVHAHV 159
           +++++    + ++ E +   S+ N              +V  ACS          VH   
Sbjct: 159 VQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVA 218

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +K GL   + V+++ +  YA  G V+ +R++ DD ++ DV+ WN++I  Y + G    A 
Sbjct: 219 IKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAF 278

Query: 220 ELFKSTKDKNTGSYN----------------------------------------AMISG 239
           E+F        G YN                                        ++I  
Sbjct: 279 EVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDM 338

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G+ E AR  F+ M +K+  +W+A+I GY   G+ +EAL+VF +M    +KP     
Sbjct: 339 YCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITF 398

Query: 300 SCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
             VLAAC+  G L++G  W +      ++         +VD+  + G +  A+ + + MK
Sbjct: 399 ISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMK 458

Query: 359 MKEVFT-WNAMIGGLAMH 375
           ++  F  W +++    +H
Sbjct: 459 VRRDFVLWGSLLAACRIH 476



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 16/240 (6%)

Query: 252 LFNEMNDKDEI-TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           LFN+  D+ ++ +W+++I    + G   E+L  F+ M++  IKP +    C + +C++L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L+ G   H          D  + +AL+DMY+KCG+L  A  +F+++  + + TW ++I 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 371 GLAMHGRADDAIELFFKMQREK---------MRPDRITFACVLSACAHAG--MIDRGLQA 419
           G   +  A +A+ +F +   EK            D +    VLSAC+      +  G+  
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +       G+D  +     ++D   + G ++ + +V   M  E +   W +++    ++G
Sbjct: 217 VAI---KVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMA-EKDVVSWNSMIAVYAQNG 272



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 40/327 (12%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H V +K G  +   V  TL+  +A  +     L+ KVF+ + + +V  WNS++    ++ 
Sbjct: 215 HGVAIKVGLDKVMGVENTLLDAYA--KCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNG 272

Query: 113 EPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                  ++  M+     K N+ T  T+  AC+   A + G+ +H  V+K G   +V + 
Sbjct: 273 LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA 332

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKD 227
           +S I MY   G    AR   D   + +V  W A+I GY   G    A ++F     +   
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
            N  ++ ++++  +  G  EE  + FN M+ +  +      +  ++D   + GY KEA  
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEA-- 450

Query: 283 VFNEMQRDKIKPRKFVL-SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------- 334
            +N ++  K++ R FVL   +LAAC           IH  V+   I    +         
Sbjct: 451 -YNLIKSMKVR-RDFVLWGSLLAACR----------IHKDVELAEISARELFKLDPSNCG 498

Query: 335 --TALVDMYAKCGRLDMAWKVFEDMKM 359
               L ++YA  GR    WK  E M++
Sbjct: 499 YYVLLANIYADAGR----WKDVERMRI 521


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/481 (44%), Positives = 316/481 (65%), Gaps = 19/481 (3%)

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEE 248
           D  + D +   +L+    + G++E  K L   +K    D+N    NA++  + +    E 
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A+++FN + +KD ++W++++ G  K GY++E+L +F +MQ  KI+P +  L  VL+ACA 
Sbjct: 65  AQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQ 124

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            GALDQG +IH  + +  I  D VL TALVDMYAKCG +D+A +VF  M+++ VFTWNAM
Sbjct: 125 TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAM 184

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLAMHG  +DAI LF +M+ +K+ PD +TF  +L AC+HAG++D GL     M+  + 
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQ 244

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P +EHYGC+VDLL RA  + +A   I +MP++ N+ +W  LLGACR  G  +  E++ 
Sbjct: 245 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIX 304

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + ++E+EP +               + D   K+RK MK +GI+  PG S I++NG+IH+F
Sbjct: 305 RRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 364

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
             GD SH Q ++IY M++++  ++ ++ G+ P ++ VLFDI+EEEKE +   HSEKLAIA
Sbjct: 365 VAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIA 424

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
            G I+T  G+ IR++KNLRVC DCHS  K+ SKV+ R+I+ RDR R+HHF+ G CSC DF
Sbjct: 425 LGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDF 484

Query: 654 W 654
           W
Sbjct: 485 W 485



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 130/294 (44%), Gaps = 43/294 (14%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P++ T  ++  AC+     + G  +H++  + GL  ++ V ++ + MY     +  A++
Sbjct: 8   RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----------------------STKD 227
           + +   + DV+ W +++ G  K G  + +  LF+                       T  
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGA 127

Query: 228 KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
            + G Y                  A++  +A+ G  + A ++F  M  ++  TW+A+I G
Sbjct: 128 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGG 187

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
               G+ ++A+ +F++M+ DK+ P       +L AC+  G +D+G+ +   +K N   ++
Sbjct: 188 LAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK-NKFQIE 246

Query: 331 AVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDA 381
             +     +VD+  +  ++D A    E+M +K     W  ++G     G  D A
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 300



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 144/336 (42%), Gaps = 33/336 (9%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E A +VFN + + +V  W S+L    +       ++L+ +M     +P++ T   V  
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+ T A  +G  +H  + K  +  D+ ++++ + MYA  G ++ A Q+       +V  
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 180

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK-DK---NTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WNA+I G    G  E A  LF   + DK   +  ++ A++   +  G  +E   +F  M 
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           +K +I      +  ++D   +     +AL     M    IK    + + +L AC S G  
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM---PIKANSVLWATLLGACRSGGHF 297

Query: 313 DQGIWIHDHVKRNSI------CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV---- 362
           D    + + + R  I      C   V+   L ++YA   + D A K+ + MK K +    
Sbjct: 298 D----LAEKIXRRVIELEPDSCGRYVM---LSNLYAGVSQWDHALKLRKQMKNKGIEKTP 350

Query: 363 -FTW---NAMIGGLAMHGRADDAIELFFKMQREKMR 394
             +W   N MI       R+    E  + M  E  R
Sbjct: 351 GCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 386



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 41/264 (15%)

Query: 12  HHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTL 71
           H ++P+EI+   +  S  +Q   LD             K  H +I K     D  +   L
Sbjct: 106 HKIEPDEITLVGV-LSACAQTGALD-----------QGKYIHLLIDKFEINCDLVLETAL 153

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           V  +A  +  + +LAL+VF  +   NVF WN+++     H      ISL+ +M      P
Sbjct: 154 VDMYA--KCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMP 211

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS-----GIQMYAC-FGCVN 185
           +  T+  +  ACS           HA +V  GL     +K+       ++ Y C    + 
Sbjct: 212 DDVTFIALLCACS-----------HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLC 260

Query: 186 KARQILDDGS-------KSDVICWNALIDGYLKCGDIEGAKELFKST---KDKNTGSYNA 235
           +AR++ D  +       K++ + W  L+      G  + A+++ +     +  + G Y  
Sbjct: 261 RARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVM 320

Query: 236 MISGFARFGRFEEARKLFNEMNDK 259
           + + +A   +++ A KL  +M +K
Sbjct: 321 LSNLYAGVSQWDHALKLRKQMKNK 344


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/466 (45%), Positives = 309/466 (66%), Gaps = 15/466 (3%)

Query: 204 ALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           ALID Y KCGD   A+E+F +  + +    +NAMI G+ + G  + AR LF++M D D I
Sbjct: 277 ALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVI 336

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           T++++I GY   G  +EAL +F +M+R  +    F +  +L A ASLGAL QG  +H  +
Sbjct: 337 TFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACI 396

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           ++  +  D  LGTAL+DMY KCGR++ A   F+ M +++V TW+AMIGGLA +G    A+
Sbjct: 397 EQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAAL 456

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           E FF M+ +    + +T+  VL+AC+H+ ++D G      M+ ++ I P++EHYGC++DL
Sbjct: 457 EHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDL 516

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------ 496
           LGR+G L EA +++ +MPM+PNA +W ++L ACR H  V+  +     LL++EP      
Sbjct: 517 LGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVY 576

Query: 497 --------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                    +R+ +D +K+R+LM++RG+K   G S I V G +H+F  GD SHPQ+ EI 
Sbjct: 577 VQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIV 636

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
           +M+++I  +LK  GYSP +SQ+  D+DEEEKE A   HSEKLAIAFG ++  P   + +I
Sbjct: 637 VMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHII 696

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLRVCEDCHSA KLIS+++ R+IIVRDR R+HHFR G CSCNDFW
Sbjct: 697 KNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 214/488 (43%), Gaps = 80/488 (16%)

Query: 45  SWQHLKQAHAVILKSGHF----QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           S +   + HA++  SG         ++  +L  C + S   +   AL +F+ +   + F+
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRM-PCSTFL 69

Query: 101 WNSVLRACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD-KEGVQVHAH 158
           +++ LRAC   +  P R I LY  M GVD  P+ FT+  +FK C+   A    G  +HA 
Sbjct: 70  FDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAA 129

Query: 159 VVKNGLCGDVH-VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
             +  L   V  + S  I MYA  G    AR+  D+ S  DV+ W  +I           
Sbjct: 130 CFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVI----------- 178

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                               SG A+ G  ++AR+L      ++ +TW+ +I GY++ G  
Sbjct: 179 --------------------SGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRA 218

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            EA++ FN M  D I P +  +  +L+AC  L  L+ G  +H  V    + +   L  AL
Sbjct: 219 AEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVAL 278

Query: 338 VDMYAKC--------------------------------GRLDMAWKVFEDMKMKEVFTW 365
           +DMYAKC                                G +D+A  +F+ M+  +V T+
Sbjct: 279 IDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITF 338

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           N++I G    GR  +A+ LF KM+R  +  D  T   +L+A A  G + +G +AL    +
Sbjct: 339 NSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQG-RALHACIE 397

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
              ++ +V     ++D+  + G + EA      M +  +   W A++G    +G      
Sbjct: 398 QRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMIGGLAFNG------ 450

Query: 486 RLGKILLE 493
            +GK  LE
Sbjct: 451 -MGKAALE 457



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +  + ++A  +F+ +   +V  +NS++   +        + L+++M       + FT   
Sbjct: 316 KVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVG 375

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  A +   A  +G  +HA + +  +  DV++ ++ + MY   G V +A       S  D
Sbjct: 376 LLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRD 435

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  W+A+I G    G  + A E F   K      N+ +Y A+++  +     +E R  F+
Sbjct: 436 VHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFD 495

Query: 255 EM----NDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EM    N + +I  +  +ID   + G   EA+++   M    ++P   + + +L+AC
Sbjct: 496 EMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTM---PMQPNAVIWASILSAC 549


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 357/659 (54%), Gaps = 56/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+ H   L+     D  V+  L+  +A  +    E A ++F  +   ++  W++++ A +
Sbjct: 349  KEIHGCALQQRIDSDILVATPLMVMYA--KCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +   P   +SL+ EM     KPN+ T  ++  AC+     K G  +H   VK  +  D+ 
Sbjct: 407  QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
              ++ + MYA  G    A    +  S  D++ WN+LI+GY + GD   A ++F   +   
Sbjct: 467  TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 227  -------------------DKNTGS-----------------YNAMISGFARFGRFEEAR 250
                               D + G+                  NA+I  +A+ G    A 
Sbjct: 527  INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 251  KLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             LFN+ +  KDE+TW+ II  Y ++G+ KEA+  F++M+ +   P       VL A A L
Sbjct: 587  FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL 646

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             A  +G+  H  + +     + ++G +L+DMYAKCG+L  + K+F +M  K+  +WNAM+
Sbjct: 647  AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAML 706

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
             G A+HG  D AI LF  MQ  +++ D ++F  VLSAC H G+++ G +    M   Y I
Sbjct: 707  SGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHI 766

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             P++EHY C+VDLLGRAG   E    I  MP+EP+A VW ALLG+CR H  V+ GE    
Sbjct: 767  KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 490  ILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             L+++EP+N               R  D  K R  M + G+K  PG S +++   +H FR
Sbjct: 827  HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFR 886

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD SHPQ++ ++L+   ++EK++  GY P+ S VL +++EE+KE     HSE+LAI F 
Sbjct: 887  VGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFA 946

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +NT PG+TI+++KNLRVC DCH+ TK ISK+  R IIVRD  R+HHF +G CSCND+W
Sbjct: 947  LLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 246/509 (48%), Gaps = 55/509 (10%)

Query: 20  SATNIPT--SEF---SQKTILDILN-TKCHTSWQHLK---QAHAVILKSGHFQDHYVSGT 70
           S T+I T  SEF   S  T  + L+  +  +S +HL    Q HA I+ SG F+ H+    
Sbjct: 10  SFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHHHSITH 68

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +  S F   +LA  VF+S   P+  +WNS++RA     +    + +Y  MV    +
Sbjct: 69  LINLY--SLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+K+T+  V KAC+     +EGV  H  + + GL  DV + +  + MY+  G + +AR++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST------------------------- 225
            D   K DV+ WNA+I G  +  D   A + F+S                          
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 226 ------------KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                       +D ++   N +I  +++ G  + AR++F++M D+D+++W  ++ GY  
Sbjct: 247 ELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G + E LE+F++M+   ++  K        A A    L++G  IH    +  I  D ++
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            T L+ MYAKCG  + A ++F  ++ +++  W+A+I  L   G  ++A+ LF +MQ +KM
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 394 RPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           +P+R+T   +L ACA   ++  G  +   T    M   D ++     +V +  + G+   
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM---DSDLSTGTALVSMYAKCGFFTA 483

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGE 480
           A    + M    +   W +L+    + G+
Sbjct: 484 ALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 209/470 (44%), Gaps = 46/470 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  I + G  +D ++   LV  +  S+  + + A +VF+ + K +V  WN+++    +  
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMY--SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +P   +  +  M  V  +P+  +   +F         +    +H +V +      V   S
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV---S 266

Query: 173 SG-IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------------ 213
           +G I +Y+  G V+ AR++ D     D + W  ++ GY   G                  
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 214 -----------------DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                            D+E  KE+     +   D +      ++  +A+ G  E+A++L
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F  +  +D + WSAII    + GY +EAL +F EMQ  K+KP +  L  +L ACA L  L
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
             G  IH    +  +  D   GTALV MYAKCG    A   F  M  +++ TWN++I G 
Sbjct: 447 KLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGY 506

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A  G   +AI++F+K++   + PD  T   V+ ACA    +D+G      + ++ G + +
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFESD 565

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
                 ++D+  + G L  AE + +      +   W  ++ A  ++G  +
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/624 (39%), Positives = 354/624 (56%), Gaps = 50/624 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +QAHA I+  G   + +++  +V  +A+S   + + A+ VF+ +  P+  ++NS++RA  
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMVAMYASS--GDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154

Query: 110 EHN---EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
            H         +  Y+ M  +    + FT P V K+C+       G  VH   ++ GL G
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEG 214

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D +V +S I MY   G +  AR++ D     D+  WNALI GY+K G+I  A++LF+  +
Sbjct: 215 DFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME 274

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            +N  S+ AMISG+ + G  E+A  LF+EM                +DG           
Sbjct: 275 HRNIVSWTAMISGYTQNGFAEQALGLFDEM---------------LQDG----------- 308

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
               ++KP    +  VL ACA   AL++G  IHD      + +++ + TAL  MYAKC  
Sbjct: 309 ---SEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYS 365

Query: 347 LDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           L  A   F+ +    K +  WN MI   A HG   +A+ +F  M R  ++PD +TF  +L
Sbjct: 366 LVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLL 425

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           S C+H+G+ID GL     M  ++ ++P VEHY C+VDLLGRAG L EA+E+IS MPM+  
Sbjct: 426 SGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAG 485

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
            +VW ALL ACR H  +E  E   + L  +EP N                 ++V K+R L
Sbjct: 486 PSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRAL 545

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           +K +G+K +PG S I++NG  H F   D SHPQ KEIY  L+ + EK+KM GY P++S V
Sbjct: 546 LKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFV 605

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L DI EEEKE     HSEKLAIAFG +NT PG  +RV KNLR+C DCH+ATK ISK+++R
Sbjct: 606 LHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYER 665

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +IIVRD  R+H F++G CSC D+W
Sbjct: 666 EIIVRDLNRFHCFKDGSCSCGDYW 689


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/690 (34%), Positives = 384/690 (55%), Gaps = 66/690 (9%)

Query: 26  TSEFSQKTILDI-LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           T+  +   +L + LN+ C   W   +  H   +K G   D +VSG LV  +  S+     
Sbjct: 181 TTRMTLAPVLKLCLNSGC--LWA-AEGVHGYAIKIGLEWDVFVSGALVNIY--SKCGRMR 235

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A  +F+ + + +V +WN +L+  ++         L+SE      +P++F+   +   C 
Sbjct: 236 DARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295

Query: 145 ITEAD--KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
               D  + G QVH   VK+GL  DV V +S + MY+  GC   AR++ +D    D+I W
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 355

Query: 203 NALIDGYLKCGDIEGAKELF---------------------------------------- 222
           N++I    +    E +  LF                                        
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 223 ----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K+  D +    + ++  + + G    A  +FN ++  D++ W+++I G   +G   
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           +AL +++ M++ ++ P ++  + ++ A + + AL+QG  +H +V +     D  +GT+LV
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 535

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKCG ++ A+++F+ M ++ +  WNAM+ GLA HG A++A+ LF  M+   + PDR+
Sbjct: 536 DMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV 595

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           +F  +LSAC+HAG+     + L  M   YGI+PE+EHY C+VD LGRAG + EA++VI +
Sbjct: 596 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIET 655

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDV 504
           MP + +A++  ALLGACR  G+VE G+R+   L  +EP +               R DDV
Sbjct: 656 MPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDV 715

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
              RK+MK + +K +PG S IDV  ++H F   D SHPQ   IY  ++++++ ++ +GY 
Sbjct: 716 TDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV 775

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P++  VL D+++EEKE +  YHSEKLAIA+G I+T    TIRVIKNLRVC DCH+A K I
Sbjct: 776 PDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYI 835

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SKVF+R+I++RD  R+HHFR+G CSC D+W
Sbjct: 836 SKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 225/492 (45%), Gaps = 57/492 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL---R 106
           K  HA I+ SG   DH++S  L+  +  S+  +   A +VF++  + ++  WN++L    
Sbjct: 97  KCTHARIVVSGSAGDHFLSNNLLTMY--SKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 107 ACLEHNE--PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           A ++ N+      + L+  +        + T   V K C  +        VH + +K GL
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----------- 213
             DV V  + + +Y+  G +  AR + D   + DV+ WN ++ GY++ G           
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 214 --------------------------DIEGAKEL----FKSTKDKNTGSYNAMISGFARF 243
                                     D+E  K++     KS  D +    N++++ +++ 
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G    AR++FN+M   D I+W+++I    +    +E++ +F ++  + +KP  F L+ + 
Sbjct: 335 GCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASIT 394

Query: 304 -----AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
                 AC  L  LDQG  IH H  +     D  + + ++DMY KCG +  A  VF  + 
Sbjct: 395 LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS 454

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
             +   W +MI G   +G  D A+ ++ +M++ ++ PD  TFA ++ A +    +++G Q
Sbjct: 455 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 514

Query: 419 ALTYMQQMYGI-DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
               + ++  + DP V     +VD+  + G + +A  +   M +  N A+W A+L    +
Sbjct: 515 LHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQ 571

Query: 478 HGEVEFGERLGK 489
           HG  E    L K
Sbjct: 572 HGNAEEAVNLFK 583



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 179/387 (46%), Gaps = 53/387 (13%)

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G   HA +V +G  GD  + ++ + MY+  G ++ ARQ+ D   + D++ WNA++  Y  
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 212 C-----GDIEGAKELFKSTKDK-----------------NTG-----------------S 232
                 G+ +    LF+  +                   N+G                  
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 233 YNAMISG-----FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           ++  +SG     +++ GR  +AR LF+ M ++D + W+ ++ GY + G  KEA ++F+E 
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 288 QRDKIKPRKFVLSCVLAACASLGA--LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            R  ++P +F +  +L  C   G   L+ G  +H    ++ +  D  +  +LV+MY+K G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR-----ITF 400
               A +VF DMK  ++ +WN+MI   A     ++++ LF  +  E ++PD      IT 
Sbjct: 336 CAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITL 395

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           A    AC    ++D+G Q   +  +  G D ++     I+D+  + G +  A  V + + 
Sbjct: 396 ATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS 454

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERL 487
             P+   W +++  C  +G  +   R+
Sbjct: 455 -APDDVAWTSMISGCVDNGNEDQALRI 480


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/627 (35%), Positives = 346/627 (55%), Gaps = 51/627 (8%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYP 137
           +F   E A KVF+ + + +  +WN+++    ++      I ++ +++    ++ +  T  
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            +  A +  +  + G+Q+H+   K G     +V +  I +Y+  G +     +  +  K 
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKP 285

Query: 198 DVICWNALIDGYLKCGDIEGAKELFK---------------------------------- 223
           D++ +NA+I GY   G+ E +  LFK                                  
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYC 345

Query: 224 --STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
             S    +     A+ + +++    E ARKLF+E  +K   +W+A+I GYT++G  ++A+
Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F EMQ+ +  P    ++C+L+ACA LGAL  G W+HD V+         + TAL+ MY
Sbjct: 406 SLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +  A ++F+ M  K   TWN MI G  +HG+  +A+ +F++M    + P  +TF 
Sbjct: 466 AKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFL 525

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
           CVL AC+HAG++  G +    M   YG +P V+HY C+VD+LGRAG+L  A + I +M +
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSI 585

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EP ++VWE LLGACR H +      + + L E++P N              R     A +
Sbjct: 586 EPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+  K+R +   PG ++I++    H F +GD SHPQVKEIY  L+K+  K++  GY P +
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPET 705

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L D++EEE+E   K HSE+LAIAFG I T+PG  IR+IKNLRVC DCH+ TKLISK+
Sbjct: 706 ELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKI 765

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +R I+VRD  R+HHF++G CSC D+W
Sbjct: 766 TERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 230/517 (44%), Gaps = 54/517 (10%)

Query: 20  SATNIPTSEF-SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           SAT   T+   S+ T LD    K  TS  HL Q HA I+  G   D  +   L +    S
Sbjct: 8   SATAETTAALISKNTYLDFF--KRSTSISHLAQTHAQIILHGFRNDISLLTKLTQ--RLS 63

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYP 137
                  A  +F SV +P+VF++N ++R    +  P   +S+++ +    D KPN  TY 
Sbjct: 64  DLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA 123

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
               A S    D+ G  +H   V +G   ++ + S+ ++MY  F  V  AR++ D   + 
Sbjct: 124 FAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKN---------------------------- 229
           D I WN +I GY K      + ++F+   +++                            
Sbjct: 184 DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI 243

Query: 230 ------TGSYN------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                 TG Y+        IS +++ G+ +    LF E    D + ++A+I GYT +G  
Sbjct: 244 HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGET 303

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           + +L +F E+     + R   L  ++     L  +     IH +  +++    A + TAL
Sbjct: 304 ELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTAL 360

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
             +Y+K   ++ A K+F++   K + +WNAMI G   +G  +DAI LF +MQ+ +  P+ 
Sbjct: 361 TTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNP 420

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +T  C+LSACA  G +  G + +  + +    +  +     ++ +  + G +AEA  +  
Sbjct: 421 VTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            M  + N   W  ++     HG+   G+    I  EM
Sbjct: 480 LMT-KKNEVTWNTMISGYGLHGQ---GQEALNIFYEM 512



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LKS       VS  L   +  S+ +  E A K+F+   + ++  WN+++    ++ 
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVY--SKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ISL+ EM   +  PN  T   +  AC+   A   G  VH  V        ++V +
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDK 228
           + I MYA  G + +AR++ D  +K + + WN +I GY   G  + A     E+  S    
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITP 519

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
              ++  ++   +  G  +E  ++FN M  +         ++ ++D   + G+ + AL+ 
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQF 579

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
              M    I+P   V   +L AC
Sbjct: 580 IEAMS---IEPGSSVWETLLGAC 599


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 375/637 (58%), Gaps = 19/637 (2%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           L +LN+ C  + + L Q H + +K G   D Y +G L+   A S       A ++     
Sbjct: 1   LSLLNS-C-KNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 58

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGV 153
           +P+ F++N+++R   E +EP   ++++ EM+      P+ F++  V KA     + + G 
Sbjct: 59  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 118

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q+H   +K+GL   + V ++ I MY   GCV  AR++ D+  + +++ WNA+I    +  
Sbjct: 119 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 178

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D+ GA+E+F     +N  S+N M++G+ + G  E A+++F+EM  +D+++WS +I G   
Sbjct: 179 DVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 238

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G + E+   F E+QR  + P +  L+ VL+AC+  G+ + G  +H  V++        +
Sbjct: 239 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSV 298

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             AL+DMY++CG + MA  VFE M+ K  + +W +MI GLAMHG+ ++A+ LF +M    
Sbjct: 299 NNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYG 358

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + PD I+F  +L AC+HAG+I+ G    + M+++Y I+PE+EHYGC+VDL GR+G L +A
Sbjct: 359 VTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKA 418

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
            + I  MP+ P A VW  LLGAC  HG +E  E++ + L E++P N              
Sbjct: 419 YDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 478

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            +  DVA +RK M  + IK     S+++V   +++F  G+       E +  LK+II +L
Sbjct: 479 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRL 538

Query: 559 KME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           K E GY+P  +  L+D++EEEKE     HSEKLA+AF       GA IR++KNLR+C DC
Sbjct: 539 KDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDC 598

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+  KL SKV+  +I+VRDR R+H F++G CSC D+W
Sbjct: 599 HAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/439 (48%), Positives = 293/439 (66%), Gaps = 18/439 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR---D 290
            ++IS ++  G  + AR LF  M +++ I+WS +I+GY + G YKEAL +F EMQ    +
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            ++P +F +S VLAAC  LGAL+ G W H ++ +  + VD VLGTAL+DMYAKCG ++ A
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222

Query: 351 WKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
             VF ++   K+V  W+AMI GLAMHG A++ + LF KM  + +RP+ +TF  V  AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
            G++  G   L  M + Y I P ++HYGC+VDL GRAG + EA  V+ SMPMEP+  VW 
Sbjct: 283 GGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWG 342

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERG 515
           ALL   R HG++E  E   K L+E+EP N               R +DV  +R LM+  G
Sbjct: 343 ALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMG 402

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           IK  PG S+I+V GV+HEF  GD SHP+ ++I++ML++I+E+LK+EGY  N+ +VL D+D
Sbjct: 403 IKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLD 462

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           EE KE A   HSEKLA+A+GF+ T PG  IR++KNLR+C DCH A K+ISKVF R+IIVR
Sbjct: 463 EEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVR 522

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D  R+HHF  G CSC D+W
Sbjct: 523 DCNRFHHFTQGLCSCRDYW 541



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 152/331 (45%), Gaps = 56/331 (16%)

Query: 99  FVWNSVLRACLE-HNEPW----RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
           F+WN+++RA ++   +P       IS++  M     +P+  T+P + ++ +       G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            VHA +++ GL  D  V++S I MY+  G V+ AR +     + +VI W+ +I+GY++CG
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCG 144

Query: 214 DIEGAKELFKSTK-----------------------------DKNTGSY----------- 233
             + A  LF+  +                              K   +Y           
Sbjct: 145 QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVV 204

Query: 234 --NAMISGFARFGRFEEARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
              A+I  +A+ G  E+A  +F+ +  +KD + WSA+I G    G  +E + +F++M   
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 264

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR----NSICVDAVLGTALVDMYAKCGR 346
            ++P       V  AC   G + +G    D+++R     SI         +VD+Y + GR
Sbjct: 265 GVRPNAVTFLAVFCACVHGGLVSEG---KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGR 321

Query: 347 LDMAWKVFEDMKMK-EVFTWNAMIGGLAMHG 376
           +  AW V + M M+ +V  W A++ G  MHG
Sbjct: 322 IKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 260 DEITWSAIIDGYTK-----DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           +   W+ +I  + +      G     + +F  M+   ++P       +L + AS   L  
Sbjct: 23  ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHL 82

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H  + R  + +D  + T+L+ MY+  G +DMA  +F  M  + V +W+ MI G   
Sbjct: 83  GRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVR 142

Query: 375 HGRADDAIELFFKMQR---EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            G+  +A+ LF +MQ      +RP+  T + VL+AC   G ++ G  A  Y+ +  G+  
Sbjct: 143 CGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKC-GMPV 201

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +V     ++D+  + G + +A  V S++    +   W A++     HG  E
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAE 252



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 34/229 (14%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN--VFVWNSV 104
           +H K AHA I K G   D  +   L+  +A  +  + E A  VF+++  PN  V  W+++
Sbjct: 185 EHGKWAHAYIDKCGMPVDVVLGTALIDMYA--KCGSVEKATWVFSNL-GPNKDVMAWSAM 241

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG- 163
           +     H      + L+S+M+    +PN  T+  VF AC           VH  +V  G 
Sbjct: 242 ISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCAC-----------VHGGLVSEGK 290

Query: 164 -----LCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYL 210
                +  D  +  + IQ Y C        G + +A  ++     + DV+ W AL+ G  
Sbjct: 291 DYLRRMTEDYSIIPT-IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSR 349

Query: 211 KCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
             GDIE  +   K     +  N+G+Y  + + +A+ GR+E+ R + + M
Sbjct: 350 MHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLM 398


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 375/637 (58%), Gaps = 19/637 (2%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           L +LN+ C  + + L Q H + +K G   D Y +G L+   A S       A ++     
Sbjct: 9   LSLLNS-C-KNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGV 153
           +P+ F++N+++R   E +EP   ++++ EM+      P+ F++  V KA     + + G 
Sbjct: 67  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q+H   +K+GL   + V ++ I MY   GCV  AR++ D+  + +++ WNA+I    +  
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGN 186

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D+ GA+E+F     +N  S+N M++G+ + G  E A+++F+EM  +D+++WS +I G   
Sbjct: 187 DVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAH 246

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G + E+   F E+QR  + P +  L+ VL+AC+  G+ + G  +H  V++        +
Sbjct: 247 NGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSV 306

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             AL+DMY++CG + MA  VFE M+ K  + +W +MI GLAMHG+ ++A+ LF +M    
Sbjct: 307 NNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYG 366

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + PD I+F  +L AC+HAG+I+ G    + M+++Y I+PE+EHYGC+VDL GR+G L +A
Sbjct: 367 VTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKA 426

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
            + I  MP+ P A VW  LLGAC  HG +E  E++ + L E++P N              
Sbjct: 427 YDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 486

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            +  DVA +RK M  + IK     S+++V   +++F  G+       E +  LK+II +L
Sbjct: 487 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRL 546

Query: 559 KME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           K E GY+P  +  L+D++EEEKE     HSEKLA+AF       GA IR++KNLR+C DC
Sbjct: 547 KDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDC 606

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+  KL SKV+  +I+VRDR R+H F++G CSC D+W
Sbjct: 607 HAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/593 (39%), Positives = 345/593 (58%), Gaps = 27/593 (4%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLE---HNEPWRVISLYSEMVGVDSKPNKFT 135
           R  + + A++VF  +   +   WNS+L A  +   H E  R   L+ ++     +PN  +
Sbjct: 53  RCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYAR--QLFEKI----PQPNTVS 106

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  +  AC        GV        +    DV   ++ I   A  G + +AR++     
Sbjct: 107 Y-NIMLACHWHHL---GVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMP 162

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + + + W+A++ GY+ CGD++ A E F +   ++  ++ AMI+G+ +FGR E A +LF E
Sbjct: 163 EKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQE 222

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M+ +  +TW+A+I GY ++G  ++ L +F  M    +KP    L+ VL  C++L AL  G
Sbjct: 223 MSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLG 282

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             +H  V +  +  D   GT+LV MY+KCG L  AW++F  +  K+V  WNAMI G A H
Sbjct: 283 KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQH 342

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G    A+ LF +M++E ++PD ITF  VL AC HAG++D G+Q    M++ +GI+ + EH
Sbjct: 343 GAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEH 402

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           Y C+VDLLGRAG L+EA ++I SMP +P+ A++  LLGACR H  +   E   K LLE++
Sbjct: 403 YACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELD 462

Query: 496 PQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           P                 R D VA +R+ MK+  +   PG S I++N V+H FR+ D  H
Sbjct: 463 PTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLH 522

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
           P++  I+  LK + +K+K+ GY P+   VL D+ EE KE    +HSEKLAIAFG +    
Sbjct: 523 PELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPL 582

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G  IRV KNLRVC DCHSATK IS +  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 583 GVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 49/342 (14%)

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA-RFGRFEEARKL- 252
           + ++VI  N LI  Y++CGDI+ A  +F+  K K+T ++N++++ FA + G FE AR+L 
Sbjct: 37  NNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLF 96

Query: 253 ------------------------------FNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                         F+ M  KD  +W+ +I    + G   EA  
Sbjct: 97  EKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARR 156

Query: 283 VFNEMQRDKIKPRKFVL--SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +F+ M      P K  +  S +++   + G LD  +         S+    +  TA++  
Sbjct: 157 LFSAM------PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSV----ITWTAMITG 206

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y K GR+++A ++F++M M+ + TWNAMI G   +GRA+D + LF  M    ++P+ ++ 
Sbjct: 207 YMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSL 266

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL  C++   +  G Q    + +   +  +      +V +  + G L +A E+   +P
Sbjct: 267 TSVLLGCSNLSALQLGKQVHQLVCKC-PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP 325

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
            + +   W A++    +HG    G++  ++  EM+ +  + D
Sbjct: 326 RK-DVVCWNAMISGYAQHGA---GKKALRLFDEMKKEGLKPD 363



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 60/249 (24%)

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH-GR 377
           H H   N+   + +    L+  Y +CG +D A +VFEDMK+K   TWN+++   A   G 
Sbjct: 32  HQHEFNNN---NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGH 88

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSAC--AHAGMIDRGLQALTYMQQMYGIDPEVEH 435
            + A +LF K+     +P+ +++  +L AC   H G+ D    A  +   M   D  V  
Sbjct: 89  FEYARQLFEKIP----QPNTVSYNIML-ACHWHHLGVHD----ARGFFDSMPLKD--VAS 137

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG---AC----------------- 475
           +  ++  L + G + EA  + S+MP E N   W A++    AC                 
Sbjct: 138 WNTMISALAQVGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRS 196

Query: 476 -----------RKHGEVEFGERLGK-----------ILLEMEPQNRRCDDVAKMRKLMKE 513
                       K G VE  ERL +            ++    +N R +D  ++ + M E
Sbjct: 197 VITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLE 256

Query: 514 RGIKTNPGS 522
            G+K N  S
Sbjct: 257 TGVKPNALS 265



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 14/151 (9%)

Query: 4   KVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQ 63
           ++  T L   +KP  +S T++            +L     ++ Q  KQ H ++ K     
Sbjct: 249 RLFRTMLETGVKPNALSLTSV------------LLGCSNLSALQLGKQVHQLVCKCPLSS 296

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           D     +LV  +  S+  + + A ++F  + + +V  WN+++    +H    + + L+ E
Sbjct: 297 DTTAGTSLVSMY--SKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDE 354

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           M     KP+  T+  V  AC+       GVQ
Sbjct: 355 MKKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/641 (38%), Positives = 360/641 (56%), Gaps = 99/641 (15%)

Query: 48  HLKQAHAVILKSGHFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
            LKQ HA  L++ + ++    ++ G +++   +S FS+   A +VF+S+   + F+WN++
Sbjct: 40  QLKQLHAFTLRTTYPEEPATLFLYGKILQ--LSSSFSDVNYAFRVFDSIENHSSFMWNTL 97

Query: 105 LRACL-EHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +RAC  + +       LY +M+   +S P+K T+P V KAC+      EG QVH  +VK+
Sbjct: 98  IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 157

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G  G                               DV   N LI  Y  CG ++      
Sbjct: 158 GFGG-------------------------------DVYVNNGLIHLYGSCGCLD------ 180

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                     ARK+F+EM ++  ++W+++ID   + G Y  AL+
Sbjct: 181 -------------------------LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQ 215

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVD 339
           +F EMQR   +P  + +  VL+ACA LG+L  G W H  + R     + +D ++  +L++
Sbjct: 216 LFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 274

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM--QREKMRPDR 397
           MY KCG L MA +VF+ M+ +++ +WNAMI G A HGRA++A+  F +M  +RE +RP+ 
Sbjct: 275 MYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNS 334

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +TF  +L AC H G +++G Q    M + Y I+P +EHYGCIVDL+ RAGY+ EA +++ 
Sbjct: 335 VTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVM 394

Query: 458 SMPMEPNAAVWEALLGACRKHG-EVEFGERLGKILLEMEPQNR----------------- 499
           SMPM+P+A +W +LL AC K G  VE  E + + ++  +  N                  
Sbjct: 395 SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVY 454

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R +DV  +RKLM E GI+  PG S I++NG+ HEF  GD SHPQ K+IY  LK I 
Sbjct: 455 ASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVID 514

Query: 556 EKLKMEGYSPNSSQV-LFD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           ++L+  GY P+ SQ  L D  ++  KE + + HSE+LAIAFG IN  P   IR+ KNLRV
Sbjct: 515 DRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRV 574

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH  TKLISKVF  +IIVRDRVR+HHF++G CSC D+W
Sbjct: 575 CNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 10/195 (5%)

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV---LGTALVDMYAKCGRLDMAWKVF 354
           V + VL  C+ +  L Q   +H    R +   +     L   ++ + +    ++ A++VF
Sbjct: 27  VHATVLQTCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVF 83

Query: 355 EDMKMKEVFTWNAMIGGLAMH-GRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGM 412
           + ++    F WN +I   A    R ++A  L+ KM +R +  PD+ TF  VL ACA+   
Sbjct: 84  DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 143

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
              G Q    + + +G   +V     ++ L G  G L  A +V   MP E +   W +++
Sbjct: 144 FSEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP-ERSLVSWNSMI 201

Query: 473 GACRKHGEVEFGERL 487
            A  + GE +   +L
Sbjct: 202 DALVRFGEYDSALQL 216


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/658 (35%), Positives = 366/658 (55%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  ++ +G   + +    +V  +A  R    E A K+F+ + + ++  WN+++    
Sbjct: 195 KEIHCQLIVNGFASNVFAMTGVVNMYAKCRL--VEEAYKMFDRMPERDLVCWNTIISGYA 252

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + L   M     +P+  T  ++  A +   + + G  +H + ++ G    V+
Sbjct: 253 QNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVN 312

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + MY+  G V  AR I D  +   V+ WN++IDGY++ GD   A E+F+   D+ 
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQ 372

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 +    N++IS +++  R + A 
Sbjct: 373 VEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAA 432

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F  +  K  ++W+A+I GY ++G   EA++ F +MQ   IKP  F +  V+ A A L 
Sbjct: 433 EIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELS 492

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L Q  WIH  V R  +  +  + TALVDMYAKCG +  A K+F+ M  + V TWNAMI 
Sbjct: 493 VLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMID 552

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    A+ELF KM++E ++P+ +TF CVLSAC+H+G+++ G Q    M++ YG++
Sbjct: 553 GYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLE 612

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRA  L EA + I  MP+EP  +V+ A+LGACR H  VE GE+    
Sbjct: 613 PAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANR 672

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           + +++P +                 D VA++R  M+++GI+  PG S++++   +H F +
Sbjct: 673 IFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYS 732

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  SHPQ K+IY  L+ +  ++K  GY P+++ V  D+++  KE     HSEKLAIAF  
Sbjct: 733 GTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSL 791

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG TI + KNLRVC DCH+ATK IS V KR+IIVRD  R+HHF++G CSC D+W
Sbjct: 792 LNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 243/520 (46%), Gaps = 65/520 (12%)

Query: 20  SATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSR 79
           S T IP+  +   +   IL   C TS + L Q   +I+K+G + +H     LV      +
Sbjct: 67  SRTYIPSHVYKHPSA--ILLELC-TSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFC--K 121

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           F +   A +VF  +      +++++L+    ++     +S +  M     +P  + +  +
Sbjct: 122 FGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYL 181

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            K C      ++G ++H  ++ NG   +V   +  + MYA    V +A ++ D   + D+
Sbjct: 182 LKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDL 241

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDK-----------------NTGSYN-------- 234
           +CWN +I GY + G  + A EL    +++                 + GS          
Sbjct: 242 VCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGY 301

Query: 235 AMISGFARF--------------GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           +M +GF  F              G    AR +F+ M  K  ++W+++IDGY ++G    A
Sbjct: 302 SMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAA 361

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +E+F +M  ++++     +   L ACA LG ++QG ++H  + +  +  D  +  +L+ M
Sbjct: 362 MEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISM 421

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y+KC R+D+A ++FE+++ K + +WNAMI G A +GR ++AI+ F KMQ + ++PD  T 
Sbjct: 422 YSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTM 481

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYG------IDPEVEHYGCIVDLLGRAGYLAEAEE 454
             V+ A A        L  L   + ++G      +D  V     +VD+  + G +  A +
Sbjct: 482 VSVIPALAE-------LSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +   M  E +   W A++     HG       LGK  LE+
Sbjct: 535 LFDMMD-ERHVTTWNAMIDGYGTHG-------LGKAALEL 566



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           + +L  C S+  L Q I +   + +N +  + +  T LV ++ K G L  A +VF+ ++ 
Sbjct: 81  AILLELCTSMKELHQFIPL---IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIED 137

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K    ++ M+ G A +   DDA+  F +M+ + +RP    F  +L  C     + +G + 
Sbjct: 138 KIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKG-KE 196

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +     + G    V     +V++  +   + EA ++   MP E +   W  ++    ++G
Sbjct: 197 IHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP-ERDLVCWNTIISGYAQNG 255

Query: 480 EVEFGERLGKILLEMEPQNRRCDDVA 505
              FG+   +++L M+ + +R D + 
Sbjct: 256 ---FGKTALELVLRMQEEGKRPDSIT 278


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 336/583 (57%), Gaps = 45/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A K+F+     N+ ++N+++   +       V+++  EM+    +P++ T  +   ACS 
Sbjct: 294 ARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSE 353

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +    G   H +V++NGL G                               D +C NA+
Sbjct: 354 LDDVSCGKWCHGYVLRNGLEG------------------------------WDNVC-NAI 382

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I+ Y+KCG  E A  +F    +K   S+N++I+GF R G  E A K+F+ M D D ++W+
Sbjct: 383 INMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWN 442

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I    ++  +KEA+E+F  MQ + I   K  +  V +AC  LGALD   WIH ++K+ 
Sbjct: 443 TMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKK 502

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            I  D  LGTALVDM+A+CG    A +VF  M  ++V  W A IG +AM G    AIELF
Sbjct: 503 DIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELF 562

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M ++ ++PD + F  +L+A +H G++++G      M+ +YGI P+  HYGC+VDLLGR
Sbjct: 563 DEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGR 622

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG L+EA  +I+SM MEPN  +W +LL ACR H  V+      + + E++P+        
Sbjct: 623 AGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLL 682

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   R DDVAK+R  +KE+G    PGSS I++NG I EF TGD SHP++  I  ML
Sbjct: 683 SNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPML 742

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           K+I  +L+  GY P+ + VL D++E+EKE     HSEKLAIAF  I+T  G  IRV KNL
Sbjct: 743 KEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNL 802

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCHS  KL+SK + R+IIVRD  R+H F+ G CSC D+W
Sbjct: 803 RICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 201/449 (44%), Gaps = 73/449 (16%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGT--LVKCHANSRFSNFELALKVFNSVHKPNV 98
           KC T    LKQ H+ I K+G    H +S T  +  C     F + E A K      + N 
Sbjct: 42  KCKT-MTELKQLHSQITKNG-LNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 99  -----FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
                ++++S++R        ++ I ++ +++ + + P+ FT+P V  AC+ + A  EG 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVH  +VK G   D+ V+                               N+LI  Y +CG
Sbjct: 160 QVHGAIVKMGFERDMFVE-------------------------------NSLIHFYGECG 188

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           +I+                                 R++F++M++++ ++W+++I GY K
Sbjct: 189 EIDCM-------------------------------RRVFDKMSERNVVSWTSLIGGYAK 217

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G YKEA+ +F EM    I+P    +  V++ACA L  L  G  +   +    + V+A++
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM 277

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             ALVDMY KCG +D A K+F++   K +  +N ++      G A + + +  +M +   
Sbjct: 278 VNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP 337

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           RPDRIT    +SAC+    +  G     Y+ +  G++        I+++  + G    A 
Sbjct: 338 RPDRITMLSAVSACSELDDVSCGKWCHGYVLR-NGLEGWDNVCNAIINMYMKCGKQEMAC 396

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVE 482
            V   M +      W +L+    ++G++E
Sbjct: 397 RVFDRM-LNKTRVSWNSLIAGFVRNGDME 424



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 23/296 (7%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + E A K+F+++   ++  WN+++ A ++ +     I L+  M       +K T   
Sbjct: 419 RNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVG 478

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A      +H ++ K  +  D+H+ ++ + M+A  G    A Q+ +   K D
Sbjct: 479 VASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRD 538

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEARKLFN 254
           V  W A I      G+  GA ELF     +        + A+++  +  G  E+   +F 
Sbjct: 539 VSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFR 598

Query: 255 EMND-----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M D        + +  ++D   + G   EAL + N MQ   ++P   +   +LAAC   
Sbjct: 599 SMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQ---MEPNDVIWGSLLAACRVH 655

Query: 310 GALDQGIWIHDHV-----KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
             +D   +  + +     +R  I V       L ++YA  GR D   KV   +K K
Sbjct: 656 KNVDIAAYAAERISELDPERTGIHV------LLSNIYASAGRWDDVAKVRLHLKEK 705



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 56/261 (21%)

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG---RLDMAWKVFE-----DM 357
           C ++  L Q   +H  + +N +    +  T L+    + G    L+ A K  E     + 
Sbjct: 43  CKTMTELKQ---LHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
            M   + ++++I G +  G    AI +F ++      PD  TF  VLSAC  +  +  G 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 418 QA------LTYMQQMYGIDPEVEHYG------CI---------------VDLLG---RAG 447
           Q       + + + M+  +  +  YG      C+                 L+G   + G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 448 YLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
              EA  +   M    + PN+     ++ AC K  +++ GE++   + E+E +       
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVN 279

Query: 500 -------RCDDVAKMRKLMKE 513
                  +C  + K RK+  E
Sbjct: 280 ALVDMYMKCGAIDKARKIFDE 300


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 354/621 (57%), Gaps = 19/621 (3%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H   LK+    D  V   L + + +   +   LA ++F+ +  P+V +WN ++RA  
Sbjct: 28  KKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEIPNPSVILWNQIIRA-Y 84

Query: 110 EHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             N P+   I LY  M+ +  +PNK+TYP V KACS   A ++GV++H+H    GL  DV
Sbjct: 85  AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ +  YA  G + +A+++    S  DV+ WNA+I G    G  + A +L    +++
Sbjct: 145 FVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEE 204

Query: 229 NTGSYNAMISGFARFGR-FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                ++ I G     +    ARK+F+ M  ++E++WSA+I GY      KEAL++F  M
Sbjct: 205 GICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMM 264

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q   I P    +  VL AC+ L AL  G   H ++       D ++  AL+DMY+KCG++
Sbjct: 265 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 324

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A +VF  M   ++ +WNAMI G  +HG   +A+ LF  +    ++PD ITF C+LS+C
Sbjct: 325 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 384

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H+G++  G      M + + I P +EH  C+VD+LGRAG + EA   I +MP EP+  +
Sbjct: 385 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 444

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W ALL ACR H  +E GE + K +  + P++               R DD A +R   K+
Sbjct: 445 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 504

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
            G+K  PG S I++NG++H F  GD SH Q+ +I   L++++ ++K  GY    S V  D
Sbjct: 505 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQD 564

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           ++EEEKE    YHSEKLAIAFG +N   G  I V KNLRVC DCH+A K ++ + KR+I 
Sbjct: 565 VEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREIT 624

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRD  R+HHF+NG C+C DFW
Sbjct: 625 VRDANRFHHFKNGTCNCGDFW 645



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 19/356 (5%)

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           K  Y  + +AC  +++  E  ++H H +KN    D  V     ++Y     V  AR++ D
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEE 248
           +     VI WN +I  Y   G  +GA +L+ S        N  +Y  ++   +     E+
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 249 ARKLFNEMN----DKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVL 303
             ++ +       + D    +A++D Y K G   EA  +F+ M  RD +       + ++
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV-----AWNAMI 182

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           A C+  G  D  + +   ++   IC ++   + +V +   C  L  A K+F+ M ++   
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNS---STIVGVLPTCQCLLYARKIFDVMGVRNEV 239

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W+AMIGG        +A+++F  MQ   + PD  T   VL AC+H   +  G  +  Y+
Sbjct: 240 SWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 299

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             + G   +      ++D+  + G ++ A EV + M    +   W A++     HG
Sbjct: 300 -IVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHG 353



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L AC    +L +   IH H  +N+   D+ +   L  +Y  C ++ +A ++F+++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           V  WN +I   A +G  D AI+L+  M    +RP++ T+  VL AC+    I+ G++  +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +  +M+G++ +V     +VD   + G L EA+ + SSM    +   W A++  C  +G  
Sbjct: 134 H-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG-- 189

Query: 482 EFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMI 525
                              CDD  ++   M+E GI   P SS I
Sbjct: 190 ------------------LCDDAVQLIMQMQEEGI--CPNSSTI 213


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/673 (35%), Positives = 379/673 (56%), Gaps = 37/673 (5%)

Query: 16  PEEISATNIPTSEFSQKTILDIL------NTKCH--------TSWQHLKQAHAVILKSGH 61
           P EI+ T   TSE   K+ L  L       T+ H         +   L Q HA I+    
Sbjct: 50  PPEITTTISKTSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNL 109

Query: 62  FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISL 120
                ++  L+   +  +  N  LA  VFN  HKP N+F +N+++R    ++  +  I  
Sbjct: 110 SSSSLITTQLISSSSLRKSINHSLA--VFNH-HKPKNLFTFNALIRGLTTNSHFFNAIFH 166

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           +  M+    KP++ TYP V K+ +   + + G+ +H  +++ G+  D  V+ S + MY  
Sbjct: 167 FRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVK 226

Query: 181 FGCVNKARQILDDG-----SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
              +  A ++ D+      S S  + WN LI G  K G ++ A +LFK+   K   S++ 
Sbjct: 227 VEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWST 286

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I GFA+ G  + A +LF++M +K+ ++W+ ++DG++++G  ++AL +F++M  + ++P 
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPN 346

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            F +   L+ACA +G L+ G+ IH ++K N + +   LGTALVDMYAKCG ++ A +VF 
Sbjct: 347 AFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFG 406

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           + + K + TW  MI G A+HG ++ AI  F +M    ++PD + F  +L+AC H+G +D 
Sbjct: 407 ETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDI 466

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           GL     M+  Y I+P ++HY  IVD+LGR+G L EA   I  MPM P+  +W AL  AC
Sbjct: 467 GLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCAC 526

Query: 476 RKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPG 521
           R H + +  +     LL++EP +               + +D  ++R LM+ RG+  N G
Sbjct: 527 RAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSG 586

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S I+V G +H F +GD  H   K I L L++I+     +GY P +  VL ++++EEKE 
Sbjct: 587 WSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKED 646

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
               H EKLA+AF  I T PG TIR++KNL+VC DCHS  K  SK+ +R+I++RD  R+H
Sbjct: 647 VLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFH 706

Query: 642 HFRNGKCSCNDFW 654
           HF++G CSC D W
Sbjct: 707 HFKDGSCSCRDHW 719


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/661 (34%), Positives = 361/661 (54%), Gaps = 55/661 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q  KQ H+ +LK+G   D+   G+L+  +   +  + E A  +FN   + NV +WN +L 
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYV--KCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + ++  +   ++ +M      PN+FTYP + + C+ T   + G Q+H+  +KNG   
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D++V    I MY+ +GC++KAR+IL+   K DV+ W ++I GY++    E A   FK  +
Sbjct: 380 DMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQ 439

Query: 227 D---------------------------------------KNTGSYNAMISGFARFGRFE 247
           D                                        +   +N +++ +AR GR E
Sbjct: 440 DCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSE 499

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA  LF E+  KDEITW+ +I G+ +   YK+AL VF +M +   K   F     ++A A
Sbjct: 500 EAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALA 559

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L  + QG  +H    +     +  +  AL+ +Y KCG ++ A  +F +M ++   +WN 
Sbjct: 560 NLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNT 619

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I   + HGR  +A++LF +M++E ++P+ +TF  VL+AC+H G+++ GL     M  +Y
Sbjct: 620 IITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVY 679

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           G++P  +HY C+VD+LGRAG L  A   +  MP+  NA +W  LL AC+ H  +E GE  
Sbjct: 680 GLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELA 739

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K LLE+EP +               +  +  ++RK+MK+RGI+  PG S I+V   +H 
Sbjct: 740 AKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHA 799

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HP   +IY  L ++ ++L   GY   +  +  + ++E+K+     HSEKLA+A
Sbjct: 800 FFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVA 859

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG +   P   +RVIKNLRVC+DCHS  K  S+V +R+I++RD  R+HHF +G CSC D+
Sbjct: 860 FGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDY 919

Query: 654 W 654
           W
Sbjct: 920 W 920



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 188/448 (41%), Gaps = 46/448 (10%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  + + HA  +  G   D  +   L+  +A +       A +VF  +   +   W ++L
Sbjct: 59  WPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGL--VWQARQVFKELSSRDHVSWVAML 116

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               +         LYS+M      P  +   +V  AC+  +   +G  +HA V K   C
Sbjct: 117 SGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC 176

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            +  V ++ I +Y  FG    A ++  D    D + +N LI G+ +CG  E A ++F   
Sbjct: 177 SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM 236

Query: 226 --------------------------KDKNTGSY-------------NAMISGFARFGRF 246
                                     K K   SY              +++  + + G  
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +FN  +  + + W+ ++  Y +     ++ E+F +MQ   I P +F   C+L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G ++ G  IH    +N    D  +   L+DMY+K G LD A K+ E ++ ++V +W 
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQ 424
           +MI G   H   ++A+  F +MQ   + PD I  A   SACA    + +GLQ  A  Y+ 
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
              G   ++  +  +V+L  R G   EA
Sbjct: 477 ---GYAADISIWNTLVNLYARCGRSEEA 501



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 178/368 (48%), Gaps = 47/368 (12%)

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +++HA  V  GL  D  + +  I +YA  G V +ARQ+  + S  D + W A++ GY + 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 213 GDIEGAKELFKS--------------------TKDK-------------------NTGSY 233
           G  + A  L+                      TK K                    T   
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+I+ +  FG F+ A ++F +M   D +T++ +I G+ + G+ + AL++F+EMQ   ++
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P    ++ +LAACAS+G L +G  +H ++ +  +  D +   +L+D+Y KCG ++ A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADD---AIELFFKMQREKMRPDRITFACVLSACAHA 410
           F       V  WN M   L  +G+  D   + E+F +MQ   + P++ T+ C+L  C   
Sbjct: 303 FNLGDRTNVVLWNLM---LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCT 359

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G I+ G Q +  +    G + ++   G ++D+  + G L +A +++  M  + +   W +
Sbjct: 360 GQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL-EMLEKRDVVSWTS 417

Query: 471 LLGACRKH 478
           ++    +H
Sbjct: 418 MIAGYVQH 425



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 190/393 (48%), Gaps = 50/393 (12%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           ++ AT I  ++F+   IL      C    +  +Q H++ +K+G   D YVSG L+  +  
Sbjct: 336 QMQATGIHPNQFTYPCILR--TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY-- 391

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S++   + A K+   + K +V  W S++   ++H+     ++ + EM      P+     
Sbjct: 392 SKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLA 451

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +   AC+  +A ++G+Q+HA V  +G   D+ + ++ + +YA  G   +A  +  +    
Sbjct: 452 SAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK 511

Query: 198 DVICWNALIDG-------------YLKCG----------------------DIEGAKEL- 221
           D I WN LI G             ++K G                      DI+  K++ 
Sbjct: 512 DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K+     T   NA+IS + + G  E+A+ +F+EM+ ++E++W+ II   ++ G   
Sbjct: 572 GRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGL 631

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TA 336
           EAL++F++M+++ +KP       VLAAC+ +G +++G+     +  N   ++ +      
Sbjct: 632 EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS-NVYGLNPIPDHYAC 690

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           +VD+  + G+LD A +  ++M +    T NAMI
Sbjct: 691 VVDILGRAGQLDRARRFVDEMPI----TANAMI 719


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/727 (32%), Positives = 388/727 (53%), Gaps = 93/727 (12%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           E ++  NI  +  +  +IL   N   ++  +  ++ H ++   G   D  V+  L+  + 
Sbjct: 146 ERMTDANIEPNRITFLSILKACNN--YSILEKGRKIHTIVKAMGMETDVAVATALITMY- 202

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S+     +A +VF+ + + NV  W ++++A  +H +      LY +M+     PN  T+
Sbjct: 203 -SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTF 261

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++  +C+  EA   G ++H+H+ + GL  D+ V ++ I MY     V +AR+I D  SK
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSK 321

Query: 197 SDVICWNALIDGYLKCG--DIEGAKELFKST-KDKNTGSY-------------------- 233
            DVI W+A+I GY + G  D E   E+F+   + +  G +                    
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381

Query: 234 ---------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSA------ 266
                                 A+ + +A+ G   EA ++F++M +K+ + W++      
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYI 441

Query: 267 -------------------------IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                                    +I GY ++G   +  E+ + M+ +  +P +  +  
Sbjct: 442 KCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVIT 501

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L AC +L  L++G  +H    +  +  D V+ T+L+ MY+KCG++  A  VF+ M  ++
Sbjct: 502 ILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRD 561

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
              WNAM+ G   HG   +A++LF +M +E++ P+ IT   V+SAC+ AG++  G +   
Sbjct: 562 TVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFR 621

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            MQ+ + + P  +HYGC+VDLLGRAG L EAEE I SMP EP+ +VW ALLGAC+ H  V
Sbjct: 622 MMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNV 681

Query: 482 EFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  ER    +LE+EP              Q  R DD  K+R++M +RG+K + G S I++
Sbjct: 682 QLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEI 741

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
           +G IH F   D +HP++  I+  L+ + +++K  GY+P+   VL D+D+ +KE A  +HS
Sbjct: 742 DGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHS 801

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIA+G + T  G  IR++KNLRVC DCH+ATK ISK+ KR+I+ RD  R+H+F NG 
Sbjct: 802 EKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGT 861

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 862 CSCGDFW 868



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/507 (25%), Positives = 226/507 (44%), Gaps = 81/507 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  + + G   D Y+  +L+  +  S+F +   A +VF  +   +V  W+S++ A  
Sbjct: 76  KMVHKQLDELGVEIDIYLGNSLINFY--SKFEDVASAEQVFRRMTLRDVVTWSSMIAAYA 133

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +N P +    +  M   + +PN+ T+ ++ KAC+     ++G ++H  V   G+  DV 
Sbjct: 134 GNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVA 193

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK------ 223
           V ++ I MY+  G ++ A ++    ++ +V+ W A+I    +   +  A EL++      
Sbjct: 194 VATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG 253

Query: 224 ----------------STKDKNTGSY-----------------NAMISGFARFGRFEEAR 250
                           + +  N G                   NA+I+ + +    +EAR
Sbjct: 254 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAR 313

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGY-----YKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           ++F+ M+ +D I+WSA+I GY + GY       E  ++   M+R+ + P K     +L A
Sbjct: 314 EIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRA 373

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR------------------- 346
           C + GAL+QG  IH  + +    +D  L TA+ +MYAKCG                    
Sbjct: 374 CTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAW 433

Query: 347 ------------LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
                       L  A KVF +M  + V +WN MI G A +G      EL   M+ E  +
Sbjct: 434 TSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ 493

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           PDR+T   +L AC     ++RG   L + + +  G++ +      ++ +  + G +AEA 
Sbjct: 494 PDRVTVITILEACGALAGLERG--KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEAR 551

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGE 480
            V   M      A W A+L    +HG+
Sbjct: 552 TVFDKMSNRDTVA-WNAMLAGYGQHGD 577



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 186/411 (45%), Gaps = 49/411 (11%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N  TY  V + C+     ++G  VH  + + G+  D+++ +S I  Y+ F  V  A Q+ 
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN---------------------- 229
              +  DV+ W+++I  Y        A + F+   D N                      
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174

Query: 230 -----------------TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                 A+I+ +++ G    A ++F++M +++ ++W+AII    
Sbjct: 175 KGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           +     EA E++ +M +  I P       +L +C +  AL++G  IH H+    +  D +
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG-----RADDAIELFFK 387
           +  AL+ MY KC  +  A ++F+ M  ++V +W+AMI G A  G       D+  +L  +
Sbjct: 295 VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLER 354

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+RE + P+++TF  +L AC   G +++G Q    + ++ G + +      I ++  + G
Sbjct: 355 MRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV-GFELDRSLQTAIFNMYAKCG 413

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
            + EAE+V S M    N   W + L    K G++   E   K+  EM  +N
Sbjct: 414 SIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAE---KVFSEMPTRN 460



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 155/321 (48%), Gaps = 22/321 (6%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N++I+ +++F     A ++F  M  +D +TWS++I  Y  + +  +A + F  M    I+
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P +     +L AC +   L++G  IH  VK   +  D  + TAL+ MY+KCG + +A +V
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F  M  + V +W A+I   A H + ++A EL+ +M +  + P+ +TF  +L++C     +
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEAL 274

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           +RG +  +++ +  G++ ++     ++ +  +   + EA E+   M  + +   W A++ 
Sbjct: 275 NRGRRIHSHISE-RGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIA 332

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              + G                      D+V ++ + M+  G+  N  + M  +      
Sbjct: 333 GYAQSG---------------YKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC--- 374

Query: 534 FRTGDGSHPQVKEIYLMLKKI 554
             T  G+  Q ++I+  L K+
Sbjct: 375 --TAHGALEQGRQIHAELSKV 393



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           K G  +EA+++   +++  +        CV+  CA     + G  +H  +    + +D  
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           LG +L++ Y+K   +  A +VF  M +++V TW++MI   A +     A + F +M    
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P+RITF  +L AC +  ++++G +  T ++ M G++ +V     ++ +  + G ++ A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAM-GMETDVAVATALITMYSKCGEISVA 211

Query: 453 EEVISSMPMEPNAAVWEALLGACRKH 478
            EV   M  E N   W A++ A  +H
Sbjct: 212 CEVFHKMT-ERNVVSWTAIIQANAQH 236


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 375/688 (54%), Gaps = 103/688 (14%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           MS  +    L  H+ P   S+ +  T+    + I  +  T    S   LKQ HA  L++ 
Sbjct: 11  MSIGLLVHPLSPHIPPA--SSPSASTAGNHHQRIFSLAETCSDMS--QLKQLHAFTLRTT 66

Query: 61  HFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH-NEPWR 116
           + ++    ++ G +++   +S FS+   A +VF+S+   + F+WN+++RAC    +    
Sbjct: 67  YPEEPATLFLYGKILQ--LSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEE 124

Query: 117 VISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
              LY +M+   +S P+K T+P V KAC+      EG QVH  +VK+             
Sbjct: 125 AFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH------------- 171

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                             G   DV   N LI  Y  CG ++                   
Sbjct: 172 ------------------GFGGDVYVNNGLIHLYGSCGCLD------------------- 194

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
                        ARK+F+EM ++  ++W+++ID   + G Y  AL++F EMQR   +P 
Sbjct: 195 ------------LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPD 241

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWK 352
            + +  VL+ACA LG+L  G W H  + R     + +D ++  +L++MY KCG L MA +
Sbjct: 242 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 301

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM--QREKMRPDRITFACVLSACAHA 410
           VF+ M+ +++ +WNAMI G A HGRA++A+  F +M  +RE +RP+ +TF  +L AC H 
Sbjct: 302 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 361

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G +++G Q    M + Y I+P +EHYGCIVDL+ RAGY+ EA +++ SMPM+P+A +W +
Sbjct: 362 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 421

Query: 471 LLGACRKHG-EVEFGERLGKILLEMEPQNR---------------------RCDDVAKMR 508
           LL AC K G  VE  E + + ++  +  N                      R +DV  +R
Sbjct: 422 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 481

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           KLM E GI+  PG S I++NG+ HEF  GD SHPQ K+IY  LK I ++L+  GY P+ S
Sbjct: 482 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 541

Query: 569 QV-LFD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           Q  L D  ++  KE + + HSE+LAIAFG IN  P   IR+ KNLRVC DCH  TKLISK
Sbjct: 542 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 601

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VF  +IIVRDRVR+HHF++G CSC D+W
Sbjct: 602 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/641 (38%), Positives = 361/641 (56%), Gaps = 99/641 (15%)

Query: 48  HLKQAHAVILKSGHFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
            LKQ HA  L++ + ++    ++ G +++   +S FS+   A +VF+S+   + F+WN++
Sbjct: 120 QLKQLHAFTLRTTYPEEPATLFLYGKILQ--LSSSFSDVNYAFRVFDSIENHSSFMWNTL 177

Query: 105 LRACL-EHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +RAC  + +       LY +M+   +S P+K T+P V KAC+      EG QVH  +VK+
Sbjct: 178 IRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH 237

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G                 FG               DV   N LI  Y  CG ++      
Sbjct: 238 G-----------------FG--------------GDVYVNNGLIHLYGSCGCLD------ 260

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                     ARK+F+EM ++  ++W+++ID   + G Y  AL+
Sbjct: 261 -------------------------LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQ 295

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVD 339
           +F EMQR   +P  + +  VL+ACA LG+L  G W H  + R     + +D ++  +L++
Sbjct: 296 LFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIE 354

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM--QREKMRPDR 397
           MY KCG L MA +VF+ M+ +++ +WNAMI G A HGRA++A+  F +M  +RE +RP+ 
Sbjct: 355 MYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNS 414

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +TF  +L AC H G +++G Q    M + Y I+P +EHYGCIVDL+ RAGY+ EA +++ 
Sbjct: 415 VTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVM 474

Query: 458 SMPMEPNAAVWEALLGACRKHG-EVEFGERLGKILLEMEPQNR----------------- 499
           SMPM+P+A +W +LL AC K G  VE  E + + ++  +  N                  
Sbjct: 475 SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVY 534

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R +DV  +RKLM E GI+  PG S I++NG+ HEF  GD SHPQ K+IY  LK I 
Sbjct: 535 ASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVID 594

Query: 556 EKLKMEGYSPNSSQV-LFD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           ++L+  GY P+ SQ  L D  ++  KE + + HSE+LAIAFG IN  P   IR+ KNLRV
Sbjct: 595 DRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRV 654

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH  TKLISKVF  +IIVRDRVR+HHF++G CSC D+W
Sbjct: 655 CNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/703 (34%), Positives = 392/703 (55%), Gaps = 60/703 (8%)

Query: 4   KVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQ 63
           KV   DL   ++ E   A     S+F+  ++L + ++      Q  +  H  ++K+G   
Sbjct: 143 KVEAFDLFRSMRLEGWKA-----SQFTLGSVLRVCSSLGLI--QTGEMIHGFVVKNGFEG 195

Query: 64  DHYVSGTLVKCHANSR-FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           + +V   LV  +A  +  S  E   K      K +V +W +++    ++ + ++ +  + 
Sbjct: 196 NVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHV-LWTAMVTGYAQNGDGYKAVEFFR 254

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
            M     + N++T+PT+  ACS   A   G QVH  +VK+G   +V+V+S+ + MYA  G
Sbjct: 255 YMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG 314

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN------------- 229
            +  A+ +L+     DV+ WN+L+ G+++ G  E A  LFK+   +N             
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 230 ---TGSYN---------------------AMISGFARFGRFEEARKLFNEMNDKDEITWS 265
               GS N                     A++  +A+ G  + A  +F +M +KD I+W+
Sbjct: 375 CCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           +++ GY ++  ++E+L++F +M+   + P +F+++ +L+ACA L  L+ G  +H    ++
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +     +  +LV MYAKCG LD A  +F  M++K+V TW A+I G A +G+  ++++ +
Sbjct: 495 GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFY 554

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
             M     RPD ITF  +L AC+HAG++D G +    M ++YGI P  EHY C++DL GR
Sbjct: 555 DAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGR 614

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------- 498
           +G L EA++++  M ++P+A VW++LL ACR H  +E  ER    L E+EP N       
Sbjct: 615 SGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVML 674

Query: 499 -------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                  R+ +DVAK+RKLMK +GI   PG S +++N  ++ F + D  HP+  EIY  +
Sbjct: 675 SNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKI 734

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
            +II ++K  GY P+ S  L D+D+E KE    YHSEKLA+AFG +   P A IR+ KNL
Sbjct: 735 DEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNL 794

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVC DCHSA K IS+VF R II+RD   +HHFR G+CSC D+W
Sbjct: 795 RVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N L++   K G +  A++LF     K+  S+N MIS +   GR  EAR+LF+  + K  I
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           TWS+II GY K G   EA ++F  M+ +  K  +F L  VL  C+SLG +  G  IH  V
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADD 380
            +N    +  + T LVDMYAKC  +  A  +F+ ++   K    W AM+ G A +G    
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+E F  M  + +  ++ TF  +L+AC+       G Q   ++ +  G    V     +V
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALV 307

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500
           D+  + G L  A+ ++ +M  + +   W +L+    +HG  E   RL K    M  +N +
Sbjct: 308 DMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHGLEEEALRLFK---NMHGRNMK 363

Query: 501 CDD 503
            DD
Sbjct: 364 IDD 366


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/688 (36%), Positives = 375/688 (54%), Gaps = 103/688 (14%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           MS  +    L  H+ P   S+ +  T+    + I  +  T    S   LKQ HA  L++ 
Sbjct: 20  MSIGLLVHPLSPHIPPA--SSPSASTAGNHHQRIFSLAETCSDMS--QLKQLHAFTLRTT 75

Query: 61  HFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH-NEPWR 116
           + ++    ++ G +++   +S FS+   A +VF+S+   + F+WN+++RAC    +    
Sbjct: 76  YPEEPATLFLYGKILQ--LSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEE 133

Query: 117 VISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
              LY +M+   +S P+K T+P V KAC+      EG QVH  +VK+             
Sbjct: 134 AFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH------------- 180

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                             G   DV   N LI  Y  CG ++                   
Sbjct: 181 ------------------GFGGDVYVNNGLIHLYGSCGCLD------------------- 203

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
                        ARK+F+EM ++  ++W+++ID   + G Y  AL++F EMQR   +P 
Sbjct: 204 ------------LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPD 250

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWK 352
            + +  VL+ACA LG+L  G W H  + R     + +D ++  +L++MY KCG L MA +
Sbjct: 251 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 310

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM--QREKMRPDRITFACVLSACAHA 410
           VF+ M+ +++ +WNAMI G A HGRA++A+  F +M  +RE +RP+ +TF  +L AC H 
Sbjct: 311 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 370

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G +++G Q    M + Y I+P +EHYGCIVDL+ RAGY+ EA +++ SMPM+P+A +W +
Sbjct: 371 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 430

Query: 471 LLGACRKHG-EVEFGERLGKILLEMEPQNR---------------------RCDDVAKMR 508
           LL AC K G  VE  E + + ++  +  N                      R +DV  +R
Sbjct: 431 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 490

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           KLM E GI+  PG S I++NG+ HEF  GD SHPQ K+IY  LK I ++L+  GY P+ S
Sbjct: 491 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 550

Query: 569 QV-LFD-IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           Q  L D  ++  KE + + HSE+LAIAFG IN  P   IR+ KNLRVC DCH  TKLISK
Sbjct: 551 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 610

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VF  +IIVRDRVR+HHF++G CSC D+W
Sbjct: 611 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/627 (35%), Positives = 345/627 (55%), Gaps = 51/627 (8%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYP 137
           +F   E A KVF+ + + +  +WN+++    ++      I ++ +++    ++ +  T  
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            +  A +  +  + G+Q+H+   K G     +V +  I +Y+  G +  A  +  +  + 
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRP 285

Query: 198 DVICWNALIDGYLKCGDIEGAKELFK---------------------------------- 223
           D++ +NA+I GY   G+ E +  LFK                                  
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYS 345

Query: 224 --STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
             S    +T    A+ + +++    E ARKLF+E  +K   +W+A+I GYT++G  ++A+
Sbjct: 346 LKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F EMQ  +  P    ++C+L+ACA LGAL  G W+HD V+         + TAL+ MY
Sbjct: 406 SLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +  A ++F+ M  K   TWN MI G  +HG   +A+ +F +M    + P  +TF 
Sbjct: 466 AKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFL 525

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
           CVL AC+HAG++  G +    M   YG +P V+HY C+VD+LGRAG+L  A + I +MP+
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPI 585

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +P  +VWE LLGACR H +      + + L E++P N              R     A +
Sbjct: 586 QPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+  K+R +   PG ++I++    H F +GD SHPQVK I+  L+K+  K++  GY P +
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPET 705

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L D++EEE+E   K HSE+LAIAFG I T+PG  IR+IKNLRVC DCH+ATKLISK+
Sbjct: 706 ELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKI 765

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +R I+VRD  R+HHF++G CSC D+W
Sbjct: 766 TERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 224/506 (44%), Gaps = 53/506 (10%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           S+   LD+   K  TS  HL Q HA I+  G   D  +   L +    S       A  +
Sbjct: 19  SKNNFLDLF--KRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQ--RLSDLGAIYYARDI 74

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEA 148
           F SV +P+VF++N ++R    +  P   +++++ +    D KPN  TY     A S    
Sbjct: 75  FLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRD 134

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           D+ G  +H   + +G   ++ + S+ ++MY  F  V  AR++ D   + D I WN +I G
Sbjct: 135 DRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG 194

Query: 209 YLKCGDIEGAKELFKSTKDKN----------------------------------TGSYN 234
           Y K      + ++F+   +++                                  TG Y+
Sbjct: 195 YRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254

Query: 235 ------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                   IS +++ G+ + A  LF E    D + ++A+I GYT +G  + +L +F E+ 
Sbjct: 255 HDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELM 314

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
               K +   L  ++     L  +     IH +  +++      + TAL  +Y+K   ++
Sbjct: 315 LSGAKLKSSTLVSLVPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIE 371

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A K+F++   K + +WNAMI G   +G  +DAI LF +MQ  +  P+ +T  C+LSACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACA 431

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
             G +  G + +  + +    +  +     ++ +  + G +AEA  +   MP + N   W
Sbjct: 432 QLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTW 489

Query: 469 EALLGACRKHGEVEFGERLGKILLEM 494
             ++     HG    G+    I  EM
Sbjct: 490 NTMISGYGLHGH---GQEALTIFSEM 512



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LKS       VS  L   +  S+ +  E A K+F+   + ++  WN+++    ++ 
Sbjct: 342 HGYSLKSNFLSHTSVSTALTTVY--SKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ISL+ EM   +  PN  T   +  AC+   A   G  VH  V        ++V +
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG- 231
           + I MYA  G + +AR++ D   K + + WN +I GY   G  + A  +F    +     
Sbjct: 460 ALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAP 519

Query: 232 ---SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
              ++  ++   +  G  +E  ++FN M  +         ++ ++D   + G+ + AL+ 
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQF 579

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
              M    I+P   V   +L AC
Sbjct: 580 IEAM---PIQPGPSVWETLLGAC 599


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 341/573 (59%), Gaps = 46/573 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +V  W S++ A    N     +  +  M+     P++ T   V  AC+  +  + G  +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
             V + G+                              S++ V+   ALID Y KCGD  
Sbjct: 263 LLVEEKGM----------------------------PTSENLVV---ALIDMYAKCGDFG 291

Query: 217 GAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
            A+++F +  +     S+NA+I G+ + G  + AR LF+EM  +D IT+++++ GY   G
Sbjct: 292 HAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSG 351

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             +EAL +F  M+R  ++   F +  +L ACASLGAL QG  +H  +++  +  D  LGT
Sbjct: 352 QLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGT 411

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+DMY KCGR+D A  VF+ M  ++V TW AMI GLA +G    A+E F++M+ +  +P
Sbjct: 412 ALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQP 471

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           + +++  VL+AC+H+ +++ G      M+ +Y I P++EHYGC++DLLGR+G L EA ++
Sbjct: 472 NSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 531

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRC 501
           + +MP++PNA +W ++L ACR H  ++  +   + LL++EP               +R+ 
Sbjct: 532 VKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQW 591

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++ +K+R LM+ER +K   G S I V G +H+F   D SHP++ EI  ML++I  +LK  
Sbjct: 592 ENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSL 651

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GYSP +SQ+  D+DEEEKE A   HSEKLAIAFG IN  P   + + KNLRVCEDCHSA 
Sbjct: 652 GYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAI 711

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLIS+++ R+IIVRDR R+HHFR G CSCNDFW
Sbjct: 712 KLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 219/490 (44%), Gaps = 77/490 (15%)

Query: 51  QAHAVILKSGHFQDH-----YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           + HA +  SGH   H     ++  +LV C       +   AL +F+ +  P+ F++++ L
Sbjct: 17  ELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL-HLRYALHLFDRM-PPSTFLFDTAL 74

Query: 106 RACLEH-NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           RAC    ++P R   L+  M     +P+ FT+  +FK CS + +    +          L
Sbjct: 75  RACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK-CSSSSSRPHSLL---------L 124

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           C  +H         AC       R +L   +       N+LI  Y++ G    A+  F  
Sbjct: 125 CTMLHA--------ACL------RTMLPSAAP---FVSNSLIHMYIRLGLAADARRAFDE 167

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              K+  ++  +ISG A+ G   + + L ++   +D I+W+++I  Y++    +EA+  F
Sbjct: 168 IHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCF 227

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M    I P +  +  VL+ACA L  L+ G  +H  V+   +     L  AL+DMYAKC
Sbjct: 228 KTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKC 287

Query: 345 --------------------------------GRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
                                           G +D+A  +F++M+++++ T+N+M+ G 
Sbjct: 288 GDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
              G+  +A+ LF  M+R  +R D  T   +L+ACA  G + +G +AL    +   ++ +
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG-RALHACIEQRLVEAD 406

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +     ++D+  + G + EA  V   M  + +   W A++     +G       +GK  L
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMIAGLAFNG-------MGKAAL 458

Query: 493 EMEPQNRRCD 502
           E   Q  RCD
Sbjct: 459 EHFYQ-MRCD 467



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + ++A  +F+ +   ++  +NS++   +   +    + L+  M   D + + FT   +  
Sbjct: 321 HVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLT 380

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+   A ++G  +HA + +  +  D+++ ++ + MY   G V++A  +     K DV  
Sbjct: 381 ACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHT 440

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEM- 256
           W A+I G    G  + A E F   +      N+ SY A+++  +      E R  F+EM 
Sbjct: 441 WTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMR 500

Query: 257 ---NDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              N   +I  +  +ID   + G   EA+++   M    I+P   + + +L+AC
Sbjct: 501 ILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/661 (33%), Positives = 361/661 (54%), Gaps = 55/661 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q  KQ H+ +LK+G   D+   G+L+  +   +  + E A  +FN   + NV +WN +L 
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYV--KCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + ++  +   ++ +M      PNKFTYP + + C+ T   + G Q+H+  +KNG   
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D++V    I MY+ + C++KAR+IL+   K DV+ W ++I GY++    E A   FK  +
Sbjct: 380 DMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQ 439

Query: 227 D---------------------------------------KNTGSYNAMISGFARFGRFE 247
           D                                        +   +N +++ +AR GR E
Sbjct: 440 DCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSE 499

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA  LF E++ KDEITW+ +I G+ +   Y++AL VF +M +   K   F     ++A A
Sbjct: 500 EAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALA 559

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L  + QG  +H    +     +  +  AL+ +Y KCG ++ A  +F +M ++   +WN 
Sbjct: 560 NLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNT 619

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I   + HGR  +A++LF +M++E ++P+ +TF  VL+AC+H G+++ GL     M  +Y
Sbjct: 620 IITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVY 679

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           G++P  +HY C+VD+LGRAG L  A   +  MP+  NA +W  LL AC+ H  +E GE  
Sbjct: 680 GLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELA 739

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K LLE+EP +               +  +  ++RK+MK+RGI+  PG S I+V   +H 
Sbjct: 740 AKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHA 799

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HP   +IY  L ++ ++L   GY   +  +  + ++E+K+     HSEKLA+A
Sbjct: 800 FFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVA 859

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG +   P   +RVIKNLRVC+DCHS  K  S+V +R+I++RD  R+HHF +G CSC D+
Sbjct: 860 FGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDY 919

Query: 654 W 654
           W
Sbjct: 920 W 920



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 187/448 (41%), Gaps = 46/448 (10%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  + + HA  +  G   D  +   L+  +A +       A +VF  +   +   W ++L
Sbjct: 59  WPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGL--VWQARQVFKELSSRDHVSWVAML 116

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               +         LYS+M      P  +   +V  AC+  +   +G  +HA V K   C
Sbjct: 117 SGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC 176

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            +  V ++ I +Y  FG    A ++  D    D + +N LI G+ +CG  E A ++F   
Sbjct: 177 SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM 236

Query: 226 --------------------------KDKNTGSY-------------NAMISGFARFGRF 246
                                     K K   SY              +++  + + G  
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +FN  +  + + W+ ++  Y +     ++ E+F +MQ   I P KF   C+L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G ++ G  IH    +N    D  +   L+DMY+K   LD A K+ E ++ ++V +W 
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQ 424
           +MI G   H   ++A+  F +MQ   + PD I  A   SACA    + +GLQ  A  Y+ 
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS 476

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
              G   ++  +  +V+L  R G   EA
Sbjct: 477 ---GYAADISIWNTLVNLYARCGRSEEA 501



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 169/350 (48%), Gaps = 53/350 (15%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I  +A+ G   +AR++F E++ +D ++W A++ GY + G  KEA  ++++M    + 
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  +VLS VL+AC       QG  IH  V + + C +  +G AL+ +Y   G   +A +V
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F DM   +  T+N +I G A  G  + A+++F +MQ   +RPD +T A +L+ACA  G +
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDL------------------------------- 442
            +G Q  +Y+ +  G+  +    G ++DL                               
Sbjct: 262 QKGKQLHSYLLKA-GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 443 LGRAGYLAEAEEVISSMP---MEPNAAVWEALLGACRKHGEVEFGERL------------ 487
            G+   LA++ E+   M    + PN   +  +L  C   G++E GE++            
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 488 ---GKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
                +L++M  + R  D   K+ +++++R + +   +SMI    V H+F
Sbjct: 381 MYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS--WTSMI-AGYVQHDF 427



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 177/368 (48%), Gaps = 47/368 (12%)

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +++HA  V  GL  D  + +  I +YA  G V +ARQ+  + S  D + W A++ GY + 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 213 GDIEGAKELFKS--------------------TKDK-------------------NTGSY 233
           G  + A  L+                      TK K                    T   
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+I+ +  FG F+ A ++F +M   D +T++ +I G+ + G+ + AL++F+EMQ   ++
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P    ++ +LAACAS+G L +G  +H ++ +  +  D +   +L+D+Y KCG ++ A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADD---AIELFFKMQREKMRPDRITFACVLSACAHA 410
           F       V  WN M   L  +G+  D   + E+F +MQ   + P++ T+ C+L  C   
Sbjct: 303 FNLGDRTNVVLWNLM---LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCT 359

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G I+ G Q +  +    G + ++   G ++D+  +   L +A +++  M  + +   W +
Sbjct: 360 GQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL-EMLEKRDVVSWTS 417

Query: 471 LLGACRKH 478
           ++    +H
Sbjct: 418 MIAGYVQH 425



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 187/393 (47%), Gaps = 50/393 (12%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           ++ AT I  ++F+   IL      C    +  +Q H++ +K+G   D YVSG L+  +  
Sbjct: 336 QMQATGIHPNKFTYPCILR--TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY-- 391

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S++   + A K+   + K +V  W S++   ++H+     ++ + EM      P+     
Sbjct: 392 SKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLA 451

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +   AC+  +A ++G+Q+HA V  +G   D+ + ++ + +YA  G   +A  +  +    
Sbjct: 452 SAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK 511

Query: 198 DVICWNALIDGY-----------------------------------LKCGDIEGAKEL- 221
           D I WN LI G+                                       DI+  K++ 
Sbjct: 512 DEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K+     T   NA+IS + + G  E+A+ +F+EM+ ++E++W+ II   ++ G   
Sbjct: 572 GRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGL 631

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TA 336
           EAL++F++M+++ +KP       VLAAC+ +G +++G+     +  N   ++ +      
Sbjct: 632 EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS-NVYGLNPIPDHYAC 690

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           +VD+  + G+LD A +  ++M +    T NAMI
Sbjct: 691 VVDILGRAGQLDRARRFVDEMPI----TANAMI 719


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 344/580 (59%), Gaps = 55/580 (9%)

Query: 99  FVWNSVLRACLEHNEPWR---VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           FVWN ++RA + +  P +    IS+Y  M      P+  T+P +  +         G + 
Sbjct: 24  FVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRT 83

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           HA ++  GL  D  V++S + MY+                                CGD+
Sbjct: 84  HAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCGDL 112

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
             A  +F  +  K+  ++N++++ +A+ G    ARKLF+EM +++ I+WS +I+GY   G
Sbjct: 113 SSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCG 172

Query: 276 YYKEALEVFNEMQRDK-----IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            YKEAL++F EMQ  K     + P KF +S VL+AC  LGAL+QG W+H ++ +  + +D
Sbjct: 173 KYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEID 232

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            VLGTAL+DMYAKCG L+ A +VF+ +   K+V  ++AMI  LAM+G  D+  ++F +M 
Sbjct: 233 IVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMT 292

Query: 390 -REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
               + P+ +TF  +L AC H G+I++G      M + +GI P ++HYGC+VDL GR+G 
Sbjct: 293 TSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGL 352

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------- 499
           + EAE  I+SMPMEP+  +W +LL   R  G+++  E   K L+E++P N          
Sbjct: 353 IKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNV 412

Query: 500 -----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                R  +V ++R  M+ +GIK  PG S ++V GV+HEF  GD S  + + IY ML++I
Sbjct: 413 YAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEI 472

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
           +++L+  GY  ++ +VL D++E++KE A  YHSEKLAIAF  + T PG  +R+IKNLR+C
Sbjct: 473 MQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 532

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            DCH   K+ISK+F R+I+VRD  R+HHF +G CSC DFW
Sbjct: 533 GDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 26/296 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-----GVDSKPNKFTYPTVF 140
           A K+F+ + + NV  W+ ++   +   +    + L+ EM       V   PNKFT  TV 
Sbjct: 146 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVL 205

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDV 199
            AC    A ++G  VH+++ K G+  D+ + ++ I MYA  G + +A+++ D  GSK DV
Sbjct: 206 SACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDV 265

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTK-----DKNTGSYNAMISGFARFGRFEEARKLFN 254
             ++A+I      G  +   ++F         + N+ ++  ++      G   + +  F 
Sbjct: 266 KAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFK 325

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M ++  IT     +  ++D Y + G  KEA      M    ++P   +   +L+    L
Sbjct: 326 MMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM---PMEPDVLIWGSLLSGSRML 382

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKVFEDMKMKEV 362
           G +       +   +  I +D +   A V   ++YAK GR     ++  +M++K +
Sbjct: 383 GDIKTC----EGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGI 434


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 324/520 (62%), Gaps = 17/520 (3%)

Query: 152 GVQVHAHVVKNGLCG-DVHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDG 208
           G  +HA  +++G    D+ V+++ ++MYA    G +  AR   D+  + DV   N ++  
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
           Y+  G++  A+++F     ++  S+N MI G+A  G    AR++F+   D+D  +WS++I
Sbjct: 126 YVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMI 185

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             Y K    KEALE++ EM+   + P    +  VL+AC+++GAL  G  +H  V+ N + 
Sbjct: 186 SAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE 245

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
           VD  LGTALVDMYAKCG ++ + KVF  M +K+V TW++MI GLA HG   DA+ LF +M
Sbjct: 246 VDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEM 305

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             + ++P+ ITF  VL AC H G+++ G +  + M  ++G+ P +EHYGC+VDLLGRAG+
Sbjct: 306 ISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGH 365

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------------ 496
           + EA E+I SM  +P+  +W  LLGACR H  VE  E     L  ++P            
Sbjct: 366 VEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNI 425

Query: 497 --QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
             Q    + VA+MRK ++   I+  PG S I+    +HEF +GD SHP+++EIY ML+++
Sbjct: 426 YAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEM 485

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
           +++L+  GY P +S VL DIDE+ K+ A   HSEKLAIAFG + T   +T+R+ KNLR C
Sbjct: 486 MDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRAC 545

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           EDCHSA KLIS  + R +IVRDR R+HHF  G+CSC D+W
Sbjct: 546 EDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 12/241 (4%)

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF 134
           H  +   +  +A ++F+     + F W+S++ A  +       + L+ EM      P+  
Sbjct: 155 HGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCI 214

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           +  +V  ACS   A   G +VH  V  N +  D+ + ++ + MYA  G +  + ++    
Sbjct: 215 SMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAM 274

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEAR 250
              DV+ W+++I G    G    A  LF     +    N  ++  ++      G   + +
Sbjct: 275 PVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGK 334

Query: 251 KLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           K F+ M+D   +      +  ++D   + G+ +EA+E+   M     KP   +   +L A
Sbjct: 335 KYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMT---FKPDPIIWRTLLGA 391

Query: 306 C 306
           C
Sbjct: 392 C 392



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 60/232 (25%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E +LKVF+++   +V  W+S++     H      +SL+SEM+    +PN+ T+  V  
Sbjct: 263 DIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLI 322

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDG 194
           AC+      +G +  + +       DVH     ++ Y C        G V +A +++   
Sbjct: 323 ACTHVGLVNDGKKYFSSM------SDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSM 376

Query: 195 S-KSDVICWNALI--------------------------DG--------YLKCGDIEGAK 219
           + K D I W  L+                          DG        Y +    EG  
Sbjct: 377 TFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVA 436

Query: 220 ELFKSTKDKNT------------GSYNAMISGFARFGRFEEARKLFNEMNDK 259
           E+ K+ + +N              + +  +SG     R EE  K+  EM D+
Sbjct: 437 EMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDR 488


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/653 (35%), Positives = 369/653 (56%), Gaps = 59/653 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  + K G   D +V+ +LV  H  SR+   ++A KVF  +   +V  WN+++    
Sbjct: 141 KKVHCCVFKMGFEDDVFVAASLV--HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + + + M G   K +  T  ++   C+ ++    GV +H HV+K+GL  DV 
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVF 258

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           V ++ I MY+ FG +  A+ + D     D++ WN++I  Y +  D   A   FK  +   
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                DK+    NA+++ +A+ G    A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ--RDKIKPRKFVLSCVLAACA 307
             +F+++  KD I+W+ ++ GYT++G   EA++ +N M+  RD I P +     ++ A +
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYS 437

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            +GAL QG+ IH  + +NS+ +D  + T L+D+Y KCGRL+ A  +F ++       WNA
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I  L +HGR ++A++LF  M  E+++ D ITF  +LSAC+H+G++D G +    MQ+ Y
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P ++HYGC+VDLLGRAGYL +A E++ +MP++P+A++W ALL AC+ +G  E G   
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              LLE++ +N               + + V K+R L ++RG++  PG S + V      
Sbjct: 618 SDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F TG+ +HP+  EIY  LK +  K+K  GY P+ S V  DI+E+EKE     HSE+LAIA
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIA 737

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           FG I+T P + IR+ KNLRVC DCH+ATK IS++ +R+I+VRD  R+HHF++G
Sbjct: 738 FGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 240/492 (48%), Gaps = 60/492 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA++L  G  Q+  +S  L+  +      +  L+   F+ +HK N+F WNS++ A +
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYIHKKNIFSWNSIISAYV 96

Query: 110 ---EHNEPWRVIS-LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              +++E    ++ L+S   G   +P+ +T+P + KAC ++  D  G +VH  V K G  
Sbjct: 97  RFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC-VSLVD--GKKVHCCVFKMGFE 153

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV V +S + +Y+ +G ++ A ++  D    DV  WNA+I G+ + G+  GA  +    
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM 213

Query: 226 K---------------------------------------DKNTGSYNAMISGFARFGRF 246
           K                                       D +    NA+I+ +++FGR 
Sbjct: 214 KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++A+ +F++M  +D ++W++II  Y ++     AL  F  MQ   I+P    +  + +  
Sbjct: 274 QDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIF 333

Query: 307 ASLGALDQGI---WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + L   DQ I    +   ++R  +  D V+G ALV+MYAK G ++ A  VF+ +  K+  
Sbjct: 334 SQLS--DQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQ--AL 420
           +WN ++ G   +G A +AI+ +  M+      P++ T+  ++ A +H G + +G++  A 
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
                +Y    +V    C++DL G+ G L +A  +   +P + +   W A++ +   HG 
Sbjct: 452 LIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGR 507

Query: 481 VEFGERLGKILL 492
            E   +L K +L
Sbjct: 508 GEEALQLFKDML 519



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%)

Query: 202 WNALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           +NAL +    C ++   K+L        K +N      +I+ +   G    +R  F+ ++
Sbjct: 25  FNALFNS---CVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQR----DKIKPRKFVLSCVLAACASLGALD 313
            K+  +W++II  Y + G Y EA+   N++        ++P  +    +L AC SL    
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV--- 138

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G  +H  V +     D  +  +LV +Y++ G LD+A KVF DM +K+V +WNAMI G  
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFC 198

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPE 432
            +G A  A+ +  +M+ E ++ D IT A +L  CA +  +  G+  L ++  + +G+D +
Sbjct: 199 QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV--LIHLHVLKHGLDSD 256

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           V     ++++  + G L +A+ V   M +  +   W +++ A  ++ +     R  K
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFK 312


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 373/660 (56%), Gaps = 58/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  + K G   D +V+ +L+  H  SRF    +A  +F+ +   ++  WN+++   +
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLI--HMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + +  EM       +  T  ++   C+          +H +V+K+GL  ++ 
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ I MYA FG +  A+++       DV+ WN++I  Y +  D   A+  F       
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 223 ----------------KSTKDKNTGSY-----------------NAMISGFARFGRFEEA 249
                           +S   KN+ S                  NA++  +A+ G  + A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
            K+FN +  KD ++W+ +I GYT++G   EA+EV+  M+   +IK  +     +LAA A 
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAH 489

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GAL QG+ IH H+ + ++ +D  +GT L+D+Y KCGRL  A  +F  +  +    WNA+
Sbjct: 490 VGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAI 549

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I    +HG  + A++LF +MQ E ++PD +TF  +LSAC+H+G++D G      MQ+ YG
Sbjct: 550 ISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YG 608

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDLLGRAG+L  A + I  MP+ P+A++W ALLGACR HG +E G+   
Sbjct: 609 IKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFAS 668

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L E++ +N               + + V K+R L +ERG+K  PG S I+VN  +  F
Sbjct: 669 DRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIF 728

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            TG+ SHP+ KEIY  L+ +  K+K  GY P+ S VL D++E+EKE     HSE+LAIAF
Sbjct: 729 YTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 788

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T P + IR+ KNLRVC DCH+ATK IS++ +R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 789 GIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 250/503 (49%), Gaps = 52/503 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA+++ SG  Q +++S  LV  +A+    +  L+   F+ + + +V+ WNS++ A +
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYAS--LGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +      I  + +++ V   + + +T+P V KAC   +   +G ++H  V K G   DV
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDV 207

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-- 226
            V +S I MY+ FG V  AR + DD    D+  WNA+I G ++ G+   A ++    +  
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 227 --------------------DKNTGSY-----------------NAMISGFARFGRFEEA 249
                               D +T +                  NA+I+ +A+FG   +A
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDA 327

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           +K+F +M  +D ++W++II  Y ++     A   F +MQ + ++P    L  + +  A  
Sbjct: 328 QKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS 387

Query: 310 GALDQGIWIHDHVKRNSICVDA-VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
                   +H  + R    ++A V+G A++DMYAK G +D A KVF  + +K+V +WN +
Sbjct: 388 RDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTL 447

Query: 369 IGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           I G   +G A +AIE++  M+   +++ ++ T+  +L+A AH G + +G++   ++ +  
Sbjct: 448 ISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT- 506

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            +  +V    C++DL G+ G L +A  +   +P E +   W A++     HG    GE+ 
Sbjct: 507 NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVP-WNAIISCHGIHGH---GEKA 562

Query: 488 GKILLEMEPQNRRCDDVAKMRKL 510
            K+  EM+ +  + D V  +  L
Sbjct: 563 LKLFREMQDEGVKPDHVTFISLL 585



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 174/388 (44%), Gaps = 41/388 (10%)

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           +K  +  + ++F +C+ T   K   ++HA +V +G      +    + +YA  G V+ +R
Sbjct: 72  AKNEEIDFNSLFDSCTKTLLAK---RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSR 128

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKE---------------------------- 220
              D   + DV  WN++I  Y++ G    A +                            
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL 188

Query: 221 ---------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                    +FK     +     ++I  ++RFG    AR LF++M  +D  +W+A+I G 
Sbjct: 189 VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGL 248

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            ++G   +AL+V +EM+ + I      ++ +L  CA LG +     IH +V ++ +  + 
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +  AL++MYAK G L  A KVF+ M +++V +WN++I     +     A   FFKMQ  
Sbjct: 309 FVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLN 368

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + PD +T   + S  A +           ++ +   +   V     ++D+  + G +  
Sbjct: 369 GLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDS 428

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHG 479
           A +V + +P++ +   W  L+    ++G
Sbjct: 429 AHKVFNLIPVK-DVVSWNTLISGYTQNG 455


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/692 (35%), Positives = 374/692 (54%), Gaps = 59/692 (8%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCH 75
           +E+  + I  +EFS   I  ILN         L ++ H ++LK G   D + +  LV  +
Sbjct: 172 KEMVRSGIMPNEFS---ISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMY 228

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
             S+    E A+ VF  +  P+V  WN+++  C+ H+     + L  EM G  ++PN FT
Sbjct: 229 --SKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFT 286

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +  KAC+     + G Q+H+ ++K     D+      + MY+    ++ AR+  D   
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP 346

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY-------- 233
           K D+I WNALI GY +CGD   A  LF               ST  K+  S         
Sbjct: 347 KKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQ 406

Query: 234 -----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                            N+++  + +    +EA K+F E   +D + ++++I  Y++ G 
Sbjct: 407 IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGD 466

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL+++ +MQ   IKP  F+ S +L ACA+L A +QG  +H H  +     D     +
Sbjct: 467 GEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS 526

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LV+MYAKCG ++ A + F ++  + + +W+AMIGG A HG   +A+ LF +M R+ + P+
Sbjct: 527 LVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPN 586

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            IT   VL AC HAG+++ G Q    M+ M+GI P  EHY C++DLLGR+G L EA E++
Sbjct: 587 HITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELV 646

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------D 502
           +S+P E +  VW ALLGA R H  +E G++  K+L ++EP+                  +
Sbjct: 647 NSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWE 706

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +VAK+RK MK+  +K  PG S I++   ++ F  GD SH +  EIY  L ++ + L   G
Sbjct: 707 NVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAG 766

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           YS      + ++D+ EKE    +HSEKLA+AFG I T PG  IRV KNLR+C DCH+  K
Sbjct: 767 YSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFK 826

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            + K+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 827 FVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 232/497 (46%), Gaps = 58/497 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + HA ++K G  +D  +   LV  ++  R   F  A K+ +   + +V  W+S+L   ++
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCR--RFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      + +++EM  +  K N+FT+P+V KACS+      G +VH   V  G   D  V
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK---CGDIEGA-KELFKST- 225
            ++ + MYA  G ++ +R++     + +V+ WNAL   Y++   CG+  G  KE+ +S  
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 226 ----------------------------------KDKNTGSYNAMISGFARFGRFEEARK 251
                                              D +  S NA++  +++ G  E A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F ++   D ++W+AII G         AL + +EM+    +P  F LS  L ACA++G 
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
            + G  +H  + +     D      LVDMY+KC  +D A + ++ M  K++  WNA+I G
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY---- 427
            +  G   DA+ LF KM  E +  ++ T + VL + A        LQA+   +Q++    
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA-------SLQAIKVCKQIHTISI 412

Query: 428 --GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
             GI  +      ++D  G+  ++ EA ++      E   A + +++ A  ++G+   GE
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA-YTSMITAYSQYGD---GE 468

Query: 486 RLGKILLEMEPQNRRCD 502
              K+ L+M+  + + D
Sbjct: 469 EALKLYLQMQDADIKPD 485



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 179/369 (48%), Gaps = 45/369 (12%)

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +++HAH++K G   D  +++  + +Y+       AR+++D+ S+ DV+ W++L+ GY++ 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 213 GDIEGAKELFKST----------------------KDKNTGS-----------------Y 233
           G +E A  +F                         +D N G                   
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N ++  +A+ G  +++R+LF  + +++ ++W+A+   Y +     EA+ +F EM R  I 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P +F +S +L ACA L   D G  IH  + +  + +D     ALVDMY+K G ++ A  V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+D+   +V +WNA+I G  +H   D A+ L  +M+    RP+  T +  L ACA  G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCI--VDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           + G Q  + + +M   D   + +  +  VD+  +   + +A     SMP + +   W AL
Sbjct: 301 ELGRQLHSSLIKM---DAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356

Query: 472 LGACRKHGE 480
           +    + G+
Sbjct: 357 ISGYSQCGD 365


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 364/634 (57%), Gaps = 80/634 (12%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSRFSNFELALKVFNSVHK 95
           +L +KC+ S + L Q  A  +KS H +D   +  L+  C  +   S+   A  +F+++ +
Sbjct: 36  LLISKCN-SERELMQIQAYAIKS-HQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSE 93

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P++ ++NS+ R       P  V +L+ E++  D  P+ +T+P++ KAC++ +A +EG Q+
Sbjct: 94  PDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQL 153

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           H   +K G+  +V+V  +                               LI+ Y +C D+
Sbjct: 154 HCLSMKLGVDDNVYVCPT-------------------------------LINMYTECEDV 182

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           + A+ +F    +     YNAMI+                               GY +  
Sbjct: 183 DAARCVFDRIVEPCVVCYNAMIT-------------------------------GYARRN 211

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
              EAL +F EMQ   +KP +  L  VL++CA LG+LD G WIH++ K++  C    + T
Sbjct: 212 RPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNT 271

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+DM+AKCG LD A  +FE+M+ K+   W+AMI   A HG+A++++ +F +M+ E ++P
Sbjct: 272 ALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQP 331

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D ITF  +L+AC+H G+++ G +  ++M   +GI P ++HYG +VDLLGRAG+L +A E 
Sbjct: 332 DEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEF 391

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME--------------PQNRRC 501
           I  +P+ P   +W  LL AC  H  +E  E++ + +LE++               +N++ 
Sbjct: 392 IDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKW 451

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           + V  +RK+MK+R     PG S I+VN V+HEF +GDG      +++  L +++++LK+ 
Sbjct: 452 EAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLA 511

Query: 562 GYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           GY P++S V+  D+ ++EKE   +YHSEKLAIAFG +NT PG TIRV+KNLRVC DCHSA
Sbjct: 512 GYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSA 571

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KLIS +F R +++RD  R+HHF +GKCSC DFW
Sbjct: 572 AKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/590 (38%), Positives = 344/590 (58%), Gaps = 21/590 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  +   AL+VF S+       WNS+L     ++     I +  ++     +P+ F+Y  
Sbjct: 17  RSGDLNSALRVFESMTVKTTVTWNSMLAG---YSNRRGKIKVARQLFDRIPEPDIFSY-N 72

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC +  AD E  ++    +      D    ++ I  ++  G +++AR++       +
Sbjct: 73  IMLACYLHNADVESARLFFDQMP---VKDTASWNTMISGFSQNGMMDQARELFLVMPVRN 129

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + WNA+I GY++ GD++ AK+LF+    ++  ++ AMI+GF +FG+ E A K F EM  
Sbjct: 130 SVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPM 189

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K+ +TW+A+I GY ++   +  L++F  M     +P    LS VL  C++L AL  G  +
Sbjct: 190 KNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQV 249

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  + ++ +  +   GT+L+ MY KCG L+ AWK+F  M  K+V TWNAMI G A HG  
Sbjct: 250 HQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAG 309

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           + A+ LF KM+ E M+PD ITF  VLSAC HAG +D G++    M + YG++ + +HY C
Sbjct: 310 EKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTC 369

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGR G L EA ++I  MP +P++A++  LLGACR H  +E  E   K LL ++P++
Sbjct: 370 VVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPES 429

Query: 499 --------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R D VA +R+ MK+  +   PG S I+V  V+HEFR+GD  HP++
Sbjct: 430 AAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPEL 489

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
             I+  L ++  K+++ GY P+    L D+ EE+K+     HSEKLAIA+G I    G  
Sbjct: 490 AFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTP 549

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV KNLRVC DCHSATK IS +  R IIVRD  R+HHFR G+CSC D+W
Sbjct: 550 IRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 154/322 (47%), Gaps = 50/322 (15%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA-RFGRFEEARKL--- 252
           S+VI  N +I  +++ GD+  A  +F+S   K T ++N+M++G++ R G+ + AR+L   
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 253 ----------------------------FNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                       F++M  KD  +W+ +I G++++G   +A E+F
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 285 NEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
             M  R+ +       + +++     G LD    + +     S+    V  TA++  + K
Sbjct: 123 LVMPVRNSVS-----WNAMISGYVESGDLDLAKQLFEVAPVRSV----VAWTAMITGFMK 173

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
            G++++A K FE+M MK + TWNAMI G   + +A++ ++LF +M     RP+  + + V
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSV 233

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDP---EVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           L  C++   +  G Q    + Q+    P    +     ++ +  + G L +A ++   MP
Sbjct: 234 LLGCSNLSALKLGKQ----VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP 289

Query: 461 MEPNAAVWEALLGACRKHGEVE 482
            + +   W A++    +HG  E
Sbjct: 290 -QKDVVTWNAMISGYAQHGAGE 310


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/466 (44%), Positives = 303/466 (65%), Gaps = 15/466 (3%)

Query: 204 ALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           ALID Y KCGDI  A+ +F +  + +    +NA+I G+ + G  + AR LF++M  +D I
Sbjct: 277 ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVI 336

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           T++++I GY   G  ++AL++F +M+R  ++   F +  +L ACASLGAL  G  +H  +
Sbjct: 337 TFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASI 396

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           ++  +  D  LGTAL+DMY KCGR+D A  VF  M  ++V TW AMI GLA +G   DA+
Sbjct: 397 EQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDAL 456

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           E F +M+R+  +P  +T+  VL+AC+H+ ++D G      M+ ++ + P+VEHYGC++DL
Sbjct: 457 ESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDL 516

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ----- 497
           L R+G L EA  ++ +MPM+PNA +W ++L ACR H  ++      + LL++ P+     
Sbjct: 517 LARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVY 576

Query: 498 ---------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                    +R+  D  ++R LM+ERG+K   G S I V G +H+F   D SHP   EI 
Sbjct: 577 VQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIM 636

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
            M+++I  +LK  GYSP +S++  D+DEEEKE A   HSEK+AIAFG I+  P   I ++
Sbjct: 637 AMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIV 696

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLRVCEDCHSA KL+S+++ R+IIVRDR R+HHFR+G CSCNDFW
Sbjct: 697 KNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 234/544 (43%), Gaps = 77/544 (14%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN--SRFSNFELALKVFNSVHKPNVFVWN 102
           S +   Q HA++  SG       +  L+    N  S   +    L +F+ +     F+++
Sbjct: 11  SVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFD 70

Query: 103 SVLRACLEHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           + LRACL+ +      + L   M     +   FT+  VF+ C+                +
Sbjct: 71  TALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGAR-----------AR 119

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            GLC  +H         AC       R +L   +    +  N LI  Y   G  + A+  
Sbjct: 120 AGLCLMLHA--------ACL------RTMLPSAAP---LVANPLIHMYASMGLTDDARRA 162

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           F     K+   +  +I G  R+G  +EAR+L  +  +++ ++W+++I GY++ G   +A+
Sbjct: 163 FDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAV 222

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
             FN M  D + P +  +   L+AC+ L  LD G  +H  V +  I +   L  AL+DMY
Sbjct: 223 YCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMY 282

Query: 342 AKC--------------------------------GRLDMAWKVFEDMKMKEVFTWNAMI 369
           AKC                                G +D+A  +F+ M  ++V T+N+MI
Sbjct: 283 AKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMI 342

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G    GR  DA++LF +M+R  MR D  T   +L+ACA  G +  G +AL    +   +
Sbjct: 343 TGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG-RALHASIEQRIV 401

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           + +V     ++D+  + G + EA  V   M  E +   W A++     +G       +GK
Sbjct: 402 EEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERDVHTWTAMIAGLAFNG-------MGK 453

Query: 490 ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH--EFRTGDGSHPQVKEI 547
             LE   Q +R  D  +   +     +     SS++D  G +H  E R+    HPQV+  
Sbjct: 454 DALESFCQMKR--DGFQPTSVTYIAVLTACSHSSLLD-EGRLHFNEMRSLHKLHPQVEHY 510

Query: 548 YLML 551
             M+
Sbjct: 511 GCMI 514



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 105/237 (44%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +  + ++A  +F+ +   +V  +NS++   +        + L+ +M     + + FT  +
Sbjct: 316 KLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVS 375

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC+   A   G  +HA + +  +  DV++ ++ + MY   G V++A  +     + D
Sbjct: 376 LLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERD 435

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  W A+I G    G  + A E F   K       + +Y A+++  +     +E R  FN
Sbjct: 436 VHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFN 495

Query: 255 EMNDKDEI-----TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EM    ++      +  +ID   + G   EA+ +   M    ++P   +   +L+AC
Sbjct: 496 EMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWGSILSAC 549


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 368/666 (55%), Gaps = 36/666 (5%)

Query: 21  ATNIPTSEFSQKT-------ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           ++++P  E  QK+       +  +L+T  +   + L+  H+ I+      +  +   L++
Sbjct: 25  SSSLPKLELDQKSPQETVFLLGQVLDT--YPDIRTLRTVHSRIILEDLRCNSSLGVKLMR 82

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
            +A+    +   A KVF+ + + NV + N ++R+ + +      + ++  M G + +P+ 
Sbjct: 83  AYAS--LKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDH 140

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +T+P V KACS +     G ++H    K GL   + V +  + MY   G +++AR +LD+
Sbjct: 141 YTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDE 200

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG--RFE 247
            S+ DV+ WN+L+ GY +    + A E+ +  +      + G+  +++   +        
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 260

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
             + +F +M  K  ++W+ +I  Y K+    EA+E+++ M+ D  +P    ++ VL AC 
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
              AL  G  IH +++R  +  + +L  AL+DMYAKCG L+ A  VFE+MK ++V +W A
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI      GR  DA+ LF K+Q   + PD I F   L+AC+HAG+++ G      M   Y
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 440

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P +EH  C+VDLLGRAG + EA   I  M MEPN  VW ALLGACR H + + G   
Sbjct: 441 KITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLA 500

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L ++ P+                R ++V  +R +MK +G+K NPG+S ++VN +IH 
Sbjct: 501 ADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHT 560

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SHPQ  EIY  L  +++K+K  GY P+S   L D++EE+KET    HSEKLAI 
Sbjct: 561 FLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIV 620

Query: 594 FGFINT-----DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           F  +NT     D   TIR+ KNLR+C DCH A KLIS++  R+II+RD  R+H FR G C
Sbjct: 621 FALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVC 680

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 681 SCGDYW 686


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 346/580 (59%), Gaps = 55/580 (9%)

Query: 99  FVWNSVLRACLEH-NEPWR--VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           F+WN ++RA + + + P R   IS+Y  M      P+  T+P +  +         G + 
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           HA ++  GL  D  V++S + MY+                                CGD+
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCGDL 113

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
             A+ +F  +  K+  ++N++++ +A+ G  ++ARKLF+EM +++ I+WS +I+GY   G
Sbjct: 114 RSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCG 173

Query: 276 YYKEALEVFNEMQRDK-----IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            YKEAL++F EMQ  K     ++P +F +S VL+AC  LGAL+QG W+H ++ +  + +D
Sbjct: 174 KYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEID 233

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            VLGTAL+DMYAKCG L+ A +VF  +   K+V  ++AMI  LAM+G  D+  +LF +M 
Sbjct: 234 IVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMT 293

Query: 390 -REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             + + P+ +TF  +L AC H G+I+ G      M + +GI P ++HYGC+VDL GR+G 
Sbjct: 294 TSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGL 353

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------- 499
           + EAE  I+SMPMEP+  +W +LL   R  G+++  E   K L+E++P N          
Sbjct: 354 IKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNV 413

Query: 500 -----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                R  +V  +R  M+ +GI   PG S ++V GV+HEF  GD S  + + IY ML +I
Sbjct: 414 YAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEI 473

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
           +++L+  GY  ++ +VL D++E++KE A  YHSEKLAIAF  + T PG  +R+IKNLR+C
Sbjct: 474 MQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRIC 533

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            DCH   K+ISK+F R+I+VRD  R+HHFR+G CSC DFW
Sbjct: 534 GDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           ++S   L+ A  V   SG  +D     ++V  +A +     + A K+F+ + + NV  W+
Sbjct: 107 YSSCGDLRSAQRVFDDSGS-KDLPAWNSVVNAYAKAGL--IDDARKLFDEMPERNVISWS 163

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDS-----KPNKFTYPTVFKACSITEADKEGVQVHA 157
            ++   +   +    + L+ EM          +PN+FT  TV  AC    A ++G  VHA
Sbjct: 164 CLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHA 223

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIE 216
           ++ K  +  D+ + ++ I MYA  G + +A+++ +  GSK DV  ++A+I      G  +
Sbjct: 224 YIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTD 283

Query: 217 GAKELFK--STKDK---NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSA 266
              +LF   +T D    N+ ++  ++      G   E +  F  M ++  IT     +  
Sbjct: 284 ECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGC 343

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++D Y + G  KEA      M    ++P   +   +L+    LG +       +   +  
Sbjct: 344 MVDLYGRSGLIKEAESFIASM---PMEPDVLIWGSLLSGSRMLGDIKTC----EGALKRL 396

Query: 327 ICVDAVLGTALV---DMYAKCGR 346
           I +D +   A V   ++YAK GR
Sbjct: 397 IELDPMNSGAYVLLSNVYAKTGR 419


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/662 (34%), Positives = 365/662 (55%), Gaps = 60/662 (9%)

Query: 51  QAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q HA  L+ G  + D + SG LV  HA  RF     A + F+ +   +V  WN++L    
Sbjct: 89  QLHACALRLGLLRGDAFASGALV--HAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLC 146

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      + L+  MV      +  T  +V   C +       + +H + VK+GL  ++ 
Sbjct: 147 RNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELF 206

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I +Y   G + + R++ D  S  D++ WN++I G+ + G +  A E+F   +D  
Sbjct: 207 VCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSG 266

Query: 230 TG----------------------------------------SYNAMISGFARFGRFEEA 249
                                                     + NA++  +A+  + E A
Sbjct: 267 VSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAA 326

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
           +++F+ M  +D ++W+ +I GY ++G   EA+ V++ MQ+ + +KP +     VL A + 
Sbjct: 327 QRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSH 386

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL QG  +H    +  + +D  +GT ++D+YAKCG+LD A  +FE    +    WNA+
Sbjct: 387 LGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAV 446

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G+ +HG    A+ LF +MQ+E + PD +TF  +L+AC+HAG++D+G      MQ  YG
Sbjct: 447 ISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYG 506

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P  +HY C+VD+ GRAG L +A + I +MP++P++A+W ALLGACR HG VE G+   
Sbjct: 507 IKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVAS 566

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E++P+N               + D V ++R L++ + ++  PG S I+V   ++ F
Sbjct: 567 QNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 626

Query: 535 RTGD--GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            +G+    HPQ +EI   L  ++ K++  GY P+ S VL D++E+EKE     HSE+LAI
Sbjct: 627 YSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAI 686

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG INT P   + + KNLRVC DCH+ATK ISK+ +R+IIVRD  R+HHF++G CSC D
Sbjct: 687 AFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGD 746

Query: 653 FW 654
           FW
Sbjct: 747 FW 748


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/723 (33%), Positives = 378/723 (52%), Gaps = 79/723 (10%)

Query: 11  PHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG---------- 60
           PH +        N  TS FSQ  +  ++          L+Q     L+ G          
Sbjct: 14  PHAILGGRDREYNSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTK 73

Query: 61  ------HFQDHYVSGTLVK--CHANSRFSNF-------ELALKVFNSVHKPNVFVWNSVL 105
                     H +S ++++   + N++ + F         A  +F+ +   N F+WN ++
Sbjct: 74  SFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMI 133

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R    +  P + + LY EM+    + + FTYP V KAC      + G +VH+ VV  GL 
Sbjct: 134 RGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLE 193

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-------------- 211
            D++V +S + MYA FG +  AR + D  ++ D+  WN +I GY K              
Sbjct: 194 SDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLM 253

Query: 212 ------------------CGDIEGAKE--------LFKSTKDKNTGSYNAMISGFARFGR 245
                             C D++  KE        +  S  + N    N++I  +     
Sbjct: 254 GKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNC 313

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
             +AR+LF  +  KD ++W+++I GY ++G   E+L +F  M  D   P +     VL A
Sbjct: 314 MVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGA 373

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C  + AL  G+ IH ++ +     + ++GTALVDMY+KCG L  + +VF++M  K + +W
Sbjct: 374 CDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSW 433

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           +AM+ G  +HGR  +AI +   M+   + PD   F  +LSAC+HAG++  G +    M++
Sbjct: 434 SAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEK 493

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            Y + P + HY C+VDLLGRAG+L EA  +I +M ++P + +W ALL A R H  ++  E
Sbjct: 494 EYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAE 553

Query: 486 RLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
              + + +M P+               +R DDV ++R +++ +G+K +PG S I+++ ++
Sbjct: 554 ISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMV 613

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  GD SH Q ++IY  L ++ ++LK  GY P++S V +D++EE KE     HSE+LA
Sbjct: 614 HRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLA 673

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAF  INT PG  IR+ KNLRVC DCH+ TKLIS++  R+II+RD  R+HHF  G CSC 
Sbjct: 674 IAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCG 733

Query: 652 DFW 654
           D+W
Sbjct: 734 DYW 736


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 328/560 (58%), Gaps = 63/560 (11%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN------KARQILDDGSKSDVICWNALID 207
           Q+HA  +++G    V + +  +  Y  F  ++       A QI       ++  WN +I 
Sbjct: 58  QIHAFSIRHG----VPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIR 113

Query: 208 GYLKCGDIEGAKELFK----STKDKNTGSY------------------------------ 233
           GY +  +   A EL++    S  + +T +Y                              
Sbjct: 114 GYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFES 173

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                N ++  +A  G  E A KLF  M +++ +TW+++I+GY  +G   EAL +F EM 
Sbjct: 174 LVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMG 233

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              ++P  F +  +L+ACA LGAL  G   H ++ +  +  +   G AL+D+YAKCG + 
Sbjct: 234 LRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIR 293

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A KVF++M+ K V +W ++I GLA++G   +A+ELF +++R+ + P  ITF  VL AC+
Sbjct: 294 QAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS 353

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H GM+D G      M++ YGI P++EHYGC+VDLLGRAG + +A E I +MPM+PNA VW
Sbjct: 354 HCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVW 413

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
             LLGAC  HG +  GE     LL++EP++              +R  DV K+R+ M   
Sbjct: 414 RTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLRE 473

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  PG S++++   +HEF  GD SHPQ +EIY+ L +I + LK+EGY P+ S VL DI
Sbjct: 474 GVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADI 533

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           +EEEKETA  YHSEK+AIAF  INT  G  IRV+KNLRVC DCH A KLISKVF R+I+V
Sbjct: 534 EEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVV 593

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RDR R+HHF++G CSC D+W
Sbjct: 594 RDRSRFHHFKDGHCSCKDYW 613



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 180/393 (45%), Gaps = 43/393 (10%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P S   +K I  +L+  C +S    +Q HA  ++ G    +   G  +     S  S   
Sbjct: 34  PKSYILKKCIALLLS--CASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMS 91

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A ++F+ +  PN+F WN+++R   E   P   + LY +M     +P+  TYP + KA +
Sbjct: 92  YAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIA 151

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                +EG +VH+  ++NG    V V+++ + MYA  G    A ++ +  ++ +++ WN+
Sbjct: 152 KLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNS 211

Query: 205 LIDGYLKCGDIEGAKELFKSTK-------------------------------------- 226
           +I+GY   G    A  LF+                                         
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 227 -DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D N  + NA++  +A+ G   +A K+F+EM +K  ++W+++I G   +G+ KEALE+F 
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKC 344
           E++R  + P +     VL AC+  G +D+G      +K     V  +     +VD+  + 
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 345 GRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHG 376
           G +  A +  ++M M+     W  ++G   +HG
Sbjct: 392 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/642 (37%), Positives = 354/642 (55%), Gaps = 83/642 (12%)

Query: 31  QKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           ++  LDIL   C+T    L Q H  I+K G FQ++ +  T     A+S       A+ + 
Sbjct: 7   EQPCLDILQA-CNT-LPKLAQLHTHIIKLG-FQNNPLVLTKFT-SASSNLDAIPYAMSLV 62

Query: 91  NSVHKPNV---FVWNSVLRACLEHNEP-WRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
            SV    V   F++++++RA  E ++     I  Y+ M+G    PNK+ +P V KAC+  
Sbjct: 63  FSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGL 122

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
                G  VH  +VK G                            DD    D+   N ++
Sbjct: 123 RDLNLGKAVHGSLVKFGF---------------------------DD----DIFVQNTMV 151

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
             Y  C                               G  E ARKLF+EM   D +TW+A
Sbjct: 152 HMYCCCS------------------------------GGMEFARKLFDEMPKLDPVTWTA 181

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I GY + G    A+ +F +MQ   + P    +  VL+AC  LGAL+ G WI  ++++  
Sbjct: 182 MIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKER 241

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           +     L  ALVDM+AKCG +D A  +F +M  + + +W ++I GLAMHGR  +A+ LF 
Sbjct: 242 VLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFE 301

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           +M+   M P+ I F  +LSAC+H+G+++RG Q  + M + +GI P++EHYGC+VDLL RA
Sbjct: 302 EMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRA 361

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR------ 500
           G + EA E +  MP+EPN  +W  L+ ACR HGE++ GE + K L+  EP +        
Sbjct: 362 GLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLS 421

Query: 501 --------CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                    +  +K+R  M ++GI+  PGS+MI+++  IHEF  GD SH Q  EI  M+ 
Sbjct: 422 NIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVN 481

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
           ++  ++K  GY+P +++V  DIDEE+KE A   HSEKLAIAF  +NT PG+ IR+ KNLR
Sbjct: 482 EMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLR 541

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VC DCHSA+K ISK++ R+I++RDR R+HHFR+G+CSC DFW
Sbjct: 542 VCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/516 (41%), Positives = 317/516 (61%), Gaps = 18/516 (3%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            +HA   K G        ++ IQ Y   G V  AR++ D   + D + +N++I GY   G
Sbjct: 32  SLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSG 91

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D+  A+ LF+        ++ +M++GF R G  E AR++F EM ++D ++W+A+I G   
Sbjct: 92  DVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVG 151

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +    EAL +F  M  +   P +  +  VL+AC   GAL+ G W+H  V++  +  D  L
Sbjct: 152 NRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFL 211

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-K 392
           GTALVDMYAKCG +++A +VF  ++ +   TWNAMI GLAM+G +  A+++F +M+    
Sbjct: 212 GTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGT 271

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + PD +TF  VL AC+HAG +D G +    + Q YG++  +EHY C+VDLL R+G+L EA
Sbjct: 272 VAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEA 331

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
            ++I+ MPM+P+  VW ALLG CR H  V+  E    ++ EME                 
Sbjct: 332 HKLITEMPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAV 388

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            R + V  +R+ M+ +GI+  PG S ++++G IHEF +GD SHP   +I+  L +I  ++
Sbjct: 389 GRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRM 448

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           +  GY   +++V +DI++EEKE A  YHSEKLAIAFG I   P ATIR++KNLR C DCH
Sbjct: 449 QQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCH 508

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           S  KL+SK++ R+I+VRDR R+HHFR G CSCNDFW
Sbjct: 509 SFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 144/362 (39%), Gaps = 61/362 (16%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + E A +VF  + + ++  WN+++  C+ +  P   + L+  M+     PN+ T  +
Sbjct: 120 RAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVS 179

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+   A + G  VH  V K  L  D  + ++ + MYA  G V  A ++       +
Sbjct: 180 VLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARN 239

Query: 199 VICWNALIDG---------------------------------YLKC---GDIEGAKELF 222
              WNA+I+G                                  L C   G ++  KE F
Sbjct: 240 TCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHF 299

Query: 223 KSTKDKN-----TGSYNAMISGFARFGRFEEARKLFNEMNDK-DEITWSAIIDGYTKDGY 276
            +   K         Y  M+   AR G  +EA KL  EM  K D + W A++ G      
Sbjct: 300 YTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKN 359

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN--SICVDAVLG 334
            K A  V +EM+         +LS + AA      ++        V+R   S  ++ + G
Sbjct: 360 VKMAENVISEME-ATCSGDHVLLSNLYAAVGRWNGVED-------VRRTMRSKGIEKIPG 411

Query: 335 TALVDMYAKCGRL---DMAWKVFEDMKMKEVFTWNAMIGG-LAMHGRADDAIELFFKMQR 390
            + V+M          D +   ++D+  K +      IGG +  HG   +  E+F+ ++ 
Sbjct: 412 CSSVEMDGSIHEFISGDKSHPSYDDIHAKLI-----EIGGRMQQHGYVTETAEVFYDIED 466

Query: 391 EK 392
           E+
Sbjct: 467 EE 468


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 357/660 (54%), Gaps = 61/660 (9%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           + + D++  K   SW  L         SG+ Q+ YV                + A +VF+
Sbjct: 131 RRLFDLMPEKDVVSWNSLL--------SGYAQNGYV----------------DEAREVFD 166

Query: 92  SVHKPNVFVWNSVL----------RACL--EHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           ++ + N   WN +L           ACL  E    W +IS    M G   K        +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCG-----------DVHVKSSGIQMYACFGCVNKAR 188
           F    + +A      +  +    GL             DV   ++ +  Y   G +++A+
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
              D+  + + + +NA+I GY++   ++ A+ELF+S   +N  S+N MI+G+ + G   +
Sbjct: 287 TFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQ 346

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           ARK F+ M  +D ++W+AII GY + G+Y+EAL +F E+++D     +    C L+ CA 
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD 406

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           + AL+ G  IH    +        +G AL+ MY KCG +D A   FE ++ K+V +WN M
Sbjct: 407 IAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTM 466

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G A HG    A+ +F  M+   ++PD IT   VLSAC+H G++DRG +    M + YG
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           + P  +HY C++DLLGRAG L EA+++I +MP +P AA W ALLGA R HG  E GE+  
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           +++ +MEPQN               R  D  KMR  M++ G++  PG S ++V   IH F
Sbjct: 587 EMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTF 646

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHP+ + IY  L+++  K++ EGY   +  VL D++EEEKE   KYHSEKLA+AF
Sbjct: 647 SVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAF 706

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G +    G  IRV+KNLRVCEDCHSA K ISK+  R II+RD  R+HHF  G CSC D+W
Sbjct: 707 GILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 113/252 (44%), Gaps = 43/252 (17%)

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L    + G++D G +    M + Y + P  +HY C++DLLGR   L E            
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG----------- 819

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
                 ALLGA R HG  E GE+  ++  +M PQN     ++KMR +    G++  PG S
Sbjct: 820 ------ALLGASRIHGNTELGEKAAQMFFKMGPQN---SGISKMRDV----GVQKVPGYS 866

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
             +V   IH F  G     + + I  + +     LKM        + L            
Sbjct: 867 WFEVQNKIHTFSVGLFLSRERENIGFLEEL---DLKMREREEEKERTL------------ 911

Query: 584 KYHSEKLAIAFGFINTDPGATIRVI-KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
           KY SE LA A G +    G   RV+ K + VCEDC SA K +SK+  R I +RD    H 
Sbjct: 912 KYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS---HR 968

Query: 643 FRNGKCSCNDFW 654
           F    CSC ++W
Sbjct: 969 FNESICSCGEYW 980



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 148/328 (45%), Gaps = 41/328 (12%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G  + A  + +   +   + +NA+I GYL+      A+ LF    +++  S+N M++G+ 
Sbjct: 63  GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYV 122

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLS 300
           R  R  +AR+LF+ M +KD ++W++++ GY ++GY  EA EVF+ M +++ I     + +
Sbjct: 123 RNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 301 --------------------------CVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
                                     C++        L    W+ D +       DA+  
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP----VRDAISW 238

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             ++  YA+ G L  A ++F++   ++VFTW AM+ G   +G  D+A + FF    EK  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA-KTFFDEMPEK-- 295

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
            + +++  +++       +D   +    M         +  +  ++   G+ G +A+A +
Sbjct: 296 -NEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARK 349

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVE 482
               MP + +   W A++    + G  E
Sbjct: 350 FFDMMP-QRDCVSWAAIIAGYAQSGHYE 376



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 28/282 (9%)

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           D++ WN  I  +++ G  + A  +F +   +++ SYNAMISG+ R  +F  AR LF++M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQG 315
           ++D  +W+ ++ GY ++    +A  +F+ M      P K V+S   +L+  A  G +D+ 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLM------PEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 316 IWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
             + D++ ++NSI  + +L       Y   GR++ A  +FE     ++ +WN ++GG   
Sbjct: 162 REVFDNMPEKNSISWNGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR 216

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
             +  DA  LF KM       D I++  ++S  A  G        L+  ++++   P  +
Sbjct: 217 KKKLGDARWLFDKMPVR----DAISWNTMISGYAQGG-------GLSQARRLFDESPTRD 265

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           V  +  +V    + G L EA+     MP E N   + A++  
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAG 306


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 349/625 (55%), Gaps = 47/625 (7%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +++ H  + H +  K G   D ++   L+  +A+ R      A  +F+ +  P+   WN 
Sbjct: 135 SAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCR--RIMDARLLFDKMCHPDAVAWNM 192

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    ++      + L+ +M   D KP+     TV  AC        G  +H  V  NG
Sbjct: 193 IIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNG 252

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              D H+++                               ALI+ Y  CG ++ A++++ 
Sbjct: 253 YAIDSHLQT-------------------------------ALINMYANCGAMDLARKIYD 281

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
               K+     AM+SG+A+ G  ++AR +F++M ++D + WSA+I GY +    +EAL++
Sbjct: 282 GLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKL 341

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F+EM + +  P +  +  V++AC+ +GAL Q  WIH +V R+       +  AL+DMYAK
Sbjct: 342 FDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAK 401

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG L  A +VFE+M  K V +W++MI   AMHG AD AI+LF +M+   + P+ +TF  V
Sbjct: 402 CGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGV 461

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L AC HAG+++ G +  + M   +GI P  EHYGC+VDL  RA +L +A E+I +MP  P
Sbjct: 462 LYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAP 521

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRK 509
           N  +W +L+ AC+ HGE E GE   K LLE+EP              + +R +DV  +RK
Sbjct: 522 NVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRK 581

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
            M  +GI     SS I++N  +H F   D  H Q  EIY  L +++ KLK+ GY P++S 
Sbjct: 582 SMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSG 641

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           +L D++EE+K+    +HSEKLA+ +G I+    + IR++KNLR+CEDCHS  KL+SKV++
Sbjct: 642 ILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQ 701

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
            +I+VRDR R+HH   G CSC D+W
Sbjct: 702 IEIVVRDRTRFHHCSGGICSCRDYW 726



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 4/188 (2%)

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +F    +L A + + A + G+ IH    +     D  + T L+ MYA C R+  A  +F+
Sbjct: 121 RFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFD 180

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M   +   WN +I G   +G  DDA+ LF  M+   M+PD +    VLSAC HAG +  
Sbjct: 181 KMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSY 240

Query: 416 GLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           G     +++   Y ID  ++    ++++    G +  A ++   +    +  V  A+L  
Sbjct: 241 GRTIHEFVKDNGYAIDSHLQ--TALINMYANCGAMDLARKIYDGLS-SKHLIVSTAMLSG 297

Query: 475 CRKHGEVE 482
             K G V+
Sbjct: 298 YAKLGMVK 305


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/688 (36%), Positives = 367/688 (53%), Gaps = 106/688 (15%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P  I+  N     F+    L +++ +C  + Q LKQ HA +L++G F D + +  L+   
Sbjct: 22  PNSITLNN--DRYFANHPTLSLID-QCSETKQ-LKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKF 134
           A S F + + A +VF+ +  PN++ WN+++RA    + P + + ++  M+      P+KF
Sbjct: 78  ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T+P + KA S  E    G   H  V+K  L  DV + +S I  YA  G +    ++  + 
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 195 SKSDVICWN--------------------------------ALIDGYLKCGDIEGAKELF 222
            + DV+ WN                                A++D Y KCG +E AK LF
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLF 257

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               +K+  S+  M+ G+A+ G ++ A+ +F+ M ++D   W+A+I  Y + G  KEALE
Sbjct: 258 DKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALE 317

Query: 283 VFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           +F+E+Q  K  KP +  L              QG+ ++ H           L T+L+DMY
Sbjct: 318 LFHELQLSKTAKPDEVTLK-------------QGMKLNCH-----------LTTSLIDMY 353

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            KCG L  A  VF  ++ K+VF W+AMI GLAMHG   DAI LF KMQ +K++P+ +TF 
Sbjct: 354 CKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFT 413

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +L AC+H G+++ G      M+ +YG                              MPM
Sbjct: 414 NILCACSHVGLVEEGRTFFNQMELVYG-----------------------------KMPM 444

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
            P A+VW ALLGAC  H  V   E+    L+E+EP N               + D V+ +
Sbjct: 445 APAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGL 504

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RKLM++ G+K  PG S I+V+G++HEF  GD SHP  K+IY  L +I+ +L+  GY PN 
Sbjct: 505 RKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNK 564

Query: 568 SQVLFDIDEEE-KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           S +L  ++EE+ KE A   HSEKLAIAFG I+T     IR++KNLRVC DCHS  KL+SK
Sbjct: 565 SHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSK 624

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ R+I++RDR R+HHFR G CSC D+W
Sbjct: 625 LYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/659 (34%), Positives = 371/659 (56%), Gaps = 56/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            KQ H ++++SG  Q   V   L+  +  +   +   A  VF  +++ ++  WN+++  C 
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKA--GSVSRARSVFGQMNEVDLISWNTMISGCT 1012

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLCGDV 168
                    + ++  ++     P++FT  +V +ACS  E       Q+HA  +K G+  D 
Sbjct: 1013 LSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDS 1072

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD- 227
             V ++ I +Y+  G + +A  +  +    D+  WNA++ GY+  GD   A  L+   ++ 
Sbjct: 1073 FVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 228  -------------KNTGSYNAMISG-------------------------FARFGRFEEA 249
                         K  G    +  G                         + + G  E A
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESA 1192

Query: 250  RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            R++F+E+   D++ W+ +I G  ++G  + AL  +++M+  K++P ++  + ++ AC+ L
Sbjct: 1193 RRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLL 1252

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             AL+QG  IH ++ + +   D  + T+LVDMYAKCG ++ A  +F+    + + +WNAMI
Sbjct: 1253 TALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMI 1312

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
             GLA HG A +A++ F  M+   + PDR+TF  VLSAC+H+G++    +    MQ+ YGI
Sbjct: 1313 VGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGI 1372

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            +PE+EHY C+VD L RAG + EAE+VISSMP E +A+++  LL ACR   + E G+R+ +
Sbjct: 1373 EPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1432

Query: 490  ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             LL +EP +               + ++VA  R +M++  +K +PG S +D+   +H F 
Sbjct: 1433 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFV 1492

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD SH +   IY  ++ I+++++ EGY P++   L D++EE+KE +  YHSEKLAIA+G
Sbjct: 1493 AGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYG 1552

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             + T P  T+RVIKNLRVC DCHSA K ISKVFKR+I++RD  R+HHFRNG CSC D+W
Sbjct: 1553 LMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 215/479 (44%), Gaps = 39/479 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN--VFVWNSVLRA 107
            K+AHA IL SGH  D +V+  L+  +A  +  +   A K+F++    N  +  WN++L A
Sbjct: 676  KRAHARILTSGHHPDRFVTNNLITMYA--KCGSLSSARKLFDTTPDTNRDLVTWNAILSA 733

Query: 108  CLEH----NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
               H    ++ + +  L    V       + T   VFK C ++ +      +H + VK G
Sbjct: 734  LAAHADKSHDGFHLFRLLRRSV---VSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIG 790

Query: 164  LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL-KCGDIEGAKELF 222
            L  DV V  + + +YA FG + +AR + D  +  DV+ WN ++  Y+  C + E A  LF
Sbjct: 791  LQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYE-AMLLF 849

Query: 223  KSTKDKNTGSYNAMISGFARFGRFEE-----------ARKLFNEMND-KDEITWSAIIDG 270
                       +  +   +R  + ++           A KLF   +D  D I W+  +  
Sbjct: 850  SEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSR 909

Query: 271  YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            + + G   EA++ F +M   ++         +L   A L  L+ G  IH  V R+ +   
Sbjct: 910  FLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQV 969

Query: 331  AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
              +G  L++MY K G +  A  VF  M   ++ +WN MI G  + G  + ++ +F  + R
Sbjct: 970  VSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLR 1029

Query: 391  EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ---QMYGIDPEVEHYGCIVDLLGRAG 447
            + + PD+ T A VL AC+    ++ G    T +       G+  +      ++D+  + G
Sbjct: 1030 DSLLPDQFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRG 1086

Query: 448  YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE--RLGKILLEMEPQNRRCDDV 504
             + EAE +  +     + A W A++     HG +  G+  +  ++ + M+    R D +
Sbjct: 1087 KMEEAEFLFVNQD-GFDLASWNAIM-----HGYIVSGDFPKALRLYILMQESGERSDQI 1139



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 209/476 (43%), Gaps = 83/476 (17%)

Query: 53   HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
            H   +K G   D +V+G LV  +A  +F     A  +F+ +   +V +WN +++A ++  
Sbjct: 783  HGYAVKIGLQWDVFVAGALVNIYA--KFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 113  EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
              +  + L+SE      +P+  T  T+ +     +   E  Q  A+  K           
Sbjct: 841  LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK----------- 889

Query: 173  SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---------- 222
              + MY             DDGS  DVI WN  +  +L+ G+   A + F          
Sbjct: 890  --LFMYD------------DDGS--DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC 933

Query: 223  -----------------------------KSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
                                         +S  D+     N +I+ + + G    AR +F
Sbjct: 934  DGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVF 993

Query: 254  NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-GAL 312
             +MN+ D I+W+ +I G T  G  + ++ +F  + RD + P +F ++ VL AC+SL G  
Sbjct: 994  GQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGY 1053

Query: 313  DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
                 IH    +  + +D+ + TAL+D+Y+K G+++ A  +F +    ++ +WNA++ G 
Sbjct: 1054 YLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGY 1113

Query: 373  AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY----- 427
             + G    A+ L+  MQ    R D+IT   +++A   AG    GL  L   +Q++     
Sbjct: 1114 IVSGDFPKALRLYILMQESGERSDQIT---LVNAAKAAG----GLVGLKQGKQIHAVVVK 1166

Query: 428  -GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             G + ++     ++D+  + G +  A  V S +P  P+   W  ++  C ++G+ E
Sbjct: 1167 RGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVENGQEE 1221



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 147/377 (38%), Gaps = 85/377 (22%)

Query: 152  GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD--GSKSDVICWNALI--- 206
            G + HA ++ +G   D  V ++ I MYA  G ++ AR++ D    +  D++ WNA++   
Sbjct: 675  GKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSAL 734

Query: 207  --------DGY-----LKCGDIEGAKE----LFK-------STKDKNTGSY--------- 233
                    DG+     L+   +   +     +FK        +  ++   Y         
Sbjct: 735  AAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWD 794

Query: 234  ----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                 A+++ +A+FG   EAR LF+ M  +D + W+ ++  Y       EA+ +F+E  R
Sbjct: 795  VFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHR 854

Query: 290  DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
               +P    L                      + R   C   +L       YA       
Sbjct: 855  TGFRPDDVTLRT--------------------LSRVVKCKKNILELKQFKAYAT------ 888

Query: 350  AWKVF-EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
              K+F  D    +V  WN  +      G A +A++ F  M   ++  D +TF  +L+  A
Sbjct: 889  --KLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVA 946

Query: 409  HAGMIDRGLQALTYMQQMYGI------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
                   GL  L   +Q++GI      D  V    C++++  +AG ++ A  V   M  E
Sbjct: 947  -------GLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-E 998

Query: 463  PNAAVWEALLGACRKHG 479
             +   W  ++  C   G
Sbjct: 999  VDLISWNTMISGCTLSG 1015


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 342/629 (54%), Gaps = 63/629 (10%)

Query: 89  VFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +FN  V K +VF WNSV+       +    +  +S M  +   P + ++P   KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G Q H      G   D+ V S+ I MY+  G +  AR++ D+  K D++ W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 208 GYLKCGDIEGAKELFKSTK----------------------------------------- 226
           GY   G+   A  LFK                                            
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 227 ----DKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
               D+     N ++  +A+ G      ARK+F+++ DKD +++++I+  Y + G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 281 LEVFNEMQRDKIKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            EVF  + ++K+       LS VL A +  GAL  G  IHD V R  +  D ++GT+++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCGR++ A K F+ MK K V +W AMI G  MHG A  A+ELF  M    +RP+ IT
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC+HAG+   G +    M+  +G++P +EHYGC+VDLLGRAG+L +A ++I  M
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
            M+P++ +W +LL ACR H  VE  E     L E++  N               R  DV 
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R +MK RG+   PG S++++NG +H F  GD  HPQ ++IY  L ++  KL   GY  
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N+S V  D+DEEEKE   + HSEKLAIAFG +NT PG+T+ V+KNLRVC DCH+  KLIS
Sbjct: 571 NTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLIS 630

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+  R+ +VRD  R+HHF++G CSC D+W
Sbjct: 631 KIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 159/378 (42%), Gaps = 56/378 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H      G+  D +VS  L+  ++       E A KVF+ + K ++  W S++R   
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTC--GKLEDARKVFDEIPKRDIVSWTSMIRGYD 153

Query: 110 EHNEPWRVISLYSEMVGVDSKP-------NKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
            +      +SL+ +++ VD          +     +V  ACS   A      +H+ V+K 
Sbjct: 154 LNGNALDAVSLFKDLL-VDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 163 GLCGDVHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           G    V V ++ +  YA    G V  AR+I D     D + +N+++  Y + G    A E
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFE 272

Query: 221 LFKSTKDKNTGSYNA----------------------------------------MISGF 240
           +F+        ++NA                                        +I  +
Sbjct: 273 VFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMY 332

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + GR E ARK F+ M +K+  +W+A+I GY   G+  +ALE+F  M    ++P      
Sbjct: 333 CKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFV 392

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMK 358
            VLAAC+  G   +G W   +  +    V+  L     +VD+  + G L  A+ + + MK
Sbjct: 393 SVLAACSHAGLHVEG-WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMK 451

Query: 359 MK-EVFTWNAMIGGLAMH 375
           MK +   W++++    +H
Sbjct: 452 MKPDSIIWSSLLAACRIH 469


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 357/660 (54%), Gaps = 61/660 (9%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           + + D++  K   SW  L         SG+ Q+ YV                + A +VF+
Sbjct: 131 RRLFDLMPEKDVVSWNSLL--------SGYAQNGYV----------------DEAREVFD 166

Query: 92  SVHKPNVFVWNSVL----------RACL--EHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           ++ + N   WN +L           ACL  E    W +IS    M G   K        +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCG-----------DVHVKSSGIQMYACFGCVNKAR 188
           F    + +A      +  +    GL             DV   ++ +  Y   G +++A+
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
              D+  + + + +NA+I GY++   ++ A+ELF+S   +N  S+N MI+G+ + G   +
Sbjct: 287 TFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQ 346

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           ARK F+ M  +D ++W+AII GY + G+Y+EAL +F E+++D     +    C L+ CA 
Sbjct: 347 ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCAD 406

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           + AL+ G  IH    +        +G AL+ MY KCG +D A   FE ++ K+V +WN M
Sbjct: 407 IAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTM 466

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G A HG    A+ +F  M+   ++PD IT   VLSAC+H G++DRG +    M + YG
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           + P  +HY C++DLLGRAG L EA+++I +MP +P AA W ALLGA R HG  E GE+  
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           +++ +MEPQN               R  D  KMR  M++ G++  PG S ++V   IH F
Sbjct: 587 EMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTF 646

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHP+ + IY  L+++  K++ EGY   +  VL D++EEEKE   KYHSEKLA+AF
Sbjct: 647 SVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAF 706

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G +    G  IRV+KNLRVCEDCHSA K ISK+  R II+RD  R+HHF  G CSC D+W
Sbjct: 707 GILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 148/328 (45%), Gaps = 41/328 (12%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G  + A  + +   +   + +NA+I GYL+      A+ LF    +++  S+N M++G+ 
Sbjct: 63  GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYV 122

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLS 300
           R  R  +AR+LF+ M +KD ++W++++ GY ++GY  EA EVF+ M +++ I     + +
Sbjct: 123 RNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 301 --------------------------CVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
                                     C++        L    W+ D +       DA+  
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP----VRDAISW 238

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             ++  YA+ G L  A ++F++   ++VFTW AM+ G   +G  D+A + FF    EK  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA-KTFFDEMPEK-- 295

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
            + +++  +++       +D   +    M         +  +  ++   G+ G +A+A +
Sbjct: 296 -NEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NISSWNTMITGYGQIGDIAQARK 349

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVE 482
               MP + +   W A++    + G  E
Sbjct: 350 FFDMMP-QRDCVSWAAIIAGYAQSGHYE 376



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 28/282 (9%)

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           D++ WN  I  +++ G  + A  +F +   +++ SYNAMISG+ R  +F  AR LF++M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQG 315
           ++D  +W+ ++ GY ++    +A  +F+ M      P K V+S   +L+  A  G +D+ 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLM------PEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 316 IWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
             + D++ ++NSI  + +L       Y   GR++ A  +FE     ++ +WN ++GG   
Sbjct: 162 REVFDNMPEKNSISWNGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR 216

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
             +  DA  LF KM       D I++  ++S  A  G        L+  ++++   P  +
Sbjct: 217 KKKLGDARWLFDKMPVR----DAISWNTMISGYAQGG-------GLSQARRLFDESPTRD 265

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           V  +  +V    + G L EA+     MP E N   + A++  
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAG 306


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/677 (36%), Positives = 368/677 (54%), Gaps = 57/677 (8%)

Query: 33  TILDILNTKCHTS---WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           T L ILN    TS    + +K+ H    K+G   D  V   L+  H  ++  + + A  V
Sbjct: 234 TYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALI--HMYAKCGSIDDARLV 291

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F+ +   +V  WN+++    ++       +++ +M      P+  TY ++      T A 
Sbjct: 292 FDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW 351

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
           +   +VH H V+ GL  D+ V S+ + MY   G ++ A+ I D  +  +V  WNA+I G 
Sbjct: 352 EWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGV 411

Query: 210 L--KCGD---------------------------------IEGAKELFKSTKDKNTGSY- 233
              KCG                                  +E  KE+     D       
Sbjct: 412 AQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLR 471

Query: 234 --NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
             NA++  +A+ G    A+++F++M +++  TW+ +I G  + G   EA  +F +M R+ 
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I P       +L+ACAS GAL+    +H H     +  D  +G ALV MYAKCG +D A 
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VF+DM  ++V++W  MIGGLA HGR  DA++LF KM+ E  +P+  +F  VLSAC+HAG
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           ++D G +    + Q YGI+P +EHY C+VDLLGRAG L EA+  I +MP+EP  A W AL
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGAL 711

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIK 517
           LGAC  +G +E  E   K  L+++P++                 +    +R +M+ RGI+
Sbjct: 712 LGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIR 771

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PG S I+V+  IH F  GD SHP+ KEIY  LK +I++LK EGY P++  VL + D+E
Sbjct: 772 KEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQE 831

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
            KE A   HSEKLAI +G ++T     IRV KNLRVC DCH+ATK ISKV  R+I+ RD 
Sbjct: 832 YKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDA 891

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHF++G CSC D+W
Sbjct: 892 KRFHHFKDGVCSCGDYW 908



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 159/623 (25%), Positives = 264/623 (42%), Gaps = 107/623 (17%)

Query: 33  TILDILNTKCH-TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T L IL   C   S +  K+ HA I++SG   D  V   LV  +   +  + + A  +F+
Sbjct: 32  TYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYV--KCGSIDDAQLIFD 89

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + NV  W  ++     +         + +M      PN +TY ++  A +   A + 
Sbjct: 90  KMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
             +VH+H V  GL  D+ V ++ + MYA  G ++ AR + D   + D+  W  +I G  +
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 212 CGDIEGAKELF-------------------KSTKDKNTGSY------------------- 233
            G  + A  LF                    ++   +TG+                    
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 234 ---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
              NA+I  +A+ G  ++AR +F+ M D+D I+W+A+I G  ++G   EA  +F +MQ++
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
              P       +L    S GA +    +H H     +  D  +G+A V MY +CG +D A
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC--- 407
             +F+ + ++ V TWNAMIGG+A      +A+ LF +M+RE   PD  TF  +LSA    
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449

Query: 408 --------AHAGMIDRGL------QALTYM-----QQMYG-------IDPEVEHYGCIVD 441
                    H+  ID GL       AL +M       MY        ++  V  +  ++ 
Sbjct: 450 EALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMIS 509

Query: 442 LLGRAGYLAEAEEVISSMPME---PNAAVWEALLGACRKHGEVEFGE------------- 485
            L + G   EA  +   M  E   P+A  + ++L AC   G +E+ +             
Sbjct: 510 GLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVS 569

Query: 486 --RLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
             R+G  L+ M  +    DD  ++   M ER +     S  + + G+    R  D     
Sbjct: 570 DLRVGNALVHMYAKCGSVDDARRVFDDMLERDVY----SWTVMIGGLAQHGRGLDA---- 621

Query: 544 VKEIYLMLKKIIEKLKMEGYSPN 566
                     +  K+K+EG+ PN
Sbjct: 622 --------LDLFVKMKLEGFKPN 636



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 201/424 (47%), Gaps = 50/424 (11%)

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           + +YS+M     +PN+ TY ++ KAC    + K G ++HAH++++G   DV V+++ + M
Sbjct: 15  MKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNM 74

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSY 233
           Y   G ++ A+ I D   + +VI W  +I G    G  + A   F   + +    N+ +Y
Sbjct: 75  YVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTY 134

Query: 234 -----------------------------------NAMISGFARFGRFEEARKLFNEMND 258
                                              NA++  +A+ G  ++AR +F+ M +
Sbjct: 135 VSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVE 194

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA--SLGALDQGI 316
           +D  +W+ +I G  + G  +EA  +F +M+R    P       +L A A  S GAL+   
Sbjct: 195 RDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVK 254

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            +H H  +     D  +G AL+ MYAKCG +D A  VF+ M  ++V +WNAMIGGLA +G
Sbjct: 255 EVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNG 314

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +A  +F KMQ+E   PD  T+  +L+     G  +   +   +  ++ G+  ++   
Sbjct: 315 CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-GLVSDLRVG 373

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
              V +  R G + +A+ +   + +  N   W A++G   +       ++ G+  L +  
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQ-------QKCGREALSLFL 425

Query: 497 QNRR 500
           Q RR
Sbjct: 426 QMRR 429



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 17/235 (7%)

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I GY + GY ++A++V+++M+R+  +P +     +L AC S  +L  G  IH H+ ++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              D  + TALV+MY KCG +D A  +F+ M  + V +W  MIGGLA +GR  +A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIV 440
           +MQRE   P+  T+  +L+A A AG       AL ++++++      G+  ++     +V
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAG-------ALEWVKEVHSHAVNAGLALDLRVGNALV 173

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
            +  ++G + +A  V   M +E +   W  ++G   +HG    G+    + L+ME
Sbjct: 174 HMYAKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGR---GQEAFSLFLQME 224


>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/662 (37%), Positives = 369/662 (55%), Gaps = 91/662 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H +++K G+  D +V  +LV  +  S FS    A +VF+ + + +V  W SV++   
Sbjct: 177 ENVHGMVVKDGYESDIFVGNSLVNMY--SIFSRMVDAKRVFDEMPQRDVITWTSVVKGYA 234

Query: 110 EHNEPW-RVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              E +   +  +++M+  D  KPN+    ++  AC+   A  +G  +H ++ KN +   
Sbjct: 235 MRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLS 294

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------------ 209
            ++ ++ I MYA  G ++ AR++ D   K D++ W ++I G                   
Sbjct: 295 SNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLA 354

Query: 210 --LKCGDI-----------EGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFEEA 249
              K  DI            G  E       + KS  + N    N++I+  + F R E+A
Sbjct: 355 EGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDA 414

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF--NEMQRDKIKPRKFVLSCVLAACA 307
           RK+FN+M+++D  +W++++ GY K G    A   F  N +  D++ P + VL CVL+ACA
Sbjct: 415 RKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACA 474

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LGALDQG WIH ++ +  I   + + TAL+DMYAKCGR+D A +VF  +  ++V ++ +
Sbjct: 475 HLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTS 534

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI GL+ HG   DA+                                RG   L  M+ ++
Sbjct: 535 MISGLSYHGLGKDAL--------------------------------RGSSILANMESLW 562

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P++EHYGC +DLLGRAGYL  A EV+ +MPMEP+  +W ALL A R H  V  GE++
Sbjct: 563 GIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQI 622

Query: 488 --------------GKILLE-MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
                         G++LL  +     R + V +MRKLM +R  +++PG S I+VNG++H
Sbjct: 623 ISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVH 682

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EFR  D  HPQ+ EI   L +I+++L   GYS N+ QV FD++EEEKE A  +HSEKLAI
Sbjct: 683 EFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAI 742

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG ++T+PG  IR++KNLR CEDCHSA K IS+V+ R+I+VRDR R+H F  G CSC D
Sbjct: 743 AFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKD 802

Query: 653 FW 654
           FW
Sbjct: 803 FW 804



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 248/529 (46%), Gaps = 60/529 (11%)

Query: 15  KPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKC 74
           +P   S+ ++P    S  T + +L  +   S   +KQ HA ++  G  Q+  + G L+  
Sbjct: 43  EPSGTSSFSLP----SHSTFVQLLKKR--PSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS 96

Query: 75  HANSRFSNFELALKVFNSVHK-PNVFVWNSVLRACLEHNEPWRVISLYSEMV--GVDSKP 131
           +   R  N   A  VF+     P   +WN +++A  +       + L+ +M+  G  +  
Sbjct: 97  YIGCR--NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSA 154

Query: 132 NKFTYPTVFKACSITEADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           +K+T+  VF ACS     +  G  VH  VVK+G   D+ V +S + MY+ F  +  A+++
Sbjct: 155 DKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRV 214

Query: 191 LDDGSKSDVICWNALIDGY----------LKC---------------------------G 213
            D+  + DVI W +++ GY          L+C                           G
Sbjct: 215 FDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLG 274

Query: 214 DIEGAKELFKSTKDKN-----TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
            ++  K +     DKN     +    A+I  +A+ GR + AR++F+ ++ +D +TW+++I
Sbjct: 275 ALDQGKWIHVYI-DKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMI 333

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            G +  G   E L  F+EM  +  KP    L  VL  C+  G +++ I +H  V ++   
Sbjct: 334 SGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEI-VHGMVVKSGFE 392

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF-- 386
            +  +G ++++M +   R++ A KVF  M  ++VF+W +++GG A HG  D A   FF  
Sbjct: 393 SNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCN 452

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            +  +++ P+     CVLSACAH G +D+G     Y+ ++ GI         ++D+  + 
Sbjct: 453 MLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKI-GIRQSSNISTALIDMYAKC 511

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           G +  A  V + +  + +   + +++     HG  +   R   IL  ME
Sbjct: 512 GRIDCASRVFNGI-CKRDVLSFTSMISGLSYHGLGKDALRGSSILANME 559


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 363/624 (58%), Gaps = 22/624 (3%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+  HA IL+ G      V+  LV C  +S   + + +L +F +  + N FV+N+++R  
Sbjct: 45  LRLVHAHILRRGVLSSR-VAAQLVSC--SSLLKSPDYSLSIFRNSEERNPFVFNALIRGL 101

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            E+      +  +  M+ +  KP++ T+P V K+ S       G  +HA  +KN +  D 
Sbjct: 102 TENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDS 161

Query: 169 HVKSSGIQMYACFGCVNKARQILDDG----SKSDVICWNALIDGYLKCGDIEGAKELFKS 224
            V+ S + MYA  G +N A Q+ ++      K  ++ WN L++GY +  D++ A  LF+S
Sbjct: 162 FVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRS 221

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             ++N+GS++ +I G+   G    A++LF  M +K+ ++W+ +I+G+++ G Y+ A+  +
Sbjct: 222 MPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            EM    +KP ++ ++ VL+AC+  GAL  GI IH ++  N I +D  +GT+L+DMYAKC
Sbjct: 282 FEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKC 341

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A  VF +M  K++ +W AMI G A+HGR   AI+ F +M     +PD + F  VL
Sbjct: 342 GEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC ++G +D GL     M+  Y I+P ++HY  +VDLLGRAG L EA E++  MP+ P+
Sbjct: 402 TACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPD 461

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
              W AL  AC+ H        L   LLE++P+ R              +  DV K R  
Sbjct: 462 LTTWAALYRACKAHKSNRTDIVLQN-LLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLS 520

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           ++++  + + G S I+++  +++F   D +H Q +EI L L+ II      GY P +   
Sbjct: 521 LQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEGIISLAIERGYIPGADWS 580

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           + DI+EEEKE+    HSEKLA+  G + T PG TIR+IKNLR+C DCHS  K +SK+ +R
Sbjct: 581 IHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQR 640

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I++RD  ++HHF++G CSC D+W
Sbjct: 641 GILLRDARQFHHFKDGSCSCGDYW 664


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/660 (34%), Positives = 366/660 (55%), Gaps = 56/660 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           HL Q +A +L +G     ++   LV   +N        A K+F+    P+VF+WN+++R 
Sbjct: 90  HLNQIYAKLLVTGLQYGGFLIAKLVNKASN--IGEVSCARKLFDKFPDPDVFLWNAIVRC 147

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              H      I +Y+ M      P+ F++P V KACS   A + G +VH  + ++G   D
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESD 207

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           V V++  + +YA  G + +A  +        ++ W ++I GY + G    A  +F   + 
Sbjct: 208 VFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRK 267

Query: 228 KNTG-----------SYN----------------------------AMISGFARFGRFEE 248
            N             +Y                             ++ S +A+ G    
Sbjct: 268 TNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMV 327

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR  FN++ +   I W+A+I GY K+GY +EA+E+F  M+   I+P    ++  +AACA 
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +G+L+   W+ +++  +    D ++ T+L+D YAKCG +DMA  VF+ +  K+V  W+AM
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAM 447

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G  +HG+  ++I LF  M++  + P+ +TF  +L+AC ++G+++ G      M+  YG
Sbjct: 448 MVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YG 506

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P  +HY C+VDLLGRAG+L  A   + +MP+EP  +VW ALL AC+ H  V  GE   
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAA 566

Query: 489 KILLEMEPQN------------RRC--DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L  ++P N              C  D VAK+R LM+E+G+  + G S+I++NG +  F
Sbjct: 567 ERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAF 626

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
           + GD +HP+ KEI+  ++ +  +LK  G+ P++  VL D++ EE E     HSE+LAIA+
Sbjct: 627 QAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAY 686

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG T+R+ KNLR C++CH+A KLISK+  R+I+VRD  R+HHF++G CSC D+W
Sbjct: 687 GLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 341/629 (54%), Gaps = 63/629 (10%)

Query: 89  VFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +FN  V K +VF WNSV+       +    +  +S M  +   P + ++P   KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G Q H      G   D+ V S+ I MY+  G +  AR++ D+  K +++ W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 208 GYLKCGDIEGAKELFKSTK----------------------------------------- 226
           GY   G+   A  LFK                                            
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVI 210

Query: 227 ----DKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
               D+     N ++  +A+ G      ARK+F+++ DKD +++++I+  Y + G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 281 LEVFNEMQRDKIKPRK-FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            +VF  + ++K+       LS VL A +  GAL  G  IHD V R  +  D ++GT+++D
Sbjct: 271 FDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCGR++ A   F+ MK K V +W AMI G  MHG A  A+ELF  M    +RP+ IT
Sbjct: 331 MYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC+HAG+ D G      M+  +G++P +EHYGC+VDLLGRAG+L +A ++I  M
Sbjct: 391 FVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKM 450

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
            MEP++ +W +LL ACR H  VE  E     L E++P N               R  DV 
Sbjct: 451 KMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVE 510

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R  MK RG+   PG S++++NG +H F  GD  HPQ ++IY  L ++  KL   GY  
Sbjct: 511 RVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N+S V  D+DEEEKE   + HSEKLAIAFG +NT PG+T+ V+KNLRVC DCH+  KLIS
Sbjct: 571 NTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLIS 630

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+  R+ +VRD  R+HHF++G CSC D+W
Sbjct: 631 KIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 54/377 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H      G+  D +VS  L+  ++       E A KVF+ + K N+  W S++R   
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTC--GKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTY------PTVFKACSITEADKEGVQVHAHVVKNG 163
            +      +SL+ +++  ++  +   +       +V  ACS   A      +H+ V+K G
Sbjct: 154 LNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRG 213

Query: 164 LCGDVHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
               V V ++ +  YA    G V  AR+I D     D + +N+++  Y + G    A ++
Sbjct: 214 FDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDV 273

Query: 222 FKSTKDKNTGSYN----------------------------------------AMISGFA 241
           F+    +   ++N                                        ++I  + 
Sbjct: 274 FRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYC 333

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + GR E AR  F+ M +K+  +W+A+I GY   G+  +ALE+F  M    ++P       
Sbjct: 334 KCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVS 393

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKM 359
           VLAAC+  G  D G W   +  +    V+  L     +VD+  + G L  A+ + + MKM
Sbjct: 394 VLAACSHAGLHDVG-WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKM 452

Query: 360 K-EVFTWNAMIGGLAMH 375
           + +   W++++    +H
Sbjct: 453 EPDSIIWSSLLAACRIH 469



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 36/326 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+ ++K G  +   V  TL+  +A        +A K+F+ +   +   +NS++    +  
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 113 EPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                  ++  ++       N  T  TV  A S + A + G  +H  V++ GL  DV V 
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK--- 228
           +S I MY   G V  AR   D     +V  W A+I GY   G    A ELF +  D    
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 229 -NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
            N  ++ ++++  +  G  +     FN M  +  +      +  ++D   + G+ ++A +
Sbjct: 386 PNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-------- 334
           +  +M   K++P   + S +LAAC           IH +V+   I V  +          
Sbjct: 446 LIQKM---KMEPDSIIWSSLLAACR----------IHKNVELAEISVARLFELDPSNCGY 492

Query: 335 -TALVDMYAKCGRLDMAWKVFEDMKM 359
              L  +YA  GR    WK  E ++M
Sbjct: 493 YMLLSHIYADSGR----WKDVERVRM 514


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 89/652 (13%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+S      +L+    KC T    LKQ HA ++ +G     Y    ++   +   F++  
Sbjct: 6   PSSNHPTLQLLE----KCKT-LDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTH-- 58

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            AL +FN +  P +F++N                +L S +  +  KP+     +++    
Sbjct: 59  -ALSIFNHIPNPTIFLYN----------------TLISSLANI--KPHTHIAFSLYSR-- 97

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                   V  H  +  NG       K+ G Q +   G       +       D     A
Sbjct: 98  --------VLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAA 149

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L++ Y KCG + GA                               R LFN+++  D  +W
Sbjct: 150 LLNYYAKCGKV-GA------------------------------CRYLFNQISKPDLASW 178

Query: 265 SAIIDGYTKDG--------YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
           ++I+  Y  +            E L +F EMQ+  IK  +  L  +++ACA LGAL QG 
Sbjct: 179 NSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGA 238

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           W H +V ++++ ++  +GTAL+DMY+KCG LD+A ++F+ +  ++   +NAMIGG A+HG
Sbjct: 239 WAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHG 298

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
               A++LF KM  E + PD +T    + +C+H G+++ G      M+++YG++P++EHY
Sbjct: 299 YGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHY 358

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLLGRAG L EAEE + +MPM+PNA +W +LLGA R HG +E GE + K L+++EP
Sbjct: 359 GCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEP 418

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
           +                R DDV ++RKLMK+ GI   PGSS+++V G +HEF  GD +HP
Sbjct: 419 ETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHP 478

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
           + KEIYL L+++  +L   G+ P + +VLFDI+EEEKE A  YHSE+LAIAF  I +   
Sbjct: 479 RSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHC 538

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A IR+IKNLRVC DCH+++KLISK+++R+IIVRDR R+HHF+ G CSC+D+W
Sbjct: 539 APIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/686 (35%), Positives = 369/686 (53%), Gaps = 57/686 (8%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           + I  +EFS  +++++  T    S Q  ++ H  ++K G+  D + +  LV  +A  +  
Sbjct: 105 SGIRPNEFSLSSMINVC-TGLEDSVQG-RKIHGYLIKLGYDSDAFSANALVDMYA--KVG 160

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             E A  VF+ + KP++  WN+++  C+ H    R + L  EM      PN FT  +  K
Sbjct: 161 ILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+     + G Q+H+ ++K  +  D  +    I MY+    ++ AR +     + D+I 
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA 280

Query: 202 WNALIDGYLKCGDIEGAKELF--------------------------------------- 222
           WNA+I G+ +  + E A  LF                                       
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           KS  + +    N++I  + + G  E+A ++F E    D + +++++  Y +DG  +EAL 
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALR 400

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++ EMQ   IKP  FV S +L ACASL A +QG  +H H+ +     D   G +LV+MYA
Sbjct: 401 LYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYA 460

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG ++ A   F  + ++ + +W+AMIGGLA HG   +A++LF +M +  + P+ IT   
Sbjct: 461 KCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVS 520

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL AC HAG++         M+ ++GI+P  EHY C++DLLGRAG L  A E+++ MP +
Sbjct: 521 VLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQ 580

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMR 508
            NA VW ALLGA R H  ++ GE+  ++LL +EP+                  D VA++R
Sbjct: 581 ANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVR 640

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           +LMK+  +K  PG S ++V   ++ F  GD SH +  EIY  L ++ + LK  GY P   
Sbjct: 641 RLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVE 700

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
             L D++  EKE    +HSEKLA+AFG I T PGA IRV KNLR+C DCH+  K ISK+ 
Sbjct: 701 IDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIV 760

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+IIVRD  R+HHFR G CSC ++W
Sbjct: 761 SREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 233/484 (48%), Gaps = 43/484 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H +++ +G   D +V+ +LV  +A  +   F  A  +F+++   +V  WN++    +
Sbjct: 30  KQVHGIVVVTGFDSDEFVANSLVILYA--KCGGFGDARSLFDAIPDRSVVSWNALFSCYV 87

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             +     +SL+ +MV    +PN+F+  ++   C+  E   +G ++H +++K G   D  
Sbjct: 88  HSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAF 147

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL------------------- 210
             ++ + MYA  G +  A  + D+ +K D++ WNA+I G +                   
Sbjct: 148 SANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSG 207

Query: 211 -------------KCGDI---EGAKELFKSTKDKNTGSYN----AMISGFARFGRFEEAR 250
                         C  +   E  ++L  S    + GS +     +I  +++    ++AR
Sbjct: 208 MCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDAR 267

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F  M ++D I W+A+I G++++   +EA  +F  M  + I   +  LS VL + A+L 
Sbjct: 268 LVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQ 327

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A      IH    ++    D  +  +L+D Y KCG ++ A +VFE+  + ++  + +++ 
Sbjct: 328 ANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVT 387

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
             A  G+ ++A+ L+ +MQ   ++PD    + +L+ACA     ++G Q   ++ + +G  
Sbjct: 388 AYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK-FGFM 446

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            ++     +V++  + G + +A    S +P+      W A++G   +HG  +   +L K 
Sbjct: 447 SDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQ 505

Query: 491 LLEM 494
           +L++
Sbjct: 506 MLKV 509



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 196/414 (47%), Gaps = 48/414 (11%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           K N+F +P+V KAC++T+    G QVH  VV  G   D  V +S + +YA  G    AR 
Sbjct: 7   KCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARS 66

Query: 190 ILDDGSKSDVICWNALIDGYLK--------------------------------CGDIEG 217
           + D      V+ WNAL   Y+                                 C  +E 
Sbjct: 67  LFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLED 126

Query: 218 AKE-------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           + +       L K   D +  S NA++  +A+ G  E+A  +F+E+   D ++W+AII G
Sbjct: 127 SVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
                Y+  ALE+  EM +  + P  F LS  L ACA +   + G  +H  + +  +  D
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD 246

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           + LG  L+DMY+KC  +D A  VF+ M  +++  WNA+I G + +   ++A  LF  M  
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 391 EKMRPDRITFACVLSACA--HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
           E +  ++ T + VL + A   A  + R + AL+ ++  +  D  V     ++D  G+ G+
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALS-LKSGFEFDNYV--VNSLIDTYGKCGH 363

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
           + +A  V    P+  +  ++ +L+ A  + G+   GE   ++ LEM+ +  + D
Sbjct: 364 VEDATRVFEESPI-VDLVLFTSLVTAYAQDGQ---GEEALRLYLEMQDRGIKPD 413



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 144/353 (40%), Gaps = 42/353 (11%)

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           IK  +F    VL AC     L  G  +H  V       D  +  +LV +YAKCG    A 
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 352 KVFEDMKMKEVFTWNAMIGGLA---MHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            +F+ +  + V +WNA+        MHG   +A+ LF  M    +RP+  + + +++ C 
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHG---EAVSLFHDMVLSGIRPNEFSLSSMINVCT 122

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
                 +G +   Y+ ++ G D +      +VD+  + G L +A  V   +  +P+   W
Sbjct: 123 GLEDSVQGRKIHGYLIKL-GYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSW 180

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMK--------ERG----- 515
            A++  C  H   E+  R  ++L EM  ++  C ++  +   +K        E G     
Sbjct: 181 NAIIAGCVLH---EYHHRALELLREMN-KSGMCPNMFTLSSALKACAGMALRELGRQLHS 236

Query: 516 --IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK--IIEKLKMEGYSPNSSQVL 571
             IK + GS      G+I  +   +          LM ++  I     + G+S N     
Sbjct: 237 SLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEE--- 293

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR---VCEDCHSAT 621
              DEE     P  H+E +    GF  T     ++ I  L+   +C   H+ +
Sbjct: 294 ---DEEAASLFPLMHTEGI----GFNQTTLSTVLKSIAALQANYMCRQIHALS 339


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/686 (36%), Positives = 367/686 (53%), Gaps = 85/686 (12%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            KQ HA  L++G  +  Y +  LV  +A  R      A  +F      ++  WN+V+ + L
Sbjct: 454  KQVHAYTLRNGDLRT-YTNNALVTMYA--RLGRVNDAKALFGVFDGKDLVSWNTVI-SSL 509

Query: 110  EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGD 167
              N+ +    +Y  ++ VD  +P+  T  +V  ACS  E  + G ++H + ++NG L  +
Sbjct: 510  SQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIEN 569

Query: 168  VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
              V ++ + MY       K R + D   +  V  WNAL+ GY +    + A  LF     
Sbjct: 570  SFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMIS 629

Query: 223  -----------------------------------KSTKDKNTGSYNAMISGFARFGRFE 247
                                               K    K+    NA++  ++R GR E
Sbjct: 630  ESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVE 689

Query: 248  EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---------------- 291
             ++ +F  MN +D ++W+ +I G    G Y +AL + +EMQR +                
Sbjct: 690  ISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGG 749

Query: 292  --IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
               KP    L  VL  CA+L AL +G  IH +  +  + +D  +G+ALVDMYAKCG L++
Sbjct: 750  VPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNL 809

Query: 350  AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM------QREKMRPDRITFACV 403
            A +VF+ M ++ V TWN +I    MHG+ ++A+ELF  M       RE +RP+ +T+  +
Sbjct: 810  ASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAI 869

Query: 404  LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
             +AC+H+GM+D GL     M+  +G++P  +HY C+VDLLGR+G + EA E+I++MP   
Sbjct: 870  FAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNL 929

Query: 464  NAA-VWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMR 508
            N    W +LLGACR H  VEFGE   K L  +EP                   D    +R
Sbjct: 930  NKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVR 989

Query: 509  KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
            K MKE G++  PG S I+    +H+F +GD SHPQ KE++  L+ + ++++ EGY P+ S
Sbjct: 990  KKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDIS 1049

Query: 569  QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
             VL ++D+EEKET    HSE+LAIAFG +NT PG TIRV KNLRVC DCH ATK+ISK+ 
Sbjct: 1050 CVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIV 1109

Query: 629  KRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R+II+RD  R+HHF NG CSC D+W
Sbjct: 1110 DREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 133/554 (24%), Positives = 231/554 (41%), Gaps = 72/554 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA + K GH     V+      +   +  +   A +VF+ +   +   WNS++ A L
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMI-ATL 408

Query: 110 EHNEPWRV-ISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGD 167
              E W + + L+  M+  +  P  FT  +V  ACS +    + G QVHA+ ++NG    
Sbjct: 409 CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL-R 467

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG--------------YL--- 210
            +  ++ + MYA  G VN A+ +       D++ WN +I                YL   
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 211 ---------------KCGDIEGAK--------ELFKSTKDKNTGSYNAMISGFARFGRFE 247
                           C  +E  +         L      +N+    A++  +    + +
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPK 587

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAAC 306
           + R +F+ +  +    W+A++ GY ++ +  +AL +F EM    +  P     + VL AC
Sbjct: 588 KGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPAC 647

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
                      IH ++ +     D  +  AL+DMY++ GR++++  +F  M  +++ +WN
Sbjct: 648 VRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWN 707

Query: 367 AMIGGLAMHGRADDAIELFFKMQREK------------------MRPDRITFACVLSACA 408
            MI G  + GR DDA+ L  +MQR +                   +P+ +T   VL  CA
Sbjct: 708 TMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCA 767

Query: 409 HAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
               + +G +   Y ++Q   +D  V     +VD+  + G L  A  V   MP+  N   
Sbjct: 768 ALAALGKGKEIHAYAVKQKLAMDVAVG--SALVDMYAKCGCLNLASRVFDQMPIR-NVIT 824

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           W  L+ A   HG+ E    L +I+      NR   +V +  ++           S M+D 
Sbjct: 825 WNVLIMAYGMHGKGEEALELFRIMTAGGGSNR---EVIRPNEVTYIAIFAACSHSGMVDE 881

Query: 528 NGVIHEFRTGDGSH 541
              +H F T   SH
Sbjct: 882 G--LHLFHTMKASH 893



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 192/421 (45%), Gaps = 51/421 (12%)

Query: 101 WNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           W  +LR+   H+  +R  IS Y+ M+   + P+ F +P V KA +       G Q+HAHV
Sbjct: 298 WIDLLRS-QTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHV 356

Query: 160 VKNGLC--GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------ 211
            K G      V V +S + MY   G +  ARQ+ DD    D + WN++I    +      
Sbjct: 357 FKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWEL 416

Query: 212 --------------------------CGDIEGAKELFKSTK-------DKNTGSYNAMIS 238
                                     C  + G   L K          D  T + NA+++
Sbjct: 417 SLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVT 476

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
            +AR GR  +A+ LF   + KD ++W+ +I   +++  ++EAL     M  D ++P    
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDMAWKVFEDM 357
           L+ VL AC+ L  L  G  IH +  RN   ++ + +GTALVDMY  C +      VF+ +
Sbjct: 537 LASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGV 596

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMID-- 414
             + V  WNA++ G A +   D A+ LF +M  E +  P+  TFA VL AC    +    
Sbjct: 597 VRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDK 656

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G+     +++ +G D  V++   ++D+  R G +  ++ +   M  + +   W  ++  
Sbjct: 657 EGIHGYI-VKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITG 712

Query: 475 C 475
           C
Sbjct: 713 C 713


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 365/658 (55%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  ++ +    + +    +V  +A  R    + A K+F+ + + ++  WN+++    
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCR--QIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L   M     +P+  T  TV  A +       G  +H + ++ G    V+
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           + ++   MY+  G V  AR I D   +  V+ WN+++DGY++                  
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 212 -----------------CGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEAR 250
                             GD+E  K + K     N GS     N++IS +++  R + A 
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +FN +N +  ++W+A+I GY ++G   EAL  F+EM+   +KP  F +  V+ A A L 
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 WIH  + R+ +  +  + TALVDMY+KCG + MA K+F+ +  + V TWNAMI 
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    A++LF KM++  + P+ IT+  V+SAC+H+G++D GL+    M+Q YG++
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRAG + EA + I +MP+ P   V+ A+LGAC+ H  +E GE+  K 
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKK 644

Query: 491 LLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L E+ P                 +   VA++RK M+++G+K  PG S++++   +H F +
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HPQ K IY  L++++ ++K  GY P+++ +L D++++ +E     HSEKLAIAFG 
Sbjct: 705 GSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGL 763

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG TI V KNLRVC DCH+ATK IS V  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 764 LNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 245/550 (44%), Gaps = 82/550 (14%)

Query: 10  LPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSG 69
           LP H   E     +IP+  +       +L   C TS + L Q   +++K+G + +H    
Sbjct: 32  LPFHTLSER---AHIPSHVYKHPAA--VLLELC-TSMKELHQIIPLVIKNGLYNEHLFQT 85

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            LV     S++ +   A +VF  +      +++++L+   +++     ++    M   D 
Sbjct: 86  KLVSLF--SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP  + +  + K C      K G ++H  ++ N    +V   +  + MYA    ++ A +
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---------------------- 227
           + D   + D++ WN +I G+ + G  + A EL    +D                      
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 228 ----KNTGSYNAMISGFARF--------------GRFEEARKLFNEMNDKDEITWSAIID 269
               K+   Y A+ +GFA+               G  E AR +F+ M+ K  ++W++++D
Sbjct: 264 LMVGKSIHGY-AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           GY ++G  ++A+ VF +M  + I P    +   L ACA LG L++G ++H  V + ++  
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  +  +L+ MY+KC R+D+A  +F ++  +   +WNAMI G A +GR  +A+  F +M+
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 390 REKMRPDRITFACVLSACA------HA----GMI-----DRGLQALTYMQQMYG------ 428
              M+PD  T   V+ A A      HA    G+I     D+ +   T +  MY       
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 429 ---------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACR 476
                     D  V  +  ++D  G  G    A ++   M    +EPN   + +++ AC 
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 477 KHGEVEFGER 486
             G V+ G R
Sbjct: 563 HSGLVDEGLR 572


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 358/628 (57%), Gaps = 86/628 (13%)

Query: 47  QHLKQAHAVILKSGHFQD----HYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           Q L+Q HA IL   H        ++   ++   A S F NF+ A K+F+ +  P +F +N
Sbjct: 2   QILRQIHARILT--HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYN 59

Query: 103 SVLRACLEHNEPWR-VISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           SV+R CL    P +  I L+ +MVG     PN FT   V KACSI  A +EG Q+HA ++
Sbjct: 60  SVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQIL 119

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           ++G     +V+SS                               L++ Y KC +I     
Sbjct: 120 RSGFSSSPYVQSS-------------------------------LVNFYSKCEEIT---- 144

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                                       ARK+F+E+ +++ + WSA++ GY + G   EA
Sbjct: 145 ---------------------------IARKVFDEITERNLVCWSAMVSGYARLGMINEA 177

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L +F EMQ   I+P +  L  VL+ACA +GALD G W+H ++K+  I VD  L TAL++M
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINM 237

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG ++ A ++F++M++K+   W++MI GLA+HG A+DA+ +F +M+  + +P+ +TF
Sbjct: 238 YAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTF 297

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +LSACAH G++  G +  + M ++ GI+P +EHYGC+VDLL R G + EA +    +P
Sbjct: 298 IGILSACAHGGLVSDGKRYWSSMLEL-GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP 356

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAK 506
             P+  +W  LL A  K+  ++  E +   LLE+EP                 + + V+ 
Sbjct: 357 -TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSH 415

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +RK+MKE GIK  PG + I+V+G +H F TGD SHP+ +EI   L+ +  K+ + GY P 
Sbjct: 416 VRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPF 475

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
            S VL  +++EEKE     HSE+LAIA+G + T   ATIR++KNLRVC DCH  TK+ISK
Sbjct: 476 VSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISK 535

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ R+IIVRDRVR+H F NG CSC D+W
Sbjct: 536 IYDREIIVRDRVRFHKFVNGTCSCKDYW 563


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 335/606 (55%), Gaps = 37/606 (6%)

Query: 86  ALKVFNSVHKPNVFVWNSVL------------RACLEHNEPWRVISLYSEMVGVDSKPNK 133
           A +VFN +   N   WN +L            R   E    W +IS    M G   +   
Sbjct: 158 AREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNML 217

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCG-----------DVHVKSSGIQMYACFG 182
                +F    + +       +  +     L             DV   ++ +  Y   G
Sbjct: 218 GDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNG 277

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
            V++AR+  D+    + I +NA++ GY++   +  A ELF++   +N  S+N MI+G+ +
Sbjct: 278 MVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQ 337

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G   +ARKLF+ M  +D ++W+AII GY ++G+Y+EAL +F EM+RD     +   SC 
Sbjct: 338 NGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCA 397

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+ CA + AL+ G  +H  V +        +G AL+ MY KCG  D A  VFE ++ K+V
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +WN MI G A HG    A+ LF  M++  ++PD IT   VLSAC+H+G+IDRG +    
Sbjct: 458 VSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYS 517

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M + Y + P  +HY C++DLLGRAG L EAE ++ +MP +P AA W ALLGA R HG  E
Sbjct: 518 MDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTE 577

Query: 483 FGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
            GE+  +++ +MEPQN               R  DV KMR  M+E G++   G S ++V 
Sbjct: 578 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQ 637

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
             IH F  GD  HP+   IY  L+++  K++ EGY  ++  VL D++EEEKE   KYHSE
Sbjct: 638 NKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 697

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLA+AFG +    G  IRV+KNLRVC+DCH+A K ISK+  R II+RD  R+HHF  G C
Sbjct: 698 KLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGIC 757

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 758 SCGDYW 763



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 50/450 (11%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL+VFNS+ + +   +N+++   L + +      L+ +M   D            +   +
Sbjct: 65  ALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRL 124

Query: 146 TEADK----------------------EGVQVHAHVVKNGLCGDVHVKSSG-IQMYACFG 182
            EA K                       G    A  V N +     +  +G +  Y   G
Sbjct: 125 GEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNG 184

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
            + +AR++ +  S  ++I WN L+ GY+K   +  A++LF     ++  S+N MISG+A+
Sbjct: 185 RLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQ 244

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS-- 300
            G   +A++LFNE   +D  TW+A++ GY ++G   EA + F+EM      P K  +S  
Sbjct: 245 VGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM------PVKNEISYN 298

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            +LA         + + I   +     C +      ++  Y + G +  A K+F+ M  +
Sbjct: 299 AMLAGYVQY----KKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQR 354

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +  +W A+I G A +G  ++A+ +F +M+R+    +R TF+C LS CA    ++ G Q  
Sbjct: 355 DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVH 414

Query: 421 TYMQQMYGIDPEVEHYGCIVD--LLG---RAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
             + +  G +      GC V   LLG   + G   EA +V   +  E +   W  ++   
Sbjct: 415 GQVVKA-GFET-----GCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGY 467

Query: 476 RKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
            +HG   FG +   +   M+    + D++ 
Sbjct: 468 ARHG---FGRQALVLFESMKKAGVKPDEIT 494



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 159/331 (48%), Gaps = 47/331 (14%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G  + A ++ +   +   + +NA+I GYL+      A++LF    +++  S+N M++G+ 
Sbjct: 60  GHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYV 119

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLS 300
           R  R  EA KLF+ M  KD ++W+A++ GY ++G+  EA EVFN+M  R+ I       +
Sbjct: 120 RNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSIS-----WN 174

Query: 301 CVLAACASLGAL--------DQGIW--------IHDHVKRNSI-----------CVDAVL 333
            +LAA    G L         Q  W        +  +VKRN +             D + 
Sbjct: 175 GLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVIS 234

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
              ++  YA+ G L  A ++F +  +++VFTW AM+ G   +G  D+A + F +M  +  
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-- 292

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAE 451
             + I++  +L     AG +    + +    +++   P   +  +  ++   G+ G +A+
Sbjct: 293 --NEISYNAML-----AGYVQ--YKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQ 343

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           A ++   MP + +   W A++    ++G  E
Sbjct: 344 ARKLFDMMP-QRDCVSWAAIISGYAQNGHYE 373



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 49/262 (18%)

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           KD +  ++N  IS   R G  + A ++FN M  +  ++++A+I GY ++  +  A ++F+
Sbjct: 42  KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +M      P + + S                W                   ++  Y +  
Sbjct: 102 KM------PERDLFS----------------W-----------------NVMLTGYVRNR 122

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RL  A K+F+ M  K+V +WNAM+ G A +G  D+A E+F KM       + I++  +L+
Sbjct: 123 RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLA 178

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           A  H G +    +             E+  + C++    +   L +A ++   MP+  + 
Sbjct: 179 AYVHNGRLKEARRLFESQSNW-----ELISWNCLMGGYVKRNMLGDARQLFDRMPVR-DV 232

Query: 466 AVWEALLGACRKHGEVEFGERL 487
             W  ++    + G++   +RL
Sbjct: 233 ISWNTMISGYAQVGDLSQAKRL 254


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 367/679 (54%), Gaps = 118/679 (17%)

Query: 25  PTSEFSQKTI-----LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSR 79
           PTS+   K +     L +L+T C  S+Q+LKQ H+ I+K+G     +    L++  A S 
Sbjct: 21  PTSDPPYKLLQNHPSLTLLST-CK-SFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISP 78

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           F N   AL +F S+ +PN F+WN+++R     + P   I  Y  M+    +PN +T+P +
Sbjct: 79  FGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA-------------------- 179
            K+C+   A +EG Q+H HV+K GL  D  V +S I MYA                    
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 180 -----------CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
                        GC++ AR++ ++    D + WNA+I GY + G  E A   F+  K  
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 229 N-----------------TGSY----------------------NAMISGFARFGRFEEA 249
           N                 +GS                       NA+I  +++ G  ++A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R LF  + +KD I+W+ +I GY+    YKEAL +F +MQ+  ++P       +L ACA L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 310 GALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           GALD G WIH ++ +  +   +  L T+L+DMYAKCG ++ A +VF  MK K + +WNAM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GLAMHG A+ A+ELF +M+ E   PD ITF  VLSAC+HAG+++ G Q  + M + Y 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P+++HYGC++DLLGRAG   EAE ++ +M M+P+ A+W +LLGACR HG VE GE   
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K L E+EP+N               R DDVA++R  + ++G+K                 
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK----------------- 601

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKL-KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
                   + ++IY ML +I +   +  G  P++S+VL+D+DEE KE +  +HSEKLAIA
Sbjct: 602 --------KXQDIYKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSLSHHSEKLAIA 653

Query: 594 FGFINTDPGATIRVIKNLR 612
           FG I+T P  TIR++KNLR
Sbjct: 654 FGLISTKPETTIRIVKNLR 672


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/687 (33%), Positives = 380/687 (55%), Gaps = 58/687 (8%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           + +P    +   IL ++ +  H      KQ H  +++ G  Q   V+ + +  +  +   
Sbjct: 291 SRVPCDSLTYIVILSVVASLNHLELG--KQIHGAVVRFGWDQFVSVANSAINMYVKAGSV 348

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N+  A ++F  + + ++  WN+V+  C         + L+ +++     P++FT  +V +
Sbjct: 349 NY--ARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLR 406

Query: 142 ACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           ACS + E+   G QVH   +K G+  D  V ++ I +Y+  G + +A  +  +    D+ 
Sbjct: 407 ACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLA 466

Query: 201 CWNALIDGYLKCGDIEGAKELF-----KSTKDKNTGSYNA-------------------- 235
            WNA++ G+    +   A  LF     +  K       NA                    
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 236 ----------MISG----FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                     +ISG    + + G  + ARK+FN++   D++ W+ +I G  ++G  ++AL
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
             +++M+   ++P ++  + ++ AC+ L AL+QG  IH ++ + +   D  + T+LVDMY
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMY 646

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG ++ A+ +F  M  + V  WNAMI GLA HG A++A+  F +M+   + PDR+TF 
Sbjct: 647 AKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFI 706

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSAC+H+G+     +    MQ+ YG++PE+EHY C+VD L RAG++ EAE+V+SSMP 
Sbjct: 707 GVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF 766

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           E +A ++  LL ACR  G+ E GER+ + L  M+P +               + ++    
Sbjct: 767 EASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSA 826

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R +MK   +K  PG S ID+   +H F  GD SH +   IY  ++ +++++K EGY P++
Sbjct: 827 RNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDT 886

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L DI+EE+KE+A  YHSEKLAIA+G + T P  T+RVIKNLRVC DCH+A K IS V
Sbjct: 887 EFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNV 946

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           F+R+I++RD  R+HHFR+G CSC D+W
Sbjct: 947 FQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 216/451 (47%), Gaps = 31/451 (6%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q +AV  K G   D +V+G LV  +A  +F     A  +F+ +   +V +WN +++A +E
Sbjct: 145 QGYAV--KIGLQWDVFVAGALVNIYA--KFQRIREARVLFDRMPVRDVVLWNVMMKAYVE 200

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI-TEADKEGVQVHAHVVKNGLC---G 166
                 V+ L+S       +P+  +  T+       T  ++E  QV A+  K  +C    
Sbjct: 201 MGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDS 260

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC----WNALIDGYLKCGDIEGAKELF 222
           DV V +  +  Y   G   +A     D  KS V C    +  ++        +E  K++ 
Sbjct: 261 DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIH 320

Query: 223 KSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            +      D+     N+ I+ + + G    AR++F +M + D I+W+ +I G  + G  +
Sbjct: 321 GAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEE 380

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLG-ALDQGIWIHDHVKRNSICVDAVLGTAL 337
            +L +F ++ R  + P +F ++ VL AC+SL  +   G  +H    +  I +D+ + TAL
Sbjct: 381 CSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTAL 440

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +D+Y+K G+++ A  +F +    ++ +WNAM+ G  +     +A+ LF  M     + D+
Sbjct: 441 IDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQ 500

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE-HYGC-----IVDLLGRAGYLAE 451
           ITFA   +A   AG + R  Q     +Q++ +  ++  HY       I+D+  + G +  
Sbjct: 501 ITFA---NAAKAAGCLVRLQQG----KQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKS 553

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           A +V + +P  P+   W  ++  C ++GE E
Sbjct: 554 ARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 32/384 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHA--NSRFSNFELALKVFNSVHKPN--VFVWNSVL 105
           K+ HAVI+ SG   D YV+  L+  +A   S FS    A K+F+   + +  +  +N++L
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS----ARKLFDITPQSDRDLVTYNAIL 88

Query: 106 RACL---------EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
            A           + +E + +  L  + V + ++    T   +FK C +  +      + 
Sbjct: 89  AAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTR---HTLSPLFKLCLLYGSPSASEALQ 145

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
            + VK GL  DV V  + + +YA F  + +AR + D     DV+ WN ++  Y++ G  +
Sbjct: 146 GYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGD 205

Query: 217 GAKELF----KSTKDKNTGSYNAMISGFARFGRFEE--------ARKLFNEMNDKDEITW 264
               LF    +S    +  S   ++ G  +   FE         A KLF   +D D   W
Sbjct: 206 EVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVW 265

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +  +  Y + G   EA++ F +M + ++         +L+  ASL  L+ G  IH  V R
Sbjct: 266 NKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR 325

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                   +  + ++MY K G ++ A ++F  MK  ++ +WN +I G A  G  + ++ L
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385

Query: 385 FFKMQREKMRPDRITFACVLSACA 408
           F  + R  + PD+ T   VL AC+
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRACS 409



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 9/208 (4%)

Query: 234 NAMISGFARFGRFEEARKLFN--EMNDKDEITWSAIIDGYTKDGYYK------EALEVFN 285
           N +I+ +A+ G    ARKLF+    +D+D +T++AI+  Y   G         EA  +F 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            +++  +   +  LS +   C   G+      +  +  +  +  D  +  ALV++YAK  
Sbjct: 112 LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQ 171

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           R+  A  +F+ M +++V  WN M+      G  D+ + LF    R  +RPD ++   +L 
Sbjct: 172 RIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILM 231

Query: 406 ACAHAGMIDRGL-QALTYMQQMYGIDPE 432
                 + +R L Q   Y  +++  D +
Sbjct: 232 GVGKKTVFERELEQVRAYATKLFVCDDD 259



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 150/383 (39%), Gaps = 76/383 (19%)

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS--DVICWNALIDGY 209
           G + HA +V +GL  D +V ++ I MYA  G +  AR++ D   +S  D++ +NA++  Y
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 210 LKCG---DIEGAKELFK-----------STKDKNTGSY---------------------- 233
              G   D+E   E F            +T+   +  +                      
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 234 ---------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                     A+++ +A+F R  EAR LF+ M  +D + W+ ++  Y + G   E L +F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           +   R  ++P           C S+  +  G+      +R    V A             
Sbjct: 212 SAFHRSGLRPD----------CVSVRTILMGVGKKTVFERELEQVRA------------- 248

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
                A K+F      +V  WN  +      G   +A++ F  M + ++  D +T+  +L
Sbjct: 249 ----YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVIL 304

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           S  A    ++ G Q    + + +G D  V      +++  +AG +  A  +   M  E +
Sbjct: 305 SVVASLNHLELGKQIHGAVVR-FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK-EVD 362

Query: 465 AAVWEALLGACRKHGEVEFGERL 487
              W  ++  C + G  E   RL
Sbjct: 363 LISWNTVISGCARSGLEECSLRL 385


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/629 (37%), Positives = 342/629 (54%), Gaps = 63/629 (10%)

Query: 89  VFNS-VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +FN  V K +VF WNSV+       +    +  +S M  +   P + ++P   KACS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G Q H      G   D+ V S+ I MY+  G +  AR++ D+  K +++ W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 208 GYLKCGDIEGAKELFKSTK----------------------------------------- 226
           GY   G+   A  LFK                                            
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 227 ----DKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
               D+     N ++  +A+ G      ARK+F+++ DKD +++++I+  Y + G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 281 LEVFNEMQRDKIKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            EVF  + ++K+       LS VL A +  GAL  G  IHD V R  +  D ++GT+++D
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCGR++ A K F+ MK K V +W AMI G  MHG A  A+ELF  M    +RP+ IT
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC+HAG+   G +    M+  +G++P +EHYGC+VDLLGRAG+L +A ++I  M
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
            M+P++ +W +LL ACR H  VE  E     L E++  N               R  DV 
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R +MK RG+   PG S++++NG +H F  GD  HPQ ++IY  L ++  KL   GY  
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           N+S V  D+DEEEKE   + HSEKLAIAFG +NT PG+T+ V+KNLRVC DCH+  KLIS
Sbjct: 571 NTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLIS 630

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+  R+ +VRD  R+HHF++G CSC D+W
Sbjct: 631 KIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 159/378 (42%), Gaps = 56/378 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H      G+  D +VS  L+  ++       E A KVF+ + K N+  W S++R   
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTC--GKLEDARKVFDEIPKRNIVSWTSMIRGYD 153

Query: 110 EHNEPWRVISLYSEMVGVDSKP-------NKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
            +      +SL+ +++ VD          +     +V  ACS   A      +H+ V+K 
Sbjct: 154 LNGNALDAVSLFKDLL-VDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 163 GLCGDVHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           G    V V ++ +  YA    G V  AR+I D     D + +N+++  Y + G    A E
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFE 272

Query: 221 LFKSTKDKNTGSYNA----------------------------------------MISGF 240
           +F+        ++NA                                        +I  +
Sbjct: 273 VFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMY 332

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + GR E ARK F+ M +K+  +W+A+I GY   G+  +ALE+F  M    ++P      
Sbjct: 333 CKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFV 392

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMK 358
            VLAAC+  G   +G W   +  +    V+  L     +VD+  + G L  A+ + + MK
Sbjct: 393 SVLAACSHAGLHVEG-WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMK 451

Query: 359 MK-EVFTWNAMIGGLAMH 375
           MK +   W++++    +H
Sbjct: 452 MKPDSIIWSSLLAACRIH 469


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 316/529 (59%), Gaps = 17/529 (3%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV-KCHANSRFSNFE 84
           +S F    IL     +  TS   L QAHA ILKSG     + +  L+     NS      
Sbjct: 2   SSSFPPPPILSF--AEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP 59

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A  +F+ +  PN ++WN+++RA      P   ++++ +M+     P+K+T+    K+C 
Sbjct: 60  YAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCG 119

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                +EG Q+H HV+K GL  D+ ++++ I +YA  GC+  AR +LD   + DV+ WNA
Sbjct: 120 SFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNA 179

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+  Y + G +E A  LF    ++N  S+N MISG+   G  EEAR++F E   K+ ++W
Sbjct: 180 LLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSW 239

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +A+I GY+  G + E L +F +MQ   +KP    L  VL+ACA +GAL QG W+H ++ +
Sbjct: 240 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N I +D  + TALVDMY+KCG ++ A +VF     K++ TWN++I GL+ HG    A+++
Sbjct: 300 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 359

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M  E  +P+ +TF CVLSAC+ AG++D G +    M  ++GI P +EHYGC+VDLLG
Sbjct: 360 FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLG 419

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           R G L EAEE++  MP +  + VWE+LLGACR HG VE  ER+ + LLE+ PQ       
Sbjct: 420 RVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQ 479

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
                    R  DV ++R+ M+ +G++ +PG SMI+V+G ++EF  G+G
Sbjct: 480 LSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGEG 528


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/661 (35%), Positives = 361/661 (54%), Gaps = 35/661 (5%)

Query: 21  ATNIPTSEFSQKT--------ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
            +++P  E  QK         +  +L+T  +   + L+  H+ I+      +  +   L+
Sbjct: 25  TSSVPKLELDQKNSPKETAFMLGQVLDT--YPDLKTLRTVHSRIISEDLRYNSSLGVKLM 82

Query: 73  KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
           + +A+    +   A KVF+ + + NV + N ++R+ + +      I ++  M     KP+
Sbjct: 83  RAYAS--LKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
            +T+P V KACS +     G ++H    K GL   + V +  + MY   G +++AR +LD
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG--RF 246
           + S+ DV+ WN+L+ GY +    + A E+ +  +      + G+  +++   +       
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              + +F +M  K  ++W+ +I  Y K+    EA+E+++ M+ D  +P    ++ VL AC
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
               AL  G  IH +++R  +  + +L  AL+DMYAKCG LD A  VFE+MK ++V +W 
Sbjct: 321 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI      GR  DA+ LF KMQ   + PD I F   L+AC+HAG+++ G      M   
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           Y I P +EH  C+VDLLGRAG + EA + I  MPMEPN  VW ALLGACR H   + G  
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500

Query: 487 LGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
               L ++ P+                R ++V  +R +MK +G+K NPG+S ++VN +IH
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 560

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F  GD SHPQ  EIY  L  +++K+K  GY P+S   L D++EE+KET    HSEKLAI
Sbjct: 561 TFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 620

Query: 593 AFGFINT---DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
            F  +NT   D    IR+ KNLR+C DCH A KLIS++  R+II+RD  R+H FR G CS
Sbjct: 621 VFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCS 680

Query: 650 C 650
           C
Sbjct: 681 C 681


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 358/636 (56%), Gaps = 53/636 (8%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHK 95
           I+ + C T+  H KQ HA I ++   Q  YV   L++                +F+ VH 
Sbjct: 16  IIESHC-TTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHS 74

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           PN F++++++RA   +      I LY+ M+  +  P  FT+  +F   S+ +    G Q+
Sbjct: 75  PNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQL 131

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           H H    G   D++V ++ I MY  F                          G L C   
Sbjct: 132 HLHAFLFGFVNDLYVGNTIIHMYVKF--------------------------GVLDC--- 162

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
             A+++F     ++  ++  +I  +AR G  + A +LF  +  KD + W++++ GY+++ 
Sbjct: 163 --ARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNA 220

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD--HVKRNSICVDAVL 333
             K+AL+ F +M+   +   +  L   ++ACA LG      WI +     R     +  +
Sbjct: 221 MPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFV 280

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           G+AL+DMY+KCG ++ A+ VF+ MK   VF++++MI G A+HGRA  AI+LF++M    +
Sbjct: 281 GSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGI 340

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +P+ +TF  + +AC+HAGM+++G Q    M++ YG+ P  +HY C+ DLLGRAG+L +A 
Sbjct: 341 KPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKAL 400

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------R 499
           +++ +MPMEPN  VW ALLGA   HG  +  E   + L E+EP N               
Sbjct: 401 QLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAA 460

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDV-NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
           + DDV+++RKLM+E+ ++ NPG S ++  NG+IHEF  GD  HP++ EI   L  ++++L
Sbjct: 461 KWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRL 520

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           K  GY P  + V +DID+E K      HSEKLA+A+G ++TD G+TI+++KNLR+CEDCH
Sbjct: 521 KCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCH 580

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
                 SK+  R IIVRD +R+HHF NG CSCN+FW
Sbjct: 581 IVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/662 (35%), Positives = 361/662 (54%), Gaps = 55/662 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-HKPNVFVWNSVL 105
           +H K AH  +L+     D+ +   +++   N   +N +  + VF+      N F++N+++
Sbjct: 18  KHAKLAHCRLLRLNLHHDNDLLSIILRSTINFS-NNAQYPILVFHKTPTNSNTFLYNTMI 76

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R  +  +     + LY+ M      P+ FT+  V KAC+       GV +H+ V K G  
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV VK++ +  Y+  G +  A ++ DD    +V+ W  +I G ++ G    A +LF+  
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGL 196

Query: 226 KD---------------------------------------KNTGSYNAMISGFARFGRF 246
            +                                       +N     +++  + + G  
Sbjct: 197 LESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSM 256

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EEAR +F+ M +KD + WSA+I GY  +G  +EA+E+F EM++  ++P  + +   L++C
Sbjct: 257 EEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSC 316

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           ASLGAL+ G W    +       + VLGT+L+D YAKCG ++ A  V++ MK K+   +N
Sbjct: 317 ASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFN 376

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           A+I GLAM+G+   A  +F +M +  + P+  TF  +L  C HAG++D G      M   
Sbjct: 377 AVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHD 436

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + + P +EHYGC+VDLL RAG+L EA  +I  MPM+ N  VW +LLG CR H E +  E 
Sbjct: 437 FSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEH 496

Query: 487 LGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + K L+E+EP N              RR D+  K+R  + E+G++  PG S ++V+GV+H
Sbjct: 497 VLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVH 556

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           EF  GD SHP  ++IY  L+ + + LK  GY+P +  VLFD++EEEKE     HSEKLA+
Sbjct: 557 EFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAV 616

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AF  I+T     IRV+KNLRVC DCH A K ISKV  R+I++RD  R+H F +G CSC D
Sbjct: 617 AFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRD 676

Query: 653 FW 654
           +W
Sbjct: 677 YW 678


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/647 (35%), Positives = 358/647 (55%), Gaps = 79/647 (12%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           N    E    +IL ++  KC TS + LKQ  A  +K+       ++  +  C +N   ++
Sbjct: 27  NTAALEPPSSSILSLI-PKC-TSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIAS 84

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            + A ++F+ + +P++ ++N++ R     ++P R I L S+++     P+ +T+ ++ KA
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKA 144

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+  +A +EG Q+H   VK G+         G  MY C                      
Sbjct: 145 CARLKALEEGKQLHCLAVKLGV---------GDNMYVC---------------------- 173

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
             LI+ Y  C D++ A                               R++F+++ +   +
Sbjct: 174 PTLINMYTACNDVDAA-------------------------------RRVFDKIGEPCVV 202

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
            ++AII    ++    EAL +F E+Q   +KP    +   L++CA LGALD G WIH++V
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYV 262

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           K+N       + TAL+DMYAKCG LD A  VF+DM  ++   W+AMI   A HG    AI
Sbjct: 263 KKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAI 322

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            +  +M++ K++PD ITF  +L AC+H G+++ G +    M   YGI P ++HYGC++DL
Sbjct: 323 SMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDL 382

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME------- 495
           LGRAG L EA + I  +P++P   +W  LL +C  HG VE  + + + + E++       
Sbjct: 383 LGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDY 442

Query: 496 -------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                   +N R DDV  +RK+M ++G    PG S I+VN V+HEF +GDG H     ++
Sbjct: 443 VILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILH 502

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
             L +++++LK+ GY P++S V + DI++EEKE   +YHSEKLAI +G +NT PG TIRV
Sbjct: 503 HALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRV 562

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +KNLRVC DCH+A K IS +F R II+RD  R+HHF++GKCSC D+W
Sbjct: 563 VKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/616 (36%), Positives = 350/616 (56%), Gaps = 60/616 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           +A I+++ H QD +V   L++  +N   ++   A K+F+    PNV+++ +++   +   
Sbjct: 52  YAKIIRNHHHQDPFVVFELLRVCSN--LNSIGYASKIFSHTQNPNVYLYTALIDGLVLSC 109

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                I LY +M+     P+ +   +V KAC    A KEG +VH+ V+K GL  +  ++ 
Sbjct: 110 YYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRI 169

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS 232
             I++Y                                KCG  E A+ +F    +++  +
Sbjct: 170 KLIELYG-------------------------------KCGAFEDARRVFDEMPERDVVA 198

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
              MI+ +   G              KD + W+A+IDG  ++G    ALEVF  MQR+ +
Sbjct: 199 STVMINYYFDHG-------------IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDV 245

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P +  + CVL+AC+ LGAL  G W+  ++ ++ I ++  +G AL++MY++CG +D A +
Sbjct: 246 MPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQR 305

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VFE MK K V T+N+MI G A+HG++ +A+ELF  + ++   P  +TF  VL+AC+H G+
Sbjct: 306 VFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGL 365

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            + G +    M + YGI+P++EHYGC+VDLLGR G L EA   I  M + P+  +  ALL
Sbjct: 366 AELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALL 425

Query: 473 GACRKHGEVEFGERLGKILLEME--------------PQNRRCDDVAKMRKLMKERGIKT 518
            AC+ HG +E  ER+ K L+  +                + +  + A++R  M+E GI+ 
Sbjct: 426 SACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEK 485

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PG S I+VN  IHEF  GD  HPQ ++IY  L+++ + L++EGY+P +  VL DI++ E
Sbjct: 486 EPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSE 545

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KE A   HSE+LAI +G I+T P  T+RV+KNLRVC DCH   KLIS + +R I+VRDR 
Sbjct: 546 KEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRN 605

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHF NG CSC D+W
Sbjct: 606 RFHHFENGVCSCGDYW 621


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 350/661 (52%), Gaps = 61/661 (9%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+  HA+ + SG   D++V+  L K +     S    A KVF++V  P+  +WN++L A 
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFT--LSRGNDARKVFDAVPSPDTVLWNTLL-AG 198

Query: 109 LEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           L  +E    +  +  M G  S +P+  T  +V  A +       G  VHA   K GL   
Sbjct: 199 LSGSE---ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQH 255

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK---- 223
            HV +  I +YA  G +  AR + D     D++ +NALI GY   G +  + ELFK    
Sbjct: 256 EHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVG 315

Query: 224 -----------------------------------STKDKNTGSYNAMISGFARFGRFEE 248
                                              +  D N     A+ + + RF   + 
Sbjct: 316 MGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDS 375

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR+ F+ M +K   +W+A+I GY ++G  + A+ +F +MQ   ++P    +S  L+ACA 
Sbjct: 376 ARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL  G W+H  +    + ++  + TAL+DMY KCG +  A  +F+ M  K V +WN M
Sbjct: 436 LGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVM 495

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G  +HG+  +A++L+  M    + P   TF  VL AC+H G++  G      M   YG
Sbjct: 496 ISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYG 555

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGEVEFGERL 487
           I P +EH  C+VDLLGRAG L EA E+IS  P       +W ALLGAC  H + +  +  
Sbjct: 556 ITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLA 615

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + L E+EP+N              ++  + A +R+  K R +   PG ++I++    H 
Sbjct: 616 SQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHV 675

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD +HPQ   IYL L+K+  K+   GY P++   L+D++EEEKE   K HSEKLAIA
Sbjct: 676 FMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIA 735

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG +NT+PG  IR+IKNLRVC DCH+ATK+ISKV +R I+VRD  R+HHFR+G CSC D+
Sbjct: 736 FGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDY 795

Query: 654 W 654
           W
Sbjct: 796 W 796



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 220/489 (44%), Gaps = 71/489 (14%)

Query: 44  TSWQHLKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           ++  HL Q  AV L SGH+  DH  + +L+  +A+ R     L L+++ +  +P+ F+ N
Sbjct: 35  STLGHLDQLLAVSLASGHYTLDHAPASSLLLRYASLRSPPAHL-LRLYRAFPRPDRFLRN 93

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG---------- 152
           S+LR+         + +L +++  +   P+ F++   F A S+  +   G          
Sbjct: 94  SLLRS---------LPTLRADL--LFPSPDSFSF--AFAATSLASSCSRGGISPPSAASA 140

Query: 153 --VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
               +HA  V +G   D  V S+  ++Y      N AR++ D     D + WN L+ G  
Sbjct: 141 ALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS 200

Query: 211 KCGDIE-----------------------GAKELFKSTKDKNTGSY-------------N 234
               +E                        A E+  +T  +   ++              
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVT 260

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            +IS +A+ G  E AR LF+ M   D +T++A+I GY+ +G    ++E+F E+    ++P
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               L  ++   +  G       +H HV +  +  +A + TAL  +Y +   +D A + F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           + M  K + +WNAMI G A +G  + A+ LF +MQ   +RP+ +T +  LSACA  G + 
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 415 RGLQALTYMQQMYG---IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            G     ++ ++     ++  V     ++D+  + G +AEA  +  SM  + N   W  +
Sbjct: 441 LG----KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVM 495

Query: 472 LGACRKHGE 480
           +     HG+
Sbjct: 496 ISGYGLHGQ 504


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/656 (36%), Positives = 364/656 (55%), Gaps = 57/656 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA I K GH  + +V   L+  +A     N   A + F+++   ++  W  ++ AC   N
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNS--ARQAFDAIACKDMVSWTGMV-ACYAEN 120

Query: 113 EPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
           + ++  + L++EM  V   PN FT+  V KAC   EA   G  VH  V+K     D++V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----- 226
              + +Y  FG  N   ++ ++  K DVI W+ +I  Y +      A ELF   +     
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 227 ----------------------------------DKNTGSYNAMISGFARFGRFEEARKL 252
                                             D N    NA++  +A+ GR + + KL
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F E+ +++E+TW+ +I GY + G   +AL ++  M   +++  +   S VL ACASL A+
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
           + G  IH    +     D V+G AL+DMYAKCG +  A  VF+ +  ++  +WNAMI G 
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           +MHG   +A++ F  MQ  +  P+++TF  +LSAC++AG++D G      M Q YGI+P 
Sbjct: 421 SMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPC 480

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +EHY C+V LLGR+G+L +A ++I  +P+EPN  VW ALLGAC  H +V+ G    + +L
Sbjct: 481 MEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQIL 540

Query: 493 EMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           +++PQ+              RR + VA +RK MK +G+K  PG S I+  G++H F  GD
Sbjct: 541 QIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGD 600

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHP +K I  ML+ +  K +  GY P+ + VL D++++EK+     HSE+LA+AFG I 
Sbjct: 601 TSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIR 660

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T     IR++KNLR+C DCHSA KLISK+ +RDII+RD  R+HHF++G CSC D+W
Sbjct: 661 TPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 190/421 (45%), Gaps = 45/421 (10%)

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
           V+ L+S +     + N F + T+ K     E  +    +HA + K G   +  V ++ I 
Sbjct: 25  VVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALID 84

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGS 232
            YA  G VN ARQ  D  +  D++ W  ++  Y +    + + +LF   +    + N  +
Sbjct: 85  AYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFT 144

Query: 233 YNAMISG-----------------------------------FARFGRFEEARKLFNEMN 257
           +  ++                                     + +FG   +  ++F EM 
Sbjct: 145 FAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP 204

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
             D I WS +I  Y +    +EA+E+F +M+R  + P +F  + VL +CAS+  L  G  
Sbjct: 205 KHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQ 264

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H HV +  +  +  +  AL+D+YAKCGRLD + K+F ++  +   TWN MI G    G 
Sbjct: 265 VHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGD 324

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHY 436
            D A+ L+  M   +++   +T++ VL ACA    ++ G Q  +  ++ +Y  D +V   
Sbjct: 325 GDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY--DKDVVVG 382

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
             ++D+  + G +  A  ++  M  E +   W A++     HG V  GE L    +  E 
Sbjct: 383 NALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLV--GEALKAFQMMQET 439

Query: 497 Q 497
           +
Sbjct: 440 E 440



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 184/376 (48%), Gaps = 47/376 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  +LK+ +  D YV   L+  +  ++F +    L+VF  + K +V  W+ ++    
Sbjct: 162 KSVHGCVLKTCYEMDLYVGVGLLDLY--TKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + N+    + L+ +M      PN+FT+ +V ++C+  E  + G QVH HV+K GL G+V 
Sbjct: 220 QSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVF 279

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ + +YA  G ++ + ++  +    + + WN +I GY++ GD + A  L+       
Sbjct: 280 VSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ 339

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+  DK+    NA+I  +A+ G  + AR
Sbjct: 340 VQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR 399

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+ ++++DEI+W+A+I GY+  G   EAL+ F  MQ  +  P K     +L+AC++ G
Sbjct: 400 LVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAG 459

Query: 311 ALDQGI-WIHDHVKRNSI--CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWN 366
            LD G  +    V+   I  C++    T +V +  + G LD A K+ E++ ++  V  W 
Sbjct: 460 LLDIGQNYFKSMVQDYGIEPCMEHY--TCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWR 517

Query: 367 AMIGGLAMHGRADDAI 382
           A++G   +H   D  I
Sbjct: 518 ALLGACVIHNDVDLGI 533



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M D++ +++  +I GY +     E +++F+ + R+  +   FV + +L    S+   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             +H  + +     +A +GTAL+D YA CG ++ A + F+ +  K++ +W  M+   A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            R  D+++LF +M+     P+  TFA VL AC        GL+A +  + ++G
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHG 166


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/701 (35%), Positives = 372/701 (53%), Gaps = 93/701 (13%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK-PNVFVWNS 103
           S  H+KQ HA IL++    +H ++  L     +S   N   AL +F+S+   P   V+NS
Sbjct: 27  SLNHIKQLHAHILRT--VINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVFNS 84

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV---- 159
           +LR      EP   I  Y  +  V  + ++ ++P + KA S   A  EG+++H       
Sbjct: 85  LLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIA 144

Query: 160 ------VKNGL------CG---------------DVHVKSSGIQMYACFGCVNKARQILD 192
                 V+ GL      CG               DV   ++ I+ Y  FG +++A ++ +
Sbjct: 145 TLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFE 204

Query: 193 DGSKSDVI---------------------------------------CWNALIDGYLKCG 213
           +   S+V+                                          AL+  Y   G
Sbjct: 205 EMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAG 264

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
            ++ A E F+    +N     AM+SG+++ GR ++AR +F++   KD + W+ +I  Y +
Sbjct: 265 CMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAE 324

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
             + +EAL VF EM    IKP    +  V++AC +LG LD+  W+H +   N +     +
Sbjct: 325 SDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPI 384

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             AL++MYAKCG LD A  VFE M  + V +W++MI   AMHG A D++ LF +M++E +
Sbjct: 385 DNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENV 444

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            P+ +TF  VL  C+H+G+++ G +    M   Y I P++EHYGC+VDL GRA  L EA 
Sbjct: 445 EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREAL 504

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNR 499
           EVI SMPM PN  +W +L+ ACR HGE+E GE   K +L++EP              +  
Sbjct: 505 EVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREY 564

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R D V  +R +M+++ +    G S ID+NG  HEF  GD  H Q  EIY  L +++ KLK
Sbjct: 565 RWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLK 624

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG------ATIRVIKNLRV 613
           + GY P+   VL D++EEEK+    +HSEKLA+ FG +N +          IR++KNLRV
Sbjct: 625 LAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRV 684

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CEDCH+  KL+SKV++ +IIVRDR R+H +++G CSC D+W
Sbjct: 685 CEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 28/226 (12%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L T     W H +  H   L+S    D+ +     KC         + A  VF  +   N
Sbjct: 360 LGTLDKAKWVH-RYTHLNGLESVLPIDNALINMYAKC------GGLDAARDVFEKMPTRN 412

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
           V  W+S++ A   H E    +SL+++M   + +PN+ T+  V   CS +   +EG ++ A
Sbjct: 413 VVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 472

Query: 158 HVVKNGLCGDVHVKSSGIQMYAC----FGCVNKARQILDD----GSKSDVICWNAL---- 205
            +       D +  +  I+ Y C    FG  N  R+ L+         +V+ W +L    
Sbjct: 473 SMT------DEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSAC 526

Query: 206 -IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            + G L+ G++  AK + K   D + G+   M + +AR  R++  R
Sbjct: 527 RVHGELELGEL-AAKRILKLEPDHD-GALVLMSNIYAREYRWDYVR 570


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/590 (38%), Positives = 335/590 (56%), Gaps = 21/590 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + E A  VF  +       WN++L     + +    +    E+     +P+  +Y  
Sbjct: 85  RACDLESARNVFEKMSVRTTVTWNTMLSG---YTKVAGKVKEAHELFDKIPEPDSVSY-N 140

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +   C +      GV+            D+   ++ I  +A  G + KA  +     + +
Sbjct: 141 IMLVCYLRSY---GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKN 197

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + W+A+I GY++ GD+E A+EL+K+   K+     AM++G+ +FG+ E A ++F  M  
Sbjct: 198 GVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAV 257

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K+ +TW+++I GY ++   ++ L+VF  M   +++P    LS VL  C++L AL  G  +
Sbjct: 258 KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQM 317

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  V ++ +  D    T+L+ MY KCG LD AWK+F +M  K+V TWNAMI G A HG  
Sbjct: 318 HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAG 377

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
             A+ LF KM+   M+PD ITF  V+ AC HAG +D G+Q    M++ +GI+ +  HY C
Sbjct: 378 RKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTC 437

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGRAG L EA  +I  MP  P+AA++  LLGACR H  ++  E   + LL ++P +
Sbjct: 438 VIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTS 497

Query: 499 --------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + D VAK+RK+MKE  +   PG S I++  V HEFR+ D  HP++
Sbjct: 498 ATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPEL 557

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
             I+  L ++  K+K+ GY P+    L D++EE KE    +HSEKLAIAFG + T PG  
Sbjct: 558 TSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTP 617

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV KNLRVC DCH A K IS + KR+IIVRD  R+HHFRNG CSC D+W
Sbjct: 618 IRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 155/322 (48%), Gaps = 52/322 (16%)

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF-GRFEEARKL- 252
           + SDV+  N  I  +++  D+E A+ +F+    + T ++N M+SG+ +  G+ +EA +L 
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 253 ------------------------------FNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                         FN+M  KD  +W+ +I G+ ++G  ++A +
Sbjct: 129 DKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFD 188

Query: 283 VFNEMQRDKIKPRK--FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +F+ M      P K     S +++     G L+    ++ +V   S+ V+    TA++  
Sbjct: 189 LFSVM------PEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TAMLTG 238

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y K G++++A ++F+ M +K + TWN+MI G   + RA+D +++F  M   ++RP+ ++ 
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDP---EVEHYGCIVDLLGRAGYLAEAEEVIS 457
           + VL  C++   +  G Q    M Q+    P   +      ++ +  + G L  A ++  
Sbjct: 299 SSVLLGCSNLSALPLGRQ----MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFL 354

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
            MP + +   W A++    +HG
Sbjct: 355 EMPRK-DVITWNAMISGYAQHG 375


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/627 (36%), Positives = 347/627 (55%), Gaps = 65/627 (10%)

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           V K +V+ WNS++       +  + +  +S M  +   PN+ T+P   K+CS       G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            Q+H      G   D+ V S+ I MY+  G +N AR++ D+  + +V+ W ++I GY++ 
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 213 GDIEGAKELFKSTKDKNTGSYN-------------------------------------- 234
                A  LFK     +   Y+                                      
Sbjct: 166 ERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAV 225

Query: 235 ------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                        ++  +A+ G    +RK+F+ M + D  +W+++I  Y ++G   EA  
Sbjct: 226 KKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFS 285

Query: 283 VFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           +F++M +R +++     LS VL ACA  GAL  G  IHD V +  +  + V+GT++VDMY
Sbjct: 286 LFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMY 345

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            KCGR++MA K F+ +K K V +W  M+ G  MHG   +A+++F++M R  ++P+ ITF 
Sbjct: 346 CKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFV 405

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL+AC+HAG++  G      M+  + ++P +EHY C+VDLLGRAGYL EA  +I  M +
Sbjct: 406 SVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKV 465

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +P+  VW +LLGACR H  VE GE   + L +++P N               R DDV +M
Sbjct: 466 KPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERM 525

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R LMK  G+   PG S+++  G +H F  GD  HPQ ++IY  L ++  KL+  GY PN 
Sbjct: 526 RILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNV 585

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           + VL+D+D EEK    + HSEKLA+AFG +N+ PG+ I++IKNLR+C DCH A KLISK+
Sbjct: 586 TSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKI 645

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R+I++RD  R+HHF++G CSC D+W
Sbjct: 646 VNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 122/248 (49%), Gaps = 26/248 (10%)

Query: 250 RKLFNEMNDKDEI-TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           R +F +  DK  + +W++II  + + G   +AL  F+ M++  + P +    C + +C+S
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L  L  G  IH          D  + +AL+DMY+KCG L+ A K+F+++  + V +W +M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 369 IGGLAMHGRADDAIELF--FKMQREK---------MRPDRITFACVLSACAHAGMIDRGL 417
           I G   + RA +A+ LF  F +  E          +  D +   CV+SACA        +
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-----CV 213

Query: 418 QALTYMQQMYGIDPEVEHYGC------IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           +++T  + ++G+  +    GC      ++D   + G ++ + +V   M  E +   W +L
Sbjct: 214 KSVT--ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSL 270

Query: 472 LGACRKHG 479
           +    ++G
Sbjct: 271 IAVYAQNG 278


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/629 (37%), Positives = 365/629 (58%), Gaps = 57/629 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           TS+  L+Q H+ +++ G       +  L+   A    S+F  A ++      P+  ++N 
Sbjct: 16  TSFALLRQHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPDPHPALFNP 75

Query: 104 VLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +  A      P R    L + M+ +  +P+ FT+P +  +           Q+HA ++K 
Sbjct: 76  LFSAL-----PTRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLV---AQLHALLLKL 127

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAKEL 221
           G        ++ +  Y      + A ++   G  + DV+ W  ++ G LK          
Sbjct: 128 GFHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLK---------- 177

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                 G F++AR LF+ M +++ ++W+A++ GY K   + +AL
Sbjct: 178 ---------------------LGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDAL 216

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           EVF+EM+   +    FV +  + AC   GAL +G  +H  V+++ I +D  L TA+VDMY
Sbjct: 217 EVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMY 276

Query: 342 AKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            KCG ++ AW+VFE + +  K + TWN MIGG A+HGR +DA++LF +M+RE + PD +T
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVT 336

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              VL+ACAHAGM+  G     Y+ Q YGI+P++EHYGC+VDL GRAG L EA++VI  M
Sbjct: 337 LVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           PMEP+  V  AL GA + HG+V+ GE +G  ++E++PQN               R +DVA
Sbjct: 397 PMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVA 456

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R+LM ER +    G S+I+V G + EF+ G   HP+ +E+Y M + ++ +++ EGY P
Sbjct: 457 RVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVP 516

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++  VL  I EEEKET   YHSEKLAIAFG ++T PG T+R+ KNLRVC DCH ATK +S
Sbjct: 517 DTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVS 576

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +VF+R I+VRDR R+HHF++G+CSC D+W
Sbjct: 577 RVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/613 (37%), Positives = 336/613 (54%), Gaps = 37/613 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVL------------RACLEHNEPWRVISLYSEMVG 126
           R  + + A  VF+ +   N   WN +L            R   E    W +IS    M G
Sbjct: 138 RSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGG 197

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG-----------DVHVKSSGI 175
              +        +F    + +       +  +     L             DV   ++ +
Sbjct: 198 YVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMV 257

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
             Y   G +++AR++ D+  +   + +N +I GY +   ++  +ELF+     N GS+N 
Sbjct: 258 YAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNI 317

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           MISG+ + G   +AR LF+ M  +D ++W+AII GY ++G Y+EA+ +  EM+RD     
Sbjct: 318 MISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLN 377

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +    C L+ACA + AL+ G  +H  V R       ++G ALV MY KCG +D A+ VF+
Sbjct: 378 RSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQ 437

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++ K++ +WN M+ G A HG    A+ +F  M    ++PD IT   VLSAC+H G+ DR
Sbjct: 438 GVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDR 497

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G +    M + YGI P  +HY C++DLLGRAG L EA+ +I +MP EP+AA W ALLGA 
Sbjct: 498 GTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGAS 557

Query: 476 RKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPG 521
           R HG +E GE+  +++ +MEP N               R  DV+KMR  M++ G++  PG
Sbjct: 558 RIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPG 617

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S ++V   IH F  GD  HP+   IY  L+++  K+K EGY  ++  VL D++EEEK+ 
Sbjct: 618 YSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKH 677

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
             KYHSEKLA+AFG +    G  IRV+KNLRVCEDCH+A K ISK+  R IIVRD  RYH
Sbjct: 678 MLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYH 737

Query: 642 HFRNGKCSCNDFW 654
           HF  G CSC D+W
Sbjct: 738 HFSEGICSCRDYW 750



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 215/496 (43%), Gaps = 47/496 (9%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQ-HLKQAH---------AVILKSGHFQDHYVSGTL 71
           TN P   F      D    KC  +   H++  H         A+ L++    +  +SG L
Sbjct: 21  TNYPKPHFE-----DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYL 75

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
                  R + F LA  +F+ +   ++F WN +L     +        L+  M   D   
Sbjct: 76  -------RNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVS 128

Query: 132 NKFTYPTVFKACSITEA-DKEGVQVHAHVVK-NGLCGDVHVKSSGIQMYACFGCVNKARQ 189
                    ++  + EA D      H + +  NGL          +  Y   G + +AR+
Sbjct: 129 WNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGL----------LAAYVRSGRLEEARR 178

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           + +  S  ++I  N L+ GY+K   +  A++LF     ++  S+N MISG+A+ G   +A
Sbjct: 179 LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA 238

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF E   +D  TW+A++  Y +DG   EA  VF+EM     + R+   + ++A  A  
Sbjct: 239 RRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP----QKREMSYNVMIAGYAQY 294

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             +D G  + + +   +I    +    ++  Y + G L  A  +F+ M  ++  +W A+I
Sbjct: 295 KRMDMGRELFEEMPFPNIGSWNI----MISGYCQNGDLAQARNLFDMMPQRDSVSWAAII 350

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G A +G  ++A+ +  +M+R+    +R TF C LSACA    ++ G Q    + +  G 
Sbjct: 351 AGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT-GY 409

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +        +V +  + G + EA +V   +    +   W  +L    +HG   FG +   
Sbjct: 410 EKGCLVGNALVGMYCKCGCIDEAYDVFQGV-QHKDIVSWNTMLAGYARHG---FGRQALT 465

Query: 490 ILLEMEPQNRRCDDVA 505
           +   M     + D++ 
Sbjct: 466 VFESMITAGVKPDEIT 481



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/348 (18%), Positives = 125/348 (35%), Gaps = 98/348 (28%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-------- 129
           +++   ++  ++F  +  PN+  WN ++    ++ +  +  +L+  M   DS        
Sbjct: 292 AQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIA 351

Query: 130 -----------------------KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
                                    N+ T+     AC+   A + G QVH  VV+ G   
Sbjct: 352 GYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEK 411

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
              V ++ + MY   GC+++A  +       D++ WN ++ GY + G    A  +F+S  
Sbjct: 412 GCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFES-- 469

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                    MI+   +                 DEIT   ++   +  G      E F+ 
Sbjct: 470 ---------MITAGVK----------------PDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 287 MQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M +D  I P     +C                                   ++D+  + G
Sbjct: 505 MNKDYGITPNSKHYAC-----------------------------------MIDLLGRAG 529

Query: 346 RLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQ 389
            L+ A  +  +M  + +  TW A++G   +HG     + A E+ FKM+
Sbjct: 530 CLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKME 577


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/590 (38%), Positives = 336/590 (56%), Gaps = 21/590 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + E A  VF  +       WN++L     + +    +    E+     +P+  +Y  
Sbjct: 85  RACDLESARNVFEKMSVRTTVTWNTMLSG---YTKVAGKVKEAHELFDKIPEPDSVSY-N 140

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +   C +      GV+            D+   ++ I  +A  G + KA  +     + +
Sbjct: 141 IMLVCYLRSY---GVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKN 197

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + W+A+I GY++ GD+E A+EL+K+   K+     AM++G+ +FG+ E A ++F  M  
Sbjct: 198 GVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAV 257

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K+ +TW+++I GY ++   ++ L+VF  M   +++P    LS VL  C++L AL  G  +
Sbjct: 258 KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQM 317

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  V ++ +  D    T+L+ MY KCG LD AWK+F +M  K+V +WNAMI G A HG  
Sbjct: 318 HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAG 377

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
             A+ LF KM+   M+PD ITF  V+ AC HAG +D G+Q    M++ +GI+ +  HY C
Sbjct: 378 RKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTC 437

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGRAG L EA  +I  MP +P+AA++  LLGACR H  ++  E   + LL ++P +
Sbjct: 438 VIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTS 497

Query: 499 --------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + D VAK+RK+MKE  +   PG S I++  V HEFR+ D  HP++
Sbjct: 498 ATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPEL 557

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
             I+  L ++  K+K+ GY P+    L D++EE KE    +HSEKLAIAFG + T PG  
Sbjct: 558 TSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTP 617

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV KNLRVC DCH A K IS + KR+IIVRD  R+HHFRNG CSC D+W
Sbjct: 618 IRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 155/322 (48%), Gaps = 52/322 (16%)

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF-GRFEEARKL- 252
           + SDV+  N  I  +++  D+E A+ +F+    + T ++N M+SG+ +  G+ +EA +L 
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 253 ------------------------------FNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                                         FN+M  KD  +W+ +I G+ ++G  ++A +
Sbjct: 129 DKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFD 188

Query: 283 VFNEMQRDKIKPRK--FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +F+ M      P K     S +++     G L+    ++ +V   S+ V+    TA++  
Sbjct: 189 LFSVM------PEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TAMLTG 238

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y K G++++A ++F+ M +K + TWN+MI G   + RA+D +++F  M   ++RP+ ++ 
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDP---EVEHYGCIVDLLGRAGYLAEAEEVIS 457
           + VL  C++   +  G Q    M Q+    P   +      ++ +  + G L  A ++  
Sbjct: 299 SSVLLGCSNLSALPLGRQ----MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFL 354

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
            MP + +   W A++    +HG
Sbjct: 355 EMPRK-DVISWNAMISGYAQHG 375


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/629 (38%), Positives = 363/629 (57%), Gaps = 57/629 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           TS+  L+Q H+ +++ G       +  L+   A    S+F  A ++      P+  ++N 
Sbjct: 16  TSFAVLRQHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPDPHPALFNP 75

Query: 104 VLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +  A      P R    L + M+ +  +P+ FT+P +  +           Q+HA ++K 
Sbjct: 76  LFSAL-----PTRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLV---AQLHALLLKL 127

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAKEL 221
           G        ++ +  Y      + A ++   G  + DV+ W  ++ G LK          
Sbjct: 128 GFHAHTQSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLK---------- 177

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                 G F++AR LF+ M +++ ++W+A++ GY K   + +AL
Sbjct: 178 ---------------------LGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDAL 216

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           EVF+EM+   +    FV +  + AC   GAL +G  +H  V+++ I +D  L TA+VDMY
Sbjct: 217 EVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMY 276

Query: 342 AKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            KCG ++ AW+VFE + +  K + TWN MIGG A+HGR  DA++LF +M+RE + PD +T
Sbjct: 277 CKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVT 336

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              VL+ACAHAGM+  G     Y+ Q YGI+P++EHYGC+VDL GRAG L EA++VI  M
Sbjct: 337 LVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDM 396

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           PMEP+  V  AL GA + HG+V+ GE +G  ++E++PQN               R +DVA
Sbjct: 397 PMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVA 456

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R+LM ER +    G S+I+V G + EF+ G   HP+ +E+Y M   ++ K++ EGY P
Sbjct: 457 RVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVP 516

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++  VL  I EEEKET   YHSEKLAIAFG ++T PG T+R+ KNLRVC DCH ATK +S
Sbjct: 517 DTRDVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVS 576

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +VF+R I+VRDR R+HHF++G+CSC D+W
Sbjct: 577 RVFERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/628 (39%), Positives = 346/628 (55%), Gaps = 89/628 (14%)

Query: 49  LKQAHAVILKSGHFQDHYVSGT--LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           L+Q HA IL        +      +V   A S F N   A  VF  +  PN+F WNS+++
Sbjct: 4   LRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIK 63

Query: 107 ACLE-HNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
              + H      I L+ ++       PN FT   V KAC+I  A  EG+QVH+HV     
Sbjct: 64  GYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHV----- 118

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                                     L DG  S +    +L++ Y KC +I         
Sbjct: 119 --------------------------LKDGFGSSLFVQTSLVNFYGKCEEI--------- 143

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                         GFAR        K+F EM  ++ + W+A+I G+ + G   EA+E+F
Sbjct: 144 --------------GFAR--------KVFEEMPVRNLVAWTAMISGHARVGAVDEAMELF 181

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            EMQ+  I+P    L  V++ACA  GALD G W+H ++++  +  D  L TALVDMYAKC
Sbjct: 182 REMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKC 241

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G ++ A +VF  M +K+   W++MI G A HG A DAI+ F +M   ++ PD +TF  VL
Sbjct: 242 GCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVL 301

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SACAH G++ RG +  + M + +GI+P VEHYGC VDLL R+G + EA  + ++M + PN
Sbjct: 302 SACAHGGLVSRGRRFWSLMLE-FGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPN 360

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           AA W +LL  C+K   +  GE + + LLE+EP N               + + ++++RK+
Sbjct: 361 AATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKV 420

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME----GYSPN 566
           MKE+ IK  PG S I+V+GV+HEF  GD SHP+VK    ML++ +E++ M     GY P+
Sbjct: 421 MKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVK----MLREFMEEMSMRVRDSGYRPS 476

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
            S VL  + +EEKE A   HSE+ AIA+G + T     IRV+KNLRVC DCH   K+ISK
Sbjct: 477 ISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISK 536

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +++R+IIVRDRVR+H F  G CSC DFW
Sbjct: 537 LYEREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/559 (40%), Positives = 327/559 (58%), Gaps = 50/559 (8%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG----VQVHA 157
           N+++RA      P   + LY+ ++     P   T P++ K+ +++ A        + VHA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           H VK GL G + V ++ I+++A                            G L  G +  
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHA----------------------------GIL--GRLSD 264

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A  L ++    +  ++N +I+ +AR GR  +AR LF+EM  ++ ++WSA+++GY + G  
Sbjct: 265 ALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EAL +F  MQ D ++P   VL  VLAACA LG L+QG W+H ++K N+I +   LGTAL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMYAKCG + +A +VF+ MK K V  W  MI GLAMHGR  +A+ELF +M+R  ++PD 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           I F   L AC H G++D+G +    M + YGI P++EHYGC+VDLL R G L EA E++ 
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
            MPM+P+A +W AL+  CR H  VE  E + K  +E+EP                 R   
Sbjct: 505 KMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM-EG 562
             ++R LM+E+G+   PG S +++ GVIH+F  GD SHP ++EI     +I  ++++ EG
Sbjct: 565 AREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEG 624

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+  +VL DI+EEEKE A   HSEK+AIAF  INT     IR++KNLRVC DCH  TK
Sbjct: 625 YVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTK 684

Query: 623 LISKVFKRDII-VRDRVRY 640
           LISKVF   ++   D V+Y
Sbjct: 685 LISKVFDLTVVKPSDFVQY 703



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 136/320 (42%), Gaps = 21/320 (6%)

Query: 55  VILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           V+L++    D     TL+  +A  R      A  +F+ +   N   W++++   ++  + 
Sbjct: 267 VLLRTAASVDASTFNTLITAYA--RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
              + L++ M     +P+      V  AC+     ++G  VH ++  N +   V + ++ 
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNT 230
           + MYA  G +  A ++     + +V+ W  +I G    G    A ELF   +      + 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFN 285
            ++   +      G  ++ R+LF+ M  K  I      +  ++D   ++G   EA E+  
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYA 342
           +M    +KP   +   ++A C       + + + ++V ++ I ++     A V   ++YA
Sbjct: 505 KM---PMKPDALIWGALMAGC----RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYA 557

Query: 343 KCGRLDMAWKVFEDMKMKEV 362
             GR   A ++   M+ K V
Sbjct: 558 ASGRHASAREIRHLMREKGV 577


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 348/625 (55%), Gaps = 60/625 (9%)

Query: 51  QAHAVILKSGHFQ-DHYVSGTLVKCHA------NSRFSNFELALKVFNSVHKPNVFVWNS 103
           + H +  K G F  D ++   L+  +A      ++RF        +F+ +   +V  WN 
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARF--------LFDKMSHRDVVTWNI 187

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    ++     V+ LY EM    ++P+     TV  AC+       G  +H  +  NG
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                H+++S + MYA                                CG +  A+E++ 
Sbjct: 248 FRVGSHIQTSLVNMYA-------------------------------NCGAMHLAREVYD 276

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
               K+     AM+SG+A+ G  ++AR +F+ M +KD + WSA+I GY +     EAL++
Sbjct: 277 QLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQL 336

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           FNEMQR +I P +  +  V++ACA++GAL Q  WIH +  +N       +  AL+DMYAK
Sbjct: 337 FNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAK 396

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG L  A +VFE+M  K V +W++MI   AMHG AD AI LF +M+ + + P+ +TF  V
Sbjct: 397 CGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGV 456

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L AC+HAG+++ G +  + M   + I P+ EHYGC+VDL  RA +L +A E+I +MP  P
Sbjct: 457 LYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPP 516

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRK 509
           N  +W +L+ AC+ HGE+E GE     LLE+EP              + +R DDV  +RK
Sbjct: 517 NVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRK 576

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LMK +G+      S I+VN  +H F   D  H Q  EIY  L  ++ +LK+ GY+P++S 
Sbjct: 577 LMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSG 636

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           +L D++EEEK+    +HSEKLA+ +G I     + IR++KNLR+CEDCHS  KL+SKV +
Sbjct: 637 ILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHR 696

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
            +I++RDR R+HHF  G CSC D+W
Sbjct: 697 IEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 325/559 (58%), Gaps = 50/559 (8%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG----VQVHA 157
           N+++RA      P   + LY+ ++     P   T P++ K+ +++ A        + VHA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           H VK GL G + V ++ I+++A                                 G +  
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGI------------------------------LGRLSD 264

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A  L ++    +  ++N +I+ +AR GR  +AR LF+EM  ++ ++WSA+++GY + G  
Sbjct: 265 ALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EAL +F  MQ D ++P   VL  VLAACA LG L+QG W+H ++K N+I +   LGTAL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMYAKCG + +A +VF+ MK K V  W  MI GLAMHGR  +A+ELF +M+R  ++PD 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           I F   L AC H G++D+G +    M + YGI P++EHYGC+VDLL R G L EA E++ 
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
            MPM+P+A +W AL+  CR H  VE  E + K  +E+EP                 R   
Sbjct: 505 KMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM-EG 562
             ++R LM+E+G+   PG S +++ GVIH+F  GD SHP ++EI     +I  ++++ EG
Sbjct: 565 AREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEG 624

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+  +VL DI+EEEKE A   HSEK+AIAF  INT     IR++KNLRVC DCH  TK
Sbjct: 625 YVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTK 684

Query: 623 LISKVFKRDII-VRDRVRY 640
           LISKVF   ++   D V+Y
Sbjct: 685 LISKVFDLTVVKPSDFVQY 703



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 136/320 (42%), Gaps = 21/320 (6%)

Query: 55  VILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           V+L++    D     TL+  +A  R      A  +F+ +   N   W++++   ++  + 
Sbjct: 267 VLLRTAASVDASTFNTLITAYA--RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
              + L++ M     +P+      V  AC+     ++G  VH ++  N +   V + ++ 
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNT 230
           + MYA  G +  A ++     + +V+ W  +I G    G    A ELF   +      + 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFN 285
            ++   +      G  ++ R+LF+ M  K  I      +  ++D   ++G   EA E+  
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYA 342
           +M    +KP   +   ++A C       + + + ++V ++ I ++     A V   ++YA
Sbjct: 505 KM---PMKPDALIWGALMAGC----RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYA 557

Query: 343 KCGRLDMAWKVFEDMKMKEV 362
             GR   A ++   M+ K V
Sbjct: 558 ASGRHASAREIRHLMREKGV 577


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 365/622 (58%), Gaps = 17/622 (2%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L Q H   +KSG   D Y  G L+   A S       A ++     +P+ F++N+++R  
Sbjct: 188 LTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGY 247

Query: 109 LEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            E +EP   ++++ EM+      P+ F++  V KA +   + + G Q+H   +K+GL   
Sbjct: 248 SESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSH 307

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           + V ++ I MY   GCV  AR++ D+  + +++ WNA++    +  D+ GA+E+F     
Sbjct: 308 LFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLV 367

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           +N  S+N M++G+ + G  E A+++F+EM  +D+++WS +I G++ +G + E+   F E+
Sbjct: 368 RNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
            R +++P +  L+ VL+AC+  GA + G  +H  V+++       +  AL+DMY++CG +
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487

Query: 348 DMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
            MA  VFE M+ K  + +W +MI GLAMHG  ++AI +F +M    + PD I+F  +L A
Sbjct: 488 PMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG+I  G    + M+++Y I+P VEHYGC+VDL GR+G L +A   I  MP+ P A 
Sbjct: 548 CSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAI 607

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
           VW  LLGAC  HG +E  E++ + L E++P N               +  DVA +RK M 
Sbjct: 608 VWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMI 667

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVL 571
            + IK     S+++V   +++F   +       E +  LK+II +L+ E GY+P  +  L
Sbjct: 668 VQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASAL 727

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           +D++EEEKE     HSEKLA+AF       GA IR++KNLR+C DCH+  KL S+V+  +
Sbjct: 728 YDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVE 787

Query: 632 IIVRDRVRYHHFRNGKCSCNDF 653
           I++RDR R+H F++G CSC D+
Sbjct: 788 IVIRDRNRFHSFKDGSCSCGDY 809


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/627 (36%), Positives = 349/627 (55%), Gaps = 23/627 (3%)

Query: 49  LKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           L + H+ I+ + H + D  ++  L++  A S      +A  +F+   + NV  +N ++R+
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            + +N     +S++  M+     P+ +T+P V KACS  +  + G+QVH  +VK GL  +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS--- 224
           + + ++ + MY   GC+ +AR++LD     DV+ WN+++ GY + G  + A E+ K    
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 225 ---TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                D  T +  + +  +      +    +F  M  K+ I+W+ +I  Y  +    EA+
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F +M+   +KP    ++ +L AC  L AL  G  +H ++++ ++  + +L  AL+DMY
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMY 351

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG L+ A  VF+ M++++V +W +M+      G+  DA+ LF KM      PD I F 
Sbjct: 352 AKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFV 411

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSAC+H G++D+G      M + YGI P +EH+ C+VDL GRAG + EA   I  MPM
Sbjct: 412 SVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPM 471

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
           EPN  VW ALL ACR H +++ G     +L ++ P+                   DV  +
Sbjct: 472 EPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNV 531

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R  MK+ GIK  PG S +++NG +H F  GD  HPQ K IY  L  ++ K+K  GY P +
Sbjct: 532 RYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQT 591

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L D++ E+KE     HSEKLAI F  +NT  G  IR+ KNLRVC DCH A KLISK+
Sbjct: 592 ESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKI 651

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R+IIVRD  R+HHF NG CSC D+W
Sbjct: 652 VSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/627 (36%), Positives = 349/627 (55%), Gaps = 23/627 (3%)

Query: 49  LKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           L + H+ I+ + H + D  ++  L++  A S      +A  +F+   + NV  +N ++R+
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            + +N     +S++  M+     P+ +T+P V KACS  +  + G+QVH  +VK GL  +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS--- 224
           + + ++ + MY   GC+ +AR++LD     DV+ WN+++ GY + G  + A E+ K    
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 225 ---TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                D  T +  + +  +      +    +F  M  K+ I+W+ +I  Y  +    EA+
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F +M+   +KP    ++ +L AC  L AL  G  +H ++++ ++  + +L  AL+DMY
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMY 351

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG L+ A  VF+ M++++V +W +M+      G+  DA+ LF KM      PD I F 
Sbjct: 352 AKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFV 411

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSAC+H G++D+G      M + YGI P +EH+ C+VDL GRAG + EA   I  MPM
Sbjct: 412 SVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPM 471

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
           EPN  VW ALL ACR H +++ G     +L ++ P+                   DV  +
Sbjct: 472 EPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNV 531

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R  MK+ GIK  PG S +++NG +H F  GD  HPQ K IY  L  ++ K+K  GY P +
Sbjct: 532 RYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQT 591

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L D++ E+KE     HSEKLAI F  +NT  G  IR+ KNLRVC DCH A KLISK+
Sbjct: 592 ESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKI 651

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R+IIVRD  R+HHF NG CSC D+W
Sbjct: 652 VSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 364/659 (55%), Gaps = 57/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H +I K G    + V  +L+  +   R      A K+F+ +   +V  WNS++   +
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGR--KVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           ++    R I ++ +M+      +  T   VF AC+       G  +H++ +K   L  +V
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREV 388

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
              ++ + MY+  G +N A ++ +   +  V+ W ++I GY++ G  +GA +LF   K +
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSR 448

Query: 229 ---------------------------------------NTGSYNAMISGFARFGRFEEA 249
                                                  N+   NA+   +A+ G  ++A
Sbjct: 449 GVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F+ M  KD I+W+ +I GYTK+    EAL +F EMQR+  KP    ++C+L ACASL
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASL 567

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            ALD+G  IH +  RN    D  +  A+VDMY KCG L +A  +F+ +  K++ +W  MI
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  MHG   +AI  F +M+   + PD ++F  +L AC+H+G++D G +    M++   I
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQI 687

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P +EHY C+VDLL R G L +A + I +MP++P+A +W ALL  CR H +V+  E++ +
Sbjct: 688 EPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAE 747

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + E+EP+N               + ++V K+RK + +RG+K NPG S I++ G I+ F 
Sbjct: 748 RIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFV 807

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            GD S PQ K+I L+LK++  K+K EGYSP ++  L + DE EKE A   HSEKLA+AFG
Sbjct: 808 AGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFG 867

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +N  PG TIRV KNLRVC DCH   K +SK   R+II+RD  R+HHF++G CSC  +W
Sbjct: 868 MLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 226/471 (47%), Gaps = 47/471 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++  ++I  SG   D  +   LV  +   +  + +    VF+ + +  +F+WN ++    
Sbjct: 170 RRVRSIIESSGVMIDGILGVKLVFMYV--KCGDLKEGRMVFDKLSESKIFLWNLMISEYS 227

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   I+L+ +M+ +  KPN +T+ ++ K  +     +EG QVH  + K G      
Sbjct: 228 GSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNT 287

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V +S I  Y     V  A+++ D+ +  DVI WN++I GY+K G  +   E+F       
Sbjct: 288 VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347

Query: 223 ---------------------------------KSTKDKNTGSYNAMISGFARFGRFEEA 249
                                             +T D+     N ++  +++ G    A
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSA 407

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            ++F  M++K  ++W+++I GY ++G    A+++F+EM+   + P  + ++ +L ACA  
Sbjct: 408 IRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAIN 467

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G L  G  +HD+++ N++  ++ +  AL DMYAKCG +  A  VF  MK K+V +WN MI
Sbjct: 468 GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMI 527

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYG 428
           GG   +   ++A+ LF +MQRE  +PD  T AC+L ACA    +D+G +   Y ++  Y 
Sbjct: 528 GGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYS 586

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            D  V +   +VD+  + G L  A  +   +P   +   W  ++     HG
Sbjct: 587 EDKYVTN--AVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHG 634



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 179/384 (46%), Gaps = 42/384 (10%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
            Y ++ + C+  ++ ++G +V + +  +G+  D  +    + MY   G + + R + D  
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEAR 250
           S+S +  WN +I  Y   G+   +  LFK   +     N+ ++++++  FA   R EE R
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 251 -----------------------------------KLFNEMNDKDEITWSAIIDGYTKDG 275
                                              KLF+E+ D+D I+W+++I GY K+G
Sbjct: 272 QVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNG 331

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLG 334
                +E+F +M    +      +  V  ACA++G L  G  +H + +K  ++  +    
Sbjct: 332 LDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFN 391

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             L+DMY+KCG L+ A +VFE M  K V +W +MI G    G +D AI+LF +M+   + 
Sbjct: 392 NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD      +L+ACA  G +  G     Y+++   ++        + D+  + G + +A +
Sbjct: 452 PDVYAVTSILNACAINGNLKSGKIVHDYIRE-NNLETNSFVSNALTDMYAKCGSMKDAHD 510

Query: 455 VISSMPMEPNAAVWEALLGACRKH 478
           V S M  + +   W  ++G   K+
Sbjct: 511 VFSHMK-KKDVISWNTMIGGYTKN 533



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
           E+  S  I  + + G  K A+E+    Q        +    +L  CA   ++  G  +  
Sbjct: 117 ELDSSRKIVEFCEVGDLKNAMELLCSSQNSNFDLGAYC--SILQLCAERKSIRDGRRVRS 174

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            ++ + + +D +LG  LV MY KCG L     VF+ +   ++F WN MI   +  G   +
Sbjct: 175 IIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGE 234

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           +I LF +M    ++P+  TF+ +L   A    ++ G Q
Sbjct: 235 SINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/658 (34%), Positives = 363/658 (55%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  ++ +    + +    +V  +A  R    + A K+F+ + + ++  WN+++    
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCR--QIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L   M     +P+  T  TV  A +       G  +H + ++ G    V+
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           + ++   MY+  G V  AR I D   +  V+ WN+++DGY++                  
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 212 -----------------CGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEAR 250
                             GD+E  K + K     N GS     N++IS +++  R + A 
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +FN +N +  ++W+A+I GY ++G   EAL  F+EM+   +KP  F +  V+ A A L 
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 WIH  + R+ +  +  + TALVDMY+KCG + MA K+F+ +  + V TWNAMI 
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    A++LF KM++  + P+ IT+  V+SAC+H+G++D GL+    M+Q YG++
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRAG + EA + I +MP+ P   V+ A  GAC+ H  +E GE+  K 
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKK 644

Query: 491 LLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L E+ P                 +   VA++RK M+++G+K  PG S++++   +H F +
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HPQ K IY  L++++ ++K  GY P+++ +L D++++ +E     HSEKLAIAFG 
Sbjct: 705 GSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGL 763

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG TI V KNLRVC DCH+ATK IS V  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 764 LNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 245/550 (44%), Gaps = 82/550 (14%)

Query: 10  LPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSG 69
           LP H   E     +IP+  +       +L   C TS + L Q   +++K+G + +H    
Sbjct: 32  LPFHTLSER---AHIPSHVYKHPAA--VLLELC-TSMKELHQIIPLVIKNGLYNEHLFQT 85

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            LV     S++ +   A +VF  +      +++++L+   +++     ++    M   D 
Sbjct: 86  KLVSLF--SKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP  + +  + K C      K G ++H  ++ N    +V   +  + MYA    ++ A +
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---------------------- 227
           + D   + D++ WN +I G+ + G  + A EL    +D                      
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 228 ----KNTGSYNAMISGFARF--------------GRFEEARKLFNEMNDKDEITWSAIID 269
               K+   Y A+ +GFA+               G  E AR +F+ M+ K  ++W++++D
Sbjct: 264 LMVGKSIHGY-AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           GY ++G  ++A+ VF +M  + I P    +   L ACA LG L++G ++H  V + ++  
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  +  +L+ MY+KC R+D+A  +F ++  +   +WNAMI G A +GR  +A+  F +M+
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 390 REKMRPDRITFACVLSACA------HA----GMI-----DRGLQALTYMQQMYG------ 428
              M+PD  T   V+ A A      HA    G+I     D+ +   T +  MY       
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 429 ---------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACR 476
                     D  V  +  ++D  G  G    A ++   M    +EPN   + +++ AC 
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 477 KHGEVEFGER 486
             G V+ G R
Sbjct: 563 HSGLVDEGLR 572


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 366/672 (54%), Gaps = 70/672 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  L+ G   + ++  TLV  +   +      +  +  S    ++  WN+VL +  
Sbjct: 222 KQVHAYGLRKGEL-NSFIINTLVAMYG--KLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           ++ +    +    EMV    +P++FT  +V  ACS  E  + G ++HA+ +KNG L  + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY-----------LKCGDIEG 217
            V S+ + MY     V   R++ D      +  WNA+I GY           L  G  E 
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 218 AKELFKSTK-----------------------------DKNTGSYNAMISGFARFGRFEE 248
           A  L  ST                              D++    N ++  ++R G+ + 
Sbjct: 399 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-----------RDKIKPRKF 297
           A ++F +M D+D +TW+ +I GY    ++++AL + ++MQ           R  +KP   
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  +L +CA+L AL +G  IH +  +N++  D  +G+ALVDMYAKCG L M+ KVF+ +
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K V TWN +I    MHG   +AI+L   M  + ++P+ +TF  V +AC+H+GM+D GL
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN-AAVWEALLGACR 476
           +    M+  YG++P  +HY C+VDLLGRAG + EA ++++ MP + N A  W +LLGA R
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 477 KHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKTNPGS 522
            H  +E GE   + L+++EP                   D   ++R+ MKE+G++  PG 
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 758

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+    +H+F  GD SHPQ +++   L+ + E+++ EGY P++S VL +++E+EKE  
Sbjct: 759 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 818

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +NT PG  IRV KNLRVC DCH ATK ISK+  R+II+RD  R+H 
Sbjct: 819 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 878

Query: 643 FRNGKCSCNDFW 654
           F+NG CSC D+W
Sbjct: 879 FKNGTCSCGDYW 890



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 220/486 (45%), Gaps = 61/486 (12%)

Query: 50  KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           KQ HA + K G+  D   V+ TLV  +   +  +F    KVF+ + + N   WNS++ + 
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISSL 174

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS---ITEADKEGVQVHAHVVKNGLC 165
               +    +  +  M+  + +P+ FT  +V  ACS   + E    G QVHA+ ++ G  
Sbjct: 175 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL 234

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------YLKCG 213
            +  + ++ + MY   G +  ++ +L      D++ WN ++              YL+  
Sbjct: 235 -NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 214 DIEGAK----------------ELFKSTK------------DKNTGSYNAMISGFARFGR 245
            +EG +                E+ ++ K            D+N+   +A++  +    +
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQ 353

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLA 304
               R++F+ M D+    W+A+I GY+++ + KEAL +F  M+    +      ++ V+ 
Sbjct: 354 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 413

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC   GA  +   IH  V +  +  D  +   L+DMY++ G++D+A ++F  M+ +++ T
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQ-----------REKMRPDRITFACVLSACAHAGMI 413
           WN MI G       +DA+ L  KMQ           R  ++P+ IT   +L +CA    +
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +G +   Y  +   +  +V     +VD+  + G L  + +V   +P + N   W  ++ 
Sbjct: 534 AKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 591

Query: 474 ACRKHG 479
           A   HG
Sbjct: 592 AYGMHG 597



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 74/390 (18%)

Query: 96  PNVFV--------WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           P++F+        W  +LR+ +  N     +  Y +M+ +  KP+ + +P + KA +  +
Sbjct: 52  PSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQ 111

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             + G Q+HAHV K G   D                               V   N L++
Sbjct: 112 DMELGKQIHAHVYKFGYGVD------------------------------SVTVANTLVN 141

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KCGD                               F    K+F+ ++++++++W+++
Sbjct: 142 LYRKCGD-------------------------------FGAVYKVFDRISERNQVSWNSL 170

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG---ALDQGIWIHDHVKR 324
           I        ++ ALE F  M  + ++P  F L  V+ AC++L     L  G  +H +  R
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                  ++ T LV MY K G+L  +  +      +++ TWN ++  L  + +  +A+E 
Sbjct: 231 KGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEY 289

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
             +M  E + PD  T + VL AC+H  M+  G +   Y  +   +D        +VD+  
Sbjct: 290 LREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYC 349

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
               +     V   M  +    +W A++  
Sbjct: 350 NCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W  ++    +    +EA+  + +M    IKP  +    +L A A L  ++ G  IH HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 324 RNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +    VD+V +   LV++Y KCG     +KVF+ +  +   +WN++I  L    + + A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHY--GCI 439
           E F  M  E + P   T   V++AC++  M + GL  +      YG+   E+  +    +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTL 242

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHGEVEFGERLGKILLE-MEP 496
           V + G+ G LA ++ ++ S     +   W  +L + C+    +E  E L +++LE +EP
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 366/672 (54%), Gaps = 70/672 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  L+ G   + ++  TLV  +   +      +  +  S    ++  WN+VL +  
Sbjct: 222 KQVHAYGLRKGEL-NSFIINTLVAMYG--KLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           ++ +    +    EMV    +P++FT  +V  ACS  E  + G ++HA+ +KNG L  + 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY-----------LKCGDIEG 217
            V S+ + MY     V   R++ D      +  WNA+I GY           L  G  E 
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 218 AKELFKSTK-----------------------------DKNTGSYNAMISGFARFGRFEE 248
           A  L  ST                              D++    N ++  ++R G+ + 
Sbjct: 399 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-----------RDKIKPRKF 297
           A ++F +M D+D +TW+ +I GY    ++++AL + ++MQ           R  +KP   
Sbjct: 459 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 518

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  +L +CA+L AL +G  IH +  +N++  D  +G+ALVDMYAKCG L M+ KVF+ +
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K V TWN +I    MHG   +AI+L   M  + ++P+ +TF  V +AC+H+GM+D GL
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN-AAVWEALLGACR 476
           +    M+  YG++P  +HY C+VDLLGRAG + EA ++++ MP + N A  W +LLGA R
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 477 KHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKTNPGS 522
            H  +E GE   + L+++EP                   D   ++R+ MKE+G++  PG 
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 758

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+    +H+F  GD SHPQ +++   L+ + E+++ EGY P++S VL +++E+EKE  
Sbjct: 759 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 818

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +NT PG  IRV KNLRVC DCH ATK ISK+  R+II+RD  R+H 
Sbjct: 819 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 878

Query: 643 FRNGKCSCNDFW 654
           F+NG CSC D+W
Sbjct: 879 FKNGTCSCGDYW 890



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 220/486 (45%), Gaps = 61/486 (12%)

Query: 50  KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           KQ HA + K G+  D   V+ TLV  +   +  +F    KVF+ + + N   WNS++ + 
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISSL 174

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS---ITEADKEGVQVHAHVVKNGLC 165
               +    +  +  M+  + +P+ FT  +V  ACS   + E    G QVHA+ ++ G  
Sbjct: 175 CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL 234

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------YLKCG 213
            +  + ++ + MY   G +  ++ +L      D++ WN ++              YL+  
Sbjct: 235 -NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 214 DIEGAK----------------ELFKSTK------------DKNTGSYNAMISGFARFGR 245
            +EG +                E+ ++ K            D+N+   +A++  +    +
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQ 353

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLA 304
               R++F+ M D+    W+A+I GY+++ + KEAL +F  M+    +      ++ V+ 
Sbjct: 354 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 413

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC   GA  +   IH  V +  +  D  +   L+DMY++ G++D+A ++F  M+ +++ T
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQ-----------REKMRPDRITFACVLSACAHAGMI 413
           WN MI G       +DA+ L  KMQ           R  ++P+ IT   +L +CA    +
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +G +   Y  +   +  +V     +VD+  + G L  + +V   +P + N   W  ++ 
Sbjct: 534 AKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 591

Query: 474 ACRKHG 479
           A   HG
Sbjct: 592 AYGMHG 597



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 74/390 (18%)

Query: 96  PNVFV--------WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           P++F+        W  +LR+ +  N     +  Y +M+ +  KP+ + +P + KA +  +
Sbjct: 52  PSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQ 111

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             + G Q+HAHV K G   D                               V   N L++
Sbjct: 112 DMELGKQIHAHVYKFGYGVD------------------------------SVTVANTLVN 141

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KCGD                               F    K+F+ ++++++++W+++
Sbjct: 142 LYRKCGD-------------------------------FGAVYKVFDRISERNQVSWNSL 170

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG---ALDQGIWIHDHVKR 324
           I        ++ ALE F  M  + ++P  F L  V+ AC++L     L  G  +H +  R
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                  ++ T LV MY K G+L  +  +      +++ TWN ++  L  + +  +A+E 
Sbjct: 231 KGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEY 289

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
             +M  E + PD  T + VL AC+H  M+  G +   Y  +   +D        +VD+  
Sbjct: 290 LREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYC 349

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
               +     V   M  +    +W A++  
Sbjct: 350 NCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W  ++    +    +EA+  + +M    IKP  +    +L A A L  ++ G  IH HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 324 RNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +    VD+V +   LV++Y KCG     +KVF+ +  +   +WN++I  L    + + A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHY--GCI 439
           E F  M  E + P   T   V++AC++  M + GL  +      YG+   E+  +    +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTL 242

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHGEVEFGERLGKILLE-MEP 496
           V + G+ G LA ++ ++ S     +   W  +L + C+    +E  E L +++LE +EP
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/690 (34%), Positives = 375/690 (54%), Gaps = 57/690 (8%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+  + I  +EFS  ++++       +S    K  H  ++K G+  D + +  LV  +A 
Sbjct: 248 EMVLSGIKPNEFSLSSMVNACTGLRDSSRG--KIIHGYLIKLGYDWDPFSANALVDMYA- 304

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            +  +   A+ VF  + +P++  WN+V+  C+ H    + + L  +M      PN FT  
Sbjct: 305 -KVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLS 363

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +  KAC+     + G Q+H+ ++K  +  D+ V    + MY+    +  AR   +   + 
Sbjct: 364 SALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 423

Query: 198 DVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY---------- 233
           D+I WNA+I GY +  +   A  LF               ST  K+T             
Sbjct: 424 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 483

Query: 234 ---------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                          N++I  + +    E+A ++F E    D ++++++I  Y + G  +
Sbjct: 484 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 543

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL++F EMQ  ++KP +FV S +L ACA+L A +QG  +H H+ +    +D   G +LV
Sbjct: 544 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 603

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MYAKCG +D A + F ++  + + +W+AMIGGLA HG    A++LF +M +E + P+ I
Sbjct: 604 NMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHI 663

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL AC HAG++         M++++G  P  EHY C++DLLGRAG + EA E+++ 
Sbjct: 664 TLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNK 723

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDV 504
           MP E NA+VW ALLGA R H +VE G R  ++L  +EP+                + ++V
Sbjct: 724 MPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENV 783

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           A++R+LM++  +K  PG S I+V   ++ F  GD SH + +EIY  L ++ + +   GY 
Sbjct: 784 AEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV 843

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P     L D+++ EKE    +HSEKLA+AFG I T  GA IRV KNLRVC DCH+A K I
Sbjct: 844 PMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYI 903

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 904 CKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 163/669 (24%), Positives = 286/669 (42%), Gaps = 125/669 (18%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           PTS    K +     TK   S +   Q HA I KSG   D  +   L+  ++  R  NF 
Sbjct: 54  PTSVSYSKLLSQCCTTK---SLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR--NFG 108

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A K+ +   +P++  W++++    ++      +  + EM  +  K N+FT+ +V KACS
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           I +  + G QVH  VV +G  GDV V ++ + MYA       ++++ D+  + +V+ WNA
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 205 LIDGYLK---CGD---------IEGAKE---------------------------LFKST 225
           L   Y++   CG+         + G K                            L K  
Sbjct: 229 LFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D +  S NA++  +A+ G   +A  +F ++   D ++W+A+I G     ++++ALE+  
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +M+R  I P  F LS  L ACA +G  + G  +H  + +  +  D  +   LVDMY+KC 
Sbjct: 349 QMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L+ A   F  +  K++  WNA+I G + +    +A+ LF +M +E +  ++ T + +L 
Sbjct: 409 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 468

Query: 406 ACAHAGMIDRGLQALTYMQQMYGID------PEVEHYGCIVDLLGRAGYLAEAEEV---- 455
           + A       GLQ +   +Q++G+        ++     ++D  G+  ++ +AE +    
Sbjct: 469 STA-------GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 521

Query: 456 ------------------------------ISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
                                         +  M ++P+  V  +LL AC      E G+
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581

Query: 486 RL---------------GKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           +L               G  L+ M  +    DD  +    + ERGI +   S+MI     
Sbjct: 582 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVS--WSAMIG---- 635

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS---SQVLFDIDEEEKETAPKYHS 587
                 G   H   ++   +  ++++    EG SPN      VL   +     T  K + 
Sbjct: 636 ------GLAQHGHGRQALQLFNQMLK----EGVSPNHITLVSVLGACNHAGLVTEAKLYF 685

Query: 588 EKLAIAFGF 596
           E +   FGF
Sbjct: 686 ESMEELFGF 694



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           + N + +    P     S +L+ C +  +L  G+ IH H+ ++ +  D  +   L+++Y+
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KC     A K+ ++    ++ +W+A+I G A +G    A+  F +M    ++ +  TF+ 
Sbjct: 103 KCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL AC+    +  G Q    +  + G + +V     +V +  +     +++ +   +P E
Sbjct: 163 VLKACSIVKDLRIGKQVHGVV-VVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-E 220

Query: 463 PNAAVWEALLGACRKHGEVEF-GERLG 488
            N   W AL      + +++F GE +G
Sbjct: 221 RNVVSWNALFSC---YVQIDFCGEAVG 244


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 343/581 (59%), Gaps = 45/581 (7%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           ++F+     N+ ++N+++   ++H     V+ +  EM+    +P+K T  +   AC+   
Sbjct: 279 EIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLG 338

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G   HA+V +NGL                        + LD+ S       NA+ID
Sbjct: 339 DLSVGKSSHAYVFRNGL------------------------ERLDNIS-------NAIID 367

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y+KCG  E A ++F S  +K   ++N++I+G  R G  E A ++F EM + + ++W+ +
Sbjct: 368 MYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTM 427

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I    +   ++EA+++  EMQ   IK  +  +  + +AC  LGALD   WI+ ++++N I
Sbjct: 428 IGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDI 487

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
            +D  LGTALVDM+++CG    A +VFE+M+ ++V  W A I   A+ G A  AIELF +
Sbjct: 488 HIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M ++ ++ D   F  +L+A +H G +D+G Q    M++++G+ P++ HYGC+VDLLGRAG
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------- 498
            L EA +++ SMP++PN  +W + L ACRKH  VEF     + + ++ P+          
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSN 667

Query: 499 -----RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 + +DVA++R  MKE+G +   GSS I+V+G+I EF +GD SH +  +I LML++
Sbjct: 668 IYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQE 727

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           I  ++   GY P+++ VL D+DE+EKE     HSEKLA+A+G INT  G  IRV+KNLR+
Sbjct: 728 INCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRM 787

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCHS  KL+SK++ R+I VRD  RYH F+ G CSC DFW
Sbjct: 788 CSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/573 (27%), Positives = 246/573 (42%), Gaps = 94/573 (16%)

Query: 6   TTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH 65
           TTT L     P  +  T       S +T        C T  + LKQ H  +LK G F   
Sbjct: 4   TTTTLHQSSSPLLLPTTTQKPKNSSLQT--------CKTLIE-LKQLHCNMLKKGVFN-- 52

Query: 66  YVSGTLVKCHANSRFSNFELALKVF--NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
            ++  +  C       +   AL  F  +   K +++  N+++R           I +Y  
Sbjct: 53  -INKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLH 111

Query: 124 MVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
           M+ V    P+ FT+P +  ACS   A  EGVQVH  VVK GL  D+ V +S I  YA  G
Sbjct: 112 MIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG 171

Query: 183 CVNKARQILDDGSKSDVICWNALIDGY--------------------------------- 209
            V+  R++ D+  + +V+ W +LI+GY                                 
Sbjct: 172 KVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAIS 231

Query: 210 --LKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
              K  D+E  K++     +     NT   NA++  + + G     R++F+E +DK+ + 
Sbjct: 232 ACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVM 291

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++ I+  Y + G   E L V +EM +   +P K  +   +AACA LG L  G   H +V 
Sbjct: 292 YNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVF 351

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA----- 378
           RN +     +  A++DMY KCG+ + A KVF+ M  K V TWN++I GL   G       
Sbjct: 352 RNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALR 411

Query: 379 --------------------------DDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
                                     ++AI+L  +MQ + ++ DR+T   + SAC + G 
Sbjct: 412 IFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGA 471

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D      TY+++   I  +++    +VD+  R G    A  V  +M  + + + W A +
Sbjct: 472 LDLAKWIYTYIEK-NDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSAWTAAI 529

Query: 473 GACRKHGEVEFGERLGKILL--EMEPQNRRCDD 503
                 G  +     G I L  EM  Q+ + DD
Sbjct: 530 RVKAVEGNAK-----GAIELFDEMLKQDVKADD 557



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 11/305 (3%)

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI-----TWSA 266
           C  +   K+L  +   K   + N +I+   + G  E      N   + +       T + 
Sbjct: 32  CKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNT 91

Query: 267 IIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           +I GY   G  KEA+ ++  M     I P  F    +L+AC+ + A  +G+ +H  V + 
Sbjct: 92  LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  D  +  +L+  YA CG++D+  KVF++M  + V +W ++I G ++   A +A+ LF
Sbjct: 152 GLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLF 211

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           F+M    + P+ +T  C +SACA    ++ G +    M ++ G+         ++D+  +
Sbjct: 212 FEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTEL-GVKSNTLVVNALLDMYMK 270

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
            G +    E+      + N  ++  ++    +HG    GE L  +L EM  + +R D V 
Sbjct: 271 CGDMYAVREIFDEFS-DKNLVMYNTIMSNYVQHGLA--GEVL-VVLDEMLQKGQRPDKVT 326

Query: 506 KMRKL 510
            +  +
Sbjct: 327 MLSTI 331


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/677 (35%), Positives = 364/677 (53%), Gaps = 57/677 (8%)

Query: 33   TILDILNTKCHTSWQHL---KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
            T L ILN     S   L   K  H    ++G   D  +   L+  H  ++  + + A  V
Sbjct: 423  TYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALI--HMYAKCGSIDDARLV 480

Query: 90   FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
            F+ +   +V  WN+++    ++       +++ +M      P+  TY ++      T+A 
Sbjct: 481  FDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDAL 540

Query: 150  KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
            +   +VH H V+ GL  D  V S+ I MY   G ++ AR + D  S   V  WNA+I G 
Sbjct: 541  EWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGA 600

Query: 210  L--KCGD---------------------------------IEGAKELFKSTKDKNTGSY- 233
               +CG                                  +E  KE+     D       
Sbjct: 601  AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLR 660

Query: 234  --NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
              NA++  +++ G  + A+++F++M +++  TW+ +I G  + G   +A   F +M R+ 
Sbjct: 661  VGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG 720

Query: 292  IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            I P       +L+ACAS GAL+    +H+H     +  D  +G ALV MYAKCG +D A 
Sbjct: 721  IVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDAR 780

Query: 352  KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
             VF+DM  ++VF+W  MIGGLA HGR  +A++ F KM+ E  +P+  ++  VL+AC+HAG
Sbjct: 781  SVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAG 840

Query: 412  MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            ++D G +    M Q YGI+P +EHY C+VDLLGRAG L EAE  I +MP+EP+ A W AL
Sbjct: 841  LVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGAL 900

Query: 472  LGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIK 517
            LGAC  +G +E  E   K  L+++P++               + +    +R +M+ +GI+
Sbjct: 901  LGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIR 960

Query: 518  TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
              PG S I+V+  IH F  GD SHP+ KEIY  L  +IE+LK +GY P++  VL + D+E
Sbjct: 961  KEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQE 1020

Query: 578  EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
             KE A   HSEKLAI +G ++T     IRV KNLRVC DCH+ATK ISK+  R+I+ RD 
Sbjct: 1021 HKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDA 1080

Query: 638  VRYHHFRNGKCSCNDFW 654
             R+HHF++G CSC D+W
Sbjct: 1081 KRFHHFKDGVCSCGDYW 1097



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 238/498 (47%), Gaps = 64/498 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  I+KSG  Q+ YV+  L++ +   R    + A +VF+ + K N+++W +++    
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYI--RCGRLQCARQVFDKLLKKNIYIWTTMIGGYA 195

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E+      + +Y +M     +PN+ TY ++ KAC      K G ++HAH++++G   DV 
Sbjct: 196 EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVR 255

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V+++ + MY   G +  A+ I D   + +VI W  +I G    G  + A  LF   + + 
Sbjct: 256 VETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREG 315

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N+ +Y                                   NA++  +A+ G  ++AR
Sbjct: 316 FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDAR 375

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL--AACAS 308
            +F+ M ++D  +W+ +I G  + G  +EA  +F +MQR+   P       +L  +A AS
Sbjct: 376 VVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAS 435

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
             AL+    +H H +      D  +G AL+ MYAKCG +D A  VF+ M  ++V +WNAM
Sbjct: 436 TSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAM 495

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY- 427
           +GGLA +G   +A  +F +MQ+E + PD  T+  +L+     G  D    AL ++ +++ 
Sbjct: 496 MGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNT---HGSTD----ALEWVNEVHK 548

Query: 428 -----GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
                G+  +       + +  R G + +A  +   + +  +   W A++G   +     
Sbjct: 549 HAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQ----- 602

Query: 483 FGERLGKILLEMEPQNRR 500
             +R G+  L +  Q +R
Sbjct: 603 --QRCGREALSLFLQMQR 618



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 211/457 (46%), Gaps = 62/457 (13%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + F+Y  + + C   E      QVH  ++K+G+  +++V +  +++Y   G +  ARQ+ 
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSY-------------- 233
           D   K ++  W  +I GY + G  E A  ++   + +    N  +Y              
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 234 ---------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                 A+++ + + G  E+A+ +F++M +++ I+W+ +I G  
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
             G  +EA  +F +MQR+   P  +    +L A AS GAL+    +H H     + +D  
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +G ALV MYAK G +D A  VF+ M  +++F+W  MIGGLA HGR  +A  LF +MQR  
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGRA 446
             P+  T+  +L+A A A        AL +++ ++      G   ++     ++ +  + 
Sbjct: 417 CLPNLTTYLSILNASAIAST-----SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKC 471

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAK 506
           G + +A  V   M  + +   W A++G   ++G    G     + L+M+ +    D    
Sbjct: 472 GSIDDARLVFDGM-CDRDVISWNAMMGGLAQNG---CGHEAFTVFLQMQQEGLVPDSTTY 527

Query: 507 MRKLMKERGIKTNPGSSMIDVN------GVIHEFRTG 537
           +  L+   G  T+    + +V+      G+I +FR G
Sbjct: 528 L-SLLNTHG-STDALEWVNEVHKHAVETGLISDFRVG 562



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 164/315 (52%), Gaps = 21/315 (6%)

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKE----LFKSTKDKNTGSYNAMISGFARFGRF 246
           +  G   D   +  ++   LK  DI  AK+    + KS  ++N    N ++  + R GR 
Sbjct: 110 VQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRL 169

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           + AR++F+++  K+   W+ +I GY + G+ ++A+ V+++M+++  +P +     +L AC
Sbjct: 170 QCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKAC 229

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
                L  G  IH H+ ++    D  + TALV+MY KCG ++ A  +F+ M  + V +W 
Sbjct: 230 CCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWT 289

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            MIGGLA +GR  +A  LF +MQRE   P+  T+  +L+A A AG       AL +++++
Sbjct: 290 VMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG-------ALEWVKEV 342

Query: 427 Y------GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +      G+  ++     +V +  ++G + +A  V   M  E +   W  ++G   +HG 
Sbjct: 343 HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQHGR 401

Query: 481 VEFGERLGKILLEME 495
              G+    + L+M+
Sbjct: 402 ---GQEAFSLFLQMQ 413


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 366/672 (54%), Gaps = 70/672 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  L+ G   + ++  TLV  +   +      +  +  S    ++  WN+VL +  
Sbjct: 135 KQVHAYGLRKGEL-NSFIINTLVAMYG--KLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           ++ +    +    EMV    +P++FT  +V  ACS  E  + G ++HA+ +KNG L  + 
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY-----------LKCGDIEG 217
            V S+ + MY     V   R++ D      +  WNA+I GY           L  G  E 
Sbjct: 252 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 311

Query: 218 AKELFKSTK-----------------------------DKNTGSYNAMISGFARFGRFEE 248
           A  L  ST                              D++    N ++  ++R G+ + 
Sbjct: 312 AGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDI 371

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-----------RDKIKPRKF 297
           A ++F +M D+D +TW+ +I GY    ++++AL + ++MQ           R  +KP   
Sbjct: 372 AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSI 431

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  +L +CA+L AL +G  IH +  +N++  D  +G+ALVDMYAKCG L M+ KVF+ +
Sbjct: 432 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 491

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K V TWN +I    MHG   +AI+L   M  + ++P+ +TF  V +AC+H+GM+D GL
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 551

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN-AAVWEALLGACR 476
           +    M+  YG++P  +HY C+VDLLGRAG + EA ++++ MP + N A  W +LLGA R
Sbjct: 552 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 611

Query: 477 KHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKTNPGS 522
            H  +E GE   + L+++EP                   D   ++R+ MKE+G++  PG 
Sbjct: 612 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGC 671

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+    +H+F  GD SHPQ +++   L+ + E+++ EGY P++S VL +++E+EKE  
Sbjct: 672 SWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEIL 731

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +NT PG  IRV KNLRVC DCH ATK ISK+  R+II+RD  R+H 
Sbjct: 732 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHR 791

Query: 643 FRNGKCSCNDFW 654
           F+NG CSC D+W
Sbjct: 792 FKNGTCSCGDYW 803



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 220/486 (45%), Gaps = 61/486 (12%)

Query: 50  KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           KQ HA + K G+  D   V+ TLV  +   +  +F    KVF+ + + N   WNS++ + 
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISSL 87

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS---ITEADKEGVQVHAHVVKNGLC 165
               +    +  +  M+  + +P+ FT  +V  ACS   + E    G QVHA+ ++ G  
Sbjct: 88  CSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL 147

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------YLKCG 213
            +  + ++ + MY   G +  ++ +L      D++ WN ++              YL+  
Sbjct: 148 -NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 206

Query: 214 DIEGAK----------------ELFKSTK------------DKNTGSYNAMISGFARFGR 245
            +EG +                E+ ++ K            D+N+   +A++  +    +
Sbjct: 207 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQ 266

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLA 304
               R++F+ M D+    W+A+I GY+++ + KEAL +F  M+    +      ++ V+ 
Sbjct: 267 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 326

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC   GA  +   IH  V +  +  D  +   L+DMY++ G++D+A ++F  M+ +++ T
Sbjct: 327 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 386

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQ-----------REKMRPDRITFACVLSACAHAGMI 413
           WN MI G       +DA+ L  KMQ           R  ++P+ IT   +L +CA    +
Sbjct: 387 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 446

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +G +   Y  +   +  +V     +VD+  + G L  + +V   +P + N   W  ++ 
Sbjct: 447 AKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 504

Query: 474 ACRKHG 479
           A   HG
Sbjct: 505 AYGMHG 510



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 66/354 (18%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+ +  KP+ + +P + KA +  +  + G Q+HAHV K G   D                
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVD---------------- 44

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                          V   N L++ Y KCGD                             
Sbjct: 45  --------------SVTVANTLVNLYRKCGD----------------------------- 61

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
             F    K+F+ ++++++++W+++I        ++ ALE F  M  + ++P  F L  V+
Sbjct: 62  --FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 119

Query: 304 AACASLG---ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            AC++L     L  G  +H +  R       ++ T LV MY K G+L  +  +      +
Sbjct: 120 TACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGR 178

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           ++ TWN ++  L  + +  +A+E   +M  E + PD  T + VL AC+H  M+  G +  
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 238

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            Y  +   +D        +VD+      +     V   M  +    +W A++  
Sbjct: 239 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 291



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLDMA 350
           IKP  +    +L A A L  ++ G  IH HV +    VD+V +   LV++Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           +KVF+ +  +   +WN++I  L    + + A+E F  M  E + P   T   V++AC++ 
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 411 GMIDRGLQALTYMQQMYGI-DPEVEHY--GCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
            M + GL  +      YG+   E+  +    +V + G+ G LA ++ ++ S     +   
Sbjct: 126 PMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR-DLVT 182

Query: 468 WEALLGA-CRKHGEVEFGERLGKILLE-MEP 496
           W  +L + C+    +E  E L +++LE +EP
Sbjct: 183 WNTVLSSLCQNEQLLEALEYLREMVLEGVEP 213


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/659 (34%), Positives = 374/659 (56%), Gaps = 56/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            KQ H ++++SG  Q   V   L+  +  +   +   A  VF  +++ ++  WN+++  C 
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKT--GSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDV 168
                    + ++ +++     P++FT  +V +ACS +        Q+HA  +K G+  D 
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI------------- 215
             V ++ I +Y+  G + +A  +  +    D+  WNA++ GY+  GD              
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQES 1103

Query: 216  -EGAKELFKSTKDKNTGSYNAM---------------------ISG----FARFGRFEEA 249
             E A ++  +   K  G    +                     ISG    + + G  E A
Sbjct: 1104 GERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163

Query: 250  RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            R++FNE+   D++ W+ +I G  ++G  + AL  ++ M+  K++P ++  + ++ AC+ L
Sbjct: 1164 RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLL 1223

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             AL+QG  IH +  + +   D  + T+LVDMYAKCG ++ A  +F+      + +WNAMI
Sbjct: 1224 TALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMI 1283

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
             GLA HG A++A++ F +M+   + PDR+TF  VLSAC+H+G++    +    MQ++YGI
Sbjct: 1284 VGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            +PE+EHY C+VD L RAG + EAE+VISSMP E +A+++  LL ACR   + E G+R+ +
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1403

Query: 490  ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             LL +EP +               + ++VA  R +M++  +K +PG S +D+   +H F 
Sbjct: 1404 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFV 1463

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD SH +   IY  ++ I+++++ EGY P++   L D++EE+KE +  YHSEKLAIA+G
Sbjct: 1464 AGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYG 1523

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             + T P  T+RVIKNLRVC DCH+A K ISKVF+R++++RD  R+HHFR+G CSC D+W
Sbjct: 1524 LMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 173/381 (45%), Gaps = 24/381 (6%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWNSVLRA 107
            K+AHA IL SGH  D +++  L+  +  S+  +   A K+F++      ++  WN++L A
Sbjct: 646  KRAHARILTSGHHPDRFLTNNLITMY--SKCGSLSSARKLFDTTPDTSRDLVTWNAILSA 703

Query: 108  CLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
               H +  R    L+  +        + T   VFK C ++ +      +H + VK GL  
Sbjct: 704  ---HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQW 760

Query: 167  DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            DV V  + + +YA FG + +AR + D     DV+ WN ++  Y+  G    A  LF    
Sbjct: 761  DVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820

Query: 227  DKNTGSYNAMISGFARFGRFEE-------------ARKLF---NEMNDKDEITWSAIIDG 270
                   +  +   AR  + ++               KLF   ++ +  D I W+  +  
Sbjct: 821  RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSW 880

Query: 271  YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            + + G   EA++ F +M   ++         +L+  A L  L+ G  IH  V R+ +   
Sbjct: 881  FLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQV 940

Query: 331  AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
              +G  L++MY K G +  A  VF  M   ++ +WN MI G A+ G  + ++ +F  + R
Sbjct: 941  VSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLR 1000

Query: 391  EKMRPDRITFACVLSACAHAG 411
              + PD+ T A VL AC+  G
Sbjct: 1001 GGLLPDQFTVASVLRACSSLG 1021



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 151/370 (40%), Gaps = 60/370 (16%)

Query: 38   LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
            L   CH +     Q HA  +K+G   D +VS TL+  ++ S     E A  +F +    +
Sbjct: 1020 LGGGCHLA----TQIHACAMKAGVVLDSFVSTTLIDVYSKS--GKMEEAEFLFVNQDGFD 1073

Query: 98   VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
            +  WN+++   +   +  + + LY  M     + N+ T     KA       K+G Q+ A
Sbjct: 1074 LASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQA 1133

Query: 158  HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
             VVK G   D+ V S  + MY   G +  AR+I ++    D + W  +I G ++ G  E 
Sbjct: 1134 VVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEH 1193

Query: 218  A------KELFKSTKDK------------------------NTGSYN---------AMIS 238
            A        L K   D+                        NT   N         +++ 
Sbjct: 1194 ALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVD 1253

Query: 239  GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
             +A+ G  E+AR LF   N     +W+A+I G  + G  +EAL+ F EM+   + P +  
Sbjct: 1254 MYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVT 1313

Query: 299  LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--------TALVDMYAKCGRLDMA 350
               VL+AC+  G + +          N   +  + G        + LVD  ++ GR+  A
Sbjct: 1314 FIGVLSACSHSGLVSEAY-------ENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREA 1366

Query: 351  WKVFEDMKMK 360
             KV   M  +
Sbjct: 1367 EKVISSMPFE 1376



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 78/374 (20%)

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD---DGSKSDVICWNALI-- 206
           G + HA ++ +G   D  + ++ I MY+  G ++ AR++ D   D S+ D++ WNA++  
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSR-DLVTWNAILSA 703

Query: 207 ------DGY-----LKCGDIEGAKE----LFK-------STKDKNTGSY----------- 233
                 DG+     L+   +   +     +FK        +  ++   Y           
Sbjct: 704 HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVF 763

Query: 234 --NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
              A+++ +A+FGR  EAR LF+ M  +D + W+ ++  Y   G   EAL +F+E  R  
Sbjct: 764 VAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTG 823

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P    L C LA                  K+N      VL   L  + A   +L M  
Sbjct: 824 LRPDDVTL-CTLARVVK-------------SKQN------VLEWQLKQLKAYGTKLFM-- 861

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
              +D    +V  WN  +      G   +A++ F  M   ++  D +TF  +LS  A   
Sbjct: 862 -YDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVA--- 917

Query: 412 MIDRGLQALTYMQQMYGI------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
               GL  L   +Q++GI      D  V    C++++  + G ++ A  V   M  E + 
Sbjct: 918 ----GLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EVDL 972

Query: 466 AVWEALLGACRKHG 479
             W  ++  C   G
Sbjct: 973 VSWNTMISGCALSG 986


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/453 (45%), Positives = 301/453 (66%), Gaps = 16/453 (3%)

Query: 218 AKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           A+ LF+++     +  S+  M+ G  R G  ++AR++F+ M  ++ ++W+++I GY K  
Sbjct: 150 ARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKAD 209

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
            + +ALEVF+EM+   ++   FV +  L AC   GAL +G  I+  V+++ I VDA L T
Sbjct: 210 RFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLAT 269

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           A+VDMY KCG +D AW+VF+ +  + + TWN MIGG A+HGR DDA+ELF +M+   + P
Sbjct: 270 AVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAP 329

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D +T   VL+ACAHAG +  G + L ++   +GI+P+ EHYGC+VDL GRAG L EA++V
Sbjct: 330 DDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKV 389

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I  MPM+P+ AV  ALLGAC+ HG+V+ GE +G  +++++P N               R 
Sbjct: 390 IDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRW 449

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           D+V K+R+LM ER +    G S+I+V+G   EFR G+  HPQ +EIY M   ++ +++ E
Sbjct: 450 DEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAE 509

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY P++ + L D+ EE+KE A   HSEKLAIAFG +   P  T+R+ KNLRVC DCH AT
Sbjct: 510 GYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEAT 569

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K +S+VF R+I+VRDR R+HHF++G CSC D+W
Sbjct: 570 KYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 12/246 (4%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    + A +VF+++   N+  WNS++   ++ +     + ++ EM  +  + N F   +
Sbjct: 176 RLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATS 235

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              AC+   A   G +++  V ++G+  D  + ++ + MY   GCV++A ++ D      
Sbjct: 236 ALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARG 295

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA----MISGFARFGRFEEARKLFN 254
           +  WN +I G+   G  + A ELF   +       +     +++  A  G   E R+  N
Sbjct: 296 LTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLN 355

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            +  +  I      +  ++D + + G   EA +V +EM  D   P   VL  +L AC   
Sbjct: 356 HIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD---PDLAVLGALLGACKIH 412

Query: 310 GALDQG 315
           G +D G
Sbjct: 413 GDVDLG 418


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/688 (35%), Positives = 366/688 (53%), Gaps = 87/688 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H  ++K G  +D ++   L+  H  +   + +   KVF  + + NV  W S++     
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLI--HFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL------ 164
            + P   +SL+ EMV    +P+  T   V  AC+       G +V A++ + GL      
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269

Query: 165 ----------CGDVH---------------VKSSGIQMYACFGCVNKARQILDD----GS 195
                     CG +                + ++ +  YA  G   +A  ILD+    G 
Sbjct: 270 VNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 329

Query: 196 KSDVIC-------------------------------W----NALIDGYLKCGDIEGAKE 220
           + D +                                W    N +ID Y+KCG  E A  
Sbjct: 330 RPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR 389

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           +F    +K   S+N++ +GF R G  E A ++FN++ +++ + W+ +I G  +   +++A
Sbjct: 390 VFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDA 449

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +E+F EMQ + IK  +  +  + +AC  LGA +   W+H ++++N I  D  L TALVDM
Sbjct: 450 IELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDM 509

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           +A+CG    A +VF  M  ++V  W A IG +AM G  + A  LF +M  + ++PD + F
Sbjct: 510 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 569

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL+AC+H G +++GL   + M+  +GI P++EHYGC+VDLLGRAG L EA ++I SMP
Sbjct: 570 VQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMP 628

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
           MEPN  VW +LL ACR H  VE      + + E+ PQ                +  DVA+
Sbjct: 629 MEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVAR 688

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R  ++E+G++  PGSS + VNGVIHEF +GD SHP++  I LML+++  +    G+ P+
Sbjct: 689 VRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPD 748

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
            S VL D+DE+EKE     HSEKLAIAFG I T     IRV+KNLR+C DCHS  K+ S 
Sbjct: 749 LSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASI 808

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ R+IIVRD  R+H FR G CSC D+W
Sbjct: 809 IYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 139/519 (26%), Positives = 227/519 (43%), Gaps = 80/519 (15%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNV- 98
           +C  +   LKQ H  I K+G  Q       LV   A  +   + + A K F  + K +V 
Sbjct: 33  RCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAF-ELFKEDVR 91

Query: 99  -----FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
                F+ NS++R           I LY  M+ +   PN +T+P V   C+   A  EG+
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVH  VVK GL  DV +++  I  YA  G ++   ++ +  S+ +V+ W +LI GY +  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 214 DIEGAKELF----------------------KSTKDKNTGS-----------------YN 234
             + A  LF                         +D + G                   N
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           A++  + + G  + A++LF+E  D++ + ++ I+  Y + G  +EAL + +EM +   +P
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            +  +   ++A A L  L  G   H +V RN +     +G  ++DMY KCG+ +MA +VF
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 355 EDMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIE 383
           + M  K V +WN+                               MI GL      +DAIE
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF +MQ E ++ DR+T   + SAC + G  +      TY+++  GI  ++     +VD+ 
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEK-NGIPCDMRLNTALVDMF 510

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            R G    A +V + M  E + + W A +G     G  E
Sbjct: 511 ARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGNGE 548


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/623 (36%), Positives = 346/623 (55%), Gaps = 77/623 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +  KQ+HA ILK G F D + +  LV   A S + + + A  +F  + +P  F +N+++R
Sbjct: 2   EEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMR 61

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             ++       +  Y EM     KP+ FTYPT+ KAC+   A +EG+QVHAH++K GL  
Sbjct: 62  GHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGL-- 119

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
                                        ++DV   N+LI  Y KCG+I           
Sbjct: 120 -----------------------------ENDVFVQNSLISMYGKCGEI----------- 139

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
               G   A                +F +MN++   +WSA+I  +   G + + L +  +
Sbjct: 140 ----GVCCA----------------VFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 179

Query: 287 MQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M  +   +  + +L  VL+AC  LGALD G  +H  + RN   ++ ++ T+L++MY KCG
Sbjct: 180 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCG 239

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L     +F+ M  K   +++ MI GLAMHG   + + +F +M  + + PD I +  VL+
Sbjct: 240 XLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLN 299

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG++  GLQ    M+  +GI+P ++HYGC+VDL+GRAG + EA E+I SMPMEPN 
Sbjct: 300 ACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPND 359

Query: 466 AVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLM 511
            +W +LL A + H  ++ GE   K              +L  M  Q +R +DVA+ R  M
Sbjct: 360 VLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNM 419

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
             +G+   PG S+++V   +H F + D  HPQ + +Y ML ++  +LK EGY P+++QVL
Sbjct: 420 FSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVL 479

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D+DEEEK+     HS+KLAIA+  I+T  G+ +R+++NLR+C DCH+ TKLIS +F R+
Sbjct: 480 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDRE 539

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I VRDR R+HHF++G CSC D+W
Sbjct: 540 ITVRDRHRFHHFKDGACSCRDYW 562


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/662 (35%), Positives = 365/662 (55%), Gaps = 36/662 (5%)

Query: 21  ATNIPTSEFSQKT-------ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           ++++P  E  QK+       +  +L+T  +   + L+  H+ I+      +  +   L++
Sbjct: 25  SSSLPKLELDQKSPQETVFLLGQVLDT--YPDIRTLRTVHSRIILEDLRCNSSLGVKLMR 82

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
            +A+    +   A KVF+ + + NV + N ++R+ + +      + ++  M G + +P+ 
Sbjct: 83  AYAS--LKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDH 140

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +T+P V KACS +     G ++H    K GL   + V +  + MY   G +++AR +LD+
Sbjct: 141 YTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDE 200

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG--RFE 247
            S+ DV+ WN+L+ GY +    + A E+ +  +      + G+  +++   +        
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 260

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
             + +F +M  K  ++W+ +I  Y K+    EA+E+++ M+ D  +P    ++ VL AC 
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
              AL  G  IH +++R  +  + +L  AL+DMYAKCG L+ A  VFE+MK ++V +W A
Sbjct: 321 DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTA 380

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI      GR  DA+ LF K+Q   + PD I F   L+AC+HAG+++ G      M   Y
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 440

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P +EH  C+VDLLGRAG + EA   I  M MEPN  VW ALLGACR H + + G   
Sbjct: 441 KITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLA 500

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L ++ P+                R ++V  +R +MK +G+K NPG+S ++VN +IH 
Sbjct: 501 ADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHT 560

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SHPQ  EIY  L  +++K+K  GY P+S   L D++EE+KET    HSEKLAI 
Sbjct: 561 FLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIV 620

Query: 594 FGFINT-----DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           F  +NT     D   TIR+ KNLR+C DCH A KLIS++  R+II+RD  R+H FR G C
Sbjct: 621 FALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVC 680

Query: 649 SC 650
           SC
Sbjct: 681 SC 682


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 351/632 (55%), Gaps = 78/632 (12%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L  KC ++ +  KQ+HA ILK G F D + +  LV   A S + + + A  +F  + +  
Sbjct: 37  LLKKC-SNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELG 95

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
            F +N+++R  ++       +  Y EM     KP+ FTYPT+ KAC+   A +EG+QVHA
Sbjct: 96  SFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHA 155

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           H++K GL                               ++DV   N+LI  Y KCG+I  
Sbjct: 156 HILKLGL-------------------------------ENDVFVQNSLISMYGKCGEI-- 182

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                        G   A                +F +MN++   +WSA+I  +   G +
Sbjct: 183 -------------GVCCA----------------VFEQMNERSVASWSALITAHASLGMW 213

Query: 278 KEALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            + L +  +M  +   +  + +L  VL+AC  LGALD G  +H  + RN   ++ ++ T+
Sbjct: 214 SDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETS 273

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L++MY KCG L     +F+ M  K   +++ MI GLAMHG   + + +F +M  + + PD
Sbjct: 274 LIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPD 333

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I +  VL+AC+HAG++  GLQ    M+  +GI+P ++HYGC+VDL+GRAG + EA E+I
Sbjct: 334 DIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELI 393

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCD 502
            SMPMEPN  +W +LL A + H  ++ GE   K              +L  M  Q +R +
Sbjct: 394 KSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWE 453

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DVAK R  M  +G+   PG S+++V   +H F + D  HPQ + +Y ML ++  +LK EG
Sbjct: 454 DVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEG 513

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           YSP+++QVL D+DEEEK+     HS+KLAIA+  I+T  G+ IR+++NLR+C DCH+ TK
Sbjct: 514 YSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTK 573

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LIS +F R+I VRDR R+HHF++G CSC D+W
Sbjct: 574 LISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 353/624 (56%), Gaps = 81/624 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGT--LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           L+Q HA +L           G   ++   A S + + + A K+F+ + +PN+F WNS++R
Sbjct: 4   LRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63

Query: 107 ACLEHNEPWR-VISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            C +   P +  + L+ +MV      PN FT   V KACSI  A +EG QVHA+V+K+G 
Sbjct: 64  GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGF 123

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                V++                               AL++ Y KC DI  A      
Sbjct: 124 GSSPFVET-------------------------------ALVNFYAKCEDIVLAS----- 147

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                     K+F+E+ D++ + WS +I GY + G   EAL +F
Sbjct: 148 --------------------------KVFDEITDRNLVAWSTMISGYARIGLVNEALGLF 181

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +MQ+  + P +  +  V++ACA+ GALD G W+H ++ +  I  D  L TALV+MYAKC
Sbjct: 182 RDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC 241

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G ++ A +VF+ M +K+   W++MI GLA++G A+DA+E FF+M+  K++P+ +TF  VL
Sbjct: 242 GCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVL 301

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SACAH+G++  G +  + M + +GI P +E YGC+VDLL RA  + +A  ++ +MP+ PN
Sbjct: 302 SACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPN 360

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
             +W  LL  C+K   ++  E + + LLE+EP N               + + ++++RK 
Sbjct: 361 PVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKK 420

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MK  GIK  PG S I+V+G++HEF  GD SHP+  E+  +L+ I +++   G+ P  S V
Sbjct: 421 MKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDV 480

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L ++ +EEKE A   HSE+LAIA+G + T     IR++KNLRVC DCH  TK+IS  ++R
Sbjct: 481 LHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRR 540

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +IIVRDRVR+H F NG CSC DFW
Sbjct: 541 EIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/453 (45%), Positives = 300/453 (66%), Gaps = 16/453 (3%)

Query: 218 AKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           A+ LF+++     +  S+  M+ G  R G  ++AR++F+ M  ++ ++W+++I GY K  
Sbjct: 150 ARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKAD 209

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
            + +ALEVF+EM+   ++   FV +  L AC   GAL +G  I+  V+++ I VDA L T
Sbjct: 210 RFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLAT 269

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           A+VDMY KCG +D AW VF+ +  + + TWN MIGG A+HGR DDA+ELF +M+   + P
Sbjct: 270 AVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAP 329

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D +T   VL+ACAHAG +  G + L ++   +GI+P+ EHYGC+VDL GRAG L EA++V
Sbjct: 330 DDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKV 389

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I  MPM+P+ AV  ALLGAC+ HG+V+ GE +G  +++++P N               R 
Sbjct: 390 IDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRW 449

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           D+V K+R+LM ER +    G S+I+V+G   EFR G+  HPQ +EIY M   ++ +++ E
Sbjct: 450 DEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAE 509

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY P++ + L D+ EE+KE A   HSEKLAIAFG +   P  T+R+ KNLRVC DCH AT
Sbjct: 510 GYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEAT 569

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K +S+VF R+I+VRDR R+HHF++G CSC D+W
Sbjct: 570 KYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    + A +VF+++   N+  WNS++   ++ +     + ++ EM  +  + N F   +
Sbjct: 176 RLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATS 235

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              AC+   A   G +++  V ++G+  D  + ++ + MY   GCV++A  + D      
Sbjct: 236 ALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARG 295

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA----MISGFARFGRFEEARKLFN 254
           +  WN +I G+   G  + A ELF   +       +     +++  A  G   E R+  N
Sbjct: 296 LTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLN 355

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            +  +  I      +  ++D + + G   EA +V +EM  D   P   VL  +L AC   
Sbjct: 356 HIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD---PDLAVLGALLGACKIH 412

Query: 310 GALDQG 315
           G +D G
Sbjct: 413 GDVDLG 418


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/650 (35%), Positives = 372/650 (57%), Gaps = 57/650 (8%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFEL 85
           +  S   ++ +L+ KC  S   L+Q HA ++K+      + VS  +  C  +      + 
Sbjct: 2   TAISTNPVVSVLD-KC-KSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDY 59

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV--DSKPNKFTYPTVFKAC 143
           A  VF+ +  PN F++ ++++   + + P   + LY+ M+     S   +F+ P+V KAC
Sbjct: 60  ASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKAC 119

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
               A  EG QVH  V+K  L  D  V +S ++MY  FG                     
Sbjct: 120 GKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFG--------------------- 158

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
                     +IE A+ +F    +++  S+N+MI+G+ + G  E A+K+F  M+DKD +T
Sbjct: 159 ----------EIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVT 208

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+++I  Y ++    +AL++F EM    ++P    +  VL+A A LG +++G W+H +V 
Sbjct: 209 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 268

Query: 324 RNSICVDA-VLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDA 381
            N I + +  +G+AL+DMY+KCG ++ A+ VF  +   + +  WN+MI GLA+HG A +A
Sbjct: 269 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 328

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +++F +M+R  + P+ ITF  +LS C+H G+++ G      M + Y I P ++HYGC++D
Sbjct: 329 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 388

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-- 499
           L GRAG L +A  VI +MP E +   W+A+L A  KHG +E G+      +E+ P +   
Sbjct: 389 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 448

Query: 500 ------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG---DGSHPQV 544
                       R DDVAK+R +M++RG+K   G S + VNG +HEF  G   D S+   
Sbjct: 449 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYS-- 506

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
            ++   + +++ +LK++GY P+ +QVL DI++E KE+    HSEK+AIAFG I+ +  A 
Sbjct: 507 GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAP 566

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I ++KNLRVC DCH   KL+SKV+ R II+RD+ R+HHF NG CSCN++W
Sbjct: 567 IHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/660 (34%), Positives = 357/660 (54%), Gaps = 59/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H+ +LK+G   D+ + G+L+  +   +      AL++F S  + NV +WN +L A  
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYV--KCGVIVEALEIFKSGDRTNVVLWNLMLVAYG 321

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + ++  +   L+ +MV    +PN+FTYP + + C+       G Q+H   +K G   D++
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMY 381

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           V    I MY+ +G ++KAR+IL+     DV+ W ++I GY++                  
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 212 --------------CGDIEGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                         C  I+  ++       ++ S    +   +NA+++ +AR GR +EA 
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAF 501

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LF  +  KD+ITW+ ++ G+ + G Y+EALEVF +M +  +K   F     ++A A+L 
Sbjct: 502 SLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLA 561

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            + QG  IH  V +     +  +  AL+ +Y KCG ++ A   F +M  +   +WN +I 
Sbjct: 562 DIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIIT 621

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
             + HG   +A++LF +M++E ++P+ +TF  VL+AC+H G+++ GL     M   +GI 
Sbjct: 622 SCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIH 681

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P  +HY C+VD+LGRAG L  A + +  MP+  NA VW  LL ACR H  +E GE   K 
Sbjct: 682 PRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKY 741

Query: 491 LLEMEPQNR----------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           LLE+EP +                  C D   +RK+MK+RG++  PG S I+V  V+H F
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTGKWACRD--HVRKMMKDRGVRKEPGRSWIEVKNVVHAF 799

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HP   +IY  L  + ++L   GY   +  +  + ++E+K+     HSEKLA+AF
Sbjct: 800 FVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAF 859

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G ++  P   +RVIKNLRVC DCH+  K  S+V  R+I++RD  R+HHF NG CSC DFW
Sbjct: 860 GLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 233/494 (47%), Gaps = 46/494 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  HA + K G   +  V   L+  +   RF +  LA +VF+ +   +   +N+++    
Sbjct: 163 RLVHAQVYKQGSCSETVVGNALIALYL--RFGSLSLAERVFSEMPYCDRVTFNTLISRHA 220

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + ++ EM      P+  T  ++  AC+      +G Q+H++++K G+  D  
Sbjct: 221 QCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYI 280

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           ++ S + +Y   G + +A +I   G +++V+ WN ++  Y +  D+  + +LF       
Sbjct: 281 IEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAG 340

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+  + +      +I  ++++G  ++AR
Sbjct: 341 VRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKAR 400

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++   +  KD ++W+++I GY +  + KEALE F +MQ   I P    L+  ++ACA + 
Sbjct: 401 RILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIK 460

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A+ QG  IH  V  +    D  +  ALV++YA+CGR   A+ +FE ++ K+  TWN M+ 
Sbjct: 461 AMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVS 520

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A  G  ++A+E+F KM +  ++ +  TF   +SA A+   I +G Q    + +  G  
Sbjct: 521 GFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCT 579

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            E E    ++ L G+ G + +A+     M  E N   W  ++ +C +HG   +G     +
Sbjct: 580 SETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHG---WGLEALDL 635

Query: 491 LLEMEPQNRRCDDV 504
             +M+ +  + +DV
Sbjct: 636 FDQMKQEGLKPNDV 649



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 203/482 (42%), Gaps = 55/482 (11%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  +   HA  +  G  +D      L+  +A       + A +VF  +   +   W ++L
Sbjct: 58  WPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGL--VQRARRVFEQLSARDNVSWVAML 115

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
                +      + LY +M      P  +   +V  AC+     ++G  VHA V K G C
Sbjct: 116 SGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSC 175

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
            +  V ++ I +Y  FG ++ A ++  +    D + +N LI  + +CG+ E A E+F+  
Sbjct: 176 SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM 235

Query: 224 --------------------STKDKNTG----SY-------------NAMISGFARFGRF 246
                               S  D N G    SY              +++  + + G  
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVI 295

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            EA ++F   +  + + W+ ++  Y +     ++ ++F +M    ++P +F   C+L  C
Sbjct: 296 VEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTC 355

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G ++ G  IH    +     D  +   L+DMY+K G LD A ++ E ++ K+V +W 
Sbjct: 356 TYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWT 415

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +MI G   H    +A+E F  MQ   + PD I  A  +SACA       G++A+   QQ+
Sbjct: 416 SMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACA-------GIKAMRQGQQI 468

Query: 427 Y------GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +      G   +V  +  +V+L  R G   EA  +  ++    +   W  ++    + G 
Sbjct: 469 HSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMVSGFAQSGL 527

Query: 481 VE 482
            E
Sbjct: 528 YE 529



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 192/420 (45%), Gaps = 48/420 (11%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV-HAHVV 160
           N  L   L H +P +++SL++  V          +    + C  +      V V HA  +
Sbjct: 10  NKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAI 69

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA-- 218
             GL  D    +  I +YA  G V +AR++ +  S  D + W A++ GY + G  E A  
Sbjct: 70  TCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVG 129

Query: 219 -------------------------------------KELFKSTKDKNTGSYNAMISGFA 241
                                                 +++K      T   NA+I+ + 
Sbjct: 130 LYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYL 189

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           RFG    A ++F+EM   D +T++ +I  + + G  + ALE+F EM+     P    ++ 
Sbjct: 190 RFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIAS 249

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +LAACAS+G L++G  +H ++ +  +  D ++  +L+D+Y KCG +  A ++F+      
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTN 309

Query: 362 VFTWNAMIGGLAMHGRADD---AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           V  WN M   L  +G+  D   + +LF +M    +RP+  T+ C+L  C +AG I+ G Q
Sbjct: 310 VVLWNLM---LVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
            +  +    G + ++   G ++D+  + G+L +A  ++  +  + +   W +++    +H
Sbjct: 367 -IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYVQH 424


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/655 (35%), Positives = 358/655 (54%), Gaps = 84/655 (12%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKC---- 74
           + A++ P     ++  L +L   C+ +   L Q H  ILK G   +  V           
Sbjct: 17  VLASSTPNPRAPEQNCLALLQA-CN-ALPKLTQIHTHILKLGLHNNPLVLTKFASISSLI 74

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW-RVISLYSEMVGVDSKPNK 133
           HA    ++F  + +    ++  + F++N+++RA  +      + ++LY  M+     PNK
Sbjct: 75  HATDYAASFLFSAEADTRLY--DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNK 132

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           FTYP V KAC+  E    G  VH  VVK G                 F C          
Sbjct: 133 FTYPFVLKACAGLEVLNLGQTVHGSVVKFG-----------------FDC---------- 165

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
               D+   N ++  Y  C                               G    ARK+F
Sbjct: 166 ----DIHVQNTMVHMYSCCA------------------------------GGINSARKVF 191

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           +EM   D +TWSA+I GY + G   EA+ +F EMQ  ++ P +  +  +L+AC  LGAL+
Sbjct: 192 DEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALE 251

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G WI  +++R+ I     +  AL+DM+AKCG +  A K+F  M  K + +W ++I G+A
Sbjct: 252 LGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMA 311

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  +A  LF +M    + PD + F  +LSAC+H+G+++RG +    M + Y + P++
Sbjct: 312 MHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKI 371

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHYGC+VD+  R G + EA E + +MP+EPN  +   L+ ACR HGE + GE++ K+L++
Sbjct: 372 EHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMK 431

Query: 494 MEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
            EP              +    +   K+R++M+ +G+K  PGS+MI+++  I+EF  GD 
Sbjct: 432 HEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDK 491

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SH Q KEIY M+ ++  ++K  GY P++S+VL DI+EE+KE +   HSEKLAIAFG + T
Sbjct: 492 SHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRT 551

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR++KNLRVC DCHSA+K ISK++ R+II+RDR R+HHF++G+CSC DFW
Sbjct: 552 PPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/451 (43%), Positives = 294/451 (65%), Gaps = 14/451 (3%)

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A++LF     +N     AMISG++R GR E+AR +F++M +KD + WSA+I GY +    
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EAL +F+EMQ   IKP +  +  V++ACA LG LD+  WIH +V +N +     +  AL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMYAKCG L  A  VFE M+ + V +W +MI   A+HG A +A++ F++M+ E ++P+ 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +TF  VL AC+HAG+++ G +    M   + I P+ EHYGC+VDL GRA  L +A E++ 
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDD 503
           +MP+ PN  +W +L+ AC+ HGE E GE   K +LE+EP              ++RR  D
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           V ++R LMK+RGI    G S I++N  ++EF   D  H Q  +IY  L +++++LK+ GY
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGY 361

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
           +PN+  VL D++EE K+    +HSEKLA+ +G +    G+ IR++KNLRVCEDCH+  KL
Sbjct: 362 TPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKL 421

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +SKV+  +IIVRDR R+HH++ G CSCND+W
Sbjct: 422 VSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR    E A  +F+ + + ++  W++++    E ++P   ++L+SEM     KP++ T  
Sbjct: 25  SRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTIL 84

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +V  AC+          +H +V KNGL G + V ++ I MYA  G +  AR + +     
Sbjct: 85  SVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSR 144

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLF 253
           +VI W ++I+ +   GD   A + F   KD+N      ++  ++   +  G  EE R+ F
Sbjct: 145 NVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTF 204

Query: 254 NEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
             M ++  IT     +  ++D + +    ++ALE+   M    + P   +   ++AAC  
Sbjct: 205 ASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETM---PLAPNVVIWGSLMAACQI 261

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            G  + G +    V       D  L   L ++YAK    D  W+
Sbjct: 262 HGENELGEFAAKQVLELEPDHDGAL-VQLSNIYAK----DRRWQ 300



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 33/163 (20%)

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD---------------------------- 380
           MA K+F  +  + +    AMI G +  GR +D                            
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60

Query: 381 ---AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
              A+ LF +MQ   ++PD++T   V+SACA  G++DR      Y+ +  G+   +    
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDK-NGLGGALPVNN 119

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            ++D+  + G L  A  V   M    N   W +++ A   HG+
Sbjct: 120 ALIDMYAKCGNLGAARGVFEKMQ-SRNVISWTSMINAFAIHGD 161


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/644 (36%), Positives = 356/644 (55%), Gaps = 79/644 (12%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
            ++F+++  L +L  +C  S +  K+ HA ILK G F D +    LV   A SR+ + E 
Sbjct: 26  NAKFNEQGWLSLLK-RC-KSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEY 83

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  +F  + +P  F +N+++R  +   +    + LY EM+    +P+ FTYP V KACS+
Sbjct: 84  ACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSL 143

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             A KEGVQ+HAHV   GL                               + DV   N L
Sbjct: 144 LVALKEGVQIHAHVFNAGL-------------------------------EVDVFVQNGL 172

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y KCG I                               E A  +F +M++K   +WS
Sbjct: 173 ISMYGKCGAI-------------------------------EHAGVVFEQMDEKSVASWS 201

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +II  +     + E L +  +M R+ + +  + +L   L+AC  LG+ + G  IH  + R
Sbjct: 202 SIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLR 261

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N   ++ V+ T+L+DMY KCG L+    VF++M  K  +++  MI GLA+HGR  +A+ +
Sbjct: 262 NISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRV 321

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F  M  E + PD + +  VLSAC+HAG++  G Q    MQ  + I P ++HYGC+VDL+G
Sbjct: 322 FSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMG 381

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE-------RLGK-------I 490
           RAG L EA ++I SMP++PN  VW +LL AC+ H  +E GE       +L K       +
Sbjct: 382 RAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLV 441

Query: 491 LLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
           L  M  + ++  +VA++R  M E+ +   PG S+++ N  +++F + D S PQ + IY M
Sbjct: 442 LANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDM 501

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           ++++  +LK EGY+P+ SQVL D+DE+EK    K+HS+KLAIAF  I T  G+ +R+ +N
Sbjct: 502 IQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRN 561

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LR+C DCH+ TK IS +++R+I VRD  R+HHF++G CSC D+W
Sbjct: 562 LRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 346/591 (58%), Gaps = 22/591 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + + AL+VF+ +   N   WNS+L       +P R++  + ++     +P+ F+Y  
Sbjct: 73  RSGDIDGALRVFHGMRAKNTITWNSLLIGI--SKDPSRMMEAH-QLFDEIPEPDTFSY-N 128

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  +C +   + E  Q            D    ++ I  YA  G + KAR++     + +
Sbjct: 129 IMLSCYVRNVNFEKAQ---SFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKN 185

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN- 257
            + WNA+I GY++CGD+E A   FK    +   ++ AMI+G+ +  + E A  +F +M  
Sbjct: 186 EVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTV 245

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           +K+ +TW+A+I GY ++   ++ L++F  M  + I+P    LS  L  C+ L AL  G  
Sbjct: 246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQ 305

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH  V ++++C D    T+L+ MY KCG L  AWK+FE MK K+V  WNAMI G A HG 
Sbjct: 306 IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGN 365

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           AD A+ LF +M   K+RPD ITF  VL AC HAG+++ G+     M + Y ++P+ +HY 
Sbjct: 366 ADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYT 425

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           C+VDLLGRAG L EA ++I SMP  P+AAV+  LLGACR H  VE  E   + LL++  Q
Sbjct: 426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485

Query: 498 N--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
           N               R +DVA++RK MKE  +   PG S I++   +H FR+ D  HP+
Sbjct: 486 NAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPE 545

Query: 544 VKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGA 603
           +  I+  LK++ +K+K+ GY P     L +++EE+KE    +HSEKLA+AFG I    G+
Sbjct: 546 LDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGS 605

Query: 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I+V KNLR+C DCH A K IS++ KR+IIVRD  R+HHF++G CSC D+W
Sbjct: 606 QIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 43/313 (13%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKN--------------------------------T 230
           N +I   ++ GDI+GA  +F   + KN                                T
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            SYN M+S + R   FE+A+  F+ M  KD  +W+ +I GY + G  ++A E+F  M   
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM--- 181

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            ++  +   + +++     G L++      H  + +     V  TA++  Y K  ++++A
Sbjct: 182 -MEKNEVSWNAMISGYIECGDLEKA----SHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236

Query: 351 WKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
             +F+DM + K + TWNAMI G   + R +D ++LF  M  E +RP+    +  L  C+ 
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
              +  G Q    + +    + +V     ++ +  + G L +A ++   M  + +   W 
Sbjct: 297 LSALQLGRQIHQIVSKSTLCN-DVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWN 354

Query: 470 ALLGACRKHGEVE 482
           A++    +HG  +
Sbjct: 355 AMISGYAQHGNAD 367


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/658 (32%), Positives = 359/658 (54%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  +++     H  +  ++  + N +      AL VF ++  P V  W SV+R   
Sbjct: 25  KQLHAQFIRTQSLS-HTSASIVISIYTNLKL--LHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + +   R ++ + EM      P+   +P+V K+C++    + G  VH  +V+ G+  D++
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST---- 225
             ++ + MY+    ++  R++ +   + DV+ +N +I GY + G  E A  + +      
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 226 ----------------------KDKNTGSY-------------NAMISGFARFGRFEEAR 250
                                 K K    Y             ++++  +A+  R E++ 
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ +  +D I+W++++ GY ++G Y EAL +F +M   K++P     S V+ ACA L 
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L  G  +H +V R     +  + +ALVDMY+KCG +  A K+F+ M + +  +W A+I 
Sbjct: 322 TLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIM 381

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A+HG   +A+ LF +M+R+ ++P+++ F  VL+AC+H G++D        M ++YG++
Sbjct: 382 GHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 441

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK- 489
            E+EHY  + DLLGRAG L EA + IS M +EP  +VW  LL +C  H  +E  E++ + 
Sbjct: 442 QELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEK 501

Query: 490 -------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
                        ++  M   N R  ++AK+R  ++++G++  P  S I++    H F +
Sbjct: 502 IFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVS 561

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP +  I   LK ++E+++ EGY  ++S VL D+DEE K      HSE+LA+AFG 
Sbjct: 562 GDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGI 621

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           INT+PG TIRV KN+R+C DCH A K ISK+ +R+IIVRD  R+HHF  G CSC D+W
Sbjct: 622 INTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 170/355 (47%), Gaps = 27/355 (7%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+  +++    F+  ++L I +   +      K+ H  +++ G   D Y+  +LV  +A 
Sbjct: 196 EMGTSDLKPDAFTLSSVLPIFSE--YVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK 253

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S  +  E + +VF+ +++ +   WNS++   +++      + L+ +MV    +P    + 
Sbjct: 254 S--ARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFS 311

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +V  AC+       G Q+H +V++ G   ++ + S+ + MY+  G +  AR+I D  +  
Sbjct: 312 SVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLH 371

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLF 253
           D + W A+I G+   G    A  LF+  K +    N  ++ A+++  +  G  +EA   F
Sbjct: 372 DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 431

Query: 254 NEMN-----DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           N M      +++   ++A+ D   + G  +EA +  ++M   +++P   V S +L++C  
Sbjct: 432 NSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKM---RVEPTGSVWSTLLSSC-- 486

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKVFEDMKMK 360
             ++ + + + + V      +D+    A V   +MYA  GR    WK    ++++
Sbjct: 487 --SVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGR----WKEMAKLRLR 535



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 127/273 (46%), Gaps = 5/273 (1%)

Query: 218 AKEL---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           AK+L   F  T+  +  S + +IS +       EA  +F  +     + W ++I  +T  
Sbjct: 24  AKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQ 83

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
             +  AL  F EM+     P   V   VL +C  +  L  G  +H  + R  +  D   G
Sbjct: 84  SLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTG 143

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            AL++MY+K   +D   KVFE M  K+V ++N +I G A  G  +DA+ +  +M    ++
Sbjct: 144 NALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLK 203

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD  T + VL   +    + +G +   Y+ +  GID +V     +VD+  ++  + ++E 
Sbjct: 204 PDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSER 262

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           V S +    ++  W +L+    ++G      RL
Sbjct: 263 VFSHL-YRRDSISWNSLVAGYVQNGRYNEALRL 294


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 367/660 (55%), Gaps = 58/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H    K G   + +V+ +L+  H  SRF    +A  +F+ +   ++  WN+++   +
Sbjct: 235 RKIHCWAFKLGFQWNVFVAASLI--HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + +  EM     K N  T  ++   C         + +H +V+K+GL  D+ 
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ I MYA FG +  AR+       +DV+ WN++I  Y +  D   A   F       
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 223 ----------------KSTKDKNTGSY-----------------NAMISGFARFGRFEEA 249
                           +S   KN+ S                  NA++  +A+ G  + A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACAS 308
            K+F  +  KD I+W+ +I GY ++G   EA+EV+  M+  K I P +     +L A A 
Sbjct: 473 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GAL QG+ IH  V + ++ +D  + T L+D+Y KCGRL  A  +F  +  +   TWNA+
Sbjct: 533 VGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 592

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I    +HG A+  ++LF +M  E ++PD +TF  +LSAC+H+G ++ G      MQ+ YG
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YG 651

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDLLGRAGYL  A + I  MP++P+A++W ALLGACR HG +E G+   
Sbjct: 652 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 711

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L E++ +N               + + V K+R L +ERG+K  PG S I+VN  +  F
Sbjct: 712 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 771

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            TG+ SHP+ KEIY  L+ +  K+K  GY P+ S VL D++E+EKE     HSE+LAIAF
Sbjct: 772 YTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 831

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T P + IR+ KNLRVC DCH+ATK IS++ +R+I+VRD  R+HHF++G CSC D+W
Sbjct: 832 GIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 262/543 (48%), Gaps = 65/543 (11%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFS------QKTILD---ILNTKCHTSWQHLKQ 51
           + ++ T+  LP   +P ++ +    + +FS      Q   +D   + ++   T +   K 
Sbjct: 80  LKSRYTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFA--KC 137

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            HA+++ +G  Q  ++S  LV  +AN    +  L+   F+ + + +V+ WNS++ A + +
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 112 NEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                 I  + +++ V   +P+ +T+P V KAC       +G ++H    K G   +V V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFV 252

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------------IEGA 218
            +S I MY+ FG    AR + DD    D+  WNA+I G ++ G+            +EG 
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 219 KELFKST----------KDKNTGSY-----------------NAMISGFARFGRFEEARK 251
           K  F +            D +T                    NA+I+ +A+FG  E+ARK
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            F +M   D ++W++II  Y ++     A   F +MQ +  +P    L  + +  A    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 312 LDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 +H  + +R  +  D V+G A+VDMYAK G LD A KVFE + +K+V +WN +I 
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLIT 492

Query: 371 GLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           G A +G A +AIE++  M+  +++ P++ T+  +L A AH G + +G++    + +   +
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NL 551

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE-----FG 484
             +V    C++D+ G+ G L +A  +   +P E ++  W A++     HG  E     FG
Sbjct: 552 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 485 ERL 487
           E L
Sbjct: 611 EML 613


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/657 (35%), Positives = 366/657 (55%), Gaps = 59/657 (8%)

Query: 56  ILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           ++K+G+ Q D  V   L+      R  +   A KVF  + + N   W  ++   ++    
Sbjct: 194 VIKTGYLQSDVCVGCGLIDMFVKGR-GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYA 252

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
              I L+ +M+    +P++FT   V  AC+  E    G Q+H+  +++GL  D  V    
Sbjct: 253 GEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312

Query: 175 IQMYA---CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI-EGAKELFK------- 223
           I MYA     G +  AR+I D     +V  W A+I GY++ G   E A +LF+       
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 224 -------STKDKNTGSY-------------------------NAMISGFARFGRFEEARK 251
                  S+  K   +                          N++IS +AR GR ++ARK
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            F+ + +K+ I+++ +ID Y K+   +EALE+FNE++   +    F  + +L+  AS+G 
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           + +G  IH  V ++ + ++  +  AL+ MY++CG ++ A++VFEDM+ + V +W ++I G
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A HG A  A+ELF KM  E +RP+ +T+  VLSAC+H G+++ G +    M   +G+ P
Sbjct: 553 FAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIP 612

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +EHY CIVD+LGR+G L+EA + I+SMP + +A VW   LGACR HG +E G+   K++
Sbjct: 613 RMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMI 672

Query: 492 LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           +E EP +               + D+V+ +RK MKE+ +    G S ++V   +H+F  G
Sbjct: 673 IEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVG 732

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SHP+  EIY  L+ +  K+K  GY PN   VL D++EE+KE     HSEK+A+AFG I
Sbjct: 733 DTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLI 792

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +T     IRV KNLR+C DCHSA K IS    R+IIVRD  R+HH ++G+CSCN++W
Sbjct: 793 STSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 173/376 (46%), Gaps = 49/376 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H+  ++ G   D  V   L+  +A  S   +   A K+F+ +   NVF W +++   
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 109 LE---HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           ++   ++E    + L+  M+     PN FT+ +  KAC+   A + G QV  H VK G  
Sbjct: 351 VQKGGYDE--EALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFS 408

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
               V +S I MYA  G ++ AR+  D   + ++I +N +ID Y K  + E A ELF   
Sbjct: 409 SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468

Query: 226 KDKNTGSY---------------------------------------NAMISGFARFGRF 246
           +D+  G+                                        NA+IS ++R G  
Sbjct: 469 EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNI 528

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A ++F +M D++ I+W++II G+ K G+  +ALE+F++M  + ++P +     VL+AC
Sbjct: 529 ESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSAC 588

Query: 307 ASLGALDQGIWIH--DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           + +G +++G W H       + +         +VD+  + G L  A +    M  K +  
Sbjct: 589 SHVGLVNEG-WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADAL 647

Query: 364 TWNAMIGGLAMHGRAD 379
            W   +G   +HG  +
Sbjct: 648 VWRTFLGACRVHGNLE 663



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 208/479 (43%), Gaps = 51/479 (10%)

Query: 78  SRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
           S+   +E A  +F  +    ++  W++++     +N  +R +  + +M+     PN++ +
Sbjct: 112 SKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 171

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYA-CFGCVNKARQILDDG 194
               +ACS  E    G  +   V+K G L  DV V    I M+    G +  A ++ +  
Sbjct: 172 AAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKM 231

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARF------- 243
            + + + W  +I   ++ G    A +LF     S  + +  + + +IS  A         
Sbjct: 232 PERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQ 291

Query: 244 -------------------------------GRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                          G    ARK+F+++ D +  +W+A+I GY 
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYV 351

Query: 273 -KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            K GY +EAL++F  M    + P  F  S  L ACA+L AL  G  +  H  +       
Sbjct: 352 QKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVN 411

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +  +L+ MYA+ GR+D A K F+ +  K + ++N +I   A +  +++A+ELF +++ +
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            M     TFA +LS  A  G I +G Q    + +  G+         ++ +  R G +  
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIES 530

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
           A +V   M  + N   W +++    KHG   F  +  ++  +M  +  R ++V  +  L
Sbjct: 531 AFQVFEDME-DRNVISWTSIITGFAKHG---FATQALELFHKMLEEGVRPNEVTYIAVL 585



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 165/409 (40%), Gaps = 80/409 (19%)

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + IS    MV   S P+  TY    K C  T +   G  VH  + ++ L           
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL----------- 97

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                               + D +  N+LI  Y KCG  E A  +F+            
Sbjct: 98  --------------------QLDSVTLNSLISLYSKCGQWEKATSIFR------------ 125

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
            + G +R                 D I+WSA++  +  +     AL  F +M  +   P 
Sbjct: 126 -LMGSSR-----------------DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDM--AWK 352
           ++  +    AC++   +  G  I   V K   +  D  +G  L+DM+ K GR D+  A+K
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFK 226

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VFE M  +   TW  MI  L   G A +AI+LF  M      PDR T + V+SACA+  +
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA---GYLAEAEEVISSMPMEPNAAVWE 469
           +  G Q L      +G+  +     C++++  +    G +  A ++   + ++ N   W 
Sbjct: 287 LLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWT 344

Query: 470 ALL-GACRKHGEVEFGERL--GKILLEMEPQN-------RRCDDVAKMR 508
           A++ G  +K G  E    L  G IL  + P +       + C ++A +R
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR 393



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 5/209 (2%)

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G   +A+     M      P     S  L  C    + D G  +H+ + ++ + +D+V 
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 334 GTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             +L+ +Y+KCG+ + A  +F  M   +++ +W+AM+   A +     A+  F  M    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRA-GYLA 450
             P+   FA    AC+ A  +  G     ++ +   +  +V   GC ++D+  +  G L 
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDV-CVGCGLIDMFVKGRGDLV 222

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHG 479
            A +V   MP E NA  W  ++    + G
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMITRLMQFG 250


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/486 (44%), Positives = 307/486 (63%), Gaps = 21/486 (4%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRF 246
           Q L  G+ +  +  N L+  Y   G +  A+ +F ++     +  S+N M+SG+ + G  
Sbjct: 141 QALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDL 200

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E AR++F  M ++  ++WSA+ID   + G + EAL +F++M  +  +P   VLS VL AC
Sbjct: 201 EAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKAC 260

Query: 307 ASLGALDQGIWIHDHVKRNSICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           A LGAL++G W+H  +K   +     + +L TALVDMY KCG +D AW VF+ ++ ++V 
Sbjct: 261 AHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVV 320

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WNAMIGGLAM+G    A+ELF +M      P+  TF  VL AC H G +D G +    M
Sbjct: 321 LWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSM 380

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              +GI+P  EHYGC+ DLLGRAG L EAE V+  MPMEP+A+ W AL+ +C  H  V  
Sbjct: 381 CD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGV 439

Query: 484 GERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GER+GK L+E+EP               N   +D   +RK+M+ERG K   G S I+ NG
Sbjct: 440 GERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNG 499

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETAPKYHSE 588
           ++HEFR+GD  HPQ ++IY +L+ + ++L++ GY  ++SQVL D+D+EE K     YHSE
Sbjct: 500 LVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSE 559

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LA+AFG +NT     IR++KNLRVC DCH   KL+SK+++R+II+RDR R+H FR G C
Sbjct: 560 RLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVC 619

Query: 649 SCNDFW 654
           SCNDFW
Sbjct: 620 SCNDFW 625



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E A +VF  + +  +  W++++ AC+   E    + ++ +M+G   +P+     +V K
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLK 258

Query: 142 ACSITEADKEGVQVHAHVVKNGLC---GDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           AC+   A + G  VH  +   GL     +V ++++ + MY   GC+++A  + D     D
Sbjct: 259 ACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQD 318

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFN 254
           V+ WNA+I G    G  + A ELF+   D     N  ++  ++      GR +E +++F 
Sbjct: 319 VVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFR 378

Query: 255 EMNDKD----EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            M D         +  + D   + G  +EA  V  +M    ++P       ++++C
Sbjct: 379 SMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDM---PMEPHASQWGALMSSC 431



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           VF+ V   +V +WN+++     +    R + L+  M+ +   PN+ T+  V  AC+ T  
Sbjct: 310 VFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGR 369

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQI-LDDGSKSDVI 200
             EG ++   +  +G+           + Y C        G + +A  + LD   +    
Sbjct: 370 VDEGKEIFRSMCDHGI-------EPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHAS 422

Query: 201 CWNALIDGYLKCGDI----EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA---RKLF 253
            W AL+   L   ++       K+L +   D + G Y  + + +A  G +E+A   RK+ 
Sbjct: 423 QWGALMSSCLMHNNVGVGERVGKKLIELEPD-DGGRYVVLFNLYAVNGLWEDAKALRKMM 481

Query: 254 NEMNDKDE-----ITWSAII----DGYTKDGYYKEALEVFNEMQR 289
            E   K E     I W+ ++     G T+    ++   +  +M++
Sbjct: 482 EERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQ 526


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 336/586 (57%), Gaps = 20/586 (3%)

Query: 89   VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
            +F+ + K NV  +N ++R+ + ++     + ++  M G    P+ +TYP V KA S +E 
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 149  DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
               G+Q+HA VV+ GL  +V V +  I MY   GC+ +A ++LD+    DV+ WN+L+ G
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 209  YLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFAR--FGRFEEARKLFNEMNDKDEI 262
              + G  + A E+ K  +      + G+  +++              +++F ++ +K  +
Sbjct: 1202 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 1261

Query: 263  TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
            +W+ +I  Y  +    EA+++F +M+   + P    ++ VL AC  L AL  G  IH++V
Sbjct: 1262 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 1321

Query: 323  KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
             R  +  + +L  AL+DMYAKCG L+ A +VF+ MK ++V +W +MI    M+G+  DA+
Sbjct: 1322 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 1381

Query: 383  ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
             LF +MQ   + PD I F  VLSAC+HAG++D G      M +   I P +EH+ C+VDL
Sbjct: 1382 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 1441

Query: 443  LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--- 499
            LGRAG + EA   I  MPMEPN  VW ALL ACR +  +  G      L ++ P+     
Sbjct: 1442 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 1501

Query: 500  -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                       R +DV  +R +MK +GIK  PG S  +++  +H F  GD SHPQ K+IY
Sbjct: 1502 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 1561

Query: 549  LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
              L  ++ K+K  GY P +   L D++EE+KE     HSEKLAIAF  +NT PG+ IR+ 
Sbjct: 1562 EELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 1621

Query: 609  KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLRVC DCH A KLISK+  R+I +RD  R+HHF NG CSC D+W
Sbjct: 1622 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 236  MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
            ++  +A  G     R +F+E+  K+ + ++ +I  Y  +  Y +AL VF  M    I P 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 296  KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
             +   CVL A +    L  G+ IH  V R  + ++  +G  L+ MY KCG L  A +V +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 356  DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            +M  ++V +WN+++ G A +G+ DDA+E+  +M+   ++PD  T A +L A     + + 
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA-----VTNT 1240

Query: 416  GLQALTYMQQMYG--IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEA 470
             L  ++++++M+    +  +  +  ++ +       AEA ++   M    ++P+A    +
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 471  LLGACRKHGEVEFGERL 487
            +L AC     +  G R+
Sbjct: 1301 VLPACGDLSALLLGRRI 1317



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 137/304 (45%), Gaps = 15/304 (4%)

Query: 69   GTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
             +L+    N+   N     ++F  +   ++  WN ++   + ++ P   + ++ +M    
Sbjct: 1231 ASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 1290

Query: 129  SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
              P+  +  +V  AC    A   G ++H +VV+  L  ++ ++++ I MYA  GC+  AR
Sbjct: 1291 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 1350

Query: 189  QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG 244
            ++ D     DV+ W ++I  Y   G    A  LF   +D     ++ ++ +++S  +  G
Sbjct: 1351 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 1410

Query: 245  RFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
              +E R  F  M ++ +I      +  ++D   + G   EA     +M    ++P + V 
Sbjct: 1411 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM---PMEPNERVW 1467

Query: 300  SCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDMAWKVFEDMK 358
              +L+AC     +  G+   D + +  +C + +     L ++YAK GR +    V   MK
Sbjct: 1468 GALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMK 1525

Query: 359  MKEV 362
             K +
Sbjct: 1526 TKGI 1529



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 327  ICVD------AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            IC+D        LG  L+  YA CG       +F+++  K V  +N MI     +    D
Sbjct: 1050 ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 1109

Query: 381  AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
            A+ +F  M    + PD  T+ CVL A + +  +  G+Q    + ++ G+D  V     ++
Sbjct: 1110 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRV-GLDLNVFVGNGLI 1168

Query: 441  DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             + G+ G L EA  V+  MP   +   W +L+  C ++G+ +
Sbjct: 1169 SMYGKCGCLVEACRVLDZMPCR-DVVSWNSLVAGCARNGQFD 1209


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/657 (35%), Positives = 366/657 (55%), Gaps = 59/657 (8%)

Query: 56  ILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           ++K+G+ Q D  V   L+      R  +   A KVF  + + N   W  ++   ++    
Sbjct: 194 VVKTGYLQSDVCVGCGLIDMFVKGR-GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYA 252

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
              I L+ EM+    +P++FT   V  AC+  E    G Q+H+  +++GL  D  V    
Sbjct: 253 GEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312

Query: 175 IQMYA---CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI-EGAKELFK------- 223
           I MYA     G +  AR+I D     +V  W A+I GY++ G   E A +LF+       
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 224 -------STKDKNTGSY-------------------------NAMISGFARFGRFEEARK 251
                  S+  K   +                          N++IS +AR GR ++ARK
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            F+ + +K+ I+++ +ID Y K+   +EALE+FNE++   +    F  + +L+  AS+G 
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           + +G  IH  V ++ + ++  +  AL+ MY++CG ++ A++VFEDM+ + V +W ++I G
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A HG A  A+ELF KM  E +RP+ +T+  VLSAC+H G+++ G +    M   +G+ P
Sbjct: 553 FAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIP 612

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +EHY C+VD+LGR+G L+EA + I+SMP + +A VW   LGACR HG +E G+   K++
Sbjct: 613 RMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMI 672

Query: 492 LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           +E EP +               + D+V+ +RK MKE+ +    G S ++V   +H+F  G
Sbjct: 673 IEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVG 732

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SHP+  EIY  L+ +  K+K  GY PN   VL D++EE+KE     HSEK+A+AFG I
Sbjct: 733 DTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLI 792

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +T     IRV KNLR+C DCHSA K IS    R+IIVRD  R+HH ++G+CSCN++W
Sbjct: 793 STSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 49/376 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H+  ++ G   D  V   L+  +A  S   +   A K+F+ +   NVF W +++   
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 109 LE---HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           ++   ++E    + L+  M+     PN FT+ +  KAC+   A + G QV  H VK G  
Sbjct: 351 VQKGGYDE--EALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFS 408

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
               V +S I MYA  G ++ AR+  D   + ++I +N +ID Y K  + E A ELF   
Sbjct: 409 SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468

Query: 226 KDKNTGSY---------------------------------------NAMISGFARFGRF 246
           +D+  G+                                        NA+IS ++R G  
Sbjct: 469 EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNI 528

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A ++F +M D++ I+W++II G+ K G+  +ALE+F++M  + ++P       VL+AC
Sbjct: 529 ESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSAC 588

Query: 307 ASLGALDQGIWIH--DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           + +G +++G W H       + +         +VD+  + G L  A +    M  K +  
Sbjct: 589 SHVGLVNEG-WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADAL 647

Query: 364 TWNAMIGGLAMHGRAD 379
            W   +G   +HG  +
Sbjct: 648 VWRTFLGACRVHGNLE 663



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 195/448 (43%), Gaps = 48/448 (10%)

Query: 78  SRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
           S+   +E A  +F  +    ++  W++++     +N  +R +  + +M+     PN++ +
Sbjct: 112 SKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 171

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYA-CFGCVNKARQILDDG 194
               +ACS  E    G  +   VVK G L  DV V    I M+    G +  A ++ +  
Sbjct: 172 AAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKM 231

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARF------- 243
            + + + W  +I   ++ G    A +LF     S  + +  + + +IS  A         
Sbjct: 232 PERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQ 291

Query: 244 -------------------------------GRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                          G    ARK+F+++ D +  +W+A+I GY 
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYV 351

Query: 273 -KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            K GY +EAL++F  M    + P  F  S  L ACA+L AL  G  +  H  +       
Sbjct: 352 QKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVN 411

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +  +L+ MYA+ GR+D A K F+ +  K + ++N +I   A +  +++A+ELF +++ +
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            M     TFA +LS  A  G I +G Q    + +  G+         ++ +  R G +  
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIES 530

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHG 479
           A +V   M  + N   W +++    KHG
Sbjct: 531 AFQVFEDME-DRNVISWTSIITGFAKHG 557



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 166/409 (40%), Gaps = 80/409 (19%)

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + IS    MV   S P+  TY    K C  T +   G  VH  + ++ L           
Sbjct: 49  KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL----------- 97

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                               + D +  N+LI  Y KCG  E A  +F+            
Sbjct: 98  --------------------QLDSVTLNSLISLYSKCGQWEKATSIFQ------------ 125

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
            + G +R                 D I+WSA++  +  +     AL  F +M  +   P 
Sbjct: 126 -LMGSSR-----------------DLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 296 KFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALVDMYAKCGRLDM--AWK 352
           ++  +    AC++   +  G  I    VK   +  D  +G  L+DM+ K GR D+  A+K
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFK 226

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VFE M  +   TW  MI  L   G A +AI+LF +M      PDR T + V+SACA+  +
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA---GYLAEAEEVISSMPMEPNAAVWE 469
           +  G Q L      +G+  +     C++++  +    G +  A ++   + ++ N   W 
Sbjct: 287 LLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWT 344

Query: 470 ALL-GACRKHGEVEFGERL--GKILLEMEPQN-------RRCDDVAKMR 508
           A++ G  +K G  E    L  G IL  + P +       + C ++A +R
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALR 393



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G   +A+     M      P     S  L  C    + D G  +H+ + ++ + +D+V 
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 334 GTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             +L+ +Y+KCG+ + A  +F+ M   +++ +W+AM+   A +     A+  F  M    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRA-GYLA 450
             P+   FA    AC+ A  +  G     ++ +   +  +V   GC ++D+  +  G L 
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDV-CVGCGLIDMFVKGRGDLV 222

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            A +V   MP E NA  W  ++    + G    GE +  + LEM
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMITRLMQFGYA--GEAI-DLFLEM 262


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 45/515 (8%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            VHA   ++G   D HV+S  + MYA  G V   R    +    DV+C  A++      G
Sbjct: 145 SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGG 204

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D++                                AR+LF+ M  +D + W+A++ GY +
Sbjct: 205 DVD-------------------------------TARELFDGMPQRDHVAWNAMLTGYVR 233

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G  +EAL +F+EMQ+  +   +  L  VL ACA +GAL++G+W+H +V    + V   L
Sbjct: 234 VGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTL 293

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           GTALVDMY+KCG + M+ +VFE M+ + ++TW + + GLAM+G  ++ +ELF +M+   M
Sbjct: 294 GTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGM 353

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            P+ +TF  VL  C+ AG+++ G      M+  + ++P +EHYGC+VDL GRAG L +A 
Sbjct: 354 EPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAV 413

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC------------ 501
           + I+SMP+EP+  VW ALL A R H  V+ G+     L E+E +N               
Sbjct: 414 DFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESH 473

Query: 502 --DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
               V+K+R +MK +G+K  PG S I+V+G +HEF  G  SHP+ K+I  ML ++  +L+
Sbjct: 474 NWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLR 533

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
           ++GY+ N+ +VLFDI+EEEKE A   HSEKLA+AFG I       IR++KNLRVC+DCH 
Sbjct: 534 LQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHD 593

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            TKLISKVF R+I++RDR R+HHF++G CSC D+W
Sbjct: 594 YTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/567 (40%), Positives = 341/567 (60%), Gaps = 43/567 (7%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF---GC 183
           + S+ N      + + CS  E   E  Q+H  ++K GL  D  + +S +  +      G 
Sbjct: 12  LSSESNAAQTLHLLQRCSNME---ELRQIHGQMLKTGLILD-EIPASKLLAFCASPNSGS 67

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----TKDKNTGSYNAMISG 239
           +  AR + D   + +   WN +I GY    + E A  L+      +   N  ++  ++  
Sbjct: 68  LAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA 127

Query: 240 FARFGRFEEARKLFN---EMNDKDEI-TWSAIIDGYTKDGYYK--------------EAL 281
            +     EE +++     +M    EI T +++++ Y+K G  K              EAL
Sbjct: 128 CSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEAL 187

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +F+ MQ   IK     L   L ACA LG LDQG WIH ++K++ I +D +LG  L+DMY
Sbjct: 188 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 247

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG L+ A +VF  M+ K V  W AMI G A+HGR  +A+E F KMQ   + P+++TF 
Sbjct: 248 AKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFT 307

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +L+AC+HAG++         M++++G  P +EHYGC+VDLLGRAG L EAEE+I +MP+
Sbjct: 308 GILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV 367

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +PNAA+W ALL AC  HG +E G+++GKIL++++P +                 +  A++
Sbjct: 368 KPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARV 427

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ MKE+G+   PG S+I VNG  HEF  GD SHPQ+KEI  ML++I+E+L+ EGY P  
Sbjct: 428 RRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKL 487

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
             +L D++++EKETA  +HSEKLA+ FG I+T PG TIR++KNLRVCEDCH+  KLISKV
Sbjct: 488 GDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKV 547

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + R+I++RDR R+H F++G C+C D+W
Sbjct: 548 YAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 92/414 (22%)

Query: 25  PTSEFSQKT----ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           PTS+ S ++     L +L  +C ++ + L+Q H  +LK+G   D   +  L+   A+   
Sbjct: 8   PTSQLSSESNAAQTLHLLQ-RC-SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS 65

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            +   A  VF+ + +PN F+WN+++R      EP   + LY  M+      N +T+P + 
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           KACS   A +E  Q+HAH++K G   +++  +S + +Y+  G +  AR + D   + D  
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTE 185

Query: 201 CWN-----------------------------------------------------ALID 207
             N                                                      LID
Sbjct: 186 ALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLID 245

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KCGD+E A E+F+  ++K    + AMISG+A  GR  E                   
Sbjct: 246 MYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE------------------- 286

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
                       ALE F +MQ   ++P +   + +L AC+  G + +   + + ++R   
Sbjct: 287 ------------ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 334

Query: 328 CVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRAD 379
              ++     +VD+  + G L  A ++ E+M +K     W A++    +HG  +
Sbjct: 335 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 388


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 372/673 (55%), Gaps = 60/673 (8%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96
           ++++  H +   LKQ HA +L  G     ++   L+  HA+S F +   A +VF+ + +P
Sbjct: 27  LIDSATHKA--QLKQIHARLLVLGLQFSGFLITKLI--HASSSFGDITFARQVFDDLPRP 82

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
            +F WN+++R    +N     + +YS M      P+ FT+P + KACS     + G  VH
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGD 214
           A V + G   DV V++  I +YA    +  AR + +     +  ++ W A++  Y + G+
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 215 IEGAKELFKSTKD-----------------------KNTGSYNAMI-------------- 237
              A E+F   +                        K   S +A +              
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 238 --SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
             + +A+ G+   A+ LF++M   + I W+A+I GY K+GY +EA+++F+EM    ++P 
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
              ++  ++ACA +G+L+Q   ++++V R+    D  + +AL+DM+AKCG ++ A  VF+
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
               ++V  W+AMI G  +HGRA +AI L+  M+R  + P+ +TF  +L AC H+GM+  
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVRE 442

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G      M   + I+P+ +HY C++DLLGRAG+L +A EVI  MP++P   VW ALL AC
Sbjct: 443 GWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501

Query: 476 RKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPG 521
           +KH  VE GE   + L  ++P N              R  D VA++R  MKE+G+  + G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S ++V G +  FR GD SHP+ +EI   ++ I  +LK  G+  N    L D+++EE E 
Sbjct: 562 CSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEE 621

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
               HSE++AIA+G I+T  G  +R+ KNLR C +CH+ATKLISK+  R+I+VRD  R+H
Sbjct: 622 TLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFH 681

Query: 642 HFRNGKCSCNDFW 654
           HF++G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 358/660 (54%), Gaps = 59/660 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L  AH+++   G   + +V   +V  +   +F+  ELA KVF+ + + +  +WN+++   
Sbjct: 134 LLHAHSIV--DGVASNLFVGSAIVDLYF--KFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             ++     I ++ +M+ V    +  T  TV  A +  +  + G+ +     K GL  DV
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKS 224
           +V +  I +Y+  G   K R + D   + D+I +NA+I GY    + E A    +EL  S
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 225 TKDKNTGSY-----------------------------------NAMISGFARFGRFEEA 249
            +  N+ +                                     A+ + + R    + A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF+E  +K   +W+A+I GYT++G    A+ +F EM   ++ P    ++ +L+ACA L
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQL 428

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G W+H  +K   +  +  + TALVDMYAKCG +  A ++F+ M  K V TWNAMI
Sbjct: 429 GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  +HG   +A++LF++M +  + P  +TF  +L AC+H+G++  G +    M   YG 
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  EHY C+VD+LGRAG L  A E I  MP+EP  AVW ALLGAC  H   E      K
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L +++P+N              R     A +R+++K+R +   PG ++I+++   + F 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS-SQVLFDIDEEEKETAPKYHSEKLAIAF 594
           +GD SHPQ   I+ ML+K+  K++  GY   + +  L D+++EEKE     HSEKLAIAF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG  IR+IKNLRVC DCH+ATK ISK+ +R I+VRD  R+HHF+NG CSC D+W
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 229/517 (44%), Gaps = 57/517 (11%)

Query: 22  TNIPTSEF-SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSR 79
           TN  TS    Q+  L +LN    T+   L Q  A ++  G    HY   ++ K  H    
Sbjct: 4   TNTATSAIRGQRFFLTLLNNA--TTLSQLLQIQAQLILHG---IHYDLSSITKLTHKFFD 58

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPT 138
                   ++FN V KP++F++N ++R   ++  P   I LY+ +    + +P+ FTY  
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAF 118

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              A S  E ++ GV +HAH + +G+  ++ V S+ + +Y  F     AR++ D   + D
Sbjct: 119 AISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD 178

Query: 199 VICWNALIDGYLKCGDIEGAKELF------------------------------------ 222
            + WN +I G+ +    E +  +F                                    
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 223 -KSTKDKNTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
             S K  ++  Y    +IS +++ G+  + R LF++++  D I+++A+I GYT +   + 
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+ +F E+     +     L  ++        L     I +   +  I +   + TAL  
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTT 358

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           +Y +   +  A ++F++   K + +WNAMI G   +G  D AI LF +M   ++ P+ +T
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVT 417

Query: 400 FACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
              +LSACA  G +  G  +  L   +++   +  V     +VD+  + G + EA ++  
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSERL---ESNVYVSTALVDMYAKCGSIVEARQLFD 474

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            M ++ N   W A++     HG    G+   K+  EM
Sbjct: 475 LM-VDKNVVTWNAMITGYGLHGH---GKEALKLFYEM 507


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/492 (44%), Positives = 304/492 (61%), Gaps = 14/492 (2%)

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAM 236
           MYA  G V+ AR   D+    DV   N ++  Y+   ++  A+++F     ++  S+N M
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           I G+A  G    AR++F+   D+D  +WS++I  Y K    KEALE++ EM    I P  
Sbjct: 61  IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
             L  V++AC+ LGAL  G  +H  V+ N I +D  LGTAL+DMYAKCG ++ A +VF+ 
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR 180

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           M  K+V TW++MI GLA HG   +++ LF KM  E M+P+ +TF  VL AC H G++  G
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 240

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
            +    M +++GI+P VEHYGC+VDLLGR+G++ EA ++I SM  EP+  +W ALLGACR
Sbjct: 241 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 300

Query: 477 KHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGS 522
            H  VE  E     L  ++P              Q    + VA+MRK ++   I+  PG 
Sbjct: 301 IHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGR 360

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+ +  IHEF +GD  HP+ KEIY +L++++++LK  GY P +  VL DIDE+ KE +
Sbjct: 361 SSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERS 420

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAF  + T   +TIR+ KNLR CEDCHSA KLIS V+ R +IVRDR R+HH
Sbjct: 421 LAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHH 480

Query: 643 FRNGKCSCNDFW 654
           F  G+CSC D+W
Sbjct: 481 FSEGQCSCKDYW 492



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 12/231 (5%)

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
           LA ++F+     + F W+S++ A  +       + L+ EM      P+  T  +V  ACS
Sbjct: 72  LAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACS 131

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A   G +VH  V  N +  D+ + ++ I MYA  G +  A+++ D   + DV  W++
Sbjct: 132 DLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSS 191

Query: 205 LIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G    G    +  LF     +    N  ++  ++      G   E +K F  MN+  
Sbjct: 192 MIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVH 251

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            I      +  ++D   + G+ +EA ++   M     +P   +   +L AC
Sbjct: 252 GIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMT---FEPDTIIWRALLGAC 299



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E A +VF+ + + +V  W+S++     H      +SL+S+M+    KPN  T+  V  
Sbjct: 170 DIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLI 229

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDG 194
           AC+      EG +    +       +VH     ++ Y C        G V +ARQ++   
Sbjct: 230 ACTHVGLVSEGKKYFRSM------NEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSM 283

Query: 195 S-KSDVICWNALIDGYLKCGDIEGAKE 220
           + + D I W AL+       ++E A+E
Sbjct: 284 TFEPDTIIWRALLGACRIHKNVEIAEE 310


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 372/673 (55%), Gaps = 60/673 (8%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96
           ++++  H +   LKQ HA +L  G     ++   L+  HA+S F +   A +VF+ + +P
Sbjct: 27  LIDSATHKA--QLKQIHARLLVLGLQFSGFLITKLI--HASSSFGDITFARQVFDDLPRP 82

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
            +F WN+++R    +N     + +YS M      P+ FT+P + KACS     + G  VH
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGD 214
           A V + G   DV V++  I +YA    +  AR + +     +  ++ W A++  Y + G+
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 215 IEGAKELFKSTKD-----------------------KNTGSYNAMI-------------- 237
              A E+F   +                        K   S +A +              
Sbjct: 203 PMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 238 --SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
             + +A+ G+   A+ LF++M   + I W+A+I GY K+GY +EA+++F+EM    ++P 
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
              ++  ++ACA +G+L+Q   ++++V R+    D  + +AL+DM+AKCG ++ A  VF+
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
               ++V  W+AMI G  +HGRA +AI L+  M+R  + P+ +TF  +L AC H+GM+  
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVRE 442

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G      M   + I+P+ +HY C++DLLGRAG+L +A EVI  MP++P   VW ALL AC
Sbjct: 443 GWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501

Query: 476 RKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPG 521
           +KH  VE GE   + L  ++P N              R  D VA++R  MKE+G+  + G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S ++V G +  FR GD SHP+ +EI   ++ I  +LK  G+  N    L D+++EE E 
Sbjct: 562 CSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEE 621

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
               HSE++AIA+G I+T  G  +R+ KNLR C +CH+ATKLISK+  R+I+VRD  R+H
Sbjct: 622 TLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFH 681

Query: 642 HFRNGKCSCNDFW 654
           HF++G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 358/660 (54%), Gaps = 59/660 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L  AH+++   G   + +V   +V  +   +F+  ELA KVF+ + + +  +WN+++   
Sbjct: 134 LLHAHSIV--DGVASNLFVGSAIVDLYF--KFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             ++     I ++ +M+ V    +  T  TV  A +  +  + G+ +     K GL  DV
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKS 224
           +V +  I +Y+  G   K R + D   + D+I +NA+I GY    + E A    +EL  S
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 225 TKDKNTGSY-----------------------------------NAMISGFARFGRFEEA 249
            +  N+ +                                     A+ + + R    + A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF+E  +K   +W+A+I GYT++G    A+ +F EM   ++ P    ++ +L+ACA L
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQL 428

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G W+H  +K   +  +  + TALVDMYAKCG +  A ++F+ M  K V TWNAMI
Sbjct: 429 GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  +HG   +A++LF++M +  + P  +TF  +L AC+H+G++  G +    M   YG 
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  EHY C+VD+LGRAG L  A E I  MP+EP  AVW ALLGAC  H   E      K
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L +++P+N              R     A +R+++K+R +   PG ++I+++   + F 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS-SQVLFDIDEEEKETAPKYHSEKLAIAF 594
           +GD SHPQ   I+ ML+K+  K++  GY   + +  L D+++EEKE     HSEKLAIAF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG  IR+IKNLRVC DCH+ATK ISK+ +R I+VRD  R+HHF+NG CSC D+W
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 229/517 (44%), Gaps = 57/517 (11%)

Query: 22  TNIPTSEF-SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHANSR 79
           TN  TS    Q+  L +LN    T+   L Q  A ++  G    HY   ++ K  H    
Sbjct: 4   TNTATSAIRGQRFFLTLLNNA--TTLSQLLQIQAQLILHG---IHYDLSSITKLTHKFFD 58

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPT 138
                   ++FN V KP++F++N ++R   ++  P   I LY+ +    + +P+ FTY  
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAF 118

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              A S  E ++ GV +HAH + +G+  ++ V S+ + +Y  F     AR++ D   + D
Sbjct: 119 AISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD 178

Query: 199 VICWNALIDGYLKCGDIEGAKELF------------------------------------ 222
            + WN +I G+ +    E +  +F                                    
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 223 -KSTKDKNTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
             S K  ++  Y    +IS +++ G+  + R LF++++  D I+++A+I GYT +   + 
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+ +F E+     +     L  ++        L     I +   +  I +   + TAL  
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTT 358

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           +Y +   +  A ++F++   K + +WNAMI G   +G  D AI LF +M   ++ P+ +T
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVT 417

Query: 400 FACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
              +LSACA  G +  G  +  L   +++   +  V     +VD+  + G + EA ++  
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSERL---ESNVYVSTALVDMYAKCGSIVEARQLFD 474

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            M ++ N   W A++     HG    G+   K+  EM
Sbjct: 475 LM-VDKNVVTWNAMITGYGLHGH---GKEALKLFYEM 507


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 366/660 (55%), Gaps = 58/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H    K G   + +V+ +L+  H  SRF    +A  +F+ +   ++  WN+++   +
Sbjct: 235 RRIHCWAFKLGFQWNVFVAASLI--HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + +  EM     K N  T  ++   C         + +H +V+K+GL  D+ 
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ I MYA FG +  AR+       +DV+ WN++I  Y +  D   A   F       
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 223 ----------------KSTKDKNTGSY-----------------NAMISGFARFGRFEEA 249
                           +S   KN+ S                  NA++  +A+ G  + A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACAS 308
            K+F  +  KD I+W+ +I GY ++G   EA+EV+  M+  K I P +     +L A A 
Sbjct: 473 HKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GAL QG+ IH  V + ++ +D  + T L+D+Y KCGRL  A  +F  +  +   TWNA+
Sbjct: 533 VGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 592

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I    +HG A+  ++LF +M  E ++PD +TF  +LSAC+H+G ++ G      MQ+ YG
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YG 651

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDLLGRAGYL  A   I  MP++P+A++W ALLGACR HG +E G+   
Sbjct: 652 IKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 711

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L E++ +N               + + V K+R L +ERG+K  PG S I+VN  +  F
Sbjct: 712 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 771

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            TG+ SHP+ KEIY  L+ +  K+K  GY P+ S VL D++E+EKE     HSE+LAIAF
Sbjct: 772 YTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 831

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T P + IR+ KNLRVC DCH+ATK IS++ +R+I+VRD  R+HHF++G CSC D+W
Sbjct: 832 GIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 262/543 (48%), Gaps = 65/543 (11%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFS------QKTILD---ILNTKCHTSWQHLKQ 51
           + ++ T+  LP   +P ++ +    + +FS      Q   +D   + ++   T +   K 
Sbjct: 80  LKSRHTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFA--KC 137

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            HA+++ +G  Q  ++S  LV  +AN    +  L+   F+ + + +V+ WNS++ A + +
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 112 NEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                 I  + +++ V   +P+ +T+P V KAC       +G ++H    K G   +V V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRRIHCWAFKLGFQWNVFV 252

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------------IEGA 218
            +S I MY+ FG    AR + DD    D+  WNA+I G ++ G+            +EG 
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 219 KELFKST----------KDKNTGSY-----------------NAMISGFARFGRFEEARK 251
           K  F +            D +T                    NA+I+ +A+FG  E+ARK
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            F +M   D ++W++II  Y ++     A   F +MQ +  +P    L  + +  A    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 312 LDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 +H  + +R  +  D V+G A+VDMYAK G LD A KVFE + +K+V +WN +I 
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLIT 492

Query: 371 GLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           G A +G A +AIE++  M+  +++ P++ T+  +L A AH G + +G++    + +   +
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NL 551

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE-----FG 484
             +V    C++D+ G+ G L +A  +   +P E ++  W A++     HG  E     FG
Sbjct: 552 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKLFG 610

Query: 485 ERL 487
           E L
Sbjct: 611 EML 613



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 174/371 (46%), Gaps = 32/371 (8%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKP 294
           +++ +A  G    +R  F+++  KD  TW+++I  Y  +G++ EA+  F ++    +I+P
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
             +    VL AC   G L  G  IH    +     +  +  +L+ MY++ G   +A  +F
Sbjct: 217 DFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           +DM  +++ +WNAMI GL  +G A  A+++  +M+ E ++ + +T   +L  C   G I 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             +    Y+ + +G++ ++     ++++  + G L +A +    M +  +   W +++ A
Sbjct: 334 TAMLIHLYVIK-HGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391

Query: 475 CRK-------HGEV------EFGERLGKI--LLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
             +       HG         F   L  +  L  +  Q+R C +   +   +  RG    
Sbjct: 392 YEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLME 451

Query: 520 P---GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN--SSQVL--F 572
               G++++D+   +      D +H +V EI L+   I     + GY+ N  +S+ +  +
Sbjct: 452 DVVIGNAVVDMYAKLGLL---DSAH-KVFEIILVKDVISWNTLITGYAQNGLASEAIEVY 507

Query: 573 DIDEEEKETAP 583
            + EE KE  P
Sbjct: 508 KMMEECKEIIP 518


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 330/559 (59%), Gaps = 48/559 (8%)

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
           P   + L+  ++   + P+   Y   F +C+         Q+HAH  K GL         
Sbjct: 56  PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVA------- 108

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY 233
                                S   V C   L+  Y  CG +  A+ +F    D +  ++
Sbjct: 109 ---------------------SHRRVRC--RLVHAYAVCGMLPHARRVFDGGTDNDMVAW 145

Query: 234 NAMISGFARFGRFEEA-RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDK 291
           N ++ G+A+ G  E+  R  F  M  +D ++W+ ++     +G Y EA+ VF EM    +
Sbjct: 146 NCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQE 205

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            +P +  L  V++A A LGAL  G+W H +V R  I V+  L +AL++MY+KCG ++ A 
Sbjct: 206 CQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAV 265

Query: 352 KVFEDMKMKEVF-TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            VF+++  K    TWNAM+ G   +G ++ A+ELF +M+  ++ P++ITF  VL+AC+H 
Sbjct: 266 YVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHG 325

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G+++ G++    M + YGI+P++ HYGC+VDL  RAG   +AEE+I +MPMEP+A++ +A
Sbjct: 326 GLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKA 385

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI 516
           LLGACR H  +E G+++G  L+E    +                   V K+RKLM +RG+
Sbjct: 386 LLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGV 445

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
              PGSS +++NGVIHEF +GD SH + ++IY ML +I ++LK  GY+P++SQVL DID+
Sbjct: 446 LKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDD 505

Query: 577 EE-KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           E+ KE++   HSEKLAIAFG I+T PG  IRV+ NLR+C DCH+A KLISK++ R IIVR
Sbjct: 506 EDVKESSLALHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVR 565

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D  R+HHFR G CSC D+W
Sbjct: 566 DANRFHHFRKGSCSCGDYW 584



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           WN+VL  C+ + E    I+++ EM+   + +P++ T  +V  A +   A   G+  HA+V
Sbjct: 177 WNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYV 236

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGA 218
            +  +  +  + S+ I MY+  G +  A  + D+ G K  +  WNA++ G+   G  E A
Sbjct: 237 FRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERA 296

Query: 219 KELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIID 269
            ELF   +      N  ++N +++  +  G  EE  K F  M+     + D   +  ++D
Sbjct: 297 LELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVD 356

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
            + + G +++A E+   M    ++P   +L  +L AC +   L+ G
Sbjct: 357 LFCRAGMFEKAEEIIQTM---PMEPDASMLKALLGACRTHKNLELG 399



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KP 96
           L    H  W     AHA + +     +  +S  L+  ++   F   E A+ VF++V  K 
Sbjct: 223 LGALAHGLW-----AHAYVFRKCIEVEEKLSSALINMYSKCGF--IEGAVYVFDNVGGKR 275

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           ++  WN++L     +    R + L++ M      PNK T+ TV  ACS     +EG++  
Sbjct: 276 SLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYF 335

Query: 157 AHVVK-NGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
             + +  G+  D+      + ++   G   KA +I+
Sbjct: 336 QRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEII 371


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/654 (36%), Positives = 363/654 (55%), Gaps = 82/654 (12%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P + S  N   ++F+++  L +L  +C  S +  KQ HA ILK G F D +    LV   
Sbjct: 19  PPQSSELN---AKFNEQGWLSLLK-RC-KSMEEFKQVHAHILKLGLFYDSFCGSNLVASC 73

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A SR+ + E A  +F+ + +P  F +N+++R  +   +    + LY EM+    +P+ FT
Sbjct: 74  ALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFT 133

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           YP V KACS+  A KEGVQ+HA           HV  +G+++                  
Sbjct: 134 YPFVLKACSLLVALKEGVQIHA-----------HVFKAGLEV------------------ 164

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
             DV   N LI  Y KC                               G  E A  +F +
Sbjct: 165 --DVFVQNGLISMYGKC-------------------------------GAIEHAGVVFEQ 191

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQ 314
           M++K   +WS+II  +     + E L +  +M  + + +  + +L   L+AC  LG+ + 
Sbjct: 192 MDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNL 251

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  + RN   ++ V+ T+L+DMY KCG L+    VF++M  K  +++  MI GLA+
Sbjct: 252 GRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAI 311

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HGR  +A+ +F  M  E + PD + +  VLSAC+HAG+++ GLQ    MQ  + I P ++
Sbjct: 312 HGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQ 371

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE-------RL 487
           HYGC+VDL+GRAG L EA ++I SMP++PN  VW +LL AC+ H  +E GE       RL
Sbjct: 372 HYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRL 431

Query: 488 GK-------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
            K       +L  M  + ++  +VA++R  M E+ +   PG S+++ N  +++F + D S
Sbjct: 432 NKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
            P  + IY M++++  +LK EGY+P+ SQVL D+DE+EK    K+HS+KLAIAF  I T 
Sbjct: 492 QPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            G+ IR+ +NLR+C DCH+ TK IS +++R+I VRDR R+HHF++G CSC D+W
Sbjct: 552 EGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 349/626 (55%), Gaps = 57/626 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + N+  W  ++    +       I L+ +M      P++FTY +V  AC+ 
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICW 202
                 G Q+H+ V++ GL  DV V  S + MYA     G V+ +R++ +   + +V+ W
Sbjct: 262 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 321

Query: 203 NALIDGYLKCGDIEG-AKELF----------------------KSTKDKNTG----SY-- 233
            A+I  Y++ G+ +  A ELF                       +  D  TG    SY  
Sbjct: 322 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 381

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                      N++IS +AR GR E+ARK F+ + +K+ ++++AI+DGY K+   +EA  
Sbjct: 382 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 441

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +FNE+    I    F  + +L+  AS+GA+ +G  IH  + +     +  +  AL+ MY+
Sbjct: 442 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 501

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG ++ A++VF +M+ + V +W +MI G A HG A  A+E+F KM     +P+ IT+  
Sbjct: 502 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 561

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC+H GMI  G +    M + +GI P +EHY C+VDLLGR+G L EA E I+SMP+ 
Sbjct: 562 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 621

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
            +A VW  LLGACR HG  E G    +++LE EP +               +  DV K+R
Sbjct: 622 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 681

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MKER +    G S I+V   +H F  G+ SHPQ  +IY  L ++  K+K  GY P++ 
Sbjct: 682 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 741

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL DI+EE+KE     HSEK+A+AFG I+T     IR+ KNLRVC DCH+A K IS   
Sbjct: 742 FVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMAT 801

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+I+VRD  R+HH +NG CSCND+W
Sbjct: 802 GREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 187/405 (46%), Gaps = 48/405 (11%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M   ++ P+  TY  + K+C      + G  VH  ++++GL  D  V ++ I +Y+  G 
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 184 VNKARQILDD-GSKSDVICWNALIDGY----------------LKCGDIEGA---KELFK 223
              AR I +  G+K D++ W+A++  +                L+ G          + +
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 224 STKDKNTGSYNAMISGF-ARFGRFE---------------------EARKLFNEMNDKDE 261
           +  + N      +I GF  + G  E                      A K+F++M +++ 
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +TW+ +I  + + G  ++A+++F +M+     P +F  S VL+AC  LG L  G  +H  
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274

Query: 322 VKRNSICVDAVLGTALVDMYAKC---GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           V R  + +D  +G +LVDMYAKC   G +D + KVFE M    V +W A+I      G  
Sbjct: 275 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 334

Query: 379 D-DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           D +AIELF KM    +RP+  +F+ VL AC +      G Q  +Y  ++ GI        
Sbjct: 335 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL-GIASVNCVGN 393

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            ++ +  R+G + +A +    +  E N   + A++    K+ + E
Sbjct: 394 SLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKNLKSE 437



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 226/501 (45%), Gaps = 64/501 (12%)

Query: 33  TILDILNTKC--HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           T   IL   C    ++Q  K  H  +++SG   D  V  TL+  +  S+  + E A  +F
Sbjct: 45  TTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLY--SKCGDTETARLIF 102

Query: 91  NSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
             + +K ++  W++++     ++  W+ I  + +M+ +   PN++ +  V +ACS     
Sbjct: 103 EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYA 162

Query: 150 KEGVQVHAHVVKNG-LCGDVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALID 207
             G  ++  VVK G L  DV V    I M+    G +  A ++ D   + +++ W  +I 
Sbjct: 163 WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMIT 222

Query: 208 GYLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARFGRF----------------- 246
            + + G    A +LF     S    +  +Y++++S     G                   
Sbjct: 223 RFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL 282

Query: 247 ---------------------EEARKLFNEMNDKDEITWSAIIDGYTKDGYY-KEALEVF 284
                                +++RK+F +M + + ++W+AII  Y + G   KEA+E+F
Sbjct: 283 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 342

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M    I+P  F  S VL AC +L     G  ++ +  +  I     +G +L+ MYA+ 
Sbjct: 343 CKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 402

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           GR++ A K F+ +  K + ++NA++ G A + ++++A  LF ++    +     TFA +L
Sbjct: 403 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 462

Query: 405 SACAHAGMIDRGLQALTYMQQMYG--IDPEVEHYGCI----VDLLGRAGYLAEAEEVISS 458
           S  A  G + +G       +Q++G  +    +   CI    + +  R G +  A +V + 
Sbjct: 463 SGAASIGAMGKG-------EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515

Query: 459 MPMEPNAAVWEALLGACRKHG 479
           M  + N   W +++    KHG
Sbjct: 516 ME-DRNVISWTSMITGFAKHG 535



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 14/275 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q ++  +K G    + V  +L+  +A S     E A K F+ + + N+  +N+++    
Sbjct: 374 EQVYSYAVKLGIASVNCVGNSLISMYARS--GRMEDARKAFDILFEKNLVSYNAIVDGYA 431

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ +      L++E+       + FT+ ++    +   A  +G Q+H  ++K G   +  
Sbjct: 432 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 491

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           + ++ I MY+  G +  A Q+ ++    +VI W ++I G+ K G    A E+F    ++ 
Sbjct: 492 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 551

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  +Y A++S  +  G   E +K FN M  +  I      ++ ++D   + G   EA
Sbjct: 552 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 611

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +E  N M    +     V   +L AC   G  + G
Sbjct: 612 MEFINSM---PLMADALVWRTLLGACRVHGNTELG 643



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G    A    + M +    P     S +L +C        G  +H  + ++ + +D+V+ 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             L+ +Y+KCG  + A  +FE M  K ++ +W+AM+   A +     AI  F  M     
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGR-AGYLAE 451
            P+   FA V+ AC++A     G     ++ +   ++ +V   GC ++D+  + +G L  
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 201

Query: 452 AEEVISSMPMEPNAAVWEALL 472
           A +V   MP E N   W  ++
Sbjct: 202 AYKVFDKMP-ERNLVTWTLMI 221


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 334/586 (56%), Gaps = 20/586 (3%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ + K NV  +N ++R+ + ++     + ++  M G    P+ +TYP V KA S +E 
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
              G+Q+HA VV+ GL  +V V +  I MY   GC+ +A ++LD     DV+ WN+L+ G
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 209 YLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFAR--FGRFEEARKLFNEMNDKDEI 262
             + G  + A E+ K  +      + G+  +++              +++F ++ +K  +
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 272

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+ +I  Y  +    EA+++F +M+   + P    ++ VL AC  L AL  G  IH++V
Sbjct: 273 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 332

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            R  +  + +L  AL+DMYAKCG L+ A +VF+ MK ++V +W +MI    M+G+  DA+
Sbjct: 333 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAV 392

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            LF +MQ   + PD I F  VLSAC+HAG++D G      M +   I P +EH+ C+VDL
Sbjct: 393 SLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDL 452

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--- 499
           LGRAG + EA   I  MPMEPN  VW ALL ACR +  +  G      L ++ P+     
Sbjct: 453 LGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYY 512

Query: 500 -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                      R +DV  +R +MK +GIK  PG S  +++  +H F  GD SHPQ K+IY
Sbjct: 513 VLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 572

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
             L   + K+K  GY P +   L D++EE+KE     HSEKLAIAF  +NT PG+ IR+ 
Sbjct: 573 EELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRIT 632

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLRVC DCH A KLISK+  R+I +RD  R+HHF NG CSC D+W
Sbjct: 633 KNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 10/257 (3%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  +A  G     R +F+E+  K+ + ++ +I  Y  +  Y +AL VF  M    I P 
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            +   CVL A +    L  G+ IH  V R  + ++  +G  L+ MY KCG L  A +V +
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M  ++V +WN+++ G A +G+ DDA+E+  +M+   ++PD  T A +L A     + + 
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA-----VTNT 251

Query: 416 GLQALTYMQQMYG--IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEA 470
            L  ++++++M+    +  +  +  ++ +       AEA ++   M    ++P+A    +
Sbjct: 252 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311

Query: 471 LLGACRKHGEVEFGERL 487
           +L AC     +  G R+
Sbjct: 312 VLPACGDLSALLLGRRI 328



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 137/304 (45%), Gaps = 15/304 (4%)

Query: 69  GTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
            +L+    N+   N     ++F  +   ++  WN ++   + ++ P   + ++ +M    
Sbjct: 242 ASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 301

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+  +  +V  AC    A   G ++H +VV+  L  ++ ++++ I MYA  GC+  AR
Sbjct: 302 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 361

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG 244
           ++ D     DV+ W ++I  Y   G    A  LF   +D     ++ ++ +++S  +  G
Sbjct: 362 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 421

Query: 245 RFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
             +E R  F  M ++ +I      +  ++D   + G   EA     +M    ++P + V 
Sbjct: 422 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM---PMEPNERVW 478

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDMAWKVFEDMK 358
             +L+AC     +  G+   D + +  +C + +     L ++YAK GR +    V   MK
Sbjct: 479 GALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMK 536

Query: 359 MKEV 362
            K +
Sbjct: 537 TKGI 540



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 325 NSICVD------AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           + IC+D        LG  L+  YA CG       +F+++  K V  +N MI     +   
Sbjct: 59  SKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLY 118

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            DA+ +F  M    + PD  T+ CVL A + +  +  G+Q    + ++ G+D  V     
Sbjct: 119 SDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRV-GLDLNVFVGNG 177

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           ++ + G+ G L EA  V+  MP   +   W +L+  C ++G+ +
Sbjct: 178 LISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQFD 220


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 365/660 (55%), Gaps = 57/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  +LK G   D YV+ +L+  H  SRF   E+A KVF  +   +V  WN+++    
Sbjct: 167 EKMHCWVLKMGFEHDVYVAASLI--HLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + +   M   + K +  T  ++   C+ +     GV VH +V+K+GL  DV 
Sbjct: 225 QNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVF 284

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK------ 223
           V ++ I MY+ FG +  A+++ D     D++ WN++I  Y +  D   A   FK      
Sbjct: 285 VSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG 344

Query: 224 ----------------STKDKNTGSY------------------NAMISGFARFGRFEEA 249
                              D+  G                    NA+++ +A+ G  + A
Sbjct: 345 MRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCA 404

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACAS 308
           R +F ++  +D I+W+ +I GY ++G   EA++ +N M+  + I P +     +L A + 
Sbjct: 405 RAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSH 464

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GAL QG+ IH  + +N + +D  + T L+DMY KCGRL+ A  +F ++  +    WNA+
Sbjct: 465 VGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAI 524

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I  L +HG  + A++LF  M+ + ++ D ITF  +LSAC+H+G++D        MQ+ Y 
Sbjct: 525 ISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYR 584

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDL GRAGYL +A  ++S+MP++ +A++W  LL ACR HG  E G    
Sbjct: 585 IKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFAS 644

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             LLE++ +N               + +   K+R L ++RG++  PG S + V  V+  F
Sbjct: 645 DRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVF 704

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             G+ SHPQ  EIY  L+ +  K+K  GY P+ S VL D++E+EKE     HSE+LAI F
Sbjct: 705 YAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVF 764

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T P + IR+ KNLRVC DCH+ATK ISK+ +R+IIVRD  R+HHF++G CSC D+W
Sbjct: 765 GIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 242/499 (48%), Gaps = 54/499 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA++L  G  QD  +   LV  +A     +  L+   F  + + N+F WNS++ A +
Sbjct: 68  KQLHALLLVLGKAQDVVLLTQLVTLYAT--LGDLSLSSTTFKHIQRKNIFSWNSMVSAYV 125

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                   +   +E++ +   +P+ +T+P V KAC ++ AD E  ++H  V+K G   DV
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC-LSLADGE--KMHCWVLKMGFEHDV 182

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-- 226
           +V +S I +Y+ FG V  A ++  D    DV  WNA+I G+ + G++  A  +    K  
Sbjct: 183 YVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTE 242

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                + +    NA+I+ +++FGR ++A
Sbjct: 243 EVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDA 302

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           +++F+ M  +D ++W++II  Y ++     AL  F EM    ++P    +  + +    L
Sbjct: 303 QRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQL 362

Query: 310 GALDQGIWIHDHVKR-NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
                G  +H  V R   + VD V+G ALV+MYAK G +D A  VFE +  ++V +WN +
Sbjct: 363 SDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTL 422

Query: 369 IGGLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACAHAGMIDRGLQAL-TYMQQM 426
           I G A +G A +AI+ +  M+  + + P++ T+  +L A +H G + +G++     ++  
Sbjct: 423 ITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNC 482

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
             +D  V    C++D+ G+ G L +A  +   +P E +   W A++ +   HG    GE+
Sbjct: 483 LFLDVFVA--TCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHGH---GEK 536

Query: 487 LGKILLEMEPQNRRCDDVA 505
             ++  +M     + D + 
Sbjct: 537 ALQLFKDMRADGVKADHIT 555



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 137/271 (50%), Gaps = 10/271 (3%)

Query: 209 YLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           +  C +I  AK+L        K ++      +++ +A  G    +   F  +  K+  +W
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSW 117

Query: 265 SAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++++  Y + G Y+++++   E+     ++P  +    VL AC SL     G  +H  V 
Sbjct: 118 NSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWVL 174

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +     D  +  +L+ +Y++ G +++A KVF DM +++V +WNAMI G   +G   +A+ 
Sbjct: 175 KMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALR 234

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           +  +M+ E+++ D +T + +L  CA +  +  G+    Y+ + +G++ +V     ++++ 
Sbjct: 235 VLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK-HGLESDVFVSNALINMY 293

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            + G L +A+ V   M +  +   W +++ A
Sbjct: 294 SKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA 323


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/649 (34%), Positives = 347/649 (53%), Gaps = 55/649 (8%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           +G   D +V   +V C+   +FS    A KVF+ + + +  +WN+++   ++++     I
Sbjct: 135 AGFGSDLFVGSAIVACYF--KFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            ++ +MV      +  T   V    +  +    G+ +    +K G     +V +    +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKDKNTGSYN 234
           +  G +  AR +     + D++ +NA+I GY    + E +  LFK    S +  N+ S  
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 235 AMISGFARFGRF-----------------------------------EEARKLFNEMNDK 259
            +I  F  FG                                     E AR LF+E ++K
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
              +W+A+I GY ++G  ++A+ +F EMQ+ +++P    ++ +L+ACA LGAL  G W+H
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           D + R S   +  + TAL+DMYAKCG +  A ++F  M  K   TWNAMI G  +HG   
Sbjct: 433 DLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGH 492

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A+ LF +M   ++ P  +TF  VL AC+HAG++  G +    M   +G +P  EHY C+
Sbjct: 493 EALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACM 552

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN- 498
           VDLLGRAG L +A + I  MP+EP   VW ALLGAC  H +          L E++PQN 
Sbjct: 553 VDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNV 612

Query: 499 -------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                        +   + A +R ++K R +   PG ++I+V   +H F +GD SHPQ  
Sbjct: 613 GYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQAT 672

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
            IY ML+K+  K++  G+   +   L D++EEEKE   K HSEKLAIAFG I ++PG  I
Sbjct: 673 AIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEI 732

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+IKNLRVC DCH+ATK ISK+ +R I+VRD  R+HHF++G CSC D+W
Sbjct: 733 RIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 213/476 (44%), Gaps = 47/476 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           ++   L Q HA I+ +G   D      L   H  S     + A  +F+++  P++F++N 
Sbjct: 21  STLHQLNQTHAQIILNGLHNDLVTVTKLT--HKLSHLKAIDQASLLFSTIPNPDLFLYNV 78

Query: 104 VLRACLEHNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           ++RA   +N P   +SLY+ +      +P+ FTY  V    S               +  
Sbjct: 79  LIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVA 135

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--C-------- 212
           G   D+ V S+ +  Y  F  V  AR++ D   + D + WN ++ G +K  C        
Sbjct: 136 GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195

Query: 213 GDIEGAKELFKST------------KDKNTG-------------SYNAMISGFA----RF 243
           GD+      F ST            +D   G             S+  +I+G A    + 
Sbjct: 196 GDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKC 255

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  E AR LF ++   D ++++A+I GYT +   + ++ +F E+     K     +  ++
Sbjct: 256 GEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
                 G L     IH    ++ +  ++ + TAL  +Y++   ++ A  +F++   K + 
Sbjct: 316 PVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLA 375

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WNAMI G A +G  + AI LF +MQ+ ++RP+ +T   +LSACA  G +  G + +  +
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDL 434

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                 +  +     ++D+  + G + EA+ + S MP E NA  W A++     HG
Sbjct: 435 INRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 10/249 (4%)

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAA 305
           ++A  LF+ + + D   ++ +I  ++ +     A+ ++  +++   ++P  F  + V++ 
Sbjct: 59  DQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISG 118

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
            +SLG               S   D  +G+A+V  Y K  R+  A KVF+ M  ++   W
Sbjct: 119 ASSLGLGLLLHAHSIVAGFGS---DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLW 175

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG--MIDRGLQALTYM 423
           N M+ GL  +   D+AI +F  M +  +  D  T A VL   A      +  G+Q L   
Sbjct: 176 NTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMK 235

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              +     +    C+    G      E   ++     +P+   + A++     + E E 
Sbjct: 236 VGFHSHAYVITGLACLYSKCGE----IETARLLFGQIGQPDLVSYNAMISGYTCNNETES 291

Query: 484 GERLGKILL 492
             RL K LL
Sbjct: 292 SVRLFKELL 300


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 349/626 (55%), Gaps = 57/626 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + N+  W  ++    +       I L+ +M      P++FTY +V  AC+ 
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICW 202
                 G Q+H+ V++ GL  DV V  S + MYA     G V+ +R++ +   + +V+ W
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 303

Query: 203 NALIDGYLKCGDIEG-AKELF----------------------KSTKDKNTG----SY-- 233
            A+I  Y++ G+ +  A ELF                       +  D  TG    SY  
Sbjct: 304 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 363

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                      N++IS +AR GR E+ARK F+ + +K+ ++++AI+DGY K+   +EA  
Sbjct: 364 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 423

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +FNE+    I    F  + +L+  AS+GA+ +G  IH  + +     +  +  AL+ MY+
Sbjct: 424 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 483

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG ++ A++VF +M+ + V +W +MI G A HG A  A+E+F KM     +P+ IT+  
Sbjct: 484 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 543

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC+H GMI  G +    M + +GI P +EHY C+VDLLGR+G L EA E I+SMP+ 
Sbjct: 544 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 603

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
            +A VW  LLGACR HG  E G    +++LE EP +               +  DV K+R
Sbjct: 604 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 663

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MKER +    G S I+V   +H F  G+ SHPQ  +IY  L ++  K+K  GY P++ 
Sbjct: 664 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 723

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL DI+EE+KE     HSEK+A+AFG I+T     IR+ KNLRVC DCH+A K IS   
Sbjct: 724 FVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMAT 783

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+I+VRD  R+HH +NG CSCND+W
Sbjct: 784 GREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 187/405 (46%), Gaps = 48/405 (11%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M   ++ P+  TY  + K+C      + G  VH  ++++GL  D  V ++ I +Y+  G 
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 184 VNKARQILDD-GSKSDVICWNALIDGY----------------LKCGDIEGA---KELFK 223
              AR I +  G+K D++ W+A++  +                L+ G          + +
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 224 STKDKNTGSYNAMISGF-ARFGRFE---------------------EARKLFNEMNDKDE 261
           +  + N      +I GF  + G  E                      A K+F++M +++ 
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +TW+ +I  + + G  ++A+++F +M+     P +F  S VL+AC  LG L  G  +H  
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256

Query: 322 VKRNSICVDAVLGTALVDMYAKC---GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           V R  + +D  +G +LVDMYAKC   G +D + KVFE M    V +W A+I      G  
Sbjct: 257 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 316

Query: 379 D-DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           D +AIELF KM    +RP+  +F+ VL AC +      G Q  +Y  ++ GI        
Sbjct: 317 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL-GIASVNCVGN 375

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            ++ +  R+G + +A +    +  E N   + A++    K+ + E
Sbjct: 376 SLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKNLKSE 419



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 226/501 (45%), Gaps = 64/501 (12%)

Query: 33  TILDILNTKC--HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           T   IL   C    ++Q  K  H  +++SG   D  V  TL+  +  S+  + E A  +F
Sbjct: 27  TTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLY--SKCGDTETARLIF 84

Query: 91  NSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
             + +K ++  W++++     ++  W+ I  + +M+ +   PN++ +  V +ACS     
Sbjct: 85  EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYA 144

Query: 150 KEGVQVHAHVVKNG-LCGDVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALID 207
             G  ++  VVK G L  DV V    I M+    G +  A ++ D   + +++ W  +I 
Sbjct: 145 WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMIT 204

Query: 208 GYLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARFGRF----------------- 246
            + + G    A +LF     S    +  +Y++++S     G                   
Sbjct: 205 RFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL 264

Query: 247 ---------------------EEARKLFNEMNDKDEITWSAIIDGYTKDGYY-KEALEVF 284
                                +++RK+F +M + + ++W+AII  Y + G   KEA+E+F
Sbjct: 265 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 324

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M    I+P  F  S VL AC +L     G  ++ +  +  I     +G +L+ MYA+ 
Sbjct: 325 CKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 384

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           GR++ A K F+ +  K + ++NA++ G A + ++++A  LF ++    +     TFA +L
Sbjct: 385 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 444

Query: 405 SACAHAGMIDRGLQALTYMQQMYG--IDPEVEHYGCI----VDLLGRAGYLAEAEEVISS 458
           S  A  G + +G       +Q++G  +    +   CI    + +  R G +  A +V + 
Sbjct: 445 SGAASIGAMGKG-------EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497

Query: 459 MPMEPNAAVWEALLGACRKHG 479
           M  + N   W +++    KHG
Sbjct: 498 ME-DRNVISWTSMITGFAKHG 517



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 14/275 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q ++  +K G    + V  +L+  +A S     E A K F+ + + N+  +N+++    
Sbjct: 356 EQVYSYAVKLGIASVNCVGNSLISMYARS--GRMEDARKAFDILFEKNLVSYNAIVDGYA 413

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ +      L++E+       + FT+ ++    +   A  +G Q+H  ++K G   +  
Sbjct: 414 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 473

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           + ++ I MY+  G +  A Q+ ++    +VI W ++I G+ K G    A E+F    ++ 
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 533

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  +Y A++S  +  G   E +K FN M  +  I      ++ ++D   + G   EA
Sbjct: 534 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 593

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +E  N M    +     V   +L AC   G  + G
Sbjct: 594 MEFINSM---PLMADALVWRTLLGACRVHGNTELG 625



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G    A    + M +    P     S +L +C        G  +H  + ++ + +D+V+ 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             L+ +Y+KCG  + A  +FE M  K ++ +W+AM+   A +     AI  F  M     
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGR-AGYLAE 451
            P+   FA V+ AC++A     G     ++ +   ++ +V   GC ++D+  + +G L  
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 183

Query: 452 AEEVISSMPMEPNAAVWEALL 472
           A +V   MP E N   W  ++
Sbjct: 184 AYKVFDKMP-ERNLVTWTLMI 203


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 344/630 (54%), Gaps = 81/630 (12%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           TS     Q HA ILKS   +    + T L    A S   +   A  + NS+   N F  N
Sbjct: 4   TSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHN 63

Query: 103 SVLRACLEHNEPWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +++RA  +  +P + + L+  M+      +P+KFTYP + K+C+  +  + G Q+H  + 
Sbjct: 64  TMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIY 123

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K+                               G +SD    N LI  Y  CG       
Sbjct: 124 KS-------------------------------GLESDRYVSNGLIHMYSSCG------- 145

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                                + GR   A K+F +M D+D ++W+++IDG+  D    EA
Sbjct: 146 ---------------------KSGR---AYKVFGKMRDRDVVSWTSMIDGFVDDDRALEA 181

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           + +F EM  D ++P +  +  VL ACA  GA+  G  +   ++   I ++A + TAL+DM
Sbjct: 182 IRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDM 241

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG +  A KVF+ +  K+VF W AMI GLA HG  ++A+ LF +M+   +RPD  T 
Sbjct: 242 YAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTM 301

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VLSAC +AG    G      M   YGI P ++HYGC+VDLL R G+L EAEE I  MP
Sbjct: 302 TAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMP 361

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKI--LLEMEPQN--------------RRCDDV 504
           +EP+  +W  L+ A + HG+++  E+L K   LL+M+  +               +  D 
Sbjct: 362 IEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDK 421

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           AKMR+LM ++G+   PG S I+V+G++HEF  GD  H + ++IY  L ++ E+LK EGY 
Sbjct: 422 AKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYH 481

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P  S+VL +ID +EK    ++HSEKLA+AFG I T PG  IR++KNLR CEDCHS  KLI
Sbjct: 482 PKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLI 541

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SK++++DIIVRDR+R+HHF NG CSC D+W
Sbjct: 542 SKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/660 (35%), Positives = 349/660 (52%), Gaps = 57/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  ++++G+ +D + +  LV  +  S+  + E+A  VF  +   +V  WN+ +  C+
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVDMY--SKLGDIEMAATVFEKMPAADVVSWNAFISGCV 282

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H    R + L  +M      PN FT  +V KAC+   A   G Q+H  +VK     D  
Sbjct: 283 THGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEF 342

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           V    + MYA  G ++ AR++ D   + D+I WNALI G    G       LF   +   
Sbjct: 343 VAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEG 402

Query: 228 --------------KNTGS-------------------------YNAMISGFARFGRFEE 248
                         K+T S                          N +I  + + G+ + 
Sbjct: 403 LDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDY 462

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A K+F E    D I+ + ++   ++  + ++A+++F +M R  ++P  FVLS +L AC S
Sbjct: 463 AIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTS 522

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L A +QG  +H H+ +     D   G ALV  YAKCG ++ A   F  +  + + +W+AM
Sbjct: 523 LSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAM 582

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLA HG    A++LF +M  E + P+ IT   VLSAC HAG++D   +    M++ +G
Sbjct: 583 IGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFG 642

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           ID   EHY C++D+LGRAG L +A E++++MP + NAAVW ALLGA R H + E G    
Sbjct: 643 IDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAA 702

Query: 489 KILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L  +EP+                  D++AK+RKLMK+  +K  P  S +++   +H F
Sbjct: 703 EKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTF 762

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHP  ++IY  L ++ + +   GY PN    L D+D  EKE    +HSE+LA+AF
Sbjct: 763 IVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAF 822

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+T  GA IRV KNLR+C DCH A K ISK+  R+II+RD  R+HHF NG CSC D+W
Sbjct: 823 ALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/524 (25%), Positives = 229/524 (43%), Gaps = 91/524 (17%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+ +LKSG       S  L+  ++  R  +   A  VF+ +  P    W+S++ A   + 
Sbjct: 27  HSHLLKSGLLAG--FSNHLLTLYSRCRLPS--AARAVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   +  +  M G     N+F  P V K        + G QVHA  V   L  DV V +
Sbjct: 83  MPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDV---RFGAQVHALAVATRLVHDVFVAN 139

Query: 173 SGIQMYACFGCVNKARQILDD----GSKSDVICWNALIDGYLK----------------- 211
           + + +Y  FG V++AR++ D+    G + + + WN +I  Y+K                 
Sbjct: 140 ALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWS 199

Query: 212 ------------------CGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
                               D+E  +++     ++  +K+  + NA++  +++ G  E A
Sbjct: 200 GERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMA 259

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F +M   D ++W+A I G    G+   ALE+  +M+   + P  F LS VL ACA  
Sbjct: 260 ATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA 319

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GA + G  IH  + +     D  +   LVDMYAK G LD A KVF+ M  +++  WNA+I
Sbjct: 320 GAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALI 379

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPD--RITFACVLSACAHAGMI--DRGLQALTYMQQ 425
            G +  GR  + + LF +M++E +  D  R T A VL + A +  I   R + AL    +
Sbjct: 380 SGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALA---E 436

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYL---------AEAEEVISSMPM--------------- 461
             G+  +      ++D   + G L         + ++++ISS  M               
Sbjct: 437 KIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIK 496

Query: 462 ----------EPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
                     EP++ V  +LL AC      E G+++   L++ +
Sbjct: 497 LFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ 540



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 172/373 (46%), Gaps = 47/373 (12%)

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G  +H+H++K+GL       +  + +Y+     + AR + D+      + W++L+  Y  
Sbjct: 23  GAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 212 CGDIEGAKELFKSTK-------------------DKNTGSY-----------------NA 235
            G    A   F++ +                   D   G+                  NA
Sbjct: 81  NGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANA 140

Query: 236 MISGFARFGRFEEARKLFNEM----NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           +++ +  FG  +EAR++F+E      +++ ++W+ +I  Y K+    +A+ VF EM    
Sbjct: 141 LVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSG 200

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            +P +F  SCV+ AC     L+ G  +H  V R     D     ALVDMY+K G ++MA 
Sbjct: 201 ERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAA 260

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VFE M   +V +WNA I G   HG    A+EL  +M+   + P+  T + VL ACA AG
Sbjct: 261 TVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAG 320

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
             + G Q   +M +      E    G +VD+  + G+L +A +V   MP   +  +W AL
Sbjct: 321 AFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMPRR-DLILWNAL 378

Query: 472 LGACR---KHGEV 481
           +  C    +HGEV
Sbjct: 379 ISGCSHDGRHGEV 391



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 162/396 (40%), Gaps = 80/396 (20%)

Query: 28  EFSQKTILDIL-NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           + ++ T+  +L +T    +  H +Q HA+  K G   D +V   L+  +   +    + A
Sbjct: 406 DVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYW--KCGQLDYA 463

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
           +KVF      ++    +++ A  + +     I L+ +M+    +P+ F   ++  AC+  
Sbjct: 464 IKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSL 523

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            A ++G QVHAH++K                          RQ       SDV   NAL+
Sbjct: 524 SAYEQGKQVHAHLIK--------------------------RQF-----TSDVFAGNALV 552

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
             Y KCG IE A   F    ++   S++AMI G A+ G                      
Sbjct: 553 YAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHG---------------------- 590

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
                    + K AL++F+ M  + + P    L+ VL+AC   G +D      + +K  +
Sbjct: 591 ---------HGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKE-T 640

Query: 327 ICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH-----GRA 378
             +D        ++D+  + G+L+ A ++  +M  +     W A++G   +H     GR 
Sbjct: 641 FGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRM 700

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
             A E  F ++ EK      T   + +  A AGM D
Sbjct: 701 --AAEKLFTLEPEKSG----THVLLANTYASAGMWD 730


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 348/626 (55%), Gaps = 57/626 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + N+  W  ++    +       I L+ +M      P++FTY +V  AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICW 202
                 G Q+H+ V++ GL  DV V  S + MYA     G V+ +R++ +   + +V+ W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 203 NALIDGYLKCGDIEG-AKELF----------------------KSTKDKNTG----SY-- 233
            A+I  Y + G+ +  A ELF                       +  D  TG    SY  
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                      N++IS +AR GR E+ARK F+ + +K+ ++++AI+DGY K+   +EA  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +FNE+    I    F  + +L+  AS+GA+ +G  IH  + +     +  +  AL+ MY+
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG ++ A++VF +M+ + V +W +MI G A HG A  A+E+F KM     +P+ IT+  
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC+H GMI  G +    M + +GI P +EHY C+VDLLGR+G L EA E I+SMP+ 
Sbjct: 369 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 428

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
            +A VW  LLGACR HG  E G    +++LE EP +               +  DV K+R
Sbjct: 429 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 488

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MKER +    G S I+V   +H F  G+ SHPQ  +IY  L ++  K+K  GY P++ 
Sbjct: 489 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 548

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL DI+EE+KE     HSEK+A+AFG I+T     IR+ KNLRVC DCH+A K IS   
Sbjct: 549 FVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMAT 608

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+I+VRD  R+HH +NG CSCND+W
Sbjct: 609 GREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 171/376 (45%), Gaps = 49/376 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           KQ H+ +++ G   D  V  +LV    KC A+    +   + KVF  + + NV  W +++
Sbjct: 76  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDD---SRKVFEQMPEHNVMSWTAII 132

Query: 106 RACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            A  +  E     I L+ +M+    +PN F++ +V KAC        G QV+++ VK G+
Sbjct: 133 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 192

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                V +S I MYA  G +  AR+  D   + +++ +NA++DGY K    E A  LF  
Sbjct: 193 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 252

Query: 225 TKDKNT--------------------------------GSY-------NAMISGFARFGR 245
             D                                   G Y       NA+IS ++R G 
Sbjct: 253 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 312

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E A ++FNEM D++ I+W+++I G+ K G+   ALE+F++M     KP +     VL+A
Sbjct: 313 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 372

Query: 306 CASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVF 363
           C+ +G + +G    +   K + I         +VD+  + G L  A +    M  M +  
Sbjct: 373 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 432

Query: 364 TWNAMIGGLAMHGRAD 379
            W  ++G   +HG  +
Sbjct: 433 VWRTLLGACRVHGNTE 448


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 351/623 (56%), Gaps = 77/623 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +  KQ HA +LK G F D +    LV   A +++ + + A  +F  + +P+ F +N+++R
Sbjct: 12  EEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIR 71

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +   +    + LY +M+    +P+KFTYP V KACS+     EG+QVH HV K GL G
Sbjct: 72  GNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEG 131

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV V+                               N+LI+ Y KCG+I           
Sbjct: 132 DVIVQ-------------------------------NSLINMYGKCGEI----------- 149

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                               + A  +FN M++K   +WSAII  +     + E L +  +
Sbjct: 150 --------------------KNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGK 189

Query: 287 MQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M  + + +  +  L  VL+AC  LG+ D G  IH  + RN   ++ V+ T+L+DMY K G
Sbjct: 190 MSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSG 249

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L+   +VF++M  K  +++  MI GLA+HGR  +A+++F +M  E + PD + +  V S
Sbjct: 250 CLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFS 309

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG+++ GLQ    MQ  + I+P V+HYGC+VDLLGR G L EA E+I SM ++PN 
Sbjct: 310 ACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPND 369

Query: 466 AVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLM 511
            +W +LL AC+ H  +E G+   +              +L  M  + ++ DDVAK+R  +
Sbjct: 370 VIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKL 429

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
            ER +   PG S+I+    +++F + D S PQ   IY M+ ++  +LK EGY P++SQVL
Sbjct: 430 AERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVL 489

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D+D+EEK+   K+HS+KLAIAFG I+T  G+ +R+ +NLR+C DCH+ TK IS +++R+
Sbjct: 490 LDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYERE 549

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I VRDR+R+HHF+NG CSC D+W
Sbjct: 550 ITVRDRLRFHHFKNGSCSCKDYW 572


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/635 (36%), Positives = 345/635 (54%), Gaps = 55/635 (8%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           L T C T+ +   + HA +L++G     D  V+  L + +A S     +L+L +      
Sbjct: 295 LLTSCSTA-RRAAELHAAVLRTGLLDATDRAVAFRLQRAYAAS--GRLDLSLALLRRTRD 351

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P    + S + A          ++L S+M+     P   T      AC        G  +
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPAC---RGLSPGRAL 408

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           H +  K  L GD +V ++ + MYA                               + GD 
Sbjct: 409 HGYAFKLALAGDSYVATALLGMYA-------------------------------RAGDA 437

Query: 216 EGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
             A+ LF     D +  S  AM++ +A  G  ++AR LF+ +  KD + W+A+IDGYT+ 
Sbjct: 438 TAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQH 497

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVL 333
           G   EAL +F  M    ++P +  +  VL+A A LG ++ G W+H +VK +  + +   +
Sbjct: 498 GRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRV 557

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           GTAL+DMY KCG L  A  VF  +  K++  WNAMI G AMHG +  A+E+F + + + +
Sbjct: 558 GTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGL 617

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            P  ITF  +L+AC+H+GM++ G +    M++ YGIDP++EHYGC+VDLLGRAG + EA 
Sbjct: 618 WPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAF 677

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
            ++ SM + P+A +W +LL ACR H  +  G+++   L+     N               
Sbjct: 678 CLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVG 737

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
              +VA++R +MK  GI+  PG S I+++  ++EF  GD SHP+  EIY+ML K+   +K
Sbjct: 738 NWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVK 797

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             G+ P +  VL D+DE  KE A   HSEKLA+AFG I+T PGATI+++KNLR C DCH+
Sbjct: 798 EHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHA 857

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             KLIS++  R I+ RDR R+HHF +G CSC D+W
Sbjct: 858 VLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/677 (34%), Positives = 373/677 (55%), Gaps = 68/677 (10%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96
           ++++  H +   L+Q HA +L  G     ++   L+  HA+S + +   A +VF+ + +P
Sbjct: 27  LIDSSTHKA--QLRQIHARLLVLGLQFSGFLITKLI--HASSSYGDITFARQVFDDLPRP 82

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
            VF WN+++R    +N     + +YS+M      P+ FT+P + KAC      + G  VH
Sbjct: 83  QVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVH 142

Query: 157 AHVVKNGLCGDVHVKSSGIQMYA-C--FGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           A V + G   DV V++  I +YA C   GC     + L    ++ ++ W A++  Y + G
Sbjct: 143 AQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERT-IVSWTAIVSAYAQNG 201

Query: 214 DIEGAKELFKSTK----------------------DKNTG-------------------- 231
           +   A E+F   +                      D   G                    
Sbjct: 202 EPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI 261

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S N M   +A+ G+   A+ LF++M   + I W+A+I GY K+G+ K+A+++F+EM    
Sbjct: 262 SLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P    ++  ++ACA +G+L+Q  W+ ++V R+    D  + +AL+DM+AKCG ++ A 
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VF+    ++V  W+AMI G  +HG+A +AI L+  M+R+ + P+ +TF  +L AC H+G
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           M+  G      M   + I+P+ +HY CI+DLLGRAG+L +A EVI  MP++P   VW AL
Sbjct: 439 MVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGAL 497

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           L AC+KH  VE G+   + L  ++P N              R  D VA++R  MKE+G+ 
Sbjct: 498 LSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
            + G S ++V G +  FR GD SHP+ +EI   ++ I  +LK  G+  N    L D+++E
Sbjct: 558 KDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE 617

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           E E     HSE++ IA+G I+T  G T+R+ KNLR C +CH+ATKLISK+  R+I+VRD 
Sbjct: 618 EAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDT 677

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHF++G CSC D+W
Sbjct: 678 NRFHHFKDGVCSCGDYW 694



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 126/283 (44%), Gaps = 14/283 (4%)

Query: 33  TILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
            ++ +LN   C    +  +  HA ++K G   +  +  +L   +A  +      A  +F+
Sbjct: 224 ALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYA--KCGQVATAKILFD 281

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +  PN+ +WN+++    ++      I L+ EM+  D +P+  +  +   AC+   + ++
Sbjct: 282 KMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQ 341

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
              +  +V ++    DV + S+ I M+A  G V  AR + D     DV+ W+A+I GY  
Sbjct: 342 ARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGL 401

Query: 212 CGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEIT 263
            G    A  L+++ +      N  ++  ++      G   E    FN M D      +  
Sbjct: 402 HGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQH 461

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++ IID   + G+  +A EV   M    ++P   V   +L+AC
Sbjct: 462 YACIIDLLGRAGHLDQAYEVIKCM---PVQPGVTVWGALLSAC 501


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 348/626 (55%), Gaps = 57/626 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + N+  W  ++    +       I L+ +M      P++FTY +V  AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICW 202
                 G Q+H+ V++ GL  DV V  S + MYA     G V+ +R++ +   + +V+ W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 203 NALIDGYLKCGDIEG-AKELF----------------------KSTKDKNTG----SY-- 233
            A+I  Y + G+ +  A ELF                       +  D  TG    SY  
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                      N++IS +AR GR E+ARK F+ + +K+ ++++AI+DGY K+   +EA  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +FNE+    I    F  + +L+  AS+GA+ +G  IH  + +     +  +  AL+ MY+
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG ++ A++VF +M+ + V +W +MI G A HG A  A+E+F KM     +P+ IT+  
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC+H GMI  G +    M + +GI P +EHY C+VDLLGR+G L EA E I+SMP+ 
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
            +A VW  LLGACR HG  E G    +++LE EP +               +  DV K+R
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 483

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MKER +    G S I+V   +H F  G+ SHPQ  +IY  L ++  K+K  GY P++ 
Sbjct: 484 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 543

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL DI+EE+KE     HSEK+A+AFG I+T     IR+ KNLRVC DCH+A K IS   
Sbjct: 544 FVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMAT 603

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+I+VRD  R+HH +NG CSCND+W
Sbjct: 604 GREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 171/376 (45%), Gaps = 49/376 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           KQ H+ +++ G   D  V  +LV    KC A+    +   + KVF  + + NV  W +++
Sbjct: 71  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDD---SRKVFEQMPEHNVMSWTAII 127

Query: 106 RACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            A  +  E     I L+ +M+    +PN F++ +V KAC        G QV+++ VK G+
Sbjct: 128 TAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 187

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                V +S I MYA  G +  AR+  D   + +++ +NA++DGY K    E A  LF  
Sbjct: 188 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 247

Query: 225 TKDKNT--------------------------------GSY-------NAMISGFARFGR 245
             D                                   G Y       NA+IS ++R G 
Sbjct: 248 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 307

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E A ++FNEM D++ I+W+++I G+ K G+   ALE+F++M     KP +     VL+A
Sbjct: 308 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 367

Query: 306 CASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVF 363
           C+ +G + +G    +   K + I         +VD+  + G L  A +    M  M +  
Sbjct: 368 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 427

Query: 364 TWNAMIGGLAMHGRAD 379
            W  ++G   +HG  +
Sbjct: 428 VWRTLLGACRVHGNTE 443


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/682 (34%), Positives = 371/682 (54%), Gaps = 58/682 (8%)

Query: 28  EFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           E  Q T + +L T        L +Q H + LK G      VS +L+  +   R     LA
Sbjct: 319 ECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR--KIGLA 376

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-I 145
             VFN++ + ++  WNSV+    + +     + L+ +++    KP+ +T  +V KA S +
Sbjct: 377 RTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSL 436

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            E      Q+H H +K     D  V ++ I  Y+   C+ +A ++L   +  D++ WNA+
Sbjct: 437 PEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEA-EVLFGRNNFDLVAWNAM 495

Query: 206 IDGYLKCGDIEGAKELF---------------------------------------KSTK 226
           + GY +  D     ELF                                       KS  
Sbjct: 496 MSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGY 555

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D +    + ++  + + G    A+  F+ +   D++ W+ +I G  ++G  + AL VF++
Sbjct: 556 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQ 615

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+   + P +F ++ +  A + L AL+QG  IH +  + +   D  +GT+LVDMYAKCG 
Sbjct: 616 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGS 675

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D A+ +F+ ++M  +  WNAM+ GLA HG   +A++LF +M+   ++PD++TF  VLSA
Sbjct: 676 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSA 735

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H+G++    + +  M + YGI PE+EHY C+ D LGRAG + EAE +I SM ME +A+
Sbjct: 736 CSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASAS 795

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMK 512
           ++  LL ACR  G+ E G+R+   LLE+EP +               + D++   R +MK
Sbjct: 796 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 855

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
              +K +PG S I+V   IH F   D S+PQ + IY  +K +I  +K EGY P +   L 
Sbjct: 856 GHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLV 915

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEEKE A  YHSEKLA+AFG ++T P   IRVIKNLRVC DCH+A K ISKV+ R+I
Sbjct: 916 DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREI 975

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           ++RD  R+H F++G CSC D+W
Sbjct: 976 VLRDANRFHRFKDGICSCGDYW 997



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 201/473 (42%), Gaps = 33/473 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA IL      + ++   L+  +  S+  +   A +VF+ + + ++  WNS+L A  
Sbjct: 66  KCTHARILALEENPERFLVNNLISMY--SKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123

Query: 110 EHNEPW-----RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + +E           L+  +       ++ T   + K C  +         H +  K GL
Sbjct: 124 QSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
            GD  V  + + +Y  FG V + R + ++    DV+ WN ++  YL+ G  E A +L  +
Sbjct: 184 DGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 243

Query: 225 TKDKNTGSYNAMISGFARF-GRFEEARKL--FNEMNDKDE----ITWSAIIDGYTKDGYY 277
                       +   +R  G   EA ++  F   ND       I+ + I+ GY   G Y
Sbjct: 244 FHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQY 303

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
              L+ F +M    ++  +     VLA    L +L  G  +H    +  + +   +  +L
Sbjct: 304 SALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSL 363

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           ++MY K  ++ +A  VF +M  +++ +WN++I G+A      +A+ LF ++ R  ++PD 
Sbjct: 364 INMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDH 423

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGI------DPEVEHYGCIVDLLGRAGYLAE 451
            T   VL A   A  +  GL +L+    ++ I      D  V     ++D   R   + E
Sbjct: 424 YTMTSVLKA---ASSLPEGL-SLSKQIHVHAIKTNNVADSFVS--TALIDAYSRNRCMKE 477

Query: 452 AEEVISSMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
           AE +      +  A  W A++ G  + H     G +  ++   M  Q  R DD
Sbjct: 478 AEVLFGRNNFDLVA--WNAMMSGYTQSHD----GHKTLELFALMHKQGERSDD 524


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 337/593 (56%), Gaps = 22/593 (3%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A  R    E A  +FNS  + +V  WN+++   ++  +      L+  M G D       
Sbjct: 171 AYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
                +   + EA +        +       DV   ++ +  YA  G + +AR++ D   
Sbjct: 231 VSGYARRGDMVEARR--------LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + + + WNA++  Y++   ++ AKELF     +N  S+N M++G+A+ G  EEA+ +F+ 
Sbjct: 283 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M  KD ++W+A++  Y++ G  +E L++F EM R      +   +CVL+ CA + AL+ G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
           + +H  + R    V   +G AL+ MY KCG ++ A   FE+M+ ++V +WN MI G A H
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G   +A+E+F  M+    +PD IT   VL+AC+H+G++++G+     M   +G+  + EH
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           Y C++DLLGRAG LAEA +++  MP EP++ +W ALLGA R H   E G    + + E+E
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 496 PQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           P+N               +  D  KMR +M+ERG+K  PG S I+V   +H F  GD  H
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 642

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
           P+ ++IY  L+ +  ++K  GY   +  VL D++EEEKE   KYHSEKLA+A+G +N  P
Sbjct: 643 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 702

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G  IRVIKNLRVC DCH+A K IS +  R I++RD  R+HHFR G CSC D+W
Sbjct: 703 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 206/441 (46%), Gaps = 38/441 (8%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L    AN R     LA  +F ++ +P+ + +N++L A    +       L+ EM   DS 
Sbjct: 76  LAGYSANGRLP---LAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDS- 131

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
               TY  +      + A+   V +  H        D    +  +  Y   G V +AR +
Sbjct: 132 ---VTYNVMIS----SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL 184

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            +  ++ DVI WNAL+ GY++ G +  A+ELF     ++  S+N M+SG+AR G   EAR
Sbjct: 185 FNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           +LF+    +D  TW+A++ GY ++G  +EA  VF+ M +R+ +       + ++AA    
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQR 299

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             +D+   + + +     C +      ++  YA+ G L+ A  VF+ M  K+  +W AM+
Sbjct: 300 RMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 355

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYG 428
              +  G +++ ++LF +M R     +R  FACVLS CA    ++ G+Q    + +  YG
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 429 IDPEVEHYGCIVD-----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +       GC V      +  + G + +A      M  E +   W  ++    +HG   F
Sbjct: 416 V-------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG---F 464

Query: 484 GERLGKILLEMEPQNRRCDDV 504
           G+   +I   M   + + DD+
Sbjct: 465 GKEALEIFDMMRTTSTKPDDI 485



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 43/326 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G V  A ++     +     +NA++ GY   G +  A  LF++    +  SYN ++   A
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                 +AR LF+EM  +D +T++ +I  +   G    A   F+      + P K  +S 
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD------LAPEKDAVSW 165

Query: 302 --VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +LAA    G +++   + +    +    D +   AL+  Y + G++  A ++F+ M  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPG 221

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +WN M+ G A  G   +A  LF       +R D  T+  V+S  A  GM++   + 
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLF---DAAPVR-DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 420 LTYM------------------------QQMYGIDP--EVEHYGCIVDLLGRAGYLAEAE 453
              M                        ++++ + P   V  +  ++    +AG L EA+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 454 EVISSMPMEPNAAVWEALLGACRKHG 479
            V  +MP + +A  W A+L A  + G
Sbjct: 338 AVFDTMP-QKDAVSWAAMLAAYSQGG 362



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 130/282 (46%), Gaps = 24/282 (8%)

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + +VI  N  I  +++ G +  A+ LF +   ++T +YNAM++G++  GR   A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQ 314
           +   D  +++ ++          +A  +F+EM  RD +       + ++++ A+ G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV-----TYNVMISSHANHGLVSL 149

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
                D         DAV    ++  Y + GR++ A  +F      +V +WNA++ G   
Sbjct: 150 ARHYFDLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
            G+  +A ELF +M       D +++  ++S  A  G        +   ++++   P  +
Sbjct: 206 WGKMSEARELFDRMPGR----DVVSWNIMVSGYARRG-------DMVEARRLFDAAPVRD 254

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           V  +  +V    + G L EA  V  +MP E NA  W A++ A
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA 295


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 327/558 (58%), Gaps = 48/558 (8%)

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
           P   + L+  ++   + P+   Y      C+   A     Q+H H  K G      V++ 
Sbjct: 56  PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNG 115

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY 233
            I  Y+  G +  AR++ D G + D+I WN L+ GY                + ++TG+ 
Sbjct: 116 LIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGY---------------AQGRDTGAL 160

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKI 292
                           R+ F +M  +D ++W+ +I     +G ++EA+ VF EM   ++ 
Sbjct: 161 ----------------REFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNEC 204

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P +  L  V++A A LGAL QG+W H +V R  I VD  L +AL++MY+KCG ++ A  
Sbjct: 205 QPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVY 264

Query: 353 VFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           VFE+   ++ V TWNAM+ G    G ++ A+ELF +M+     P++ITF  +L+AC+H G
Sbjct: 265 VFENSCALRSVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGG 324

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            ++ G+     M     I+P++ HYGC+VDL  RAG   +AEE+I  MPMEP+AAVW+AL
Sbjct: 325 FVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKAL 384

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIK 517
           +GACR +   E G++ G  L+E  P +                   V K+RKLM   G++
Sbjct: 385 VGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQ 444

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PGSS I+++GVIHEF +GD SH + +++Y ML +I ++LK+ GY+P++SQVL DID+E
Sbjct: 445 KVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDE 504

Query: 578 E-KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           + KE++   HSE+LA+AFG I+T PG  IR++KNLRVC DCH+A KL+SK++ R I+VRD
Sbjct: 505 DVKESSLALHSERLALAFGLISTAPGTPIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRD 564

Query: 637 RVRYHHFRNGKCSCNDFW 654
             R+H FR G CSC D+W
Sbjct: 565 ANRFHRFREGSCSCGDYW 582



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 124/307 (40%), Gaps = 47/307 (15%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA--- 107
           Q H    K G      V   L+  HA S       A KVF+   + ++  WN +LR    
Sbjct: 96  QLHGHAAKRGAASHRRVRNGLI--HAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQ 153

Query: 108 ----------------------------CLEHNEPWRVISLYSEMVGVDS-KPNKFTYPT 138
                                       C+ + E    ++++ EM+  +  +P++ T  +
Sbjct: 154 GRDTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVS 213

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG-SKS 197
           V  A +   A  +G+  HA+V +  +  D  + S+ I MY+  G +  A  + ++  +  
Sbjct: 214 VISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALR 273

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLF 253
            V  WNA++ G+   G  E A ELF   +      N  ++N +++  +  G  EE    F
Sbjct: 274 SVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYF 333

Query: 254 NEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
             M +   I      +  ++D + + G +++A E+   M    ++P   V   ++ AC +
Sbjct: 334 ERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMM---PMEPDAAVWKALVGACRT 390

Query: 309 LGALDQG 315
               + G
Sbjct: 391 YSNFELG 397


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/652 (35%), Positives = 358/652 (54%), Gaps = 94/652 (14%)

Query: 34  ILDILNTKCHTSWQHLKQAHAVILK---SGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           ++ +LN     +   LKQ HA  L+   S H    ++   +++ +++    N   A +VF
Sbjct: 23  LIHLLNEPTTITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVF 82

Query: 91  NSVHKPNVFVWNSVLRA---CLEHNEPWRVISLYSEMVGVDSK---PNKFTYPTVFKACS 144
           +    PN F+WN+++R        N   + + LY  M+ ++ K   P+  T+P V KAC+
Sbjct: 83  HHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACA 142

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            T +  EG QVHAHV+K+                               G +SD    N+
Sbjct: 143 YTFSLCEGKQVHAHVLKH-------------------------------GFESDTYICNS 171

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+  Y  CG ++ A+                               K+F +M++++E++W
Sbjct: 172 LVHFYATCGCLDLAE-------------------------------KMFYKMSERNEVSW 200

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +ID Y K G +  AL +F EMQR    P  + +  V++ACA LGAL  G+W+H ++ +
Sbjct: 201 NIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLWVHAYILK 259

Query: 325 N---SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
               ++  D ++ T LVDMY K G L++A +VFE M  +++  WN+MI GLAMHG A  A
Sbjct: 260 KCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAA 319

Query: 382 IELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           +  + +M + EK+ P+ ITF  VLSAC H GM+D G+     M + Y ++P +EHYGC+V
Sbjct: 320 LNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLV 379

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC-RKHGEVEFGERLGKILLEME---- 495
           DL  RAG + EA  ++S M ++P+A +W +LL AC +++  VE  E + K + E E    
Sbjct: 380 DLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVC 439

Query: 496 ------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
                           R +DV  +RKLM E+G+   PG S+I+++GV+HEF  GD +HP+
Sbjct: 440 SSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPK 499

Query: 544 VKEIYLMLKKIIEKLKMEGYSPN-SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
            + IY ++ +I EKL+  GY P+ S   + D   + K    + HSE+LAIAFG +N+ P 
Sbjct: 500 SENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPD 559

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             IRV KNLRVC DCH  TKLIS+++  +IIVRDR R+HHF++G CSC D+W
Sbjct: 560 VPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 345/645 (53%), Gaps = 78/645 (12%)

Query: 24   IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
            I  +E   KTI     T   + +  LK+ HA I   G   D  +       + +  F+  
Sbjct: 711  IKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVS--FNRI 768

Query: 84   ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
            + A  VF  +  P  F+WN ++R           + LYS+M+    KP+KF +P   K+C
Sbjct: 769  DAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSC 828

Query: 144  SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
            +     + G  +H H+V                   C GC N            D+    
Sbjct: 829  AGLSDLQRGKVIHQHLV-------------------CCGCSN------------DLFVDA 857

Query: 204  ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
            AL+D Y KCGDIE                                AR +F++M  +D ++
Sbjct: 858  ALVDMYAKCGDIEA-------------------------------ARLVFDKMAVRDLVS 886

Query: 264  WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
            W+++I GY  +GY  E L  F+ M+   + P +  +  VL AC +LGAL +G W H +V 
Sbjct: 887  WTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVI 946

Query: 324  RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
            +     D ++ TA++DMY+KCG LD+A  +F++   K++  W+AMI    +HG    AI+
Sbjct: 947  QTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAID 1006

Query: 384  LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
            LF +M +  +RP  +TF CVLSAC+H+G+++ G      M + + I  ++ +Y C+VDLL
Sbjct: 1007 LFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLL 1066

Query: 444  GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------- 496
            GRAG L+EA ++I +MP+EP+A++W +LLGACR H  ++  E++   L  ++P       
Sbjct: 1067 GRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHV 1126

Query: 497  -------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                      R ++V K+RK+M  RG     G S+++ +  +H+F  GD SHPQ +++Y 
Sbjct: 1127 LLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYA 1186

Query: 550  MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
             L+++   +K  GY P +  VL DI+EE KE A  YHSE+LAIAFG INT PG T+R+ K
Sbjct: 1187 KLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITK 1246

Query: 610  NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            NLR+C DCH+A KLISK+  R I+VRD  R+H F +G CSC D+W
Sbjct: 1247 NLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 172/566 (30%), Positives = 287/566 (50%), Gaps = 57/566 (10%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
            D +V   LV+ +  S+      ALKVF    +P+  +W S++    ++N+P   ++L+S
Sbjct: 137 SDMFVGSALVELY--SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFS 194

Query: 123 EMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
           +MV +D    +  T  +V  AC+     K G  VH  V++    GD+ + +S + +YA  
Sbjct: 195 QMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKT 254

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------------- 228
           GC   A  +     + DVI W+ +I  Y        A  LF    +K             
Sbjct: 255 GCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL 314

Query: 229 --------------------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                                     +     A+I  + +    +EA  LF  +  KD +
Sbjct: 315 QACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVV 374

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W A++ GY ++G   +++ VF  M  D I+P    +  +LAA + LG   Q + +H +V
Sbjct: 375 SWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV 434

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            R+    +  +G +L+++Y+KCG L  A K+F+ M +++V  W++MI    +HGR  +A+
Sbjct: 435 VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEAL 494

Query: 383 ELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           E+F +M +   +RP+ +TF  +LSAC+HAG+++ GL+    M   Y + P+ EH+G +VD
Sbjct: 495 EIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVD 554

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ---- 497
           LLGR G L +A ++I+ MP+     VW ALLGACR H  +E GE   K L  ++P     
Sbjct: 555 LLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGY 614

Query: 498 ----------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                     + + D+VA++R  +KERG+K   G SM++V G +H F   D  HP  ++I
Sbjct: 615 YILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKI 674

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFD 573
           Y +L+K+  ++  E Y P+   +L D
Sbjct: 675 YELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 229/492 (46%), Gaps = 48/492 (9%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           S++ ++D+    C+   + + Q H+ + K+G   D + +  L   +A  + ++ + A KV
Sbjct: 3   SRQVLVDLFQA-CNNG-RSVSQLHSQVFKTGILHDTFFATKLNSLYA--KCASLQAARKV 58

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEA 148
           F+    PNV +WNS LR+     +    + L+  M+      P+ FT P   KAC+    
Sbjct: 59  FDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRM 118

Query: 149 DKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
            + G  +H    KN   G D+ V S+ +++Y+  G + +A ++ ++  + D + W +++ 
Sbjct: 119 LELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVT 178

Query: 208 GYLKCGDIEGAKELF----------------------------------------KSTKD 227
           GY +  D E A  LF                                        +   D
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD 238

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            +    N++++ +A+ G  + A  LF++M +KD I+WS +I  Y  +    EAL +F+EM
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
              + +P    +   L ACA    L++G  IH         +D  + TAL+DMY KC   
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           D A  +F+ +  K+V +W A++ G A +G A  ++ +F  M  + ++PD +    +L+A 
Sbjct: 359 DEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAAS 418

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +  G+  + L    Y+ +  G +  V     +++L  + G L +A ++   M +  +  +
Sbjct: 419 SELGIFQQALCLHGYVVR-SGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVI 476

Query: 468 WEALLGACRKHG 479
           W +++ A   HG
Sbjct: 477 WSSMIAAYGIHG 488



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 14/285 (4%)

Query: 205 LIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           L+D +  C +     +L    FK+    +T     + S +A+    + ARK+F+E    +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
              W++ +  Y ++  ++E L +F+ M       P  F +   L ACA L  L+ G  IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 320 DHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
              K+N  I  D  +G+ALV++Y+KCG++  A KVFE+ +  +   W +M+ G   +   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 379 DDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEH 435
           ++A+ LF +M   + +  D +T   V+SACA    +  G  +  L   ++  G  P V  
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
              +++L  + G    A  + S MP E +   W  ++ AC  + E
Sbjct: 247 ---LLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-ACYANNE 286



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  +++SG   + +V  +L++ +  S+  +   A+K+F  +   +V +W+S++ A   H 
Sbjct: 431 HGYVVRSGFNSNVFVGASLIELY--SKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHG 488

Query: 113 EPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
                + ++ +MV   + +PN  T+ ++  ACS     +EG+++   +V +
Sbjct: 489 RGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHD 539


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 330/567 (58%), Gaps = 76/567 (13%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           NS++R   + N+    + +Y++M      P+  T+PTV K+ +     + G  +H  +++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G                                +S+V    AL++ Y  C  +      
Sbjct: 171 MGF-------------------------------ESNVYVSTALVNMYGTCSSVS----- 194

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                     +AR++F+E+ D++ ++W+A+I GY  +  +++ +
Sbjct: 195 --------------------------DARQVFDEIPDRNIVSWNALITGYNHNRMFRKVI 228

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           +VF EMQ    KP +  +  VL ACA LGAL+QG WI D++  N + ++  +GTAL+DMY
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMY 288

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +D A K+F+ M++K V+TWN +I G AM+GR + A++ F +M  EK +PD +TF 
Sbjct: 289 AKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFL 348

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL AC H G+++ G    T M++ +G+ P +EHYGC+VDLLGRAG+L EA+++I +M M
Sbjct: 349 GVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM 408

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +P+  +W  LLGACR HG ++ GE   K LLE+EP N              +R D V ++
Sbjct: 409 QPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R++M  R ++  PG S I+++ V++EF   +   P  +E+Y +L  + +KLK+ GY  ++
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADT 528

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
               +DI+EEEKE +  YHSEKLA+AFG + +  G T+R++KNLR+C+DCH   K++SKV
Sbjct: 529 GMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKV 588

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++RDI VRDR R+HHF  G CSC D+W
Sbjct: 589 YRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 151/347 (43%), Gaps = 30/347 (8%)

Query: 33  TILDILNTKCHTSWQHLKQA-HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T   +L +      Q L +A H  I++ G   + YVS  LV  +     S+   A +VF+
Sbjct: 144 TFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTC--SSVSDARQVFD 201

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
            +   N+  WN+++     HN  +R VI ++ EM    +KP + T   V  AC+   A  
Sbjct: 202 EIPDRNIVSWNALITG-YNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALN 260

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           +G  +  ++  N L  +V V ++ I MYA  G V++A +I       +V  WN LI GY 
Sbjct: 261 QGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYA 320

Query: 211 KCGDIEGAKELF------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT- 263
             G  E A + F      K   D+ T  +  ++      G   E R  F  M ++  +  
Sbjct: 321 MNGRGESALQAFSRMIMEKFKPDEVT--FLGVLCACCHQGLVNEGRTYFTSMKEEFGLRP 378

Query: 264 ----WSAIIDGYTKDGYYKEALEVFN--EMQRDKIKPRKFVLSCVLAACASLG--ALDQG 315
               +  ++D   + G+  EA ++     MQ D I  R+ + +C +     LG  A+ + 
Sbjct: 379 RIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKL 438

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           + +  +   N +         L ++YA+  R D   +V E M  + V
Sbjct: 439 LELEPNNGENYV--------LLANLYARDQRWDKVGEVREMMDCRRV 477


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/686 (35%), Positives = 372/686 (54%), Gaps = 110/686 (16%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           MS  +    L  H++P   ++ +  T+    + IL +  T    S   LKQ HA  L++ 
Sbjct: 1   MSISLLLHPLSPHIQPA--NSPSASTAGNHHRRILSLAETCSDMS--QLKQLHAFTLRTT 56

Query: 61  HFQDH---YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL-EHNEPWR 116
           +  +    ++ G +++   +S FS+   A +VF+S+   + F+WN+++RAC  + +    
Sbjct: 57  YPDEPATLFLYGKILQ--LSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEE 114

Query: 117 VISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
              LY +M+   +S P+K T+P V KAC+      EG QVH  +VK+G  G         
Sbjct: 115 AFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSG--------- 165

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
                                 DV   N LI  Y  CG ++                   
Sbjct: 166 ----------------------DVYVNNGLIHFYGSCGCLD------------------- 184

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
                        ARK+F+EM ++  ++W+++ID   + G Y  AL++F +MQ+   +P 
Sbjct: 185 ------------LARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQK-SFEPD 231

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWK 352
            + +  VL+ACA LG+L  G W H  + RN    + +D ++  +L++MY KCG L MA +
Sbjct: 232 GYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQ 291

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE--KMRPDRITFACVLSACAHA 410
           VF+ M+  ++ +WNAMI G A HG+A++A+  F  M +E   ++P+ +TF  +L AC H 
Sbjct: 292 VFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHR 351

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           GM+++G Q    M + YGI+P +EHYGCI+DLL RAGY+ EA +++ SMPM+P+A +W +
Sbjct: 352 GMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRS 411

Query: 471 LLGACRKHG-EVEFGERLGKILLEMEPQNR---------------------RCDDVAKMR 508
           LL AC K G  VE  E + + ++     N+                     R +DV  +R
Sbjct: 412 LLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVR 471

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           KLM + GI+  PG S I++NG+ +EF  GD SHPQ K+IY  LK I ++L+         
Sbjct: 472 KLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLR--------- 522

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            ++   ++  KE + + HSE+LAIAFG I+  P   IR+ KNLRVC DCH  TKLISKVF
Sbjct: 523 SIVDATNDSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVF 582

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +IIVRDRVR+HHF++G CSC D+W
Sbjct: 583 NTEIIVRDRVRFHHFKDGSCSCLDYW 608


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 326/537 (60%), Gaps = 21/537 (3%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKP-NVFVWNSVLR 106
           L Q H +++K+   ++ Y  G L+   A+     +   A K+F++V  P N F++ ++++
Sbjct: 47  LIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIK 106

Query: 107 ACLEHNEPWRVISLYSEMVGVDSK---PNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           A      P    + YS M+  D +   PN FT+  VF ACS      EG Q HA ++K  
Sbjct: 107 AYANFGNPREAFAFYSRML-CDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFP 165

Query: 164 LCGDVHVKSSGIQMYACFGCVN-KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
               VH  +S +  Y   G V    R++ D     DV+ WN LI+GY+K GD++ A+ LF
Sbjct: 166 FEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLF 225

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               +++  S+  M+ G+A  G   EA  LF+EM  ++ ++WSA+I GY + G Y +ALE
Sbjct: 226 DEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALE 285

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F EMQ  K+K  + +++ +L+ACA LGALDQG W+H ++ ++ I VDA L TAL+DMY+
Sbjct: 286 LFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYS 345

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCGR+DMAWKVF++   K+VF W++MIGGLAMH   + AIELF KM    + P  IT+  
Sbjct: 346 KCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYIN 405

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +L+AC H+G++D GLQ    M +     P ++HYGCIVDLLGRAG L +A  V+ +MP++
Sbjct: 406 ILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVK 465

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMR 508
            + A+W ALL AC+ H  VE GE++G+IL++MEPQN               R D   K+R
Sbjct: 466 ADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLR 525

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           + MK RG++ NPG S I++NG +HEF + D SHPQ + IY +L  +   +  E + P
Sbjct: 526 REMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELLHILTNHMVQEDHEP 582


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 365/672 (54%), Gaps = 70/672 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  L+ G   + ++  TLV  +   +      +  +  S    ++  WN+VL +  
Sbjct: 218 KQVHAYGLRKGEL-NSFIINTLVAMYG--KMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           ++ +    +    EMV    +P+ FT  +V  ACS  E  + G ++HA+ +KNG L  + 
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
            V S+ + MY     V    ++ D      +  WNA+I GY +    E A  LF      
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEES 394

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K   D++    NA++  ++R G+ + 
Sbjct: 395 AGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDI 454

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-----------RDKIKPRKF 297
           A+++F +M D+D +TW+ II GY     +++AL + ++MQ           R  +KP   
Sbjct: 455 AKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSI 514

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  +L +CA+L AL +G  IH +  +N++  D  +G+ALVDMYAKCG L M+ KVF+ +
Sbjct: 515 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
            ++ V TWN ++    MHG + DAI++   M  + ++P+ +TF  V +AC+H+GM++ GL
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-PNAAVWEALLGACR 476
           +    M++ YG++P  +HY C+VDLLGRAG + EA ++I+ +P     A  W +LLGACR
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 477 KHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKTNPGS 522
            H  +E GE   + L+++EP                       ++R+ MK +G++  PG 
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+    +H+F  GD SHPQ +++   L+ + E+++ EGY P++S VL +++E+EKE  
Sbjct: 755 SWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEIL 814

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +NT PG  IRV KNLRVC DCH ATK ISKV  R+II+RD  R+HH
Sbjct: 815 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHH 874

Query: 643 FRNGKCSCNDFW 654
           F+NG CSC D+W
Sbjct: 875 FKNGTCSCGDYW 886



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 231/526 (43%), Gaps = 81/526 (15%)

Query: 50  KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           KQ HA + K G+  D   V+ TLV  +   +  +F    KVF+ + + N   WNS++ + 
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGAVYKVFDRISERNQVSWNSLISSL 170

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS---ITEADKEGVQVHAHVVKNGLC 165
               +    +  +  M+  D +P+ FT  +V  ACS   + E    G QVHA+ ++ G  
Sbjct: 171 CSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL 230

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------YLKCG 213
               + ++ + MY   G +  ++ +L      D++ WN ++              YL+  
Sbjct: 231 NSF-IINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREM 289

Query: 214 DIEGAK----------------ELFKSTK------------DKNTGSYNAMISGFARFGR 245
            +EG +                E+ ++ K            D+N+   +A++  +    +
Sbjct: 290 VLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQ 349

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLA 304
                ++F+ M D+    W+A+I GY ++ Y +EAL +F EM+    +      ++ V+ 
Sbjct: 350 VLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVP 409

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC   GA  +   IH  V +  +  D  +  AL+DMY++ G++D+A ++F  M+ +++ T
Sbjct: 410 ACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVT 469

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQ-----------REKMRPDRITFACVLSACAHAGMI 413
           WN +I G     R +DA+ +  KMQ           R  ++P+ IT   +L +CA    +
Sbjct: 470 WNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSAL 529

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +G +   Y  +   +  +V     +VD+  + G L  + +V   +P+  N   W  ++ 
Sbjct: 530 AKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVM 587

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
           A   HG  +                    D   M ++M  +G+K N
Sbjct: 588 AYGMHGNSQ--------------------DAIDMLRMMMVQGVKPN 613



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 164/411 (39%), Gaps = 71/411 (17%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           K  +  H P    W  +LR+ +  N     +  Y +M+ +  KP+ F +P + KA +  +
Sbjct: 50  KFISQSHSPEW--WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQ 107

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G Q+HAHV K G   D                               V   N L++
Sbjct: 108 DMDLGKQIHAHVYKFGYGVD------------------------------SVTVANTLVN 137

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KCGD                               F    K+F+ ++++++++W+++
Sbjct: 138 LYRKCGD-------------------------------FGAVYKVFDRISERNQVSWNSL 166

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG---ALDQGIWIHDHVKR 324
           I        ++ ALE F  M  + ++P  F L  V  AC++      L  G  +H +  R
Sbjct: 167 ISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLR 226

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                  ++ T LV MY K G+L  +  +    + +++ TWN ++  L  + +  +A+E 
Sbjct: 227 KGELNSFIINT-LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEY 285

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
             +M  E + PD  T + VL AC+H  M+  G +   Y  +   +D        +VD+  
Sbjct: 286 LREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYC 345

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
               +     V   M  +    +W A++     + + E+ E    + +EME
Sbjct: 346 NCKQVLSGCRVFDGM-FDRKIGLWNAMITG---YAQNEYDEEALLLFIEME 392



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 9/239 (3%)

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W  ++    +    +EA+  + +M    IKP  F    +L A A L  +D G  IH HV 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 324 RNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +    VD+V +   LV++Y KCG     +KVF+ +  +   +WN++I  L    + + A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHY--GCI 439
           E F  M  E + P   T   V  AC++  M +  L  +      YG+   E+  +    +
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLL--MGKQVHAYGLRKGELNSFIINTL 238

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHGEVEFGERLGKILLE-MEP 496
           V + G+ G LA ++ ++ S     +   W  +L + C+    +E  E L +++LE +EP
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 337/593 (56%), Gaps = 22/593 (3%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A  R    E A  +FNS  + +V  WN+++   ++  +      L+  M G D       
Sbjct: 46  AYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 105

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
                +   + EA +        +       DV   ++ +  YA  G + +AR++ D   
Sbjct: 106 VSGYARRGDMVEARR--------LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 157

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + + + WNA++  Y++   ++ AKELF     +N  S+N M++G+A+ G  EEA+ +F+ 
Sbjct: 158 ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT 217

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M  KD ++W+A++  Y++ G  +E L++F EM R      +   +CVL+ CA + AL+ G
Sbjct: 218 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
           + +H  + R    V   +G AL+ MY KCG ++ A   FE+M+ ++V +WN MI G A H
Sbjct: 278 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 337

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G   +A+E+F  M+    +PD IT   VL+AC+H+G++++G+     M   +G+  + EH
Sbjct: 338 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 397

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           Y C++DLLGRAG LAEA +++  MP EP++ +W ALLGA R H   E G    + + E+E
Sbjct: 398 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 457

Query: 496 PQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           P+N               +  D  KMR +M+ERG+K  PG S I+V   +H F  GD  H
Sbjct: 458 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 517

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
           P+ ++IY  L+ +  ++K  GY   +  VL D++EEEKE   KYHSEKLA+A+G +N  P
Sbjct: 518 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 577

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G  IRVIKNLRVC DCH+A K IS +  R I++RD  R+HHFR G CSC D+W
Sbjct: 578 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 161/367 (43%), Gaps = 71/367 (19%)

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           D + +N +I  +   G +  A+  F    +K+  S+N M++ + R GR EEAR LFN   
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEM-----------------QRDKIKPRK---- 296
           + D I+W+A++ GY + G   EA E+F+ M                 + D ++ R+    
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 124

Query: 297 ------FVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLGT-------------- 335
                 F  + V++  A  G L++   + D + +RN++  +A++                
Sbjct: 125 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELF 184

Query: 336 ------------ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
                        ++  YA+ G L+ A  VF+ M  K+  +W AM+   +  G +++ ++
Sbjct: 185 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVD- 441
           LF +M R     +R  FACVLS CA    ++ G+Q    + +  YG+       GC V  
Sbjct: 245 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGN 297

Query: 442 ----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
               +  + G + +A      M  E +   W  ++    +HG   FG+   +I   M   
Sbjct: 298 ALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG---FGKEALEIFDMMRTT 353

Query: 498 NRRCDDV 504
           + + DD+
Sbjct: 354 STKPDDI 360



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 123/256 (48%), Gaps = 26/256 (10%)

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           +++ +YN MIS  A  G    AR  F+   +KD ++W+ ++  Y ++G  +EA  +FN  
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
               +       + +++     G + +   + D +       D V    +V  YA+ G +
Sbjct: 64  TEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARRGDM 115

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLS 405
             A ++F+   +++VFTW A++ G A +G  ++A  +F  M      P+R  +++  +++
Sbjct: 116 VEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVA 169

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           A     M+D         ++++ + P   V  +  ++    +AG L EA+ V  +MP + 
Sbjct: 170 AYIQRRMMDEA-------KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QK 221

Query: 464 NAAVWEALLGACRKHG 479
           +A  W A+L A  + G
Sbjct: 222 DAVSWAAMLAAYSQGG 237


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 345/632 (54%), Gaps = 52/632 (8%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L T C T  +   + HA  +++G   D  V   L + +A S     +L + +      P 
Sbjct: 41  LLTGCAT-LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAAS--DRLDLTVTLLRLTPDPT 97

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
              + S + A          ++L SEM+G    P   T  +   AC        G  +HA
Sbjct: 98  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 154

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           +  K  L GD +V ++ + MYA                               + GD + 
Sbjct: 155 YAFKLALAGDSYVATALLGMYA-------------------------------RGGDADA 183

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A+ LF    D +     AM++ +A+ G  ++AR+LF+ M  KD I W+A+IDGYT+ G  
Sbjct: 184 ARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRP 243

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLGTA 336
            EAL +F  M R  + P +  +   L+A A LG  + G W+H +VK +  + ++A +GTA
Sbjct: 244 NEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTA 303

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY KCG L+ A  VF  +  K++  WNAMI G AMHG +  A+E+F +++ + + P 
Sbjct: 304 LIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 363

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  +L+AC+H+G++D G Q    M++ Y I P++EHYGC+VDLLGRAG + EA  ++
Sbjct: 364 DITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLV 423

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
            SM + P+  +W +LL ACR H  +  G+++   L+     N                 +
Sbjct: 424 QSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWE 483

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +VA++R +MK  GI+  PG S I+V   ++EF  GD SHP+  EIY ML+K+   +K +G
Sbjct: 484 EVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQG 543

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + P +  VL D+DE  KE A   HSEKLA+AFG I+T PG TI+++KNLR C DCH+  K
Sbjct: 544 HVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLK 603

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LISK+  R I+ RDR R+HHF +G C+C D+W
Sbjct: 604 LISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 345/632 (54%), Gaps = 52/632 (8%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L T C T  +   + HA  +++G   D  V   L + +A S     +L + +      P 
Sbjct: 40  LLTGCAT-LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAAS--DRLDLTVTLLRLTPDPT 96

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
              + S + A          ++L SEM+G    P   T  +   AC        G  +HA
Sbjct: 97  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHA 153

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           +  K  L GD +V ++ + MYA                               + GD + 
Sbjct: 154 YAFKLALAGDSYVATALLGMYA-------------------------------RGGDADA 182

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A+ LF    D +     AM++ +A+ G  ++AR+LF+ M  KD I W+A+IDGYT+ G  
Sbjct: 183 ARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRP 242

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLGTA 336
            EAL +F  M R  + P +  +   L+A A LG  + G W+H +VK +  + ++A +GTA
Sbjct: 243 NEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTA 302

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY KCG L+ A  VF  +  K++  WNAMI G AMHG +  A+E+F +++ + + P 
Sbjct: 303 LIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 362

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  +L+AC+H+G++D G Q    M++ Y I P++EHYGC+VDLLGRAG + EA  ++
Sbjct: 363 DITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLV 422

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
            SM + P+  +W +LL ACR H  +  G+++   L+     N                 +
Sbjct: 423 QSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWE 482

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +VA++R +MK  GI+  PG S I+V   ++EF  GD SHP+  EIY ML+K+   +K +G
Sbjct: 483 EVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQG 542

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + P +  VL D+DE  KE A   HSEKLA+AFG I+T PG TI+++KNLR C DCH+  K
Sbjct: 543 HVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLK 602

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LISK+  R I+ RDR R+HHF +G C+C D+W
Sbjct: 603 LISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 335/590 (56%), Gaps = 22/590 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    E A  +FNS  + +   WN+++   ++  +      L+  M G D          
Sbjct: 174 RNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSG 233

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
             +   + EA +        +       DV   ++ +  YA  G + +AR++ D   + +
Sbjct: 234 YARRGDMVEARR--------LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 285

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + WNA++  Y++   ++ AKELF     +N  S+N M++G+A+ G  EEA+ +F+ M  
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD ++W+A++  Y++ G  +E L++F EM R      +   +CVL+ CA + AL+ G+ +
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  + R    V   +G AL+ MY KCG ++ A   FE+M+ ++V +WN MI G A HG  
Sbjct: 406 HGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFG 465

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+E+F  M+    +PD IT   VL+AC+H+G++++G+     M   +G+  + EHY C
Sbjct: 466 KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTC 525

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGRAG LAEA +++  MP EP++ +W ALLGA R H   E G    + + E+EP+N
Sbjct: 526 MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN 585

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          +  D  KMR +M+ERG+K  PG S I+V   +H F  GD  HP+ 
Sbjct: 586 AGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEK 645

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           ++IY  L+ +  ++K  GY   +  VL D++EEEKE   KYHSEKLA+A+G +N  PG  
Sbjct: 646 EKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRP 705

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRVIKNLRVC DCH+A K IS +  R I++RD  R+HHFR G CSC D+W
Sbjct: 706 IRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 205/441 (46%), Gaps = 38/441 (8%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L    AN R     LA  +F ++ +P+ + +N++L A    +       L+ EM   DS 
Sbjct: 76  LAGYSANGRLP---LAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDS- 131

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
               TY  +      + A+   V +  H        D    +  +  Y   G V +AR +
Sbjct: 132 ---VTYNVMIS----SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL 184

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            +  ++ D I WNAL+ GY++ G +  A+ELF     ++  S+N M+SG+AR G   EAR
Sbjct: 185 FNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           +LF+    +D  TW+A++ GY ++G  +EA  VF+ M +R+ +       + ++AA    
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQR 299

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             +D+   + + +     C +      ++  YA+ G L+ A  VF+ M  K+  +W AM+
Sbjct: 300 RMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 355

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYG 428
              +  G +++ ++LF +M R     +R  FACVLS CA    ++ G+Q    + +  YG
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 429 IDPEVEHYGCIVD-----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +       GC V      +  + G + +A      M  E +   W  ++    +HG   F
Sbjct: 416 V-------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG---F 464

Query: 484 GERLGKILLEMEPQNRRCDDV 504
           G+   +I   M   + + DD+
Sbjct: 465 GKEALEIFDMMRTTSTKPDDI 485



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 142/326 (43%), Gaps = 43/326 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G V  A ++     +     +NA++ GY   G +  A  LF++    +  SYN ++   A
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                 +AR LF+EM  +D +T++ +I  +   G    A   F+      + P K  +S 
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD------LAPEKDAVSW 165

Query: 302 --VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +LAA    G +++   + +    +    DA+   AL+  Y + G++  A ++F+ M  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFN----SRTEWDAISWNALMSGYVQWGKMSEARELFDRMPG 221

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +WN M+ G A  G   +A  LF       +R D  T+  V+S  A  GM++   + 
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLF---DAAPVR-DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 420 LTYM------------------------QQMYGIDP--EVEHYGCIVDLLGRAGYLAEAE 453
              M                        ++++ + P   V  +  ++    +AG L EA+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 454 EVISSMPMEPNAAVWEALLGACRKHG 479
            V  +MP + +A  W A+L A  + G
Sbjct: 338 AVFDTMP-QKDAVSWAAMLAAYSQGG 362



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 24/282 (8%)

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + +VI  N  I  +++ G +  A+ LF +   ++T +YNAM++G++  GR   A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQ 314
           +   D  +++ ++          +A  +F+EM  RD +       + ++++ A+ G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV-----TYNVMISSHANHGLVSL 149

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
                D         DAV    ++  Y + GR++ A  +F      +  +WNA++ G   
Sbjct: 150 ARHYFDLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQ 205

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
            G+  +A ELF +M       D +++  ++S  A  G        +   ++++   P  +
Sbjct: 206 WGKMSEARELFDRMPGR----DVVSWNIMVSGYARRG-------DMVEARRLFDAAPVRD 254

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           V  +  +V    + G L EA  V  +MP E NA  W A++ A
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA 295


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/650 (35%), Positives = 360/650 (55%), Gaps = 88/650 (13%)

Query: 29  FSQKTILDILNT--------KCHTSWQHLKQAHAVILKSGHFQD-HYVSGTLVKCHANSR 79
           F++ + +D +NT        KC+ S + L Q  A  +KS H +D  +V+  +  C  +  
Sbjct: 18  FTKHSKIDTVNTQNPILLISKCN-SLRELMQIQAYAIKS-HIEDVSFVAKLINFCTESPT 75

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
            S+   A  +F ++ +P++ ++NS+ R       P  V SL+ E++     P+ +T+P++
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            KAC++ +A +EG Q+H   +K GL  +V         Y C                   
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNV---------YVC------------------- 167

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
                LI+ Y +C D++ A+ +F    +     YNAM                       
Sbjct: 168 ---PTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM----------------------- 201

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
                   I GY +     EAL +F EMQ   +KP +  L  VL++CA LG+LD G WIH
Sbjct: 202 --------ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIH 253

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            + K++S C    + TAL+DM+AKCG LD A  +FE M+ K+   W+AMI   A HG+A+
Sbjct: 254 KYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAE 313

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            ++ +F +M+ E ++PD ITF  +L+AC+H G ++ G +  + M   +GI P ++HYG +
Sbjct: 314 KSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSM 373

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME---- 495
           VDLL RAG L +A E I  +P+ P   +W  LL AC  H  ++  E++ + + E++    
Sbjct: 374 VDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHG 433

Query: 496 ----------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                      +N++ + V  +RK+MK+R     PG S I+VN V+HEF +GDG      
Sbjct: 434 GDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATT 493

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +++  L +++++LK+ GY P++S V+  +++++EKE   +YHSEKLAI FG +NT PG T
Sbjct: 494 KLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV+KNLRVC DCH+A KLIS +F R +++RD  R+HHF +GKCSC DFW
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/623 (36%), Positives = 342/623 (54%), Gaps = 80/623 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +  KQ HA +LK   +++ + +  LV   A S + + + A  +F  + +P  F +N+++R
Sbjct: 2   EEFKQVHAQVLK---WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIR 58

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +        + LY EM+    + + FTYP +FKA                      C 
Sbjct: 59  GYVNVMNMENALFLYYEMLERGVESDNFTYPALFKA----------------------CA 96

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            +     G+Q++           I   G + D+   N+LI+ Y KC              
Sbjct: 97  SLRSIEEGMQIHG---------YIFKRGLEGDLFVQNSLINMYGKC-------------- 133

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                            G+ E +  +F  M+ +D  +WSAII  +   G + E L VF E
Sbjct: 134 -----------------GKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGE 176

Query: 287 MQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M R+   +P + +L  VL+AC  LGALD G   H  + RN   ++ ++ T+L+DMY KCG
Sbjct: 177 MSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCG 236

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++    +F+ M  K   +++ MI GLAMHGR  +A+++F  M  E ++PD + +  VLS
Sbjct: 237 CIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLS 296

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC HAG++D GLQ    M+  +GI+P ++HYGCIV L+GRAG L +A E I SMP++PN 
Sbjct: 297 ACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNE 356

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            VW  LL AC+ H  +E GE   K L E+   N              +R +DVAK+R  M
Sbjct: 357 VVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEM 416

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
             +G    PG S++ V   I++F + D SHPQ K +Y M+ ++  +LK EGYSP++SQVL
Sbjct: 417 ARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVL 476

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD+DEEEK    K HS+KLA+AF  I+T  GA IR+ +NLR+C DCH+ TKLIS +++R+
Sbjct: 477 FDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQRE 536

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I VRDR R+HHF++G CSC D+W
Sbjct: 537 ITVRDRNRFHHFKDGTCSCRDYW 559


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 353/661 (53%), Gaps = 55/661 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +HL   HA  +  G+  + +V   LV  +   +FS    A KVF+ + + +  +WN+++ 
Sbjct: 125 KHLMLLHAHSIIDGYGSNVFVGSALVDLYC--KFSRVVYARKVFDGMPERDTVLWNTMIN 182

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +++      I L+ EMV    + +  T   V  A +  +  K G+ +    +K G   
Sbjct: 183 GLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGF 242

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---- 222
             +V +  I +Y+  G VN AR +    ++ D+I +NA+I G+   G  E + +LF    
Sbjct: 243 CDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELL 302

Query: 223 -----------------------------------KSTKDKNTGSYNAMISGFARFGRFE 247
                                              KS    N     A  + + +    +
Sbjct: 303 FSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEID 362

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR LF+E  +K  + W+A+I GYT++G  + A+ +F EM + +  P    ++ +L+ACA
Sbjct: 363 LARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACA 422

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LG+L  G W+H  +K  ++  +  + TALVDMYAKCG +  AW++F+ M  K   TWN 
Sbjct: 423 QLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNT 482

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G  +HG   +A++L+ +M      P  +TF  VL AC+HAG++  G +    M   Y
Sbjct: 483 MIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKY 542

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I+P +EHY C+VD+LGR+G L +A E I  MP+EP  AVW  LLGAC  H + +     
Sbjct: 543 RIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLA 602

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + L E++P +              R     A +R+++K+R +  +PG ++I+VNG  H 
Sbjct: 603 SERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHV 662

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F +GD SH    +IY  L+K+  K++  GY   +   L D++EEEKE A   HSEKLAIA
Sbjct: 663 FVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIA 722

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I T+PG  IR+IKNLRVC DCH+ATK ISK+ +R I+VRD  R+HHF++G CSC D+
Sbjct: 723 FGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDY 782

Query: 654 W 654
           W
Sbjct: 783 W 783



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 201/495 (40%), Gaps = 105/495 (21%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFE 84
           + + S+ T+  ++N    +++ HL Q HA  + +G+  D     TL K       FS   
Sbjct: 7   SGKLSRNTLFSLINKA--STFPHLAQTHAQFILNGYRFD---LATLTKLTQKLFDFSATR 61

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKAC 143
            A  +F SV KP++F++N ++R    ++ P   ISLY+ +    +  P+ FTY     AC
Sbjct: 62  HARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC 121

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           S    DK  + +HAH +                                DG  S+V   +
Sbjct: 122 S---NDKHLMLLHAHSII-------------------------------DGYGSNVFVGS 147

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
           AL+D Y K                               F R   ARK+F+ M ++D + 
Sbjct: 148 ALVDLYCK-------------------------------FSRVVYARKVFDGMPERDTVL 176

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+ +I+G  K+  + +++++F EM  D ++     ++ VL A A L  L  G+ I     
Sbjct: 177 WNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +        + T L+ +Y+KCG ++ A  +F  +   ++  +NAMI G   +G  + +++
Sbjct: 237 KIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVK 296

Query: 384 LFFKM--QREKMRPDRIT-------------FACVLSA-CAHAGM------------IDR 415
           LF ++    E++    I               AC +   C  +G+            I  
Sbjct: 297 LFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 416 GLQALTYMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEA 470
            L  +   + ++   PE  V  +  ++    + G    A  +   M      PNA     
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 471 LLGACRKHGEVEFGE 485
           +L AC + G + FG+
Sbjct: 417 ILSACAQLGSLSFGK 431



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 19/289 (6%)

Query: 30  SQKTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           S  TI+ ++    H+ + HL  A   H   +KSG   +  VS      +  ++ +  +LA
Sbjct: 309 SSSTIVGLI--PLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY--NKLNEIDLA 364

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
             +F+   +  V  WN+++    ++      ISL+ EM+  +  PN  T  T+  AC+  
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            +   G  VH  +    L  +++V ++ + MYA  G +++A Q+ D  S+ + + WN +I
Sbjct: 425 GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMI 484

Query: 207 DGYLKCGDIEGAKELFKST----KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
            GY   G    A +L+        + +  ++ +++   +  G   E  ++F+ M +K  I
Sbjct: 485 FGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRI 544

Query: 263 T-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
                 ++ ++D   + G  ++ALE   +M    ++P   V   +L AC
Sbjct: 545 EPLIEHYACMVDILGRSGQLEKALEFIKKM---PVEPGPAVWGTLLGAC 590


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/480 (43%), Positives = 314/480 (65%), Gaps = 20/480 (4%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKE-LFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           G+ +  +  N+L+  Y   G ++ A+  L+      +  S+N M+SG+ + G    AR++
Sbjct: 108 GALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREV 167

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F  M +++ ++WSA++D   + G + EAL VF+ M R++ +P   VL  VL ACA LGA+
Sbjct: 168 FARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAV 227

Query: 313 DQGIWIHDHVKRNSICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           ++G W+H +++  S      + +L TALVDMY KCG ++ AW+VF+ +  ++V  WNAMI
Sbjct: 228 ERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMI 287

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           GGLAM+G  + A+ELF +M ++   P+  TF  VL AC H G +D G +    MQ  YGI
Sbjct: 288 GGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGI 346

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P+ EHYGC+ DLLGRAG + EAE ++  MPMEP+A+ W AL+ +C+ H ++  GER+GK
Sbjct: 347 KPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGK 406

Query: 490 ILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L+E+EP               N R ++   +R++M++RG K   G S I++NG++HEF 
Sbjct: 407 RLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFI 466

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETAPKYHSEKLAIAF 594
           +GD  HP  ++IY +L+ I  +L++ GY  ++SQV+ D+D+EE K  A  YHSE+LA+AF
Sbjct: 467 SGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAF 526

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G +N   G  IR++KNLRVC DCH  +KL+SK+++R+IIVRDR R+H FR+G CSCND+W
Sbjct: 527 GILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 148/332 (44%), Gaps = 23/332 (6%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           K + S   L +A  V+   G   D     T+V  +      +   A +VF  + + N+  
Sbjct: 121 KLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKG--GDLGAAREVFARMPERNLVS 178

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W++++ AC+   E    + ++  M+  + +P+     +V KAC+   A + G  VH ++ 
Sbjct: 179 WSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLE 238

Query: 161 K---NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
                G  G++ ++++ + MY   GC+  A Q+ D   + DV+ WNA+I G    G  E 
Sbjct: 239 TGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGER 298

Query: 218 AKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIID 269
           A ELF+    K    N  ++ A++      GR +E +++F  M D         +  + D
Sbjct: 299 ALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLAD 358

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
              + G  +EA  +  +M    ++P       ++++C     +   I + + V +  I +
Sbjct: 359 LLGRAGNVEEAEALLLDM---PMEPHASQWGALMSSC----QMHNDINVGERVGKRLIEL 411

Query: 330 DAVLG---TALVDMYAKCGRLDMAWKVFEDMK 358
           +   G     L ++YA  GR + A  + + M+
Sbjct: 412 EPYDGGRYVVLFNLYAVNGRWEEARTIRQMME 443



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A +VF+ VH+ +V +WN+++     +    R + L+  M+     PN+ T+  V  A
Sbjct: 265 MEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCA 324

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ-ILDDGSKSDVIC 201
           C+ T    EG +V   +   G+            +    G V +A   +LD   +     
Sbjct: 325 CTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ 384

Query: 202 WNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           W AL+       DI   + + K     +  + G Y  + + +A  GR+EEAR +   M D
Sbjct: 385 WGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMED 444

Query: 259 K 259
           +
Sbjct: 445 R 445


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 333/586 (56%), Gaps = 21/586 (3%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ +   NV  +N ++R+ + +      + ++  M      P+ +TYP V KACS++  
Sbjct: 93  IFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGN 152

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
              G+Q+H  VVK GL  ++++ +  + MY     ++ AR++LD+    D++ WN+++ G
Sbjct: 153 LWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAG 212

Query: 209 YLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFG--RFEEARKLFNEMNDKDEI 262
           Y + G    A +L +  +D     + G+  +++              + +F ++ +K  I
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLI 272

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+ +I  Y  +    EA++++ +MQ   ++P    +S VL AC  L A   G  IH++V
Sbjct: 273 SWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYV 332

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +R  +  + +L  AL+DMYAKCG L  A  VF+ M  ++V +W +MI    M G+  DA+
Sbjct: 333 ERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAV 392

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            LF KM+     PD I F  VL+AC+HAG++D G      M + YGI P +EHY C+VDL
Sbjct: 393 ALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDL 451

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--- 499
           LGRAG + EA  +   MPMEPN  VW +LL ACR +  +         L ++ P+     
Sbjct: 452 LGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYY 511

Query: 500 -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                      R  DV  +R +M  +GIK  PG+S +++N  ++ F  GD SH Q KEIY
Sbjct: 512 VLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIY 571

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
             L  ++ ++K  GY P +   L D++EE+KE     HSEKLAI F  +NT PG+TIR+ 
Sbjct: 572 KALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRIT 631

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KN+RVC DCH ATKLISK+ +R+II+RD  R+HHFR+G CSC D+W
Sbjct: 632 KNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 129/257 (50%), Gaps = 10/257 (3%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  +A  G     R +F+E+ DK+ + ++ +I  Y  +G Y++AL VF  M      P 
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            +   CVL AC+  G L  G+ IH  V +  + ++  +G  LV MY KC  LD A +V +
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +M  +++ +WN+M+ G A +GR +DA++L  +M+  K++PD  T   +L A     + + 
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA-----VTNT 251

Query: 416 GLQALTYMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEA 470
               + Y++ M+    E  +  +  ++ +        EA ++   M    +EP+A    +
Sbjct: 252 SCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISS 311

Query: 471 LLGACRKHGEVEFGERL 487
           +L AC        G R+
Sbjct: 312 VLPACGDLSAAVLGRRI 328



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 153/354 (43%), Gaps = 37/354 (10%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY----------------VSGTLVK 73
           + + +LD +  +   SW  +   +A   ++G F D                    G+L+ 
Sbjct: 190 AARRVLDEMPGRDMVSWNSMVAGYA---QNGRFNDALKLCREMEDLKLKPDAGTMGSLLP 246

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
              N+   N      +F  + + ++  WN ++   + +  P   + LY +M     +P+ 
Sbjct: 247 AVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDA 306

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
            +  +V  AC    A   G ++H +V +  L  ++ ++++ I MYA  GC+ +AR + D 
Sbjct: 307 VSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQ 366

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-TGSYNAMISGFA---RFGRFEEA 249
               DV+ W ++I  Y   G  + A  LFK  +D   T  + A +S  A     G  +E 
Sbjct: 367 MMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEG 426

Query: 250 RKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           R  FN M +   IT     ++ ++D   + G   EA  +  +M    ++P + V   +L+
Sbjct: 427 RYCFNLMAEYG-ITPGIEHYNCMVDLLGRAGKIDEAYHLTRQM---PMEPNERVWGSLLS 482

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           AC    +++  +   DH+ + +          L ++YAK GR    W+  E ++
Sbjct: 483 ACRVYSSMNIALLAADHLFQLAPEQSGYY-VLLSNIYAKAGR----WQDVETVR 531



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 19/201 (9%)

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           LG  L+  YA CG       +F+++  K V  +N MI     +G   DA+ +F  M  + 
Sbjct: 73  LGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQG 132

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
             PD  T+ CVL AC+ +G +  GLQ    + ++ G+D  +     +V + G+  +L  A
Sbjct: 133 FYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKL-GLDMNLYIGNGLVSMYGKCKWLDAA 191

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL--LEMEPQ------------N 498
             V+  MP   +   W +++    ++G      +L + +  L+++P             N
Sbjct: 192 RRVLDEMPGR-DMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN 250

Query: 499 RRCDDVAKMRKL---MKERGI 516
             CD+V  ++ +   +KE+ +
Sbjct: 251 TSCDNVLYVKDMFVKLKEKSL 271


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/686 (34%), Positives = 371/686 (54%), Gaps = 84/686 (12%)

Query: 18  EISATNIPTSEFSQKTIL-DILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           E+    I  S+F+   +L  +  T+C  +    K+ H+ I+K G   +  VS +L+  +A
Sbjct: 136 EMMREGIEPSQFTLTNVLASVAATRCLETG---KKVHSFIVKLGLRGNVSVSNSLLNMYA 192

Query: 77  -----------------------------NSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
                                        + +    +LA+  F  + + ++  WNS++  
Sbjct: 193 KCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISG 252

Query: 108 CLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
             +     R + ++S+M+  DS   P++FT  +V  AC+  E    G Q+H+H+V  G  
Sbjct: 253 YNQRGYDLRALDMFSKMLR-DSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGF- 310

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--K 223
            D+    SGI +                         NALI  Y +CG +E A+ L   +
Sbjct: 311 -DI----SGIVL-------------------------NALISMYSRCGGVETARRLIEQR 340

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
            TKD     + A++ G+ + G   EA+ +F+ + D+D + W+A+I GY + G Y EA+ +
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINL 400

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  M  ++ +P  + L+ +L+  +SL +L  G  IH    ++       +  AL+ MYAK
Sbjct: 401 FRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAK 460

Query: 344 CGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
            G +  A + F+ ++  ++  +W +MI  LA HG A++A+ELF  M  E +RPD IT+  
Sbjct: 461 AGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVG 520

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           V SAC HAG++++G Q    M+ +  I P + HY C+VDL GRAG L EA+E I  MP+E
Sbjct: 521 VFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIE 580

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           P+   W +LL ACR +  ++ G+   + LL +EP+N               + ++ AK+R
Sbjct: 581 PDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIR 640

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MK+  +K   G S I+V   +H F   DG HPQ  EIY+ +KKI +++K  GY P+++
Sbjct: 641 KSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTA 700

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL D++EE KE   ++HSEKLAIAFG I+T    T+R++KNLRVC DCH+A K ISK+ 
Sbjct: 701 SVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 760

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+IIVRD  R+HHF++G CSC D+W
Sbjct: 761 GREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 214/508 (42%), Gaps = 105/508 (20%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++KSG     Y+   L+  ++ + ++    A K+F+ +     F WN+VL A  +  
Sbjct: 37  HCRVIKSGLVFSVYLMNNLMNVYSKTGYALH--ARKLFDEMPLRTAFSWNTVLSAYAKRG 94

Query: 113 E-----------------PW--------------RVISLYSEMVGVDSKPNKFTYPTVFK 141
           +                  W              + I +  EM+    +P++FT   V  
Sbjct: 95  DMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLA 154

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           + + T   + G +VH+ +VK GL G+V V +S + MYA  G    A+ + D     D+  
Sbjct: 155 SVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISS 214

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           WNA+I  +++ G ++ A   F+   +++  ++N+MIS                       
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMIS----------------------- 251

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHD 320
                   GY + GY   AL++F++M RD  + P +F L+ VL+ACA+L  L  G  IH 
Sbjct: 252 --------GYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWK---------------------------- 352
           H+      +  ++  AL+ MY++CG ++ A +                            
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 353 -----VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
                +F+ +K ++V  W AMI G   HG   +AI LF  M  E+ RP+  T A +LS  
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVA 423

Query: 408 AHAGMIDRGLQ---ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +    +  G Q   +     ++Y +         ++ +  +AG +  A      +  E +
Sbjct: 424 SSLASLGHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGSITSASRAFDLIRCERD 479

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILL 492
              W +++ A  +HG  E    L + +L
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETML 507



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 167/389 (42%), Gaps = 96/389 (24%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH  V+K+GL   V++ ++ + +Y+  G    AR++ D+        WN ++  Y K GD
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           ++ + E F     +++ S+  MI G+   G+                             
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQ----------------------------- 126

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
             Y +A+ +  EM R+ I+P +F L+ VLA+ A+   L+ G  +H  + +  +  +  + 
Sbjct: 127 --YHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVS 184

Query: 335 TALVDMYAKC-------------------------------GRLDMAWKVFEDMKMKEVF 363
            +L++MYAKC                               G++D+A   FE M  +++ 
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITFACVLSACA-----------HAG 411
           TWN+MI G    G    A+++F KM R+ M  PDR T A VLSACA           H+ 
Sbjct: 245 TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSH 304

Query: 412 MIDRG-------LQALTYM--------------QQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           ++  G       L AL  M              +Q    D ++E +  ++D   + G + 
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHG 479
           EA+ +  S+  + +   W A++    +HG
Sbjct: 365 EAKNIFDSLK-DRDVVAWTAMIVGYEQHG 392


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 338/606 (55%), Gaps = 37/606 (6%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHN------------EPWRVISLYSEMVGVDSKPNK 133
           A +VF+ + + N   WN++L A ++++            E W ++S    + G   K   
Sbjct: 171 ARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKI 230

Query: 134 FTYPTVFKACSITE-----------ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
                 F +  + +           A    +     +       DV   ++ +  Y    
Sbjct: 231 VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNR 290

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
            V +AR++ D   + + + WNA++ GY++   +E AKELF     +N  ++N MI+G+A+
Sbjct: 291 MVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQ 350

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G+  EA+ LF++M  +D ++W+A+I GY++ G+  EAL +F  M+R+  +  +   S  
Sbjct: 351 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSA 410

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+ CA + AL+ G  +H  + +        +G AL+ MY KCG ++ A  +F++M  K++
Sbjct: 411 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 470

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +WN MI G + HG  ++A+  F  M+RE ++PD  T   VLSAC+H G++D+G Q    
Sbjct: 471 VSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHT 530

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M Q YG+ P  +HY C+VDLLGRAG L EA  ++ +MP EP+AA+W  LLGA R HG  E
Sbjct: 531 MTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 590

Query: 483 FGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             E     +  MEP+N               R  DV K+R  M+++G+K  PG S I++ 
Sbjct: 591 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 650

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
              H F  GD  HP+  EI+  L+ +  ++K  GY   +S VL D++EEEKE   +YHSE
Sbjct: 651 NKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSE 710

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LA+A+G +    G  IRVIKNLRVCEDCH+A K ++KV  R II+RD  R+HHF++G C
Sbjct: 711 RLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSC 770

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 771 SCGDYW 776



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 169/361 (46%), Gaps = 48/361 (13%)

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           YA  GCV+ AR++ D   + + + WNAL+  Y++   +E A  LF S ++    S+N ++
Sbjct: 162 YAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLL 221

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
            GF +  +  EAR+ F+ M  +D ++W+ II GY ++G   EA ++F+E     +    F
Sbjct: 222 GGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV----F 277

Query: 298 VLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLG---------------------- 334
             + +++       +++   + D + +RN +  +A+L                       
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRN 337

Query: 335 ----TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
                 ++  YA+CG++  A  +F+ M  ++  +W AMI G +  G + +A+ LF  M+R
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG-IDPEVEHYGCIVD-----LLG 444
           E  R +R +F+  LS CA        + AL   +Q++G +       GC V      +  
Sbjct: 398 EGGRLNRSSFSSALSTCAD-------VVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 450

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           + G + EA ++   M  + +   W  ++    +HG   FGE   +    M+ +  + DD 
Sbjct: 451 KCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG---FGEEALRFFESMKREGLKPDDA 506

Query: 505 A 505
            
Sbjct: 507 T 507



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 162/325 (49%), Gaps = 27/325 (8%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  Y   G    AR + D+  + D++ WN +I GY++  ++  A+ELF+   +++  S+N
Sbjct: 97  ISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWN 156

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            ++SG+A+ G  ++AR++F+ M +K++++W+A++  Y ++   +EA  +F   +   +  
Sbjct: 157 TILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL-- 214

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
                +C+L        + +     D +K      D V    ++  YA+ G +D A ++F
Sbjct: 215 --VSWNCLLGGFVKKKKIVEARQFFDSMK----VRDVVSWNTIITGYAQNGEIDEARQLF 268

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHAGM 412
           ++  + +VFTW AM+ G   +   ++A ELF +M      P+R  +++  +L+       
Sbjct: 269 DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM------PERNEVSWNAMLAGYVQGER 322

Query: 413 IDRGLQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           ++         ++++ + P   V  +  ++    + G ++EA+ +   MP + +   W A
Sbjct: 323 VEMA-------KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAA 374

Query: 471 LLGACRKHGEVEFGERLGKILLEME 495
           ++    + G      RL  +L+E E
Sbjct: 375 MIAGYSQSGHSYEALRL-FVLMERE 398



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 28/306 (9%)

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
           L     SD+  WN  I  Y++ G    A  +FK     ++ SYNAMISG+ R G FE AR
Sbjct: 51  LPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELAR 110

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACAS 308
            LF+EM ++D ++W+ +I GY ++    +A E+F  M      P + V S   +L+  A 
Sbjct: 111 MLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERM------PERDVCSWNTILSGYAQ 164

Query: 309 LGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            G +D    + D + ++N +  +A+L       Y +  +L+ A  +F   +   + +WN 
Sbjct: 165 NGCVDDARRVFDRMPEKNDVSWNALLSA-----YVQNSKLEEACVLFGSRENWALVSWNC 219

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           ++GG     +  +A + F  M   K+R D +++  +++  A  G ID         +Q++
Sbjct: 220 LLGGFVKKKKIVEARQFFDSM---KVR-DVVSWNTIITGYAQNGEIDEA-------RQLF 268

Query: 428 GIDP--EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
              P  +V  +  +V    +   + EA E+   MP E N   W A+L    +   VE  +
Sbjct: 269 DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP-ERNEVSWNAMLAGYVQGERVEMAK 327

Query: 486 RLGKIL 491
            L  ++
Sbjct: 328 ELFDVM 333



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 27/225 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  ++K G+    +V   L+  +   +  + E A  +F  +   ++  WN+++    
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYC--KCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 481

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      +  +  M     KP+  T   V  ACS T    +G Q    + +     D  
Sbjct: 482 RHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQ-----DYG 536

Query: 170 VKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKEL 221
           V+ +  Q YAC        G + +A  ++ +   + D   W  L    L    + G  EL
Sbjct: 537 VRPNS-QHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTL----LGASRVHGNTEL 591

Query: 222 FKSTKDK-------NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            ++  DK       N+G Y  + + +A  GR+ +  KL   M DK
Sbjct: 592 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 348/647 (53%), Gaps = 60/647 (9%)

Query: 66  YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV 125
           YVS  LV  +A  +    + A +VF+ +HK +V  WNS++     H   +  ++     +
Sbjct: 155 YVSTALVDFYA--KCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM 212

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
             D  PN  T   V  A +   + + G ++H   V+ G  GDV V +  + +Y    C++
Sbjct: 213 QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCID 272

Query: 186 KARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELF---------------------- 222
            AR+I D  G   + + W+A++  Y+ C  +  A ELF                      
Sbjct: 273 YARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVI 332

Query: 223 ---KSTKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEI 262
               +  D +TG+                  N ++S +A+ G    A + FNEM+ +D +
Sbjct: 333 RVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAV 392

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +++AII GY ++G  +E L +F EMQ   I P K  L+ VL ACA L  L  G   H + 
Sbjct: 393 SFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYA 452

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
                  D ++  AL+DMYAKCG++D A KVF+ M  + + +WN MI    +HG   +A+
Sbjct: 453 IICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEAL 512

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            LF  MQ E ++PD +TF C++SAC+H+G++  G      M Q +GI P +EHY C+VDL
Sbjct: 513 LLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDL 572

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--- 499
           L RAG   E    I  MP+EP+  VW ALL ACR +  VE GE + K + ++ P++    
Sbjct: 573 LSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNF 632

Query: 500 -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD-GSHPQVKEI 547
                      R DD A++R   KE+G + +PG S I+++GV+H F  G   SHPQ+ +I
Sbjct: 633 VLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQI 692

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
              L +++ ++K  GY   SS V  D++EEEKE    YHSEKLAIAFG ++  P   I V
Sbjct: 693 SNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIV 752

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLRVC DCH+A K IS V KRDI VRD  R+HHF++G C+C DFW
Sbjct: 753 TKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 228/471 (48%), Gaps = 52/471 (11%)

Query: 81  SNFELALKVFNSV-HKP-NVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYP 137
           S  ++A  VF+ + H+P NV +WN ++RA    N P+   I LY +M+G    PN+FT+P
Sbjct: 65  SELKIARHVFDKMPHRPKNVVLWNLLIRA-YAWNGPYEEAIDLYYKMLGYGITPNRFTFP 123

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V KACS  +   EG ++H  + +  L  +V+V ++ +  YA  GC++ A+++ D   K 
Sbjct: 124 FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR 183

Query: 198 DVICWNALIDGY-LKCGDIEGAKELFKSTKDK------------------NTGSYNAMIS 238
           DV+ WN++I G+ L  G  +    L    ++                   N+  +   I 
Sbjct: 184 DVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIH 243

Query: 239 GFA-----------------RFGR---FEEARKLFNEMND-KDEITWSAIIDGYTKDGYY 277
           GF                   +G+    + AR++F+ M   K+E+TWSA++  Y    + 
Sbjct: 244 GFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFM 303

Query: 278 KEALEVFNE---MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           +EALE+F +   ++ D I      L+ V+  CA+L  L  G  +H +  ++   +D ++G
Sbjct: 304 REALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVG 363

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             L+ MYAKCG ++ A + F +M +++  ++ A+I G   +G +++ + +F +MQ   + 
Sbjct: 364 NTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGIN 423

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P++ T A VL ACAH   +  G  +  Y   + G   +      ++D+  + G +  A +
Sbjct: 424 PEKATLASVLPACAHLAGLHYGSCSHCY-AIICGFTADTMICNALIDMYAKCGKIDTARK 482

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
           V   M  +     W  ++ A   HG    G     +   M+ +  + DDV 
Sbjct: 483 VFDRMH-KRGIVSWNTMIIAYGIHG---IGLEALLLFDNMQSEGLKPDDVT 529



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 29/317 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   +KSG   D  V  TL+  +A     N   A++ FN +   +   + +++   +++ 
Sbjct: 348 HCYAIKSGFVLDLMVGNTLLSMYAKCGIING--AMRFFNEMDLRDAVSFTAIISGYVQNG 405

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                + ++ EM      P K T  +V  AC+       G   H + +  G   D  + +
Sbjct: 406 NSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICN 465

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG- 231
           + I MYA  G ++ AR++ D   K  ++ WN +I  Y   G    A  LF + + +    
Sbjct: 466 ALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKP 525

Query: 232 ---SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
              ++  +IS  +  G   E +  FN M     I      ++ ++D  ++ G +K   EV
Sbjct: 526 DDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFK---EV 582

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-------TA 336
            + +++  ++P   V   +L+AC     ++ G  +   +++        LG         
Sbjct: 583 HSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQK--------LGPESTGNFVL 634

Query: 337 LVDMYAKCGRLDMAWKV 353
           L +MY+  GR D A +V
Sbjct: 635 LSNMYSAVGRWDDAAQV 651



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKR-------NSICVDAVLGTALVDMYAKCGRLDMAWK 352
           + +L +C    +L +G  IH H+ +        ++    V    LVD+Y  C  L +A  
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72

Query: 353 VFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           VF+ M  + K V  WN +I   A +G  ++AI+L++KM    + P+R TF  VL AC+  
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
                G +    ++++  ++  V     +VD   + G L +A+EV   M  + +   W +
Sbjct: 133 KEASEGREIHCDIKRLR-LESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWNS 190

Query: 471 LLGACRKHGEVEFGERLGKILLEME 495
           ++     H E  + E + ++L++M+
Sbjct: 191 MISGFSLH-EGSYDE-VARLLVQMQ 213


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/538 (39%), Positives = 314/538 (58%), Gaps = 72/538 (13%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PNKFTYP V KAC+       G  VH  V+K G   +V+V+                   
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQ------------------- 48

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                       N L+  Y  C   EG  E                            AR
Sbjct: 49  ------------NTLVHMYCCCRGGEGGIEF---------------------------AR 69

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F+EM   D ++WSA+I GY + G   +A+ +F EMQ   + P +  +  VL+AC  LG
Sbjct: 70  KVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLG 129

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL+ G W+  +V++  +  +  L  AL+DM+AKCG +D A  +F  M+ + + +W ++IG
Sbjct: 130 ALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIG 189

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLAMHGR  +A+ +F +M R  + PD + F  +LSAC+H+G++D+G +    M++ + I 
Sbjct: 190 GLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIV 249

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHYGC+VD+L RAG + EA + +  MP++PN  VW  L+ ACR HGE++ GE++ + 
Sbjct: 250 PKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQ 309

Query: 491 LLEMEPQNRR-----CDDVAKM---------RKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L+  EP +        +  AKM         R+ M  +G+K  PGS+MI+++  I+EF  
Sbjct: 310 LIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVA 369

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SH Q KEIY M+ ++ +++K  GY P +++VL DID+E+KE     HSEKLAIAF  
Sbjct: 370 GDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFAL 429

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG  IR++KNLRVC+DCHSA+K ISK++ R+I+VRDR R+HHF+NG CSC DFW
Sbjct: 430 LNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC-- 344
           ++R K+ P KF    VL ACA +G L+ G  +H  V +     +  +   LV MY  C  
Sbjct: 2   LERKKL-PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 345 --GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
             G ++ A KVF++M   +  +W+AMIGG    GR+ DAI LF +MQ + + PD IT   
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC   G ++ G    +Y+++   +   VE    ++D+  + G + +A  +  SM  E
Sbjct: 121 VLSACTGLGALELGKWVESYVEKER-VQKNVELSNALIDMFAKCGDVDKATNLFRSM-RE 178

Query: 463 PNAAVWEALLGACRKHG 479
            N   W +++G    HG
Sbjct: 179 RNIVSWTSVIGGLAMHG 195



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 15/322 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           K  H  ++K G   +  V  TLV   C         E A KVF+ ++K +   W++++  
Sbjct: 30  KSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGG 89

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +        I+L+ EM      P++ T  +V  AC+   A + G  V ++V K  +  +
Sbjct: 90  YVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKN 149

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-DIEGA---KELFK 223
           V + ++ I M+A  G V+KA  +     + +++ W ++I G    G  +E     +E+ +
Sbjct: 150 VELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVR 209

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYK 278
           S    +   +  ++S  +  G  ++ ++ F+ M     I      +  ++D   + G  K
Sbjct: 210 SGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVK 269

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL+   EM    I P   V   ++ AC + G L  G  I   + RN    ++     L 
Sbjct: 270 EALKFVQEMP---IDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNY-VLLS 325

Query: 339 DMYAKCGRLDMAWKVFEDMKMK 360
           ++YAK    +   ++ E M MK
Sbjct: 326 NIYAKMSDWEKKTRIREAMDMK 347


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 289/442 (65%), Gaps = 14/442 (3%)

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +K+  S  AMI+ +A++G  +EAR LF+ + ++D I W+ +IDGY + G   E L +F +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M   K++P +  +  VL+AC   GAL+ G W+H +++ N I ++  +GT+L+DMY+KCG 
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           L+ A  VFE +  K+V  WN+M+ G AMHG + DA+ LF +M     +P  ITF  VL+A
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG++  G +    M+  YGI+P+VEHYGC+V+LLGRAGYL EA E++ +M ++ +  
Sbjct: 183 CSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPV 242

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
           +W  LLGACR HG +  GE++ + L+     N                 + VA++R LMK
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMK 302

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           E G +  PG S I+VN  +HEF  GD  HP+ +EIY ML++I   LK  GY+P +  VL 
Sbjct: 303 ESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLH 362

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D+++ +KE +   HSEKLA+AFG I T PG TI+++KNLRVC DCH+ TKLISK+  R +
Sbjct: 363 DLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKV 422

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           ++RDR R+HHF NG CSC D+W
Sbjct: 423 VMRDRNRFHHFVNGLCSCGDYW 444



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            ++ C+A  ++   + A  +F+ + + +   WN ++    +H  P   + L+ +M+    
Sbjct: 11  AMITCYA--KYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKV 68

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +PN+ T   V  AC  T A + G  VH+++  NG+  +V V +S I MY+  G +  AR 
Sbjct: 69  RPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----KDKNTGSYNAMISGFARFGR 245
           + +  S  DV+ WN+++ GY   G  + A  LFK            ++  +++  +  G 
Sbjct: 129 VFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGL 188

Query: 246 FEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
             E  K F  M D+  I      +  +++   + GY +EA E+   M+ D+      +  
Sbjct: 189 VSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ---DPVLWG 245

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            +L AC   G +  G  I +++   ++         L ++YA  G  +   +V   MK
Sbjct: 246 TLLGACRLHGNIALGEQIAEYLVSQNLANSGTY-VLLSNIYAAAGNWEGVARVRTLMK 302


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 335/588 (56%), Gaps = 41/588 (6%)

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
           ++ + A +  N   K     WN+++              ++ +M+    + ++FT+ +V 
Sbjct: 237 NDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVI 296

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             C+     + G ++HA+ +K                            + +      + 
Sbjct: 297 SVCANAGCFRLGKEMHAYFLKT---------------------------VANPAPDVAMP 329

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             NALI  Y KCG ++ A+E+F    +++  S+N ++SG+      +EA+  FNEM +K+
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++W  +I G  + G+ +EAL+ FN M+    +P  +  +  + +C+ LG+L  G  +H 
Sbjct: 390 ILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHA 449

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            V R         G AL+ MYA+CG +D A  +F +M   +  +WNAMI  L  HG+   
Sbjct: 450 QVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQ 509

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AIELF +M +E + PDRI+F  V+SAC+HAG++  G +    M  +YG++P+ EHY  I+
Sbjct: 510 AIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARII 569

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR- 499
           DLL RAG  +EA+EV+ SMP EP A +WEALL  CR HG ++ G    + L E++PQ+  
Sbjct: 570 DLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDG 629

Query: 500 -------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                        + +D+AK+RKLM++RG+K  PG S I+V   +H F  GD +HP+V++
Sbjct: 630 TYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQ 689

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           IY  L++++ +++  GY P++  VL D++ + KE     HSEKLA+A+GF+    GAT+R
Sbjct: 690 IYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVR 749

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V KNLR+C DCH+A K +SKV  R+I+VRD  R+HHFR+GKCSC D+W
Sbjct: 750 VFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 198/453 (43%), Gaps = 82/453 (18%)

Query: 76  ANSRFSNFELALKVFNSV---HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
           A S   + +L+ K+F+      + +VF +N+++ A   +++    I L+ +M   + +P+
Sbjct: 88  AYSAAGDLKLSRKIFSDTPLGMRDSVF-YNAMITAYSHNHDGHAAIELFCDMQRDNFRPD 146

Query: 133 KFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---------CFG 182
            +T+ +V  A + + E +K   Q+H  VVK+G      V ++ I  Y             
Sbjct: 147 NYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSS 206

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
            + +AR++ D+    D + W  +I GY+K  D++ AKE    T  K   ++NAMISG+A 
Sbjct: 207 LMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G + EA                                E+F +M   KI+  +F  + V
Sbjct: 267 RGLYLEA-------------------------------FEMFRKMIMSKIQLDEFTFTSV 295

Query: 303 LAACASLGALDQGIWIHDH----VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           ++ CA+ G    G  +H +    V   +  V   +  AL+  Y KCG++D+A ++F  M 
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP 355

Query: 359 MKEVFTWN-------------------------------AMIGGLAMHGRADDAIELFFK 387
            +++ +WN                                MI GLA  G A++A++ F +
Sbjct: 356 ERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNR 415

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+ +   P    FA  + +C+  G +  G Q L      YG +  +     ++ +  R G
Sbjct: 416 MKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ-LHAQVVRYGYESSLSAGNALITMYARCG 474

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            +  A  +  +MP   +A  W A++ A  +HG+
Sbjct: 475 VVDAAHCLFINMPC-VDAISWNAMIAALGQHGQ 506



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 150/362 (41%), Gaps = 74/362 (20%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VHAH++ +G     H+ +  I +Y+    +N AR + D+  + D++    LI  Y   GD
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGD 94

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           ++ ++++F  T                              +  +D + ++A+I  Y+ +
Sbjct: 95  LKLSRKIFSDTP-----------------------------LGMRDSVFYNAMITAYSHN 125

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVL 333
                A+E+F +MQRD  +P  +  + VL A A +   ++    +H  V ++       +
Sbjct: 126 HDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSV 185

Query: 334 GTALVDMYAKCGR---------LDMAWKVFEDMKMKEVFT-------------------- 364
             AL+  Y KC           +  A K+F++M  ++  +                    
Sbjct: 186 LNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEF 245

Query: 365 -----------WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
                      WNAMI G A  G   +A E+F KM   K++ D  TF  V+S CA+AG  
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 414 DRGLQALTY-MQQMYGIDPEVEH--YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             G +   Y ++ +    P+V       ++    + G +  A+E+ + MP E +   W  
Sbjct: 306 RLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNI 364

Query: 471 LL 472
           +L
Sbjct: 365 IL 366



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           Y  A  V   M     +PR  +L+ ++   +    L+   ++ D + +     D V  T 
Sbjct: 29  YSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQP----DIVARTT 84

Query: 337 LVDMYAKCGRLDMAWKVFED--MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           L+  Y+  G L ++ K+F D  + M++   +NAMI   + +     AIELF  MQR+  R
Sbjct: 85  LIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFR 144

Query: 395 PDRITFACVLSACAHAGMIDRGLQAL 420
           PD  TF  VL A A     ++  Q L
Sbjct: 145 PDNYTFTSVLGALALVAEKEKHCQQL 170


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/650 (35%), Positives = 358/650 (55%), Gaps = 88/650 (13%)

Query: 29  FSQKTILDILNT--------KCHTSWQHLKQAHAVILKSGHFQD-HYVSGTLVKCHANSR 79
           F++ + +D +NT        KC+ S + L Q  A  +KS H +D  +V+  +  C  +  
Sbjct: 18  FTKHSKIDTVNTQNPILLISKCN-SLRELMQIQAYAIKS-HIEDVSFVAKLINFCTESPT 75

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
            S+   A  +F ++ +P++ ++NS+ R       P  V SL+ E++     P+ +T+P++
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            KAC++ +A +EG Q+H   +K GL  +V         Y C                   
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNV---------YVC------------------- 167

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
                LI+ Y +C D++ A+ +F    +     YNAM                       
Sbjct: 168 ---PTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM----------------------- 201

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
                   I GY +     EAL +F EMQ   +KP +  L  VL++CA LG+LD G WIH
Sbjct: 202 --------ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIH 253

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            + K++S C    + TAL+DM+AKCG LD A  +FE M+ K+   W+AMI   A HG+A+
Sbjct: 254 KYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAE 313

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            ++ +F +M+ E ++PD ITF  +L+AC+H G ++ G +  + M   +GI P ++HYG +
Sbjct: 314 KSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSM 373

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME---- 495
           VDLL  AG L +A E I  +P+ P   +W  LL AC  H  ++  E++ + + E++    
Sbjct: 374 VDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHG 433

Query: 496 ----------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                      +N++ + V  +RK+MK+R     PG S I+VN V+HEF +GDG      
Sbjct: 434 GDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATT 493

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +++  L +++++LK+ GY P++S V+  +++++EKE   +YHSEKLAI FG +NT PG T
Sbjct: 494 KLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV+KNLRVC DCH+A KLIS +F R ++ RD  R+HHF +GKCSC DFW
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/491 (43%), Positives = 300/491 (61%), Gaps = 19/491 (3%)

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           YA  G V++AR+I       + I WN L+  Y++ G IE AK LF+S  D    S+N ++
Sbjct: 67  YAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLM 126

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
            GF R     + R LF+ M  +D I+WSA+I GY+++G  +EAL  F EMQRD  +  + 
Sbjct: 127 GGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRS 181

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
             +C L+ C+++ AL+ G  +H  + +        +G AL+ MY KCG +D A   F+++
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI 241

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K+V +WN MI G A HG  ++A+ +F  M+   +RPD  T   VL+AC+HAG++D+G 
Sbjct: 242 LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS 301

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           +    M + YGI  ++ HY C+VDLLGRAG L EA+ ++ +MP EP+AA W ALLGA R 
Sbjct: 302 EYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRI 361

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSS 523
           HG  E GE+  +I+ EMEP N               R  D  KMR  M+ +G+K  PG S
Sbjct: 362 HGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYS 421

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            ++V   IH F+ GD SHP   +IY  L+++  KLK EGY  +++ V  D++EEEK    
Sbjct: 422 WLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHML 481

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           KYHSEKLA+A+G +    G  IRVIKNLRVCEDCH+A K ISK+  R II+RD  R+H+F
Sbjct: 482 KYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYF 541

Query: 644 RNGKCSCNDFW 654
             G CSC DFW
Sbjct: 542 EGGSCSCRDFW 552



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 149/308 (48%), Gaps = 22/308 (7%)

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           +I GYL+    + A++LF    +++  S+N M++G+ R    + AR LF  M ++D ++W
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC--VLAACASLGALDQGIWIHDHV 322
           +A++ GY ++G+  EA E+F +M      P K  +S   +LAA    G ++        +
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKM------PLKNGISWNGLLAAYVQNGRIEDA----KRL 110

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
             + +    V    L+  + +  R      +F++M  ++  +W+AMI G + +G +++A+
Sbjct: 111 FESKMDWTLVSWNCLMGGFVRKRR-----NLFDNMPQRDSISWSAMIAGYSQNGCSEEAL 165

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
             F +MQR+  R +R +F C LS C++   ++ G Q    + +  G          ++ +
Sbjct: 166 HFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKA-GYQTGWYVGNALLAM 224

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
             + G + EA +    + +E +   W  ++    +HG   FGE    +   M+    R D
Sbjct: 225 YCKCGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHG---FGEEALTVFELMKTTGIRPD 280

Query: 503 DVAKMRKL 510
           D   +  L
Sbjct: 281 DATMVSVL 288



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 118/309 (38%), Gaps = 73/309 (23%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+++ + +   W++++    ++      +  + EM     + N+ ++      CS   A
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            + G Q+H  +VK G     +V ++ + MY   G +++AR    +  + DV+ WN +I G
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITW 264
           Y                               AR G  EEA  +F  M       D+ T 
Sbjct: 256 Y-------------------------------ARHGFGEEALTVFELMKTTGIRPDDATM 284

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
            +++   +  G   +  E F  M RD                                  
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDY--------------------------------- 311

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADD 380
             I    V  T +VD+  + G+L+ A  + ++M  + +  TW A++G   +HG     + 
Sbjct: 312 -GITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 370

Query: 381 AIELFFKMQ 389
           A ++ F+M+
Sbjct: 371 AAQIIFEME 379


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/659 (34%), Positives = 356/659 (54%), Gaps = 56/659 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           + + HA+++ +G F     +  L++ +A  R  + E A +VF+   +  V  WN+++ A 
Sbjct: 23  IAKIHALMILTGIFGHGNSNAKLIQSYA--RLGHIESARQVFDKSPQCGVDAWNAMIIAY 80

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                 +  +SLY  M     +P+  TY  V KAC+ +   + G +     V  G   DV
Sbjct: 81  SRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDV 140

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ + +YA  G +++A ++ D   + D++CW  +I G  + G    A ++++    K
Sbjct: 141 FVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 229 NTGSYNAMISG---------------------------------------FARFGRFEEA 249
                  ++ G                                       +A+ G  E A
Sbjct: 201 RVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELA 260

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F  M  K+ I+WSA+I G+ ++G+   AL++  +MQ    KP    L  VL AC+ +
Sbjct: 261 SCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQV 320

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G L  G  +H ++ R  +  D V  TA++DMY+KCG L  A  VF+ +  ++  +WNA+I
Sbjct: 321 GFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAII 379

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
               +HG  ++A+ LF +M+   ++PD  TFA +LSA +H+G++++G    + M   Y I
Sbjct: 380 ASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKI 439

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  +HY C+VDLL RAG + EA+E+I SM  EP  A+W ALL  C  HG+   GE   K
Sbjct: 440 QPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAK 499

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            +LE+ P +              RR D+VA++RK+MK+ G+K  PG S+++VNG +H F 
Sbjct: 500 KVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFL 559

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             D SH Q +EI  +L K+  ++K  GY P +  VL +++EE KE     HSE+LAIAFG
Sbjct: 560 MEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFG 619

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +NT PG  + + KNLRVC DCH ATK ISK+  R+I+VRD  R+HHF++G CSC D+W
Sbjct: 620 LLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/609 (37%), Positives = 328/609 (53%), Gaps = 58/609 (9%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+ LR           ++LY +M+     PN FT+P  FK+C+       G Q+H HV+
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNALIDGYLKCGDIEGA 218
           K G   +  V++S I MY     +  AR++ D+   S++  +C+NALI GY        A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 219 KELFKSTK---------------------------------------DKNTGSYNAMISG 239
             LF+  +                                       D +    N +++ 
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM 203

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G  + ARKLF+ M +K  ITW+A+I GY ++G     L+++ +M+   I P    L
Sbjct: 204 YVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTL 263

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL++CA LGA   G  +   ++ +    +  L  AL++MYA+CG L  A  +F+ M  
Sbjct: 264 VGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K V +W A+I G  MHG+ + A++LF +M      PD   F  VLSAC+HAG+ ++GL  
Sbjct: 324 KNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYY 383

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            T M++ YG+ P  EHY C+VDLLGRAG L EA ++I SM +EP+ AVW ALLGAC+ H 
Sbjct: 384 FTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHR 443

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            VE  E   + ++E EP N                 + + ++R +M+ER +K  PG S +
Sbjct: 444 NVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYV 503

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           +  G IH F  GD +HPQ +EIY ML  + + +K  G S ++ Q   +   EE  T    
Sbjct: 504 EYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQ---ESRNEELITGMGV 560

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEKLAIAFG INT+PG  I VIKNLRVC DCH   KL+S++  R ++VRD  R+HHF+N
Sbjct: 561 HSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKN 620

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 621 GVCSCKDYW 629



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+A +    +  +++EAL ++ +M      P  F       +CASL     G  +H HV
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADD 380
            +     +  + T+L+ MY KC  +  A KVF++          +NA+I G +++ R  D
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL-QALTYMQQMYGIDPEVEHYGCI 439
           A+ LF +M++E +  + +T   ++  C  AG I  G   +L      +G+D ++    C+
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDLSVGNCL 200

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + +  R G +  A ++   MP E     W A++    ++G
Sbjct: 201 LTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISGYAQNG 239


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/658 (34%), Positives = 352/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA+++++G+ +D + +  LV  +  S+  +  +A  VF  V + +V  WN+ +  C+
Sbjct: 222 RKVHAMVIRTGYDKDVFTANALVDMY--SKLGDIRMAAVVFGKVPETDVVSWNAFISGCV 279

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      + L  +M      PN FT  ++ KAC+ + A   G Q+H  +VK     D +
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY 339

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           +    + MYA  G ++ A+++ D   + D++ WNALI G         A  LF       
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 223 ------------KSTKD--------------------KNTGSYNAMISGFARFGRFEEAR 250
                       KST                       ++   N +I  + +      A 
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F +    D I ++++I   ++  + ++A+++F EM R  + P  FVLS +L ACASL 
Sbjct: 460 RVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLS 519

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A +QG  +H H+ +     D   G ALV  YAKCG ++ A   F  +  K V +W+AMIG
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIG 579

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG    A+++F +M  E + P+ IT   VL AC HAG++D   +    M++M+GI+
Sbjct: 580 GLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIE 639

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
              EHY C++DLLGRAG L +A E+++SMP + NAAVW ALL A R H + E G    + 
Sbjct: 640 RTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEK 699

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L  +EP+                  DDVAK+RKLMK+  +K  P  S +++   +H F  
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIV 759

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP+ ++IY  L ++ + +   GY PN    L D+D+ EKE    +HSE+LA+AF  
Sbjct: 760 GDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFAL 819

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I+T  GA IRV KNLR+C DCH+A K IS +  R+II+RD  R+HHFR+G CSC D+W
Sbjct: 820 ISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 229/503 (45%), Gaps = 49/503 (9%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
             + + ++  +EF    +L     KC        Q HA+ + +G   D +V+  LV  + 
Sbjct: 92  RSMRSCSVRCNEFVLPVVL-----KCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYG 146

Query: 77  NSRFSNFELALKVFNSVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
              F   + A  VF+    + N   WN ++ A ++++     + ++ EMV    +PN+F 
Sbjct: 147 G--FGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFG 204

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           +  V  AC+ +   + G +VHA V++ G   DV   ++ + MY+  G +  A  +     
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP 264

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-----------------NTGSYN---- 234
           ++DV+ WNA I G +  G  + A EL    K                    +G++N    
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324

Query: 235 ------------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                              ++  +A+ G  ++A+K+F+ +  +D + W+A+I G +    
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQ 384

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           + EAL +F  M+++     +  L+ VL + ASL A+     +H   ++     D+ +   
Sbjct: 385 HAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNG 444

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+D Y KC  L+ A++VFE     ++  + +MI  L+     +DAI+LF +M R+ + PD
Sbjct: 445 LIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPD 504

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
               + +L+ACA     ++G Q   ++ +   +  +V     +V    + G + +A+   
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS-DVFAGNALVYTYAKCGSIEDADLAF 563

Query: 457 SSMPMEPNAAVWEALLGACRKHG 479
           S +P E     W A++G   +HG
Sbjct: 564 SGLP-EKGVVSWSAMIGGLAQHG 585



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 201/420 (47%), Gaps = 60/420 (14%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL---ALKVFNSVHKPNVFVWNSVLRACL 109
           HA +LKSG F        + + H  S +S   L   A +VF+ +  P    W+S++ A  
Sbjct: 27  HAHLLKSGLF-------AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  P   +  +  M     + N+F  P V K C+       G Q+HA  +  GL GD+ 
Sbjct: 80  NNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAG--FGTQLHALAMATGLGGDIF 136

Query: 170 VKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLK---CG------------ 213
           V ++ + MY  FG V++AR + D+ G + + + WN L+  Y+K   C             
Sbjct: 137 VANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWG 196

Query: 214 --------------------DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
                               D+E  +++     ++  DK+  + NA++  +++ G    A
Sbjct: 197 GVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMA 256

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F ++ + D ++W+A I G    G+ + ALE+  +M+   + P  F LS +L ACA  
Sbjct: 257 AVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGS 316

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GA + G  IH  + + +   D  +   LVDMYAK G LD A KVF+ +  +++  WNA+I
Sbjct: 317 GAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALI 376

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G +   +  +A+ LF +M++E    +R T A VL + A        L+A++  +Q++ +
Sbjct: 377 SGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA-------SLEAISDTRQVHAL 429



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 172/371 (46%), Gaps = 42/371 (11%)

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           T++  +G  +HAH++K+GL      ++  +  Y+       AR++ D+      + W++L
Sbjct: 17  TQSLLQGAHIHAHLLKSGLFAVF--RNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSL 74

Query: 206 IDGYLKCGDIEGAKELFKSTK-------------------DKNTGSY------------- 233
           +  Y        A   F+S +                   D   G+              
Sbjct: 75  VTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGD 134

Query: 234 ----NAMISGFARFGRFEEARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
               NA+++ +  FG  +EAR +F+E   +++ ++W+ ++  Y K+     A++VF EM 
Sbjct: 135 IFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMV 194

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              ++P +F  SCV+ AC     L+ G  +H  V R     D     ALVDMY+K G + 
Sbjct: 195 WGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIR 254

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
           MA  VF  +   +V +WNA I G  +HG    A+EL  +M+   + P+  T + +L ACA
Sbjct: 255 MAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
            +G  + G Q   +M +          +G +VD+  + G L +A++V   +P + +  +W
Sbjct: 315 GSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLW 372

Query: 469 EALLGACRKHG 479
            AL+  C  HG
Sbjct: 373 NALISGC-SHG 382



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 138/302 (45%), Gaps = 15/302 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N ++S +++      AR++F+E+ D   ++WS+++  Y+ +   ++AL  F  M+   ++
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVR 100

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
             +FVL  VL      G    G  +H       +  D  +  ALV MY   G +D A  V
Sbjct: 101 CNEFVLPVVLKCAPDAGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMV 157

Query: 354 FEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           F++    +   +WN ++     + R   A+++F +M    ++P+   F+CV++AC  +  
Sbjct: 158 FDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRD 217

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           ++ G + +  M    G D +V     +VD+  + G +  A  V   +P E +   W A +
Sbjct: 218 LEAG-RKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFI 275

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             C  HG  +    L   LL+M+       +V  +  ++     K   GS   ++   IH
Sbjct: 276 SGCVLHGHDQHALEL---LLQMKSSG-LVPNVFTLSSIL-----KACAGSGAFNLGRQIH 326

Query: 533 EF 534
            F
Sbjct: 327 GF 328


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/626 (36%), Positives = 352/626 (56%), Gaps = 23/626 (3%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LK+ H +I      Q+  +   L++ +A        L  KVF+ +   NV  +N ++R+ 
Sbjct: 37  LKKLHTMIFYLNSHQNPSLGIKLMRSYAAC--GEPGLTRKVFDEMSDRNVVFYNVMIRSY 94

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + ++     + ++ EMV    +P+ +TYP V KACS +E  + G+ +H  V+K GL  ++
Sbjct: 95  VNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNL 154

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD- 227
            V +  I MY   GC+ +AR++ D+    DV+ WN+++ GY      + A E+ +  +D 
Sbjct: 155 FVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDY 214

Query: 228 --KNTGSYNAMISGFARFGRFEEA---RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
             K  G   A +         E      K+F  +  K+ I+W+ +I  Y K+    +A++
Sbjct: 215 GQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVD 274

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++ +M++ +++P     + VL AC  L AL  G  IH++V++  +C + +L  +L+DMYA
Sbjct: 275 LYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYA 334

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG LD A +VF+ MK ++V +W ++I    M G+  +A+ LF +M      PD I F  
Sbjct: 335 RCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVA 394

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +LSAC+H+G++D G      M   Y I P +EHY C+VDLLGRAG + EA  +I  MP+E
Sbjct: 395 ILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIE 454

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           PN  VW  LL +CR    ++ G      LL++ P+                R  +V ++R
Sbjct: 455 PNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIR 514

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
            +MK + I+  PG S +++N  +H F  GD SHPQ KEIY  L  ++ K+K  GY P + 
Sbjct: 515 SVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETD 574

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
             L D++EE+KE     HSEKLAI F  +NT     IR+ KNLRVC DCH A KLISK+ 
Sbjct: 575 SALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLISKIV 633

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+IIVRD  R+HHF++G CSC D+W
Sbjct: 634 EREIIVRDTNRFHHFKDGVCSCGDYW 659


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 338/602 (56%), Gaps = 51/602 (8%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS- 129
           ++  H N      +LAL  F  + + ++  WNS++  C +H      +  +S ++   S 
Sbjct: 179 MISLHMNC--GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL 236

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP++F+  +   AC+  E    G Q+H ++V+               M+   G V     
Sbjct: 237 KPDRFSLASALSACANLEKLSFGKQIHGYIVRT--------------MFDASGAVG---- 278

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFE 247
                        NALI  Y K G +E A+ + + +   D +  ++ A+++G+ + G   
Sbjct: 279 -------------NALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDIT 325

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR++FN + D D + W+A+I GY ++G   +A+EVF  M  +  +P  F L+ +L+A +
Sbjct: 326 PARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS 385

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWN 366
           S+ +L+ G  IH    R+   +   +G AL  MYAK G ++ A KVF  ++  ++  +W 
Sbjct: 386 SVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWT 445

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +MI  LA HG  ++AIELF +M    ++PD IT+  VLSAC H G++++G      M+ +
Sbjct: 446 SMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNV 505

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + IDP + HY C+VDL GRAG L EA + + +MPMEP+   W +LL +C+ +  V+  + 
Sbjct: 506 HKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKV 565

Query: 487 LGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             + LL +EP N               + DD AK+RKLMK RG+K   G S + +    H
Sbjct: 566 AAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTH 625

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F   DG HPQ  EIY M+ KI +++K  G++P++  VL D++ E K+   +YHSEKLAI
Sbjct: 626 VFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAI 685

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG I+T    T+R++KNLRVC DCH+A K ISK+  R+IIVRD  R+HHF++G CSC D
Sbjct: 686 AFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKD 745

Query: 653 FW 654
           +W
Sbjct: 746 YW 747



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 190/432 (43%), Gaps = 68/432 (15%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A +VF+ +   +   W +++    +       I ++ +MV     P +FT   V  +
Sbjct: 57  LEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLAS 116

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+ T +   G +VH+ VVK GL   V V +S + MYA  G +  A+ + D     +   W
Sbjct: 117 CAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSW 176

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NA+I  ++ CG ++ A   F+   +++  S+N+MI+                        
Sbjct: 177 NAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIA------------------------ 212

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
                  G  + G+  EAL+ F+ + +D  +KP +F L+  L+ACA+L  L  G  IH +
Sbjct: 213 -------GCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGY 265

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWK----------------------------- 352
           + R        +G AL+ MYAK G +++A +                             
Sbjct: 266 IVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDIT 325

Query: 353 ----VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
               +F  +K  +V  W AMI G   +G  +DAIE+F  M  E  RP+  T A +LSA +
Sbjct: 326 PARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS 385

Query: 409 HAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
               ++ G Q   + ++    + P V +   +  +  +AG +  A +V + +    +   
Sbjct: 386 SVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVS 443

Query: 468 WEALLGACRKHG 479
           W +++ A  +HG
Sbjct: 444 WTSMIMALAQHG 455



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 166/327 (50%), Gaps = 46/327 (14%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
           G    V   N L++ Y K G    A +LF     K T S+N ++SG+A+ G+ E+A ++F
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + +  +D ++W+ II GY + G +++A+++F +M +DK+ P +F L+ VLA+CA+ G+  
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-------------- 359
            G  +H  V +  +     +  +L++MYAK G L MA  VF+ MK+              
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 360 -----------------KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFA 401
                            +++ +WN+MI G   HG  ++A++ F  + ++  ++PDR + A
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYG------IDPEVEHYGCIVDLLGRAGYLAEAEEV 455
             LSACA+       L+ L++ +Q++G       D        ++ +  ++G +  A  +
Sbjct: 245 SALSACAN-------LEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRI 297

Query: 456 ISSMPM-EPNAAVWEALLGACRKHGEV 481
           I    + + +   + ALL    K G++
Sbjct: 298 IEQSGISDLDVIAFTALLNGYVKLGDI 324


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/658 (35%), Positives = 350/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA++++ G+ +D + +  LV  +   +    ++A  +F  +   +V  WN+++  C+
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYV--KMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    R I L  +M      PN F   ++ KAC+   A   G Q+H  ++K     D +
Sbjct: 280 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           +    + MYA    ++ A ++ D  S  D+I WNALI G    G  + A  +F       
Sbjct: 340 IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG 399

Query: 223 ------------KSTKDKNTGS--------------------YNAMISGFARFGRFEEAR 250
                       KST      S                     N +I  + +     +A 
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAI 459

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F E +  D I  +++I   ++  + + A+++F EM R  ++P  FVLS +L ACASL 
Sbjct: 460 RVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A +QG  +H H+ +     DA  G ALV  YAKCG ++ A   F  +  + V +W+AMIG
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG    A+ELF +M  E + P+ IT   VL AC HAG++D   +    M++M+GID
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
              EHY C++DLLGRAG L +A E+++SMP + NA+VW ALLGA R H + E G+   + 
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEK 699

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L  +EP+                  ++VAK+RKLMK+  IK  P  S ++V   +H F  
Sbjct: 700 LFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIV 759

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP  KEIY  L ++ + +   GY PN    L D+D  EKE    +HSE+LA+AF  
Sbjct: 760 GDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFAL 819

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T PGA IRV KNLR+C DCH A K IS +  R+II+RD  R+HHFR+G CSC D+W
Sbjct: 820 LSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 206/432 (47%), Gaps = 63/432 (14%)

Query: 53  HAVILKSG---HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           HA +LKSG     ++H +S    KC           A +VF+ +  P    W+S++ A  
Sbjct: 27  HANLLKSGFLASLRNHLIS-FYSKCRRPC------CARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  P   I  +  M       N+F  P V K   + +A + G QVHA  +  G   DV 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDA-QLGAQVHAMAMATGFGSDVF 136

Query: 170 VKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLK---CGD----------- 214
           V ++ + MY  FG ++ AR++ D+ GS+ + + WN L+  Y+K   CGD           
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 215 -IEGAKELFKSTKDKNTGS------------------------YNAMISGFARFGRFEEA 249
            I+  +  F    +  TGS                         NA++  + + GR + A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA 256

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F +M D D ++W+A+I G   +G+   A+E+  +M+   + P  F+LS +L ACA  
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGA 316

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GA D G  IH  + + +   D  +G  LVDMYAK   LD A KVF+ M  +++  WNA+I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALI 376

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G +  GR D+A  +F+ +++E +  +R T A VL + A        L+A +  +Q++ +
Sbjct: 377 SGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA-------SLEAASATRQVHAL 429

Query: 430 DPEVEHYGCIVD 441
               E  G I D
Sbjct: 430 ---AEKIGFIFD 438



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 227/502 (45%), Gaps = 51/502 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + A  +  +EF+   +L     KC    Q   Q HA+ + +G   D +V+  LV  +   
Sbjct: 94  MRAEGVCCNEFALPVVL-----KCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGG- 147

Query: 79  RFSNFELALKVFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            F   + A +VF+    + N   WN ++ A +++++    I ++ EMV    +P +F + 
Sbjct: 148 -FGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  AC+ +     G QVHA VV+ G   DV   ++ + MY   G V+ A  I +    S
Sbjct: 207 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 266

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGSYN------ 234
           DV+ WNALI G +  G    A EL    K                     G+++      
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 326

Query: 235 ----------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                            ++  +A+    ++A K+F+ M+ +D I W+A+I G +  G + 
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 386

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EA  +F  ++++ +   +  L+ VL + ASL A      +H   ++     DA +   L+
Sbjct: 387 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 446

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D Y KC  L  A +VFE+    ++    +MI  L+     + AI+LF +M R+ + PD  
Sbjct: 447 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 399 TFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
             + +L+ACA     ++G Q   ++ ++ +  D    +   +V    + G + +AE   S
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFS 564

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
           S+P E     W A++G   +HG
Sbjct: 565 SLP-ERGVVSWSAMIGGLAQHG 585



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 143/304 (47%), Gaps = 19/304 (6%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +IS +++  R   AR++F+E+ D   ++WS+++  Y+ +G  + A++ F+ M+ + + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 294 PRKFVLSCVLAAC--ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
             +F L  VL     A LGA      +H          D  +  ALV MY   G +D A 
Sbjct: 101 CNEFALPVVLKCVPDAQLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 352 KVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           +VF++    +   +WN ++     + +  DAI++F +M    ++P    F+CV++AC  +
Sbjct: 156 RVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             ID G Q    + +M G + +V     +VD+  + G +  A  +   MP + +   W A
Sbjct: 216 RNIDAGRQVHAMVVRM-GYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNA 273

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           L+  C  +G      R  ++LL+M+      +        M    +K   G+   D+   
Sbjct: 274 LISGCVLNGH---DHRAIELLLQMKSSGLVPN------VFMLSSILKACAGAGAFDLGRQ 324

Query: 531 IHEF 534
           IH F
Sbjct: 325 IHGF 328



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 6/174 (3%)

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A+  AL  G  +H ++ ++     A L   L+  Y+KC R   A +VF+++      +W+
Sbjct: 15  AAAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +++   + +G    AI+ F  M+ E +  +      VL     A +   G Q +  M   
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---GAQ-VHAMAMA 128

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            G   +V     +V + G  G++ +A  V      E NA  W  L+ A  K+ +
Sbjct: 129 TGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQ 182


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/658 (34%), Positives = 361/658 (54%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  ++ SG   + +    +V  +A  R  N   A  +F+ + + ++  WN+++    
Sbjct: 50  KEIHGSVITSGFSWNLFAMTGVVNMYAKCRQIND--AYNMFDRMPERDLVCWNTMISGYA 107

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + L   M     +P+  T  ++  A + T   + G+ VH +V++ G    V+
Sbjct: 108 QNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVN 167

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + MY+  G V+ AR I D      V+ WN++IDGY++ GD EGA  +F+   D+ 
Sbjct: 168 VSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG 227

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 +    N++IS +++  R + A 
Sbjct: 228 VQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAA 287

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F  + +K  ++W+A+I GY ++G   EAL  F EMQ   IKP  F +  V+ A A L 
Sbjct: 288 DIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELS 347

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
              Q  WIH  V R  +  +  + TALVDMYAKCG +  A K+F+ M  + V TWNAMI 
Sbjct: 348 IPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMID 407

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    ++ELF +M++  ++P+ ITF C LSAC+H+G+++ GL     M++ YGI+
Sbjct: 408 GYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIE 467

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRAG L +A + I  MP++P   V+ A+LGAC+ H  V+ GE+    
Sbjct: 468 PTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFE 527

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           + ++ P +                   VAK+R +M++ G++  PG S++++   +H F +
Sbjct: 528 IFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYS 587

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  SHPQ K+IY  L+ ++++++  GY P+++ +  D++++ K      HSEKLAIAFG 
Sbjct: 588 GTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGL 646

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G  I + KNLRVC DCH+ATK IS V  R+IIVRD  R+H F++G CSC D+W
Sbjct: 647 LNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 197/431 (45%), Gaps = 52/431 (12%)

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           +S +S M     +P  + +  + K C      K G ++H  V+ +G   ++   +  + M
Sbjct: 15  LSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNM 74

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL---------------- 221
           YA    +N A  + D   + D++CWN +I GY + G  + A  L                
Sbjct: 75  YAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITI 134

Query: 222 ---------------------------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
                                      F+S  + +T    A++  +++ G    AR +F+
Sbjct: 135 VSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVST----ALVDMYSKCGSVSIARVIFD 190

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            M+ +  ++W+++IDGY + G  + A+ +F +M  + ++P    +   L ACA LG L++
Sbjct: 191 GMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLER 250

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G ++H  V +  +  D  +  +L+ MY+KC R+D+A  +F++++ K + +WNAMI G A 
Sbjct: 251 GKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQ 310

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G  ++A+  F +MQ   ++PD  T   V+ A A    I R  + +  +     +D  V 
Sbjct: 311 NGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELS-IPRQAKWIHGLVIRRFLDKNVF 369

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               +VD+  + G +  A ++   M    +   W A++     HG    G+   ++  EM
Sbjct: 370 VMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHG---LGKTSVELFKEM 425

Query: 495 EPQNRRCDDVA 505
           +    + +D+ 
Sbjct: 426 KKGTIKPNDIT 436



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 4/234 (1%)

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++ GY K      AL  F+ M+ D ++P  +  + +L  C     L +G  IH  V  + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              +    T +V+MYAKC +++ A+ +F+ M  +++  WN MI G A +G A  A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           +M  E  RPD IT   +L A A   ++  G+    Y+ +  G +  V     +VD+  + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRA-GFESLVNVSTALVDMYSKC 179

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE--MEPQN 498
           G ++ A  +   M        W +++    + G+ E    + + +L+  ++P N
Sbjct: 180 GSVSIARVIFDGMD-HRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTN 232


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/552 (40%), Positives = 320/552 (57%), Gaps = 49/552 (8%)

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y+ M  +    + FT P V K+C+       G  VH   ++ GL GD +V +S       
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGAS------- 147

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
                                   LID Y+KCG I  A++LF     ++  S+NA+I+G+
Sbjct: 148 ------------------------LIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGY 183

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD--KIKPRKFV 298
            + G    A  LF  M  ++ ++W+A+I GYT++G+ ++AL +F+EM +D  ++KP    
Sbjct: 184 MKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVT 243

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           +  VL ACA   AL++G  IHD      + +++ + TAL  MYAKC  L  A   F+ + 
Sbjct: 244 IVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIA 303

Query: 359 M--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
              K +  WN MI   A HG   +A+ +F  M R  ++PD +TF  +LS C+H+G+ID G
Sbjct: 304 QNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           L     M  ++ ++P VEHY C+VDLLGRAG L EA+E+IS MPM+   +VW ALL ACR
Sbjct: 364 LNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACR 423

Query: 477 KHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGS 522
            H  +E  E   + L  +EP N                 ++V K+R L+K +G+K +PG 
Sbjct: 424 SHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGC 483

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I++NG  H F   D SHPQ KEIY  L+ + EK+KM GY P++S VL DI EEEKE  
Sbjct: 484 SWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYN 543

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG +NT PG  +RV KNLR+C DCH+ATK ISK+++R+IIVRD  R+H 
Sbjct: 544 LTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHC 603

Query: 643 FRNGKCSCNDFW 654
           F++G CSC D+W
Sbjct: 604 FKDGSCSCGDYW 615


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/653 (35%), Positives = 355/653 (54%), Gaps = 87/653 (13%)

Query: 25  PTSEFSQKTI-------LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-CHA 76
           P+S FS+          L +L +KC TS   LKQ  A  +K+    D  V   L+  C  
Sbjct: 16  PSSAFSKNEFVINQLHPLSLL-SKC-TSLNELKQIQAYTIKTNLQSDISVLTKLINFCTL 73

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
           N   S  + A  +F+ +   ++ ++N + R     N P+   SL+ E++     P+ +T+
Sbjct: 74  NPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTF 133

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++ KAC+ ++A +EG+ +H   VK GL  ++++  +                       
Sbjct: 134 SSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPT----------------------- 170

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
                   LI+ Y +C D+  A                               R +F+EM
Sbjct: 171 --------LINMYAECNDMNAA-------------------------------RGVFDEM 191

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
                ++++AII GY +     EAL +F E+Q   I+P    +  V+ +CA LGALD G 
Sbjct: 192 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGK 251

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           WIH++VK+        + TAL+DM+AKCG L  A  +FE M++++   W+AMI   A HG
Sbjct: 252 WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHG 311

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
               AI +F +M+RE +RPD ITF  +L AC+HAG++++G      M + YGI P ++HY
Sbjct: 312 DGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHY 371

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLLGRAG+L EA   +  + ++    +W  LL AC  HG VE  +R+ + + E++ 
Sbjct: 372 GCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDD 431

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
            +               R +DV  +RKLMK+RG+   PG S ++VN V+HEF +GDG H 
Sbjct: 432 AHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC 491

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGFINTDP 601
              E+   L ++++++K+ GY P++S V   D++EE KE   +YHSEKLA+AFG +NT P
Sbjct: 492 VSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPP 551

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G TIRV KNLR+C DCH+A KLIS +F R I++RD  R+H F +GKCSC DFW
Sbjct: 552 GTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 31/258 (12%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+ A+NI  ++ +  ++  I++     +    K  H  + K G   D YV          
Sbjct: 221 ELQASNIEPTDVTMLSV--IMSCALLGALDLGKWIHEYVKKKGF--DKYVKVNTALIDMF 276

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           ++  +   A+ +F  +   +   W++++ A   H +  + IS++ EM     +P++ T+ 
Sbjct: 277 AKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFL 336

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGL-----CGDVHVKSSGIQMYACF-------GCVN 185
            +  ACS           HA +V+ G          +  + GI+ Y C        G ++
Sbjct: 337 GLLYACS-----------HAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLD 385

Query: 186 KARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFA 241
           +A   +D    K+  I W  L+      G++E AK + +      D + G Y  + + +A
Sbjct: 386 EAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYA 445

Query: 242 RFGRFEEARKLFNEMNDK 259
           R GR+E+   L   M D+
Sbjct: 446 RVGRWEDVNHLRKLMKDR 463


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 351/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA++++ G+ +D + +  LV  +   +    ++A  +F  +   +V  WN+++  C+
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYM--KMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    R I L  +M      PN FT  ++ KACS   A   G Q+H  ++K     D +
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           +    + MYA    ++ AR++ D     D+I  NALI G    G  + A  LF       
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 223 ------------KSTKDKNTGS--------------------YNAMISGFARFGRFEEAR 250
                       KST      S                     N +I  + +     +A 
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDAN 459

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F E +  D I  +++I   ++  + + A+++F EM R  ++P  FVLS +L ACASL 
Sbjct: 460 RVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A +QG  +H H+ +     DA  G ALV  YAKCG ++ A   F  +  + V +W+AMIG
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG    A+ELF +M  E + P+ IT   VL AC HAG++D   +    M++M+GID
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
              EHY C++DLLGRAG L +A E+++SMP + NA++W ALLGA R H + E G+   + 
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEK 699

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L  +EP+                  ++VAK+RKLMK+  IK  P  S I+V   +H F  
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIV 759

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP  KEIY  L ++ + +   G+ PN    L D+D  EKE    +HSE+LA+AF  
Sbjct: 760 GDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFAL 819

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T PGA IRV KNLR+C DCH A K ISK+  R+II+RD  R+HHFR+G CSC D+W
Sbjct: 820 LSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 204/420 (48%), Gaps = 60/420 (14%)

Query: 53  HAVILKSGH---FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           HA +LKSG    F++H +S    KC           A +VF+ +  P    W+S++ A  
Sbjct: 27  HASLLKSGSLASFRNHLIS-FYSKCRRPC------CARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  P   I  +  M       N+F  P V K   + +A + G QVHA  +  G   DV 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDA-RLGAQVHAMAMATGFGSDVF 136

Query: 170 VKSSGIQMYACFGCVNKARQILDDG-SKSDVICWNALIDGYLK---CGD----------- 214
           V ++ + MY  FG ++ AR++ ++  S+ + + WN L+  Y+K   CGD           
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 215 ---------------------IEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                                IE  ++    + +   DK+  + NA++  + + GR + A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F +M D D ++W+A+I G   +G+   A+E+  +M+   + P  F LS +L AC+  
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GA D G  IH  + + +   D  +G  LVDMYAK   LD A KVF+ M  +++   NA+I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G +  GR D+A+ LF+++++E +  +R T A VL + A        L+A +  +Q++ +
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-------SLEAASTTRQVHAL 429



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 227/502 (45%), Gaps = 51/502 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + A  +  +EF+   +L     KC    +   Q HA+ + +G   D +V+  LV  +   
Sbjct: 94  MRAEGVCCNEFALPVVL-----KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGG- 147

Query: 79  RFSNFELALKVFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            F   + A +VFN    + N   WN ++ A +++++    I ++ EMV    +P +F + 
Sbjct: 148 -FGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  AC+ +   + G QVHA VV+ G   DV   ++ + MY   G V+ A  I +    S
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 198 DVICWNALIDGYLKCGDIEGAKELF----------------------------------- 222
           DV+ WNALI G +  G    A EL                                    
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 223 ----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K+  D +      ++  +A+    ++ARK+F+ M  +D I  +A+I G +  G + 
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL +F E++++ +   +  L+ VL + ASL A      +H    +     DA +   L+
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D Y KC  L  A +VFE+    ++    +MI  L+     + AI+LF +M R+ + PD  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 399 TFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
             + +L+ACA     ++G Q   ++ ++ +  D    +   +V    + G + +AE   S
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFS 564

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
           S+P E     W A++G   +HG
Sbjct: 565 SLP-ERGVVSWSAMIGGLAQHG 585



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 13/265 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +IS +++  R   AR++F+E+ D   ++WS+++  Y+ +G  + A++ F+ M+ + + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 294 PRKFVLSCVLAAC--ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
             +F L  VL     A LGA      +H          D  +  ALV MY   G +D A 
Sbjct: 101 CNEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 352 KVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           +VF +    +   +WN ++     + +  DAI++F +M    ++P    F+CV++AC  +
Sbjct: 156 RVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             I+ G Q    + +M G D +V     +VD+  + G +  A  +   MP + +   W A
Sbjct: 216 RNIEAGRQVHAMVVRM-GYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNA 273

Query: 471 LLGACRKHGEVEFGERLGKILLEME 495
           L+  C  +G      R  ++LL+M+
Sbjct: 274 LISGCVLNGH---DHRAIELLLQMK 295


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/658 (35%), Positives = 350/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA++++ G+ +D + +  LV  +   +    ++A  +F  +   +V  WN+++  C+
Sbjct: 129 RQVHAMVVRMGYEKDVFTANALVDMYV--KMGRVDIASVIFEKMPDSDVVSWNALISGCV 186

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    R I L  +M      PN F   ++ KAC+   A   G Q+H  ++K     D +
Sbjct: 187 LNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDY 246

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           +    + MYA    ++ A ++ D  S  D+I WNALI G    G  + A  +F       
Sbjct: 247 IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG 306

Query: 223 ------------KSTKDKNTGS--------------------YNAMISGFARFGRFEEAR 250
                       KST      S                     N +I  + +     +A 
Sbjct: 307 LGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAI 366

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F E +  D I  +++I   ++  + + A+++F EM R  ++P  FVLS +L ACASL 
Sbjct: 367 RVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 426

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A +QG  +H H+ +     DA  G ALV  YAKCG ++ A   F  +  + V +W+AMIG
Sbjct: 427 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 486

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG    A+ELF +M  E + P+ IT   VL AC HAG++D   +    M++M+GID
Sbjct: 487 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 546

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
              EHY C++DLLGRAG L +A E+++SMP + NA+VW ALLGA R H + E G+   + 
Sbjct: 547 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEK 606

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L  +EP+                  ++VAK+RKLMK+  IK  P  S ++V   +H F  
Sbjct: 607 LFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIV 666

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP  KEIY  L ++ + +   GY PN    L D+D  EKE    +HSE+LA+AF  
Sbjct: 667 GDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFAL 726

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T PGA IRV KNLR+C DCH A K IS +  R+II+RD  R+HHFR+G CSC D+W
Sbjct: 727 LSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 227/502 (45%), Gaps = 51/502 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + A  +  +EF+   +L     KC    Q   Q HA+ + +G   D +V+  LV  +   
Sbjct: 1   MRAEGVCCNEFALPVVL-----KCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGG- 54

Query: 79  RFSNFELALKVFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            F   + A +VF+    + N   WN ++ A +++++    I ++ EMV    +P +F + 
Sbjct: 55  -FGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 113

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  AC+ +     G QVHA VV+ G   DV   ++ + MY   G V+ A  I +    S
Sbjct: 114 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 173

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------------TGSYN------ 234
           DV+ WNALI G +  G    A EL    K                     G+++      
Sbjct: 174 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 233

Query: 235 ----------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                            ++  +A+    ++A K+F+ M+ +D I W+A+I G +  G + 
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EA  +F  ++++ +   +  L+ VL + ASL A      +H   ++     DA +   L+
Sbjct: 294 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 353

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D Y KC  L  A +VFE+    ++    +MI  L+     + AI+LF +M R+ + PD  
Sbjct: 354 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 399 TFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
             + +L+ACA     ++G Q   ++ ++ +  D    +   +V    + G + +AE   S
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFS 471

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
           S+P E     W A++G   +HG
Sbjct: 472 SLP-ERGVVSWSAMIGGLAQHG 492


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 351/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA++++ G+ +D + +  LV  +   +    ++A  +F  +   +V  WN+++  C+
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYM--KMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    R I L  +M      PN FT  ++ KACS   A   G Q+H  ++K     D +
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           +    + MYA    ++ AR++ D     D+I  NALI G    G  + A  LF       
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 223 ------------KSTKDKNTGS--------------------YNAMISGFARFGRFEEAR 250
                       KST      S                     N +I  + +     +A 
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDAN 459

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F E +  D I  +++I   ++  + + A+++F EM R  ++P  FVLS +L ACASL 
Sbjct: 460 RVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           A +QG  +H H+ +     DA  G ALV  YAKCG ++ A   F  +  + V +W+AMIG
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA HG    A+ELF +M  E + P+ IT   VL AC HAG++D   +    M++M+GID
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
              EHY C++DLLGRAG L +A E+++SMP + NA++W ALLGA R H + E G+   + 
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEK 699

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L  +EP+                  ++VAK+RKLMK+  IK  P  S I+V   +H F  
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIV 759

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP  KEIY  L ++ + +   G+ PN    L D+D  EKE    +HSE+LA+AF  
Sbjct: 760 GDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFAL 819

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++T PGA IRV KNLR+C DCH A K ISK+  R+II+RD  R+HHFR+G CSC D+W
Sbjct: 820 LSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 203/420 (48%), Gaps = 60/420 (14%)

Query: 53  HAVILKSGH---FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           HA +LKSG    F++H +S    KC           A + F+ +  P    W+S++ A  
Sbjct: 27  HASLLKSGSLASFRNHLIS-FYSKCRRPC------CARRFFDEIPDPCHVSWSSLVTAYS 79

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  P   I  +  M       N+F  P V K   + +A + G QVHA  +  G   DV 
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC--VPDA-RLGAQVHAMAMATGFGSDVF 136

Query: 170 VKSSGIQMYACFGCVNKARQILDDG-SKSDVICWNALIDGYLK---CGD----------- 214
           V ++ + MY  FG ++ AR++ ++  S+ + + WN L+  Y+K   CGD           
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 215 ---------------------IEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                                IE  ++    + +   DK+  + NA++  + + GR + A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F +M D D ++W+A+I G   +G+   A+E+  +M+   + P  F LS +L AC+  
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GA D G  IH  + + +   D  +G  LVDMYAK   LD A KVF+ M  +++   NA+I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G +  GR D+A+ LF+++++E +  +R T A VL + A        L+A +  +Q++ +
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA-------SLEAASTTRQVHAL 429



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 227/502 (45%), Gaps = 51/502 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + A  +  +EF+   +L     KC    +   Q HA+ + +G   D +V+  LV  +   
Sbjct: 94  MRAEGVCCNEFALPVVL-----KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGG- 147

Query: 79  RFSNFELALKVFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            F   + A +VFN    + N   WN ++ A +++++    I ++ EMV    +P +F + 
Sbjct: 148 -FGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 206

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  AC+ +   + G QVHA VV+ G   DV   ++ + MY   G V+ A  I +    S
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 198 DVICWNALIDGYLKCGDIEGAKELF----------------------------------- 222
           DV+ WNALI G +  G    A EL                                    
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 223 ----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K+  D +      ++  +A+    ++ARK+F+ M  +D I  +A+I G +  G + 
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL +F E++++ +   +  L+ VL + ASL A      +H    +     DA +   L+
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D Y KC  L  A +VFE+    ++    +MI  L+     + AI+LF +M R+ + PD  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 399 TFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
             + +L+ACA     ++G Q   ++ ++ +  D    +   +V    + G + +AE   S
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN--ALVYTYAKCGSIEDAELAFS 564

Query: 458 SMPMEPNAAVWEALLGACRKHG 479
           S+P E     W A++G   +HG
Sbjct: 565 SLP-ERGVVSWSAMIGGLAQHG 585



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 13/265 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +IS +++  R   AR+ F+E+ D   ++WS+++  Y+ +G  + A++ F+ M+ + + 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 294 PRKFVLSCVLAAC--ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
             +F L  VL     A LGA      +H          D  +  ALV MY   G +D A 
Sbjct: 101 CNEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 352 KVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           +VF +    +   +WN ++     + +  DAI++F +M    ++P    F+CV++AC  +
Sbjct: 156 RVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             I+ G Q    + +M G D +V     +VD+  + G +  A  +   MP + +   W A
Sbjct: 216 RNIEAGRQVHAMVVRM-GYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNA 273

Query: 471 LLGACRKHGEVEFGERLGKILLEME 495
           L+  C  +G      R  ++LL+M+
Sbjct: 274 LISGCVLNGH---DHRAIELLLQMK 295


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 345/622 (55%), Gaps = 51/622 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA +L  G      V   +V  +A+S   + + ++ VFN + +P+  ++NS++RA   
Sbjct: 91  QVHAHMLLRGLQPTALVGSKMVAFYASS--GDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +    R ++ Y  M       + FT+P V K+     +   G  VH  +++ GL  D++V
Sbjct: 149 YGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 208

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S I +Y                                KCG+I  A ++F +   ++ 
Sbjct: 209 ATSLIILYG-------------------------------KCGEINDAGKVFDNMTIRDV 237

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S+NA+++G+ + G  + A  +F  M  ++ ++W+ +I GY++ G  ++AL +F+EM ++
Sbjct: 238 SSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKE 297

Query: 291 K--IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              ++P    +  VL ACA L  L++G  IH+   R  +  +A +  AL  MYAKCG L 
Sbjct: 298 DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLV 357

Query: 349 MAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
            A   F+ +   E  +  WN MI   A +G    A+  F +M +  ++PD ITF  +LS 
Sbjct: 358 DARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSG 417

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H+G++D GL+   +M   Y I+P VEHY C+ DLLGRAG LAEA +++  MPM    +
Sbjct: 418 CSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPS 477

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
           +W +LL ACRKH  +E  E   + L  +EP+N               R  +V K+R ++K
Sbjct: 478 IWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVK 537

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
            +G K +PG S I++NG  H F  GD SHPQ KEIY+ L+ + EK+K  GY P++S VL 
Sbjct: 538 SQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLH 597

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           DI EEEKE     HSEKLA+AFG +NT     +RV KNLR+C DCH+A   IS+++ R++
Sbjct: 598 DISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREV 657

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           IVRD  R+HHF+ G CSC D+W
Sbjct: 658 IVRDINRFHHFKGGCCSCGDYW 679



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 24/200 (12%)

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P     + V      L  L  G  +H H+    +   A++G+ +V  YA  G +D +  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA------- 406
           F  +       +N+MI   A +G A+  +  +F M       D  TF  VL +       
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 407 ----CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
               C H  ++  GLQ   Y+               ++ L G+ G + +A +V  +M + 
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVAT------------SLIILYGKCGEINDAGKVFDNMTIR 235

Query: 463 PNAAVWEALLGACRKHGEVE 482
            + + W ALL    K G ++
Sbjct: 236 -DVSSWNALLAGYTKSGCID 254


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/709 (33%), Positives = 366/709 (51%), Gaps = 94/709 (13%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL---ALK 88
           KT+L   N     S    KQ HA IL++       +S  L      S +SN  L   +L 
Sbjct: 9   KTLLQ--NPSSVKSKSQAKQLHAQILRTSLPSPSLLSTIL------SIYSNLNLLHDSLL 60

Query: 89  VFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +FNS+   P    W S++R    H      +S + +M+     P+   +P+V K+C++ +
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC---VNKARQILDDGSKSDV----- 199
             + G  VH  +++ G+  D++  ++ + MY+ F     VN  +++ D+G  SDV     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 200 ---------------------ICWNALIDGYLKCGDIEGA-------------------- 218
                                + WN +I G  + G  E A                    
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 219 ------KELFKSTKDKNTGSY-------------NAMISGFARFGRFEEARKLFNEMNDK 259
                  E     K K    Y             +++I  +A+  R +++ ++F  +   
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D I+W++II G  ++G + E L+ F +M   KIKP     S ++ ACA L  L  G  +H
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH 360

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            ++ R+    +  + +ALVDMYAKCG +  A  +F+ M++ ++ +W AMI G A+HG A 
Sbjct: 361 GYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAY 420

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           DAI LF +M+ E ++P+ + F  VL+AC+HAG++D   +    M Q Y I P +EHY  +
Sbjct: 421 DAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAV 480

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN- 498
            DLLGR G L EA E IS M +EP  +VW  LL ACR H  +E  E++ K L  ++PQN 
Sbjct: 481 ADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNI 540

Query: 499 -------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         R  D  K+R  M+++G+K  P  S I++   +H F  GD SHP   
Sbjct: 541 GAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYD 600

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
            I   LK ++E+++ EGY  ++++VL D++EE+K      HSE+LAI FG I+T  G TI
Sbjct: 601 RINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTI 660

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RV KNLRVC DCH+ATK ISK+  R+I+VRD  R+HHF++GKCSC DFW
Sbjct: 661 RVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/690 (32%), Positives = 363/690 (52%), Gaps = 88/690 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA +LK   FQ   +    +     S  +    +L++FN++H P    W SV+R   
Sbjct: 26  QQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H  P + +  +  M+     P+   +P+V K+C++      G  +H ++++ GL  D++
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 170 VKSSGIQMYACFGCVNKA--------------------------------RQILDDGSKS 197
             ++ + MY+    + ++                                R+I +   + 
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 198 DVICWNALIDGYLKCG-----------------------------------DIEGAKEL- 221
           D++ WN +I G  + G                                   DI   KE+ 
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIH 262

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               +   D +    +++I  +A+  R  ++ ++F  + ++D I+W++II G  ++G + 
Sbjct: 263 GCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD 322

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           E L  F +M   KIKP+ +  S ++ ACA L  L  G  +H ++ RN    +  + ++LV
Sbjct: 323 EGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 382

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKCG +  A ++F+ M+++++ +W AMI G A+HG+A DAIELF +M+ E ++P+ +
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHV 442

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            F  VL+AC+H G++D   +    M + +GI P VEHY  + DLLGRAG L EA + I  
Sbjct: 443 AFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICG 502

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDV 504
           M + P  ++W  LL ACR H  ++  E++   +LE++P N              RR  + 
Sbjct: 503 MHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEA 562

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           AK R  M+  GI+  P  S I+V   ++ F  GD SHP  ++I   ++ ++E ++ EGY 
Sbjct: 563 AKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYV 622

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P++S+V  D++EE+K+     HSE+LAI FG INT  G TIRV KNLRVC DCH+ATK I
Sbjct: 623 PDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFI 682

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SK+  R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 683 SKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 141/299 (47%), Gaps = 18/299 (6%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+   N+    F+  ++L ++      S    K+ H   ++ G   D YV+ +L+  +A 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDIS--RGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 78  -SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            +R ++   + +VF  + + +   WNS++  C+++      +  + +M+    KP  +++
Sbjct: 287 CTRVAD---SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSF 343

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++  AC+       G Q+H ++ +NG   ++ + SS + MYA  G +  A+QI D    
Sbjct: 344 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKL 252
            D++ W A+I G    G    A ELF+  + +    N  ++ A+++  +  G  +EA K 
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKY 463

Query: 253 FNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           FN M     I      ++A+ D   + G  +EA +    M    I P   + + +L+AC
Sbjct: 464 FNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH---IGPTGSIWATLLSAC 519


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/683 (35%), Positives = 360/683 (52%), Gaps = 81/683 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H   L+ G  Q  + +  L+  +A  +    + +  +F S    ++  WN+++ +  
Sbjct: 217 KQLHGYSLRVGD-QKTFTNNALMAMYA--KLGRVDDSKALFESFVDRDMVSWNTMISSFS 273

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDV 168
           + +     ++ +  MV    + +  T  +V  ACS  E    G ++HA+V++N  L  + 
Sbjct: 274 QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS 333

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----- 223
            V S+ + MY     V   R++ D      +  WNA+I GY + G  E A  LF      
Sbjct: 334 FVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKV 393

Query: 224 -----------------------STKDKNTG------------SYNAMISGFARFGRFEE 248
                                  S K+   G              NA++  ++R G+ + 
Sbjct: 394 AGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDI 453

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-----------------DK 291
           +  +F+ M  +D ++W+ +I GY   G Y  AL + +EMQR                   
Sbjct: 454 SETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGP 513

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            KP    L  VL  CA+L A+ +G  IH +  RN +  D  +G+ALVDMYAKCG L+++ 
Sbjct: 514 YKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 573

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR-----PDRITFACVLSA 406
           +VF +M  K V TWN +I    MHG+ ++A+ELF  M  E  R     P+ +TF  V +A
Sbjct: 574 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 633

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-PNA 465
           C+H+G+I  GL     M+  +G++P  +HY C+VDLLGRAG L EA E++++MP E    
Sbjct: 634 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 693

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLM 511
             W +LLGACR H  VE GE   K LL +EP                   +   ++RK M
Sbjct: 694 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           ++ G+K  PG S I+    +H+F  GD SHPQ ++++  L+ + EK++ EGY P++S VL
Sbjct: 754 RQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL 813

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            ++DE+EKE     HSEKLAIAFG +NT PG TIRV KNLRVC DCH+ATK ISK+ +R+
Sbjct: 814 HNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMERE 873

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD  R+HHF+ G CSC D+W
Sbjct: 874 IIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 209/496 (42%), Gaps = 69/496 (13%)

Query: 50  KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q HA  +K G+      V+ TLV  +   +        KVF+ +   +   WNS + A 
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYG--KCGGIGDVCKVFDRITDRDQVSWNSFIAAL 169

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS---ITEADKEGVQVHAHVVKNGLC 165
               +  + +  +  M   + + + FT  +V  ACS   +    + G Q+H + ++ G  
Sbjct: 170 CRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-D 228

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
                 ++ + MYA  G V+ ++ + +     D++ WN +I  + +      A   F+  
Sbjct: 229 QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 288

Query: 224 --------------------------------------STKDKNTGSYNAMISGFARFGR 245
                                                 +   +N+   +A++  +    +
Sbjct: 289 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ 348

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLA 304
            E  R++F+ +  +    W+A+I GY ++G  ++AL +F EM +   + P    ++ V+ 
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC    A      IH +  +     D  +  AL+DMY++ G++D++  +F+ M++++  +
Sbjct: 409 ACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS 468

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREK-----------------MRPDRITFACVLSAC 407
           WN MI G  + GR  +A+ L  +MQR +                  +P+ IT   VL  C
Sbjct: 469 WNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGC 528

Query: 408 AHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           A    I +G +   Y ++ M   D  V     +VD+  + G L  +  V + MP   N  
Sbjct: 529 AALAAIAKGKEIHAYAIRNMLASDITVG--SALVDMYAKCGCLNLSRRVFNEMP-NKNVI 585

Query: 467 VWEALLGACRKHGEVE 482
            W  L+ AC  HG+ E
Sbjct: 586 TWNVLIMACGMHGKGE 601



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 137/326 (42%), Gaps = 65/326 (19%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W   LR+    N+    IS Y EM    ++P+ F +P V KA S  +  K G Q+HA  V
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K G                                 S V   N L++ Y KCG I     
Sbjct: 120 KFGY------------------------------GSSSVTVANTLVNMYGKCGGIG---- 145

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                                      +  K+F+ + D+D+++W++ I    +   +++A
Sbjct: 146 ---------------------------DVCKVFDRITDRDQVSWNSFIAALCRFEKWEQA 178

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV---DAVLGTAL 337
           LE F  MQ + ++   F L  V  AC++LG +  G+ +   +   S+ V         AL
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLRLGKQLHGYSLRVGDQKTFTNNAL 237

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYAK GR+D +  +FE    +++ +WN MI   +   R  +A+  F  M  E +  D 
Sbjct: 238 MAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDG 297

Query: 398 ITFACVLSACAHAGMIDRGLQALTYM 423
           +T A VL AC+H   +D G +   Y+
Sbjct: 298 VTIASVLPACSHLERLDVGKEIHAYV 323



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +   +W   +   T+   ++EA+  + EM     +P  F    VL A + L  L  G  I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 319 HDH-VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           H   VK         +   LV+MY KCG +    KVF+ +  ++  +WN+ I  L    +
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            + A+E F  MQ E M     T   V  AC++ G+    +  L   +Q++G
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGV----MHGLRLGKQLHG 221


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 369/698 (52%), Gaps = 65/698 (9%)

Query: 12  HHLKPEEISATNIPTSEFSQKTILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGT 70
           + ++ E++  T +        T + ILN    T S +   + H  IL+ G   D +V   
Sbjct: 94  YQMQEEDVMPTKV--------TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTA 145

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +  ++  +   A   F  +   +V  W +++ AC++H++      LY  M      
Sbjct: 146 LINMY--NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 203

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PNK T  TVF A        EG  V+  V    +  DV V +S + M+   G +  AR++
Sbjct: 204 PNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRL 263

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS-----------YNAMIS- 238
            +D    DV+ WN +I  Y++  +   A  LF   +     +           Y ++ S 
Sbjct: 264 FEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSL 323

Query: 239 -------------GFAR-----------FGRFE---EARKLFNEMNDKDEITWSAIIDGY 271
                        G+ R           +GR E   +A K+F +M  KD ITW+ +   Y
Sbjct: 324 AKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAY 383

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            ++G+ KEAL++F EMQ +  +P    L  VL  CA L AL +G  IH H+  N   ++ 
Sbjct: 384 AQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEM 443

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V+ TAL++MY KCG++  A  VFE M  +++  WN+M+G  A HG  D+ ++LF +MQ +
Sbjct: 444 VVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLD 503

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            ++ D ++F  VLSA +H+G +  G Q    M Q + I P  E YGC+VDLLGRAG + E
Sbjct: 504 GVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQE 563

Query: 452 AEEVISSMP-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------- 501
           A +++  +    P+  +W  LLGACR H + +  +   + +LE +P +            
Sbjct: 564 AVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYA 623

Query: 502 -----DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
                D V +MRKLM+ RG+K  PG S I++   +HEF  GD SHP+   IY  L  +  
Sbjct: 624 AAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNS 683

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           +++  GY P++  +L D+++E KE    YHSE+LAIAFG I+T PG  +RVIKNLRVC D
Sbjct: 684 EMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSD 743

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+ATK ISK+  R+I+VRD  R+H+F++G+CSC D+W
Sbjct: 744 CHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 225/472 (47%), Gaps = 45/472 (9%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H ++ H  +   G  Q++ V G L++ +A     +   A +VF  + + +VF W  ++  
Sbjct: 22  HGRRVHWHVRDRGFEQNNLVCGHLIQMYAQC--GSVPEAQQVFEILERKDVFAWTRMIGI 79

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  +  R + ++ +M   D  P K TY  +  AC+ TE+ K+G+++H  +++ G  GD
Sbjct: 80  YCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 139

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK- 226
           V V ++ I MY   G V  A          DV+ W A+I   ++      A+ L++  + 
Sbjct: 140 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQL 199

Query: 227 ------------------DKNTGS--------------------YNAMISGFARFGRFEE 248
                             D N  S                     N+ ++ F   G   +
Sbjct: 200 DGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGD 259

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR+LF +M D+D +TW+ +I  Y ++  + EA+ +F  +Q+D +K        +L    S
Sbjct: 260 ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L +L +G  IH+ VK      DAV+ TAL+ +Y +C     AWK+F DM  K+V TW  M
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMY 427
               A +G   +A++LF +MQ E  RP   T   VL  CAH   + +G Q  ++ ++  +
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            ++  VE    ++++ G+ G +AEA  V   M  + +  VW ++LGA  +HG
Sbjct: 440 RMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHG 488



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 26/314 (8%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  +A+ G   EA+++F  +  KD   W+ +I  Y + G Y  AL +F +MQ + + P 
Sbjct: 45  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 104

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           K     +L ACAS  +L  G+ IH  + +     D  +GTAL++MY KCG +  AW  F+
Sbjct: 105 KVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFK 164

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++ ++V +W AMI     H +   A  L+ +MQ + + P++IT   V +A      +  
Sbjct: 165 RLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 416 GLQALTYMQQMYGI-DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           G     Y     G+ + +V      V++ G AG L +A  +   M ++ +   W      
Sbjct: 225 G--KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTW------ 275

Query: 475 CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVNGVIH 532
                          I++ +  QN    +  ++   +++ G+K N  +   M++V   + 
Sbjct: 276 --------------NIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLT 321

Query: 533 EFRTGDGSHPQVKE 546
               G   H  VKE
Sbjct: 322 SLAKGKVIHELVKE 335



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 179/438 (40%), Gaps = 53/438 (12%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP+   +  + + CS  +    G +VH HV   G   +  V    IQMYA  G V +A+Q
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY---------------- 233
           + +   + DV  W  +I  Y + GD + A  +F   ++++                    
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 234 -----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                                   A+I+ + + G    A   F  +  +D ++W+A+I  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             +   +  A  ++  MQ D + P K  L  V  A      L +G +++  V    +  D
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +  + V+M+   G L  A ++FEDM  ++V TWN +I     +    +A+ LF ++Q+
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           + ++ + ITF  +L+       + +G + +  + +  G D +      ++ L GR     
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR---------C 501
           +A ++   M    +   W  +   C  + +  F +   ++  EM+ + RR          
Sbjct: 360 QAWKIFVDMG-SKDVITWTVM---CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 415

Query: 502 DDVAKMRKLMKERGIKTN 519
           D  A +  L K R I ++
Sbjct: 416 DTCAHLAALQKGRQIHSH 433


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/655 (35%), Positives = 359/655 (54%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H ++ K G   DH+V   LV  +   R    E A  +F+ + + ++  W  ++    E  
Sbjct: 53  HHIVYKFGLDLDHFVCAALVDMYVKCR--EIEDARFLFDKMQERDLVTWTVMIGGYAECG 110

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +    + L+ +M      P+K    TV  AC+   A  +   +  ++ +     DV + +
Sbjct: 111 KANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT 170

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------- 223
           + I MYA  GCV  AR+I D   + +VI W+A+I  Y   G    A +LF+         
Sbjct: 171 AMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLP 230

Query: 224 -------------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLF 253
                          K+   G                    A++  + +    E+AR LF
Sbjct: 231 DKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLF 290

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           ++M ++D +TW+ +I GY + G   E+L +F++M+ + + P K  +  V+ ACA LGA+ 
Sbjct: 291 DKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMH 350

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +   I D+++R    +D +LGTA++DM+AKCG ++ A ++F+ M+ K V +W+AMI    
Sbjct: 351 KARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 410

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG+   A++LF  M R  + P++IT   +L AC+HAG+++ GL+  + M + Y +  +V
Sbjct: 411 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 470

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           +HY C+VDLLGRAG L EA ++I SM +E +  +W A LGACR H +V   E+    LLE
Sbjct: 471 KHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 530

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           ++PQN               R +DVAK R LM +R +K  PG + I+V+   H+F  GD 
Sbjct: 531 LQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDT 590

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           +HP+ KEIY MLK +  KL++ GY P+++ VL D+DEE K      HSEKLAIAFG I T
Sbjct: 591 THPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIAT 650

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
                IR+IKNLRVC DCH+  KL+S +  R IIVRD  R+HHF+ G CSC D+W
Sbjct: 651 PEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 198/419 (47%), Gaps = 48/419 (11%)

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           + E++   ++P+ +T P V +AC   +  + G  +H  V K GL  D  V ++ + MY  
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---------- 230
              +  AR + D   + D++ W  +I GY +CG    +  LF+  +++            
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 231 -------GSYN----------------------AMISGFARFGRFEEARKLFNEMNDKDE 261
                  G+ +                      AMI  +A+ G  E AR++F+ M +K+ 
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 197

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           I+WSA+I  Y   G  ++AL++F  M    + P K  L+ +L AC+ L  L  G  IH  
Sbjct: 198 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHI 257

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           V +  + +D  +  ALVDMY KC  ++ A  +F+ M  +++ TW  MIGG A  G A+++
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANES 317

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           + LF KM+ E + PD++    V+ ACA  G + +      Y+Q+      +V     ++D
Sbjct: 318 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK-KFQLDVILGTAMID 376

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500
           +  + G +  A E+   M  E N   W A++ A   HG+       G+  L++ P   R
Sbjct: 377 MHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDLFPMMLR 427



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 2/214 (0%)

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++ G+ K G Y      F E+ R   +P  + L  V+ AC  L  L  G  IH  V +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           + +D  +  ALVDMY KC  ++ A  +F+ M+ +++ TW  MIGG A  G+A++++ LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           KM+ E + PD++    V+ ACA  G + +      Y+Q+      +V     ++D+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRK-KFQLDVILGTAMIDMYAKC 179

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           G +  A E+   M  E N   W A++ A   HG+
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 212


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 288/427 (67%), Gaps = 15/427 (3%)

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
           FG+ ++A  LF+EM  +D ++W++++  Y + G   EAL +F++M+   +KP +  +  +
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+ACA LGALD+G+ +H ++  N I V++++GTALVDMYAKCG++ +A +VF  M+ K+V
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
             WN +I G+A+HG   +A  LF +M+   + P+ ITF  +LSAC+HAGM+D G + L  
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M   YGI+P+VEHYGC++DLL RAG L EA E+I +MPMEPN     ALLG CR HG  E
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 400

Query: 483 FGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
            GE +GK L+ ++P                ++ DD  K+R LMK  GI   PG S+I++ 
Sbjct: 401 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 460

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHS 587
           G++H F  GD SHP+  +IY  L +I  +LK   G+S ++  VL D++EE+KE A   HS
Sbjct: 461 GMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHS 520

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIA+G ++ D    IR++KNLRVC DCH  TKLISKV+ R+IIVRDR R+HHF +G+
Sbjct: 521 EKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGE 580

Query: 648 CSCNDFW 654
           CSC DFW
Sbjct: 581 CSCLDFW 587



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           F   + A  +F+ +   +V  WNS+L    +  +P   ++L+ +M  V  KP + T  ++
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
             AC+   A  +G+ +H ++  N +  +  V ++ + MYA  G ++ A Q+ +     DV
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + WN +I G    G ++ A+ LFK  K    + N  ++ AM+S  +  G  +E +KL + 
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 256 MNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           M+    I      +  +ID   + G  +EA+E+   M    ++P    L  +L  C   G
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNPCALGALLGGCRIHG 397

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
             + G  +   +     C        L ++YA   + D A KV   MK+  +
Sbjct: 398 NFELGEMVGKRLINLQPCHSGRY-ILLSNIYAAAKKWDDARKVRNLMKVNGI 448



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           ++     LA +VFN++   +V  WN+++     H        L+ EM     +PN  T+ 
Sbjct: 260 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFV 319

Query: 138 TVFKACSITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            +  ACS      EG ++   +  + G+   V      I + A  G + +A +++     
Sbjct: 320 AMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPM 379

Query: 197 SDVIC-WNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKL 252
               C   AL+ G    G+ E  + + K   + +  ++G Y  + + +A   ++++ARK+
Sbjct: 380 EPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 439

Query: 253 FNEM 256
            N M
Sbjct: 440 RNLM 443


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/680 (34%), Positives = 369/680 (54%), Gaps = 59/680 (8%)

Query: 29  FSQKTILDILNTKCHTSWQHLKQ-AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           F   T+L +L +     W  L +  H  +LK G+  + ++   L+  ++ S      +A 
Sbjct: 47  FVFTTVLKLLVS---MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVS--GCVSMAR 101

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+ +   ++  W  ++ +  E++     +  +S+M     KPN FT+  V KAC   +
Sbjct: 102 EVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQ 161

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G  VH  V+K     D++V    +++Y   G  + A +   D  K+DVI W+ +I 
Sbjct: 162 NFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMIS 221

Query: 208 GYLKCGDIEGAKELF---------------------------------------KSTKDK 228
            + + G  E A E+F                                       K+    
Sbjct: 222 RFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLST 281

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +    NA+++ +A+ G  E++ +LF  ++D+++++W+ II  Y + G  + AL +F+ M 
Sbjct: 282 DVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNML 341

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           R +++  +   S +L ACA+L AL+ G+ +H    +     D  +G AL+DMYAKCG + 
Sbjct: 342 RYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIK 401

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  +F+ + +++  +WNA+I G +MHG   +AI++F  M+  K +PD +TF  VLSAC+
Sbjct: 402 DARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS 461

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           + G +D G Q  T M+Q YGI+P +EHY C+V L+GR+G L +A + I  +P EP+  +W
Sbjct: 462 NTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIW 521

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
            ALLGAC  H +VE G    + +LE+EP++              RR  +VA +RK MK +
Sbjct: 522 RALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRK 581

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  PG S I+  G +H F   D SH  +K I  ML+ +  K +  GYSP  + VL D+
Sbjct: 582 GVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDV 641

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           +++EKE     HSE+LA+AFG +    G  IR+IKNLR+C DCHS  KLISK+  RDIIV
Sbjct: 642 EDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIV 701

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF NG CSC D+W
Sbjct: 702 RDMNRFHHFENGSCSCADYW 721



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 192/432 (44%), Gaps = 45/432 (10%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           VF+ + + N   + +++    + N+      L++ + G   + N F + TV K     E 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            + G  VH  V+K G   +  + ++ I  Y+  GCV+ AR++ D+ S  D++ W  +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISG----------------------------- 239
           Y +      A E F   +       N   +G                             
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 240 ----------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                     + R G  ++A + F +M   D I WS +I  + + G  ++ALE+F +M+R
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             + P +F  S VL A A + +LD    IH H  +  +  D  +  AL+  YAKCG ++ 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           + ++FE +  +   +WN +I      G  + A+ LF  M R +++   +T++ +L ACA 
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 410 AGMIDRGLQA--LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
              ++ GLQ   LT  + +YG D  V +   ++D+  + G + +A  +   + +    + 
Sbjct: 362 LAALELGLQVHCLT-AKTIYGQDVAVGN--ALIDMYAKCGSIKDARFMFDMLDLRDKVS- 417

Query: 468 WEALLGACRKHG 479
           W A++     HG
Sbjct: 418 WNAIICGYSMHG 429


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/661 (34%), Positives = 361/661 (54%), Gaps = 56/661 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +HL Q +  ++ SG  +  ++    +  +A   F +   A K F  V +P++ +WN++++
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFI--NACLHFGDVNYAHKAFREVSEPDILLWNAIIK 58

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
              + N     I +Y +M      PN FT+  V KAC  T  +  G Q+H    K G   
Sbjct: 59  GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 118

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           +V V++S + MYA FG ++ AR + D      V+ W ++I GY++ GD   A  +FK  +
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178

Query: 227 DKN------------TGSYN---------------------------AMISGFARFGRFE 247
             N            T   N                           ++ + +A+ G  E
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR  FN M   + I W+A+I GY  +GY +EA+++F EM    I+     +   + A A
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            +G+L+   W+  ++ ++    D  + T L+DMYAKCG + +A  VF+ +  K+V  W+ 
Sbjct: 299 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSV 358

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G  +HG   +AI L+ +M++  + P+  TF  +L+AC ++G++  G + L ++   +
Sbjct: 359 MIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWE-LFHLMPDH 417

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI+P  +HY C+VDLLGRAGYL +A + I SMP++P  +VW ALL AC+ H +V  GE  
Sbjct: 418 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIA 477

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + L  ++P N                   VA +R +M ++G+  + G S I++NG +  
Sbjct: 478 AEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLET 537

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F+ GD SHP+ KEI+  L ++ ++LK  GY P+   VL D++ EE E    +HSE+LA+A
Sbjct: 538 FQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVA 597

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           +G I+T PG T+R+ KNLR C +CHSA KLISK+  R+II+RD  R+HHF++G CSC DF
Sbjct: 598 YGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDF 657

Query: 654 W 654
           W
Sbjct: 658 W 658


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/669 (34%), Positives = 364/669 (54%), Gaps = 61/669 (9%)

Query: 44  TSW-----QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98
           +SW     +HL Q +  ++ SG  +  ++    +  +A   F +   A K F  V +P++
Sbjct: 8   SSWMFMLLKHLDQVYVQLIVSGLHKCRFLMIKFI--NACLHFGDVNYAHKAFREVSEPDI 65

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158
            +WN++++   + N     I +Y +M      PN FT+  V KAC  T  +  G Q+H  
Sbjct: 66  LLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQ 125

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
             K G   +V V++S + MYA FG ++ AR + D      V+ W ++I GY++ GD   A
Sbjct: 126 TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEA 185

Query: 219 KELFKSTKDKN------------TGSYN---------------------------AMISG 239
             +FK  +  N            T   N                           ++ + 
Sbjct: 186 LNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM 245

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G  E AR  FN M   + I W+A+I GY  +GY +EA+++F EM    I+     +
Sbjct: 246 YAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITM 305

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              + A A +G+L+   W+  ++ ++    D  + T L+DMYAKCG + +A  VF+ +  
Sbjct: 306 RSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD 365

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K+V  W+ MI G  +HG   +AI L+ +M++  + P+  TF  +L+AC ++G++  G + 
Sbjct: 366 KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWE- 424

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           L ++   +GI+P  +HY C+VDLLGRAGYL +A + I SMP++P  +VW ALL AC+ H 
Sbjct: 425 LFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHR 484

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
           +V  GE   + L  ++P N                   VA +R +M ++G+  + G S I
Sbjct: 485 KVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 544

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           ++NG +  F+ GD SHP+ KEI+  L ++ ++LK  GY P+   VL D++ EE E    +
Sbjct: 545 EINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCH 604

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSE+LA+A+G I+T PG T+R+ KNLR C +CHSA KLISK+  R+II+RD  R+HHF++
Sbjct: 605 HSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKD 664

Query: 646 GKCSCNDFW 654
           G CSC DFW
Sbjct: 665 GVCSCGDFW 673


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/672 (35%), Positives = 360/672 (53%), Gaps = 71/672 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +L++G ++  + +  LV  +A  +      A  +F+     ++  WN+++ + L
Sbjct: 207 KQVHAFVLRNGDWRT-FTNNALVTMYA--KLGRVYEAKTLFDVFDDKDLVSWNTIISS-L 262

Query: 110 EHNEPWRVISLYSE-MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV-KNGLCGD 167
             N+ +    LY   M+    +PN  T  +V  ACS  E    G ++HA V+  N L  +
Sbjct: 263 SQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIEN 322

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
             V  + + MY       K R + D   +  +  WNA+I GY++      A ELF     
Sbjct: 323 SFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVF 382

Query: 223 -----------------------------------KSTKDKNTGSYNAMISGFARFGRFE 247
                                              K   +K+    NA++  ++R GR E
Sbjct: 383 ELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIE 442

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---------------- 291
            AR +F  MN KD ++W+ +I GY   G + +AL + ++MQR +                
Sbjct: 443 IARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKN 502

Query: 292 --IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             +KP    L  VL  CA+L AL +G  IH +  +  +  D  +G+ALVDMYAKCG L++
Sbjct: 503 FPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNL 562

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-----KMRPDRITFACVL 404
           +  VFE M ++ V TWN +I    MHG+ ++A++LF +M  E     ++RP+ +T+  + 
Sbjct: 563 SRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIF 622

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-P 463
           ++ +H+GM+D GL     M+  +GI+P  +HY C+VDLLGR+G + EA  +I +MP    
Sbjct: 623 ASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMK 682

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMR-KLMKERGIKTNPGS 522
               W +LLGAC+ H  +E GE   K L  ++P          M  + MKE+G++  PG 
Sbjct: 683 KVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVLDYGTKQSMLGRKMKEKGVRKEPGC 742

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+    +H+F  GD SHPQ KE++  L+ +  ++K EGY P++S VL ++ EEEKET 
Sbjct: 743 SWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETM 802

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSE+LAIAFG +NT PG TIRV KNLRVC DCH ATK ISK+  R+II+RD  R+HH
Sbjct: 803 LCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHH 862

Query: 643 FRNGKCSCNDFW 654
           FRNG CSC D+W
Sbjct: 863 FRNGTCSCGDYW 874



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 217/511 (42%), Gaps = 67/511 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA + K G      V  +LV  +   +  + + A +VF+ +   +   WNS++ A  
Sbjct: 105 KQLHAHVFKFGQALPTAVPNSLVNMYG--KCGDIDAARRVFDEITNRDDVSWNSMINAAC 162

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDV 168
              E    + L+  M+  +  P  FT  +V  ACS +      G QVHA V++NG     
Sbjct: 163 RFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRT 221

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------------- 209
              ++ + MYA  G V +A+ + D     D++ WN +I                      
Sbjct: 222 FTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 210 ---------------------LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                                L CG    A  L  +   +N+    A++  +    + E+
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEK 341

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACA 307
            R +F+ M  +    W+A+I GY ++ +  EA+E+F EM  +  + P    LS VL AC 
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACV 401

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
              +      IH  V +     D  +  AL+DMY++ GR+++A  +F  M  K++ +WN 
Sbjct: 402 RCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNT 461

Query: 368 MIGGLAMHGRADDAIELFFKMQREK------------------MRPDRITFACVLSACAH 409
           MI G  + GR DDA+ L   MQR +                  ++P+ +T   VL  CA 
Sbjct: 462 MITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAA 521

Query: 410 AGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
              + +G +   Y ++QM   D  V     +VD+  + G L  +  V   M +  N   W
Sbjct: 522 LAALGKGKEIHAYAVKQMLSKDVAVG--SALVDMYAKCGCLNLSRTVFEQMSVR-NVITW 578

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR 499
             L+ A   HG+ E   +L + ++E    NR
Sbjct: 579 NVLIMAYGMHGKGEEALKLFRRMVEEGDNNR 609



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 174/398 (43%), Gaps = 69/398 (17%)

Query: 101 WNSVLRACLEHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           W S LR+  + +  + + IS Y+ MV     P+ F +P V KA +       G+Q     
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATA-------GIQ----- 99

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
                  D+++   G Q++A          +   G        N+L++ Y KCGDI+   
Sbjct: 100 -------DLNL---GKQLHA---------HVFKFGQALPTAVPNSLVNMYGKCGDIDA-- 138

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                        AR++F+E+ ++D+++W+++I+   +   ++ 
Sbjct: 139 -----------------------------ARRVFDEITNRDDVSWNSMINAACRFEEWEL 169

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASL-GALDQGIWIHDHVKRNSICVDAVLGTALV 338
           A+ +F  M  + + P  F L  V  AC++L   L  G  +H  V RN          ALV
Sbjct: 170 AVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDW-RTFTNNALV 228

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            MYAK GR+  A  +F+    K++ +WN +I  L+ + R ++A+     M +  +RP+ +
Sbjct: 229 TMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRAGYLAEAEEVIS 457
           T A VL AC+H  M+  G +   ++  M     E    GC +VD+        +   V  
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFV-LMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFD 347

Query: 458 SMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLEM 494
            M      AVW A++ G  R   + E  E   +++ E+
Sbjct: 348 GM-FRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL 384


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/656 (35%), Positives = 364/656 (55%), Gaps = 56/656 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA + K GH  D +V   L+   A S   N + A +VF+ ++  ++  W  ++    E+ 
Sbjct: 127 HAYVYKLGHQADAFVGTALID--AYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY 184

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                + L+ +M  +  +PN FT     K+C+  EA K G  VH   +K     D++V  
Sbjct: 185 CHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGI 244

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---------- 222
           + +++Y   G + +A+Q  ++  K D+I W+ +I  Y +    + A ELF          
Sbjct: 245 ALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV 304

Query: 223 ------------------------------KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                                         K   D N    NA++  +A+ G  E + KL
Sbjct: 305 PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F    +K+E+ W+ II GY + G  ++AL +F+ M    I+P +   S VL A ASL AL
Sbjct: 365 FTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVAL 424

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
           + G  IH    +     D+V+  +L+DMYAKCGR+D A   F+ M  ++  +WNA+I G 
Sbjct: 425 EPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGY 484

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           ++HG   +A+ LF  MQ+   +P+++TF  VLSAC++AG++D+G      M Q YGI+P 
Sbjct: 485 SIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPC 544

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +EHY C+V LLGR+G   EA ++I  +P +P+  VW ALLGAC  H  ++ G+   + +L
Sbjct: 545 IEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVL 604

Query: 493 EMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           EMEPQ+              +R D+VA +RK MK++ +K  PG S ++  GV+H F  GD
Sbjct: 605 EMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGD 664

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHP +K I+ ML+ + +K +  GY P+ S VL D++++EKE     HSE+LA+AFG I 
Sbjct: 665 TSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQ 724

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              G +IR+IKNLR+C DCH+  KL+SK+ +R+I++RD  R+HHFR G CSC D+W
Sbjct: 725 IPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 201/472 (42%), Gaps = 48/472 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ILK G   D +    L+  + +  F   E A K+F+ +   N   + ++ +   
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYVH--FGFLEDASKLFDEMPLTNTVSFVTLAQGFS 80

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             ++  R   L   +     + N+F + T+ K     +     + VHA+V K G   D  
Sbjct: 81  RSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAF 140

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           V ++ I  Y+  G V+ ARQ+ D     D++ W  ++  Y +                  
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 212 --------------CGDIEGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                         C  +E  K          K   D++     A++  + + G   EA+
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           + F EM   D I WS +I  Y +    KEALE+F  M Q   + P  F  + VL ACASL
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             L+ G  IH  V +  +  +  +  AL+D+YAKCG ++ + K+F     K    WN +I
Sbjct: 321 VLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTII 380

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQQMY 427
            G    G  + A+ LF  M    ++P  +T++ VL A A    ++ G Q  +LT ++ MY
Sbjct: 381 VGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLT-IKTMY 439

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             D  V +   ++D+  + G + +A      M  +   + W AL+     HG
Sbjct: 440 NKDSVVAN--SLIDMYAKCGRIDDARLTFDKMDKQDEVS-WNALICGYSIHG 488



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 37/319 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            Q H+ +LK G   + +VS  L+  +A  +    E ++K+F    + N   WN+++   +
Sbjct: 327 NQIHSCVLKVGLDSNVFVSNALMDVYA--KCGEIENSVKLFTGSTEKNEVAWNTIIVGYV 384

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +  + ++L+S M+G+D +P + TY +V +A +   A + G Q+H+  +K     D  
Sbjct: 385 QLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV 444

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           V +S I MYA  G ++ AR   D   K D + WNALI GY   G    A  LF    +S 
Sbjct: 445 VANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSN 504

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT-------KDGYYK 278
              N  ++  ++S  +  G  ++ R  F  M     I     I+ YT       + G + 
Sbjct: 505 SKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI--EPCIEHYTCMVWLLGRSGQFD 562

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL----- 333
           EA+++  E+     +P   V   +L AC           IH ++    +C   VL     
Sbjct: 563 EAVKLIGEI---PFQPSVMVWRALLGACV----------IHKNLDLGKVCAQRVLEMEPQ 609

Query: 334 ----GTALVDMYAKCGRLD 348
                  L +MYA   R D
Sbjct: 610 DDATHVLLSNMYATAKRWD 628


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 350/597 (58%), Gaps = 23/597 (3%)

Query: 76   ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
            A ++    + A  +F+ +  PNV  WN+++    ++        L+ +M       N  +
Sbjct: 467  AYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM----PVKNSAS 522

Query: 136  YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI----L 191
            +  +       E  +E +++   + ++G        +S +   A  G V   R I    +
Sbjct: 523  WAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAI 582

Query: 192  DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
              G + +    N LI  Y KCG++E    +F++ + K+T S+N++ISG +     ++AR 
Sbjct: 583  KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARV 642

Query: 252  LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            +F +M  +D ++W+AII  Y + G+ + AL++F +M    IKP +  ++ +L+AC +LGA
Sbjct: 643  VFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 702

Query: 312  LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
            +  G   H  + +        +G +L+ MY KCG  D  + VFE+M   ++ TWNA++ G
Sbjct: 703  IKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVG 761

Query: 372  LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             A +G   +AI++F +M+ E + PD+++F  VL AC+HAG++D G      M Q YGI P
Sbjct: 762  CAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMP 821

Query: 432  EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             V HY C+VDLLGRAGYL+EAE +I +MP++P++ +WEALLGACR H  VE G+R+ + L
Sbjct: 822  LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881

Query: 492  LEM-EPQNRR-------------CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
             +M +P++                D VA++RKLMK++G+   PG S I V   +H F TG
Sbjct: 882  FQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTG 941

Query: 538  DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
            D +H Q++EIY  LK+     +  GY P+++ VL D++EE+K+    YHSEKLA+ FG +
Sbjct: 942  DRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGIL 1001

Query: 598  NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +T  G+ I++IKNLR+C DCH+  K +SKV  R II+RD  R+HHFR+G CSC D+W
Sbjct: 1002 STPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 213/449 (47%), Gaps = 56/449 (12%)

Query: 38  LNTKCHTSWQ-HLKQAHAVIL-KSGHFQDHYVSGTLVKCHAN----SRFSNFELALKVFN 91
           LNT+ H  W  +L+Q   VI  KSG          L +C+       R    E A +VFN
Sbjct: 137 LNTR-HARWMDYLQQFKFVIRHKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFN 195

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + +V  WNS++               YS+   VD     F                 
Sbjct: 196 EMIQRDVVSWNSMING-------------YSQNGKVDEARLLFD---------------- 226

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
                A V KN     +   +  +  YA  G + +AR++ +  ++ +V+ WNA+I GY++
Sbjct: 227 -----AFVGKN-----IRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQ 276

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
            GD++ A++LF    +KN  S+N++++G+    R  EAR+LF++M +++ ++W  +I GY
Sbjct: 277 NGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGY 336

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
                Y EA +VF +M R   +P + +   VL+A   L  L+    +     +     D 
Sbjct: 337 VHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDV 396

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V+G+A+++ Y + G LD+A   FE M  +  ++W  MI   A  GR DDAI+L+ ++  +
Sbjct: 397 VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            +     T   +++A A  G I +       +     ++P V  +  I+    + G L E
Sbjct: 457 TV----ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKE 507

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGE 480
           A+++   MP++ N+A W A++    ++ E
Sbjct: 508 AKDLFQKMPVK-NSASWAAMIAGFVQNEE 535



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 215/482 (44%), Gaps = 68/482 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+ + + N   W  ++   +  ++ W    ++ +M    ++P++  +  V  A + 
Sbjct: 314 ARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITG 373

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +  +    +    +K G  GDV V S+ +  Y   G ++ A    +   + +   W  +
Sbjct: 374 LDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTM 433

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  + +CG ++ A +L++   ++   +  AM++ +A+ GR ++AR +F+E+ + + + W+
Sbjct: 434 IAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWN 493

Query: 266 AIIDGYTKDGYYKEA-------------------------------LEVFNEMQRDKIKP 294
           AII GYT++G  KEA                               LE+  E+ R    P
Sbjct: 494 AIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVP 553

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
                +  L+ACA++G ++ G  IH    +     ++ +   L+ MYAKCG ++    VF
Sbjct: 554 SDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVF 613

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADD-------------------------------AIE 383
             +++K+  +WN++I GL+ +   DD                               A++
Sbjct: 614 RTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALD 673

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF  M    ++P+++T   +LSAC + G I  G Q    + ++ G D  +     ++ + 
Sbjct: 674 LFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKL-GFDTFLFVGNSLITMY 732

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
            + GY  +   V   MP E +   W A+L  C ++G    G+   KI  +ME +    D 
Sbjct: 733 FKCGY-EDGFCVFEEMP-EHDLITWNAVLVGCAQNG---LGKEAIKIFEQMEVEGILPDQ 787

Query: 504 VA 505
           ++
Sbjct: 788 MS 789


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 317/555 (57%), Gaps = 55/555 (9%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACF--GCVNKARQILDDGSKSDVICWNALIDGY--- 209
           + AH+V+  L  D  + S  I+  A    G V  A +I       ++  WN +I GY   
Sbjct: 26  IQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSIS 85

Query: 210 ----------------------------LK--------CGDIEGAKELFKSTKDKNTGSY 233
                                       LK        C   E   ++ K   D  T   
Sbjct: 86  DSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLV 145

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I  +A  G  + A  +F+EM + D  +WS ++ GY ++G   EAL++F EMQ + + 
Sbjct: 146 NGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVS 205

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
              F L+ V+  C  LGALD G W+H ++ +  + +D VLGTALV MY+KCG LD A KV
Sbjct: 206 SDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKV 265

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++V  W+ MI G A+HG  + A++LF  M+R K  P+ +TF  VLSAC+H+G++
Sbjct: 266 FQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLV 325

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           ++G Q    M   Y I P+++HYGC+VDL  RAG +  A + I +MP+EPN  +W  LLG
Sbjct: 326 EKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLG 385

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           AC+ HG  + GE + + +L+++P +               R   V ++R LMK++  K  
Sbjct: 386 ACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQ 445

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
            G S I++N ++H+F  GD SHP+ ++IY ML ++  KLK  G+  ++  VL DIDEEEK
Sbjct: 446 HGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEK 505

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E A   HSE+LAIA+G ++T  G+ IR++KNLRVC DCH   KLIS+V+ R+IIVRDRVR
Sbjct: 506 EYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVR 565

Query: 640 YHHFRNGKCSCNDFW 654
           +HHFR   CSCND+W
Sbjct: 566 FHHFRERGCSCNDYW 580



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 41/372 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LK   A ++++   QD +++  L++  A +   +   A ++F+  H PN+F+WN+++R  
Sbjct: 23  LKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGY 82

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              + P   I+LY +M      PN +T+  V KAC       EG ++H+ +VK GL  + 
Sbjct: 83  SISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFET 142

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + +  I++YA  GC++ A  + D+  + D   W+ ++ GY + G    A +LF+  + +
Sbjct: 143 PLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAE 202

Query: 229 NTGS---------------------------------------YNAMISGFARFGRFEEA 249
           N  S                                         A++  +++ G  + A
Sbjct: 203 NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNA 262

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            K+F  M ++D   WS +I GY   G+ ++AL++F+ M+R K  P     + VL+AC+  
Sbjct: 263 LKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHS 322

Query: 310 GALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G +++G  I + +     I         +VD++ + G +  A K  + M ++  V  W  
Sbjct: 323 GLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRT 382

Query: 368 MIGGLAMHGRAD 379
           ++G    HG  D
Sbjct: 383 LLGACKTHGYKD 394



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 50  KQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++ H+ I+K G  F+   V+G L+K +A     ++  A  +F+ + +P+   W++++   
Sbjct: 127 QELHSQIVKVGLDFETPLVNG-LIKLYAACGCMDY--ACVMFDEMPEPDSASWSTMVSGY 183

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            ++ +    + L+ EM   +   + FT  +V   C    A   G  VH+++ K G+  DV
Sbjct: 184 AQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDV 243

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + ++ + MY+  G ++ A ++    ++ DV  W+ +I GY   G  E A +LF + K  
Sbjct: 244 VLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRS 303

Query: 229 ----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
               N  ++ +++S  +  G  E+  ++F  M  + +IT     +  ++D + + G    
Sbjct: 304 KTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGH 363

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV- 338
           A +    M    I+P   +   +L AC + G  D G    +H+ R  + +D       V 
Sbjct: 364 AHKFIQTM---PIEPNVVLWRTLLGACKTHGYKDLG----EHISRKILKLDPSSPENYVL 416

Query: 339 --DMYAKCGRLDMAWKVFEDMKMK 360
             ++YA  GR     +V   MK K
Sbjct: 417 VSNVYASLGRWSSVCQVRSLMKDK 440


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 332/574 (57%), Gaps = 55/574 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y +V   C    A +EG +VHAH++K      V++++  I +Y    C+  AR++LD+  
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF--------------------------------- 222
           + +V+ W A+I GY + G    A  LF                                 
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 223 ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                 K++ + +    ++++  +A+ G+  EAR++F+ + ++D ++ +AII GY + G 
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL++F  +QR+ ++      + VL A + L ALD G  +H HV R  +    VL  +
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 252

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRP 395
           L+DMY+KCG L  + ++F+ M  + V +WNAM+ G + HG   +A+ELF  M+ E K++P
Sbjct: 253 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D +TF  VLS C+H GM DRGL+    M  Q  G +PE+EHYGC+VDL GRAG + EA E
Sbjct: 313 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
            I  MP EP AA+W +LLGACR H  V  GE + + LLE+E +N               R
Sbjct: 373 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 432

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            DDV  +R+LMKE+ +   PG S I+++  +H F   D SHP+ +E++  ++++  K+K 
Sbjct: 433 WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 492

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY P  S VL+D+D+E+KE   + HSEKLA+AFG I T  G  +R+IKNLR+C DCH+ 
Sbjct: 493 AGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNF 552

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K +S+V+ R++ +RD+ R+HH   G CSC D+W
Sbjct: 553 AKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 182/385 (47%), Gaps = 47/385 (12%)

Query: 36  DILNTKC--HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV 93
           D + T+C   T+ +  ++ HA ++K+ +    Y+   L+  +   R      A +V + +
Sbjct: 14  DSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC--LGDARRVLDEM 71

Query: 94  HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
            + NV  W +++    +       + L+ EM+   + PN+FT+ TV  +C+ +   + G 
Sbjct: 72  PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 131

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q+H+ V+K      + V SS + MYA  G + +AR++ D   + DV+   A+I GY + G
Sbjct: 132 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 191

Query: 214 DIEGAKELFKSTKDKNTGS---------------------------------------YN 234
             E A +LF+  + +   S                                        N
Sbjct: 192 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQN 251

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIK 293
           ++I  +++ G    +R++F+ M ++  I+W+A++ GY+K G  +EA+E+F  M + +K+K
Sbjct: 252 SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVK 311

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           P       VL+ C+  G  D+G+ I   +  +++    +      +VD++ + GR++ A+
Sbjct: 312 PDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAF 371

Query: 352 KVFEDMKMKEVFT-WNAMIGGLAMH 375
           +  + M  +     W +++G   +H
Sbjct: 372 EFIKKMPFEPTAAIWGSLLGACRVH 396



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 120/278 (43%), Gaps = 26/278 (9%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H +Q H+ +L++       +  +L+  +  S+  +   + ++F+S+ +  V  WN++L  
Sbjct: 230 HGRQVHSHVLRAKLPFYVVLQNSLIDMY--SKCGSLTYSRRIFDSMPERTVISWNAMLVG 287

Query: 108 CLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVV--KNGL 164
             +H      + L+  M   +  KP+  T+  V   CS    +  G+++   +V  K+G 
Sbjct: 288 YSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGF 347

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDG-----YLKCGDIEGA 218
             ++      + ++   G V +A + +     +     W +L+        +  G+    
Sbjct: 348 EPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVAR 407

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI-----TW----SAIID 269
           + L    + +N G+Y  + + +A  GR+++ R +   M +K  I     +W      +  
Sbjct: 408 RLL--EIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHT 465

Query: 270 GYTKDGYYKEALEVFNEMQR--DKIKPRKFV--LSCVL 303
            +  D  +    EVF +++    KIK   +V  LSCVL
Sbjct: 466 FHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVL 503


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 341/618 (55%), Gaps = 51/618 (8%)

Query: 55  VILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           V+      +D     T++  H   +F  F+LAL +F+ +  P++  WNS++         
Sbjct: 201 VVFDRMRLKDTSTWNTMISMHM--QFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYD 258

Query: 115 WRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
            R +  +S M+   S KP+KFT  +V  AC+  E+ K G Q+HAH+V+     DV +   
Sbjct: 259 IRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVR----ADVDIA-- 312

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--STKDKNTG 231
                   G V                  NALI  Y K G +E A  + +   T   N  
Sbjct: 313 --------GAVG-----------------NALISMYAKSGAVEVAHRIVEITGTPSLNVI 347

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           ++ +++ G+ + G  + AR +F+ +  +D + W+A+I GY ++G   +AL +F  M R+ 
Sbjct: 348 AFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREG 407

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            KP  + L+ VL+  +SL +LD G  +H    R        +G AL+ MY++ G +  A 
Sbjct: 408 PKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDAR 467

Query: 352 KVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           K+F  +   ++  TW +MI  LA HG  ++AIELF KM R  ++PD IT+  VLSAC H 
Sbjct: 468 KIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHV 527

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G++++G      M+ ++ I+P   HY C++DLLGRAG L EA   I +MP+EP+   W +
Sbjct: 528 GLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGS 587

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI 516
           LL +CR H  V+  +   + LL ++P N               + +D AK+RK MK++ +
Sbjct: 588 LLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAV 647

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
           K   G S + +   +H F   D  HPQ   IY M+ KI +++K  G+ P+++ VL D+++
Sbjct: 648 KKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQ 707

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           E KE   ++HSEKLAIAF  INT    T+R++KNLRVC DCHSA + IS + +R+IIVRD
Sbjct: 708 EVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRD 767

Query: 637 RVRYHHFRNGKCSCNDFW 654
             R+HHF++G CSC D+W
Sbjct: 768 ATRFHHFKDGSCSCQDYW 785



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 213/462 (46%), Gaps = 72/462 (15%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           T++  HA +   N + A +VF+ + +P+   W +++            +  +  MV    
Sbjct: 84  TILSAHAKA--GNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI 141

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P +FT+  V  +C+  +A   G +VH+ VVK G  G V V +S + MYA          
Sbjct: 142 SPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYA---------- 191

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                                KCGD   AK +F   + K+T ++N MIS   +F +F+ A
Sbjct: 192 ---------------------KCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLA 230

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACAS 308
             LF++M D D ++W++II GY   GY   ALE F+ M +   +KP KF L  VL+ACA+
Sbjct: 231 LALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACAN 290

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK---------------- 352
             +L  G  IH H+ R  + +   +G AL+ MYAK G +++A +                
Sbjct: 291 RESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFT 350

Query: 353 -----------------VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
                            +F+ +K ++V  W AMI G A +G   DA+ LF  M RE  +P
Sbjct: 351 SLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKP 410

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           +  T A VLS  +    +D G Q      ++  +   V     ++ +  R+G + +A ++
Sbjct: 411 NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS-SVSVGNALITMYSRSGSIKDARKI 469

Query: 456 ISSMPMEPNAAVWEALLGACRKHG----EVEFGERLGKILLE 493
            + +    +   W +++ +  +HG     +E  E++ +I L+
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLK 511



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 156/327 (47%), Gaps = 8/327 (2%)

Query: 168 VHVKSSGIQMYACF-GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           VH+  S I+    F G    AR I        V   N L++ Y+K G    A  LF    
Sbjct: 16  VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMP 75

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            K T S+N ++S  A+ G  + AR++F+E+   D ++W+ +I GY   G +K A+  F  
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M    I P +F  + VLA+CA+  ALD G  +H  V +        +  +L++MYAKCG 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
             MA  VF+ M++K+  TWN MI       + D A+ LF +M      PD +++  +++ 
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMT----DPDIVSWNSIITG 251

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEP 463
             H G   R L+  ++M +   + P+    G ++        L   +++   I    ++ 
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDI 311

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKI 490
             AV  AL+    K G VE   R+ +I
Sbjct: 312 AGAVGNALISMYAKSGAVEVAHRIVEI 338


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/606 (35%), Positives = 339/606 (55%), Gaps = 37/606 (6%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHN------------EPWRVISLYSEMVGVDSKPNK 133
           A  VF+ + + N   WN++L A ++++            E W ++S    + G   K   
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKI 235

Query: 134 FTYPTVFKACSITE-----------ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
                 F + ++ +           A    +     +       DV   ++ +  Y    
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNR 295

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
            V +AR++ D   + + + WNA++ GY++   +E AKELF     +N  ++N MI+G+A+
Sbjct: 296 MVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQ 355

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G+  EA+ LF++M  +D ++W+A+I GY++ G+  EAL +F +M+R+  +  +   S  
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+ CA + AL+ G  +H  + +        +G AL+ MY KCG ++ A  +F++M  K++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +WN MI G + HG  + A+  F  M+RE ++PD  T   VLSAC+H G++D+G Q    
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M Q YG+ P  +HY C+VDLLGRAG L +A  ++ +MP EP+AA+W  LLGA R HG  E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 483 FGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             E     +  MEP+N               R  DV K+R  M+++G+K  PG S I++ 
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
              H F  GD  HP+  EI+  L+++  ++K  GY   +S VL D++EEEKE   +YHSE
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSE 715

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LA+A+G +    G  IRVIKNLRVCEDCH+A K ++++  R II+RD  R+HHF++G C
Sbjct: 716 RLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSC 775

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 776 SCGDYW 781



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 175/371 (47%), Gaps = 48/371 (12%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV   ++ +  YA  GCV+ AR + D   + + + WNAL+  Y++   +E A  LFKS +
Sbjct: 156 DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE 215

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +    S+N ++ GF +  +  EAR+ F+ MN +D ++W+ II GY + G   EA ++F+E
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLG----------- 334
                +    F  + +++       +++   + D + +RN +  +A+L            
Sbjct: 276 SPVQDV----FTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMA 331

Query: 335 ---------------TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
                            ++  YA+CG++  A  +F+ M  ++  +W AMI G +  G + 
Sbjct: 332 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSF 391

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG-IDPEVEHYGC 438
           +A+ LF +M+RE  R +R +F+  LS CA        + AL   +Q++G +       GC
Sbjct: 392 EALRLFVQMEREGGRLNRSSFSSALSTCAD-------VVALELGKQLHGRLVKGGYETGC 444

Query: 439 IVD-----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            V      +  + G + EA ++   M  + +   W  ++    +HG   FGE   +    
Sbjct: 445 FVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG---FGEVALRFFES 500

Query: 494 MEPQNRRCDDV 504
           M+ +  + DD 
Sbjct: 501 MKREGLKPDDA 511



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 162/320 (50%), Gaps = 29/320 (9%)

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           AR++ D+  + D++ WN +I GY++  ++  A+ELF+   +++  S+N M+SG+A+ G  
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++AR +F+ M +K++++W+A++  Y ++   +EA  +F   +   +       +C+L   
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLGGF 229

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
                + +     D +       D V    ++  YA+ G++D A ++F++  +++VFTW 
Sbjct: 230 VKKKKIVEARQFFDSMN----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWT 285

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHAGMIDRGLQALTYMQ 424
           AM+ G   +   ++A ELF KM      P+R  +++  +L+            + +   +
Sbjct: 286 AMVSGYIQNRMVEEARELFDKM------PERNEVSWNAMLAGYVQG-------ERMEMAK 332

Query: 425 QMYGIDP--EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +++ + P   V  +  ++    + G ++EA+ +   MP + +   W A++    + G   
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSF 391

Query: 483 FGERLGKILLEMEPQNRRCD 502
              RL    ++ME +  R +
Sbjct: 392 EALRL---FVQMEREGGRLN 408



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 145/300 (48%), Gaps = 28/300 (9%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           SD+  WN  I  Y++ G    A  +FK     ++ SYN MISG+ R G FE ARKLF+EM
Sbjct: 62  SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQ 314
            ++D ++W+ +I GY ++    +A E+F      +I P + V S   +L+  A  G +D 
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELF------EIMPERDVCSWNTMLSGYAQNGCVDD 175

Query: 315 GIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
              + D + ++N +  +A+L       Y +  +++ A  +F+  +   + +WN ++GG  
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSA-----YVQNSKMEEACMLFKSRENWALVSWNCLLGGFV 230

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-- 431
              +  +A + F  M       D +++  +++  A +G ID         +Q++   P  
Sbjct: 231 KKKKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEA-------RQLFDESPVQ 279

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           +V  +  +V    +   + EA E+   MP E N   W A+L    +   +E  + L  ++
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMP-ERNEVSWNAMLAGYVQGERMEMAKELFDVM 338



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 15/219 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  ++K G+    +V   L+  +   +  + E A  +F  +   ++  WN+++    
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYC--KCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 486

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDV 168
            H      +  +  M     KP+  T   V  ACS T    +G Q    + ++ G+  + 
Sbjct: 487 RHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNS 546

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
              +  + +    G +  A  ++ +   + D   W  L    L    + G  EL ++  D
Sbjct: 547 QHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL----LGASRVHGNTELAETAAD 602

Query: 228 K-------NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           K       N+G Y  + + +A  GR+ +  KL   M DK
Sbjct: 603 KIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 641


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/648 (35%), Positives = 355/648 (54%), Gaps = 38/648 (5%)

Query: 41  KCHTSWQHLKQAHAVILKSGHF--QDHYVSGTLVKCHANSRFSNFELALKVFNS------ 92
           +C TS   LK  H+ +   G      H+++  ++     S+  +   A  +F+       
Sbjct: 33  QCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLII---LYSKLGDLHSARTLFDHRHHHHH 89

Query: 93  --VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
                PN F+ N++LRA       +  I LY  M  +    N FTYP V K C+      
Sbjct: 90  GHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G  VH  VV+ G   D+ V+++ + MYA  G +  A ++ D     DV+CW A+I  Y 
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 211 KCGDIEGAKELFKSTKDKN-TGSYNAMISGFARFGRF-------EEARKLFNEMNDKDEI 262
           +      A  LF+  +++   G     IS  +  G+          AR +F+ M +++ I
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGI 269

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W++++ GYT++G   +AL +FN+MQ  +  P       +++AC+ LG+   G  +H+ V
Sbjct: 270 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 329

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADD 380
             + + +D  L  A++DMY KCG LD A ++F + ++ E  V +WN +I G  +HG   +
Sbjct: 330 ISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKE 389

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+ELF +MQ E + P+ ITF  +LSAC+HAG+ID G +    M ++  + PE++HY C+V
Sbjct: 390 ALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMV 448

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--- 497
           D+LGRAG+L EA  +I  +P  P+  VW ALL ACR HG  E GE     L ++EP+   
Sbjct: 449 DMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTG 508

Query: 498 -----------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                      + +  +V  +R+ MK RG+K     S+I+    +H F T D S P  +E
Sbjct: 509 YYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYRE 568

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           +Y  ++ +  ++KM GY P+ S VL D++ E+KE    YHSEKLA+AFG +  D G  I+
Sbjct: 569 VYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQ 628

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V KNLRVC DCH A K IS ++ R IIVRD  R+HHF+ G+CSC D+W
Sbjct: 629 VTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 320/578 (55%), Gaps = 54/578 (9%)

Query: 131 PNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           P+  T+P   K+ S +    + G Q+HA  +K     + HV +S + +YA  G +++A++
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----------------------TKD 227
           + D+      + W ALI  Y+  GD+  A  + ++                        D
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 228 KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
             TG                    A +  + + G   +AR++F++M DKD + W A++ G
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 294

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y  +G+ +EAL++F  MQ + ++P  + ++  L+AC  LGALD G      V  +    +
Sbjct: 295 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 354

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            VLGTAL+DMYAKCG    AW VF+ M+ K++  WNAMI GL M G    A  L  +M++
Sbjct: 355 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 414

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             ++ +  TF  +L +C H G+I  G +    M ++Y I P +EHYGCIVDLL RAG L 
Sbjct: 415 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 474

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA ++I  MPM  NA +  ALLG C+ H   E  E +   L+ +EP N            
Sbjct: 475 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 534

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R +D AK+R  MKE+G++  P  S ++  G +HEFR GD SHP   +IY  L ++  
Sbjct: 535 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 594

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GY P +  V+FD+++EEKE    +HSEKLAIAF  + T PG TIRV KNLRVC D
Sbjct: 595 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSD 654

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+A KLIS++  R+IIVRD  R+H FR+G CSCND+W
Sbjct: 655 CHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 43/382 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA  LK     + +V  +L+  +A  R      A +VF+ +  P+   W +++ A +
Sbjct: 138 EQLHARSLKLPSHTNPHVLTSLLTLYA--RCGLLHRAQRVFDEMPHPSTVSWTALITAYM 195

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    + +         +P+ FT   V  AC+       G  V     + G+   V 
Sbjct: 196 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 255

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + +Y   G + KAR++ D     D + W A++ GY   G    A +LF + + + 
Sbjct: 256 VATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG 315

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N     A+I  +A+ G   EA 
Sbjct: 316 VRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAW 375

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F +M  KD I W+A+I G    G+ K A  +  +M++  +K        +L +C   G
Sbjct: 376 VVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTG 435

Query: 311 ALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            +  G  + H+  K   I         +VD+ ++ G L  A ++ +DM M        A+
Sbjct: 436 LIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGAL 495

Query: 369 IGGLAMHGRADDAIELFFKMQR 390
           +GG  +H  A+ A  +  ++ R
Sbjct: 496 LGGCKIHRNAELAEHVLTQLIR 517


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/657 (33%), Positives = 363/657 (55%), Gaps = 29/657 (4%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHA---VILKSGHFQDHYVSGTLVKCH 75
           + A  + +S    + + D +  K   S+  +  +HA   ++  + H+ D       V  +
Sbjct: 176 LHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWN 235

Query: 76  ----ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
               A  R    + A ++F+S  + +   WN+++   ++ ++      ++++M   D   
Sbjct: 236 GMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS 295

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
                    +   + EA +        +       DV   ++ +  YA  G + +A+++ 
Sbjct: 296 WNTMVSGYARRGDMAEARR--------LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF 347

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
           D     + + WNA++  Y++   +E AKELF +   +N  S+N M++G+A+ G  +EAR 
Sbjct: 348 DAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARA 407

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F  M  KD ++W+A++  Y++ G+ +E L++F EM R      +   +CVL+ CA + A
Sbjct: 408 IFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAA 467

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L+ G+ +H  + +    V   +G AL+ MY KCG ++ A   FE+M+ ++V +WN MI G
Sbjct: 468 LECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAG 527

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A HG   +A+E+F  M++   +PD IT   VL+AC+H+G++++G+     M + +G+  
Sbjct: 528 YARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVAT 587

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           + EHY C++DLLGRAG L EA  ++  MP EP++ +W ALLGA R H   E G    + +
Sbjct: 588 KPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKI 647

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            E+EP+N               +  DV KMR +M ERG+K  PG S I+V   +H F  G
Sbjct: 648 FELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVG 707

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D  HP+ ++IY  L+ +  ++K  GY   +  VL D++EEEKE   KYHSEKLA+A+G +
Sbjct: 708 DSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGIL 767

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              PG  IRVIKNLRVC DCH+A K IS +  R II+RD  R+HHFR+G CSC D+W
Sbjct: 768 KIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 203/437 (46%), Gaps = 40/437 (9%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           AN R      AL  F S+ +P+ F +N++L A    +    V +L+ EM   DS      
Sbjct: 150 ANGRLPQ---ALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDS------ 200

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
               +     + A+   V +  H        D    +  +  Y   G + +AR++ D  +
Sbjct: 201 --VSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRT 258

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + D I WNAL+ GY++   IE A+++F     ++  S+N M+SG+AR G   EAR+LF+ 
Sbjct: 259 EWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDV 318

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALD 313
              +D  TW+AI+ GY ++G  +EA  VF+ M      P K  +S   ++AA      ++
Sbjct: 319 APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKNAVSWNAMMAAYVQRRMME 372

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +   + D +     C +      ++  YA+ G LD A  +F  M  K+  +W AM+   +
Sbjct: 373 EAKELFDAMP----CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYS 428

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPE 432
             G +++ ++LF +M R     +R  FACVLS CA    ++ G+Q  + + +  YG+   
Sbjct: 429 QIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGV--- 485

Query: 433 VEHYGCIVD-----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
               GC V      +  + G + EA      M  E +   W  ++    +HG   FG+  
Sbjct: 486 ----GCFVGNALLAMYFKCGSMEEAHSAFEEME-ERDVVSWNTMIAGYARHG---FGKEA 537

Query: 488 GKILLEMEPQNRRCDDV 504
            ++   M   + + DD+
Sbjct: 538 LEVFDTMRKTSTKPDDI 554



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 147/358 (41%), Gaps = 50/358 (13%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           +V  ++  I  +   G V  A ++     +     +N ++ GY   G +  A   F+S  
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
             ++ SYN ++          + R LF+EM  KD ++++ +I  +   G    A   F+ 
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFD- 224

Query: 287 MQRDKIKPRKFVLSC--VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
                + P K  +S   +LAA    G + +   + D    +    DA+   AL+  Y + 
Sbjct: 225 -----LAPEKDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAISWNALMAGYVQR 275

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP--DRITFAC 402
            +++ A K+F  M  ++V +WN M+ G A  G   +A  LF       + P  D  T+  
Sbjct: 276 SQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIRDVFTWTA 329

Query: 403 VLSACAHAGMIDRGLQALTYM------------------------QQMYGIDP--EVEHY 436
           ++S  A  GM++   +    M                        ++++   P   V  +
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW 389

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
             ++    +AG L EA  +   MP + +A  W A+L A   + ++ F E   ++  EM
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMP-QKDAVSWAAMLAA---YSQIGFSEETLQLFKEM 443


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/670 (36%), Positives = 359/670 (53%), Gaps = 98/670 (14%)

Query: 11  PHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILK---SGHFQDHYV 67
           P HL P  IS ++  T     + +L  LN+ C T    LKQ HA  ++   S H    ++
Sbjct: 10  PSHL-PHAISNSDSFTH---HRRLLLFLNS-C-TCISQLKQLHAQTIRTTSSHHPNTFFL 63

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLYSEMVG 126
              ++     S   +   A +VF+ +  PN F+WN+++RAC    +     I+LY  M+ 
Sbjct: 64  YSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLE 120

Query: 127 VDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
             S   +K T+P V KAC+   A  EG Q+HA                            
Sbjct: 121 QGSVMQDKHTFPFVLKACAYLFALSEGEQIHA---------------------------- 152

Query: 186 KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGR 245
              QIL  G  SDV   N+L+  Y  C                                R
Sbjct: 153 ---QILKLGFDSDVYINNSLVHFYATCD-------------------------------R 178

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            + A+ +F+ M+++  ++W+ +ID + + G +  AL +F EMQ+   +P  + +  +  A
Sbjct: 179 LDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQK-FFEPDGYTIQSIANA 237

Query: 306 CASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           CA +G+L  G+W H  + +        D +L T+LVDMY KCG L++A ++F  M  ++V
Sbjct: 238 CAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDV 297

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALT 421
            +WN+MI G + HG    A+E F  M R EK+ P+ ITF  VLSAC H G++  G +   
Sbjct: 298 TSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFD 357

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC-RKHGE 480
            M   Y I PE+EHYGC+VDLL RAG + EA +V+S+MPM P+  +W +LL AC +++  
Sbjct: 358 VMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAG 417

Query: 481 VEFGERLGKILLEME---------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMI 525
           VE  E + + +LE E                   R +DV  +RKLM ++G+   PG S I
Sbjct: 418 VELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSI 477

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV-LFDIDEEEKETAPK 584
           +++GV HEF  GD SHPQ +EIY  L  I E+++  GYSP+SSQ  + D   + K+ + +
Sbjct: 478 EIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLR 537

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSE+LAIAFG + T PG  IR+ KNLRVC +CH  TKLIS+VF R+IIVRDR+R+HHF+
Sbjct: 538 LHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFK 597

Query: 645 NGKCSCNDFW 654
           +G CSC D+W
Sbjct: 598 DGACSCMDYW 607


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/658 (34%), Positives = 362/658 (55%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H +++KSG   D +    L   +A  R      A KVF+ + + ++  WN+++    
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCR--QVHEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + + + M   + KP+  T  +V  A S     + G ++H + ++ G    V+
Sbjct: 213 QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           + ++ + MYA  G +  AR + D   + +V+ WN++ID Y++                  
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 212 -----------------CGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEAR 250
                             GD+E  + + K +     D+N    N++IS + +    + A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F ++  +  ++W+A+I G+ ++G   EAL  F++MQ   +KP  F    V+ A A L 
Sbjct: 393 SMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELS 452

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 WIH  V RN +  +  + TALVDMYAKCG + +A  +F+ M  + V TWNAMI 
Sbjct: 453 ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    A+ELF +MQ+  +RP+ +TF  V+SAC+H+G+++ GL+    M++ Y I+
Sbjct: 513 GYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIE 572

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRAG L EA + I  MP++P   V+ A+LGAC+ H  V F E++ + 
Sbjct: 573 PSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAER 632

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L E+ P++                 + V ++R  M  +G++  PG SM+++   +H F +
Sbjct: 633 LFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HP  K+IY  L+K+I ++K  GY P+++ +L  ++++ KE     HSEKLAI+FG 
Sbjct: 693 GSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGL 751

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G TI V KNLRVC DCH+ATK IS V  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/564 (22%), Positives = 243/564 (43%), Gaps = 77/564 (13%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
           IP + +     L  L  +C +S + L+    +I K+G +Q+H     LV      R+ + 
Sbjct: 31  IPANVYEHPAAL--LLERC-SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFC--RYGSV 85

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           + A +VF  + K    ++ ++L+   + ++  + +  +  M   + +P  + +  + K C
Sbjct: 86  DEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVC 145

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
                 + G ++H  +VK+G   D+   +    MYA    V++AR++ D   + D++ WN
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWN 205

Query: 204 ALIDGYLKCGDIEGAKEL---------------------------------------FKS 224
            ++ GY + G    A E+                                        ++
Sbjct: 206 TIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA 265

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             D       A++  +A+ G  + AR LF+ M +++ ++W+++ID Y ++   KEA+ +F
Sbjct: 266 GFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIF 325

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M  + +KP    +   L ACA LG L++G +IH       +  +  +  +L+ MY KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKC 385

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +D A  +F  ++ + + +WNAMI G A +GR  +A+  F +MQ   ++PD  T+  V+
Sbjct: 386 KEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVI 445

Query: 405 SACA------HAGMI---------DRGLQALTYMQQMYG---------------IDPEVE 434
           +A A      HA  I         D+ +   T +  MY                 +  V 
Sbjct: 446 TAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +  ++D  G  G    A E+   M    + PN   + +++ AC   G VE G +   ++
Sbjct: 506 TWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMM 565

Query: 492 LEMEPQNRRCDDVAKMRKLMKERG 515
            E        D    M  L+   G
Sbjct: 566 KENYSIEPSMDHYGAMVDLLGRAG 589


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 332/574 (57%), Gaps = 55/574 (9%)

Query: 136  YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
            Y +V   C    A +EG +VHAH++K      V++++  I +Y    C+  AR++LD+  
Sbjct: 480  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 196  KSDVICWNALIDGYLKCGDIEGAKELF--------------------------------- 222
            + +V+ W A+I GY + G    A  LF                                 
Sbjct: 540  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 223  ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                  K++ + +    ++++  +A+ G+  EAR++F+ + ++D ++ +AII GY + G 
Sbjct: 600  IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 277  YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             +EAL++F  +QR+ ++      + VL A + L ALD G  +H HV R  +    VL  +
Sbjct: 660  DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 719

Query: 337  LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRP 395
            L+DMY+KCG L  + ++F+ M  + V +WNAM+ G + HG   +A+ELF  M+ E K++P
Sbjct: 720  LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 396  DRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
            D +TF  VLS C+H GM DRGL+    M  Q  G +PE+EHYGC+VDL GRAG + EA E
Sbjct: 780  DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 455  VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
             I  MP EP AA+W +LLGACR H  V  GE + + LLE+E +N               R
Sbjct: 840  FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 899

Query: 501  CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DDV  +R+LMKE+ +   PG S I+++  +H F   D SHP+ +E++  ++++  K+K 
Sbjct: 900  WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 959

Query: 561  EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
             GY P  S VL+D+D+E+KE   + HSEKLA+AFG I T  G  +R+IKNLR+C DCH+ 
Sbjct: 960  AGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNF 1019

Query: 621  TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             K +S+V+ R++ +RD+ R+HH   G CSC D+W
Sbjct: 1020 AKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 182/385 (47%), Gaps = 47/385 (12%)

Query: 36  DILNTKC--HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV 93
           D + T+C   T+ +  ++ HA ++K+ +    Y+   L+  +   R      A +V + +
Sbjct: 481 DSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC--LGDARRVLDEM 538

Query: 94  HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
            + NV  W +++    +       + L+ EM+   + PN+FT+ TV  +C+ +   + G 
Sbjct: 539 PERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGR 598

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q+H+ V+K      + V SS + MYA  G + +AR++ D   + DV+   A+I GY + G
Sbjct: 599 QIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLG 658

Query: 214 DIEGAKELFKSTKDKNTGS---------------------------------------YN 234
             E A +LF+  + +   S                                        N
Sbjct: 659 LDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQN 718

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIK 293
           ++I  +++ G    +R++F+ M ++  I+W+A++ GY+K G  +EA+E+F  M + +K+K
Sbjct: 719 SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVK 778

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           P       VL+ C+  G  D+G+ I   +  +++    +      +VD++ + GR++ A+
Sbjct: 779 PDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAF 838

Query: 352 KVFEDMKMKEVFT-WNAMIGGLAMH 375
           +  + M  +     W +++G   +H
Sbjct: 839 EFIKKMPFEPTAAIWGSLLGACRVH 863



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 120/278 (43%), Gaps = 26/278 (9%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H +Q H+ +L++       +  +L+  +  S+  +   + ++F+S+ +  V  WN++L  
Sbjct: 697 HGRQVHSHVLRAKLPFYVVLQNSLIDMY--SKCGSLTYSRRIFDSMPERTVISWNAMLVG 754

Query: 108 CLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVV--KNGL 164
             +H      + L+  M   +  KP+  T+  V   CS    +  G+++   +V  K+G 
Sbjct: 755 YSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGF 814

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDG-----YLKCGDIEGA 218
             ++      + ++   G V +A + +     +     W +L+        +  G+    
Sbjct: 815 EPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVAR 874

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI-----TW----SAIID 269
           + L    + +N G+Y  + + +A  GR+++ R +   M +K  I     +W      +  
Sbjct: 875 RLL--EIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHT 932

Query: 270 GYTKDGYYKEALEVFNEMQR--DKIKPRKFV--LSCVL 303
            +  D  +    EVF +++    KIK   +V  LSCVL
Sbjct: 933 FHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVL 970


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/625 (35%), Positives = 341/625 (54%), Gaps = 77/625 (12%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S +  KQ HA ILK G F D +    LV   A SR+ + E A  +F  + +P  F +N++
Sbjct: 42  SMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTM 101

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +R  +        + LY EM+    +P+ FTYP V KACS+  A KEGVQ+HAHV K   
Sbjct: 102 IRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFK--- 158

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                                        G + DV   N LI+ Y KC            
Sbjct: 159 ----------------------------AGLEGDVFVQNGLINMYGKC------------ 178

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                              G  E A  +F +M++K   +WS+II  +     + E L + 
Sbjct: 179 -------------------GAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLL 219

Query: 285 NEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
            +M  + + +  + +L   L+AC  LG+ + G  IH  + RN   ++  + T+L+DMY K
Sbjct: 220 GDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVK 279

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
            G L+    VF++M  K  +++  +I GLA+HGR  +A+ +F  M  E + PD + +  V
Sbjct: 280 SGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGV 339

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LSAC+HAG+++ GLQ    +Q  + I P ++HYGC+VDL+GRAG L  A ++I SMP++P
Sbjct: 340 LSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKP 399

Query: 464 NAAVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRK 509
           N  VW +LL AC+ H  +E GE   +              +L  M  + ++  DVA++R 
Sbjct: 400 NDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRT 459

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
            M E+ +   PG S+++ N  +++F + D S PQ + IY M++++  +LK EGY+P+ SQ
Sbjct: 460 EMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQ 519

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL D+DE+EK    K+HS+KLAIAF  I T  G+ IR+ +N+R+C DCH+ TK IS +++
Sbjct: 520 VLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYE 579

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+I VRDR R+HHF++G CSC D+W
Sbjct: 580 REITVRDRNRFHHFKDGTCSCKDYW 604



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA--KCGRLDMAWKVFEDMKM 359
           +L  C S+    Q   +H H+ +  +  D+  G+ LV   A  + G ++ A  +F  ++ 
Sbjct: 36  LLKRCKSMEEFKQ---VHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
              F +N MI G       ++A+ L+ +M    + PD  T+  VL AC+  G +  G+Q 
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQI 152

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             ++ +  G++ +V     ++++ G+ G +  A  V   M  E + A W +++GA   H 
Sbjct: 153 HAHVFKA-GLEGDVFVQNGLINMYGKCGAIEHASVVFEQMD-EKSVASWSSIIGA---HA 207

Query: 480 EVEFGERLGKILLEMEPQNR 499
            VE       +L +M  + R
Sbjct: 208 SVEMWHECLMLLGDMSGEGR 227


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/633 (36%), Positives = 345/633 (54%), Gaps = 54/633 (8%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L   C T+ +   + HA +++ G   D  V+  L + +A S     + +L +      P 
Sbjct: 30  LLAACSTA-RRASELHAAVVRKGLDSDRAVAFRLQRAYAAS--GRLDHSLTLLGRTKDPT 86

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
              + S + A          ++L S+M+     P   T      AC        G  +HA
Sbjct: 87  TIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC---RGLSLGRALHA 143

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           +  K  L GD +V +                               AL+  Y + GD   
Sbjct: 144 YAFKLALSGDSYVAT-------------------------------ALLSMYARAGDAAA 172

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A+ LF    D +  S  AM++ +A  G  ++AR+LF+ +  KD I W+A+IDGYT+ G  
Sbjct: 173 ARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKP 232

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV--DAVLGT 335
            EAL++F  M R   +P +  +  VL+A A LG ++ G W+H +VK NS CV  +  + T
Sbjct: 233 NEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVK-NSRCVQLNVRVAT 291

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           ALVDMY KCG L+ A  VF  +  K++  WNAMI G AMHG +  A+E+F +++ + + P
Sbjct: 292 ALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWP 351

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
             ITF  +L+AC+H+G+++ G      M+  YGIDP++EHYGC+VDLLGRAG + EA  +
Sbjct: 352 TDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHL 411

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           + S+ + P+A +W +LL ACR H  +  G+R+   L+     N               + 
Sbjct: 412 VQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKW 471

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++VA++R +MK  GI+  PG S I+++  ++EF  GD SHP   EIY ML K+   +K  
Sbjct: 472 EEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEH 531

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           G+ P +  VL D+DE  KE A   HSEKLA+AFG I++ PG+TI+++KNLR C DCH+  
Sbjct: 532 GHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVL 591

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLISK+  R I+ RDR R+HHF +G C+C D+W
Sbjct: 592 KLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 358/666 (53%), Gaps = 95/666 (14%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV-KC 74
           P +I  T+ PT+ ++   +L  LN +C    Q LKQ HA+ L+S    +H  +  L  + 
Sbjct: 10  PPQI-VTSKPTNHYN--LLLQHLN-ECKDMSQ-LKQIHALSLRST-LPNHSTTLFLYSRI 63

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE---PWRVISLYSEMVGVDSK- 130
              S   +   A +VF+ V  PN F+WN ++RAC +          I LY+ M+   S  
Sbjct: 64  LHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPF 123

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+  T+P V KAC+   A  EG Q HAH++K G   DV++                    
Sbjct: 124 PDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYIN------------------- 164

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                       N+LI  Y  CG +E AK +F     ++  S+NAMI  F  FG FE A 
Sbjct: 165 ------------NSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETAL 212

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +                               +F + Q+   +P  + +  V+ ACA L 
Sbjct: 213 Q-------------------------------LFVQFQQQFFEPDGYTIQSVINACAGLC 241

Query: 311 ALDQGIWIHDHVKRN---SICVDAVL-GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           AL  G+W H  + RN   S+  D VL   +L+DMY KCG LD+A ++FE M+  +V +WN
Sbjct: 242 ALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWN 301

Query: 367 AMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           +MI G AMHG+ + A+E F +M R  +  P+ ITF  VLSAC H  M++ G +    M  
Sbjct: 302 SMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVN 361

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHGEVEFG 484
            Y I+P++EHYGC+VD+L RAG + EA E+++SMPM+P+  +W +LL + C+K+  VE  
Sbjct: 362 EYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELS 421

Query: 485 ERLGKILLEMEPQN---------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           E + + +LE E  +                R +DV  +RKLM   GI   PG S+I+V+G
Sbjct: 422 ENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDG 481

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV-LFDIDEEEKETAPKYHSE 588
           V HEF  GD SHPQ KEIY +L  + E++   GY P+ SQ  + D     K  + + HSE
Sbjct: 482 VTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSE 541

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LAIA G +N  PG  IR+ KNLRVC+DCH  T LIS++F  +IIVRDRVR+HHF++G C
Sbjct: 542 RLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSC 601

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 602 SCMDYW 607


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 320/578 (55%), Gaps = 54/578 (9%)

Query: 131 PNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           P+  T+P   K+ S +    + G Q+HA  +K     + HV +S + +YA  G +++A++
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----------------------TKD 227
           + D+      + W ALI  Y+  GD+  A  + ++                        D
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 228 KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
             TG                    A +  + + G   +AR++F++M DKD + W A++ G
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGG 247

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y  +G+ +EAL++F  MQ + ++P  + ++  L+AC  LGALD G      V  +    +
Sbjct: 248 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            VLGTAL+DMYAKCG    AW VF+ M+ K++  WNAMI GL M G    A  L  +M++
Sbjct: 308 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 367

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             ++ +  TF  +L +C H G+I  G +    M ++Y I P +EHYGCIVDLL RAG L 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 427

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA ++I  MPM  NA +  ALLG C+ H   E  E +   L+ +EP N            
Sbjct: 428 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 487

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R +D AK+R  MKE+G++  P  S ++  G +HEFR GD SHP   +IY  L ++  
Sbjct: 488 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 547

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GY P +  V+FD+++EEKE    +HSEKLAIAF  + T PG TIRV KNLRVC D
Sbjct: 548 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSD 607

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+A KLIS++  R+IIVRD  R+H FR+G CSCND+W
Sbjct: 608 CHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 43/382 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA  LK     + +V  +L+  +A  R      A +VF+ +  P+   W +++ A +
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLTLYA--RCGLLHRAQRVFDEMPHPSTVSWTALITAYM 148

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    + +         +P+ FT   V  AC+       G  V     + G+   V 
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVF 208

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + +Y   G + KAR++ D     D + W A++ GY   G    A +LF + + + 
Sbjct: 209 VATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG 268

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N     A+I  +A+ G   EA 
Sbjct: 269 VRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAW 328

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F +M  KD I W+A+I G    G+ K A  +  +M++  +K        +L +C   G
Sbjct: 329 VVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTG 388

Query: 311 ALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            +  G  + H+  K   I         +VD+ ++ G L  A ++ +DM M        A+
Sbjct: 389 LIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGAL 448

Query: 369 IGGLAMHGRADDAIELFFKMQR 390
           +GG  +H  A+ A  +  ++ R
Sbjct: 449 LGGCKIHRNAELAEHVLTQLIR 470


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/673 (34%), Positives = 352/673 (52%), Gaps = 67/673 (9%)

Query: 44  TSWQHLKQA---HAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVF 99
           +S + LKQ    HA+IL++   +   + GT L+  +A  R  + ELA K F+ + K  + 
Sbjct: 69  SSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCR--DLELARKTFDEMGKKTLV 126

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDS---KPNKFTYPTVFKACSITEADKEGVQVH 156
            WN+++     + +    + +Y +MV       KP+  T+ +   ACS+     +G ++ 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIE 186

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           A  V +G   D  V+++ I MY+  G +  AR++ D     DVI WN +I GY K G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 217 GAKELFKST---------------------------------KDKNTGSYNAMISGFARF 243
            A ELF+                                   K K  G  + ++ G    
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLL 306

Query: 244 GRF-------EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
             +       EEAR++F  +  +D ITW+ +I  Y + G  K+AL++F +MQ + + P +
Sbjct: 307 NMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
             LS VL+ACA LGA  QG  +H  +       D VL  +L++MY +CG LD    VF  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAA 426

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           ++ K + +W+ +I   A HG +   +E F+++ +E +  D +T    LSAC+H GM+  G
Sbjct: 427 IRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEG 486

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           +Q+   M   +G+ P+  H+ C+VDLL RAG L  AE +I  MP  P+A  W +LL  C+
Sbjct: 487 VQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCK 546

Query: 477 KHGEVEFGERLGKILLEMEPQNR---------------RCDDVAKMRKLMKERGIKTNPG 521
            H + +   R+   L E+E ++                R DDV K R     R  + NPG
Sbjct: 547 LHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPG 603

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S I++N  +HEF  GD SHP+ + I   +K++ +++K  GY P+   VL ++ EEEKE 
Sbjct: 604 CSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQ 663

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSEKLAIA+G I+T PG  + ++KNLR C DCH+A K IS++  R I+VRD  R+H
Sbjct: 664 MLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFH 723

Query: 642 HFRNGKCSCNDFW 654
           HF NG CSC D+W
Sbjct: 724 HFENGSCSCKDYW 736



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 237/502 (47%), Gaps = 60/502 (11%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL VF+++  PN   W  ++ A   +      +  Y  MV    +P+   +      CS 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 146 TEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           ++  K+G  +HA +++  L   D+ + ++ I MYA    +  AR+  D+  K  ++ WNA
Sbjct: 71  SKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKN----------------------------------- 229
           LI GY + GD  GA ++++    K+                                   
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTV 190

Query: 230 TGSY-------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
              Y       NA+I+ +++ G  E ARK+F+ + ++D I W+ +I GY K G   +ALE
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F  M  +  KP       +L AC +L  L+QG  IH  VK +    D V+G  L++MY 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYT 310

Query: 343 KC-GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           KC   L+ A +VFE ++ ++V TWN +I     +G+A DA+++F +MQ E + P+ IT +
Sbjct: 311 KCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSACA  G   +G +A+  +        +V     ++++  R G L +   V +++  
Sbjct: 371 NVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-R 428

Query: 462 EPNAAVWEALLGACRKHGEVEFG-ERLGKILLEMEPQNRRCDDVAKMRKL-------MKE 513
           + +   W  L+ A  +HG    G E   ++L E        DDV  +  L       M +
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQE----GLAADDVTMVSTLSACSHGGMLK 484

Query: 514 RGIKTNPGSSMIDVNGVIHEFR 535
            G+++    SM+  +G+  ++R
Sbjct: 485 EGVQSFL--SMVGDHGLAPDYR 504



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 134/259 (51%), Gaps = 14/259 (5%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G   +A  +F+ +   + ++W+ I+  + ++G+Y+EAL  +  M  + ++P   + 
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
              +  C+S   L QG  +H  +    +   D +LGTAL+ MYA+C  L++A K F++M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHAGMIDR 415
            K + TWNA+I G + +G    A++++  M     E M+PD ITF+  L AC+  G I +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 416 G--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           G  ++A T +   Y  D  V++   ++++  + G L  A +V   +    +   W  ++ 
Sbjct: 182 GREIEART-VASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 474 ACRKHG----EVEFGERLG 488
              K G     +E  +R+G
Sbjct: 238 GYAKQGAATQALELFQRMG 256



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 5/167 (2%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG +  A  VF  ++     +W  ++   A +G   +A+  + +M  E +RPD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 400 FACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           F   +  C+ +  + +G  L A+    Q+   D  +     ++ +  R   L  A +   
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFD--IILGTALITMYARCRDLELARKTFD 118

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            M  +     W AL+    ++G+     ++ + ++   P+  + D +
Sbjct: 119 EMG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAI 164


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/633 (36%), Positives = 356/633 (56%), Gaps = 82/633 (12%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGT--LVKCHANSRFSNFELALKVFNS 92
           + +L  KC  S + L+Q HA +L           G   ++   A S + + + A K+F+ 
Sbjct: 60  IALLIRKCR-SMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQ 118

Query: 93  VHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVD-SKPNKFTYPTVFKACSITEADK 150
           + +PN+F WNS++R C +   P +  + L+ +MV      PN FT   V KACSI  A +
Sbjct: 119 IQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALE 178

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG QVHA+V+K+G      V++                               AL++ Y 
Sbjct: 179 EGQQVHANVLKSGFGSSPFVET-------------------------------ALVNFYA 207

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           KC DI  A                                K+F+E+ D++ + WS +I G
Sbjct: 208 KCEDIVLAS-------------------------------KVFDEITDRNLVAWSTMISG 236

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y + G   EAL +F +MQ+  + P +  +  V++ACA+ GALD G W+H ++ +  I  D
Sbjct: 237 YARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETD 296

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             L TALV+MYAKCG ++ A +VF+ M +K+   W++MI GLA++G A+DA+E FF+M+ 
Sbjct: 297 LELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEE 356

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
            K++P+ +TF  VLSACAH+G++  G +  + M + +GI P +E YGC+VDLL RA  + 
Sbjct: 357 AKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVE 415

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------ 498
           +A  ++ +MP+ PN  +W  LL  C+K   ++  E + + LLE+EP N            
Sbjct: 416 DACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYA 475

Query: 499 --RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              + + ++++RK MK  GIK  PG S I+V+G++HEF  GD SHP+  E+  +L+ I +
Sbjct: 476 SMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISK 535

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++   G+ P  S VL ++ +EEKE A   HSE+LAIA+G + T     IR++KNLRVC D
Sbjct: 536 RVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGD 595

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           CH  TK+IS  ++R+IIVRDRVR+H F NG CS
Sbjct: 596 CHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/660 (35%), Positives = 354/660 (53%), Gaps = 59/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H+ ++K+G   D  V G L+  + N   S+ + A ++F +    NV +WN +L A  
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNC--SDIKTAHEMFLTAQTENVVLWNVMLVAFG 391

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + +       ++ +M      PN+FTYP++ + C+   A   G Q+H  V+K G   +V+
Sbjct: 392 KLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVY 451

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V S  I MYA  G ++ A  IL   ++ DV+ W ALI GY +      A + FK   ++ 
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRG 511

Query: 229 ----NTG-----------------------SY-----------NAMISGFARFGRFEEAR 250
               N G                       SY           NA++S +AR GR +EA 
Sbjct: 512 IQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAY 571

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             F +++ KD I+W+ +I G+ + GY ++AL+VF +M R K++   F     ++A A++ 
Sbjct: 572 LEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIA 631

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            + QG  IH  + +     D  +  AL+  YAKCG ++ A + F +M  K   +WNAMI 
Sbjct: 632 NIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMIT 691

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G + HG  ++A+ LF KM++    P+ +TF  VLSAC+H G++ +GL     M + +G+ 
Sbjct: 692 GYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLV 751

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P+  HY C+VDL+ RAG+L+ A + I  MP+EP+A +W  LL AC  H  VE GE   + 
Sbjct: 752 PKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQH 811

Query: 491 LLEMEPQNRR----------------CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           LLE+EP++                  C D  + R++M+ RG+K  PG S I+V   +H F
Sbjct: 812 LLELEPEDSATYVLLSNMYAVSGKWDCRD--QTRQMMRNRGVKKEPGRSWIEVKNSVHAF 869

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HP   +IY  L ++ +K    GY  +   +L D+++E+K+     HSEKLAI F
Sbjct: 870 YVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITF 929

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G ++      I V+KNLRVC+DCHS  K +SK+  R IIVRD  R+HHF  G CSC D+W
Sbjct: 930 GLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 148/623 (23%), Positives = 272/623 (43%), Gaps = 74/623 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  ILK G   +  +   LV  +      + +  +KVF  +   +V  W+ ++   +
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYF--ALGDLDGVVKVFEDMPNRSVRSWDKIISGFM 87

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV----QVHAHVVKNGLC 165
           E     RV+ L+S M+  +  P + ++ +V +ACS     + G+    Q+HA ++ +GL 
Sbjct: 88  EKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS---GHRIGIRYAEQIHARIICHGLL 144

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--- 222
               + +  I +YA  G +  AR++ D+    D + W A+I G+ + G  E A  LF   
Sbjct: 145 CSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM 204

Query: 223 ------------------------------------KSTKDKNTGSYNAMISGFARFGRF 246
                                               K      T   NA+++ ++R   F
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             A K+F++M  KDE++++++I G  + G+   ALE+F +M+RD +KP    ++ +L+AC
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           AS GAL +G  +H +V +  I  D ++  AL+D+Y  C  +  A ++F   + + V  WN
Sbjct: 325 ASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWN 384

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            M+          ++  +F +MQ + + P++ T+  +L  C   G +D G Q  T + + 
Sbjct: 385 VMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT 444

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            G    V     ++D+  + G L  A  ++ ++  E +   W AL+    +H    F E 
Sbjct: 445 -GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQHN--LFAEA 500

Query: 487 LGKILLEMEPQNRRCDDVAKMRKLMKERGIKT-NPGSSM---IDVNGVIHEFRTGDGSHP 542
           L K   EM  +  + D++     +    GI+  N G  +     V+G   +   G+    
Sbjct: 501 L-KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVS 559

Query: 543 ------QVKEIYLMLKKI-----------IEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
                 ++KE YL  +KI           I      GY  ++ +V   ++  + E +   
Sbjct: 560 LYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFT 619

Query: 586 HSEKLAIAFGFINTDPGATIRVI 608
               ++ A    N   G  I  +
Sbjct: 620 FGSAVSAAANIANIKQGKQIHAM 642



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 179/383 (46%), Gaps = 42/383 (10%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY  +   C  + +  E  ++H  ++K G   +  + +  + +Y   G ++   ++ +D 
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY--------------------- 233
               V  W+ +I G+++        +LF    ++N                         
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 234 -------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
                              N +I  +A+ G    ARK+F+ +  KD ++W A+I G++++
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           GY +EA+ +F EM    I P  +V S VL+ C  +   D G  +H  V +    ++  + 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            ALV +Y++      A KVF  M+ K+  ++N++I GLA  G +D A+ELF KM+R+ ++
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD +T A +LSACA  G + +G Q  +Y+ +  GI  ++   G ++DL      +  A E
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTAHE 370

Query: 455 VISSMPMEPNAAVWEALLGACRK 477
           +  +   E N  +W  +L A  K
Sbjct: 371 MFLTAQTE-NVVLWNVMLVAFGK 392



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 1/181 (0%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L  C + G+L +   +H  + +     ++VL   LVD+Y   G LD   KVFEDM  + 
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           V +W+ +I G      ++  ++LF  M  E + P  I+FA VL AC+   +  R  + + 
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
                +G+         ++ L  + G +  A +V  ++  + + + W A++    ++G  
Sbjct: 136 ARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS-WVAMISGFSQNGYE 194

Query: 482 E 482
           E
Sbjct: 195 E 195


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/654 (33%), Positives = 354/654 (54%), Gaps = 54/654 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA + K G   D  +S   V  +  ++  + E   + F ++   N+   N++L    +  
Sbjct: 113 HACVCKYGFESDILISNAFVTMYMKTQ--SVENGWQFFKAMMIENLASRNNLLSGFCDTE 170

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
              +   +  +++    +PN +T+ ++ K C+      EG  +H  V+K+G+  D H+ +
Sbjct: 171 TCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWN 230

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------------- 213
           S + +YA  G  N A ++  +  + DV+ W ALI G++  G                   
Sbjct: 231 SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPN 290

Query: 214 ---------------DIEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
                          D++  K+    + K++ D N     A++  +A+    E+A  +FN
Sbjct: 291 MYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN 350

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            +  +D   W+ I+ GY +DG  ++A++ F +MQR+ +KP +F L+  L+ C+ +  LD 
Sbjct: 351 RLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 410

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    +     D  + +ALVDMYAKCG ++ A  VF+ +  ++  +WN +I G + 
Sbjct: 411 GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 470

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG+   A++ F  M  E   PD +TF  VLSAC+H G+I+ G +    + ++YGI P +E
Sbjct: 471 HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 530

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VD+LGRAG   E E  I  M +  N  +WE +LGAC+ HG +EFGER    L E+
Sbjct: 531 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 590

Query: 495 EPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP+                  DDV  +R LM  RG+K  PG S ++VNG +H F + DGS
Sbjct: 591 EPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGS 650

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP+++EI+L L+ + +KL   GY+PN+  VL ++ + EK+    YHSE+LA+AF  ++T 
Sbjct: 651 HPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTS 710

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              TIR+ KNLR+C DCH   K IS++  ++++VRD   +HHF+NG CSC +FW
Sbjct: 711 TRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/504 (21%), Positives = 202/504 (40%), Gaps = 110/504 (21%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LK+    ++K+G   D ++  +LV  +   +  + + A +V   +   +V  WN  L + 
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYV--KCESLQCARQVLEEMPIQDVQQWNQKLSSA 65

Query: 109 LEHNEPW---RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              N P+     + L+  M     + N+F + ++  A +    +  G  +HA V K G  
Sbjct: 66  ---NSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF- 121

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                         +SD++  NA +  Y+K   +E   + FK+ 
Sbjct: 122 ------------------------------ESDILISNAFVTMYMKTQSVENGWQFFKAM 151

Query: 226 KDKNTGSYNAMISGF-----------------------------------ARFGRFEEAR 250
             +N  S N ++SGF                                   A  G   E +
Sbjct: 152 MIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGK 211

Query: 251 KLFNEM----NDKDEITWSAIIDGYTKDGY------------------------------ 276
            +  ++     + D   W+++++ Y K G                               
Sbjct: 212 AIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 271

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           Y   L +FN+M  +   P  +    +L +C+SL  +D G  +H  + +NS+  +  +GTA
Sbjct: 272 YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMYAK   L+ A  +F  +  +++F W  ++ G A  G+ + A++ F +MQRE ++P+
Sbjct: 332 LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPN 391

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             T A  LS C+    +D G Q L  M    G   ++     +VD+  + G + +AE V 
Sbjct: 392 EFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 450

Query: 457 SSMPMEPNAAVWEALLGACRKHGE 480
             + +  +   W  ++    +HG+
Sbjct: 451 DGL-VSRDTVSWNTIICGYSQHGQ 473



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           V +N IC D+ L ++LV++Y KC  L  A +V E+M +++V  WN  +          +A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           ++LF+ M+  ++R ++  FA ++SA A  G    G +++      YG + ++      V 
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG-ESIHACVCKYGFESDILISNAFVT 133

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +  +   +    +   +M +E  A+    L G C    + E  ++  +IL+++
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFC----DTETCDQGPRILIQL 182


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/481 (44%), Positives = 301/481 (62%), Gaps = 21/481 (4%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK--NTGSYNAMISGFARFGRFEEARK 251
           G+ +  +  N L+  Y   G +  A+ +F ++     +  S+N M+SG+ + G  E AR+
Sbjct: 111 GALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAARE 170

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F  M ++  ++WSA+ID   + G + EAL VF++M  +  KP   VL  VL  CA LGA
Sbjct: 171 VFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGA 230

Query: 312 LDQGIWIHDHVKRNSICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L++G W+H  +K   +     + +L TALVDMY KCG ++ AW VF+ ++  +V  WNAM
Sbjct: 231 LERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAM 290

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLAM+G    A+ELF +M  +   P+  TF   L AC H G +D G      M+  +G
Sbjct: 291 IGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRD-HG 349

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P  EHYGC+ DLLGRAG L EAE V+  MPMEP+A+ W AL+ +C  H  V  GER+G
Sbjct: 350 IEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVG 409

Query: 489 KILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K L+E+EP               N   +D   +RK+M+ERG K   G S I+ NG++HEF
Sbjct: 410 KKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEF 469

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID-EEEKETAPKYHSEKLAIA 593
           R+GD  HPQ + IY +L+ + ++L++ GY  ++SQVL D+D EE+K     YHSE+LA+A
Sbjct: 470 RSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALA 529

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG +N      IR++KNLRVC DCH   KL+SK+++R+IIVRDR R+H FR+G CSCNDF
Sbjct: 530 FGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDF 589

Query: 654 W 654
           W
Sbjct: 590 W 590



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            + E A +VF  + +  +  W++++ AC+   E    + ++ +M G   KP+     +V 
Sbjct: 163 GDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVL 222

Query: 141 KACSITEADKEGVQVHAHVVK---NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           K C+   A + G  VH  +      G  G+V ++++ + MY   GC+N+A  + D     
Sbjct: 223 KTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH 282

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLF 253
           DV+ WNA+I G    G  + A ELF+   DK    N  ++   +      GR +E   +F
Sbjct: 283 DVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVF 342

Query: 254 NEMNDKD----EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             M D         +  + D   + G  +EA  V  +M    ++P       ++++C
Sbjct: 343 RSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDM---PMEPHASQWGALMSSC 396



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 28/200 (14%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           VF+ V   +V +WN+++     +    R + L+  M+     PN+ T+     AC  T  
Sbjct: 275 VFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGR 334

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQI-LDDGSKSDVI 200
             EG  V   +  +G+           + Y C        G + +A  + LD   +    
Sbjct: 335 VDEGEDVFRSMRDHGI-------EPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHAS 387

Query: 201 CWNALIDGYLKCGDI----EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA---RKLF 253
            W AL+   L   ++       K+L +   D + G Y A+ + +A  G +E+A   RK+ 
Sbjct: 388 QWGALMSSCLMHNNVGVGERVGKKLIELEPD-DGGRYVALFNLYAVNGLWEDAKALRKMM 446

Query: 254 NEMNDKDE-----ITWSAII 268
            E   K E     I W+ ++
Sbjct: 447 EERGAKKETGLSFIEWNGLV 466


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 363/663 (54%), Gaps = 60/663 (9%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +HL Q H  ++ SG   + ++   LV  + +S       A K+F+    P+VF+WN+++R
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLV--NGSSNLGQICYARKLFDEFCYPDVFMWNAIIR 127

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ--VHAHVVKNGL 164
           +   +N     + +Y  M      P+ FT+P V KAC  TE    G+   +H  ++K G 
Sbjct: 128 SYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKAC--TELLDFGLSCIIHGQIIKYGF 185

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             DV V++  + +YA  G +  A+ + D      ++ W ++I GY + G    A  +F  
Sbjct: 186 GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 225 TKDKNTG-SYNAMIS------------------GF--------------------ARFGR 245
            ++      + A++S                  GF                    A+ G 
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGL 305

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
              A+  F++M   + I W+A+I GY K+G+ +EA+ +F+ M    IKP    +   + A
Sbjct: 306 VTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLA 365

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
            A +G+L+   W+ D+V +++   D  + T+L+DMYAKCG ++ A +VF+    K+V  W
Sbjct: 366 SAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMW 425

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           +AMI G  +HG+  +AI L+  M++  + P+ +TF  +L+AC H+G++  G +    M+ 
Sbjct: 426 SAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD 485

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            + I P  EHY C+VDLLGRAGYL EA   I  +P+EP  +VW ALL AC+ +  V  GE
Sbjct: 486 -FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGE 544

Query: 486 RLGKILLEMEPQN------------RRC--DDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
                L  ++P N              C  D VA +R LM+E+G+  + G S+I++NG +
Sbjct: 545 YAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKL 604

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
             F  GD SHP  KEI+  L+++  +LK  G+ P +  VL D++ EEKE    +HSE++A
Sbjct: 605 QAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIA 664

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +A+G I+T PG T+R+ KNLR C +CHSA KLISK+ +R+IIVRD  R+HHF++G CSC 
Sbjct: 665 VAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCG 724

Query: 652 DFW 654
           D+W
Sbjct: 725 DYW 727


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 324/568 (57%), Gaps = 41/568 (7%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+++   +          L   M  +  + +++TY +V  A S       G QVHA+V+
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           +  +    H   S          VN                 NALI  Y +CG +  A+ 
Sbjct: 302 RTVVQPSGHFVLS----------VN-----------------NALITLYTRCGKLVEARR 334

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           +F     K+  S+NA++SG     R EEA  +F EM  +  +TW+ +I G  ++G+ +E 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L++FN+M+ + ++P  +  +  +A+C+ LG+LD G  +H  + +        +G AL+ M
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITM 454

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y++CG ++ A  VF  M   +  +WNAMI  LA HG    AI+L+ KM +E + PDRITF
Sbjct: 455 YSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITF 514

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +LSAC+HAG++  G      M+  YGI PE +HY  ++DLL RAG  +EA+ V  SMP
Sbjct: 515 LTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP 574

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
            EP A +WEALL  C  HG +E G +    LLE+ PQ                + D+VA+
Sbjct: 575 FEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVAR 634

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +RKLM+ERG+K  PG S I+V  ++H F   D  HP+V  +Y  L++++ +++  GY P+
Sbjct: 635 VRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPD 694

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           +  VL D++ E+KE A   HSEKLA+ +G +    GATIRV KNLR+C DCH+A K ISK
Sbjct: 695 TKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISK 754

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V  R+IIVRDR R+HHFRNG+CSC+++W
Sbjct: 755 VVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 203/445 (45%), Gaps = 66/445 (14%)

Query: 76  ANSRFSNFELALKVFNSVHKP--NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           A S   N +LA ++FN+      +   +N+++ A    ++    + L+ +M  +   P+ 
Sbjct: 71  AYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDP 130

Query: 134 FTYPTVFKACSITEADKEG--VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           FT+ +V  A S+  AD+E    Q+H  V K    G + V S    + +C+          
Sbjct: 131 FTFSSVLGALSLI-ADEETHCQQLHCEVFK---WGALSVPSVLNALMSCY---------- 176

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARFGRFEEA 249
                  V C ++ +     C  +  A++LF       ++  ++  +I+G+ R      A
Sbjct: 177 -------VSCASSPLVN--SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAA 227

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+L   M D   + W+A+I GY   G+Y+EA ++   M    I+  ++  + V++A ++ 
Sbjct: 228 RELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNA 287

Query: 310 GALDQGIWIHDHVKRNSICVDA----VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           G  + G  +H +V R  +         +  AL+ +Y +CG+L  A +VF+ M +K++ +W
Sbjct: 288 GLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSW 347

Query: 366 NA-------------------------------MIGGLAMHGRADDAIELFFKMQREKMR 394
           NA                               MI GLA +G  ++ ++LF +M+ E + 
Sbjct: 348 NAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLE 407

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P    +A  +++C+  G +D G Q  + + Q+ G D  +     ++ +  R G +  A+ 
Sbjct: 408 PCDYAYAGAIASCSVLGSLDNGQQLHSQIIQL-GHDSSLSVGNALITMYSRCGLVEAADT 466

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V  +MP   ++  W A++ A  +HG
Sbjct: 467 VFLTMPYV-DSVSWNAMIAALAQHG 490



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 52/358 (14%)

Query: 50  KQAHAVILK-----SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           +Q HA +L+     SGHF    V+  L+  +  +R      A +VF+ +   ++  WN++
Sbjct: 294 RQVHAYVLRTVVQPSGHFVLS-VNNALITLY--TRCGKLVEARRVFDKMPVKDLVSWNAI 350

Query: 105 LRACL------EHNE-----------PWRV--------------ISLYSEMVGVDSKPNK 133
           L  C+      E N             W V              + L+++M     +P  
Sbjct: 351 LSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCD 410

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           + Y     +CS+  +   G Q+H+ +++ G    + V ++ I MY+  G V  A  +   
Sbjct: 411 YAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLT 470

Query: 194 GSKSDVICWNALIDGYLKCGD----IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
               D + WNA+I    + G     I+  +++ K     +  ++  ++S  +  G  +E 
Sbjct: 471 MPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEG 530

Query: 250 RKLFNEMN-----DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           R  F+ M        +E  +S +ID   + G + EA  V   M     +P   +   +LA
Sbjct: 531 RHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESM---PFEPGAPIWEALLA 587

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
            C   G ++ GI   D +       D     +L +MYA  G+ D   +V + M+ + V
Sbjct: 588 GCWIHGNMELGIQAADRLLELMPQQDGTY-ISLSNMYAALGQWDEVARVRKLMRERGV 644



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H+ I++ GH     V   L+  +  SR    E A  VF ++   +   WN+++ A  
Sbjct: 430 QQLHSQIIQLGHDSSLSVGNALITMY--SRCGLVEAADTVFLTMPYVDSVSWNAMIAALA 487

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV-VKNGLCGDV 168
           +H    + I LY +M+  D  P++ T+ T+  ACS     KEG      + V  G+  + 
Sbjct: 488 QHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEE 547

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIE---GAKELFKS 224
              S  I +    G  ++A+ + +    +     W AL+ G    G++E    A +    
Sbjct: 548 DHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLE 607

Query: 225 TKDKNTGSYNAMISGFARFGRFEE---ARKLFNEMNDKDE 261
              +  G+Y ++ + +A  G+++E    RKL  E   K E
Sbjct: 608 LMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKE 647


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 327/585 (55%), Gaps = 81/585 (13%)

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN--KFTYPT 138
           +N   A  +F  +  PN+F  N+ L+A  +++  +  I  ++  V   + PN  +FT+ +
Sbjct: 38  ANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTS 97

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+       G ++HA V K G                                +S+
Sbjct: 98  VLKACAGLAHVVNGQKIHAMVTKQGF-------------------------------ESN 126

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-- 256
           +   N+LID Y K G                                   AR LF+EM  
Sbjct: 127 LFVRNSLIDMYFKAG-------------------------------YLLLARHLFDEMFV 155

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQG 315
            D++ + W+A+I GY ++  Y +A+EVF  MQ+   + P    L  VL ACA LGALD G
Sbjct: 156 RDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLG 215

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
            WI   + R  + +   LG AL DMYAKCG +  A +VF  M+ ++V +W+ +I GLAM+
Sbjct: 216 KWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMY 275

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G AD+A   F++M     +P+ + F  +L+AC HAG++ +GL     M + YG+ P+VEH
Sbjct: 276 GHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEH 335

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           YGC+VDLL RAG L +AE++ISSMPM+PN  +W ALLG CR + +   G+R+ + +LE++
Sbjct: 336 YGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELD 395

Query: 496 PQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
             +               R DD AK R  M+E G+   PG S I+V+  +HEF  GD SH
Sbjct: 396 SDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSH 455

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
           P+  +IY M+++++ K+K+ GY P +  V+  IDEEEKE A   HSEKLAIAFG I+T  
Sbjct: 456 PESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSE 515

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           G TIRV+KNLR+C DCH A K+IS + KR+IIVRDR R+HHF++G
Sbjct: 516 GTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDG 560


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/660 (34%), Positives = 358/660 (54%), Gaps = 66/660 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H + LK G   D YV+ +L+  H   R+     A  +F+ +   ++  WN+++    +  
Sbjct: 173 HCLALKFGFMWDVYVAASLI--HLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++L   +  +DS     T  ++  AC+       GV +H++ +K+GL  ++ V +
Sbjct: 231 NAKEALTLSDGLRAMDS----VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------------------- 209
             I +YA FG +   +++ D     D+I WN++I  Y                       
Sbjct: 287 KLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQP 346

Query: 210 ------------LKCGDIEGAKELFKST-------KDKNTGSYNAMISGFARFGRFEEAR 250
                        + G+I   + +   T       +D   G  NA++  +A+ G  + AR
Sbjct: 347 DCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG--NAVVVMYAKLGLVDSAR 404

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD--KIKPRKFVLSCVLAACAS 308
            +FN + +KD I+W+ II GY ++G+  EA+E++N M+ +  +I   +     VL AC+ 
Sbjct: 405 AVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQ 464

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            GAL QG+ +H  + +N + +D  +GT+L DMY KCGRLD A  +F  +       WN +
Sbjct: 465 AGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTL 524

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I     HG  + A+ LF +M  E ++PD ITF  +LSAC+H+G++D G      MQ  YG
Sbjct: 525 IACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYG 584

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDL GRAG L  A   I SMP++P+A++W ALL ACR HG V+ G+   
Sbjct: 585 ITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIAS 644

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E+EP++               + + V ++R +   +G++  PG S ++V+  +  F
Sbjct: 645 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVF 704

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            TG+ +HP  +E+Y  L  + EKLKM GY P+   VL D++++EKE     HSE+LA+AF
Sbjct: 705 YTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAF 764

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I T    TIR+ KNLRVC DCHS TK ISK+ +R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 765 ALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 237/502 (47%), Gaps = 51/502 (10%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+ Q  K  HA ++ S   Q+  +S  LV  +      N  LA   F+ +H  +V+ WN 
Sbjct: 65  TNLQSAKCLHARLVVSNAIQNVCISAKLVNLYC--YLGNVALARYTFDHIHNRDVYAWNL 122

Query: 104 VLRACLEHNEPWRVISLYSE-MVGVDSKPNKFTYPTVFKAC-SITEADKEGVQVHAHVVK 161
           ++           VI  +S  M+    +P+  T+P+V KAC ++T+ +K    +H   +K
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNK----IHCLALK 178

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   DV+V +S I +Y  +G V  AR + D+    D+  WNA+I GY + G+ + A  L
Sbjct: 179 FGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 222 FKSTK------------------DKNTG----SY-------------NAMISGFARFGRF 246
               +                  D N G    SY             N +I  +A FG  
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++ +K+F+ M  +D I+W++II  Y  +     A+ +F EM+  +I+P    L  + +  
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 307 ASLGALDQGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           + LG +     +     R    + D  +G A+V MYAK G +D A  VF  +  K+V +W
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 366 NAMIGGLAMHGRADDAIELFFKMQRE--KMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           N +I G A +G A +AIE++  M+ E  ++  ++ T+  VL AC+ AG + +G++    +
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            +  G+  +V     + D+ G+ G L +A  +   +P   N+  W  L+ AC  HG    
Sbjct: 479 LK-NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLI-AC--HGFHGH 533

Query: 484 GERLGKILLEMEPQNRRCDDVA 505
           GE+   +  EM  +  + D + 
Sbjct: 534 GEKAVMLFKEMLDEGVKPDHIT 555



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 185/428 (43%), Gaps = 81/428 (18%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T+F+ C+  ++ K    +HA +V +    +V + +  + +Y   G V  AR   D     
Sbjct: 59  TLFRYCTNLQSAK---CLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 198 DVICWNALIDGYLKCG--------------------DIEGAKELFKSTKDKNTGS----- 232
           DV  WN +I GY + G                    D      + K+ ++   G+     
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCL 175

Query: 233 ------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                         ++I  + R+G    AR LF+EM  +D  +W+A+I GY + G  KEA
Sbjct: 176 ALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEA 235

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L + + ++          +  +L+AC   G  ++G+ IH +  ++ +  +  +   L+D+
Sbjct: 236 LTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YA+ G L    KVF+ M ++++ +WN++I    ++ +   AI LF +M+  +++PD +T 
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTL 351

Query: 401 ACVLSACAHAGMID--RGLQALTY-----------------MQQMYGI------------ 429
             + S  +  G I   R +Q  T                  M    G+            
Sbjct: 352 ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-----PNAAVWEALLGACRKHGEVEFG 484
           + +V  +  I+    + G+ +EA E+ + M  E      N   W ++L AC + G +  G
Sbjct: 412 NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG 471

Query: 485 ERL-GKIL 491
            +L G++L
Sbjct: 472 MKLHGRLL 479


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/659 (34%), Positives = 355/659 (53%), Gaps = 57/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  HA +   G   +   +  L   +A  R      A +VF+ +   +   WN+++    
Sbjct: 245 RAVHAQLAARGLSPEALAATALANMYAKCRRPGD--ARRVFDRMPARDRVAWNALVAGYA 302

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +      + +   M   D  +P+  T  +V  AC+  +A     +VHA  V+ G    V
Sbjct: 303 RNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQV 362

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-- 226
           +V ++ + +Y   G V+ AR++ D     + + WNA+I GY + GD   A  LFK     
Sbjct: 363 NVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGE 422

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                + N    NA+I+ + +  R + A
Sbjct: 423 GVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLA 482

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            ++F+E+  K  ++W+A+I G T++G  ++A+ +F+ MQ + +KP  F L  ++ A A +
Sbjct: 483 AQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADI 542

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
               Q  WIH +  R  +  D  + TAL+DMYAKCGR+ +A  +F   + + V TWNAMI
Sbjct: 543 SDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMI 602

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G   HG    A+ELF +M+     P+  TF  VLSAC+HAG++D G +  + M++ YG+
Sbjct: 603 HGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGL 662

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P +EHYG +VDLLGRAG L EA   I  MPMEP  +V+ A+LGAC+ H  VE  E   +
Sbjct: 663 EPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQ 722

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + E+EP+                   DVA++R  M+++G++  PG S++ +   IH F 
Sbjct: 723 RIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFY 782

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
           +G  +H Q K+IY  L K+IE++K  GY P++  +  D++++ K      HSEKLAIA+G
Sbjct: 783 SGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYG 841

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I T PG TI++ KNLRVC+DCH+ATKLIS V  R+II+RD  R+HHF++GKCSC D+W
Sbjct: 842 LIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 198/434 (45%), Gaps = 56/434 (12%)

Query: 105 LRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           LRA    ++    ++ ++ M     S P   T+ ++ K C+       G  VHA +   G
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           L  +    ++   MYA       AR++ D     D + WNAL+ GY + G  E A  +  
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 224 STKDKNTGSYNAM--------------------ISGFARFGRFEE--------------- 248
             ++++    +A+                    +  FA  G F+E               
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 249 -----ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
                ARK+F+ M D++ ++W+A+I GY ++G   EAL +F  M  + +      +   L
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC  LG LD+G  +H+ + R  +  +  +  AL+ MY KC R D+A +VF+++  K   
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL--- 420
           +WNAMI G   +G ++DA+ LF +MQ E ++PD  T   ++ A A    I   LQA    
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALAD---ISDPLQARWIH 552

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            Y  +++ +D +V     ++D+  + G ++ A  + +S   + +   W A++     HG 
Sbjct: 553 GYSIRLH-LDQDVYVLTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMIHGYGSHGS 610

Query: 481 VEFGERLGKILLEM 494
                  GK+ +E+
Sbjct: 611 -------GKVAVEL 617


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/662 (34%), Positives = 362/662 (54%), Gaps = 60/662 (9%)

Query: 51  QAHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q HA  L+ G  +   + SG+LV  HA  RF     A KVF+ + + +V  WN++L    
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLV--HAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLC 145

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      + L+  MVG     +  T  +V   C +       + +H + VK+GL  ++ 
Sbjct: 146 RNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELF 205

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I +Y   G + +A+ +       D++ WN++I G  + G    A ++F+  +   
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSG 265

Query: 230 TG----------------------------------------SYNAMISGFARFGRFEEA 249
                                                     + NA++  +A+    E A
Sbjct: 266 VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAA 325

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
           +++F+ M  +D ++W+ +I GY ++G   EA+E +  MQ+ + +K  +     VL A + 
Sbjct: 326 QRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSH 385

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL QG+ +H    +  + VD  +GT L+D+YAKCG+L  A  +FE M  +    WNA+
Sbjct: 386 LGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAI 445

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GL +HG   +A+ LF +MQ+E ++PD +TF  +L+AC+HAG++D+G      MQ  Y 
Sbjct: 446 ISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYD 505

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P  +HY C+ D+LGRAG L EA   I +MP++P++AVW ALLGACR HG VE G+   
Sbjct: 506 IVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVAS 565

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E++P+N               + D V ++R L++ + ++  PG S I+V   ++ F
Sbjct: 566 QNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 625

Query: 535 RTGDGS--HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            +G+ +  HPQ +EI   L+ ++ K++  GY  + S VL D++++EKE     HSE+LAI
Sbjct: 626 YSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAI 685

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG INT     + + KNLRVC DCH+ATK IS++ +R+IIVRD  R+HHF++G CSC D
Sbjct: 686 AFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGD 745

Query: 653 FW 654
           FW
Sbjct: 746 FW 747


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/590 (36%), Positives = 336/590 (56%), Gaps = 41/590 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    + A +  + + +  V  WN+++   + H      + ++ +M  +  + ++FTY +
Sbjct: 237 RNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTS 296

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+       G QVHA++++                        + R  LD     +
Sbjct: 297 VLSACANAGFFLHGKQVHAYILRT-----------------------EPRPSLDFSLSVN 333

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
               NAL   Y KCG ++ A+++F     K+  S+NA++SG+   GR +EA+  F EM +
Sbjct: 334 ----NALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           ++ +TW+ +I G  ++G+ +E+L++FN M+ +  +P  +  +  + ACA L AL  G  +
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQL 449

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  + R         G AL+ MYAKCG ++ A  +F  M   +  +WNAMI  L  HG  
Sbjct: 450 HAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHG 509

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
             A+ELF  M +E + PDRITF  VLS C+HAG+++ G +    M  +YGI P  +HY  
Sbjct: 510 AQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYAR 569

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLL RAG  +EA+++I +MP+EP   +WEALL  CR HG ++ G +  + L E+ PQ+
Sbjct: 570 MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH 629

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R DDVAK+RKLM+++G+K  PG S I+V   +H F   D  HP+V
Sbjct: 630 DGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEV 689

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           + +Y  L+++  K++  GY P++  VL D++ E+KE     HSEKLA+ FG +    GAT
Sbjct: 690 QAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGAT 749

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +RV KNLR+C DCH+A K +SKV +R+I+VRD  R+HHF+NG+CSC ++W
Sbjct: 750 VRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 213/469 (45%), Gaps = 78/469 (16%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           TL+  H+++  SN    +     +   +   +N+++     +N+ +  I L+ +++    
Sbjct: 86  TLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGF 145

Query: 130 KPNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           +P+ FT+ +V  A + I E +K+  Q+H  VVK+G                         
Sbjct: 146 RPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG------------------------- 180

Query: 189 QILDDGSKSDVICWNALIDGYLKCGD---------IEGAKELFKSTKDKNTGSYNAMISG 239
                G  + V+  NAL+  ++KC           +  A++LF    +++  S+  MI+G
Sbjct: 181 ----SGFVTSVL--NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAG 234

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G  + AR+  + M +K  + W+A+I GY   G++ EALE+F +M    I+  +F  
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTY 294

Query: 300 SCVLAACASLGALDQGIWIHDHVKRN----SICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           + VL+ACA+ G    G  +H ++ R     S+     +  AL  +Y KCG++D A +VF 
Sbjct: 295 TSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFN 354

Query: 356 DMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIEL 384
            M +K++ +WNA                               MI GLA +G  +++++L
Sbjct: 355 QMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKL 414

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E   P    FA  + ACA    +  G Q    + ++ G D  +     ++ +  
Sbjct: 415 FNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYA 473

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           + G +  A  +  +MP   ++  W A++ A  +HG       L +++L+
Sbjct: 474 KCGVVEAAHCLFLTMPY-LDSVSWNAMIAALGQHGHGAQALELFELMLK 521



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 155/355 (43%), Gaps = 40/355 (11%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VHAH++ +G     ++ +  I +Y     +  A  + D+  + D++    LI  +   G+
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96

Query: 215 IEGAKELFKSTK--DKNTGSYNAMISGFAR----FGRFEEARKLFNEMNDKDEITWSAII 268
              A+E+F +T    ++T  YNAMI+G++     FG  E  R L       D  T+++++
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156

Query: 269 DGYTKDGYYKEALEVFNEMQRDKI-----KPRKFVLSCVLAACASL-------------G 310
                      AL V +E Q  +I     K     ++ VL A  S+              
Sbjct: 157 GAL--------ALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSS 208

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +     + D +       D +  T ++  Y + G LD A +  + M  K V  WNAMI 
Sbjct: 209 LMAAARKLFDEMTER----DELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMIS 264

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM---QQMY 427
           G   HG   +A+E+F KM    ++ D  T+  VLSACA+AG    G Q   Y+   +   
Sbjct: 265 GYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRP 324

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            +D  +     +  L  + G + EA +V + MP++ +   W A+L      G ++
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGYVNAGRID 378


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 354/660 (53%), Gaps = 98/660 (14%)

Query: 27  SEFSQKTIL---------DILNTKCHTSWQHLKQAHAVILKSG------HFQDHYVSGTL 71
           S FS+ ++L         ++L T   +S   L+Q HA  ++ G          H +   L
Sbjct: 2   SPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIF-YL 60

Query: 72  VKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDS 129
           V   +    S    A KVF+ + KP NVF+WN+++R   E        SLY EM V    
Sbjct: 61  VSLPSPPPMS---YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV 117

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P+  TYP + KA +     + G  +H+ V+++G                 FG       
Sbjct: 118 EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG-----------------FG------- 153

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                  S +   N+L+  Y  CGD+  A                               
Sbjct: 154 -------SLIYVQNSLLHLYANCGDVASA------------------------------- 175

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            K+F++M +KD + W+++I+G+ ++G  +EAL ++ EM    IKP  F +  +L+ACA +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G  +H ++ +  +  +      L+D+YA+CGR++ A  +F++M  K   +W ++I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 370 GGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            GLA++G   +AIELF  M+  E + P  ITF  +L AC+H GM+  G +    M++ Y 
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P +EH+GC+VDLL RAG + +A E I SMPM+PN  +W  LLGAC  HG+ +  E   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             +L++EP +              +R  DV K+RK M   G+K  PG S+++V   +HEF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHPQ   IY  LK++  +L+ EGY P  S V  D++EEEKE A  YHSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+T   + I V+KNLRVC DCH A KL+SKV+ R+I+VRDR R+HHF+NG CSC D+W
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 351/673 (52%), Gaps = 67/673 (9%)

Query: 44  TSWQHLKQA---HAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVF 99
           +S + LKQ    HA+IL++   +   + GT L+  +A  R  + ELA K F+ + K  + 
Sbjct: 69  SSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCR--DLELARKTFDEMGKKTLV 126

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDS---KPNKFTYPTVFKACSITEADKEGVQVH 156
            WN+++     + +    + +Y +MV       KP+  T+ +   AC++     +G ++ 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIE 186

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
           A  V +G   D  V+++ I MY+  G +  AR++ D     DVI WN +I GY K G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 217 GAKELFKST---------------------------------KDKNTGSYNAMISGFARF 243
            A ELF+                                   K +  G  + ++ G    
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLL 306

Query: 244 GRF-------EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
             +       EEAR++F  M  +D ITW+ +I  Y + G  K+AL++F +MQ + + P +
Sbjct: 307 NMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
             LS VL+ACA LGA  QG  +H  +       D VL  +L++MY +CG LD    VF  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAA 426

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           ++ K + +W+ +I   A HG +   +E F+++ +E +  D +T    LSAC+H GM+  G
Sbjct: 427 IRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEG 486

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           +Q    M   +G+ P+  H+ C+VDLL RAG L  AE +I  MP  P+A  W +LL  C+
Sbjct: 487 VQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCK 546

Query: 477 KHGEVEFGERLGKILLEMEPQNR---------------RCDDVAKMRKLMKERGIKTNPG 521
            H + +   R+   L E+E ++                R DDV K R     R  + NPG
Sbjct: 547 LHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKNPG 603

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S I++N  +HEF  GD SHP+ + I   +K++ +++K  GY P+   VL ++ EEEKE 
Sbjct: 604 CSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQ 663

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSEKLAIA+G I+T PG  + ++KNLR C DCH+A K IS++  R I+VRD  R+H
Sbjct: 664 MLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFH 723

Query: 642 HFRNGKCSCNDFW 654
           HF NG CSC D+W
Sbjct: 724 HFENGSCSCKDYW 736



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 237/502 (47%), Gaps = 60/502 (11%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL VF+++  PN   W  ++ A   +      +  Y  MV    +P+   +      CS 
Sbjct: 11  ALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSS 70

Query: 146 TEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           ++  K+G  +HA +++  L   D+ + ++ I MYA    +  AR+  D+  K  ++ WNA
Sbjct: 71  SKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNA 130

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKN----------------------------------- 229
           LI GY + GD  GA ++++    K+                                   
Sbjct: 131 LIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTV 190

Query: 230 TGSY-------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
              Y       NA+I+ +++ G  E ARK+F+ + ++D I W+ +I GY K G   +ALE
Sbjct: 191 ASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALE 250

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F  M  +  KP       +L AC +L  L+QG  IH  V+ +    D V+G  L++MY 
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYT 310

Query: 343 KC-GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           KC   L+ A +VFE M+ ++V TWN +I     +G+A DA+++F +MQ E + P+ IT +
Sbjct: 311 KCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSACA  G   +G +A+  +        +V     ++++  R G L +   V +++  
Sbjct: 371 NVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-R 428

Query: 462 EPNAAVWEALLGACRKHGEVEFG-ERLGKILLEMEPQNRRCDDVAKMRKL-------MKE 513
           + +   W  L+ A  +HG    G E   ++L E        DDV  +  L       M +
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQE----GLAADDVTMVSTLSACSHGGMLK 484

Query: 514 RGIKTNPGSSMIDVNGVIHEFR 535
            G++T    SM+  +G+  ++R
Sbjct: 485 EGVQTFL--SMVGDHGLAPDYR 504



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 14/259 (5%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G   +A  +F+ +   + ++W+ I+  + ++G+Y+EAL  +  M  + ++P   + 
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
              +  C+S   L QG  +H  +    +   D +LGTAL+ MYA+C  L++A K F++M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHAGMIDR 415
            K + TWNA+I G + +G    A++++  M     E M+PD ITF+  L AC   G I +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 416 G--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           G  ++A T +   Y  D  V++   ++++  + G L  A +V   +    +   W  ++ 
Sbjct: 182 GREIEART-VASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMIS 237

Query: 474 ACRKHG----EVEFGERLG 488
              K G     +E  +R+G
Sbjct: 238 GYAKQGAATQALELFQRMG 256



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 1/165 (0%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG +  A  VF  ++     +W  ++   A +G   +A+  + +M  E +RPD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F   +  C+ +  + +G      + +   ++ ++     ++ +  R   L  A +    M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
             +     W AL+    ++G+     ++ + ++   P+  + D +
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAI 164


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/621 (35%), Positives = 350/621 (56%), Gaps = 55/621 (8%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITE 147
           VF+ + + N+F WN+++ A   +      +S++SE++ V + KP+ FT P V KAC+   
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA-RQILDDGSKSDVICWNALI 206
               G  +H    K  L  DV V ++ I MY   G V +A +++ D      V  WNAL+
Sbjct: 223 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282

Query: 207 DGYLKCGDIEGAKELFKSTKDK-------NTGS------------YNAMISGFAR----- 242
            GY +  D   A +L+    D          GS            Y   I GFA      
Sbjct: 283 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 342

Query: 243 ---------------FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                           G+   A+ LF+ M  +  ++W+ +I GY+++G   EA+ +F +M
Sbjct: 343 VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 402

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
             D I+P +  + CV  AC+ L AL  G  +H    +  +  D  + ++++DMYAK G +
Sbjct: 403 LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCI 462

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
            ++ ++F+ ++ K+V +WN +I G  +HGR  +A+ELF KM R  ++PD  TF  +L AC
Sbjct: 463 GLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMAC 522

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +HAG+++ GL+    M  ++ I+P++EHY C+VD+LGRAG + +A  +I  MP +P++ +
Sbjct: 523 SHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRI 582

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKE 513
           W +LL +CR HG +  GE++   LLE+EP+              + + DDV ++R  MK+
Sbjct: 583 WSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKD 642

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
            G++ + G S I+V G +H F  GD   P+++E+    +++  K+   GY+P++  VL D
Sbjct: 643 IGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHD 702

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           ++EE+K    + HSEKLAI+FG +NT  G  +RV KNLR+C DCH+A K ISKV  RDI+
Sbjct: 703 LEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIV 762

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRD  R+HHFR+G CSC D+W
Sbjct: 763 VRDNKRFHHFRDGICSCGDYW 783



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 130/246 (52%), Gaps = 16/246 (6%)

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKDKNTGSYNA-MISGFARFG 244
           +LD   +S+ +    L+    +  DIE  + L +    ST+  N    N  +I+ ++  G
Sbjct: 98  VLDSAQRSEAM--GVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCG 155

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVL 303
              ++R +F+++  K+   W+AI+  YT++  +++A+ +F+E+    + KP  F L CV+
Sbjct: 156 SPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVI 215

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK-VFEDMKMKEV 362
            ACA L  L  G  IH    +  +  D  +G AL+ MY KCG ++ A K VF+ M  K V
Sbjct: 216 KACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTV 275

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +WNA++ G A +     A++L+ +M    + PD  T   +L AC+        +++L Y
Sbjct: 276 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR-------MKSLHY 328

Query: 423 MQQMYG 428
            ++++G
Sbjct: 329 GEEIHG 334


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/681 (34%), Positives = 362/681 (53%), Gaps = 73/681 (10%)

Query: 41  KCHTSWQHLKQAHAVILKSGHF--QDHYVSGTLVKCHANSRFSNFELALKVFNS------ 92
           +C TS   LK  H+ +   G      H+++  ++     S+  +   A  +F+       
Sbjct: 33  QCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLII---LYSKLGDLHSARTLFDHRHHHHH 89

Query: 93  --VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
                PN F+ N++LRA       +  I LY  M  +    N FTYP V K C+      
Sbjct: 90  GHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI---- 206
            G  VH  VV+ G   D+ V+++ + MYA  G +  A ++ D     DV+CW A+I    
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 207 -----------------DGYL--------------KCGD------IEGAKELFKSTKDKN 229
                            +G+L              + GD      + G   L     D +
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVS 269

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
            G  N+++  +A+ G  E AR +F+ M +++ I+W++++ GYT++G   +AL +FN+MQ 
Sbjct: 270 VG--NSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQA 327

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
            +  P       +++AC+ LG+   G  +H+ V  + + +D  L  A++DMY KCG LD 
Sbjct: 328 SECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDT 387

Query: 350 AWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           A ++F + ++ E  V +WN +I G  +HG   +A+ELF +MQ E + P+ ITF  +LSAC
Sbjct: 388 AVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSAC 447

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +HAG+ID G +    M ++  + PE++HY C+VD+LGRAG+L EA  +I  +P  P+  V
Sbjct: 448 SHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV 506

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKE 513
           W ALL ACR HG  E GE     L ++EP+              + +  +V  +R+ MK 
Sbjct: 507 WGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKS 566

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           RG+K     S+I+    +H F T D S P  +E+Y  ++ +  ++KM GY P+ S VL D
Sbjct: 567 RGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHD 626

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           ++ E+KE    YHSEKLA+AFG +  D G  I+V KNLRVC DCH A K IS ++ R II
Sbjct: 627 VEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKII 686

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRD  R+HHF+ G+CSC D+W
Sbjct: 687 VRDGNRFHHFQGGRCSCGDYW 707


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 344/597 (57%), Gaps = 61/597 (10%)

Query: 86  ALKVFNSV---HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           A KVF+ +   HK  V  W +++   + HN     + ++ EM     KP++ T   +F  
Sbjct: 69  ARKVFDEIPHSHKDTV-DWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGG 127

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+       G Q H  +VK GL G                 V KA               
Sbjct: 128 CARLGDVVVGAQGHGCMVKMGLGG-----------------VEKA--------------C 156

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NA++D Y K G +  A+ +F   K ++  S+  ++ G  R       R +F+EM +++E+
Sbjct: 157 NAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEV 216

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC-VLAACASLGALDQGIWIHDH 321
            W+ +I GY   G  +E+  +  EM  D      +V  C +L AC+  G L  G W+H +
Sbjct: 217 AWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAY 276

Query: 322 -VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            +K     ++ ++GTA+VDMYAKCGR+ +A+K F+ M  + V +WNAM+ GLAMHG    
Sbjct: 277 ALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRA 336

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+++F +M +E  +PD +TF  VLSAC+H+G++D+G      ++ +YGI P+VEHY C+V
Sbjct: 337 ALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMV 395

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR- 499
           DLLGRAG L EAE ++  MP+ PN  V  +LLG+C  HG+++ GE L + L++++PQN  
Sbjct: 396 DLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTE 455

Query: 500 -------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                        + +    +R+++K+RGIK  PG S I V G +H+F  GD SHP+ +E
Sbjct: 456 YHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTRE 515

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFD---------IDEEEKETAPKYHSEKLAIAFGFI 597
           +Y ML ++I +L++ GY+PN++   F          +++EEKE A   HSEKLAI FG I
Sbjct: 516 VYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLI 575

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +T PG  + + KNLR+C+DCHSA K++SK++ R+I++RDR R+H F+ G CSC D+W
Sbjct: 576 STGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 12/201 (5%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSIC--VDAVLGTALVDMYAKCGRLDMAWKVFEDM-- 357
           +L +CA   +LD G  +H  +    I    +  L  AL+  YA CG    A KVF+++  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K+   W  ++G    H  +D+A+ +F +M+R  ++PD +T  C+   CA  G +  G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL-GACR 476
           Q    M +M G+    +    ++D+  ++G + EA  V   M  + +   W  +L G  R
Sbjct: 139 QGHGCMVKM-GLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQ-SVVSWTVILDGVIR 196

Query: 477 KHGEVEFGERLGKILLEMEPQ 497
                  G R G+++ +  P+
Sbjct: 197 SE-----GVRNGRVVFDEMPE 212


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/681 (35%), Positives = 366/681 (53%), Gaps = 61/681 (8%)

Query: 29  FSQKTILDILNTKCHTSWQHLK-QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           F   T+L +L +     W  L    HA + K G   D +V   L+ C++   ++  E A 
Sbjct: 146 FVFSTVLKLLVS---AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYA--ECAR 200

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
           +VF+++   ++  W  ++ AC   NE +   + L+S M  V  KPN FT+ +V KAC   
Sbjct: 201 QVFDAIEYKDMVSWTGMV-ACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL 259

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
           E    G  VH    K     ++ V    I +Y   G V+ A Q+ ++  K DVI W+ +I
Sbjct: 260 EVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMI 319

Query: 207 DGYLKCGDIEGAKELF---------------------------------------KSTKD 227
             Y +    E A E+F                                       K   D
Sbjct: 320 ARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLD 379

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            N    NA++  +A+ GR E + +LF+E  +  +++W+ +I GY + G  ++AL +F +M
Sbjct: 380 MNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM 439

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
              +++  +   S VL ACA + AL+ G  IH    +     + V+G AL+DMYAKCG +
Sbjct: 440 LECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNI 499

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A  VF+ ++  +  +WNAMI G ++HG   +A++ F  M   + +PD++TF  +LSAC
Sbjct: 500 KDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSAC 559

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           ++AG++DRG      M + Y I+P  EHY C+V LLGR+G+L +A +++  +P EP+  V
Sbjct: 560 SNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMV 619

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKE 513
           W ALL AC  H +VE G    + +LE+EP++              RR  +VA +R  MK 
Sbjct: 620 WRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKR 679

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           +GI+  PG S I+  G +H F  GD SHP  K I  ML+ +  K + EGY P+ S VL D
Sbjct: 680 KGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLD 739

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           +++ +KE     HSE+LA+A+G I T   + +R+IKNLR+C DCH+A KLISK+ +RDII
Sbjct: 740 VEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDII 799

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           +RD  R+HHF  G CSC D+W
Sbjct: 800 IRDMNRFHHFHEGICSCGDYW 820



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 228/504 (45%), Gaps = 59/504 (11%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96
           I N  C T     K  H  I+K G+  D + +  L+  +   ++ +   A K+F+ +   
Sbjct: 55  IRNGDCATG----KYLHCEIIKKGNCLDLFANNILLNFYV--KYDSLPDAAKLFDEMPDR 108

Query: 97  NVFVWNSVLRA---CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
           N   + ++++    CL  +E    I L+S + G   + N F + TV K     E  K G 
Sbjct: 109 NTVSFVTLIQGYSQCLRFSEA---IGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGF 165

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            VHA V K G   D  V ++ I  Y+  G    ARQ+ D     D++ W  ++  Y++  
Sbjct: 166 SVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENE 225

Query: 214 DIEGAKELFKSTK----DKNTGSYNA---------------------------------- 235
             E + +LF   +      N  ++ +                                  
Sbjct: 226 CFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGV 285

Query: 236 -MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            +I  + + G  ++A ++F EM   D I WS +I  Y +    +EA+E+F  M+R  + P
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLP 345

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            +F L+ +L ACASL  L  G  IH HV +  + ++  +  AL+DMYAKCGR++ + ++F
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLF 405

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
            +       +WN +I G    G  + A+ LF  M   +++   +T++ VL ACA    ++
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALE 465

Query: 415 RGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            G Q  +  ++ +Y  +  V +   ++D+  + G + +A  ++  M  E +   W A++ 
Sbjct: 466 PGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMIS 522

Query: 474 ACRKHGEVEFGERLGKI--LLEME 495
               HG   +GE L     +LE E
Sbjct: 523 GYSVHG--LYGEALKTFESMLETE 544



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 191/432 (44%), Gaps = 43/432 (9%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N + Y ++ ++C        G  +H  ++K G C D+   +  +  Y  +  +  A ++ 
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------------------------- 226
           D+    + + +  LI GY +C     A  LF   +                         
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 227 --------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                         D +     A+I  ++  G  E AR++F+ +  KD ++W+ ++  Y 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           ++  ++E+L++F+ M+    KP  F  + VL AC  L   + G  +H    + S   +  
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +G  L+D+Y K G +D A +VFE+M   +V  W+ MI   A   ++++AIE+F +M+R  
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL 342

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P++ T A +L ACA    +  G Q   ++ ++ G+D  V     ++D+  + G +  +
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV-GLDMNVFVSNALMDMYAKCGRMENS 401

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMK 512
            ++ S  P   + + W  ++    + G  E    L K +LE + Q       + +R    
Sbjct: 402 LQLFSESPNCTDVS-WNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 513 ERGIKTNPGSSM 524
              ++  PGS +
Sbjct: 461 IAALE--PGSQI 470


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/629 (37%), Positives = 349/629 (55%), Gaps = 64/629 (10%)

Query: 12  HHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTL 71
           HH+KP+            S+   +D+L      S   L+Q HA I+K+           L
Sbjct: 20  HHVKPQS-----------SETLKIDLLRN--FNSPFELRQVHAQIIKTNAPLSIL---PL 63

Query: 72  VKCHANSRFS-NFELALKVFNSV--HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
            +      F+ +F  A ++F  V   KP  FVWNS L+A  E + P   I L+  +   D
Sbjct: 64  TRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD 123

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+ FT  +V +AC        G  +H  V K G                         
Sbjct: 124 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF------------------------ 159

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                  +S++   N ++  Y  CG++  A+ LF+    ++  ++N MI+   + G  E 
Sbjct: 160 -------RSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  LF+ M +++  +W+++I GY + G  KEA+ +F +M+   +K  +  +  VLAACA 
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGALD G+ IH++  R+    +  +   L+DMY KCG L+ A KVFE+M+ + V +W+AM
Sbjct: 273 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 332

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLAMHGRA++A+ LF  M +  + P+ +TF  +L AC+H G+I  G +    M + YG
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P++EHYGC+VDLL RAG L EA E I +MPM+PN  VW ALLGACR H  VE  E   
Sbjct: 393 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 452

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           K LLE++P N               R +D A++RK MK+R +K  PG S I V+GV+HEF
Sbjct: 453 KHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEF 512

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             G+ SHP  ++I+   ++++E+++++GY PN+S VL DI+E EK      HSEKLA+ F
Sbjct: 513 VAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVF 572

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKL 623
           G +NT     IR++KNLR+CEDCHSA ++
Sbjct: 573 GLMNTPAETPIRIMKNLRICEDCHSAFQI 601


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 335/572 (58%), Gaps = 56/572 (9%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T+ K C+      EG  +HA ++ +    D+ ++++ + +YA  G +  AR++ D+ S  
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 198 DVICWNALIDGY-------------------------------LKCGDIEGAKELFKSTK 226
           DV+ W ALI GY                               LK     G+ ++ +  +
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 227 ----------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                     D N     A++  +AR    EEA+ +F+ M  K+E++W+A+I GY + G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             +A  +F+ M R+ +KP  F  S VL ACAS+G+L+QG W+H  + +    + A +G  
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAK G ++ A KVF+ +  ++V +WN+M+ G + HG    A++ F +M R ++ P+
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPN 319

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF CVL+AC+HAG++D G      M++ Y ++P++ HY  +VDLLGRAG+L  A + I
Sbjct: 320 DITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFI 378

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCD 502
           S MP++P AAVW ALLGACR H  +E G    + + E++                  R +
Sbjct: 379 SEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWN 438

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           D AK+RK+MKE G+K  P  S +++   +H F   D +HPQ +EI+ M ++I +K+K  G
Sbjct: 439 DAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIG 498

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+SS VL  +D++E+E   +YHSEKLA+AF  +NT PG+TIR+ KN+R+C DCHSA K
Sbjct: 499 YVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFK 558

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +SK+ +R+IIVRD  R+HHF +G CSC D+W
Sbjct: 559 FVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 44/368 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA++L S    D  +  TL+  +A  +  +   A K+F+ +   +V  W +++    
Sbjct: 35  KIIHALLLNSRFRDDLVMQNTLLNLYA--KCGDLVYARKLFDEMSSRDVVTWTALITGYS 92

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEAD-KEGVQVHAHVVKNGLCGD 167
           +H+ P   + L  EM+ +  KPN+FT  ++ KA S +   D  +G Q+H   ++ G   +
Sbjct: 93  QHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSN 152

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           V+V  + + MYA    + +A+ I D     + + WNALI GY + G  + A  LF +   
Sbjct: 153 VYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLR 212

Query: 228 KNT-----------------GSY----------------------NAMISGFARFGRFEE 248
           +N                  GS                       N ++  +A+ G  E+
Sbjct: 213 ENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIED 272

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A+K+F+ +  +D ++W++++ GY++ G  K AL+ F EM R +I P      CVL AC+ 
Sbjct: 273 AKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSH 332

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNA 367
            G LD+G    D +K+ ++         +VD+  + G LD A +   +M +K     W A
Sbjct: 333 AGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGA 392

Query: 368 MIGGLAMH 375
           ++G   MH
Sbjct: 393 LLGACRMH 400



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 174/375 (46%), Gaps = 39/375 (10%)

Query: 8   TDLPHHLKPE-------EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           T    H +P+       E+    +  ++F+  ++L   +    T     +Q H + L+ G
Sbjct: 89  TGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYG 148

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
           +  + YVS  ++  +A  R  + E A  +F+ +   N   WN+++       +  +   L
Sbjct: 149 YDSNVYVSCAILDMYA--RCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCL 206

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           +S M+  + KP  FTY +V  AC+   + ++G  VHA ++K G      V ++ + MYA 
Sbjct: 207 FSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAK 266

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKSTKDKNTGSYNAM 236
            G +  A+++ D  +K DV+ WN+++ GY + G     ++  +E+ ++    N  ++  +
Sbjct: 267 SGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCV 326

Query: 237 ISGFARFGRFEEARKLFNEM---NDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           ++  +  G  +E R  F+ M   N + +I+ +  ++D   + G+   A++  +EM    I
Sbjct: 327 LTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEM---PI 383

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL-------GT--ALVDMYAK 343
           KP   V   +L AC           +H +++      + +        GT   L ++YA 
Sbjct: 384 KPTAAVWGALLGACR----------MHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 344 CGRLDMAWKVFEDMK 358
            GR + A KV + MK
Sbjct: 434 AGRWNDAAKVRKMMK 448


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/660 (34%), Positives = 364/660 (55%), Gaps = 57/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H ++LK G   D Y++ + +  H  SRF    LA  +F+++   ++  WN+++    
Sbjct: 159 RKVHCLVLKLGFECDVYIAASFI--HFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFY 216

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +    + ++ EM       +  T  ++   C   +    GV +H + +K GL  D+ 
Sbjct: 217 LNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLF 276

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG-------------YLKCGDIE 216
           V ++ I MYA FG +  A  I +     D++ WN+L+               Y K   I 
Sbjct: 277 VCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIG 336

Query: 217 GAKELFK----STKDKNTGSY-----------------------NAMISGFARFGRFEEA 249
              +L      ++     G++                       NA+I  +A+ G  + A
Sbjct: 337 VVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSA 396

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
           RK+F  +  KD I+W+++I GY+++G   EA++V++ M+      P +     +L A + 
Sbjct: 397 RKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ 456

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LGAL QG+  H  + +N +  D  + T LVDMY KCG+L  A  +F ++  +   +WNA+
Sbjct: 457 LGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAI 516

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I    +HG    A++LF +MQ E ++PD ITF  +LSAC+H+G++D G      MQ+ YG
Sbjct: 517 ISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYG 576

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P ++HYGC+VDL GRAG+L +A   + +MP+ P+ +VW ALLGACR H  VE    + 
Sbjct: 577 IRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVS 636

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             LL++E +N                 + V ++R L ++RG+K  PG S I+V+  I  F
Sbjct: 637 DHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVF 696

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            TG+ +HP+ +EIY  L+ +  K+K  GY P+ + VL D++++EKE     HSE+LA+AF
Sbjct: 697 YTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAF 756

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T P  T+++ KNLRVC DCH+ATK ISK+ +R+IIVRD  R+HHF++G CSC D+W
Sbjct: 757 GIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 246/508 (48%), Gaps = 56/508 (11%)

Query: 40  TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
           TK H +    KQ HA+++ SG  Q  ++S  L+  +A     +   A   F+ +   +V+
Sbjct: 54  TKVHLA----KQLHALLVVSGKTQSIFLSAKLINRYA--FLGDIPHARLTFDQIQTKDVY 107

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAH 158
            WNS++ A          +  ++E +     + + +T+P V +AC   +   +G +VH  
Sbjct: 108 TWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVHCL 164

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
           V+K G   DV++ +S I  Y+ FG V+ A  + D+    D+  WNA+I G+   G +  A
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224

Query: 219 KELFKSTKDKNTG---------------------------------------SYNAMISG 239
            E+F   + K+                                           NA+I+ 
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINM 284

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+FG    A  +FN+M  +D ++W++++  + ++     AL V+N+M    + P    L
Sbjct: 285 YAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTL 344

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
             + +  A LG       IH  V R    + D  LG A++DMYAK G +D A KVFE + 
Sbjct: 345 VSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLP 404

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGL 417
           +K+V +WN++I G + +G A++AI+++  M+      P++ T+  +L+A +  G + +G+
Sbjct: 405 VKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGM 464

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           +A   + + + +  ++    C+VD+ G+ G LA+A  +   +P + + + W A++     
Sbjct: 465 KAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGL 522

Query: 478 HGEVEFGERLGKILLEMEPQNRRCDDVA 505
           HG   +G +  K+  EM+ +  + D + 
Sbjct: 523 HG---YGLKAVKLFKEMQSEGVKPDHIT 547



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 138/271 (50%), Gaps = 10/271 (3%)

Query: 209 YLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           +L C  +  AK+L      S K ++      +I+ +A  G    AR  F+++  KD  TW
Sbjct: 50  FLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 265 SAIIDGYTKDGYYKEALEVFNE-MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           +++I  Y + G++  A++ FNE +    ++   +    V+ AC   G LD G  +H  V 
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVL 166

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +     D  +  + +  Y++ G + +A  +F++M ++++ TWNAMI G  ++G+  +A+E
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           +F +M+ + +  D +T + +L  C     I  G+    Y  ++ G++ ++     ++++ 
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKL-GLEFDLFVCNALINMY 285

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            + G L  AE + + M +  +   W +LL A
Sbjct: 286 AKFGELRSAETIFNQMKVR-DIVSWNSLLAA 315


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/698 (34%), Positives = 369/698 (52%), Gaps = 65/698 (9%)

Query: 12  HHLKPEEISATNIPTSEFSQKTILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGT 70
           + ++ E++  T +        T + ILN    T S +   + H  IL+ G   D +V   
Sbjct: 95  YQMQEEDVMPTKV--------TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTA 146

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +  ++  +   A   F  +   +V  W +++ AC++H++      LY  M      
Sbjct: 147 LINMY--NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 204

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PNK T  TVF A        EG  +++ V    +  DV V +S + M+   G +  AR++
Sbjct: 205 PNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRL 264

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS-----------YNAMIS- 238
            +D    DV+ WN +I  Y++  +   A  LF   +     +           Y ++ S 
Sbjct: 265 FEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSL 324

Query: 239 -------------GFAR-----------FGRFE---EARKLFNEMNDKDEITWSAIIDGY 271
                        G+ R           +GR E   +A K+F +M  KD ITW+ +   Y
Sbjct: 325 AKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAY 384

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            ++G+ KEAL++F EMQ +  +P    L  VL  CA L AL +G  IH H+  N   ++ 
Sbjct: 385 AQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEM 444

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V+ TAL++MY KCG++  A  VFE M  +++  WN+M+G  A HG  D+ ++LF +MQ +
Sbjct: 445 VVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLD 504

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
             + D ++F  VLSA +H+G +  G Q    M Q + I P  E YGC+VDLLGRAG + E
Sbjct: 505 GEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQE 564

Query: 452 AEEVISSMP-MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------- 501
           A +++  +    P+  +W  LLGACR H + +  +   + +LE +P +            
Sbjct: 565 AVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYA 624

Query: 502 -----DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
                D V +MRKLM+ RG+K  PG S I++   +HEF  GD SHP+   IY  L  +  
Sbjct: 625 AAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNS 684

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           +++  GY P++  +L D+++E KE    YHSE+LAIAFG ++T PG  +RVIKNLRVC D
Sbjct: 685 EMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSD 744

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+ATK ISK+  R+I+VRD  R+H+F++G+CSC D+W
Sbjct: 745 CHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 233/497 (46%), Gaps = 46/497 (9%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H ++ H  +   G  Q++ V G L++ +A     +   A +VF  + + +VF W  ++  
Sbjct: 23  HGRRVHWHVCDRGFEQNNLVCGHLIQMYAQC--GSVPEAQQVFEILERKDVFAWTRMIGI 80

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  +  R + ++ +M   D  P K TY  +  AC+ TE+ K+G+++H  +++ G  GD
Sbjct: 81  YCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 140

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK- 226
           V V ++ I MY   G V  A          DV+ W A+I   ++      A+ L++  + 
Sbjct: 141 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQL 200

Query: 227 --------------------------------------DKNTGSYNAMISGFARFGRFEE 248
                                                 + +    N+ ++ F   G   +
Sbjct: 201 DGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGD 260

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR+LF +M D+D +TW+ +I  Y ++  + EA+ +F  +Q+D IK        +L    S
Sbjct: 261 ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L +L +G  IH+ VK      D V+ TAL+ +Y +C     AWK+F DM  K+V TW  M
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 380

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
               A +G   +A++LF +MQ E  RP   T   VL  CAH   + +G Q  +++ +  G
Sbjct: 381 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE-NG 439

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
              E+     ++++ G+ G +AEA  V   M  + +  VW ++LGA  +HG   + E L 
Sbjct: 440 FRMEMVVETALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHG--YYDETL- 495

Query: 489 KILLEMEPQNRRCDDVA 505
           ++  +M+    + D V+
Sbjct: 496 QLFNQMQLDGEKADAVS 512



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 28/315 (8%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  +A+ G   EA+++F  +  KD   W+ +I  Y + G Y  AL +F +MQ + + P 
Sbjct: 46  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 105

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           K     +L ACAS  +L  G+ IH  + +     D  +GTAL++MY KCG +  AW  F+
Sbjct: 106 KVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFK 165

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++ ++V +W AMI     H +   A  L+ +MQ + + P++IT   V +A      +  
Sbjct: 166 RLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSE 225

Query: 416 G--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           G  + +L   + M   + +V      +++ G AG L +A  +   M ++ +   W     
Sbjct: 226 GKFIYSLVSSRVM---ESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTW----- 276

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVNGVI 531
                           I++    QN    +  ++   +++ GIK N  +   M++V   +
Sbjct: 277 ---------------NIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSL 321

Query: 532 HEFRTGDGSHPQVKE 546
                G   H  VKE
Sbjct: 322 TSLAKGKVIHELVKE 336



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 180/438 (41%), Gaps = 53/438 (12%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP+   +  + + CS  +    G +VH HV   G   +  V    IQMYA  G V +A+Q
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY---------------- 233
           + +   + DV  W  +I  Y + GD + A  +F   ++++                    
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 234 -----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                                   A+I+ + + G    A   F  +  +D ++W+A+I  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             +   +  A  ++  MQ D + P K  L  V  A      L +G +I+  V    +  D
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +  + ++M+   G L  A ++FEDM  ++V TWN +I     +    +A+ LF ++Q+
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           + ++ + ITF  +L+       + +G + +  + +  G D +V     ++ L GR     
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR---------C 501
           +A ++   M    +   W  +   C  + +  F +   ++  EM+ + RR          
Sbjct: 361 QAWKIFVDMG-SKDVITWTVM---CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 416

Query: 502 DDVAKMRKLMKERGIKTN 519
           D  A +  L K R I ++
Sbjct: 417 DTCAHLAALQKGRQIHSH 434



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 2/196 (1%)

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            KP       +L  C+S   +D G  +H HV       + ++   L+ MYA+CG +  A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VFE ++ K+VF W  MIG     G  D A+ +F++MQ E + P ++T+  +L+ACA   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            +  G++    + Q  G + +V     ++++  + G +  A +    +    +   W A+
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE-HRDVVSWTAM 178

Query: 472 LGACRKHGEVEFGERL 487
           + AC +H +      L
Sbjct: 179 IAACVQHDQFALARWL 194


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/658 (34%), Positives = 355/658 (53%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H +++ +G   + +    +V  +A  R    E A K+F  + + ++  WN+V+    
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCR--QIEDAYKMFERMPQRDLVSWNTVVAGYA 219

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    R + +  +M     KP+  T  +V  A +  +A + G  +H +  + G    V+
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN 279

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ +  Y   G V  AR +    S  +V+ WN +IDGY + G+ E A   F    D+ 
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 230 T----------------------GSY-----------------NAMISGFARFGRFEEAR 250
                                  G Y                 N++IS +++  R + A 
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAA 399

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F  +  K  +TW+A+I GY ++G   EAL +F EMQ   IKP  F L  V+ A A L 
Sbjct: 400 SVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS 459

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
              Q  WIH    R  +  +  + TAL+D +AKCG +  A K+F+ M+ + V TWNAMI 
Sbjct: 460 VTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMID 519

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   +G   +A++LF +MQ   ++P+ ITF  V++AC+H+G+++ G+     M++ YG++
Sbjct: 520 GYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLE 579

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HYG +VDLLGRAG L +A + I  MP++P   V  A+LGACR H  VE GE+    
Sbjct: 580 PTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADE 639

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L +++P +                 D VA++R  M+++GI+  PG S++++   +H F +
Sbjct: 640 LFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYS 699

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HPQ K IY  L+ + +++K  GY P+++ +  D++E+ KE     HSE+LAIAFG 
Sbjct: 700 GSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGL 758

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G  I + KNLRVC DCH ATK IS V  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 759 LNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 233/514 (45%), Gaps = 76/514 (14%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-HKPNVFVWN 102
           TS + L Q   +I+K+G + +H     L+      +F++   A +VF  V HK +V +++
Sbjct: 55  TSLKELHQILPLIIKNGFYNEHLFQTKLISLFC--KFNSITEAARVFEPVEHKLDV-LYH 111

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           ++L+   +++     +  Y  M   +  P  + +  + +        + G ++H  V+ N
Sbjct: 112 TMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITN 171

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL- 221
           G   ++   ++ + +YA    +  A ++ +   + D++ WN ++ GY + G    A ++ 
Sbjct: 172 GFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVV 231

Query: 222 --------------------------------------FKSTKDKNTGSYNAMISGFARF 243
                                                 F++  +       AM+  + + 
Sbjct: 232 LQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKC 291

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G    AR +F  M+ ++ ++W+ +IDGY ++G  +EA   F +M  + ++P    +   L
Sbjct: 292 GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGAL 351

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            ACA+LG L++G ++H  +    I  D  +  +L+ MY+KC R+D+A  VF ++K K V 
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVV 411

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR-----GLQ 418
           TWNAMI G A +G  ++A+ LF +MQ   ++PD  T   V++A A   +  +     GL 
Sbjct: 412 TWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLA 471

Query: 419 ALTYM-----------------------QQMYGIDPE--VEHYGCIVDLLGRAGYLAEAE 453
             T M                       ++++ +  E  V  +  ++D  G  G+  EA 
Sbjct: 472 IRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREAL 531

Query: 454 EVISSM---PMEPNAAVWEALLGACRKHGEVEFG 484
           ++ + M    ++PN   + +++ AC   G VE G
Sbjct: 532 DLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 8/267 (2%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +IS F +F    EA ++F  +  K ++ +  ++ GY K+   ++A+  +  M+ D++ P 
Sbjct: 82  LISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPV 141

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            +  + +L        L +G  IH  V  N    +    TA+V++YAKC +++ A+K+FE
Sbjct: 142 VYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFE 201

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA--HAGMI 413
            M  +++ +WN ++ G A +G A  A+++  +MQ    +PD IT   VL A A   A  I
Sbjct: 202 RMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRI 261

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            R +    +     G +  V     ++D   + G +  A  V   M    N   W  ++ 
Sbjct: 262 GRSIHGYAFRA---GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTMID 317

Query: 474 ACRKHGEVE--FGERLGKILLEMEPQN 498
              ++GE E  F   L  +   +EP N
Sbjct: 318 GYAQNGESEEAFATFLKMLDEGVEPTN 344



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 8/206 (3%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           + +L  C SL  L Q   I   + +N    + +  T L+ ++ K   +  A +VFE ++ 
Sbjct: 48  AILLELCTSLKELHQ---ILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEH 104

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K    ++ M+ G A +    DA+  + +M+ +++ P    F  +L        + RG + 
Sbjct: 105 KLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRG-RE 163

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +  M    G    +     +V+L  +   + +A ++   MP + +   W  ++    ++G
Sbjct: 164 IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP-QRDLVSWNTVVAGYAQNG 222

Query: 480 EVEFGERLGKILLEMEPQNRRCDDVA 505
              F  R  +++L+M+   ++ D + 
Sbjct: 223 ---FARRAVQVVLQMQEAGQKPDSIT 245


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 320/572 (55%), Gaps = 84/572 (14%)

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAH 158
           +WN+++R     + P   I LY  M+    + PN FT+P +  +C+   + + G +VH+H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
           ++K+                               G +SD+   NALI  Y         
Sbjct: 61  IIKH-------------------------------GFESDLFVRNALIHLY--------- 80

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                                 + FG    AR LF+E   +D ++++ +I GY +    +
Sbjct: 81  ----------------------SVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 118

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI-HDHVKRNSICVDAVLGTAL 337
            AL +F EMQ       +  L  VL+ACA LGA D G  + H +++      + +L  A+
Sbjct: 119 SALCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAV 174

Query: 338 VDMYAKCGRLDMAWKVFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           +DMYAKCG +D A ++F  +   MK  F +N+MI GLA HG  + AI +F ++    ++P
Sbjct: 175 MDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKP 234

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D +TF  VL AC H+G+I+ G +    M   YGI P++EHYGC+VDLLGR G L EA ++
Sbjct: 235 DEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDL 294

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRC 501
           +  MP E N+ +W ALL ACR HG V+ GE  G+ LLEME Q+               + 
Sbjct: 295 VQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQW 354

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++  ++RK+M++ GI+  PG S I++ G IH F   D SHPQ KEI LMLK +  +LK  
Sbjct: 355 EEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSA 414

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY PN++QV+FDIDEEEKE+   YHSEKLA+AFG +   P  TIR++KNLR+C DCH A 
Sbjct: 415 GYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAF 474

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           KL+S+++ R+I VRD +R+HHFRNG CSC DF
Sbjct: 475 KLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 46/296 (15%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H+ I+K G   D +V   L+  H  S F N  LA  +F+     ++  +N++++   E
Sbjct: 56  EVHSHIIKHGFESDLFVRNALI--HLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 113

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
            N+P   + L+ EM   D    + T   V  AC+   A   G +++   ++NG+      
Sbjct: 114 VNQPESALCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVF----- 164

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST-KDKN 229
                                      + I   A++D Y KCG I+ A E+F+   K+  
Sbjct: 165 -------------------------NQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 199

Query: 230 TG-SYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVF 284
           TG  +N+MI+G A+ G  E A  +F E+       DE+T+  ++      G  +E  ++F
Sbjct: 200 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLF 259

Query: 285 NEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
             M     IKP+     C++      G L++    +D V++     ++V+  AL+ 
Sbjct: 260 ESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEA---YDLVQKMPFEANSVIWRALLS 312



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 14/194 (7%)

Query: 86  ALKVFNSVHK--PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           AL++F  V K     FV+NS++    +H      I+++ E++    KP++ T+  V  AC
Sbjct: 187 ALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCAC 246

Query: 144 SITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVIC 201
             +   +EG ++   +    G+   +      + +   +GC+ +A  ++     +++ + 
Sbjct: 247 GHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVI 306

Query: 202 WNALID-----GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           W AL+      G +K G+I G K L    + ++   Y  + +  A   ++EEAR++   M
Sbjct: 307 WRALLSACRTHGNVKIGEIAGQKLL--EMEAQHGARYVLLSNILADANQWEEARQVRKVM 364

Query: 257 ND---KDEITWSAI 267
            D   +    WS I
Sbjct: 365 EDHGIRKPPGWSYI 378


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 362/636 (56%), Gaps = 65/636 (10%)

Query: 50  KQAHAVILKSG---HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWNSV 104
           K+ HAVIL SG      + ++   L   +A+   ++   A  +F  + +   +V  W ++
Sbjct: 35  KKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSS--ARHLFYQIPRSHKDVTDWTTL 92

Query: 105 LRACLEH-NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           L + ++H  +P      + EM       +     +VF  C+  E    G Q    +VK G
Sbjct: 93  LTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMG 152

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           L         G+ +  C                      NA+++ Y+KCG +E  + +F 
Sbjct: 153 L---------GLGVKVC----------------------NAIMNMYVKCGLVEEVRRVFC 181

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              ++N  S++ ++ G  ++   E  R +F+EM +++E+ W+ +I GY  +G+ +E   +
Sbjct: 182 EMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLL 241

Query: 284 FNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALVDMY 341
            +EM  R ++      LS +L+ACA  G +  G W+H + +K     +  ++GTALVDMY
Sbjct: 242 LDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMY 301

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +DMA+KVF+ +  + V  WNAM+GGLAMHGR    +++F KM  E+ +PD +TF 
Sbjct: 302 AKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMI-EEAKPDDLTFM 360

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VLSAC+H+G++D+G      ++  YG  P++EHY C+VD+LGRAG+L EA  +I  MPM
Sbjct: 361 AVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPM 420

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
            PN  V  +LLG+C  HG+++ GER+ + L++M+  N               + D    +
Sbjct: 421 CPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSL 480

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+++K +GI+  PG S I V G IH+F  GD SHP  KEIY  L  +I++L++ GY PN+
Sbjct: 481 RQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNT 540

Query: 568 SQVLFDIDE---------EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           +  +F   +         EEKE A   HSEKLA+ FG I+T PGA + + KNLR+C+DCH
Sbjct: 541 TNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCH 600

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SA K++SK++ R+I++RDR R+H F++G CSC+D+W
Sbjct: 601 SAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/662 (34%), Positives = 356/662 (53%), Gaps = 60/662 (9%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  L   +A   K G+F++   S +L K          E A K+F+ +   +V  WNS++
Sbjct: 170 WNLLMNGYA---KIGNFRE---SLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              + +    + + L+ +M+ +    +  T  +V   CS T     G  +H + +K    
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG 283

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-------------- 211
            ++ + +  + MY+  G +N A Q+ +   +  V+ W ++I GY +              
Sbjct: 284 KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 343

Query: 212 ---------------------CGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRF 246
                                 G +E  K++    K+    S     NA++  +A+ G  
Sbjct: 344 EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +A  +F+EM  KD ++W+ +I GY+K+    EAL +F EMQ +  KP    ++C+L AC
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPAC 462

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           ASL AL++G  IH H+ RN   +D  +  ALVDMY KCG L +A  +F+ +  K++ +W 
Sbjct: 463 ASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWT 522

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            MI G  MHG   +AI  F +M+   + PD ++F  +L AC+H+G++D G      M+  
Sbjct: 523 VMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNN 582

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
             I+P+ EHY CIVDLL RAG L++A + I  MP+EP+A +W ALL  CR + +V+  E+
Sbjct: 583 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEK 642

Query: 487 LGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + + + E+EP+N               + ++V K+R+ +  RG++ NPG S I++ G +H
Sbjct: 643 VAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVH 702

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F TGD SHP   +I L+LKK   ++K EG+ P     L   D+ EKE A   HSEK+A+
Sbjct: 703 IFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAM 762

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG ++  PG T+RV KNLRVC DCH   K +SK+ KRDII+RD  R+HHF++G CSC  
Sbjct: 763 AFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRG 822

Query: 653 FW 654
            W
Sbjct: 823 HW 824



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 185/358 (51%), Gaps = 17/358 (4%)

Query: 123 EMVGVDSKPNK--FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           E++    KP+    TY +V + C+  ++ ++G ++H+ +  N +  D  + S  + MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G + + R+I D  +   V  WN L++GY K G+   +  LFK  ++             
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELG----------- 197

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
               R E ARKLF+E+ D+D I+W+++I GY  +G  ++ L++F +M    I      + 
Sbjct: 198 --IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            V+A C++ G L  G  +H +  + S   +  L   L+DMY+K G L+ A +VFE M  +
Sbjct: 256 SVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER 315

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
            V +W +MI G A  G +D ++ LF +M++E + PD  T   +L ACA  G+++ G    
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH 375

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
            Y+++   +  ++     ++D+  + G + +A  V S M ++ +   W  ++G   K+
Sbjct: 376 NYIKE-NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGGYSKN 431



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 53/262 (20%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G  + A+E+ N+  +  ++ R +    VL  CA L ++  G  IH  ++ N + VD VLG
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLG 139

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN---------------------------- 366
           + LV MY  CG L    ++F+ +  ++VF WN                            
Sbjct: 140 SKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR 199

Query: 367 ---------------------AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
                                +MI G   +G ++  ++LF +M    +  D  T   V++
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
            C++ GM+  G +AL           E+    C++D+  ++G L  A +V  +M  E + 
Sbjct: 260 GCSNTGMLLLG-RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSV 317

Query: 466 AVWEALLGACRKHGEVEFGERL 487
             W +++    + G  +   RL
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRL 339


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/691 (32%), Positives = 364/691 (52%), Gaps = 61/691 (8%)

Query: 19   ISATNIPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
            ++ + I  S+F+  T+L      C  S   +  +  H++ ++ G   D ++S  LV  ++
Sbjct: 321  MTGSEINFSKFTLSTVLK----GCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYS 376

Query: 77   NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
                +    ALKVF  +  P+V  W++++    +  +      ++  M      PN+FT 
Sbjct: 377  KCGLAG--DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTL 434

Query: 137  PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
             ++  A +       G  +HA V K G   D  V ++ + MY   G V    ++ +  + 
Sbjct: 435  ASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTN 494

Query: 197  SDVICWNALIDGY-----------------------------------LKCGDIEGAKE- 220
             D+I WNAL+ G+                                       D++  K+ 
Sbjct: 495  RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 554

Query: 221  ---LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
               + K++ D N     A++  +A+    E+A  +FN +  +D   W+ I+ GY +DG  
Sbjct: 555  HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 614

Query: 278  KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            ++A++ F +MQR+ +KP +F L+  L+ C+ +  LD G  +H    +     D  + +AL
Sbjct: 615  EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASAL 674

Query: 338  VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
            VDMYAKCG ++ A  VF+ +  ++  +WN +I G + HG+   A++ F  M  E   PD 
Sbjct: 675  VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDE 734

Query: 398  ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            +TF  VLSAC+H G+I+ G +    + ++YGI P +EHY C+VD+LGRAG   E E  I 
Sbjct: 735  VTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIE 794

Query: 458  SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDD 503
             M +  N  +WE +LGAC+ HG +EFGER    L E+EP+                  DD
Sbjct: 795  EMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDD 854

Query: 504  VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
            V  +R LM  RG+K  PG S ++VNG +H F + DGSHP+++EI+L L+ + +KL   GY
Sbjct: 855  VTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGY 914

Query: 564  SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
            +PN+  VL ++ + EK+    YHSE+LA+AF  ++T    TIR+ KNLR+C DCH   K 
Sbjct: 915  TPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKS 974

Query: 624  ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IS++  ++++VRD   +HHF+NG CSC +FW
Sbjct: 975  ISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 217/470 (46%), Gaps = 43/470 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  +K G F D +V   LV  +A  +     LA +VF  + K N   WN++L    
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYA--KCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +  +V++L+  M G +   +KFT  TV K C+ +   + G  VH+  ++ G   D  
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           +    + MY+  G    A ++       DV+ W+A+I    + G    A E+FK  +   
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 227 ------------------------------------DKNTGSYNAMISGFARFGRFEEAR 250
                                               + +    NA+++ + + G  ++  
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F    ++D I+W+A++ G+  +      L +FN+M  +   P  +    +L +C+SL 
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +D G  +H  + +NS+  +  +GTALVDMYAK   L+ A  +F  +  +++F W  ++ 
Sbjct: 547 DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVA 606

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A  G+ + A++ F +MQRE ++P+  T A  LS C+    +D G Q L  M    G  
Sbjct: 607 GYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQS 665

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            ++     +VD+  + G + +AE V   + +  +   W  ++    +HG+
Sbjct: 666 GDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQ 714



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 225/485 (46%), Gaps = 46/485 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ++KSG   D ++  +LV  +A    +N+  A KVF  + + +V  W +++   +
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANY--ACKVFGEIPERDVVSWTALITGFV 205

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   ++L+ EM     + N+FTY T  KACS+    + G QVHA  +K G   D+ 
Sbjct: 206 AEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLF 265

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V S+ + +YA  G +  A ++     K + + WNAL++G+ + GD E    LF       
Sbjct: 266 VGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSE 325

Query: 223 -------KSTKDK---NTGSYNA----------------------MISGFARFGRFEEAR 250
                   ST  K   N+G+  A                      ++  +++ G   +A 
Sbjct: 326 INFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDAL 385

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F  + D D ++WSAII    + G  +EA EVF  M+   + P +F L+ +++A   LG
Sbjct: 386 KVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L  G  IH  V +     D  +  ALV MY K G +    +VFE    +++ +WNA++ 
Sbjct: 446 DLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLS 505

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   +   D  + +F +M  E   P+  TF  +L +C+    +D G Q    + +   +D
Sbjct: 506 GFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK-NSLD 564

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
                   +VD+  +  +L +AE + + + ++ +   W  ++    + G+   GE+  K 
Sbjct: 565 GNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQ---GEKAVKC 620

Query: 491 LLEME 495
            ++M+
Sbjct: 621 FIQMQ 625



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 198/449 (44%), Gaps = 49/449 (10%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           F+      +S ++PN    N +    +E    WR +         DSK     Y  + + 
Sbjct: 86  FQKTPSKLSSPNRPNSTPGNKIPET-VEKKRIWRGLDF-------DSKGRLRQYSGMLRT 137

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+      EG  +H  V+K+G+  D H+ +S + +YA  G  N A ++  +  + DV+ W
Sbjct: 138 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 197

Query: 203 NALIDGYLKCGDIEGAKELF----KSTKDKNTGSY------------------------- 233
            ALI G++  G   GA  LF    +   + N  +Y                         
Sbjct: 198 TALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIK 257

Query: 234 ----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
                     +A++  +A+ G    A ++F  M  ++ ++W+A+++G+ + G  ++ L +
Sbjct: 258 VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNL 317

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  M   +I   KF LS VL  CA+ G L  G  +H    R    +D  +   LVDMY+K
Sbjct: 318 FCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSK 377

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG    A KVF  ++  +V +W+A+I  L   G++ +A E+F +M+   + P++ T A +
Sbjct: 378 CGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASL 437

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           +SA    G +  G +++      YG + +      +V +  + G + +   V  +     
Sbjct: 438 VSAATDLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEA-TTNR 495

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILL 492
           +   W ALL     +   + G R+   +L
Sbjct: 496 DLISWNALLSGFHDNETCDTGLRIFNQML 524


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 342/638 (53%), Gaps = 95/638 (14%)

Query: 42  CHTSWQHLKQAHAVILKSG----------HFQDHYVSGTLVKCHANSRFS-NFELALKVF 90
           C +S   L+  HA  ++ G          H     VS +    +A + F+     A  VF
Sbjct: 28  CASSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVLSYAYNVF 87

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
             +H PNVF WN++ R   E + P   +  Y +M+    +P+  TYP + KA S +   +
Sbjct: 88  TMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVR 147

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG  +H+  ++NG                                +S V   N+L+  Y 
Sbjct: 148 EGEAIHSVTIRNGF-------------------------------ESLVFVQNSLLHIYA 176

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
            CGD E A                                 +F  M D+D +   ++I+G
Sbjct: 177 ACGDTESA-------------------------------HNVFELMRDRDLVAXISVING 205

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           +  +G   EAL +F EM  + ++P  F +  +L+A A LGAL+ G  +H ++ +  +  +
Sbjct: 206 FALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLREN 265

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           + +  +L+D+YAKC   D  W+       +   +W ++I GLA++G  ++A+ELF +M+ 
Sbjct: 266 SHVTNSLLDLYAKC---DAIWE-----XERNAVSWTSLIVGLAVNGFGEEALELFREMEG 317

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           + + P  ITF  VL AC+H GM+D G      M++ +GI P +EHYGC+VDLL RAG + 
Sbjct: 318 QGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVK 377

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           +A E I +MP++PNA  W  LLGAC  HG +  GE     LL++EP++            
Sbjct: 378 QAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYT 437

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R  DV  +R+ M + G+K   G S++++   ++EF  G+ SHPQ +++Y +L+KI E
Sbjct: 438 SECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITE 497

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
            LK+EGY P+++ VL DI+EEEKE A  YHSEK AIAF  +NT PG TIRV+KNLRVC D
Sbjct: 498 LLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCAD 557

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH A KL++KV+ R+I++RDR R+HHFR G CSC D+W
Sbjct: 558 CHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/623 (34%), Positives = 352/623 (56%), Gaps = 54/623 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + +V  WNS++   ++    W  I ++ EM+G   +P+  T   + KAC  
Sbjct: 199 AQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQ 258

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           +   K G+  H++V+  G+  DV V +S + MY+  G    A  + D      +I WNA+
Sbjct: 259 SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAM 318

Query: 206 IDGYLKCGDIEGAKELFK----STKDKNTGSYNAMISG---------------------- 239
           I GY++ G I  +  LF+    S    ++G+  ++I G                      
Sbjct: 319 ISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKEL 378

Query: 240 -------------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                        +++ G  ++A  +F  M  K+ ITW+A++ G +++GY ++AL++F +
Sbjct: 379 ESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQ 438

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           MQ +K+      L  ++  CA LG+L +G  +H H  R+    DAV+ +AL+DMYAKCG+
Sbjct: 439 MQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGK 498

Query: 347 LDMAWKVFED-MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           +  A K+F +   +K+V   N+MI G  MHG    A+ ++ +M  E+++P++ TF  +L+
Sbjct: 499 IHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H+G+++ G      M++ + + P+ +HY C+VDL  RAG L EA+E++  MP +P+ 
Sbjct: 559 ACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPST 618

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            V EALL  CR H     G ++   L+ ++  N              R+ + V  +R LM
Sbjct: 619 DVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLM 678

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           + +G+K  PG S+I+V   ++ F   D SHP   +IY +L+ +  +++ EGY P++S VL
Sbjct: 679 RMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVL 738

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++E  K      HSE+LAIAFG ++T  G+ I++ KNLRVC DCH+ TK ISK+ +R+
Sbjct: 739 RDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQRE 798

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD  R+HHF NGKCSCNDFW
Sbjct: 799 IIVRDANRFHHFVNGKCSCNDFW 821



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 227/515 (44%), Gaps = 79/515 (15%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H+K  HA I+K+    + +++  L++ +++  F     A  VF+    P   V N+++  
Sbjct: 62  HVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGH--ARNVFDQCSLPETAVCNAMIAG 119

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            L + +   V  L+  M   D + N +T     KAC+    D+ G+++    V+ G    
Sbjct: 120 FLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLH 179

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
           ++V SS +      G +  A+++ D   + DV+CWN++I GY++ G    + ++F     
Sbjct: 180 LYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIG 239

Query: 223 -----------------KSTKDKNTG----SY-------------NAMISGFARFGRFEE 248
                              +  K  G    SY              +++  ++  G    
Sbjct: 240 GGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGS 299

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F+ M  +  I+W+A+I GY ++G   E+  +F  + +         L  ++  C+ 
Sbjct: 300 AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQ 359

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
              L+ G  +H  + R  +    VL TA+VDMY+KCG +  A  VF  M  K V TW AM
Sbjct: 360 TSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAM 419

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT-YMQQMY 427
           + GL+ +G A+DA++LF +MQ EK+  + +T   ++  CAH G + +G      +++  Y
Sbjct: 420 LVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGY 479

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVI------------SSMPM-------------- 461
             D  +     ++D+  + G +  AE++             +SM M              
Sbjct: 480 AFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGV 537

Query: 462 ---------EPNAAVWEALLGACRKHGEVEFGERL 487
                    +PN   + +LL AC   G VE G+ L
Sbjct: 538 YSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKAL 572



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 182/427 (42%), Gaps = 50/427 (11%)

Query: 122 SEMVGVDSKPNKFTYPTVFKAC--SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
           S  V V   P     P+VF +     +        +HA ++KN +  +  + +  I++Y+
Sbjct: 31  STFVSVHHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYS 90

Query: 180 CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--STKDKNTGSY---- 233
             G +  AR + D  S  +    NA+I G+L+         LF+   + D    SY    
Sbjct: 91  DLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMF 150

Query: 234 ---------------------------------NAMISGFARFGRFEEARKLFNEMNDKD 260
                                            ++M++   + G   +A+K+F+ M +KD
Sbjct: 151 ALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKD 210

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            + W++II GY + G + E++++F EM    ++P    ++ +L AC   G    G+  H 
Sbjct: 211 VVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHS 270

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           +V    +  D  + T+LVDMY+  G    A  VF+ M  + + +WNAMI G   +G   +
Sbjct: 271 YVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPE 330

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGC 438
           +  LF ++ +     D  T   ++  C+    ++ G  L +    +++   +  +     
Sbjct: 331 SYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKEL---ESHLVLSTA 387

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           IVD+  + G + +A  V   M  + N   W A+L    ++G   + E   K+  +M+ + 
Sbjct: 388 IVDMYSKCGAIKQATIVFGRMG-KKNVITWTAMLVGLSQNG---YAEDALKLFCQMQEEK 443

Query: 499 RRCDDVA 505
              + V 
Sbjct: 444 VAANSVT 450



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 140/307 (45%), Gaps = 16/307 (5%)

Query: 27  SEFSQKTILDILNTKCHTS-WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           S F   T++ ++     TS  ++ +  H+ I++    + H V  T +     S+    + 
Sbjct: 343 SGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRK-ELESHLVLSTAI-VDMYSKCGAIKQ 400

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  VF  + K NV  W ++L    ++      + L+ +M       N  T  ++   C+ 
Sbjct: 401 ATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAH 460

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK-SDVICWNA 204
             +  +G  VHAH +++G   D  + S+ I MYA  G ++ A ++ ++     DVI  N+
Sbjct: 461 LGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNS 520

Query: 205 LIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I GY   G    A  ++    ++    N  ++ ++++  +  G  EE + LF+ M    
Sbjct: 521 MIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDH 580

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           ++      ++ ++D +++ G  +EA E+  +M     +P   VL  +L+ C +    + G
Sbjct: 581 DVRPQHKHYACLVDLHSRAGRLEEADELVKQM---PFQPSTDVLEALLSGCRTHKNTNMG 637

Query: 316 IWIHDHV 322
           I I D +
Sbjct: 638 IQIADRL 644


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/541 (39%), Positives = 313/541 (57%), Gaps = 45/541 (8%)

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
           D  P+ FT   V KAC        G  +H    K G   ++ +++  + +Y   G +  A
Sbjct: 5   DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE 247
             + +   + D + WN +I    K GDI+GA   F    +KN  S+ +MISGF + G+  
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA  LF ++ D                               + ++P +  +  VLAACA
Sbjct: 125 EAIDLFMKLED-------------------------------EAVRPNEVTVVSVLAACA 153

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LG LD G  +H++  ++    +  +   L+DMY KCG L+ A +VF +M+ + V +W+A
Sbjct: 154 DLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSA 213

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI GLAMHG+A++A+ LF +M +  ++P+ +TF  +L AC+H G+ID G +    M   Y
Sbjct: 214 MIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADY 273

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           G+ P++EHYGC+VDL  RAG L EA E I SMP++PN  VW ALLG C+ H  ++  E  
Sbjct: 274 GVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEA 333

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K L E++P N               R +D A++RKLMK+RG+K   G S I VNGV+HE
Sbjct: 334 IKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHE 393

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD +HPQ ++I  +  K++ K+K  GY+P +S VL D++E+EKE     HSEKLA+ 
Sbjct: 394 FVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVV 453

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG + T  G  IR++KNLRVCEDCH+A K+IS +  R+IIVRDR R+H FR+G+CSC DF
Sbjct: 454 FGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDF 513

Query: 654 W 654
           W
Sbjct: 514 W 514



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 29/335 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A   F  +   NV  W S++   ++  +P   I L+ ++     +PN+ T  +V  AC+ 
Sbjct: 95  AYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACAD 154

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G  VH +  K+G   +VHV ++ I MY   GC+  AR++  +  +  V+ W+A+
Sbjct: 155 LGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAM 214

Query: 206 IDGYLKCGDIEGA----KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           I G    G  E A     E+ K     N  ++  ++   +  G  +E R+ F  M     
Sbjct: 215 IAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYG 274

Query: 262 IT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
           +      +  ++D +++ G  +EA E    M    IKP   V   +L  C     +D   
Sbjct: 275 VIPQIEHYGCVVDLFSRAGLLEEAHEFILSM---PIKPNGVVWGALLGGCKVHKNIDLAE 331

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK---MKEVFTWNAM----- 368
               H+       D      + ++YA+  R + A +V + MK   +K+   W+++     
Sbjct: 332 EAIKHLSELDPLNDGYY-VVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGV 390

Query: 369 ----IGGLAMHGRADDAI----ELFFKMQREKMRP 395
               + G   H +A+D      +L  KM+R    P
Sbjct: 391 VHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAP 425



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 10/224 (4%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H    KSG  ++ +V  TL+  +   +    E A +VF  + +  V  W++++     H
Sbjct: 164 VHEYSTKSGFKRNVHVCNTLIDMYV--KCGCLENARRVFYEMEERTVVSWSAMIAGLAMH 221

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDVHV 170
            +    + L+SEM+ +  KPN  T+  +  ACS      EG +  A +  + G+   +  
Sbjct: 222 GQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEH 281

Query: 171 KSSGIQMYACFGCVNKARQ-ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
               + +++  G + +A + IL    K + + W AL+ G     +I+ A+E  K   +  
Sbjct: 282 YGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELD 341

Query: 228 -KNTGSYNAMISGFARFGRFEEA---RKLFNEMNDKDEITWSAI 267
             N G Y  + + +A   R+E+A   RKL  +   K    WS+I
Sbjct: 342 PLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSI 385


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 342/609 (56%), Gaps = 24/609 (3%)

Query: 70  TLVKCHANSRFSN--FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
           +++  +A   F N  + L  ++ +S  KP++  WN +L     H     V+++   M G 
Sbjct: 305 SMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 364

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
             KPN  +  +V +A S       G + H +V++NG   DV+V +S I MY     +  A
Sbjct: 365 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 424

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARF 243
           + + D+    ++  WN+L+ GY   G  E A  L    + +       ++N MISG+A +
Sbjct: 425 QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 484

Query: 244 GRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           G  +EA  + ++        + ++W+A+I G ++ G  +++L+ F +MQ++ + P    +
Sbjct: 485 GCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASI 544

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           +C+L ACASL  L +G  IH    RN    D  + TAL+DMY+K   L  A KVF  ++ 
Sbjct: 545 TCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN 604

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K + +WN MI G A+ G   +AI +F +MQ+  + PD ITF  +LSAC ++G+I  G + 
Sbjct: 605 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKY 664

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M   Y I P +EHY C+VDLLGRAGYL EA ++I +MP++P+A +W ALLG+CR H 
Sbjct: 665 FDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHK 724

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            ++F E   K L ++EP N               R +D+  +R+LM   G++     S I
Sbjct: 725 NLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWI 784

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
            +N  +H F + +  HP   +IY  L +++ ++K  GY P+ + V  ++DE EK+     
Sbjct: 785 QINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLS 844

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           H+EKLAI +G I    G  IRVIKN R+C DCHSA K IS V  R++ +RD VR+HHFR 
Sbjct: 845 HTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFRE 904

Query: 646 GKCSCNDFW 654
           GKCSCNDFW
Sbjct: 905 GKCSCNDFW 913



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 201/442 (45%), Gaps = 37/442 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H  ++K G   D Y+   L+  +   R    E A +VF+ +  P   +WN  +   L+
Sbjct: 154 EIHGCLIKRGFDLDVYLRCALMNFYG--RCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 211

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
             +  + + L+ +M     K    T   V +AC    A     Q+H +V + GL  DV +
Sbjct: 212 SEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSL 271

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +  I MY+  G +  AR++ D     +   WN++I  Y   G +  A  LF   +  + 
Sbjct: 272 CNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDM 331

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
                                        D +TW+ ++ G+   GY +E L +   MQ +
Sbjct: 332 ---------------------------KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 364

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
             KP    ++ VL A + LG L+ G   H +V RN    D  +GT+L+DMY K   L  A
Sbjct: 365 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 424

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
             VF++MK + +F WN+++ G +  G  +DA+ L  +M++E ++PD +T+  ++S  A  
Sbjct: 425 QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 484

Query: 411 GMIDRGLQALTYMQQM--YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME---PNA 465
           G    G +AL  + Q    G+ P V  +  ++    +AG   ++ +  + M  E   PN+
Sbjct: 485 GC---GKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNS 541

Query: 466 AVWEALLGACRKHGEVEFGERL 487
           A    LL AC     ++ G+ +
Sbjct: 542 ASITCLLRACASLSLLQKGKEI 563



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 167/414 (40%), Gaps = 56/414 (13%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY-TKDGYYKEALEVFNEMQRDKIKP 294
           +IS +  FG F  A  +F     ++ + W++ ++ + +  G     LEVF E+    +  
Sbjct: 72  LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 131

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
              V S  L  C  +  +  G+ IH  + +    +D  L  AL++ Y +C  L+ A +VF
Sbjct: 132 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 191

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
            +M   E   WN  I       +    +ELF KMQ   ++ +  T   VL AC   G ++
Sbjct: 192 HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 251

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
              Q   Y+ + +G+D +V     ++ +  + G L  A  V  SM    N + W +++ +
Sbjct: 252 AAKQIHGYVFR-FGLDSDVSLCNPLISMYSKNGKLELARRVFDSME-NRNTSSWNSMISS 309

Query: 475 CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
              +  + F      +  E+E  + + D                     ++  N ++   
Sbjct: 310 ---YAALGFLNDAWSLFYELESSDMKPD---------------------IVTWNCLL--- 342

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS---QVLFDIDEEEKETAPKYHSEKLA 591
            +G   H   +E+      I+++++ EG+ PNSS    VL  I E               
Sbjct: 343 -SGHFLHGYKEEVL----NILQRMQGEGFKPNSSSMTSVLQAISE--------------- 382

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
              GF+N        V++N   C D +  T LI    K   +   +  + + +N
Sbjct: 383 --LGFLNMGKETHGYVLRNGFDC-DVYVGTSLIDMYVKNHSLTSAQAVFDNMKN 433


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/682 (32%), Positives = 362/682 (53%), Gaps = 56/682 (8%)

Query: 27  SEFSQKTILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           ++FS+ T+  +L    +T S +  K  HA+ L+SG   D ++  +LV  +  S+      
Sbjct: 47  TKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMY--SKCGTVYD 104

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           ALKVF  +  P+V  W++++    +         L+  M    ++PN+FT  ++    + 
Sbjct: 105 ALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATN 164

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
               + G  +H  + K G   D  V +  I MY    CV    ++ +  +  D++ WNAL
Sbjct: 165 MGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNAL 224

Query: 206 IDGYL---KCGD---------IEGAK---------------------------ELFKSTK 226
           + G+     CG          +EG K                            + K++ 
Sbjct: 225 LSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSS 284

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D +     A++  +A+    E+A   F+ + ++D  +W+ II GY +    ++A++ F +
Sbjct: 285 DDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQ 344

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           MQR+ IKP ++ L+  L+ C+ +  L+ G  +H    +     D  +G+ALVD+Y KCG 
Sbjct: 345 MQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGC 404

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           ++ A  +F+ +  +++ +WN +I G + HG+ + A+E F  M  E + PD  TF  VLSA
Sbjct: 405 MEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSA 464

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+  G+++ G +    M ++YGI+P +EHY C+VD+LGRAG   E +  I  M + P + 
Sbjct: 465 CSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSL 524

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMK 512
           +WE +LGAC+ HG V+FGE+  K L EMEP                 R DDV  +R LM 
Sbjct: 525 IWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMT 584

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
            RGIK  PG S ++V+G +H F + DGSHP+++EIY  L K+ + L   GY P +  VL 
Sbjct: 585 SRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLH 644

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           ++  +EK     YHSE+LA++F  ++T+    IR+ KNLR+CEDCH   KLIS +  ++I
Sbjct: 645 NVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEI 704

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           +VRD  R+HHF+ G CSC D W
Sbjct: 705 VVRDIRRFHHFKRGTCSCQDRW 726



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 215/444 (48%), Gaps = 53/444 (11%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           ELA ++F  + + N   WN++L    +  +  +V+ L+ +M   ++K +KFT  TV K C
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           + T + +EG  +HA  +++G   D  +  S + MY+  G V  A ++       DV+ W+
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMIS-----GFARFGR--------- 245
           A+I G  + G  + A ELF   + K    N  + ++++S     G  R+G+         
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY 181

Query: 246 ---------------------FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                 E+  K+F  M + D ++W+A++ G+           +F
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIF 241

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M  +  KP  F    VL +C+SL   + G  +H H+ +NS   D  +GTALVDMYAK 
Sbjct: 242 YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKA 301

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             L+ A   F+ +  +++F+W  +I G A   +A+ A++ F +MQRE ++P+  T A  L
Sbjct: 302 RCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCL 361

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG------CIVDLLGRAGYLAEAEEVISS 458
           S C+H   ++ G       +Q++ +  +  H+G       +VDL G+ G +  AE +   
Sbjct: 362 SGCSHMATLENG-------RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKG 414

Query: 459 MPMEPNAAVWEALLGACRKHGEVE 482
           + +  +   W  ++    +HG+ E
Sbjct: 415 L-ISRDIVSWNTIISGYSQHGQGE 437



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 30/200 (15%)

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +++A ++F  M  K   +WNA++ G A  G     ++LF KM+  + +  + T + VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 407 CAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGC-IVDLLGRAGYLAEAEEVISSMPMEP 463
           CA+ G +  G  L AL  ++    ID   E  GC +VD+  + G + +A +V + +   P
Sbjct: 61  CANTGSLREGKVLHALA-LRSGCEID---EFLGCSLVDMYSKCGTVYDALKVFTKIR-NP 115

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPG-- 521
           +   W A++    + G  +                    + A++  LM+ +G + N    
Sbjct: 116 DVVAWSAMITGLDQQGHGQ--------------------EAAELFHLMRRKGARPNQFTL 155

Query: 522 SSMIDVNGVIHEFRTGDGSH 541
           SS++     + + R G   H
Sbjct: 156 SSLVSTATNMGDLRYGQSIH 175


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/629 (35%), Positives = 341/629 (54%), Gaps = 53/629 (8%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +F     A +VF+ +   +V  WNS++   ++         L+ EM G   KP+  T  +
Sbjct: 177 KFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTS 236

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + +AC      K G  +H +V+  GL  D+ V +S + MY+  G +  AR +       +
Sbjct: 237 LIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRN 296

Query: 199 VICWNALIDGYLKCGDIEGAKELF----------------------KSTKDKNTGSY--- 233
           ++ WNA+I G ++ G +  + +LF                        T    TG     
Sbjct: 297 LVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHG 356

Query: 234 -------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                         A++  +++ G  ++A  +FN M D++ ITW+A++ G  ++G+ ++A
Sbjct: 357 CAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDA 416

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L +F +MQ + I         ++ +CA LG+L +G  IH H+ R     D V  TALVDM
Sbjct: 417 LRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDM 476

Query: 341 YAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           YAKCG++++A ++F    + K+V  WN+MI G  MHG    A+ ++ KM  E ++P++ T
Sbjct: 477 YAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTT 536

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +LSAC+H+ ++++G+     M++ + I P  +HY C+VDLL RAG   EA+ +I  M
Sbjct: 537 FLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM 596

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P +P  AV EALL  CR H  +  G +    LL ++  N              RR D V 
Sbjct: 597 PFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVD 656

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
            +R LM+ RG+K  PG S+++    +H F  GD SHP  +EIY  L+ +   ++  GY P
Sbjct: 657 YIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVP 716

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++S VL D+DEE K      HSE+LAIAFG + T  G+ IR+ KNLRVC DCH+ TK IS
Sbjct: 717 DTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYIS 776

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+ KR+IIVRD  R+HHF NG+CSC D+W
Sbjct: 777 KIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 224/470 (47%), Gaps = 43/470 (9%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K  HA I+ +    D +V+  LVK +++ R  + E A  VF+   +P   + N++L   
Sbjct: 48  VKSTHAQIITNSLSTDQFVATKLVKAYSDLR--SLEAARYVFDQFFQPKGLLCNAMLCGY 105

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           L+       + L+  M   + + +  +     KAC+ +   + G+++ +  V+ G+  + 
Sbjct: 106 LQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNR 165

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
            V SS I     FG + +A+++ D     DV+CWN++I GY++ G  + A +LF      
Sbjct: 166 FVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGS 225

Query: 223 --KSTKDKNTGSYNA-------------------------------MISGFARFGRFEEA 249
             K +    T    A                                +  +++ G  E A
Sbjct: 226 GIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESA 285

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R +F +M  ++ ++W+A+I G  ++G   E+ ++F+ + R         +  +L  C+  
Sbjct: 286 RWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQT 345

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            +L  G  +H    R S   + +L TA+VD+Y+KCG L  A  VF  MK + V TW AM+
Sbjct: 346 ASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            GLA +G A+DA+ LF +MQ E +  + +TF  ++ +CAH G + RG     ++ ++ G 
Sbjct: 405 VGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRL-GF 463

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             ++ +   +VD+  + G +  AE + S   +  +  +W +++     HG
Sbjct: 464 AFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 165/373 (44%), Gaps = 42/373 (11%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
             HA ++ N L  D  V +  ++ Y+    +  AR + D   +   +  NA++ GYL+ G
Sbjct: 50  STHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSG 109

Query: 214 DIEGAKELFKSTK---------------------------------------DKNTGSYN 234
                 ELF   +                                       +KN    +
Sbjct: 110 RYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGS 169

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           +MIS   +FG+  EA+++F+ M +KD + W++II GY + G +  A ++F EM    IKP
Sbjct: 170 SMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKP 229

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               ++ ++ AC  +G L  G  +H +V    +  D ++ T+ VDMY+K G ++ A  VF
Sbjct: 230 SPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVF 289

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
             M  + + +WNAMI G   +G   ++ +LF ++ R     D  T   +L  C+    + 
Sbjct: 290 YKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLA 349

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G   + +   +   +  +     IVDL  + G L +A  V + M  + N   W A+L  
Sbjct: 350 TG--KILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAMLVG 406

Query: 475 CRKHGEVEFGERL 487
             ++G  E   RL
Sbjct: 407 LAQNGHAEDALRL 419



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTL 71
            ++ E I+A ++        T + ++++  H  S +  +  H  + + G   D      L
Sbjct: 422 QMQEEGIAANSV--------TFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTAL 473

Query: 72  VKCHANSRFSNFELALKVFN--SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           V  +A  +     LA ++F+  S+ K +V +WNS++     H   ++ + +Y +M+    
Sbjct: 474 VDMYA--KCGKINLAERIFSHGSISK-DVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGL 530

Query: 130 KPNKFTYPTVFKACSITEADKEGVQV 155
           KPN+ T+ ++  ACS +   ++G+ +
Sbjct: 531 KPNQTTFLSLLSACSHSRLVEQGISL 556


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/668 (34%), Positives = 350/668 (52%), Gaps = 93/668 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK------CHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           ++ H    K+G   D +V   L+       C  ++R         VF+ + + +V  W +
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARL--------VFDQMPERDVVSWTT 159

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           +L   +        + L  EM  V  K +     ++          K G  VH ++V+N 
Sbjct: 160 MLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRN- 218

Query: 164 LCGD----VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-CGDIEGA 218
             GD    V + ++ I MY   GC+  A+++ D  SK  V+ W  +I G ++ C   EGA
Sbjct: 219 -VGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGA 277

Query: 219 KELFKSTKDK---------------------NTGSY-----------------NAMISGF 240
           K   +  ++K                     + G +                  A+I  +
Sbjct: 278 KNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMY 337

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + G+   AR LFN +  KD   WS +I  Y       +   +F EM  + +KP    + 
Sbjct: 338 GKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMV 397

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            +L+ CA  GALD G W H ++ R+ + VD +L TAL++MYAKCG + +A  +F +   +
Sbjct: 398 SLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQR 457

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           ++  WN M+ G +MHG   +A+ELF +M+   + P+ ITF  +  AC+H+G++       
Sbjct: 458 DIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM------- 510

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
                        EHYGC+VDLLGRAG+L EA  +I +MPM PN  +W ALL AC+ H  
Sbjct: 511 -------------EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKN 557

Query: 481 VEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMID 526
           +  GE   + +LE++PQN              +R +DV  +R+ M   G+K  PG S I+
Sbjct: 558 LALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIE 617

Query: 527 VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYH 586
           V+G +H F++GD +  Q  ++Y M+ ++  KL+  GY+PN++ VL +IDEEEKE+A  YH
Sbjct: 618 VSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYH 677

Query: 587 SEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           SEKLA AFG I+T PG  IR++KNLR+C+DCH+ATKL+SK++ R IIVRDR R+HHF  G
Sbjct: 678 SEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEG 737

Query: 647 KCSCNDFW 654
            CSC  +W
Sbjct: 738 YCSCMGYW 745



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 204/472 (43%), Gaps = 47/472 (9%)

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-NK 133
           HA+   + F      F+  H      +N ++ +   ++ P    + Y  M   D+   + 
Sbjct: 29  HAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDN 88

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           F  P++ KAC+   +   G ++H    KNG   DV V ++ + MY   GC+  AR + D 
Sbjct: 89  FILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQ 148

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKEL----------------------FKSTKDKNTG 231
             + DV+ W  ++  Y++      A  L                      F +  D  +G
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSG 208

Query: 232 S-------------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                 A+I  + + G    A++LF+ ++ +  ++W+ +I G  
Sbjct: 209 RAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCI 268

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           +     E  + FN M  +K+ P +  L  ++  C  +G LD G W H ++ RN   +   
Sbjct: 269 RSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLA 328

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           L TAL+DMY KCG++  A  +F  +K K+V  W+ +I   A     D    LF +M    
Sbjct: 329 LVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNND 388

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           ++P+ +T   +LS CA AG +D G     Y+ + +G++ +V     ++++  + G +  A
Sbjct: 389 VKPNNVTMVSLLSLCAEAGALDLGKWTHAYINR-HGLEVDVILETALINMYAKCGDVTIA 447

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
             + +   M+ +  +W  ++     HG    G+   ++  EME      +D+
Sbjct: 448 RSLFNE-AMQRDIRMWNTMMAGFSMHG---CGKEALELFSEMESHGVEPNDI 495


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/391 (48%), Positives = 274/391 (70%), Gaps = 14/391 (3%)

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           K  L +F EMQ+  IK  +  L  +++ACA LGAL QG W H +V ++++ ++  +GTAL
Sbjct: 132 KSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTAL 191

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMY+KCG LD+A ++F+ +  ++   +NAMIGG A+HG    A++LF KM  E + PD 
Sbjct: 192 IDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDD 251

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +T    + +C+H G+++ G      M+++YG++P++EHYGC+VDLLGRAG L EAEE + 
Sbjct: 252 VTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVL 311

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDD 503
           +MPM+PNA +W +LLGA R HG +E GE + K L+++EP+                R DD
Sbjct: 312 NMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDD 371

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           V ++RKLMK+ GI   PGSS+++V G +HEF  GD +HP+ KEIYL L+++  +L   G+
Sbjct: 372 VKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGH 431

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
            P + +VLFDI+EEEKE A  YHSE+LAIAF  I +   A IR+IKNLRVC DCH+++KL
Sbjct: 432 KPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKL 491

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ISK+++R+IIVRDR R+HHF+ G CSC+D+W
Sbjct: 492 ISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 71/390 (18%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P+S      +L+    KC T    LKQ HA ++ +G     Y    ++   +   F++  
Sbjct: 6   PSSNHPTLQLLE----KCKT-LDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTH-- 58

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI--SLYSEMVGVDS-KPNKFTYPTVFK 141
            AL +FN +  P +F++N+++ + L + +P   I  SLYS ++   + KPN FT+P++FK
Sbjct: 59  -ALSIFNHIPNPTIFLYNTLISS-LANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFK 116

Query: 142 AC-------------------------SITEADK-----------------EGVQVHAHV 159
           AC                         S+ +A++                 +G   H +V
Sbjct: 117 ACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYV 176

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +K+ L  +  V ++ I MY+  GC++ A Q+ D     D +C+NA+I G+   G    A 
Sbjct: 177 LKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQAL 236

Query: 220 ELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDG 270
           +LFK    +       +    +   +  G  EE   +F  M +   +      +  ++D 
Sbjct: 237 DLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDL 296

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR--NSIC 328
             + G  +EA E    M    +KP   +   +L A    G L+ G  +  H+ +      
Sbjct: 297 LGRAGRLREAEERVLNM---PMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 353

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            + VL   L +MYA   R D   +V + MK
Sbjct: 354 GNYVL---LSNMYASINRWDDVKRVRKLMK 380


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/627 (34%), Positives = 341/627 (54%), Gaps = 57/627 (9%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E A ++F  +   +V  WN+++ A  +       I LY +M   D +P+  T+ +V  
Sbjct: 172 SLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLS 228

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS      +G ++HA +   G   D+ ++++ + MYA   C++ A +I     + DV+ 
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288

Query: 202 WNALIDGYLKCGDIEGAKELFK----------------------STKDKNTG-------- 231
           W+A+I  + +    + A E +                       S  D   G        
Sbjct: 289 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348

Query: 232 ---------SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                    +  A++  +  +G  +EAR LF+++ ++DE  W+ +I GY+K G+    LE
Sbjct: 349 GNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLE 408

Query: 283 VFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           ++ EM+   K+   K + SCV++ACASLGA       H  ++ + +  D VL T+LV+MY
Sbjct: 409 LYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMY 468

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           ++ G L+ A +VF+ M  ++   W  +I G A HG    A+ L+ +M+ E   P  +TF 
Sbjct: 469 SRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFM 528

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL AC+HAG+ ++G Q    +Q  Y + P + HY CI+DLL RAG L++AEE+I++MP+
Sbjct: 529 VVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPV 588

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
           EPN   W +LLGA R H +V+        + +++P +                   +A +
Sbjct: 589 EPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASV 648

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R  M  RG+K   GSS I+V   IHEF  GD SHP+ +EI+  L+++  K+K  GY P S
Sbjct: 649 RNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPES 708

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
            +VL D+ E+EKE   + HSEKLAIAFG I T PG T+R+   LR+C DCHSA K IS +
Sbjct: 709 EEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAI 768

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +R+IIVRD  R+H FR+G+CSC D+W
Sbjct: 769 ARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 206/433 (47%), Gaps = 43/433 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A   F+++ + N + W S+L A  ++      + LY  M   D +PN   Y TV  AC+ 
Sbjct: 77  ARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACAS 133

Query: 146 TEADKEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            +A +EG  +H+ +    GL  DV +++S + MYA  G +  A+++ +  S   V  WNA
Sbjct: 134 IKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNA 193

Query: 205 LIDGYLKCGDIEGAKELFKST------------------------------------KDK 228
           +I  Y + G  E A  L++                                       + 
Sbjct: 194 MIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL 253

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +    NA+++ +AR    ++A K+F  +  +D ++WSA+I  + +   + EA+E +++MQ
Sbjct: 254 DLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQ 313

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + ++P  +  + VL ACAS+G L  G  +HD +  N   +  V GTALVD+Y   G LD
Sbjct: 314 LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLD 373

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSAC 407
            A  +F+ ++ ++   W  +IGG +  G     +EL+ +M+     P  +I ++CV+SAC
Sbjct: 374 EARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISAC 433

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           A  G      QA + ++   G+  +      +V++  R G L  A +V   M      A 
Sbjct: 434 ASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA- 491

Query: 468 WEALLGACRKHGE 480
           W  L+    KHGE
Sbjct: 492 WTTLIAGYAKHGE 504



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 183/400 (45%), Gaps = 51/400 (12%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y    + C   E+ +   Q+H  +       +V + +  ++ Y   G V  AR   D  +
Sbjct: 30  YRDALRQCQDLESVR---QIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIA 85

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFK-------------------STKDKNTGSY--- 233
           + +   W +++  Y + G    A +L+K                   S K    G     
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHS 145

Query: 234 ---------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                          N++++ +A+ G  E+A++LF  M+ +   +W+A+I  Y + G+++
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE 205

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EA+ ++ +M    ++P     + VL+AC++LG LDQG  IH  +      +D  L  AL+
Sbjct: 206 EAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALL 262

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            MYA+C  LD A K+F+ +  ++V +W+AMI   A     D+AIE + KMQ E +RP+  
Sbjct: 263 TMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYY 322

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TFA VL ACA  G +  G +A+       G    + +   +VDL    G L EA  +   
Sbjct: 323 TFASVLLACASVGDLRAG-RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQ 381

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +    +  +W  L+G   K      G R G + L  E +N
Sbjct: 382 IE-NRDEGLWTVLIGGYSKQ-----GHRTGVLELYREMKN 415



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 48/308 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +  H  IL +G ++   V+GT LV  + +  + + + A  +F+ +   +  +W  ++   
Sbjct: 341 RAVHDQILGNG-YKITLVNGTALVDLYTS--YGSLDEARSLFDQIENRDEGLWTVLIGGY 397

Query: 109 LEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +      V+ LY EM      P  K  Y  V  AC+   A  +  Q H+ +  +G+  D
Sbjct: 398 SKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD 457

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------DI 215
             + +S + MY+ +G +  ARQ+ D  S  D + W  LI GY K G            ++
Sbjct: 458 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMEL 517

Query: 216 EGA-----------------------KELFKSTKD-----KNTGSYNAMISGFARFGRFE 247
           EGA                       K+LF S +       N   Y+ +I   +R GR  
Sbjct: 518 EGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLS 577

Query: 248 EARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFV-LSCVLA 304
           +A +L N M  + +++TWS+++         K A     ++ + D + P  +V LS V A
Sbjct: 578 DAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHA 637

Query: 305 ACASLGAL 312
              +L  +
Sbjct: 638 VTGNLAGM 645


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/658 (34%), Positives = 355/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H+ ++K G   D  + G+L+  +   +  + E A + F +    NV +WN +L A  
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYV--KCFDIETAHEYFLTTETENVVLWNVMLVAYG 391

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +         ++ +M      PN++TYP++ + C+   A   G Q+H  V+K+G   +V+
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V S  I MYA  G ++ AR IL    + DV+ W A+I GY +      A +LF+  +++ 
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG 511

Query: 229 ----NTG-----------------------SY-----------NAMISGFARFGRFEEAR 250
               N G                       SY           NA++S +AR GR ++A 
Sbjct: 512 IRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAY 571

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             F +++ KD I+W+A+I G+ + G+ +EAL+VF++M +  ++   F     ++A A+  
Sbjct: 572 LAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTA 631

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            + QG  IH  + +     +      L+ +Y+KCG ++ A + F +M  K V +WNAMI 
Sbjct: 632 NIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMIT 691

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G + HG   +A+ LF +M++  + P+ +TF  VLSAC+H G+++ GL     M + +G+ 
Sbjct: 692 GYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLV 751

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P+ EHY C+VDLLGRA  L  A E I  MP+EP+A +W  LL AC  H  +E GE   + 
Sbjct: 752 PKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARH 811

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           LLE+EP++               + D   + R++MK+RG+K  PG S I+V   IH F  
Sbjct: 812 LLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFV 871

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD  HP  ++IY  +  + E+    GY  +   +L D+++E+K+     HSEKLA+AFG 
Sbjct: 872 GDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGL 931

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++      IRVIKNLRVC DCH+  K +SK+  R I+VRD  R+HHF  G CSC D+W
Sbjct: 932 LSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 223/470 (47%), Gaps = 45/470 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  I+K G   + +V   LV  +  SR+ N   A ++F+ +H+ +   +NS++    
Sbjct: 233 EQLHGFIVKWGLSSETFVCNALVTLY--SRWGNLIAAEQIFSKMHRRDRISYNSLISGLA 290

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     R + L+ +M     KP+  T  ++  AC+   A  +G Q+H++V+K G+  D+ 
Sbjct: 291 QRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLI 350

Query: 170 VKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------------IE 216
           ++ S + +Y  CF  +  A +        +V+ WN ++  Y + G+            IE
Sbjct: 351 IEGSLLDLYVKCFD-IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 217 GA---------------------------KELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G                             ++ KS    N    + +I  +A+ G  + A
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTA 469

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R +   + ++D ++W+A+I GYT+   + EAL++F EM+   I+      S  ++ACA +
Sbjct: 470 RGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGI 529

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            AL+QG  IH     +    D  +G ALV +YA+CGR   A+  FE +  K+  +WNA+I
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G A  G  ++A+++F +M +  +  +  TF   +SA A+   I +G Q    M +  G 
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT-GY 648

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           D E E    ++ L  + G + +A+     MP E N   W A++    +HG
Sbjct: 649 DSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHG 697



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 244/517 (47%), Gaps = 50/517 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCH-ANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           K+ HA I KSG   +  +   L+  + A+    N   A+K+F+ +   NV  WN V+   
Sbjct: 30  KKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDN---AIKLFDDIPSSNVSFWNKVISGL 86

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV-QVHAHVVKNGLCGD 167
           L      +V+ L+S M+  +  P++ T+ +V +ACS  +A  +   Q+HA ++ +G    
Sbjct: 87  LAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSS 146

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA--------- 218
             V +  I +Y+  G V+ A+ + +     D + W A+I G  + G  + A         
Sbjct: 147 PLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHK 206

Query: 219 -------------------KELFKSTK-----------DKNTGSYNAMISGFARFGRFEE 248
                               ELFK  +              T   NA+++ ++R+G    
Sbjct: 207 SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIA 266

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A ++F++M+ +D I+++++I G  + G+   AL++F +MQ D +KP    ++ +L+ACAS
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GA  +G  +H +V +  +  D ++  +L+D+Y KC  ++ A + F   + + V  WN M
Sbjct: 327 VGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           +      G   ++  +F +MQ E + P++ T+  +L  C   G +D G Q  T + +  G
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS-G 445

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
               V     ++D+  + G L  A  ++  +  E +   W A++    +H    F E L 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHD--LFAEAL- 501

Query: 489 KILLEMEPQNRRCDDVAKMRKLMKERGIKT-NPGSSM 524
           K+  EME Q  R D++     +    GI+  N G  +
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI 538



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 213/482 (44%), Gaps = 55/482 (11%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           +Q  +Q HA I+  G      V   L+  +  S+  + +LA  VF  +   +   W +++
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLY--SKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               ++      I L+ +M      P  + + +V  AC+  E  K G Q+H  +VK GL 
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            +  V ++ + +Y+ +G +  A QI     + D I +N+LI G  + G  + A +LF+  
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 226 --------------------------KDKNTGSY-------------NAMISGFARFGRF 246
                                     K K   SY              +++  + +    
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDI 365

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A + F     ++ + W+ ++  Y + G   E+  +F +MQ + + P ++    +L  C
Sbjct: 366 ETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
            SLGALD G  IH  V ++    +  + + L+DMYAK G LD A  + + ++ ++V +W 
Sbjct: 426 TSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWT 485

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI G   H    +A++LF +M+ + +R D I F+  +SACA       G+QAL   QQ+
Sbjct: 486 AMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA-------GIQALNQGQQI 538

Query: 427 Y------GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +      G   ++     +V L  R G   +A      +  + N + W AL+    + G 
Sbjct: 539 HAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGH 597

Query: 481 VE 482
            E
Sbjct: 598 CE 599



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 6/271 (2%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G +++V  +  L +G    G +  AK+L    FKS  D      + +I  +   G  + A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            KLF+++   +   W+ +I G        + L +F+ M  + + P +   + VL AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 310 GALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            A  Q    IH  +  +      ++   L+D+Y+K G +D+A  VFE + +K+  +W AM
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I GL+ +GR D+AI LF +M +  + P    F+ VLSAC    +   G Q   ++ + +G
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK-WG 243

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           +  E      +V L  R G L  AE++ S M
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 364/701 (51%), Gaps = 93/701 (13%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +S    ++ H  +  SG      ++  LV  +A  RF +   A ++F S+   +   WN+
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           V+ A  +  +    + ++ EM   D KPN  TY  V    S  E   EG ++HA +V NG
Sbjct: 179 VILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL-- 221
              D+ V ++ I MY   G  ++AR++ D   K D++ WN +I  Y++ GD   A EL  
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 222 ------FKSTK-------------------------------DKNTGSYNAMISGFARFG 244
                 FK TK                               D       A+++ +A+ G
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA------------------------ 280
             EEARK+FN M ++D + WS +I  Y  +GY K+A                        
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITT 417

Query: 281 ----------LEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
                     +++F EM     +KP       VL ACASLG L +   +H  +  + +  
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELES 477

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           + V+   L++MYA+CG L+ A ++F   K K V +W AM+   + +GR  +A++LF +M 
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMD 537

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            E ++PD +T+  +L  C H G +++G +  T M +++G+ P  +H+  +VDLLGR+G L
Sbjct: 538 LEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRL 597

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------- 500
            +A+E++ SMP EP+   W   L ACR HG++E GE   + + E++P +           
Sbjct: 598 FDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIY 657

Query: 501 -----CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
                 + VA +RK M+ERG+K  PG S I+V+G +HEF +G   HP+  EI   L ++ 
Sbjct: 658 AAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLH 717

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT-DPGATIRVIKNLRVC 614
             ++  GY P++  VL D+ E EKET   YHSEK+AIAFG +++   G  IRV+KNLRVC
Sbjct: 718 GLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVC 777

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHF-RNGKCSCNDFW 654
            DCH+ATK I+++  RDII+RD  R+H F  +GKCSC D+W
Sbjct: 778 SDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 223/494 (45%), Gaps = 83/494 (16%)

Query: 86  ALKVFNSV--HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           A  VF S+   + NV  WN+++ A  ++      + LY  M       +  T+ +V  AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           S   +  +G ++H  V  +GL     + ++ + MYA FG V  A+++       D   WN
Sbjct: 121 S---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWN 177

Query: 204 ALIDGYLKCGDIEGAKELFKSTK---DKNTGSYNAMISGFA------------------- 241
           A+I  + + GD  GA  +FK  K     N+ +Y  +ISGF+                   
Sbjct: 178 AVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 242 ----------------RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                           + G   EAR++F++M  +D ++W+ +I  Y ++G + EALE++ 
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           ++  +  K  K     +L AC+S+ AL QG  +H H+    +  +  + TALV+MYAKCG
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD------------------------- 380
            L+ A KVF  MK ++   W+ +IG  A +G   D                         
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITT 417

Query: 381 ---------AIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
                    A+++F +M     ++PD +TF  VL ACA  G +   ++AL        ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELE 476

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
             V     ++++  R G L EAE + ++   E     W A++ A  ++G   + E L  +
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYG--RYAEAL-DL 532

Query: 491 LLEMEPQNRRCDDV 504
             EM+ +  + DDV
Sbjct: 533 FQEMDLEGVKPDDV 546



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 196/413 (47%), Gaps = 41/413 (9%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +D +P+  T+ TV  +CS      EG  +H  +  +    D  V ++ I MY     +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 187 ARQILD--DGSKSDVICWNALIDGYLK--------------------------------C 212
           AR + +  D  + +V+ WNA+I  Y +                                C
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 213 GDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
             +   +E+    F S  D      NA+++ +ARFG   +A+++F  +  +DE +W+A+I
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             +++ G +  AL +F EM+ D +KP       V++  ++   L +G  IH  +  N   
Sbjct: 181 LAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            D V+ TAL++MY KCG    A +VF+ MK +++ +WN MIG    +G   +A+EL+ K+
Sbjct: 240 SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKL 299

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             E  +  + TF  +L AC+    + +G    +++ +  G+D EV     +V++  + G 
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGS 358

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC 501
           L EA +V ++M    +A  W  L+GA   +G  +   +  K+   +  ++  C
Sbjct: 359 LEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTIC 410


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 343/637 (53%), Gaps = 60/637 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP----NVF 99
           +S +HL++ HA +L SG           +   A+S   + +     +  +  P     + 
Sbjct: 104 SSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLL 163

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV------ 153
             NS+LRA      P      + ++  V   P+ +++  + +A +   A           
Sbjct: 164 AHNSLLRALARGRRPHLAFGAFRDLPLV---PDNYSFTFLVRAATALAAAAASALDAALI 220

Query: 154 --QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
              VHA  +++G  GD HV+S  + MYA  G V  AR    + +  DV+C          
Sbjct: 221 AGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVC---------- 270

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                  AM+   A  G  + AR+LF+ M  +D + W+A+I GY
Sbjct: 271 ---------------------VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGY 309

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
              G  +EAL +F+EM+       +  L   L ACA LGAL++G W+H       + +  
Sbjct: 310 VHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSV 369

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            LGTAL+DMY+KCG +  A +VF+ M  + V+TW + + GLAM+G   D + LF +M+  
Sbjct: 370 TLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMEST 429

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + P+ +TF  VL  C+ AG++D G      M+  +GIDP +EHYGC+VDL GRAG L +
Sbjct: 430 GVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDD 489

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------- 498
           A   I+ MP+EP+  VW ALL A R H  VE G+     L+ +E +N             
Sbjct: 490 AVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYAD 549

Query: 499 -RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
            +    V+ +R +MK +G+K  PG S I+V G +HEF  G  +HP+ KEI +ML ++ ++
Sbjct: 550 SQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQR 609

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+++GY  N+ +VLFDI+EE+KE A   HSEKLAIAFG +       IR++KNLRVCEDC
Sbjct: 610 LRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDC 669

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H  TK+ISKVF R+I++RDR R+HHF++G CSC D+W
Sbjct: 670 HDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 342/637 (53%), Gaps = 60/637 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP----NVF 99
           +S +HL++ HA +L SG           +   A+S   + +     +  +  P     + 
Sbjct: 104 SSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLL 163

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV------ 153
             NS+LRA      P      + ++      P+ +++  + +A +   A           
Sbjct: 164 AHNSLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALI 220

Query: 154 --QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
              VHA  +++G  GD HV+S  + MYA  G V  AR    + +  DV+C          
Sbjct: 221 AGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVC---------- 270

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                  AM+   A  G  + AR+LF+ M  +D + W+A+I GY
Sbjct: 271 ---------------------VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGY 309

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
              G  +EAL +F+EM+       +  L   L ACA LGAL++G W+H       + +  
Sbjct: 310 VHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSV 369

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            LGTAL+DMY+KCG +  A +VF+ M  + V+TW + + GLAM+G   D + LF +M+  
Sbjct: 370 TLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMEST 429

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + P+ +TF  VL  C+ AG++D G      M+  +GIDP +EHYGC+VDL GRAG L +
Sbjct: 430 GVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDD 489

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------- 498
           A   I+ MP+EP+  VW ALL A R H  VE G+     L+ +E +N             
Sbjct: 490 AVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYAD 549

Query: 499 -RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
            +    V+ +R +MK +G+K  PG S I+V G +HEF  G  +HP+ KEI +ML ++ ++
Sbjct: 550 SQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQR 609

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+++GY  N+ +VLFDI+EE+KE A   HSEKLAIAFG +       IR++KNLRVCEDC
Sbjct: 610 LRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDC 669

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H  TK+ISKVF R+I++RDR R+HHF++G CSC D+W
Sbjct: 670 HDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 342/637 (53%), Gaps = 60/637 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP----NVF 99
           +S +HL++ HA +L SG           +   A+S   + +     +  +  P     + 
Sbjct: 97  SSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLL 156

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV------ 153
             NS+LRA      P      + ++      P+ +++  + +A +   A           
Sbjct: 157 AHNSLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALI 213

Query: 154 --QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
              VHA  +++G  GD HV+S  + MYA  G V  AR    + +  DV+C          
Sbjct: 214 AGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVC---------- 263

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                  AM+   A  G  + AR+LF+ M  +D + W+A+I GY
Sbjct: 264 ---------------------VTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGY 302

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
              G  +EAL +F+EM+       +  L   L ACA LGAL++G W+H       + +  
Sbjct: 303 VHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSV 362

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            LGTAL+DMY+KCG +  A +VF+ M  + V+TW + + GLAM+G   D + LF +M+  
Sbjct: 363 TLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMEST 422

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + P+ +TF  VL  C+ AG++D G      M+  +GIDP +EHYGC+VDL GRAG L +
Sbjct: 423 GVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDD 482

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------- 498
           A   I+ MP+EP+  VW ALL A R H  VE G+     L+ +E +N             
Sbjct: 483 AVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYAD 542

Query: 499 -RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
            +    V+ +R +MK +G+K  PG S I+V G +HEF  G  +HP+ KEI +ML ++ ++
Sbjct: 543 SQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQR 602

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+++GY  N+ +VLFDI+EE+KE A   HSEKLAIAFG +       IR++KNLRVCEDC
Sbjct: 603 LRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDC 662

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H  TK+ISKVF R+I++RDR R+HHF++G CSC D+W
Sbjct: 663 HDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/667 (36%), Positives = 352/667 (52%), Gaps = 106/667 (15%)

Query: 11  PHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILK---SGHFQDHYV 67
           P HL P  IS ++     F+    L +    C T    LKQ HA  ++   S H    ++
Sbjct: 10  PSHL-PHAISNSD----SFTHHRRLLLFLNSC-TCISQLKQLHAQTIRTTSSHHPNTFFL 63

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLYSEMVG 126
              ++     S   +   A +VF+ +  PN F+WN+++RAC    +     I+LY  M+ 
Sbjct: 64  YSRILHF---SSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLE 120

Query: 127 VDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
             S   +K T+P V KAC+   A  EG Q+HA                            
Sbjct: 121 QGSVMQDKHTFPFVLKACAYLFALSEGEQIHA---------------------------- 152

Query: 186 KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGR 245
              QIL  G  SDV   N+L+  Y  C                                R
Sbjct: 153 ---QILKLGFDSDVYINNSLVHFYATCD-------------------------------R 178

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            + A+ +F+ M+++  ++W+ +ID + + G +  AL +F EMQ+   +P  + +  +  A
Sbjct: 179 LDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQK-FFEPDGYTIQSIANA 237

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA +G+L  GI             D +L T+LVDMY KCG L++A ++F  M  ++V +W
Sbjct: 238 CAGMGSLSLGI-----------VNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSW 286

Query: 366 NAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           N+MI G + HG    A+E F  M R EK+ P+ ITF  VLSAC H G++  G +    M 
Sbjct: 287 NSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMV 346

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC-RKHGEVEF 483
             Y I PE+EHYGC+VDLL RAG + EA +V+S+MPM P+  +W +LL AC +++  VE 
Sbjct: 347 TEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVEL 406

Query: 484 GERLGKILLEME---------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
            E + + +LE E                   R +DV  +RKLM ++G+   PG S I+++
Sbjct: 407 SEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEID 466

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV-LFDIDEEEKETAPKYHS 587
           GV HEF  GD SHPQ +EIY  L  I E+++  GYSP+SSQ  + D   + K+ + + HS
Sbjct: 467 GVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHS 526

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           E+LAIAFG + T PG  IR+ KNLRVC +CH  TKLIS+VF R+IIVRDR+R+HHF++G 
Sbjct: 527 ERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGA 586

Query: 648 CSCNDFW 654
           CSC D+W
Sbjct: 587 CSCMDYW 593


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 329/576 (57%), Gaps = 59/576 (10%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  +   C    A +EG +VHAH++K      V++ +  I +Y    C+  AR + D+  
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMIS---GFARF----- 243
           + +V+ W A+I GY + G    A  LF    +S  + N  ++  ++S   GF+ F     
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 244 ---------------------------GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                                      GR  EAR +F  + ++D ++ +AII GY + G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EALE+F  +QR+ +       + +L A + L ALD G  +H HV R  +    VL  +
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS 252

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRP 395
           L+DMY+KCG L+ A K+F +M ++ V +WNAM+ G + HG+  + ++LF  M+ E K++P
Sbjct: 253 LIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKP 312

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYG---IDPEVEHYGCIVDLLGRAGYLAEA 452
           D +TF  VLS C+H G+ D+GL+    M  M G   I+  +EHYGC++DLLGRAG + EA
Sbjct: 313 DSVTFLAVLSGCSHGGLEDKGLEMFDEM--MNGGDEIEAGIEHYGCVIDLLGRAGRVEEA 370

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
            E+I  MP EP AA+W +LLGACR H     GE +G  LLE+EP+N              
Sbjct: 371 FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASA 430

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            R +DV  +R+LM E+ +   PG S I+++  IH F   D SHP+ +E++L +++++ K 
Sbjct: 431 GRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKF 490

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           K  GY P+ S VL+D+DEE+KE     HSEKLA+AFG I+T  G  +RVIKNLR+C DCH
Sbjct: 491 KESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCH 550

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  K +SKV+ R + +RD+ R+HH   G CSC D+W
Sbjct: 551 NFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 176/373 (47%), Gaps = 45/373 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA ++K+ +    Y+S  L+  +  ++      A  VF+ + + NV  W +++    
Sbjct: 30  QRVHAHMIKTCYLPPVYLSTRLIILY--TKCECLGCARHVFDEMRERNVVSWTAMISGYS 87

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + L+ +M+  D++PN+FT+ TV  +C+     + G Q+H+H+ K      + 
Sbjct: 88  QRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIF 147

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           V SS + MYA  G +++AR + +   + DV+   A+I GY + G  E A ELF    +  
Sbjct: 148 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG 207

Query: 226 KDKNTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                   N++I  +++ G    AR
Sbjct: 208 MSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYAR 267

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           K+FN M  +  I+W+A++ GY+K G   E +++F  M + +K+KP       VL+ C+  
Sbjct: 268 KIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHG 327

Query: 310 GALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WN 366
           G  D+G+ + D +      ++A +     ++D+  + GR++ A+++ + M  +     W 
Sbjct: 328 GLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWG 387

Query: 367 AMIGGLAMHGRAD 379
           +++G   +H   +
Sbjct: 388 SLLGACRVHSNTN 400


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/650 (35%), Positives = 366/650 (56%), Gaps = 69/650 (10%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFEL 85
           +  S   ++ +L+ KC  S   L+Q HA ++K+      + VS  +  C  +      + 
Sbjct: 2   TAISTNPVVSVLD-KC-KSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDY 59

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV--DSKPNKFTYPTVFKAC 143
           A  VF+ +  PN F++ ++++   + + P   + LY+ M+     S   +F+ P+V KAC
Sbjct: 60  ASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKAC 119

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
               A  EG QVH  V+K  L  D  V +S ++MY  FG                     
Sbjct: 120 GKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFG--------------------- 158

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
                     +IE A+ +F    +++  S+N+MI+G+ + G  E A +LF+EM ++D ++
Sbjct: 159 ----------EIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVS 208

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
            +A+IDGY K            EM    ++P    +  VL+A A LG +++G W+H +V 
Sbjct: 209 CNAMIDGYGK------------EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 256

Query: 324 RNSICVDA-VLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDA 381
            N I + +  +G+AL+DMY+KCG ++ A+ VF  +   + +  WN+MI GLA+HG A +A
Sbjct: 257 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 316

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +++F +M+R  + P+ ITF  +LS C+H G+++ G      M + Y I P ++HYGC++D
Sbjct: 317 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 376

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-- 499
           L GRAG L +A  VI +MP E +   W+A+L A  KHG +E G+      +E+ P +   
Sbjct: 377 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 436

Query: 500 ------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG---DGSHPQV 544
                       R DDVAK+R +M++RG+K   G S + VNG +HEF  G   D S+   
Sbjct: 437 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYS-- 494

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
            ++   + +++ +LK++GY P+ +QVL DI++E KE+    HSEK+AIAFG I+ +  A 
Sbjct: 495 GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAP 554

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I ++KNLRVC DCH   KL+SKV+ R II+RD+ R+HHF NG CSCN++W
Sbjct: 555 IHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/660 (35%), Positives = 359/660 (54%), Gaps = 57/660 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA+++++G+ +D + +  LV  +  S+  +  +A  VF  V K +V  WN+ +  C+
Sbjct: 222 RKVHAMVVRTGYDKDVFTANALVDMY--SKLGDIHMAALVFGKVPKTDVVSWNAFISGCV 279

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV--QVHAHVVKNGLCGD 167
            H      + L  +M      PN FT  ++ KAC+   A    +  Q+H  ++K     D
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSD 339

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----K 223
            ++  + + MYA +G ++ AR++ +   + D++ WNALI G    G    +  LF    K
Sbjct: 340 DYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRK 399

Query: 224 STKD----------KNTGSY-------------------------NAMISGFARFGRFEE 248
              D          K+T S                          N +I  + +      
Sbjct: 400 EGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRY 459

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A K+F E +  + I ++++I   ++  + ++A+++F EM R  ++P  FVLS +L ACAS
Sbjct: 460 ANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACAS 519

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L A +QG  +H H+ +     D   G ALV  YAKCG ++ A   F  +  K V +W+AM
Sbjct: 520 LSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM 579

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           IGGLA HG    A+++F +M  E++ P+ IT   VL AC HAG++D      + M++M+G
Sbjct: 580 IGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFG 639

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           ID   EHY C++DLLGRAG L +A E+++SMP E NAAVW ALL A R H + E G+   
Sbjct: 640 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAA 699

Query: 489 KILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L  +EP+                  D+VAK+RKLMK+  +K  P  S +++   +H F
Sbjct: 700 EKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTF 759

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHP+ ++IY  L+++ + +   GY PN    L D+D+ EKE    +HSE+LA+AF
Sbjct: 760 IVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAF 819

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+T  GA IRV KNLR+C DCH A K ISK+  R+II+RD  R+HHF +G CSC D+W
Sbjct: 820 ALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 229/503 (45%), Gaps = 51/503 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           + A  +  +EF+   +L     KC        Q HAV + +G   D +V+  LV  +   
Sbjct: 94  MRARGVRCNEFALPIVL-----KCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGG- 147

Query: 79  RFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            F   + A +VF+   +  N   WN ++ A ++++     + L+ EMV    +PN+F + 
Sbjct: 148 -FGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFS 206

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  AC+ +   + G +VHA VV+ G   DV   ++ + MY+  G ++ A  +     K+
Sbjct: 207 CVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKT 266

Query: 198 DVICWNALIDGYLKCGDIEGAKELF----------------------------------- 222
           DV+ WNA I G +  G  + A EL                                    
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQ 326

Query: 223 ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                 K+  D +     A++  +A++G  ++ARK+F  +  KD + W+A+I G +  G 
Sbjct: 327 IHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGC 386

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           + E+L +F  M+++     +  L+ VL + ASL A+     +H   ++     D+ +   
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+D Y KC  L  A KVFE+     +  + +MI  L+     +DAI+LF +M R+ + PD
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
               + +L+ACA     ++G Q   ++ +   +  +V     +V    + G + +A+   
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFM-TDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 457 SSMPMEPNAAVWEALLGACRKHG 479
           S +P +     W A++G   +HG
Sbjct: 566 SGLP-DKGVVSWSAMIGGLAQHG 587



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 197/423 (46%), Gaps = 56/423 (13%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA +LKSG    H     L+  ++  R      A +VF+    P    W+S++ A   + 
Sbjct: 27  HAHLLKSGLL--HAFRNHLLSFYSKCRLPGS--ARRVFDETPDPCHVSWSSLVTAYSNNA 82

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   ++ +  M     + N+F  P V K C+       GVQVHA  V  GL GD+ V +
Sbjct: 83  LPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAG--LGVQVHAVAVSTGLSGDIFVAN 139

Query: 173 SGIQMYACFGCVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAKELF--------- 222
           + + MY  FG V++AR++ D+ ++  + + WN ++  ++K      A ELF         
Sbjct: 140 ALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVR 199

Query: 223 ------------------------------KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                                         ++  DK+  + NA++  +++ G    A  +
Sbjct: 200 PNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALV 259

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F ++   D ++W+A I G    G+ + ALE+  +M+   + P  F LS +L ACA  GA 
Sbjct: 260 FGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAG 319

Query: 313 DQGIWIHDHVKRNSICVDA--VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
              +    H      C D+   +G ALVDMYAK G LD A KVFE +  K++  WNA+I 
Sbjct: 320 AFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALIS 379

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G +  G   +++ LF +M++E    +R T A VL + A        L+A++   Q++ + 
Sbjct: 380 GCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA-------SLEAISDTTQVHALA 432

Query: 431 PEV 433
            ++
Sbjct: 433 EKI 435



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 170/372 (45%), Gaps = 48/372 (12%)

Query: 152 GVQVHAHVVKNGLCGDVHV-KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY- 209
           G  +HAH++K+GL   +H  ++  +  Y+       AR++ D+      + W++L+  Y 
Sbjct: 23  GAHIHAHLLKSGL---LHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYS 79

Query: 210 -------------------LKCGDIEGAKELFKSTKDKNTGSY----------------- 233
                              ++C +      + K   D   G                   
Sbjct: 80  NNALPREALAAFRAMRARGVRCNEF-ALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVA 138

Query: 234 NAMISGFARFGRFEEARKLFNEM-NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           NA+++ +  FG  +EAR++F+E   D++ ++W+ ++  + K+    +A+E+F EM    +
Sbjct: 139 NALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGV 198

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P +F  SCV+ AC     L+ G  +H  V R     D     ALVDMY+K G + MA  
Sbjct: 199 RPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAAL 258

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF  +   +V +WNA I G  +HG    A+EL  +M+   + P+  T + +L ACA AG 
Sbjct: 259 VFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGA 318

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
               L    +   +       ++ G  +VD+  + G L +A +V   +P + +  +W AL
Sbjct: 319 GAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNAL 377

Query: 472 LGACRK---HGE 480
           +  C     HGE
Sbjct: 378 ISGCSHGGCHGE 389



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 9/263 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N ++S +++      AR++F+E  D   ++WS+++  Y+ +   +EAL  F  M+   ++
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
             +F L  VL  CA    L  G+ +H       +  D  +  ALV MY   G +D A +V
Sbjct: 101 CNEFALPIVL-KCAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 354 F-EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           F E  + +   +WN M+     + R  DA+ELF +M    +RP+   F+CV++AC  +  
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           ++ G + +  M    G D +V     +VD+  + G +  A  V   +P + +   W A +
Sbjct: 218 LEAG-RKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFI 275

Query: 473 GACRKHGEVEFGERLGKILLEME 495
             C  HG  +    L   LL+M+
Sbjct: 276 SGCVLHGHDQHALEL---LLQMK 295



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 161/399 (40%), Gaps = 84/399 (21%)

Query: 27  SEFSQKTILDIL-NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV----KCHANSRFS 81
           S+ ++ T+  +L +T    +     Q HA+  K G   D +V   L+    KC+   R++
Sbjct: 402 SDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC-LRYA 460

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N     KVF      N+  + S++ A  + +     I L+ EM+    +P+ F   ++  
Sbjct: 461 N-----KVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLN 515

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+   A ++G QVHAH++K                          R+ +     +DV  
Sbjct: 516 ACASLSAYEQGKQVHAHLIK--------------------------RKFM-----TDVFA 544

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
            NAL+  Y KCG IE A   F    DK   S++AMI G A                    
Sbjct: 545 GNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLA-------------------- 584

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
                      + G+ K AL+VF  M  ++I P    L+ VL AC   G +D+       
Sbjct: 585 -----------QHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSS 633

Query: 322 VKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRA 378
           +K     +D      + ++D+  + G+LD A ++   M  +     W A++    +H   
Sbjct: 634 MK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDP 692

Query: 379 D---DAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           +    A E  F ++ EK      T   + +  A AGM D
Sbjct: 693 ELGKLAAEKLFVLEPEKSG----THVLLANTYASAGMWD 727


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/688 (32%), Positives = 366/688 (53%), Gaps = 63/688 (9%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSR 79
           ++  +EF+  T+L      C  S ++LKQ    H++I+K G+  + ++   LV  ++   
Sbjct: 309 DVKCNEFTLTTVLK----GCANS-KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
            +    A+ VF ++ KP++ VW++++    +  +    I L+  M   D+ PN++T  ++
Sbjct: 364 LA--IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL 421

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
             A + T   + G  +HA V K G   DV V ++ + MY   GCV+   ++ +     D+
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL 481

Query: 200 ICWNALIDGYLKCG-----------------------------------DIEGAKE---- 220
           I WNA + G   CG                                   D+   ++    
Sbjct: 482 ISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH 541

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           + K+  D N     A+I  +A+    E+A   FN ++ +D  TW+ II  Y +    ++A
Sbjct: 542 IIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKA 601

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L  F +MQ++ +KP +F L+  L+ C+SL +L+ G  +H  V ++    D  +G+ALVDM
Sbjct: 602 LNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG ++ A  +FE +  ++   WN +I G A +G+ + A+  F  M  E + PD +TF
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +LSAC+H G+++ G +    M + +GI P V+H  C+VD+LGR G   E E+ I  M 
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
           +  NA +WE +LGA + H  +  GE+    L E++P+                R DDV +
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R LM  +G+K  PG S ++ NG +H F + D SHPQ++EI+L L ++  +L    Y P 
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           +  VL ++ E EK+   ++HSE+LA+ F  I+T     IR+ KNLR+C DCH   K IS 
Sbjct: 902 TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISS 961

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  ++I+VRD  R+HHF+NG CSCNDFW
Sbjct: 962 ITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 216/489 (44%), Gaps = 50/489 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H +I+K     D ++  +LV  +A  R+S +  A  V   +   +V  W ++++  +
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY--ARLVLAKMPDRDVVSWTALIQGLV 189

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   I L+ EM      PN+FT  T  KACS+  A   G Q+HA   K GL  D+ 
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+ + +YA  G +  A ++     + + + WN L++GY + GD+ G  +LF S  + +
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 230 T------------GSYNA---------------------------MISGFARFGRFEEAR 250
                        G  N+                           ++  +++ G   +A 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F  +   D + WSA+I    + G  +E++++F+ M+     P ++ +  +L+A  + G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L  G  IH  V +     D  +  ALV MY K G +    K++E M  +++ +WNA + 
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GL   G  D  + +F+ M  E   P+  TF  +L +C+    +  G Q   ++ +    D
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDD 549

Query: 431 PEVEHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
               ++ C  ++D+  +  YL +A+   + + +  +   W  ++     + +   GE+  
Sbjct: 550 ---NNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKAL 602

Query: 489 KILLEMEPQ 497
               +M+ +
Sbjct: 603 NYFRQMQQE 611



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 184/417 (44%), Gaps = 52/417 (12%)

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFT---------YPTVFKACSITEADKEGVQVHAHVVK 161
           HN P+R    +      D+K N+           Y ++ + C+   +      +H  +VK
Sbjct: 83  HNFPYRFN--FEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVK 140

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           + +  D H+  S + +YA       AR +L      DV+ W ALI G +  G    +  L
Sbjct: 141 DVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYL 200

Query: 222 FKSTKDKN---------TGSY------------------------------NAMISGFAR 242
           F+  +++          TG                                +A++  +A+
Sbjct: 201 FQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK 260

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  E A K+F  M +++++TW+ +++GY + G     L++F  M    +K  +F L+ V
Sbjct: 261 CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA+   L QG  IH  + +     +  +G  LVDMY+KCG    A  VF+ +K  ++
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
             W+A+I  L   G+++++I+LF  M+     P++ T   +LSA  + G +  G Q++  
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHA 439

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
               YG + +V     +V +  + G + +  ++  SM ++ +   W A L      G
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCG 495



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           S +L  CAS  +L     IH  + ++ I  D+ L  +LV++YAKC     A  V   M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +W A+I GL   G A+D+I LF +MQ E + P+  T A  L AC+    +D G Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                ++ G+  ++     +VDL  + G +  A ++   MP E N   W  LL    + G
Sbjct: 236 HAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRG 293

Query: 480 EVEFGERLGKILLEME 495
           +V    +L   ++E++
Sbjct: 294 DVTGVLKLFCSMMELD 309


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/646 (36%), Positives = 344/646 (53%), Gaps = 61/646 (9%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSE 123
           D +V+  L K +     S  + A KVF++V  P+  +WN++L A L  +E    +  ++ 
Sbjct: 148 DTFVASALAKLYF--VLSRVDHARKVFDTVPSPDTVLWNTLL-AGLSGSE---AVESFAR 201

Query: 124 MVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
           MV   S +P+  T  +V  A +       G  VH+   K GL    HV +  I +Y+  G
Sbjct: 202 MVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCG 261

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMI- 237
            V  AR + D   K D++ +NALI GY   G +  +  LF          N+ +  A+I 
Sbjct: 262 DVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIP 321

Query: 238 --------------------SGFA--------------RFGRFEEARKLFNEMNDKDEIT 263
                               SGF               R    E ARK F+ M +K   +
Sbjct: 322 VHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMES 381

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+A+I GY ++G  + A+ +F +M +  ++P    +S  L+ACA LGAL  G W+H  + 
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
              +  +  + TAL+DMYAKCG +  A ++F  M  K V +WNAMI G  +HG+  +A++
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           L+  M    + P   TF  VL AC+H G+++ G +    M   Y I+P +EH  C+VDLL
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLL 561

Query: 444 GRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN---- 498
           GRAG L EA E+IS  P       VW ALLGAC  H + +  +   + L E++P+N    
Sbjct: 562 GRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYY 621

Query: 499 ----------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                     ++  + A +R+  K R +   PG ++I++    H F  GD +HPQ + IY
Sbjct: 622 VLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIY 681

Query: 549 LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
             L+K+  K+   GY P +   L+D++EEEKE   K HSEKLAIAFG ++T+PG  IR+I
Sbjct: 682 SYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRII 741

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KNLRVC DCH+ATK ISKV +R I+VRD  R+HHFR+G CSC D+W
Sbjct: 742 KNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 217/496 (43%), Gaps = 62/496 (12%)

Query: 44  TSWQHLKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           ++ +HL Q  AV L SGH+  D   + +L+  +A+ R     L L++F    +P+ F+ N
Sbjct: 29  STLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHL-LRLFRGFPRPDRFLRN 87

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE---------ADKEGV 153
           ++LR+ L    P  +             P+ F++   F A S+           +     
Sbjct: 88  ALLRS-LPSLRPRLLFPC----------PDSFSF--AFAATSLAALCSRGGGAASSSAAR 134

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            +HA  V  G   D  V S+  ++Y     V+ AR++ D     D + WN L+ G     
Sbjct: 135 ALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSE 194

Query: 214 DIE-----------------------GAKELFKSTKDKNTGSY-------------NAMI 237
            +E                        A E+   T  +   S+               +I
Sbjct: 195 AVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLI 254

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
           S +++ G  E AR LF+ M   D + ++A+I GY+ +G    ++ +F E+    + P   
Sbjct: 255 SLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSS 314

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  ++   +  G       +H  V ++    ++ + TA+  ++ +   ++ A K F+ M
Sbjct: 315 TLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTM 374

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             K + +WNAMI G A +G  + A+ LF +M +  +RP+ IT +  LSACA  G +  G 
Sbjct: 375 PEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG- 433

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           + L  +     ++P V     ++D+  + G ++EA  + ++M  + N   W A++     
Sbjct: 434 KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGL 492

Query: 478 HGEVEFGERLGKILLE 493
           HG+     +L K +L+
Sbjct: 493 HGQGAEALKLYKDMLD 508



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 127/263 (48%), Gaps = 13/263 (4%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  +LKSG   +  VS  +   H   R ++ E A K F+++ +  +  WN+++    ++ 
Sbjct: 336 HGFVLKSGFTANSPVSTAITTLHC--RLNDMESARKAFDTMPEKTMESWNAMISGYAQNG 393

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++L+ +MV ++ +PN  T  +   AC+   A   G  +H  + +  L  +V+V +
Sbjct: 394 LTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMT 453

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----K 228
           + I MYA  G +++AR+I +     +V+ WNA+I GY   G    A +L+K   D     
Sbjct: 454 ALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLP 513

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
            + ++ +++   +  G  EE  K+F  M D   I       + ++D   + G  KEA E+
Sbjct: 514 TSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFEL 573

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
            +E  +  + P   V   +L AC
Sbjct: 574 ISEFPKSAVGPG--VWGALLGAC 594



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 159/372 (42%), Gaps = 46/372 (12%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+   K G  +  +V   L+  +  S+  + E A  +F+ + KP++  +N+++     + 
Sbjct: 235 HSFAEKCGLAEHEHVLTGLISLY--SKCGDVESARCLFDMMEKPDLVAYNALISGYSVNG 292

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++L++E++ +   PN  T   +    S    D     +H  V+K+G   +  V +
Sbjct: 293 MVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVST 352

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST------- 225
           +   ++     +  AR+  D   +  +  WNA+I GY + G  E A  LF+         
Sbjct: 353 AITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRP 412

Query: 226 --------------------------------KDKNTGSYNAMISGFARFGRFEEARKLF 253
                                            + N     A+I  +A+ G   EAR++F
Sbjct: 413 NPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIF 472

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           N M++K+ ++W+A+I GY   G   EAL+++ +M    + P       VL AC+  G ++
Sbjct: 473 NTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVE 532

Query: 314 QGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEV--FTWNAMI 369
           +G W       +   ++  +   T +VD+  + G+L  A+++  +     V    W A++
Sbjct: 533 EG-WKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALL 591

Query: 370 GGLAMHGRADDA 381
           G   +H  +D A
Sbjct: 592 GACMVHKDSDLA 603


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 352/660 (53%), Gaps = 61/660 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H + + +G+  D +V+  L K +   + S  + A KVF++V  P+  +WN++L A L
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYF--KLSRGDDARKVFDTVPSPDTILWNTLL-AGL 190

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             +E    +  +  MV     +P+  T  +  +A +       G  VH + VK GL    
Sbjct: 191 PGSE---ALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----S 224
           HV +  + +Y+  G ++ A+ + D     D++ +NALI GY   G +E + ELFK    S
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 225 TKDKNTGSYNAMISGFARFGR-----------------------------------FEEA 249
               N+ +  A+I  ++ FG                                     E A
Sbjct: 308 GWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESA 367

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R +F+ M +K   +W+A+I GY ++G  + A+ +F  MQ   ++P    +S  L+ACA L
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHL 427

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G W+H  + +  + ++  + TAL+DMYAKCG +  A  +F+ M  K V +WNAMI
Sbjct: 428 GALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMI 487

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  +HG+  +A++L+  M   ++ P   TF  V+ AC+H G++D G +    M   Y I
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRI 547

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGEVEFGERLG 488
            P +EH  C+VDLLGRAG L EA E+IS  P       VW ALLGAC  H   +  +   
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLAS 607

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L E++ +N              +   + A +R+  K R +   PG ++I++    H F
Sbjct: 608 QKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVF 667

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD  HPQ + IY  L+++  K+   GY P +   L+D++EEEKE   K HSEKLAIAF
Sbjct: 668 MAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAF 727

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G ++T+PG  IR+IKNLRVC DCH+ATK ISKV +R I+VRD  R+HHFR+G CSC D+W
Sbjct: 728 GLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 213/490 (43%), Gaps = 52/490 (10%)

Query: 44  TSWQHLKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           ++ +HL Q  AV L SGH+  D   +  L+  +A+ R     L L++F +   P+ F+ N
Sbjct: 31  STPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHL-LRLFRAFPCPDRFLRN 89

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV---QVHAHV 159
           ++LR+         + SL   ++        F +     + S +    +      +H   
Sbjct: 90  ALLRS---------LPSLRPHLLFPSPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLS 140

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG-- 217
           V  G   D  V S+  ++Y      + AR++ D     D I WN L+ G      +E   
Sbjct: 141 VAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEAFV 200

Query: 218 -----------AKELFKSTKDKNTGSYNAM-----------------------ISGFARF 243
                      +  L  S +     S+ AM                       +S +++ 
Sbjct: 201 RMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKC 260

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  + A+ LF+ M++ D + ++A+I GY+ +G  + ++E+F E+     +P    L  V+
Sbjct: 261 GDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVI 320

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
              +  G       +H  V +  +  DA++ TAL  +Y +   ++ A  +F+ M  K + 
Sbjct: 321 PVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTME 380

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WNAMI G A +G  + A+ LF  MQ   ++P+ IT +  LSACAH G +  G + +  +
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRI 439

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
                ++  V     ++D+  + G +AEA  +   M    N   W A++     HG+   
Sbjct: 440 ISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGYGLHGQGAE 498

Query: 484 GERLGKILLE 493
             +L K +L+
Sbjct: 499 ALKLYKDMLD 508


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/676 (32%), Positives = 365/676 (53%), Gaps = 56/676 (8%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T L IL+   +  + QH K     I ++    D +V   L+  +A  R  + E A +VF 
Sbjct: 263 TFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCR--SPEDAAQVFG 320

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + N+  W++++ A  +H      +  +  M      PN+ T+ ++    +     +E
Sbjct: 321 RMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE 380

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
             ++H  + ++GL     ++++ + +Y      + AR + D     ++I WN++I  Y++
Sbjct: 381 LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQ 440

Query: 212 CGDIEGAKELFKSTKDK----------------NTGSY---------------------- 233
           C   + A +LF++ + +                  GS+                      
Sbjct: 441 CERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLV 500

Query: 234 -NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
             ++++ +A+ G  + A  +  EM+++    W+ +I+GY   G  +EALE + ++Q + I
Sbjct: 501 QTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAI 560

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
              K     VL AC S  +L +G  IH +     +  D ++  AL +MY+KCG ++ A +
Sbjct: 561 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARR 620

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           +F+ M ++   +WN M+   A HG +++ ++L  KM++E ++ + ITF  VLS+C+HAG+
Sbjct: 621 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 680

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           I  G Q    +    GI+ + EHYGC+VDLLGRAG L EAE+ IS MP+EP    W +LL
Sbjct: 681 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740

Query: 473 GACRKHGEVEFGERLGKILLEMEPQN------------RRCD--DVAKMRKLMKERGIKT 518
           GACR   +++ G+     LLE++P N             R D  + AK+R+ M  R +K 
Sbjct: 741 GACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKK 800

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PG S I V   +HEFR  D SHP+  EIY  ++++   ++  GY P++  VL D+DEE+
Sbjct: 801 VPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQ 860

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KE+   YHSEKLAIAFG I+T   +++ + KNLRVCEDCH+ATK ISK+  R+I+VRD  
Sbjct: 861 KESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNH 920

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHFR+G CSC D+W
Sbjct: 921 RFHHFRDGSCSCKDYW 936



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 231/514 (44%), Gaps = 56/514 (10%)

Query: 33  TILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           T++ +LN+ C  S++ L+     HA+ L+ G FQ+  V+  L+  +   +      A  V
Sbjct: 60  TLVAVLNS-C-GSFRELRDGILVHALSLERGFFQNTLVATALLNMYG--KCGTLLDAQSV 115

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRV-ISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           F  + + NV  WN++L         W++ + L++ M+    K N  T+  V  +    +A
Sbjct: 116 FEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            ++G  +H+ V ++    DV V ++ +  Y   G +  AR++ D      V  WN++I  
Sbjct: 176 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISA 235

Query: 209 YL---KCGDI---------EGAK---------------------------ELFKSTKDKN 229
           Y    + G+          EG +                            + +++ + +
Sbjct: 236 YSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELD 295

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                A+I+ +AR    E+A ++F  M   + ITWSAII  +   G+  EAL  F  MQ+
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ 355

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
           + I P +     +L    +   L++   IH  +  + +     +  ALV++Y +C   D 
Sbjct: 356 EGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDD 415

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC-- 407
           A  VF+ +++  + +WN+MIG      R DDA++LF  MQ++ ++PDR+ F  +L AC  
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTI 475

Query: 408 -AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
            +H     R L      +   G  P V+    +V++  +AG L  AE ++  M  E    
Sbjct: 476 GSHGR--TRKLVHQCVEESGLGGSPLVQ--TSLVNMYAKAGELDVAEVILQEMD-EQQIT 530

Query: 467 VWEALLGACRKHGEV-EFGERLGKILLEMEPQNR 499
            W  L+     HG   E  E   K+ LE  P ++
Sbjct: 531 AWNVLINGYALHGRSREALEAYQKLQLEAIPVDK 564



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 195/478 (40%), Gaps = 92/478 (19%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR  +   A+  F  +   NV  WN ++ A   +      ++L+  M+     PN  T  
Sbjct: 3   SRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLV 62

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
            V  +                      CG       GI ++A           L+ G   
Sbjct: 63  AVLNS----------------------CGSFRELRDGILVHALS---------LERGFFQ 91

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           + +   AL++ Y KCG +                                +A+ +F EM 
Sbjct: 92  NTLVATALLNMYGKCGTLL-------------------------------DAQSVFEEMA 120

Query: 258 DKDEITWSAIIDGYTKDGY-YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
           +K+ +TW+A++  Y+  G  +K A+E+F  M  + +K        VL +     AL +G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           +IH  V+ +   +D  + TALV+ Y KCG L  A KVF+ M  + V TWN+MI   ++  
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEH 435
           R+ +A  +F +MQ+E  R DR+TF  +L AC +   +  G      + +  + +D  V  
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG- 299

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
              ++ +  R     +A +V   M  + N   W A++ A   HG                
Sbjct: 300 -TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGH--------------- 342

Query: 496 PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                C +  +  ++M++ GI  N  + +  +NG    F T  G   ++  I+L++ +
Sbjct: 343 -----CGEALRYFRMMQQEGILPNRVTFISLLNG----FTTPSGLE-ELSRIHLLITE 390



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 24/281 (8%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           ++R G   +A   F ++  ++ ++W+ +I  Y+    ++EAL +F+ M  + + P    L
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL +C S   L  GI +H          + ++ TAL++MY KCG L  A  VFE+M  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 360 KEVFTWNAMIGGLAMHGRA-DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K V TWNAM+G  ++ G     A+ELF +M  E ++ + ITF  VL++      + +G  
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG-- 179

Query: 419 ALTYMQQMYGIDPEVEHY------GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
                + ++    E EH         +V+   + G L +A +V   MP   +   W +++
Sbjct: 180 -----KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMI 233

Query: 473 GA---CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
            A     + GE  F      I   M+ +  RCD V  +  L
Sbjct: 234 SAYSISERSGEAFF------IFQRMQQEGERCDRVTFLSIL 268



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY++CG L  A   F  ++ + V +WN MI   + +    +A+ LF  M  E + P+ IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 400 FACVLSACA-----------HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              VL++C            HA  ++RG    T +               ++++ G+ G 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVAT------------ALLNMYGKCGT 108

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           L +A+ V   M  E N   W A+LG     G
Sbjct: 109 LLDAQSVFEEMA-EKNVVTWNAMLGVYSLQG 138


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/658 (32%), Positives = 353/658 (53%), Gaps = 55/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H+ +LK+G   D+ + G+L+  +  S   + E AL++F+S  + NV +WN +L A  
Sbjct: 264 KQLHSYLLKAGMSLDYIMEGSLLDLYVKS--GDIEEALQIFDSGDRTNVVLWNLMLVAYG 321

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + ++  +   ++  M+    +PNKFTYP + + C+ T     G Q+H+  +KNG   D++
Sbjct: 322 QIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMY 381

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           V    I MY+ +G ++KA++ILD   + DV+ W ++I GY++                  
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 212 --------------CGDIEGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                         C  I+   +       ++ S    +   +N ++  +AR G  +EA 
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             F  +  K+ ITW+ +I G+ + G Y+EAL+VF +M +   K   F     ++A A+L 
Sbjct: 502 SSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLA 561

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            + QG  IH  V +     +  +  AL+ +Y KCG ++ A   F +M  +   +WN +I 
Sbjct: 562 DIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIIT 621

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
             + HGR  +A++LF +M+++ ++P  +TF  VL+AC+H G+++ GL     M   +GI 
Sbjct: 622 CCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIH 681

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P  +HY C+VD+LGRAG L  A+  +  MP+  ++ VW  LL AC+ H  +E GE   K 
Sbjct: 682 PRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKH 741

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           LLE+EP +               +     ++RK+MK+RG++  PG S I+V  V+H F  
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFV 801

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD  HP   +IY  L  + ++L   GY   +  +  + ++E K+     HSEKLA+AFG 
Sbjct: 802 GDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGL 861

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++      +RVIKNLRVC DCH+  K  S V  R+I++RD  R+HHF NG CSC D+W
Sbjct: 862 MSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 228/491 (46%), Gaps = 46/491 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  + K G F + +V   L+  +   R  +F LA +VF  +   +   +N+++    +  
Sbjct: 166 HVQVYKQGFFSETFVGNALISLYLRCR--SFRLADRVFCDMLYCDSVTFNTLISGHAQCG 223

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
              R + ++ EM      P+  T  ++  ACS     ++G Q+H++++K G+  D  ++ 
Sbjct: 224 HGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEG 283

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE---------------- 216
           S + +Y   G + +A QI D G +++V+ WN ++  Y +  D+                 
Sbjct: 284 SLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRP 343

Query: 217 ------------------GAKELFKSTKDKNTGSYNAMISG-----FARFGRFEEARKLF 253
                             G  E   S   KN    +  +SG     ++++G  ++A+++ 
Sbjct: 344 NKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL 403

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + + +KD ++W+++I GY +  + KEALE F EMQ   I P    L+  ++ACA + A+ 
Sbjct: 404 DMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVH 463

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           QG  IH  V  +    D  +   LV +YA+CG    A+  FE ++ KE  TWN +I G A
Sbjct: 464 QGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFA 523

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
             G  ++A+++F KM +   + +  TF   +SA A+   I +G Q    + +  G   E 
Sbjct: 524 QSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT-GYTSET 582

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           E    ++ L G+ G + +A+     M  + N   W  ++  C +HG    G     +  +
Sbjct: 583 EISNALISLYGKCGSIEDAKMDFFEMT-KRNEVSWNTIITCCSQHGR---GLEALDLFDQ 638

Query: 494 MEPQNRRCDDV 504
           M+ Q  +  DV
Sbjct: 639 MKQQGLKPSDV 649



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 200/491 (40%), Gaps = 50/491 (10%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  + + HA  +  G      +   L+  +A   F     A +VF  +   +   W +VL
Sbjct: 58  WPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGF--VRRARRVFEELSVRDNVSWVAVL 115

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               ++      + LY EM      P  +   ++  AC+ TE  + G  +H  V K G  
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFF 175

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            +  V ++ I +Y        A ++  D    D + +N LI G+ +CG  + A  +F   
Sbjct: 176 SETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM 235

Query: 226 --------------------------KDKNTGSY-------------NAMISGFARFGRF 246
                                     K K   SY              +++  + + G  
Sbjct: 236 QLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDI 295

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EEA ++F+  +  + + W+ ++  Y +     ++ ++F  M    ++P KF   C+L  C
Sbjct: 296 EEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTC 355

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G +  G  IH    +N    D  +   L+DMY+K G LD A ++ + ++ K+V +W 
Sbjct: 356 THTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWT 415

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQ 424
           +MI G   H    +A+E F +MQ   + PD I  A  +SACA    + +G Q  A  Y+ 
Sbjct: 416 SMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS 475

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
              G   +V  +  +V L  R G   EA     ++        W  L+    + G  E  
Sbjct: 476 ---GYSADVSIWNGLVYLYARCGISKEAFSSFEAIE-HKEGITWNGLISGFAQSGLYE-- 529

Query: 485 ERLGKILLEME 495
           E L K+ ++M+
Sbjct: 530 EAL-KVFMKMD 539



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 170/381 (44%), Gaps = 44/381 (11%)

Query: 37  ILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           +L T  HT    L +Q H++ +K+G   D YVSG L+  +  S++   + A ++ + + +
Sbjct: 351 MLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMY--SKYGWLDKAQRILDMIEE 408

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
            +V  W S++   ++H      +  + EM      P+     +   AC+  +A  +G Q+
Sbjct: 409 KDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQI 468

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           HA V  +G   DV + +  + +YA  G   +A    +     + I WN LI G+ + G  
Sbjct: 469 HARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLY 528

Query: 216 EGAKELF---------------------------------------KSTKDKNTGSYNAM 236
           E A ++F                                       K+     T   NA+
Sbjct: 529 EEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNAL 588

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           IS + + G  E+A+  F EM  ++E++W+ II   ++ G   EAL++F++M++  +KP  
Sbjct: 589 ISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSD 648

Query: 297 FVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
                VL AC+ +G +++G+ +       + I         +VD+  + G+LD A +  E
Sbjct: 649 VTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVE 708

Query: 356 DMKM-KEVFTWNAMIGGLAMH 375
           +M +  +   W  ++    +H
Sbjct: 709 EMPIPADSMVWRTLLSACKVH 729



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           ++G  L+D+YAK G +  A +VFE++ +++  +W A++ G A +G  ++A+ L+ +M R 
Sbjct: 78  IIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRS 137

Query: 392 KMRPDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            + P     + +LSAC    +   G  +    Y Q   G   E      ++ L  R    
Sbjct: 138 GVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQ---GFFSETFVGNALISLYLRCRSF 194

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
             A+ V   M +  ++  +  L+     H +   G+R   I  EM+      D V
Sbjct: 195 RLADRVFCDM-LYCDSVTFNTLISG---HAQCGHGDRALGIFDEMQLSGLSPDSV 245


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/669 (33%), Positives = 357/669 (53%), Gaps = 79/669 (11%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           M T V   +  HHL P +    +       QK    +   K   S +  KQ H  ILK G
Sbjct: 2   MGTSVLNYN--HHLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFG 59

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
            F D + S +++   A S +++ + A  +F  + +P  F +N+++R  + +      I L
Sbjct: 60  LFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYL 119

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y++M+  + +P+ FTYP V KAC+     +EG+Q+H HV K GL  DV+V+         
Sbjct: 120 YNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQ--------- 170

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
                                 N+LI+ Y KC DIE +  +F+                 
Sbjct: 171 ----------------------NSLINMYGKCRDIEMSCAIFR----------------- 191

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVL 299
                          M  K   +WSAII  +     + E L +F +M R+   +  + +L
Sbjct: 192 --------------RMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESIL 237

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL+AC  LGA   G   H  + +N   ++  + T+L+DMY KCG L     +F++M  
Sbjct: 238 VNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTR 297

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K   +++ +I GL +HG    A+++F +M  E + PD +T+  VLSAC+H+G++D GL  
Sbjct: 298 KNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDL 357

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M+  Y I+P ++HYGC+VDL GRAG L EA +++ SMP++ N  +W +LL AC+ H 
Sbjct: 358 FDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHD 417

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            ++ GE   + L  +   N              ++ ++ AK+R  M  RG+   PG S++
Sbjct: 418 NLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLV 477

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           +V   +++F + D S+ +   IY M+ ++  +L+ EGY P++SQV+ D+DEEEK    K 
Sbjct: 478 EVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKG 537

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HS+KLAIAF  I+T  G+ IR+I+NLR+C DCHS TKL+S +++R+I VRDR R+HHF++
Sbjct: 538 HSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKD 597

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 598 GNCSCRDYW 606


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 324/561 (57%), Gaps = 64/561 (11%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK------ARQILDDGSKSDVICWNALID 207
           Q+HA  +++G    V  ++     +  F  V+       A QI +     ++  WN +I 
Sbjct: 53  QIHAFSIRHG----VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIR 108

Query: 208 GYLKCGDIEGAKELFKST-------KDKNTGSY--------------------------- 233
           G+ +  +   A ELF           D +T  +                           
Sbjct: 109 GFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFD 168

Query: 234 ------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                 N+++  ++ FG  E A ++F  M+ +D + W+++I+G+  +G   EAL ++ EM
Sbjct: 169 SLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM 228

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
             + ++P  F +  +L+AC  LGAL  G  +H ++ +  +  +     AL+D+Y+KCG  
Sbjct: 229 GSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNF 288

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A KVF++M+ + V +W ++I GLA++G  ++A++LF +++R+ ++P  ITF  VL AC
Sbjct: 289 RDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYAC 348

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H GM+D G      M++ YGI P +EH+GC+VDLL RAG + +A + I +MP+ PNA +
Sbjct: 349 SHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVI 408

Query: 468 WEALLGACRKHGEVEFGE-------RLGK-------ILLEMEPQNRRCDDVAKMRKLMKE 513
           W  LLGAC  HG +E GE       RL +       +L  +    RR  DV  +RK+M  
Sbjct: 409 WRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLM 468

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           +G+K  PG S++++   ++EF  GD SHPQ +E Y ML KI + LK+EGY P +  VL D
Sbjct: 469 KGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLAD 528

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           I+EEEKETA  +H+EK+AIAF  +NT PG  IR++KNLRVC DCH A KLISKVF+R+II
Sbjct: 529 IEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREII 588

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRDR R+HHF++G CSC D+W
Sbjct: 589 VRDRSRFHHFKDGSCSCKDYW 609



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 174/386 (45%), Gaps = 54/386 (13%)

Query: 42  CHTSWQHLKQAHAVILKSG------HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           C +S   LKQ HA  ++ G       F  H +   LV   A   F     A ++FN +  
Sbjct: 44  CGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFA-LVSLSAPMSF-----AAQIFNQIQA 97

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQ 154
           PN+F WN+++R   E   P   + L+S+M    S  P+  T+P +FKA +       G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +H+ VV+NG      V++S + MY+ FG    A Q+ +  S  D + WN++I+G+   G 
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 215 IEGAKELFKSTKD---------------------------------------KNTGSYNA 235
              A  L++                                           +N  + NA
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  +++ G F +A+K+F+EM ++  ++W+++I G   +G   EAL++F E++R  +KP 
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPS 337

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVF 354
           +     VL AC+  G LD+G      +K     +  +     +VD+  + G++  A+   
Sbjct: 338 EITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYI 397

Query: 355 EDMKM-KEVFTWNAMIGGLAMHGRAD 379
            +M +      W  ++G   +HG  +
Sbjct: 398 RNMPVPPNAVIWRTLLGACTIHGHLE 423


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 362/701 (51%), Gaps = 93/701 (13%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +S    ++ H  +  SG      ++  LV  +A  RF +   A ++F S+   +   WN+
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           V+ A  +  +    + ++ EM   D KPN  TY  V    S  E   EG ++HA +V NG
Sbjct: 179 VILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL-- 221
              D+ V ++ I MY   G  ++AR++ D   K D++ WN +I  Y+  GD   A EL  
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 222 ------FKSTK-------------------------------DKNTGSYNAMISGFARFG 244
                 FK TK                               D       A+++ +A+ G
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE------------------------- 279
             EEARK+FN M ++D + WS +I  Y  +GY K+                         
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITT 417

Query: 280 ---------ALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
                    A+++F EM     +KP       VL ACASLG L +   +H  +  + +  
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELES 477

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           + V+   L++MYA+CG L+ A ++F   K K V +W AM+   + +GR  +A++LF +M 
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMD 537

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            E ++PD +T+  +L  C H G +++G +  T M +++ + P  +H+  +VDLLGR+G L
Sbjct: 538 LEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRL 597

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------- 500
            +A+E++ SMP EP+   W   L ACR HG++E GE   + + E++P +           
Sbjct: 598 FDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIY 657

Query: 501 -----CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
                 + VA +RK M+ERG+K  PG S I+V+G +HEF +G   HP+  EI   L ++ 
Sbjct: 658 AAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLH 717

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT-DPGATIRVIKNLRVC 614
             ++  GY P++  VL D+ E EKET   YHSEK+AIAFG +++   G  IRV+KNLRVC
Sbjct: 718 GLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVC 777

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHF-RNGKCSCNDFW 654
            DCH+ATK I+++  RDIIVRD  R+H F  +GKCSC D+W
Sbjct: 778 SDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 222/494 (44%), Gaps = 83/494 (16%)

Query: 86  ALKVFNSV--HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           A  VF S+   + NV  WN+++ A  ++      + LY  M       +  T+ +V  AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           S   +  +G ++H  V  +GL     + ++ + MYA FG V  A+++       D   WN
Sbjct: 121 S---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWN 177

Query: 204 ALIDGYLKCGDIEGAKELFKSTK---DKNTGSYNAMISGFA------------------- 241
           A+I  + + GD  GA  +FK  K     N+ +Y  +ISGF+                   
Sbjct: 178 AVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 242 ----------------RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                           + G   EAR++F++M  +D ++W+ +I  Y  +G + EALE++ 
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           ++  +  K  K     +L AC+S+ AL QG  +H H+    +  +  + TALV+MYAKCG
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD------------------------- 380
            L+ A KVF  MK ++   W+ +IG  A +G   D                         
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITT 417

Query: 381 ---------AIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
                    A+++F +M     ++PD +TF  VL ACA  G +   ++AL        ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELE 476

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
             V     ++++  R G L EAE + ++   E     W A++ A  ++G   + E L  +
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYG--RYAEAL-DL 532

Query: 491 LLEMEPQNRRCDDV 504
             EM+ +  + DDV
Sbjct: 533 FQEMDLEGVKPDDV 546



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 189/391 (48%), Gaps = 41/391 (10%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +D +P+  T+ TV  +CS      EG  +H  +  +    D  V ++ I MY     +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 187 ARQILD--DGSKSDVICWNALIDGYLK--------------------------------C 212
           AR + +  D  + +V+ WNA+I  Y +                                C
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 213 GDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
             +   +E+    F S  D      NA+++ +ARFG   +A+++F  +  +DE +W+A+I
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             +++ G +  AL +F EM+ D +KP       V++  ++   L +G  IH  +  N   
Sbjct: 181 LAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            D V+ TAL++MY KCG    A +VF+ MK +++ +WN MIG   ++G   +A+EL+ K+
Sbjct: 240 TDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKL 299

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             E  +  + TF  +L AC+    + +G    +++ +  G+D EV     +V++  + G 
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGS 358

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           L EA +V ++M    +A  W  L+GA   +G
Sbjct: 359 LEEARKVFNAMK-NRDAVAWSTLIGAYASNG 388



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P       VL +C+S G + +G  +H+ ++ +    D ++G AL+ MY KC  L  A  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 353 VFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           VFE M  + + V +WNAMI   A +G + +A+ L+++M  + +  D +TF  VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
               R +    +     G+D        +V +  R G + +A+ +  S+      + W A
Sbjct: 124 AQ-GREIHNRVFYS---GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS-WNA 178

Query: 471 LLGACRKHGEVEFGERLGK 489
           ++ A  + G+     R+ K
Sbjct: 179 VILAHSQSGDWSGALRIFK 197


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 340/619 (54%), Gaps = 79/619 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ILK G   D +    L+  +  S F     A K+F+ + + N   + ++++   
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E       I L+  +   +  PN+FT+ +V +AC+  E    G Q+H HV+K GL     
Sbjct: 116 ESVRFLEAIELFVRL-HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGL----- 169

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                                      SDV   NAL+D Y KC                 
Sbjct: 170 --------------------------HSDVFVSNALMDVYAKC----------------- 186

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                         GR E + +LF E   ++++TW+ +I G+ + G  ++AL +F  M  
Sbjct: 187 --------------GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLE 232

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
            +++  +   S  L ACASL AL+ G+ IH    + +   D V+  AL+DMYAKCG +  
Sbjct: 233 YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKD 292

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A  VF+ M  ++  +WNAMI G +MHG   +A+ +F KMQ  +++PD++TF  VLSACA+
Sbjct: 293 ARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN 352

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           AG++D+G    T M Q +GI+P +EHY C+V LLGR G+L +A ++I  +P +P+  VW 
Sbjct: 353 AGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWR 412

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERG 515
           ALLGAC  H ++E G    + +LEMEPQ+              +R D+VA +RK MK +G
Sbjct: 413 ALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKG 472

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           +K  PG S I+  G +H F  GD SHP+V+ I  ML+ +  K K  GY PN + VL D++
Sbjct: 473 VKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVE 532

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           +EEKE     HSE+LA++FG I T  G+ IR++KNLR+C DCH+A K ISKV +R+I+VR
Sbjct: 533 DEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVR 592

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D  R+HHF+ G CSC D+W
Sbjct: 593 DINRFHHFQEGLCSCGDYW 611



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKF---VLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           +++ G+  ++ ++  E     + P +F     +  L  C       +G  +H  + +   
Sbjct: 11  FSRRGFSVQSAKLTQEFV-GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGG 69

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
           C+D      L++MY K   L  A K+F++M  +   ++  +I G A   R  +AIELF +
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           + RE + P++ TFA VL ACA    ++ G Q   ++ ++ G+  +V     ++D+  + G
Sbjct: 130 LHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKI-GLHSDVFVSNALMDVYAKCG 187

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            +  + E+ +  P   N   W  ++    + G+ E   RL   +LE   Q
Sbjct: 188 RMENSMELFAESP-HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQ 236


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/682 (34%), Positives = 356/682 (52%), Gaps = 80/682 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H    + GH++    +  +       R  + +  L +F      ++  WNS++ +  
Sbjct: 136 KQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFED---RDLVTWNSMISSFS 192

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK-NGLCGDV 168
           ++      +     MV    KP+  T+ +V  ACS  +  + G ++HA+ ++ + +  + 
Sbjct: 193 QNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS 252

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
            V S+ + MY   G V   R + D      +  WNA+I GY +    E A  LF      
Sbjct: 253 FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAA 312

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K   + N    NA+I  ++R G  + 
Sbjct: 313 AGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKT 372

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK----------------I 292
           ++++F+ M D+D ++W+ II  Y   G   +AL + +EMQR +                 
Sbjct: 373 SKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPF 432

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           KP    L  VL  CASL AL +G  IH +  RN +     +G+ALVDMYAKCG L++A +
Sbjct: 433 KPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARR 492

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-----KMRPDRITFACVLSAC 407
           VF+ M ++ V TWN +I    MHG+  +++ELF  M  E     +++P  +TF  + ++C
Sbjct: 493 VFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASC 552

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-PNAA 466
           +H+GM+D GL     M+  +GI+P  +HY CIVDL+GRAG + EA  ++++MP       
Sbjct: 553 SHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVG 612

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMK 512
            W +LLGACR +  +E GE   + LL+++P                   D    +R+ MK
Sbjct: 613 AWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMK 672

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
             G+K  PG S I+    +H+F  GD SHPQ ++++  L+ + E+LK EGY P+++ VL 
Sbjct: 673 AMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLH 732

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           DIDEEEKET    HSEKLAIAFG +NT PG TIRV KNLRVC DCH+A+K ISK+  R+I
Sbjct: 733 DIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREI 792

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           I+RD  R+HHF++G CSC D+W
Sbjct: 793 ILRDARRFHHFKDGTCSCGDYW 814



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 219/494 (44%), Gaps = 69/494 (13%)

Query: 50  KQAHAVILKSGH--FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           KQ HA + K G+  F    +  TLV  +   +      A KVF+ + + +   WNS++ A
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYG--KCGGLGDAYKVFDRITERDQVSWNSIISA 87

Query: 108 CLEHNEPWRV-ISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADK--EGVQVHAHVVKNG 163
            L   E W V I  +  M+    +P+ FT  ++  ACS + + D    G Q+H    + G
Sbjct: 88  -LCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG 146

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------YLK 211
                   ++ + MYA  G ++ A+ +L      D++ WN++I              +L+
Sbjct: 147 HW-RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLR 205

Query: 212 CGDIEGAK----------------ELFKSTKD------------KNTGSYNAMISGFARF 243
              +EG K                +L ++ K+            +N+   +A++  +   
Sbjct: 206 LMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNC 265

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCV 302
           G+ E  R +F+ + D+    W+A+I GY +  + ++AL +F EM+    +      +S +
Sbjct: 266 GQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSI 325

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           + A      + +   IH +V +  +  +  L  AL+DMY++ G +  + ++F+ M+ +++
Sbjct: 326 VPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDI 385

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQR--EK--------------MRPDRITFACVLSA 406
            +WN +I    + GR+ DA+ L  +MQR  EK               +P+ IT   VL  
Sbjct: 386 VSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPG 445

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           CA    + +G +   Y  +   +  +V     +VD+  + G L  A  V   MP+  N  
Sbjct: 446 CASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVI 503

Query: 467 VWEALLGACRKHGE 480
            W  ++ A   HG+
Sbjct: 504 TWNVIIMAYGMHGK 517



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 184/439 (41%), Gaps = 93/439 (21%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+G    P+ F +P V KA +  +    G Q+HAHV K G                    
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGY------------------- 41

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                     GS S V   N L++ Y KCG +                            
Sbjct: 42  ----------GSFSSVTIDNTLVNMYGKCGGLG--------------------------- 64

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
               +A K+F+ + ++D+++W++II    +   ++ A++ F  M  +  +P  F L  + 
Sbjct: 65  ----DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 304 AACASLGALDQGIWIHDHVKRNSICVD-----AVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            AC++L   D G+W+   +  +  C            AL+ MYAK GRLD A  +    +
Sbjct: 121 LACSNLRKRD-GLWLGKQI--HGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFE 177

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            +++ TWN+MI   + + R  +A+     M  E ++PD +TFA VL AC+H  ++  G +
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
              Y  +   +         +VD+    G +     V  S+ ++    +W A++     +
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV-LDRKIGLWNAMIAG---Y 293

Query: 479 GEVEFGERLGKILLEME----------------PQNRRCDDVAK---MRKLMKERGIKTN 519
            + E  E+   + +EME                P   RC+ +++   +   + +RG++TN
Sbjct: 294 AQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETN 353

Query: 520 P--GSSMIDVNGVIHEFRT 536
               +++ID+   + + +T
Sbjct: 354 RYLQNALIDMYSRMGDIKT 372


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/567 (37%), Positives = 315/567 (55%), Gaps = 76/567 (13%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           NS++R  L+ N+    + +++ M      P+  T+P V KA +       G  +H  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   DV+  +                               AL+  Y  C  I      
Sbjct: 118 MGFICDVYTST-------------------------------ALVHLYCTCLSIS----- 141

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                     +A +LF+EM +++ +TW+A+I GYT +  + +A+
Sbjct: 142 --------------------------DASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           + F  M  D  +P +  +  VL+AC+ LGA +QG WIH+ +  N + ++  +GTAL+DMY
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +    KVFE+++ K V+TWN +I G AM+G+ D A++ F +M  E  +PD +TF 
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL AC H G++  G      M+Q +G+ P +EHYGC+VDLLGRAG L EA E+I SM +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EP+  +W ALL ACR HG  + GE + K L+E+EP N              RR  +V K+
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R +M  RGI+  PG S I++N V++EF   +   P+ + IY  L  +I+KLK  GY   +
Sbjct: 416 RGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L+DI++EEKE +  YHSEKLA+AFG +N+    T+R++KNLR+C DCH   K++S V
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +KR I+VRDR R+HHF  G CSC D+W
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 14/278 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H ++++ G   D Y S  LV  H      +   A ++F+ + + N   WN+++    
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALV--HLYCTCLSISDASQLFDEMPERNAVTWNALITGYT 166

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +  + I  +  M+   ++P++ T   V  ACS   A  +G  +H  +  N L  +V 
Sbjct: 167 HNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF 226

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I MYA  G V +  ++ ++  + +V  WN LI GY   G  + A + F     +N
Sbjct: 227 VGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286

Query: 230 TG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
                 ++  ++      G   E R  F  M  +  +      +  ++D   + G  +EA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           LE+   M    I+P   +   +L AC   G    G +I
Sbjct: 347 LELIQSMS---IEPDPIIWRALLCACRVHGNTKLGEYI 381



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 10/263 (3%)

Query: 246 FEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           FE   ++F++     +    +++I  Y     +  +L +F  M +  I P       VL 
Sbjct: 38  FESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLK 97

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           A A L     G  IH  V +     D    TALV +Y  C  +  A ++F++M  +   T
Sbjct: 98  ATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVT 157

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG--LQALTY 422
           WNA+I G   + +   AI+ F  M  +  +P   T   VLSAC+H G  ++G  +    Y
Sbjct: 158 WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIY 217

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             ++      V     ++D+  + G + E E+V   +  E N   W  L+     +G+  
Sbjct: 218 HNRL---RLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQ-- 271

Query: 483 FGERLGKILLEMEPQNRRCDDVA 505
            G+   +    M  +N + D+V 
Sbjct: 272 -GDAALQAFSRMLMENFKPDEVT 293


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 308/540 (57%), Gaps = 51/540 (9%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P +E +Q      L  +C ++ + L Q H  +LK G  ++     TL+  +A     N  
Sbjct: 8   PNTEQTQA-----LLERC-SNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLA 61

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
               VF+S+  PN  +WN++LRA    N+P   + LY +M+      N +T+P + KACS
Sbjct: 62  YTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACS 121

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A +E  Q+HAH++K G          G+++YA                       N+
Sbjct: 122 ALSAFEETQQIHAHIIKRGF---------GLEVYAT----------------------NS 150

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+  Y   G+I+ A  LF     ++  S+N MI G+ +FG  + A K+F  M +K+ I+W
Sbjct: 151 LLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISW 210

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +I G+ + G +KEAL +  +M    IKP    LSC L+ACA LGAL+QG WIH ++++
Sbjct: 211 TTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEK 270

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N I +D VLG  L DMY KCG ++ A  VF  ++ K V  W A+IGGLA+HG+  +A++ 
Sbjct: 271 NEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDW 330

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +MQ+  + P+ ITF  +L+AC+HAG+ + G      M  +Y I P +EHYGC+VDL+G
Sbjct: 331 FTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMG 390

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           RAG L EA E I SMP++PNAA+W ALL AC+ H   E G+ +GKIL+E++P +      
Sbjct: 391 RAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIH 450

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
                      + V ++R  +K RG+  +PG S I +NGV+HEF  GDGSHP ++EIY M
Sbjct: 451 LASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSHPHIQEIYGM 510


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/567 (37%), Positives = 315/567 (55%), Gaps = 76/567 (13%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           NS++R  L+ N+    + +++ M      P+  T+P V KA +       G  +H  V++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   DV+  +                               AL+  Y  C  I      
Sbjct: 118 MGFICDVYTST-------------------------------ALVHLYCTCLSIS----- 141

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                     +A +LF+EM +++ +TW+A+I GYT +  + +A+
Sbjct: 142 --------------------------DASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           + F  M  D  +P +  +  VL+AC+ LGA +QG WIH+ +  N + ++  +GTAL+DMY
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +    KVFE+++ K V+TWN +I G AM+G+ D A++ F +M  E  +PD +TF 
Sbjct: 236 AKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFL 295

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL AC H G++  G      M+Q +G+ P +EHYGC+VDLLGRAG L EA E+I SM +
Sbjct: 296 GVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           EP+  +W ALL ACR HG  + GE + K L+E+EP N              RR  +V K+
Sbjct: 356 EPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKL 415

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R +M  RGI+  PG S I++N V++EF   +   P+ + IY  L  +I+KLK  GY   +
Sbjct: 416 RGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGT 475

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
              L+DI++EEKE +  YHSEKLA+AFG +N+    T+R++KNLR+C DCH   K++S V
Sbjct: 476 DMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLV 535

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +KR I+VRDR R+HHF  G CSC D+W
Sbjct: 536 YKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 14/278 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H ++++ G   D Y S  LV  H      +   A ++F+ + + N   WN+++    
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALV--HLYCTCLSISDASQLFDEMPERNAVTWNALITGYT 166

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +  + I  +  M+   ++P++ T   V  ACS   A  +G  +H  +  N L  +V 
Sbjct: 167 HNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF 226

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I MYA  G V +  ++ ++  + +V  WN LI GY   G  + A + F     +N
Sbjct: 227 VGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286

Query: 230 TG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
                 ++  ++      G   E R  F  M  +  +      +  ++D   + G  +EA
Sbjct: 287 FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEA 346

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           LE+   M    I+P   +   +L AC   G    G +I
Sbjct: 347 LELIQSMS---IEPDPIIWRALLCACRVHGNTKLGEYI 381



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 10/263 (3%)

Query: 246 FEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           FE   ++F++     +    +++I  Y     +  +L +F  M +  I P       VL 
Sbjct: 38  FESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLK 97

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           A A L     G  IH  V +     D    TALV +Y  C  +  A ++F++M  +   T
Sbjct: 98  ATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVT 157

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG--LQALTY 422
           WNA+I G   + +   AI+ F  M  +  +P   T   VLSAC+H G  ++G  +    Y
Sbjct: 158 WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIY 217

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             ++      V     ++D+  + G + E E+V   +  E N   W  L+     +G+  
Sbjct: 218 HNRL---RLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNGQ-- 271

Query: 483 FGERLGKILLEMEPQNRRCDDVA 505
            G+   +    M  +N + D+V 
Sbjct: 272 -GDAALQAFSRMLMENFKPDEVT 293


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 342/628 (54%), Gaps = 58/628 (9%)

Query: 82  NFELALKVFNSVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
           + E A ++F  +  + +V  WN+++ A  +       I LY +M   D +P+  T+ +V 
Sbjct: 172 SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVL 228

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
            ACS      +G ++HA +   G   D+ ++++ + MYA   C++ A +I     + DV+
Sbjct: 229 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 288

Query: 201 CWNALIDGYLKCGDIEGAKELFK----------------------STKDKNTG------- 231
            W+A+I  + +    + A E +                       S  D   G       
Sbjct: 289 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 348

Query: 232 ----------SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                     +  A++  +  +G  +EAR LF+++ ++DE  W+ +I GY+K G+    L
Sbjct: 349 LGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVL 408

Query: 282 EVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           E++ EM+   K+   K + SCV++ACASLGA       H  ++ + +  D VL T+LV+M
Sbjct: 409 ELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNM 468

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y++ G L+ A +VF+ M  ++   W  +I G A HG    A+ L+ +M+ E   P  +TF
Sbjct: 469 YSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTF 528

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             VL AC+HAG+ ++G Q    +Q  Y + P + HY CI+DLL RAG L++AEE+I++MP
Sbjct: 529 MVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMP 588

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
           +EPN   W +LLGA R H +V+        + +++P +                   +A 
Sbjct: 589 VEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMAS 648

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R  M  RG+K   GSS I+V   IHEF  GD SHP+ +EI+  L+++  K+K  GY P 
Sbjct: 649 VRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPE 708

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           S +VL D+ E+EKE   + HSEKLAIAFG I T PG T+R+   LR+C DCHSA K IS 
Sbjct: 709 SEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISA 768

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + +R+IIVRD  R+H FR+G+CSC D+W
Sbjct: 769 IARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 206/430 (47%), Gaps = 44/430 (10%)

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F+++ + N + W S+L A  ++      + LY  M   D +PN   Y TV  AC+  EA 
Sbjct: 81  FDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEAL 137

Query: 150 KEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALID 207
           +EG  +H+ +    GL  DV +++S + MYA  G +  A+++ +  S +  V  WNA+I 
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIA 197

Query: 208 GYLKCGDIEGAKELFKST------------------------------------KDKNTG 231
            Y + G  E A  L++                                       + +  
Sbjct: 198 AYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLS 257

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
             NA+++ +AR    ++A K+F  +  +D ++WSA+I  + +   + EA+E +++MQ + 
Sbjct: 258 LQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG 317

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P  +  + VL ACAS+G L  G  +HD +  N   +  V GTALVD+Y   G LD A 
Sbjct: 318 VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEAR 377

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHA 410
            +F+ ++ ++   W  +IGG +  G     +EL+ +M+     P  +I ++CV+SACA  
Sbjct: 378 SLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASL 437

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G      QA + ++   G+  +      +V++  R G L  A +V   M      A W  
Sbjct: 438 GAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA-WTT 495

Query: 471 LLGACRKHGE 480
           L+    KHGE
Sbjct: 496 LIAGYAKHGE 505



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 186/401 (46%), Gaps = 52/401 (12%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y    + C   E+ +   Q+H  +       +V + +  ++ Y   G V  AR   D  +
Sbjct: 30  YRDALRQCQDLESVR---QIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIA 85

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF----------------------------KSTKD 227
           + +   W +++  Y + G    A +L+                            K+   
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIHS 145

Query: 228 KNTGSY---------NAMISGFARFGRFEEARKLFNEMNDKDEI-TWSAIIDGYTKDGYY 277
           + +G+          N++++ +A+ G  E+A++LF  M+ +  + +W+A+I  Y + G++
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF 205

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EA+ ++ +M    ++P     + VL+AC++LG LDQG  IH  +      +D  L  AL
Sbjct: 206 EEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNAL 262

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYA+C  LD A K+F+ +  ++V +W+AMI   A     D+AIE + KMQ E +RP+ 
Sbjct: 263 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNY 322

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            TFA VL ACA  G +  G +A+       G    + +   +VDL    G L EA  +  
Sbjct: 323 YTFASVLLACASVGDLRAG-RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD 381

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
            +    +  +W  L+G   K      G R G + L  E +N
Sbjct: 382 QIE-NRDEGLWTVLIGGYSKQ-----GHRTGVLELYREMKN 416



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 172/368 (46%), Gaps = 44/368 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA+I   G   D  +   L+  +A  R    + A K+F  + + +V  W++++ A  
Sbjct: 241 RKIHALISSRGTELDLSLQNALLTMYA--RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFA 298

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E +     I  YS+M     +PN +T+ +V  AC+     + G  VH  ++ NG    + 
Sbjct: 299 ETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLV 358

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
             ++ + +Y  +G +++AR + D     D   W  LI GY K G   G  EL++  K+  
Sbjct: 359 NGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTT 418

Query: 229 -----------------NTGSY------------NAMISGF----------ARFGRFEEA 249
                            + G++            + MIS F          +R+G  E A
Sbjct: 419 KVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESA 478

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R++F++M+ +D + W+ +I GY K G +  AL ++ EM+ +  +P +     VL AC+  
Sbjct: 479 RQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 538

Query: 310 GALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G  +QG  +   ++ + ++  +    + ++D+ ++ GRL  A ++   M ++    TW++
Sbjct: 539 GLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSS 598

Query: 368 MIGGLAMH 375
           ++G   +H
Sbjct: 599 LLGASRIH 606



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 48/308 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +  H  IL +G ++   V+GT LV  + +  + + + A  +F+ +   +  +W  ++   
Sbjct: 342 RAVHDQILGNG-YKITLVNGTALVDLYTS--YGSLDEARSLFDQIENRDEGLWTVLIGGY 398

Query: 109 LEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            +      V+ LY EM      P  K  Y  V  AC+   A  +  Q H+ +  +G+  D
Sbjct: 399 SKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD 458

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------DI 215
             + +S + MY+ +G +  ARQ+ D  S  D + W  LI GY K G            ++
Sbjct: 459 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMEL 518

Query: 216 EGA-----------------------KELFKSTKD-----KNTGSYNAMISGFARFGRFE 247
           EGA                       K+LF S +       N   Y+ +I   +R GR  
Sbjct: 519 EGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLS 578

Query: 248 EARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFV-LSCVLA 304
           +A +L N M  + +++TWS+++         K A     ++ + D + P  +V LS V A
Sbjct: 579 DAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHA 638

Query: 305 ACASLGAL 312
              +L  +
Sbjct: 639 VTGNLAGM 646


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/662 (34%), Positives = 352/662 (53%), Gaps = 60/662 (9%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV--HKPNVFVWNSVLR 106
           L   HA IL  G   D YVS  L+  H  ++  +   A  +FNS+     ++  WN+++ 
Sbjct: 128 LIHTHAHIL--GLSMDLYVSTALL--HMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIA 183

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A   H    + I   ++M      PN  T  ++        A  +G  +HA+ ++N    
Sbjct: 184 AFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFD 243

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---- 222
           +V ++++ + MYA    +  AR+I +  +K + +CW+A+I GY+    I  A  L+    
Sbjct: 244 NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDML 303

Query: 223 ------------------------------------KSTKDKNTGSYNAMISGFARFGRF 246
                                               KS  D +T   N++IS +A+ G  
Sbjct: 304 CIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIM 363

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           + A    +EM  KD +++SAII G  ++GY ++AL +F +MQ   I P    +  +L AC
Sbjct: 364 DNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPAC 423

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           + L AL  G   H +        D  +  A++DMY+KCG++ ++ ++F+ M+ +++ +WN
Sbjct: 424 SHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWN 483

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            MI G  +HG   +A+ LF ++Q   ++PD +T   VLSAC+H+G++  G    + M Q 
Sbjct: 484 TMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQN 543

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + I P + HY C+VDLL RAG L EA   I  MP  PN  +W ALL ACR H  +E GE+
Sbjct: 544 FNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQ 603

Query: 487 LGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
           + K +  + P+                R DD A +R + +  G K +PG S ++++GVIH
Sbjct: 604 VSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIH 663

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F  G  SHPQ   I   L++++ ++K  GY  +SS VL D++EEEKE    YHSEK+AI
Sbjct: 664 VFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAI 723

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG +NT P + I V KNLR+C DCHSA K I+ + +R+I VRD  R+HHF++G C+C D
Sbjct: 724 AFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQD 783

Query: 653 FW 654
           FW
Sbjct: 784 FW 785



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 47/447 (10%)

Query: 59  SGHFQDHYVSGTLVKCHANSRF----SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP 114
           S H   H VS +       +R+    +  +LA  VF+ + KP+V +WN ++R        
Sbjct: 29  SPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPF 88

Query: 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174
            + I LY  M+ +   P  FT+P + KACS  +A + G  +H H    GL  D++V ++ 
Sbjct: 89  QQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTAL 148

Query: 175 IQMYACFGCVNKARQILDDGSKS--DVICWNALIDGY----LKCGDIEGAKELFKSTKDK 228
           + MYA  G + +A+ + +  S    D++ WNA+I  +    L    I    ++ ++    
Sbjct: 149 LHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTP 208

Query: 229 NT----------GSYNAMISG-------------------------FARFGRFEEARKLF 253
           N+          G  NA+  G                         +A+      ARK+F
Sbjct: 209 NSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF 268

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGAL 312
           N +N K+++ WSA+I GY       +AL ++++M     + P    L+ +L ACA L  L
Sbjct: 269 NTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDL 328

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
            +G  +H H+ ++ + +D  +G +L+ MYAKCG +D A    ++M  K+  +++A+I G 
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGC 388

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
             +G A+ A+ +F +MQ   + P   T   +L AC+H   +  G     Y   + G   +
Sbjct: 389 VQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGY-TVVRGFTND 447

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSM 459
                 I+D+  + G +  + E+   M
Sbjct: 448 TSICNAIIDMYSKCGKITISREIFDRM 474



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 8/255 (3%)

Query: 234 NAMISGFARF----GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
           +A  +  AR+       + AR +F+++     + W+ +I  Y   G +++++ ++  M +
Sbjct: 41  DAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQ 100

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             + P  F    +L AC+SL AL  G  IH H     + +D  + TAL+ MYAKCG L  
Sbjct: 101 LGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQ 160

Query: 350 AWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           A  +F  +    +++  WNAMI   + H      I    +MQ+  + P+  T   +L   
Sbjct: 161 AQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTI 220

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
             A  + +G     Y  + +  D  V     ++D+  +   L  A ++ +++  + N   
Sbjct: 221 GQANALHQGKAIHAYYIRNFFFDNVVLQTA-LLDMYAKCHLLFYARKIFNTVN-KKNDVC 278

Query: 468 WEALLGACRKHGEVE 482
           W A++G    H  + 
Sbjct: 279 WSAMIGGYVLHDSIS 293


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/682 (34%), Positives = 368/682 (53%), Gaps = 58/682 (8%)

Query: 28  EFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           E  Q T + +L T        L +Q H + LK G      VS +L+  +   R   F  A
Sbjct: 312 ECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR--KFGFA 369

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-I 145
             VF+++ + ++  WNSV+    ++      + L+ +++    KP+++T  +V KA S +
Sbjct: 370 RTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            E      QVH H +K     D  V ++ I  Y+   C+ +A +IL +    D++ WNA+
Sbjct: 430 PEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVAWNAM 488

Query: 206 IDGYLKCGDIEGAKELF---------------------------------------KSTK 226
           + GY +  D     +LF                                       KS  
Sbjct: 489 MAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D +    + ++  + + G    A+  F+ +   D++ W+ +I G  ++G  + A  VF++
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+   + P +F ++ +  A + L AL+QG  IH +  + +   D  +GT+LVDMYAKCG 
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D A+ +F+ ++M  +  WNAM+ GLA HG   + ++LF +M+   ++PD++TF  VLSA
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H+G++    + +  M   YGI PE+EHY C+ D LGRAG + +AE +I SM ME +A+
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMK 512
           ++  LL ACR  G+ E G+R+   LLE+EP +               + D++   R +MK
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 848

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
              +K +PG S I+V   IH F   D S+ Q + IY  +K +I  +K EGY P +   L 
Sbjct: 849 GHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLV 908

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEEKE A  YHSEKLA+AFG ++T P   IRVIKNLRVC DCH+A K I+KV+ R+I
Sbjct: 909 DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREI 968

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           ++RD  R+H F++G CSC D+W
Sbjct: 969 VLRDANRFHRFKDGICSCGDYW 990



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 201/473 (42%), Gaps = 33/473 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA IL      + ++   L+  +  S+  +   A +VF+ +   ++  WNS+L A  
Sbjct: 59  KCTHARILTFEENPERFLINNLISMY--SKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 110 EHNE-----PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + +E       +   L+  +       ++ T   + K C  +         H +  K GL
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
            GD  V  + + +Y  FG V + + + ++    DV+ WN ++  YL+ G  E A +L  +
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236

Query: 225 TKDKNTGSYNAMISGFARF-GRFEEARKLFNEMNDKDEITWSAII------DGYTKDGYY 277
                       +   AR  G   +A ++ +  N  D  + S II        Y   G Y
Sbjct: 237 FHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQY 296

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
              L+ F +M    ++  +     +LA    + +L  G  +H    +  + +   +  +L
Sbjct: 297 SALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSL 356

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           ++MY K  +   A  VF++M  +++ +WN++I G+A +G   +A+ LF ++ R  ++PD+
Sbjct: 357 INMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQ 416

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGI------DPEVEHYGCIVDLLGRAGYLAE 451
            T   VL A   A  +  GL +L+    ++ I      D  V     ++D   R   + E
Sbjct: 417 YTMTSVLKA---ASSLPEGL-SLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCMKE 470

Query: 452 AEEVISSMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
           AE +      +  A  W A++ G  + H     G +  K+   M  Q  R DD
Sbjct: 471 AEILFERHNFDLVA--WNAMMAGYTQSHD----GHKTLKLFALMHKQGERSDD 517


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 334/638 (52%), Gaps = 82/638 (12%)

Query: 35  LDILNTKCHT-SWQHLKQAHAVILKSGHFQDHY--VSGTLVKCHANSRFSNFELALKVFN 91
           LD   +KC T S  H KQ HA +  +G F+         L++ +A S   N   A+  F+
Sbjct: 5   LDSFLSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALS-LGNLSFAILTFS 63

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +  P+   WN+++R  ++   P    + Y  M+    K +  T   V KAC+   A  E
Sbjct: 64  QIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLE 123

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
            +Q+H H+V+ G                                 +D +    L+D Y K
Sbjct: 124 SIQIHTHIVRKGFI-------------------------------ADALLGTTLLDVYAK 152

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
            G+I+ A+                               K+F+EM  +D  +W+A+I G+
Sbjct: 153 VGEIDSAE-------------------------------KVFDEMVKRDIASWNALISGF 181

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            +     EAL +F  M+ D  KP +  +   L+ACA LG   +G  IH ++K     ++A
Sbjct: 182 AQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNA 241

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +   ++DMYAKCG +D A+ VFE M   K++ TWN MI   AMHG    A+ELF KM +
Sbjct: 242 QVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQ 301

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             + PD +++  VL AC H G+++ G +    M+   G+ P V+HYG +VDLLGRAG L 
Sbjct: 302 SGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLH 360

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------ 498
           EA ++++SMP  P+  +W+ LLGA R H  VE  E + + L+EM   +            
Sbjct: 361 EAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYA 420

Query: 499 --RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R  DV ++R+ MK R +K  PG S I+ NGVIH+F   D SH   +EIY  L +I  
Sbjct: 421 ARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRF 480

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GY   +S VL DI EE+KE    +HSEKLA+AFG I+T  G  I+VIKNLR+C D
Sbjct: 481 RVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGD 540

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KLISK++ R+IIVRDRVR+H F+ G CSC D+W
Sbjct: 541 CHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/641 (36%), Positives = 349/641 (54%), Gaps = 98/641 (15%)

Query: 44  TSWQHLKQAHAVILKSGH-FQDH--YVSGTLVKC--HANSRFSNFELALKVFNSVHKPNV 98
           TS + L Q HAV +K+G   Q H  +V+  L  C        ++   A +VF+ +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 99  FVW-NSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
            VW N++LR          C E  E  RV   +  M+     P+ +T+ ++ KAC+   A
Sbjct: 99  VVWYNTLLRGYARGGWGGGCAE--EAARV---FVRMMEEGVAPDTYTFVSLLKACASARA 153

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            +EG Q H   VK G     +V  +                               LI+ 
Sbjct: 154 GEEGRQAHGVAVKAGAAEHEYVAPT-------------------------------LINM 182

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
           Y +CGD+  A                               R +F+ M+ +  ++++A+I
Sbjct: 183 YAECGDVRAA-------------------------------RVMFDRMDGECVVSYNAMI 211

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
               +     EAL +F EMQ   +KP    L  VL+ACA LGAL+ G WIHD++++  + 
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLD 271

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
               + TAL+DMYAKCG L+ A  VF+DM+ ++   W+ M+   A HG   +AI +F +M
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEM 331

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
           +++ M+PD +TF  VL AC+H+GM+  GLQ    M++ YGI   ++HYGC+ DLL R+G 
Sbjct: 332 KKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQ 390

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME------------- 495
           L  A + I  +P++P A +W  LL AC  HG+V+ G+R+ + +LE++             
Sbjct: 391 LERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNL 450

Query: 496 -PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                R +++  +RKLM E+G+   PG S I+++ ++HEF  GDGSHP  +E   M+ ++
Sbjct: 451 CANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEV 510

Query: 555 IEKLKMEGYSPNSSQVL-FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           IE+LK+ GY PN+S V   ++ EEEK T+ +YHSEKLAI+FG +NT PG T+R++KNLRV
Sbjct: 511 IEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRV 570

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCHS  KL+S VF R II+RD  R+HHF +G CSC D+W
Sbjct: 571 CPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 316/564 (56%), Gaps = 67/564 (11%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +D +P+  +   V  AC+   A   G  VH   V++G                       
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSG----------------------- 43

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
                   S  D+   NAL+D Y KCG ++ A ++F   K+K+  S+NAM++G+++ GRF
Sbjct: 44  --------SFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRF 95

Query: 247 EEARKLFNEMNDKD----EITWSAIIDGYTKDGYYKEALEVFNEMQRDK----------- 291
           E+A  LF +M +++     ++WSA+I  + + G   E L+VF EMQ  +           
Sbjct: 96  EDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWM 155

Query: 292 ------IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKC 344
                 +KP  F +SC L ACA L AL  G  IH ++ RN        +   L+DMYAK 
Sbjct: 156 FKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKS 215

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D+A  VF+++K K   +W +++ G  MHGR  +A+E+F +M+R  ++PD +T   VL
Sbjct: 216 GDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVL 275

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            AC+H+GMID+G++    M + +G+ P  EHY C+VDLLGRAG L EA E+I  M MEP+
Sbjct: 276 YACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPS 335

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           + VW ALL  CR H  VE GE   K LLE+  +N              RR  DVA++R L
Sbjct: 336 SIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSL 395

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MK  GI+  PG S +        F   D +HPQ K+IY +L+ + +++K+ GY P +S  
Sbjct: 396 MKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFA 455

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D+D+EEK      HSEKLA+A+G + + PGA IR+ KNLRVC DCH+A   IS +   
Sbjct: 456 LHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDH 515

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +II+RD  R+HHF+ G CSC+ +W
Sbjct: 516 EIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 136/322 (42%), Gaps = 63/322 (19%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN--------------------------- 77
           +W H K  H + ++SG F+D +V   LV  +A                            
Sbjct: 28  AWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVN 87

Query: 78  --SRFSNFELALKVFNSVHKP----NVFVWNSVLRAC---------------LEHNEPWR 116
             S+   FE AL +F  + +     NV  W++V+ A                ++H E   
Sbjct: 88  GYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEAND 147

Query: 117 VISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL-CGDVHVKSS 173
            + L+S M   D   KPN FT      AC+   A + G Q+HA++++N      ++V + 
Sbjct: 148 ALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANC 207

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKN 229
            I MYA  G ++ AR + D+  + + + W +L+ GY   G  + A E+F   +      +
Sbjct: 208 LIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPD 267

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVF 284
             +   ++   +  G  ++  + FN M+ +  +      ++ ++D   + G   EA+E+ 
Sbjct: 268 GVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELI 327

Query: 285 NEMQRDKIKPRKFVLSCVLAAC 306
             MQ   ++P   V   +L+ C
Sbjct: 328 EGMQ---MEPSSIVWVALLSGC 346



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 24/223 (10%)

Query: 50  KQAHAVILKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           +Q HA IL++ HF     YV+  L+  +A S   + ++A  VF+++ + N   W S++  
Sbjct: 186 RQIHAYILRN-HFDSAFLYVANCLIDMYAKS--GDIDVARFVFDNLKQKNFVSWTSLMTG 242

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              H      + ++ EM  V  +P+  T   V  ACS +    +G++       N +  +
Sbjct: 243 YGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFF-----NSMSKE 297

Query: 168 VHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIE--- 216
             V   G + YAC        G +N+A ++++    +   I W AL+ G     ++E   
Sbjct: 298 FGV-IPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGE 356

Query: 217 -GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
             AK+L +    +N GSY  + + +A   R+++  ++ + M +
Sbjct: 357 HAAKQLLE-LNSENDGSYTLLSNIYANARRWKDVARVRSLMKN 398


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/624 (34%), Positives = 333/624 (53%), Gaps = 65/624 (10%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           K  N++  P    WN+ LR   +  +  + +SLY +M+    +PN FT+P   K+C+   
Sbjct: 8   KSMNALSTP----WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALS 63

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNAL 205
               G Q H  + K G   +  V++  I MY     V+ AR++ ++   S+   +C+NAL
Sbjct: 64  LPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNAL 123

Query: 206 IDGYLKCGDIEGAKELFKSTK--------------------------------------- 226
           + GY+       A  LF+                                          
Sbjct: 124 VSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 183

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D +    N  I+ + + G    A+KLF+EM  K  I+W+A++ GY ++G     LE++  
Sbjct: 184 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 243

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M  + + P    L  VL++CA+LGA   G  +   ++ +    +  L  AL++MYA+CG 
Sbjct: 244 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGN 303

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           L  A  VF+ M  + + +W A+IGG  MHG  + A++LF +M R  + PD   F CVLSA
Sbjct: 304 LTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSA 363

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG+ D+GL+    M++ Y ++P  EHY C+VDLLGRAG L EA+ +I SMP++P+ A
Sbjct: 364 CSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGA 423

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMK 512
           VW ALLGAC+ H  VE  E   + ++E+EP+N                   V ++R +MK
Sbjct: 424 VWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMK 483

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           E+ +K +PG S +++ G +H F  GD +H Q  EIY +L+++   +  E   P       
Sbjct: 484 EKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD---- 539

Query: 573 DIDEEEKE--TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           + +E  K+  T    HSEKLA+AFG +NT  GA + +IKNLR+CEDCH   K++SK+  R
Sbjct: 540 NREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHR 599

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            + VRD  R+HHFRNG CSC D+W
Sbjct: 600 QLTVRDATRFHHFRNGSCSCKDYW 623



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LK G   D  V    +  +      N+  A K+F+ +    +  WN+++    ++ 
Sbjct: 175 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNY--AQKLFDEMPVKGLISWNAMVSGYAQNG 232

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
               V+ LY  M      P+  T   V  +C+   A   G +V   +  +G   +  + +
Sbjct: 233 LATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN 292

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKDK 228
           + I MYA  G + KA+ + D   +  ++ W A+I GY   G  E A +LFK    S  + 
Sbjct: 293 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 352

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
           +  ++  ++S  +  G  ++  + F  M    ++      +S ++D   + G  KEA  +
Sbjct: 353 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 412

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
              M    IKP   V   +L AC
Sbjct: 413 IESM---PIKPDGAVWGALLGAC 432


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 340/585 (58%), Gaps = 19/585 (3%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+++   +   +N+V+     +      + ++  M     KP ++T+ +V  AC+    
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            + G Q+H  ++   L G+V V ++   +YA  G +++AR++ D     +V+ WN +I G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 209 YLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           YLK    E   +LF   +  N      + ++++  + + G  +EARK+F E+ +KDE+ W
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +I G  ++G  ++AL +F+EM  +  +P  + +S V+++CA L +L  G  +H     
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
             +  D ++ +ALVDMY KCG    AW +F  M+ + V +WN+MIGG A++G+  +A+ L
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSL 410

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           +  M  E ++PD +TF  VLSAC HAG+++ G +    M   +G++P  +HY C+V+L G
Sbjct: 411 YENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFG 470

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           R+G++ +A ++ISSM  EPN+ +W  +L  C   G+++ GE   + L+E+ P N      
Sbjct: 471 RSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIM 530

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
                    R  DVA +R LMK + +K     S I+++  +H+F   D +HP  K I++ 
Sbjct: 531 LSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQ 590

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT-IRVIK 609
           L ++I KL+  G+SPN++ VL D  E+EK  +  YHSEKLA+A+G I    G T IR+IK
Sbjct: 591 LNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIK 650

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           N+R C DCH   K +S + +R +I+RD  R+HHF  GKCSC D+W
Sbjct: 651 NIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 158/297 (53%), Gaps = 13/297 (4%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           +D    N L++ Y K G+I  A++LF     ++  S+NAM+S +A+ G  E+ R +F+ M
Sbjct: 56  NDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNM 115

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +D ++++ +I G+  +G    AL VF  MQ++ +KP ++    VL AC  L  L +G 
Sbjct: 116 PSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGK 175

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  +   ++  +  +  AL D+YA+CG +D A ++F+ M ++ V TWN MI G   + 
Sbjct: 176 QIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNR 235

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           + +  I+LF +MQ   ++PD++T + VL A   AG ID   +    +++   +   +   
Sbjct: 236 QPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIV 295

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPME---PNAAVWEALLGACRK-----HGEVEFGE 485
           GC      + G   +A  + S M +E   P+     +++ +C K     HG+V  G+
Sbjct: 296 GC-----AQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGK 347



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 15/292 (5%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF  + + +   W  ++  C ++ +    + L+SEM+  +++P+ +T  +V  +C+ 
Sbjct: 275 ARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAK 334

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             +   G  VH      G+  D+ V S+ + MY   G    A  I       +V+ WN++
Sbjct: 335 LASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSM 394

Query: 206 IDGYLKCGDIEGAKELFKSTKDKN----TGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           I GY   G    A  L+++  ++N    + ++  ++S     G  EE ++ F  M+D+  
Sbjct: 395 IGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHG 454

Query: 262 IT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG- 315
           +      ++ +++ + + G+  +A+++ + M ++   P   + + VL+ C   G +  G 
Sbjct: 455 LEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQE---PNSLIWTTVLSVCVMKGDIKHGE 511

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +     ++ N    +AV    L +MYA  GR      +   MK K V  ++A
Sbjct: 512 MAARCLIELNPF--NAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSA 561


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/621 (33%), Positives = 347/621 (55%), Gaps = 66/621 (10%)

Query: 49  LKQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           + +AH ++ +    + D  +  TLV  +  S  +  + A ++F+ +++ ++  W +++  
Sbjct: 285 MDEAHGLLSRCDESEVDVVLWTTLVSGYVKS--NKIDKARQLFDKMNERSLVSWTTMMSG 342

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            ++       + L+ +M   +  P++    TV  AC   E    G  VHA +V  G+   
Sbjct: 343 YVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGM--- 399

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                                  L DG        NAL+D Y KCG ++ A   F+    
Sbjct: 400 -----------------------LVDG-----FLGNALLDLYAKCGKLDEALRTFEQLPC 431

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           K+  S+N+M+ GF R G  ++AR  FN++ +KD ++W+ +++ Y K   + E+ E+F +M
Sbjct: 432 KSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM 491

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q   +KP K  L  +L++CA +GAL+ GIW++ ++++N I +DA+LGTAL+DMY KCG +
Sbjct: 492 QSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCV 551

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           +MA+++F  +  K VF W AM+   AM G+A +AI+L+ +M+   ++PD +TF  +L+AC
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H G++D G +    ++  Y I P + HYGC+VDLLGR G+L E  + I  MP+EP+ ++
Sbjct: 612 SHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSI 671

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W +L+ ACR H  VE  E+  K L+E++P N               R DDV+K+R  + E
Sbjct: 672 WSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHE 731

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
            G+   PG +MI+ NGV+HEF     S+    +I  ML+ I  +L               
Sbjct: 732 TGVPKQPGFTMIEQNGVVHEFV---ASNLVSADILCMLQDIERRL--------------- 773

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           + ++E       HSE+LA+AFG IN    + IRV+ ++R+C DCHS  KLIS+ + R+I+
Sbjct: 774 LVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIV 833

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           +RD  R+H F +G CSC D+W
Sbjct: 834 IRDNYRFHRFTDGHCSCKDYW 854



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 228/489 (46%), Gaps = 73/489 (14%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H  ILK G  ++  ++  L+  +  S+    +   ++F  +   +V  WN+++   + 
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGLY--SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVL 211

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                  + L+ EM+     P++ T  ++   C+  +  + G ++H ++V N L     +
Sbjct: 212 KGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL 271

Query: 171 KSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +  + MY+  G +++A  +L   D S+ DV+ W  L+                      
Sbjct: 272 LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLV---------------------- 309

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                    SG+ +  + ++AR+LF++MN++  ++W+ ++ GY + GYY E+LE+F +M+
Sbjct: 310 ---------SGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + + P +  L  VL+AC  L   D G  +H  +    + VD  LG AL+D+YAKCG+LD
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA--------------------------- 381
            A + FE +  K   +WN+M+ G    G  D A                           
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDL 480

Query: 382 ----IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHY 436
                E+F KMQ   ++PD+ T   +LS+CA  G ++ G+    Y+++   GID  +   
Sbjct: 481 FNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG-- 538

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
             ++D+ G+ G +  A E+ + + +E N  VW A++ A    G+         + LEME 
Sbjct: 539 TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEGQ---ALEAIDLYLEMEE 594

Query: 497 QNRRCDDVA 505
           +  + D V 
Sbjct: 595 RGVKPDHVT 603



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 178/414 (42%), Gaps = 78/414 (18%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + K+CS     +E   +HAH++   L  D  + S  +        ++ A QIL    + +
Sbjct: 41  LLKSCSNI---REFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPE 97

Query: 199 VICWNALIDGYLKCG-----------------------------------DIEGAKE--- 220
            I WN L++  LK G                                   D++   E   
Sbjct: 98  SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHG 157

Query: 221 -LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
            + K    +N    N ++  +++ G+ +E  +LF +M  +D I+W+ +I  Y   G Y+E
Sbjct: 158 RILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYRE 217

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL++F+EM    + P +  +  +++ CA L  L+ G  +H ++  N + +   L   LVD
Sbjct: 218 ALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVD 277

Query: 340 MYAKCGRLDMA----------------W-----------------KVFEDMKMKEVFTWN 366
           MY+KCG++D A                W                 ++F+ M  + + +W 
Sbjct: 278 MYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWT 337

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            M+ G    G   +++ELF +M+ E + PD +    VLSAC H    D G     ++   
Sbjct: 338 TMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT- 396

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL-GACRKHG 479
           YG+  +      ++DL  + G L EA      +P + +AA W ++L G CR  G
Sbjct: 397 YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK-SAASWNSMLDGFCRSGG 449



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A ++ +  ++ + I W+ +++   K+G  +E LE +  M    +         ++ AC  
Sbjct: 86  AHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCK 145

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
              +  G  +H  + +     +  L   L+ +Y+KCG+L    ++FE M  ++V +WN M
Sbjct: 146 NFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTM 205

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I    + G   +A++LF +M    + PD IT   ++S CA    ++ G +       +Y 
Sbjct: 206 ISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL-----HLYI 260

Query: 429 IDPEVEHYG----CIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEF 483
           +D ++   G    C+VD+  + G + EA  ++S     E +  +W  L+    K  +++ 
Sbjct: 261 VDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDK 320

Query: 484 GERL 487
             +L
Sbjct: 321 ARQL 324


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 354/639 (55%), Gaps = 49/639 (7%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LK  H+ +      ++  +   L++ +A        LA  VF+ + + NV  +N ++R+ 
Sbjct: 51  LKNVHSKVFNLSFHENPSLGIKLMRAYAAR--GEPGLARNVFDVIPERNVIFYNVMIRSY 108

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + ++     + ++ +MV     P+ +TYP V KACS ++  + G+Q+H  V K GL  ++
Sbjct: 109 MNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNL 168

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK----------CGDIEGA 218
            V +  I +Y   GC+ +AR +LD+    DV+ WN+++ GY +          C +++G 
Sbjct: 169 FVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGV 228

Query: 219 KE---------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
           ++         L  +    NT S N +              ++F  +  K  ++W+ +I 
Sbjct: 229 RQKPDACTMASLLPAVT--NTSSENVLY-----------VEEMFMNLEKKSLVSWNVMIS 275

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
            Y K+    ++++++ +M + +++P     + VL AC  L AL  G  IH++V+R  +C 
Sbjct: 276 VYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCP 335

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           + +L  +L+DMYA+CG L+ A +VF+ MK ++V +W ++I    M G+  +A+ LF +MQ
Sbjct: 336 NMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQ 395

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
                PD I F  +LSAC+H+G+++ G      M   Y I P +EH+ C+VDLLGR+G +
Sbjct: 396 NSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRV 455

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------- 499
            EA  +I  MPM+PN  VW ALL +CR +  ++ G      LL++ P+            
Sbjct: 456 DEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIY 515

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R  +V  +R LMK R I+  PG S +++N  +H F  GD  HPQ KEIY  L  ++
Sbjct: 516 AKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLV 575

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            K+K  GY P +   L D++EE+KE     HSEKLAI F  +NT   + IR+ KNLRVC 
Sbjct: 576 GKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCG 634

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCH A KLISK+ +R+I++RD  R+HHF++G CSC D+W
Sbjct: 635 DCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 332/611 (54%), Gaps = 61/611 (9%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+ LR   +  +  + +SLY +M+    +PN FT+P   K+C+       G Q H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNALIDGYL---KCGD- 214
           K G   +  V++  I MY     V+ AR++ ++   S+   +C+NAL+ GY+   KC D 
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 215 -------------------------------IEGAKELFKSTK----DKNTGSYNAMISG 239
                                          +E    L  ST     D +    N  I+ 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G    A+KLF+EM  K  I+W+A++ GY ++G     LE++  M  + + P    L
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL++CA+LGA   G  +   ++ +    +  L  AL++MYA+CG L  A  VF+ M  
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 307

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           + + +W A+IGG  MHG  + A++LF +M R  + PD   F CVLSAC+HAG+ D+GL+ 
Sbjct: 308 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEY 367

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M++ Y ++P  EHY C+VDLLGRAG L EA+ +I SMP++P+ AVW ALLGAC+ H 
Sbjct: 368 FKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHK 427

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            VE  E   + ++E+EP+N                   V ++R +MKE+ +K +PG S +
Sbjct: 428 NVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 487

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE--TAP 583
           ++ G +H F  GD +H Q  EIY +L+++   +  E   P       + +E  K+  T  
Sbjct: 488 ELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----NREESNKDGFTRV 543

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
             HSEKLA+AFG +NT  GA + +IKNLR+CEDCH   K++SK+  R + VRD  R+HHF
Sbjct: 544 GVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHF 603

Query: 644 RNGKCSCNDFW 654
           RNG CSC D+W
Sbjct: 604 RNGSCSCKDYW 614



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LK G   D  V    +  +      N+  A K+F+ +    +  WN+++    ++ 
Sbjct: 166 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNY--AQKLFDEMPVKGLISWNAMVSGYAQNG 223

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
               V+ LY  M      P+  T   V  +C+   A   G +V   +  +G   +  + +
Sbjct: 224 LATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN 283

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----STKDK 228
           + I MYA  G + KA+ + D   +  ++ W A+I GY   G  E A +LFK    S  + 
Sbjct: 284 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 343

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
           +  ++  ++S  +  G  ++  + F  M    ++      +S ++D   + G  KEA  +
Sbjct: 344 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 403

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
              M    IKP   V   +L AC
Sbjct: 404 IESM---PIKPDGAVWGALLGAC 423


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 321/581 (55%), Gaps = 78/581 (13%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITE 147
           +F+ +  P  F +NS++RA L        +++Y  M+   S +PN FT     KAC+   
Sbjct: 131 LFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           A  EG Q+HA  ++ GL    +V++                                L++
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQT-------------------------------GLLN 218

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KC  +  A+ +F                G A                DK+ + WSA+
Sbjct: 219 LYAKCEQVALARTVF---------------DGMA---------------GDKNLVAWSAM 248

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           + GY++ G   EAL +F EMQ   ++P +  +  V++ACA  GALD G W+H ++ R  I
Sbjct: 249 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 308

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
            VD  L TAL+DMYAKCG ++ A  VF+ M  K+   W+AMI G A+HG  +DA+ LF +
Sbjct: 309 TVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSR 368

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M   K+RP+ +TF  VLSACAH+G+++ G +  + MQ + GI P +E+YGC+VDLL R+G
Sbjct: 369 MLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGCMVDLLCRSG 427

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------- 498
            L +A   +  MP+ PN+ +W  LL AC+    ++  E   K LLE+EP N         
Sbjct: 428 LLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSN 487

Query: 499 -----RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 + D V+ +R+ MK + +    G S I++NG +HEF   D SHP+++EI L+L++
Sbjct: 488 LYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLRE 547

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           + ++++  G+ P ++ VL D+ EEEKE A   HSE+LAIA+G + T     IRV+KNLR 
Sbjct: 548 MADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRF 607

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH   K+ISK + R+I+VRDRVR+H F  G CSC DFW
Sbjct: 608 CLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 14/273 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWNSVLRAC 108
           +Q HA  L+ G     YV   L+  +A  +     LA  VF+ +    N+  W++++   
Sbjct: 195 RQLHAQALRQGLATSAYVQTGLLNLYA--KCEQVALARTVFDGMAGDKNLVAWSAMVSGY 252

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                    + L+ EM  V  +P++ T  +V  AC+   A   G  VHA++ + G+  D+
Sbjct: 253 SRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDL 312

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD- 227
            + ++ I MYA  G + +AR + D   + D   W+A+I G+   G +E A  LF    + 
Sbjct: 313 ELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLEL 372

Query: 228 ---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEI-TWSAIIDGYTKDGYYKEA 280
               N  ++  ++S  A  G  E+ R+ ++ M +   K  +  +  ++D   + G   +A
Sbjct: 373 KVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDA 432

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
                 M    + P   +   +L AC S   +D
Sbjct: 433 YSFVIGM---PVSPNSVIWRTLLVACKSSNRID 462


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 316/554 (57%), Gaps = 54/554 (9%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVHAHVV NG   D+ + +  +  YA    ++ A  + D  +  D   W+ ++ G+ K G
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 214 DIEGAKELFKS------TKDKNTGSY---------------------------------N 234
           D  G    F+       T D  T  +                                  
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCA 140

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           +++  +A+    E+A++LF  M  KD +TW+ +I  Y     Y E+L +F+ M+ + + P
Sbjct: 141 SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVP 199

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            K  +  V+ ACA LGA+ +  + +D++ RN   +D +LGTA++DMYAKCG ++ A +VF
Sbjct: 200 DKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVF 259

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           + MK K V +W+AMI     HGR  DAI+LF  M    + P+R+TF  +L AC+HAG+I+
Sbjct: 260 DRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIE 319

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            GL+    M + + + P+V+HY C+VDLLGRAG L EA  +I +M +E +  +W ALLGA
Sbjct: 320 EGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGA 379

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H ++E  E+    LLE++PQN               + + VAK R +M +R +K  P
Sbjct: 380 CRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIP 439

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G + I+V+   ++F  GD SHPQ KEIY ML  +I+KL+M GY P++  VL D++EE K+
Sbjct: 440 GWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQ 499

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSEKLAIAFG I    G  IR+ KNLRVC DCH+ +K++S + +R IIVRD  R+
Sbjct: 500 EMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRF 559

Query: 641 HHFRNGKCSCNDFW 654
           HHF +G CSC D+W
Sbjct: 560 HHFNDGTCSCGDYW 573



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 172/374 (45%), Gaps = 42/374 (11%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H++Q HA ++ +G  QD  ++  L+  +A  +    + A  +F+ +   +   W+ ++  
Sbjct: 18  HIRQVHAHVVANGTLQDLVIANKLLYTYAQHK--AIDDAYSLFDGLTMRDSKTWSVMVGG 75

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  +     + + E++     P+ +T P V + C      + G  +H  V+K+GL  D
Sbjct: 76  FAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSD 135

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE----------- 216
             V +S + MYA    V  A+++ +     D++ W  +I  Y  C   E           
Sbjct: 136 HFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREE 195

Query: 217 -------------------GAKELFKSTKD---KNTGSYN-----AMISGFARFGRFEEA 249
                              GA    +   D   +N  S +     AMI  +A+ G  E A
Sbjct: 196 GVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESA 255

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R++F+ M +K+ I+WSA+I  Y   G  K+A+++F+ M    I P +     +L AC+  
Sbjct: 256 REVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHA 315

Query: 310 GALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNA 367
           G +++G+   + + + +++  D    T +VD+  + GRLD A ++ E M + K+   W+A
Sbjct: 316 GLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSA 375

Query: 368 MIGGLAMHGRADDA 381
           ++G   +H + + A
Sbjct: 376 LLGACRIHSKMELA 389



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 150/345 (43%), Gaps = 39/345 (11%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T  Q  +  H V+LK G   DH+V  +LV  +A       E A ++F  +   ++  W  
Sbjct: 115 TDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIV--VEDAQRLFERMLSKDLVTWTV 172

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++ A  + N  +  + L+  M      P+K    TV  AC+   A       + ++V+NG
Sbjct: 173 MIGAYADCN-AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNG 231

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              DV + ++ I MYA  G V  AR++ D   + +VI W+A+I  Y   G  + A +LF 
Sbjct: 232 FSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFH 291

Query: 224 STKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKD 274
                    N  ++ +++   +  G  EE  + FN M ++  +      ++ ++D   + 
Sbjct: 292 MMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRA 351

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   EAL +   M  +K    + + S +L AC           IH  ++      +++L 
Sbjct: 352 GRLDEALRLIEAMTVEK---DERLWSALLGACR----------IHSKMELAEKAANSLLE 398

Query: 335 ---------TALVDMYAKCGRLDMAWKVFEDM----KMKEVFTWN 366
                      L ++YAK G+ +   K F DM    K+K++  W 
Sbjct: 399 LQPQNPGHYVLLSNIYAKAGKWEKVAK-FRDMMTQRKLKKIPGWT 442


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 350/660 (53%), Gaps = 98/660 (14%)

Query: 27  SEFSQKTIL---------DILNTKCHTSWQHLKQAHAVILKSG------HFQDHYVSGTL 71
           S FS+ ++L         ++L T   +S   L+Q HA  +++G          H +   L
Sbjct: 2   SPFSETSVLLLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIF-YL 60

Query: 72  VKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-S 129
           V   +    S    A KVF+ + KP NVF+WN+++R   E       +SLY EM      
Sbjct: 61  VSLPSPPPMS---YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFV 117

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P+  TYP + KA       + G  +H+                                
Sbjct: 118 EPDTHTYPFLLKAVGKMADVRLGETIHS-------------------------------V 146

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           ++  G  S +   N+L+  Y  CGD+  A                               
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASA------------------------------- 175

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            K+F++M +KD + W+++I+G+ ++G  +EAL ++ EM    IKP  F +  +L+ACA +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKI 235

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G   H ++ +  +  +      L+D+YA+CGR++ A  +F++M  K   +W ++I
Sbjct: 236 GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 370 GGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            GLA++G   +AIELF  M+ +E + P  ITF  +L AC+H GM+  G +    M + Y 
Sbjct: 296 VGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYK 355

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P +EH+GC+VDLL RAG + +A E I  MPM+PN  +W  LLGAC  HG+ +  E   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELAR 415

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             +L++EP +              +R  DV K+RK M   G++  PG S+++V   +HEF
Sbjct: 416 MKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEF 475

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHPQ   IY  LK++ ++L++EGY P  S V  D++EEEKE A  YHSEK+AIAF
Sbjct: 476 LMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAF 535

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+T     IRV+KNL+VC DCH A KL+SKV+ R+I+VRDR R+HHF+NG CSC D+W
Sbjct: 536 MLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 331/569 (58%), Gaps = 21/569 (3%)

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
            WNSVL    +       +    E+     +P+  +Y T+  +C +  ++ E  Q     
Sbjct: 8   TWNSVLAGMSKKRGK---LKEAQELFVKIPEPDAVSYNTML-SCYVRNSNMERAQA---F 60

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
            ++    D    ++ I  +A    ++KAR +       +V+ WNA+I GY++CGD++ A 
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSAL 120

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           +LF+    K+  ++ AMI+G+ + GR   A +LF +M +K+ +TW+A+I GY ++   ++
Sbjct: 121 KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAED 180

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            +++F  M    I+P    LS  L  C+ L AL  G  +H  V ++ +C D   GT+L+ 
Sbjct: 181 GVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLIS 240

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG L+  WK+F  +  ++V TWNAMI G A HG    A+ LF +M  + M+PD IT
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWIT 300

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL AC HAG  D G++    M + YG+  + +HY C+VDLLGRAG L EA ++I  M
Sbjct: 301 FVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P +P+AAV+  LLGACR H   E  E   + LL ++P +              +R D VA
Sbjct: 361 PFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVA 420

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++RK MK   +   PG S I+V  + H+FR+GD  HP++  I+  LK++ +K+K+ GY P
Sbjct: 421 RVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVP 480

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           +    L D+ EE+KE    +HSEKLAIA+G I   PG  IRV KNLRVC DCH A K IS
Sbjct: 481 DLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYIS 540

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ +R+IIVRD  R+HHF++G CSC D+W
Sbjct: 541 QIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 151/319 (47%), Gaps = 24/319 (7%)

Query: 199 VICWNALIDGYLKC-GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
            + WN+++ G  K  G ++ A+ELF    + +  SYN M+S + R    E A+  F +M 
Sbjct: 6   TVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMP 65

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQG 315
            KD  +W+ +I G+ ++    +A ++F       I P K V++   +++     G LD  
Sbjct: 66  IKDTPSWNTMITGFAQNQQMDKARDLF------LIMPTKNVVTWNAMISGYVECGDLDSA 119

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
           + + +     S+    V  TA++  Y K GR+ +A ++FE M  K + TWNAMI G   +
Sbjct: 120 LKLFEKAPFKSV----VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIEN 175

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP---E 432
            RA+D ++LF  M    ++P+  T +  L  C+    +  G Q    + Q+    P   +
Sbjct: 176 HRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQ----VHQLVCKSPLCDD 231

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
                 ++ +  + G L +  ++   +P   +   W A++    +HGE   G++   +  
Sbjct: 232 TTAGTSLISMYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGE---GKKALGLFD 287

Query: 493 EMEPQNRRCDDVAKMRKLM 511
           EM  +  + D +  +  LM
Sbjct: 288 EMIEKGMKPDWITFVAVLM 306



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +     LA ++F  + + N+  WN+++   +E++     + L+  MVG   +PN  T  +
Sbjct: 143 KLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSS 202

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
               CS   A + G QVH  V K+ LC D    +S I MY   G +    ++     + D
Sbjct: 203 ALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRD 262

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMI-----SGFARFG--RFE 247
           V+ WNA+I GY + G+ + A  LF    +K       ++ A++     +GF   G   F 
Sbjct: 263 VVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFH 322

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
              K +  +   D  T   ++D   + G   EA+++  +M     KP   V   +L AC 
Sbjct: 323 SMAKDYGLVAKPDHYT--CMVDLLGRAGKLVEAVDLIEKM---PFKPHAAVFGTLLGAC- 376

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTA---LVDMYAKCGRLDMAWKVFEDMK 358
               + +   + +   +  + +D    T    L ++YA   R D   +V + MK
Sbjct: 377 ---RIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMK 427


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/666 (36%), Positives = 362/666 (54%), Gaps = 100/666 (15%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK-- 73
           P EI   N   S+  Q   L +L T C T    LKQ HA  ++  +F  H  S  L    
Sbjct: 13  PIEIKGEN---SKTHQSRFLHLL-TDC-TDLSKLKQIHAQAIR--NFSTHNSSLFLYSRI 65

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC---LEHNEPWRVISLYSEMVGVDS- 129
            H +S   +F+ A +VFN +  PN F+WN+++ AC   L+  E  + I ++  M+   S 
Sbjct: 66  LHVSS-LIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKE--QAIEIFYRMLEEGSV 122

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P+K T+P + KAC+                       V   S G Q +A         Q
Sbjct: 123 EPDKHTFPFLLKACAY----------------------VFALSEGRQAHA---------Q 151

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           I   G   DV   N+LI  Y  C                               G    A
Sbjct: 152 IFKLGLDLDVYVGNSLIHLYASC-------------------------------GCLSMA 180

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            K+F +M  +  ++W+ +ID Y + G ++ AL++F EMQ +  +P  + +  +++ACA +
Sbjct: 181 LKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ-NSFEPDGYTMQSIVSACAGI 239

Query: 310 GALDQGIWIHDHVKR---NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           GAL  G+W H +V R    ++  D ++ ++LVDMY+KCG L MA +VFE M   ++ +WN
Sbjct: 240 GALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWN 299

Query: 367 AMIGGLAMHGRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           +MI  LAMHGR   A++ F ++ + EK  P+ +TF  VLSAC H GM+  G +    M  
Sbjct: 300 SMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVN 359

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE-VEFG 484
            Y I+P +EHYGC+VDLL R+G++ EA E++++M ++P+A +W +LL AC K    VE  
Sbjct: 360 DYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELS 419

Query: 485 ERLGKILLEME---------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           E +   +L+ E                  R+ +DV  +RK+M + G+   PG S I+++G
Sbjct: 420 EEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDG 479

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ-VLFDIDEEEKETAPKYHSE 588
           + HEF  GD SHP++KEIY ++  I EKL+  GYSP+ SQ  + D  +  K+ + K HSE
Sbjct: 480 ISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSE 539

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LAIAFG +N  PG  +R+ KNLRVC DCH  TKLIS++F  +II+RDR R+HHF++G C
Sbjct: 540 RLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMC 599

Query: 649 SCNDFW 654
           SC DFW
Sbjct: 600 SCMDFW 605


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/658 (33%), Positives = 358/658 (54%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H +++KSG   D +    L   +A  R  N   A KVF+ + + ++  WN+++    
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVN--EARKVFDRMPERDLVSWNTIVAGYS 212

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + +   M   + KP+  T  +V  A S       G ++H + +++G    V+
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------------ 211
           + ++ + MYA  G +  ARQ+ D   + +V+ WN++ID Y++                  
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 212 -----------------CGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEAR 250
                             GD+E  + + K +     D+N    N++IS + +    + A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F ++  +  ++W+A+I G+ ++G   +AL  F++M+   +KP  F    V+ A A L 
Sbjct: 393 SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELS 452

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
                 WIH  V R+ +  +  + TALVDMYAKCG + +A  +F+ M  + V TWNAMI 
Sbjct: 453 ITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG    A+ELF +MQ+  ++P+ +TF  V+SAC+H+G+++ GL+    M++ Y I+
Sbjct: 513 GYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIE 572

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
             ++HYG +VDLLGRAG L EA + I  MP++P   V+ A+LGAC+ H  V F E+  + 
Sbjct: 573 LSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAER 632

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L E+ P +                 + V ++R  M  +G++  PG SM+++   +H F +
Sbjct: 633 LFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HP  K+IY  L+K+I  +K  GY P+++ VL  ++ + KE     HSEKLAI+FG 
Sbjct: 693 GSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGL 751

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G TI V KNLRVC DCH+ATK IS V  R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/564 (23%), Positives = 250/564 (44%), Gaps = 77/564 (13%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
           IP + +     L  L  +C +S + L+Q   ++ K+G +Q+H+    LV      R+ + 
Sbjct: 31  IPANVYEHPAAL--LLERC-SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFC--RYGSV 85

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           + A +VF  +      +++++L+   + ++  + +  +  M   D +P  + +  + K C
Sbjct: 86  DEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
                 + G ++H  +VK+G   D+   +    MYA    VN+AR++ D   + D++ WN
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWN 205

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSY-------------------------NAMIS 238
            ++ GY + G    A E+ KS  ++N                              AM S
Sbjct: 206 TIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS 265

Query: 239 GF--------------ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
           GF              A+ G  E AR+LF+ M +++ ++W+++ID Y ++   KEA+ +F
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIF 325

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M  + +KP    +   L ACA LG L++G +IH       +  +  +  +L+ MY KC
Sbjct: 326 QKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKC 385

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +D A  +F  ++ + + +WNAMI G A +GR  DA+  F +M+   ++PD  T+  V+
Sbjct: 386 KEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVI 445

Query: 405 SACAHAGM---------------IDRGLQALTYMQQMYG---------------IDPEVE 434
           +A A   +               +D+ +   T +  MY                 +  V 
Sbjct: 446 TAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVT 505

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +  ++D  G  G+   A E+   M    ++PN   + +++ AC   G VE G +   ++
Sbjct: 506 TWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565

Query: 492 LEMEPQNRRCDDVAKMRKLMKERG 515
            E        D    M  L+   G
Sbjct: 566 KENYSIELSMDHYGAMVDLLGRAG 589


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/682 (33%), Positives = 362/682 (53%), Gaps = 96/682 (14%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFS-QKTILDILNTKCHTS-----------WQHL 49
           + K TT+  P    P  ++   + T + + Q  +    +T+ H+             ++L
Sbjct: 49  TVKTTTSSAPLDRNPT-MNKIKLQTQQLAFQHPVTRNFDTQSHSPVHEALLRSGPRLRNL 107

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           +Q HA I+ SG  +   +   L+   C A S       A ++F +V  P+ F+++S+L+ 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGS----ITYARRLFPTVPNPDSFLFDSLLKV 163

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +       +  Y  M+   +  + +T+ +V KAC+   A + G ++H+HV+   +CG 
Sbjct: 164 TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM---VCG- 219

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                        +G              SD+    ALI  Y K  D++ AK        
Sbjct: 220 -------------YG--------------SDMYVQAALIALYAKASDMKVAK-------- 244

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                                  K+F+ M  +  I W+++I GY ++G  +E++ +F+ M
Sbjct: 245 -----------------------KVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLM 281

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
                +P    +  +L++C+ LGALD G W+HD+   N   ++ VLGT+L++MY +CG +
Sbjct: 282 MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNV 341

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A +VF+ MK + V TW AMI G  MHG    A+ELF +M+    RP+ ITF  VLSAC
Sbjct: 342 SKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSAC 401

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS-MPMEPNAA 466
           AH+G+ID G +  + M++ YG+ P VEH  C+VD+ GRAG L +A + I   +P EP  A
Sbjct: 402 AHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPA 461

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
           VW ++LGACR H   + G ++ + +L +EP+N               R D V  +R +M 
Sbjct: 462 VWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMT 521

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
            R +K   G S I++N   + F  GD SHPQ   IY  L +++ +    GY P    ++ 
Sbjct: 522 RRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMH 581

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEE++ A +YHSEKLA+AFG + T+ G TIR++KNLR+CEDCHSA K IS +  R+I
Sbjct: 582 DLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREI 641

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           IVRD+ R+HHF++G CSC D+W
Sbjct: 642 IVRDKFRFHHFKDGSCSCLDYW 663


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 321/581 (55%), Gaps = 78/581 (13%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITE 147
           +F+ +  P  F +NS++RA L        +++Y  M+   S +PN FT     KAC+   
Sbjct: 82  LFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
           A  EG Q+HA  ++ GL    +V++                                L++
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQT-------------------------------GLLN 169

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KC  +  A+ +F                G A                DK+ + WSA+
Sbjct: 170 LYAKCEQVALARTVF---------------DGMA---------------GDKNLVAWSAM 199

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           + GY++ G   EAL +F EMQ   ++P +  +  V++ACA  GALD G W+H ++ R  I
Sbjct: 200 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 259

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
            VD  L TAL+DMYAKCG ++ A  VF+ M  K+   W+AMI G A+HG  +DA+ LF +
Sbjct: 260 TVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSR 319

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M   K+RP+ +TF  VLSACAH+G+++ G +  + MQ + GI P +E+YGC+VDLL R+G
Sbjct: 320 MLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGCMVDLLCRSG 378

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------- 498
            L +A   +  MP+ PN+ +W  LL AC+    ++  E   K LLE+EP N         
Sbjct: 379 LLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSN 438

Query: 499 -----RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 + D V+ +R+ MK + +    G S I++NG +HEF   D SHP+++EI L+L++
Sbjct: 439 LYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLRE 498

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           + ++++  G+ P ++ VL D+ EEEKE A   HSE+LAIA+G + T     IRV+KNLR 
Sbjct: 499 MADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRF 558

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH   K+ISK + R+I+VRDRVR+H F  G CSC DFW
Sbjct: 559 CLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 14/273 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWNSVLRAC 108
           +Q HA  L+ G     YV   L+  +A  +     LA  VF+ +    N+  W++++   
Sbjct: 146 RQLHAQALRQGLATSAYVQTGLLNLYA--KCEQVALARTVFDGMAGDKNLVAWSAMVSGY 203

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                    + L+ EM  V  +P++ T  +V  AC+   A   G  VHA++ + G+  D+
Sbjct: 204 SRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDL 263

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD- 227
            + ++ I MYA  G + +AR + D   + D   W+A+I G+   G +E A  LF    + 
Sbjct: 264 ELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLEL 323

Query: 228 ---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEI-TWSAIIDGYTKDGYYKEA 280
               N  ++  ++S  A  G  E+ R+ ++ M +   K  +  +  ++D   + G   +A
Sbjct: 324 KVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDA 383

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
                 M    + P   +   +L AC S   +D
Sbjct: 384 YSFVIGM---PVSPNSVIWRTLLVACKSSNRID 413


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/735 (32%), Positives = 367/735 (49%), Gaps = 124/735 (16%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS-RFSNFELALKVFNSVHKPNVFVWN 102
            S    +QAHA+IL+   F D  ++ +L+  +AN+   S  +L+L + + +  P +F ++
Sbjct: 14  ASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFS 73

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           S++ A    +    V++ +S +  +   P+ F  P+  K+C+   A   G Q+HA    +
Sbjct: 74  SLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAAS 133

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G   D  V SS   MY     +  AR++ D     DV+ W+A+I GY + G +E AKELF
Sbjct: 134 GFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELF 193

Query: 223 KSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEM---------------------- 256
              +    + N  S+N M++GF   G ++EA  +F  M                      
Sbjct: 194 GEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCL 253

Query: 257 -----------------NDKDEITWSAIIDGYTKDGYYKE-------------------- 279
                               D+   SA++D Y K G  KE                    
Sbjct: 254 EDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFL 313

Query: 280 -----------ALEVFNEMQRDKIKPRKFVLSCVLAACASLG------------------ 310
                      ALEVFN+ +  K++      + ++A+C+  G                  
Sbjct: 314 TGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVE 373

Query: 311 -----------------ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                            AL  G  IH    R  I  D  +G+AL+DMYAKCGR+ +A + 
Sbjct: 374 PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRC 433

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M    + +WNA++ G AMHG+A + +E+F  M +   +PD +TF CVLSACA  G+ 
Sbjct: 434 FDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLT 493

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G +    M + +GI+P++EHY C+V LL R G L EA  +I  MP EP+A VW ALL 
Sbjct: 494 EEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           +CR H  +  GE   + L  +EP N                 D+  ++R++MK +G++ N
Sbjct: 554 SCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKN 613

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           PG S I+V   +H    GD SHPQ+K+I   L K+  ++K  GY P ++ VL D++E++K
Sbjct: 614 PGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDK 673

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E     HSEKLA+  G +NT PG  ++VIKNLR+C+DCH+  K+IS++  R+I VRD  R
Sbjct: 674 EQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNR 733

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC DFW
Sbjct: 734 FHHFKDGVCSCGDFW 748


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 322/561 (57%), Gaps = 64/561 (11%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK------ARQILDDGSKSDVICWNALID 207
           Q+HA  +++G    V  ++     +  F  V+       A QI +     ++  WN +I 
Sbjct: 53  QIHAFSIRHG----VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIR 108

Query: 208 GYLKCGDIEGAKELFKST-------KDKNTGSY--------------------------- 233
           G+ +  +   A ELF           D +T  +                           
Sbjct: 109 GFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFD 168

Query: 234 ------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                 N+++  ++  G    A ++F  M+ +D + W+++I+G+  +G   EAL ++ EM
Sbjct: 169 SLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM 228

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
             + ++P  F +  +L+AC  LGAL  G  +H ++ +  +  +     AL+D+Y+KCG  
Sbjct: 229 GSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNF 288

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A KVF++M+ + V +W ++I GLA++G  ++A++LF +++R+ ++P  ITF  VL AC
Sbjct: 289 RDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYAC 348

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H GM+D G      M++ YGI P +EH+GC+VDLL RAG + +A + I +MP+ PNA +
Sbjct: 349 SHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVI 408

Query: 468 WEALLGACRKHGEVEFGE-------RLGK-------ILLEMEPQNRRCDDVAKMRKLMKE 513
           W  LLGAC  HG +E GE       RL +       +L  +    RR  DV  +RK+M  
Sbjct: 409 WRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLM 468

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           +G+K  PG S++++   ++EF  GD SHPQ +E Y ML KI + LK+EGY P +  VL D
Sbjct: 469 KGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLAD 528

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           I+EEEKETA  +H+EK+AIAF  +NT PG  IR++KNLRVC DCH A KLISKVF+R+II
Sbjct: 529 IEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREII 588

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRDR R+HHF++G CSC D+W
Sbjct: 589 VRDRSRFHHFKDGSCSCKDYW 609



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 174/386 (45%), Gaps = 54/386 (13%)

Query: 42  CHTSWQHLKQAHAVILKSG------HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           C +S   LKQ HA  ++ G       F  H +   LV   A   F     A ++FN +  
Sbjct: 44  CGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFA-LVSLSAPMSF-----AAQIFNQIQA 97

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQ 154
           PN+F WN+++R   E   P   + L+S+M    S  P+  T+P +FKA +       G  
Sbjct: 98  PNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEG 157

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +H+ VV+NG      V++S + MY+  G +  A Q+ +  S  D + WN++I+G+   G 
Sbjct: 158 IHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM 217

Query: 215 IEGAKELFKSTKD---------------------------------------KNTGSYNA 235
              A  L++                                           +N  + NA
Sbjct: 218 PNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNA 277

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  +++ G F +A+K+F+EM ++  ++W+++I G   +G   EAL++F E++R  +KP 
Sbjct: 278 LLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPS 337

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVF 354
           +     VL AC+  G LD+G      +K     +  +     +VD+  + G++  A+   
Sbjct: 338 EITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYI 397

Query: 355 EDMKM-KEVFTWNAMIGGLAMHGRAD 379
            +M +      W  ++G   +HG  +
Sbjct: 398 RNMPVPPNAVIWRTLLGACTIHGHLE 423


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/659 (34%), Positives = 357/659 (54%), Gaps = 65/659 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H + LK G   D YV+ +L+  H  SR+     A  +F+ +   ++  WN+++    +  
Sbjct: 173 HCLALKFGFMWDVYVAASLI--HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++L + +  +DS     T  ++  AC+       GV +H++ +K+GL  ++ V +
Sbjct: 231 NAKEALTLSNGLRAMDS----VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------------------- 209
             I +YA FG +   +++ D     D+I WN++I  Y                       
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 210 ------------LKCGDIEGAKELFKST-------KDKNTGSYNAMISGFARFGRFEEAR 250
                        + GDI   + +   T       +D   G  NA++  +A+ G  + AR
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG--NAVVVMYAKLGLVDSAR 404

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASL 309
            +FN + + D I+W+ II GY ++G+  EA+E++N M+ + +I   +     VL AC+  
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL QG+ +H  + +N + +D  + T+L DMY KCGRL+ A  +F  +       WN +I
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                HG  + A+ LF +M  E ++PD ITF  +LSAC+H+G++D G      MQ  YGI
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P ++HYGC+VD+ GRAG L  A + I SM ++P+A++W ALL ACR HG V+ G+   +
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L E+EP++               + + V ++R +   +G++  PG S ++V+  +  F 
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
           TG+ +HP  +E+Y  L  +  KLKM GY P+   VL D++++EKE     HSE+LAIAF 
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I T    TIR+ KNLRVC DCHS TK ISK+ +R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 231/500 (46%), Gaps = 48/500 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           T+ Q  K  HA ++ S   Q+  +S  LV  +      N  LA   F+ +   +V+ WN 
Sbjct: 65  TNLQSAKCLHARLVVSKQIQNVCISAKLVNLYC--YLGNVALARHTFDHIQNRDVYAWNL 122

Query: 104 VLRACLEHNEPWRVISLYSE-MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           ++           VI  +S  M+     P+  T+P+V KAC       +G ++H   +K 
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---IDGNKIHCLALKF 179

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G   DV+V +S I +Y+ +  V  AR + D+    D+  WNA+I GY + G+ + A  L 
Sbjct: 180 GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLS 239

Query: 223 KSTK------------------DKNTG----SY-------------NAMISGFARFGRFE 247
              +                  D N G    SY             N +I  +A FGR  
Sbjct: 240 NGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           + +K+F+ M  +D I+W++II  Y  +     A+ +F EM+  +I+P    L  + +  +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 308 SLGALDQGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
            LG +     +     R    + D  +G A+V MYAK G +D A  VF  +   +V +WN
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419

Query: 367 AMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            +I G A +G A +AIE++  M+ E ++  ++ T+  VL AC+ AG + +G++    + +
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
             G+  +V     + D+ G+ G L +A  +   +P   N+  W  L+ AC  HG    GE
Sbjct: 480 -NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-AC--HGFHGHGE 534

Query: 486 RLGKILLEMEPQNRRCDDVA 505
           +   +  EM  +  + D + 
Sbjct: 535 KAVMLFKEMLDEGVKPDHIT 554



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 184/427 (43%), Gaps = 80/427 (18%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T+F+ C+  ++ K    +HA +V +    +V + +  + +Y   G V  AR   D     
Sbjct: 59  TLFRYCTNLQSAK---CLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115

Query: 198 DVICWNALIDGYLKCGDIEGAKELF-----------------------KSTKDKNTGSYN 234
           DV  WN +I GY + G+       F                       ++  D N     
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCL 175

Query: 235 AMISGF--------------ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           A+  GF              +R+     AR LF+EM  +D  +W+A+I GY + G  KEA
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L + N ++          +  +L+AC   G  ++G+ IH +  ++ +  +  +   L+D+
Sbjct: 236 LTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YA+ GRL    KVF+ M ++++ +WN++I    ++ +   AI LF +M+  +++PD +T 
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351

Query: 401 ACVLSACAHAGMID--RGLQALTY-----------------MQQMYGI------------ 429
             + S  +  G I   R +Q  T                  M    G+            
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME----PNAAVWEALLGACRKHGEVEFGE 485
           + +V  +  I+    + G+ +EA E+ + M  E     N   W ++L AC + G +  G 
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471

Query: 486 RL-GKIL 491
           +L G++L
Sbjct: 472 KLHGRLL 478


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 353/605 (58%), Gaps = 29/605 (4%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFN 91
           ++LD   + C      L+Q HA ++K+      + VS  +  C  +      + A  VF+
Sbjct: 11  SVLDKCKSLCE-----LRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFS 65

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV--DSKPNKFTYPTVFKACSITEAD 149
            +  PN F++ ++++   + + P   + LY+ M+     S   +F+ P+V KAC    A 
Sbjct: 66  RIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAF 125

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
            EG QVH  V+K  L  D  V +S ++MY  FG +  AR++ D     DV+ WN++I GY
Sbjct: 126 DEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGY 185

Query: 210 LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
           LK G+IE A ELF    +++  S NAMI G+ + GR E A K+F  M+DKD +TW+++I 
Sbjct: 186 LKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMIS 245

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
            Y ++    +AL++F EM    ++P    +  VL+A A LG +++G W+H +V  N I +
Sbjct: 246 AYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIEL 305

Query: 330 DA-VLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFK 387
            +  +G+AL+DMY+KCG ++ A+ VF  +   + +  WN+MI GLA+HG A +A+++F +
Sbjct: 306 SSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVE 365

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+R  + P+ ITF  +LS C+H G+++ G      M + Y I P ++HYGC++DL GRAG
Sbjct: 366 MERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAG 425

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------- 499
            L +A  VI +MP E +   W+A+L A  KHG +E G+      +E+ P +         
Sbjct: 426 RLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSN 485

Query: 500 ------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG---DGSHPQVKEIYLM 550
                 R DDVAK+R +M++RG+K   G S + VBG +HEF  G   D S+    ++   
Sbjct: 486 IYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYS--GQVLAK 543

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           + +++ +LK++GY P+ +QVL DI++E KE+    HSEK+A AFG I+ +  A I ++KN
Sbjct: 544 IAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAXAFGLIHINKSAPIHIVKN 603

Query: 611 LRVCE 615
           LR+ +
Sbjct: 604 LRIVD 608


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 336/578 (58%), Gaps = 54/578 (9%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P++  Y T+ K C+     KEG  VH HV+ +    D+ +++S + MYA  G +  AR+
Sbjct: 71  EPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARR 130

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTG---S 232
           + D+    D++ W ++I GY +      A  LF               S+  K  G   S
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190

Query: 233 YN----------------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           YN                      +++  +AR G   EA  +F+++  K+E++W+A+I G
Sbjct: 191 YNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAG 250

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y + G  +EAL +F  MQR+  +P +F  S +L++C+S+G L+QG W+H H+ ++S  + 
Sbjct: 251 YARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLV 310

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +G  L+ MYAK G +  A KVF+ +   +V + N+M+ G A HG   +A + F +M R
Sbjct: 311 GYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIR 370

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             + P+ ITF  VL+AC+HA ++D G      M++ Y I+P+V HY  IVDLLGRAG L 
Sbjct: 371 FGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLD 429

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           +A+  I  MP+EP  A+W ALLGA + H   E G    + + E++P              
Sbjct: 430 QAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYA 489

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R +DVAK+RK+MK+ G+K  P  S ++V   +H F   D +HPQ ++I+ M +K+ +
Sbjct: 490 SAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQ 549

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           K+K  GY P++S VL  +D++EKE   +YHSEKLA++F  +NT PG+TIR++KN+RVC D
Sbjct: 550 KIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGD 609

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CHSA K +S V KR+IIVRD  R+HHF +G CSC D+W
Sbjct: 610 CHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 147/276 (53%), Gaps = 8/276 (2%)

Query: 190 ILDDGS-KSDVICWNALIDGYLKCGDIEGAK----ELFKSTKDKNTGSYNAMISGFARFG 244
           ++D GS + D   +N L+    + G ++  K     +  S    +    N+++  +AR G
Sbjct: 64  LIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG 123

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
             E AR+LF+EM  +D ++W+++I GY ++    +AL +F  M  D  +P +F LS ++ 
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
            C  + + + G  IH    +     +  +G++LVDMYA+CG L  A  VF+ +  K   +
Sbjct: 184 CCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS 243

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           WNA+I G A  G  ++A+ LF +MQRE  RP   T++ +LS+C+  G +++G     +  
Sbjct: 244 WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG--KWLHAH 301

Query: 425 QMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSM 459
            M      V + G  ++ +  ++G + +AE+V   +
Sbjct: 302 LMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL 337



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 175/387 (45%), Gaps = 46/387 (11%)

Query: 32  KTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           +T+ + L  +C T    LK+    H  +L S    D  +  +L+  +A  R  + E A +
Sbjct: 74  RTLYNTLLKRC-TQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYA--RCGSLEGARR 130

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ +   ++  W S++    +++     + L+  M+   ++PN+FT  ++ K C    +
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
              G Q+HA   K G   +V V SS + MYA  G + +A  + D     + + WNALI G
Sbjct: 191 YNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAG 250

Query: 209 YLKCGDIEGAKELFKSTKDK----NTGSYNAMISG------------------------- 239
           Y + G+ E A  LF   + +       +Y+A++S                          
Sbjct: 251 YARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLV 310

Query: 240 ----------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                     +A+ G   +A K+F+++   D ++ ++++ GY + G  KEA + F+EM R
Sbjct: 311 GYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIR 370

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             I+P       VL AC+    LD+G      +++ +I         +VD+  + G LD 
Sbjct: 371 FGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQ 430

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           A    E+M ++  V  W A++G   MH
Sbjct: 431 AKSFIEEMPIEPTVAIWGALLGASKMH 457



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           K  L V + +    ++P + + + +L  C  LG L +G  +H HV  ++   D V+  +L
Sbjct: 56  KTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSL 115

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYA+CG L+ A ++F++M  +++ +W +MI G A + RA DA+ LF +M  +   P+ 
Sbjct: 116 LFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNE 175

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            T + ++  C +    + G Q      + YG    V     +VD+  R GYL EA  V  
Sbjct: 176 FTLSSLVKCCGYMASYNCGRQIHACCWK-YGCHSNVFVGSSLVDMYARCGYLGEAMLVFD 234

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500
            +  + N   W AL+    + GE   GE    + + M+ +  R
Sbjct: 235 KLGCK-NEVSWNALIAGYARKGE---GEEALALFVRMQREGYR 273


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 337/623 (54%), Gaps = 78/623 (12%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           HL Q HA I+++   Q+H++S   +   A S   +   + +VF+ + KP+   +N ++RA
Sbjct: 83  HLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRA 142

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
               + P +   LY EM      PN  +   V K+C    +   G+Q+HA          
Sbjct: 143 YSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHA---------- 192

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                                +IL DG +SD +    L+D Y  C               
Sbjct: 193 ---------------------RILRDGHQSDNLLLTTLMDLYSCCD-------------- 217

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                            +FEEA K+F+E+   D ++W+ +I     +   ++AL +F+ M
Sbjct: 218 -----------------KFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIM 260

Query: 288 QR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           Q   D  +P       +L ACA+LGAL+ G  +H++++ +       L  +L+ MY++CG
Sbjct: 261 QSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCG 320

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RL+ A+ +F+ M  + V +W+AMI G AMHG   +AIE F +MQ+  + PD  T   VLS
Sbjct: 321 RLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLS 380

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H G++D GL     M +++GI+P + HYGC+VDLLGRAG L +A ++I SM ++P++
Sbjct: 381 ACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDS 440

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
            +W  LLGACR H     GER+   L+E++ Q                  D V  +RK M
Sbjct: 441 TLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFM 500

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           KE+GI+T+PG S I++ G +HEF   D  HP+  EIY ML +I ++LK+ GY    S  L
Sbjct: 501 KEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSEL 560

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            ++  EEK     YHSEKLAIAFG + T PG TIRV KNLR+C DCH+  K++S  + R+
Sbjct: 561 HNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNRE 620

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           +++RDR R+HHFR G+CSCN +W
Sbjct: 621 VVIRDRTRFHHFREGQCSCNGYW 643


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 330/623 (52%), Gaps = 51/623 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H   +K G  +D +V   LV  +AN        A  VF+ +   NV  WNS+    +
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLC--VREAQTVFDLMPHRNVVTWNSLSSCYV 420

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
               P + ++++ EMV    KP+  T  ++  ACS  +  K G  +H   V++G+  DV 
Sbjct: 421 NCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVF 480

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V                                NAL+  Y KC  +  A+ +F     + 
Sbjct: 481 V-------------------------------CNALLSLYAKCVCVREAQVVFDLIPHRE 509

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMN----DKDEITWSAIIDGYTKDGYYKEALEVFN 285
             S+N +++ +     +E+   +F++MN      DEITWS +I G  K+   +EA+E+F 
Sbjct: 510 VASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFR 569

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +MQ    KP +  +  +L AC+    L  G  IH +V R+    D     ALVDMYAKCG
Sbjct: 570 KMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCG 629

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L ++  VF+ M +K+VF+WN MI    MHG   +A+ LF KM    ++PD  TF CVLS
Sbjct: 630 GLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLS 689

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H+ +++ G+Q    M + + ++PE EHY C+VD+  RAG L EA   I  MPMEP A
Sbjct: 690 ACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTA 749

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
             W+A L  CR +  VE  +   K L E++P                +   + +K+RKLM
Sbjct: 750 IAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLM 809

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           KERGI   PG S   V   +H F  GD S+ +  +IY  L ++  K+K  GY P++  VL
Sbjct: 810 KERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVL 869

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            DID+EEK  +   HSEKLA+AFG +N +  +TIRV KNLR+C DCH+A K +S V    
Sbjct: 870 HDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVT 929

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I+VRD +R+HHF+NG CSC DFW
Sbjct: 930 IVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 223/520 (42%), Gaps = 79/520 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  +++ G  +D +VS   V  +A  +      A  VF+ +   +V  WNS+    +
Sbjct: 161 KEIHGFVVRHGMVEDVFVSSAFVNFYA--KCLCVREAQTVFDLMPHRDVVTWNSLSSCYV 218

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
               P + ++++ EMV    KP+  T   +  ACS  +  K G  +H   +K+G+  +V 
Sbjct: 219 NCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVF 278

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK------ 223
           V ++ + +Y    CV +A+ + D     +VI WN+L   Y+ CG  +    +F+      
Sbjct: 279 VSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG 338

Query: 224 ----------------STKDKNTGSY-----------------NAMISGFARFGRFEEAR 250
                             KD  +G                    A+++ +A      EA+
Sbjct: 339 VKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQ 398

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+ M  ++ +TW+++   Y   G+ ++ L VF EM  + +KP    +  +L AC+ L 
Sbjct: 399 TVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQ 458

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM-- 368
            L  G  IH    R+ +  D  +  AL+ +YAKC  +  A  VF+ +  +EV +WN +  
Sbjct: 459 DLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILT 518

Query: 369 ---------------------------------IGGLAMHGRADDAIELFFKMQREKMRP 395
                                            IGG   + R ++A+E+F KMQ    +P
Sbjct: 519 AYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKP 578

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D  T   +L AC+ +  +  G +   Y+ + +  D ++     +VD+  + G L+ +  V
Sbjct: 579 DETTIYSILRACSLSECLRMGKEIHCYVFRHWK-DWDLARTNALVDMYAKCGGLSLSRNV 637

Query: 456 ISSMPMEPNAAVWEALLGACRKHGE-VEFGERLGKILLEM 494
              MP++ +   W  ++ A   HG   E      K+LL M
Sbjct: 638 FDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSM 676



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 225/527 (42%), Gaps = 53/527 (10%)

Query: 4   KVTTTDLPHHLKPEEISATNIPTSEFSQ-----KTILDILNTKCHTSWQHLK--QAHAVI 56
           K  +  +PH L  E I    I TS  ++     K +   +   C  S   LK  Q H   
Sbjct: 10  KSPSFGIPHGLPNEAIK---IYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDA 66

Query: 57  LKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR 116
            + G   D  +    +  HA  +    E A +VF+ +   +V  WNS+    +    P +
Sbjct: 67  TRCGVMSDVSIGNAFI--HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQ 124

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
            ++++ +M     K N  T  ++   CS  +  K G ++H  VV++G+  DV V S+ + 
Sbjct: 125 GLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVN 184

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----------------------- 213
            YA   CV +A+ + D     DV+ WN+L   Y+ CG                       
Sbjct: 185 FYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVT 244

Query: 214 ------------DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
                       D++  K +     K    +N    NA+++ +       EA+ +F+ M 
Sbjct: 245 VSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMP 304

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
            ++ ITW+++   Y   G+ ++ L VF EM  + +KP    +S +L AC+ L  L  G  
Sbjct: 305 HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT 364

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH    ++ +  D  + TALV++YA C  +  A  VF+ M  + V TWN++       G 
Sbjct: 365 IHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGF 424

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
               + +F +M    ++PD +T   +L AC+    +  G + +      +G+  +V    
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG-KVIHGFAVRHGMVEDVFVCN 483

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            ++ L  +   + EA+ V   +P     A W  +L A   + E E G
Sbjct: 484 ALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGILTAYFTNKEYEKG 529


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/660 (35%), Positives = 361/660 (54%), Gaps = 65/660 (9%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRF----SNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
           +LK+G+F+    S   V C     F     + E A KVF+ +   NV  W  ++    + 
Sbjct: 68  LLKTGYFE----SDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                 + L+ +MV     P++FT   V  AC+       G Q H  V+K+GL  DV V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 172 SSGIQMYA-CF--GCVNKARQILDDGSKSDVICWNALIDGYLKCGD-----IEGAKELFK 223
            S + MYA C   G V+ AR++ D     +V+ W A+I GY++ G      IE   E+ +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 224 STKDKNTGSY-----------------------------------NAMISGFARFGRFEE 248
                N  ++                                   N++IS ++R G  E 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           ARK F+ + +K+ ++++ I++ Y K    +EA E+FNE++        F  + +L+  +S
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +GA+ +G  IH  + ++    +  +  AL+ MY++CG ++ A++VF +M    V +W +M
Sbjct: 364 IGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSM 423

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G A HG A  A+E F KM    + P+ +T+  VLSAC+H G+I  GL+    M+  +G
Sbjct: 424 ITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I P +EHY C+VDLLGR+G+L EA E+++SMP + +A V    LGACR HG ++ G+   
Sbjct: 484 IVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAA 543

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           +++LE +P +               + ++VA++RK MKER +    G S I+V   +H+F
Sbjct: 544 EMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKF 603

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHPQ +EIY  L ++  K+K  GY P++  VL D++EE+KE     HSEK+A+A+
Sbjct: 604 YVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAY 663

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           GFI+T     IRV KNLRVC DCH+A K  S V +++I++RD  R+HHF++G CSCND+W
Sbjct: 664 GFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 199/432 (46%), Gaps = 49/432 (11%)

Query: 94  HKPNVFVWNSVLRACLEHNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           +K ++  W S L +C  +NE  +  IS + +M+     PN++ +  VF+ACS  E    G
Sbjct: 3   NKRDLVSW-SALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLG 61

Query: 153 VQVHAHVVKNGLC-GDVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYL 210
             +   ++K G    DV V  + I M+    G +  A ++ D     +V+ W  +I  + 
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 211 KCGDIEGAKELF---------------------------------------KSTKDKNTG 231
           + G    A +LF                                       KS  D +  
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181

Query: 232 SYNAMISGFARF---GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY-KEALEVFNEM 287
              +++  +A+    G  ++ARK+F+ M   + ++W+AII GY + G   +EA+E+F EM
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
            + ++KP  F  S VL ACA+L  +  G  ++  V +  +     +G +L+ MY++CG +
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNM 301

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           + A K F+ +  K + ++N ++   A    +++A ELF +++      +  TFA +LS  
Sbjct: 302 ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGA 361

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +  G I +G Q  + + +  G    +     ++ +  R G +  A +V + M  + N   
Sbjct: 362 SSIGAIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVIS 419

Query: 468 WEALLGACRKHG 479
           W +++    KHG
Sbjct: 420 WTSMITGFAKHG 431



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 172/376 (45%), Gaps = 49/376 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           +Q H +++KSG   D  V  +LV    KC A+    +   A KVF+ +   NV  W +++
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDD---ARKVFDRMPVHNVMSWTAII 221

Query: 106 RACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
              ++     R  I L+ EMV    KPN FT+ +V KAC+       G QV+A VVK  L
Sbjct: 222 TGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRL 281

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                V +S I MY+  G +  AR+  D   + +++ +N +++ Y K  + E A ELF  
Sbjct: 282 ASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNE 341

Query: 225 TKDKNTGSY---------------------------------------NAMISGFARFGR 245
            +   TG                                         NA+IS ++R G 
Sbjct: 342 IEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGN 401

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E A ++FNEM D + I+W+++I G+ K G+   ALE F++M    + P +     VL+A
Sbjct: 402 IEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSA 461

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           C+ +G + +G+     +K     V  +   A +VD+  + G L+ A ++   M  K +  
Sbjct: 462 CSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADAL 521

Query: 364 TWNAMIGGLAMHGRAD 379
                +G   +HG  D
Sbjct: 522 VLRTFLGACRVHGNMD 537



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 45/278 (16%)

Query: 194 GSKSDVICWNALIDGY----------------LKCGDIEGA---KELFKSTKDKNTGSYN 234
           G+K D++ W+ALI  Y                L+CG          +F++  +K   S  
Sbjct: 2   GNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLG 61

Query: 235 AMISGF----ARF------------------GRFEEARKLFNEMNDKDEITWSAIIDGYT 272
            +I GF      F                  G  E A K+F+ M D++ +TW+ +I  + 
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           + G+ ++A+++F +M      P +F LS V++ACA +G L  G   H  V ++ + +D  
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181

Query: 333 LGTALVDMYAKC---GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD-DAIELFFKM 388
           +G +LVDMYAKC   G +D A KVF+ M +  V +W A+I G    G  D +AIELF +M
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            + +++P+  TF+ VL ACA+   I  G Q    + +M
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 14/275 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q +A+++K      + V  +L+  +  SR  N E A K F+ + + N+  +N+++ A  
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMY--SRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +         L++E+ G  +  N FT+ ++    S   A  +G Q+H+ ++K+G   ++H
Sbjct: 328 KSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLH 387

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           + ++ I MY+  G +  A Q+ ++    +VI W ++I G+ K G    A E F    ++ 
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG 447

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  +Y A++S  +  G   E  K F  M  +  I      ++ ++D   + G+ +EA
Sbjct: 448 VSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEA 507

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +E+ N M     K    VL   L AC   G +D G
Sbjct: 508 MELVNSM---PFKADALVLRTFLGACRVHGNMDLG 539


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/627 (36%), Positives = 344/627 (54%), Gaps = 83/627 (13%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV----FVWNSV 104
           L Q+ A +LKSG    H  S  L +  A S  +   L   +  ++ +P+V    F+ N++
Sbjct: 38  LLQSVAFLLKSGL---HANSLVLTRLFAASASAAPALLDPLVAALLRPSVPLDAFLANTL 94

Query: 105 LRACLE---HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +RA      H+   R  + +  M+     PNKFT+P + KAC+                 
Sbjct: 95  IRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACA----------------- 137

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
             L G   V   G+Q +A           L  G  +D    N LI  Y   G        
Sbjct: 138 -ALPGSPDV---GLQAHAA---------ALKFGFATDQYVSNTLIHMYSCFGG------- 177

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                 G   +AR +F+ M  +  +TWSA+I GY + G   +A+
Sbjct: 178 ----------------------GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAV 215

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           E+F EMQ + ++  +  +  VLAA   LGAL+   W+   V+R  I     L  AL+D  
Sbjct: 216 ELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTL 275

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +D A  VFE M+ + V +W ++I  LAM GR  +A+ +F +M+   + PD + F 
Sbjct: 276 AKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFI 335

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL+AC+HAGM+D G      M+  YGI+P++EHYGC+VD+ GRAG +  A E + +MP+
Sbjct: 336 GVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPI 395

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +PN  +W +L+ ACR HG +E GE + + LL   P +              +R  + +++
Sbjct: 396 QPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEI 455

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ M +RGIK  PG S+++++G +HEF  GD SHPQ K+IY M++++  +L+  G+   +
Sbjct: 456 RREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAAT 515

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           S+VL D+DEE+KE A ++HSEKLAIAF  + T PG  +RV+KNLRVC DCH+A K IS+V
Sbjct: 516 SEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQV 575

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++R+I+VRDR R+H F++G CSC DFW
Sbjct: 576 YRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 318/578 (55%), Gaps = 54/578 (9%)

Query: 131 PNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           P+  T P   K+ S +    + G Q+HA  +K     + HV +S + +YA  G +++A++
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----------------------KD 227
           + D+      + W ALI  Y+  GD+  A  + ++                        D
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 187

Query: 228 KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
             TG                    A +  + + G   +AR++F++M  KD + W A++ G
Sbjct: 188 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 247

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y  +G+ +EAL++F  MQ + +KP  + ++  L+AC  LGALD G      V  +    +
Sbjct: 248 YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            VLGTAL+DMYAKCG    AW VF+ M+ K++  WNAMI GL M G    A  L  +M++
Sbjct: 308 PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 367

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             ++ +  TF  +L +C H G+I  G +    M ++Y I P +EHYGC+VDLL RAG L 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 427

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA +++  MPM  NA +  ALLG C+ H   E  E + K L+ +EP N            
Sbjct: 428 EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 487

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R +D AK+R  MK +G++  P  S ++  G +HEFR GD SHP   +IY  L ++  
Sbjct: 488 NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 547

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GY P +  V+FD+++EEKE    +HSEKLAIAF  + T PG TIRV KNLRVC D
Sbjct: 548 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSD 607

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+A KL+S++  R+IIVRD  R+H FR+G CSCND+W
Sbjct: 608 CHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 43/367 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA  LK     + +V  +L+  +A         A +VF+ +  P+   W +++ A +
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYM 148

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    + +         +P+ FT   V  AC+       G  V     + G+   V 
Sbjct: 149 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 208

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + +Y   G + KAR++ D     D + W A++ GY   G    A +LF + + + 
Sbjct: 209 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG 268

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N     A+I  +A+ G   EA 
Sbjct: 269 MKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 328

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F +M  KD I W+A+I G    G+ K A  +  +M++  +K        +L +C   G
Sbjct: 329 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 388

Query: 311 ALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            +  G  + H+  K   I         +VD+ ++ G L  A ++ +DM M        A+
Sbjct: 389 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 448

Query: 369 IGGLAMH 375
           +GG  +H
Sbjct: 449 LGGCKIH 455


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/716 (33%), Positives = 369/716 (51%), Gaps = 91/716 (12%)

Query: 25  PTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQ--DHYVSGTLVKCHANSRF 80
           P S F   T++ +L    H +   +  ++AHA  LK+G     + +    L+  +A  R 
Sbjct: 159 PLSSF---TLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYA--RL 213

Query: 81  SNFELALKVFNSVHKPN-----VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
              + A  +F SV   +     V  WN+++   ++       I +  +MV    +P+  T
Sbjct: 214 GLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGIT 273

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYACFGCVNKARQILD-- 192
           + +   ACS  E    G ++HA+V+K+  L  +  V S+ + MYA    V  AR++ D  
Sbjct: 274 FASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMV 333

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELF------------------------------ 222
            G    +  WNA++ GY + G  E A ELF                              
Sbjct: 334 PGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFA 393

Query: 223 ----------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                     K     N    NA++  +AR G  E AR +F  +  +D ++W+ +I G  
Sbjct: 394 GKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCV 453

Query: 273 KDGYYKEALEVFNEMQR------------------DKIKPRKFVLSCVLAACASLGALDQ 314
             G+  +A ++  EMQ+                  + + P    L  +L  CA L A  +
Sbjct: 454 VQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAK 513

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH +  R+++  D  +G+ALVDMYAKCG L ++  VF+ +  + V TWN +I    M
Sbjct: 514 GKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGM 573

Query: 375 HGRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           HG  D+AI LF +M    + +P+ +TF   L+AC+H+GM+DRG++    M++ +G+ P  
Sbjct: 574 HGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTP 633

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           + + C VD+LGRAG L EA  +I+SM P E   + W + LGACR H  V  GE   + L 
Sbjct: 634 DLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLF 693

Query: 493 EMEPQNRR-----C---------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           ++EP         C         +  +++R  M++RG+   PG S I+++GVIH F  G+
Sbjct: 694 QLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGE 753

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            +HP+   ++  +  + E+++ +GY+P++S VL DI+E EK    +YHSEKLAIAFG + 
Sbjct: 754 SAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLR 813

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T PGATIRV KNLRVC DCH A K IS++  R+I++RD  R+HHF +G CSC D+W
Sbjct: 814 TPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 155/394 (39%), Gaps = 111/394 (28%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA--------------------- 241
           NAL+  Y +CGD+  A  LF +   ++  ++N++I+                        
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHP 159

Query: 242 --------------------RFGRFEEARKLFNEMNDKDE-ITWSAIIDGYTKDGYYKEA 280
                               R GR   A  L N   D DE   ++A++  Y + G   +A
Sbjct: 160 LSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDA 219

Query: 281 LEVFN------------------------------------EMQRDKIKPRKFVLSCVLA 304
             +F                                     +M    ++P     +  L 
Sbjct: 220 QMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALP 279

Query: 305 ACASLGALDQGIWIHDHVKRNS-ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK--MKE 361
           AC+ L  L  G  +H +V ++S +  ++ + +ALVDMYA   R+ +A +VF+ +    ++
Sbjct: 280 ACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQ 339

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACA-----------H 409
           +  WNAM+ G A  G  ++A+ELF +M+ E  + P   T A VL ACA           H
Sbjct: 340 LGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVH 399

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV-W 468
             ++ RG+    ++Q              ++DL  R G +  A  + ++  +EP   V W
Sbjct: 400 GYVLKRGMADNPFVQN------------ALMDLYARLGDMEAARWIFAA--IEPRDVVSW 445

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
             L+  C   G +    +L +   EM+ Q R  D
Sbjct: 446 NTLITGCVVQGHIHDAFQLVR---EMQQQGRFTD 476



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 43/240 (17%)

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSIC--VDAVLGTALVDMYAKCGRLDMAWKVF 354
           F L     + A+L +L     IH    R  +       +  AL+  YA+CG L  A  +F
Sbjct: 60  FALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALF 119

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA---- 410
             M  ++  T+N++I  L +  R   A++    M  E       T   VL AC+H     
Sbjct: 120 NAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDL 179

Query: 411 -------------GMIDR----GLQALTYM----------QQMYG-IDPE------VEHY 436
                        G +D        AL  M          Q ++G +D        V  +
Sbjct: 180 RLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTW 239

Query: 437 GCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
             +V LL ++G   EA EVI  M    + P+   + + L AC +   +  G  +   +L+
Sbjct: 240 NTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK 299


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/454 (45%), Positives = 290/454 (63%), Gaps = 23/454 (5%)

Query: 221 LFKSTKDKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           + K+  D + G  N M+  +A+ GR     ARK+F+ M +KD ++W+++I  Y ++G   
Sbjct: 219 VVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSA 277

Query: 279 EALEVFNEMQR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           +AL ++ +M      IK     LS +L ACA  G +  G  IH+ V R  +  +  +GT+
Sbjct: 278 DALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTS 337

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           +VDMY+KCGR++MA K F+ +K K + +W+AMI G  MHG   +A+++F +M R    P+
Sbjct: 338 VVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPN 397

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  VL+AC+HAG++D+G      M++ +GI+P VEHYGC+VDLLGRAG L EA  +I
Sbjct: 398 YITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLI 457

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------- 501
             M ++P+AA+W ALL ACR H  VE  E   K L E++  N  C               
Sbjct: 458 KEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATN--CGYYVLLSNIYAEAGM 515

Query: 502 -DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DV +MR L+K RGI+  PG S +++ G  H F  GD SHPQ KEIY  L K++EK++ 
Sbjct: 516 WKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQE 575

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY PN+  VL D+DEEEK +A   HSEKLAIAF  +N+ PG+ I VIKNLRVC DCH+A
Sbjct: 576 AGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTA 635

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KLI+K+ +R+IIVRD  R+HHF++G CSC D+W
Sbjct: 636 IKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 172/380 (45%), Gaps = 63/380 (16%)

Query: 50  KQAHAVILKSGHF-QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H + ++SG F  D + +  L+  H  +  S    A K F+ +  PN  +  ++    
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALL--HMYNHCSRPIDARKAFDEIPSPNPVIITAMASGY 166

Query: 109 LEHNEPWRVISLYSEMVGVDSKPN--------KFTYPTVFKACSITEADKEGVQVHAHVV 160
           + +N  +  ++L+ +++   S            F+       C IT +      +HA VV
Sbjct: 167 VRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSS------LHALVV 220

Query: 161 KNGLCGDVHVKSSGIQMYACFGC--VNKARQILDDGSKSDVICWNALI------------ 206
           K GL GD  V ++ +  YA  G   +  AR++ D   K DV+ WN++I            
Sbjct: 221 KTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADA 279

Query: 207 ----------DGYLKC---------------GDIEGAK----ELFKSTKDKNTGSYNAMI 237
                      G +KC               G I+  K    ++ +   ++N     +++
Sbjct: 280 LGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVV 339

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
             +++ GR E ARK F ++ +K+ ++WSA+I GY   G+ +EAL++FNEM R    P   
Sbjct: 340 DMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYI 399

Query: 298 VLSCVLAACASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
               VLAAC+  G LD+G  W +   KR  I         +VD+  + G LD A+ + ++
Sbjct: 400 TFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKE 459

Query: 357 MKMK-EVFTWNAMIGGLAMH 375
           MK+K +   W A++    +H
Sbjct: 460 MKVKPDAAIWGALLSACRIH 479



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S +A++  +    R  +ARK F+E+   + +  +A+  GY ++     +L +F ++    
Sbjct: 127 SASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASG 186

Query: 292 IKPRKFVLSCVLAACASLGALDQGIW--IHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
                   + ++A  AS    D GI   +H  V +  +  DA +   ++D YAK GR D+
Sbjct: 187 SATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDL 246

Query: 350 --AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR--EKMRPDRITFACVLS 405
             A KVF+ M+ K+V +WN+MI   A +G + DA+ L+ KM      ++ + +T + +L 
Sbjct: 247 GAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILL 305

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG I  G      + +M G++  V     +VD+  + G +  A +    +  E N 
Sbjct: 306 ACAHAGTIQTGKCIHNQVVRM-GLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK-EKNI 363

Query: 466 AVWEALLGACRKHG 479
             W A++     HG
Sbjct: 364 LSWSAMITGYGMHG 377


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 328/610 (53%), Gaps = 63/610 (10%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN  LR     +     ISLY  M+   S P+ F++P + K+C+       G Q+H HV+
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV--ICWNALIDGYLKCGDIEGA 218
           + G   +  V ++ I MY   G V  AR++ ++   S    +C+NALI GY     +  A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 219 KELFKSTKDKNT---------------------------------GSY------NAMISG 239
             +F+  K+                                    G+Y      N+ I+ 
Sbjct: 138 AFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM 197

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G  E  R+LF+EM  K  ITW+A+I GY+++G   + LE+F +M+   + P  F L
Sbjct: 198 YMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTL 257

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL++CA LGA   G  + + V+ N    +  L  AL+ MYA+CG L  A  VF+ M +
Sbjct: 258 VSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPV 317

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K + +W AMIG   MHG  +  + LF  M +  +RPD   F  VLSAC+H+G+ D+GL+ 
Sbjct: 318 KSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 377

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M++ Y ++P  EHY C+VDLLGRAG L EA E I SMP+EP+ AVW ALLGAC+ H 
Sbjct: 378 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHK 437

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            V+  E     ++E EP N              +  + + ++R +M+ER  +  PG S +
Sbjct: 438 NVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 497

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE-EEKETAPK 584
           +  G +H F  GD SH Q +E++ ML + +E   ME  + N      D D  EE  +  +
Sbjct: 498 EHKGKVHLFLAGDRSHEQTEEVHRMLDE-LETSVME-LAGN-----MDCDRGEEVSSTTR 550

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSE+LAIAFG +N+ PG  I VIKNLRVCEDCH   KL+SK+  R  +VRD  R+H+F+
Sbjct: 551 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFK 610

Query: 645 NGKCSCNDFW 654
           +G CSC D+W
Sbjct: 611 DGVCSCKDYW 620



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 4/219 (1%)

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+  +        + E++ ++  M R    P  F    +L +CASL     G  +H HV
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF--TWNAMIGGLAMHGRADD 380
            R     +  + TAL+ MY KCG ++ A KVFE+          +NA+I G   + +  D
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A  +F +M+   +  D +T   ++  C     +  G ++L       G   EV      +
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLG-RSLHGECVKGGTYSEVAVLNSFI 195

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            +  + G +     +   MP++     W A++    ++G
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVK-GLITWNAVISGYSQNG 233


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 339/636 (53%), Gaps = 42/636 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H +   SG   D +V  +LV  H   + +    A +VF+ + +P+V  W++++ A  
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLV--HMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL----- 164
                     L+SEM     +PN  ++  +    + +    E V +   +   G      
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251

Query: 165 --------CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
                    GD+     GI ++           ++  G  SD    +ALID Y KC    
Sbjct: 252 TISSVLPAVGDLEDLVMGILIHG---------YVIKQGLVSDKCVSSALIDMYGKCSCTS 302

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYT 272
              ++F      + GS NA I G +R G+ E + +LF ++ D+    + ++W+++I   +
Sbjct: 303 EMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCS 362

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           ++G   EALE+F EMQ   +KP    + C+L AC ++ AL  G   H    R  I  D  
Sbjct: 363 QNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVY 422

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +G+AL+DMYAKCGR+  +   F+ +  K +  WNA+I G AMHG+A +A+E+F  MQR  
Sbjct: 423 VGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSG 482

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            +PD I+F CVLSAC+ +G+ + G      M   YGI+  VEHY C+V LL RAG L +A
Sbjct: 483 QKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQA 542

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
             +I  MP+ P+A VW ALL +CR H  V  GE   + L E+EP N              
Sbjct: 543 YAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASK 602

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
              ++V ++R +MK +G++ NPG S I+V   +H    GD SHPQ+ +I   L K+  ++
Sbjct: 603 GMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEM 662

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           K  GY P  + VL D++E++KE     HSEKLA+ FG +NT PG  ++VIKNLR+C DCH
Sbjct: 663 KKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCH 722

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              K IS   +R+I VRD  R+HHF+ G CSC D+W
Sbjct: 723 VVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 227/504 (45%), Gaps = 75/504 (14%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
            +SA  +   +  Q TI + LN+    S    +QAHA ILK+G F D +++  L+  +AN
Sbjct: 2   SLSAQALALLDSVQHTIFNCLNSTT-ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           +    F  A  V + V +PNVF +++++ A  + ++    +S +S+M+     P+    P
Sbjct: 61  NMC--FADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLP 118

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +  KAC+   A K   QVH     +G   D  V+SS + MY     +  A ++ D   + 
Sbjct: 119 SAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP 178

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLF 253
           DV+ W+AL+  Y + G ++ AK LF    D     N  S+N MI+GF   G + EA  +F
Sbjct: 179 DVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMF 238

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            +M+          + G+  DG                       +S VL A   L  L 
Sbjct: 239 LDMH----------LRGFEPDGT---------------------TISSVLPAVGDLEDLV 267

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKC----------------------------- 344
            GI IH +V +  +  D  + +AL+DMY KC                             
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327

Query: 345 --GRLDMAWKVFEDMKMK----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
             G+++ + ++F  +K +     V +W +MI   + +GR  +A+ELF +MQ   ++P+ +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSV 387

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T  C+L AC +   +  G  A  +  +  GI  +V     ++D+  + G +  +      
Sbjct: 388 TIPCLLPACGNIAALMHGKAAHCFSLR-RGISTDVYVGSALIDMYAKCGRIQASRICFDG 446

Query: 459 MPMEPNAAVWEALLGACRKHGEVE 482
           +P + N   W A++     HG+ +
Sbjct: 447 IPTK-NLVCWNAVIAGYAMHGKAK 469



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 11/219 (5%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H K AH   L+ G   D YV   L+  +A  +    + +   F+ +   N+  WN+V+  
Sbjct: 404 HGKAAHCFSLRRGISTDVYVGSALIDMYA--KCGRIQASRICFDGIPTKNLVCWNAVIAG 461

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG-VQVHAHVVKNGLCG 166
              H +    + ++  M     KP+  ++  V  ACS +   +EG    ++   K G+  
Sbjct: 462 YAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEA 521

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDG-----YLKCGDIEGAKE 220
            V   +  + + +  G + +A  ++       D   W AL+        +  G++  A++
Sbjct: 522 RVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEV-AAEK 580

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           LF+  +  N G+Y  + + +A  G + E  ++ + M +K
Sbjct: 581 LFE-LEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNK 618


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 342/625 (54%), Gaps = 83/625 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           ++L+Q HA I+ SG  +   +   L+   C A S       A ++F +V  P+ F+++S+
Sbjct: 41  RNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGS----ITYARRLFPTVPNPDSFLFDSL 96

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           L+   +       +  Y  M+   +  + +T+ +V KAC+   A + G ++H+HV+   +
Sbjct: 97  LKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM---V 153

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           CG              +G              SD+    ALI  Y K  D++ AK     
Sbjct: 154 CG--------------YG--------------SDMYVQAALIALYAKASDMKVAK----- 180

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                     K+F+ M  +  I W+++I GY ++G  +E++ +F
Sbjct: 181 --------------------------KVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLF 214

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           + M     +P    +  +L++C+ LGALD G W+HD+   N   ++ VLGT+L++MY +C
Sbjct: 215 HLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRC 274

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +  A +VF+ MK + V TW AMI G  MHG    A+ELF +M+    RP+ ITF  VL
Sbjct: 275 GNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVL 334

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS-MPMEP 463
           SACAH+G+ID G +  + M++ YG+ P VEH  C+VD+ GRAG L +A + I   +P EP
Sbjct: 335 SACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEP 394

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRK 509
             AVW ++LGACR H   + G ++ + +L +EP+N               R D V  +R 
Sbjct: 395 GPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRN 454

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           +M  R +K   G S I++N   + F  GD SHPQ   IY  L +++ +    GY P    
Sbjct: 455 MMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPES 514

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           ++ D++EEE++ A +YHSEKLA+AFG + T+ G TIR++KNLR+CEDCHSA K IS +  
Sbjct: 515 LMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIAD 574

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+IIVRD+ R+HHF++G CSC D+W
Sbjct: 575 REIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 322/557 (57%), Gaps = 76/557 (13%)

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
           N+  + + L+S +     K ++ T  T  KAC       +G Q+HAH +K G   D+HV 
Sbjct: 9   NDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 68

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           S                                ++D Y+KCGD+                
Sbjct: 69  S-------------------------------GILDMYIKCGDM---------------- 81

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
             NA I              +FN ++  D++ W+++I G   +G   +AL +++ M++ +
Sbjct: 82  -VNAGI--------------VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSR 126

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + P ++  + ++ A + + AL+QG  +H +V +     D  +GT+LVDMYAKCG ++ A+
Sbjct: 127 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 186

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           ++F+ M ++ +  WNAM+ GLA HG A++A+ LF  M+   + PDR++F  +LSAC+HAG
Sbjct: 187 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 246

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           +     + L  M   YGI+PE+EHY C+VD LGRAG + EA++VI +MP + +A++  AL
Sbjct: 247 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 306

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           LGACR  G+VE G+R+   L  +EP +               R DDV   RK+MK + +K
Sbjct: 307 LGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVK 366

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
            +PG S IDV  ++H F   D SHPQ   IY  ++++++ ++ +GY P++  VL D+++E
Sbjct: 367 KDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDE 426

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           EKE +  YHSEKLAIA+G I+T    TIRVIKNLRVC DCH+A K ISKVF+R+I++RD 
Sbjct: 427 EKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDA 486

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHFR+G CSC D+W
Sbjct: 487 NRFHHFRDGVCSCGDYW 503



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 165/369 (44%), Gaps = 31/369 (8%)

Query: 50  KQAHAVILKSGHFQD-HYVSGTL---VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           KQ HA  +K+G   D H  SG L   +KC       +   A  VFN +  P+   W S++
Sbjct: 50  KQIHAHAIKAGFDSDLHVNSGILDMYIKC------GDMVNAGIVFNYISAPDDVAWTSMI 103

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
             C+++    + + +Y  M      P+++T+ T+ KA S   A ++G Q+HA+V+K    
Sbjct: 104 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 163

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            D  V +S + MYA  G +  A ++    +  ++  WNA++ G  + G+ E A  LFKS 
Sbjct: 164 SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM 223

Query: 226 K----DKNTGSYNAMISGFARFGRFEEARKLFNEM-ND---KDEIT-WSAIIDGYTKDGY 276
           K    + +  S+  ++S  +  G   EA +  + M ND   + EI  +S ++D   + G 
Sbjct: 224 KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 283

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EA +V   M     K    +   +L AC   G ++ G  +   +       D+     
Sbjct: 284 VQEADKVIETM---PFKASASINRALLGACRIQGDVEXGKRVAARLFALE-PFDSAAYVL 339

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEV-----FTW---NAMIGGLAMHGRADDAIELFFKM 388
           L ++YA   R D      + MK K V     F+W     M+    +  R+    ++ +  
Sbjct: 340 LSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDK 399

Query: 389 QREKMRPDR 397
             E M+  R
Sbjct: 400 VEEMMKTIR 408



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           GY      K+ALE+F+ + +   K  +  L+    AC  L  LDQG  IH H  +     
Sbjct: 4   GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 63

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  + + ++DMY KCG +  A  VF  +   +   W +MI G   +G  D A+ ++ +M+
Sbjct: 64  DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 123

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI-DPEVEHYGCIVDLLGRAGY 448
           + ++ PD  TFA ++ A +    +++G Q    + ++  + DP V     +VD+  + G 
Sbjct: 124 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGN 181

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           + +A  +   M +  N A+W A+L    +HG  E    L K
Sbjct: 182 IEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFK 221



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 119/260 (45%), Gaps = 24/260 (9%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           + +   E++  T+  I  + C T+ +  +Q HA ++K     D +V  +LV  +A  +  
Sbjct: 125 SRVMPDEYTFATL--IKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYA--KCG 180

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N E A ++F  ++  N+ +WN++L    +H      ++L+  M     +P++ ++  +  
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDG 194
           ACS       G+   A+   + +  D  ++   I+ Y+C        G V +A ++++  
Sbjct: 241 ACS-----HAGLTSEAYEYLHSMPNDYGIEPE-IEHYSCLVDALGRAGLVQEADKVIETM 294

Query: 195 S-KSDVICWNALIDGYLKCGDIEGAKEL---FKSTKDKNTGSYNAMISGFARFGRFE--- 247
             K+      AL+      GD+E  K +     + +  ++ +Y  + + +A   R++   
Sbjct: 295 PFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVT 354

Query: 248 EARKLFNEMNDKDEITWSAI 267
           +ARK+    N K +  +S I
Sbjct: 355 DARKMMKRKNVKKDPGFSWI 374



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           M+ G  +      A+ELF  + +   + D+IT A    AC    ++D+G Q   +  +  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA- 59

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           G D ++     I+D+  + G +  A  V + +   P+   W +++  C  +G  +   R+
Sbjct: 60  GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APDDVAWTSMISGCVDNGNEDQALRI 118


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/685 (34%), Positives = 368/685 (53%), Gaps = 63/685 (9%)

Query: 26  TSEFSQKTILDILNTK--CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
            + F   T+L +L +    H  W      HA + K GH  D +V   L+   A S   N 
Sbjct: 134 VNPFVFTTLLKLLVSMDLAHLCWT----LHACVYKLGHHADAFVGTALID--AYSVRGNV 187

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKA 142
           ++A  VF+ +   ++  W  ++ AC   N  +   + L+++M  +  KPN FT     K+
Sbjct: 188 DVARHVFDDICCKDMVSWTGMV-ACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C   EA   G  VH   +K     D+ V  + +++YA  G +  A+++ ++  K+D+I W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 203 NALIDGYLKCGDIEGAKELFKSTK------------------------------------ 226
           + +I  Y +    + A +LF   +                                    
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK 366

Query: 227 ---DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              + N    NA++  +A+ G  E + KLF E+ D++++TW+ II GY + G  + A+ +
Sbjct: 367 FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNL 426

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  M    ++P +   S VL A ASL AL+ G+ IH    +     D V+  +L+DMYAK
Sbjct: 427 FTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAK 486

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CGR++ A   F+ M  ++  +WNAMI G +MHG + +A+ LF  MQ    +P+++TF  V
Sbjct: 487 CGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGV 546

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LSAC++AG++ +G      M + Y I P +EHY C+V LLGR G   EA ++I  +  +P
Sbjct: 547 LSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQP 606

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRK 509
           +  VW ALLGAC  H +V+ G    + +LEMEP +               R D+VA +RK
Sbjct: 607 SVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRK 666

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
            M+++ ++  PG S ++  GV+H F  GD SHP +K I  ML+ + +K +  GY P+ + 
Sbjct: 667 YMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNA 726

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL D+ ++EKE     HSE+LA+A+G I T    +IR+IKNLR+C DCH+  KLISKV +
Sbjct: 727 VLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQ 786

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+I++RD  R+HHFR+G CSC D+W
Sbjct: 787 REIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 205/471 (43%), Gaps = 47/471 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ILK G   D +    L+  +  S  ++ + A K+F+ + + N   + ++ +   
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQS--NSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             ++  + +     +     + N F + T+ K     +       +HA V K G   D  
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I  Y+  G V+ AR + DD    D++ W  ++  Y +    E + +LF   +   
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 230 TGSYNAMISG---------------------------------------FARFGRFEEAR 250
               N  ISG                                       +A+ G   +A+
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +LF EM   D I WS +I  Y +    KEAL++F  M++  + P  F  + VL ACAS  
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +LD G  IH  V +  +  +  +  A++D+YAKCG ++ + K+FE++  +   TWN +I 
Sbjct: 353 SLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIV 412

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQQMYG 428
           G    G  + A+ LF  M    M+P  +T++ VL A A    ++ GLQ  +LT ++ MY 
Sbjct: 413 GYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLT-IKTMYN 471

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            D  V     ++D+  + G + +A      M      + W A++     HG
Sbjct: 472 KDTVVA--NSLIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHG 519


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/486 (42%), Positives = 302/486 (62%), Gaps = 15/486 (3%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
           V+ AR++ +   + + + W A++ GY  CG ++ A ELF +   K+  + NAMI  F + 
Sbjct: 300 VDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQN 359

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR++F++M +KDE TWSA+I  Y + G   +ALE+F  MQR+ I+P    L  VL
Sbjct: 360 GEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVL 419

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + CA L  LD G  IH  + R+   +D  + + L+ MY KCG L  A +VF+   +K+V 
Sbjct: 420 SVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVV 479

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN++I G A HG   +A+ +F  M    + PD +TF  VLSAC++ G + +GL+    M
Sbjct: 480 MWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +  Y ++ ++EHY C+VDLLGRAG L EA ++I  MPME +A +W ALLGACR H +++ 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E   K LL +EP+N               R DDVA++R+ M++R +   PG S I V  
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEK 659

Query: 530 VIHEFRTGDGS-HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
            +H+F  GD S HP+  EI  +L+ +   L+  GY P+ S VL D+DEEEK  + +YHSE
Sbjct: 660 KVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSE 719

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLA+A+G +    G  IRV+KNLRVC DCH+A KLI+KV  R+II+RD  R+HHF++G C
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 780 SCRDYW 785



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 193/429 (44%), Gaps = 72/429 (16%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR    E A  VF+ +   N+  WNS++    ++  P    +++ +M    S+ N  ++ 
Sbjct: 109 SRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISW- 163

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
                                   NGL          +  Y   G +N+AR++ D   + 
Sbjct: 164 ------------------------NGL----------VSGYINNGMINEAREVFDRMPER 189

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           +V+ W A++ GY+K G I  A+ LF    +KN  S+  M+ G  + GR +EA +LF+ M 
Sbjct: 190 NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP 249

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-------------------------KI 292
           +KD +T + +I GY + G   EA  +F+EM R                          ++
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEV 309

Query: 293 KPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            P K  +S   +L    + G LD+   + + +   S+    V   A++  + + G +  A
Sbjct: 310 MPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKA 365

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            +VF+ M+ K+  TW+AMI      G   DA+ELF  MQRE +RP+  +   VLS CA  
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             +D G +    + +    D +V     ++ +  + G LA+A++V     ++ +  +W +
Sbjct: 426 ANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNS 483

Query: 471 LLGACRKHG 479
           ++    +HG
Sbjct: 484 IITGYAQHG 492



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 175/380 (46%), Gaps = 48/380 (12%)

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
           ++S I  Y+  G + KAR + D+    ++I WN+++ GY +    + A+ +F    ++NT
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT 160

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S+N ++SG+   G   EAR++F+ M +++ ++W+A++ GY K+G   EA  +F +M   
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM--- 217

Query: 291 KIKPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              P K V+S   +L      G +D+   + D +       D V  T ++  Y + GRL 
Sbjct: 218 ---PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGRLV 270

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  +F++M  + V +W  MI G   + + D A +LF  M  +    + +++  +L    
Sbjct: 271 EARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYT 326

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           + G +D   +    M       P      C  ++   G+ G + +A +V   M  E +  
Sbjct: 327 NCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEG 378

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS--SM 524
            W A++    + G            LE+        D  ++ ++M+  GI+ N  S  S+
Sbjct: 379 TWSAMIKVYERKG------------LEL--------DALELFRMMQREGIRPNFPSLISV 418

Query: 525 IDVNGVIHEFRTGDGSHPQV 544
           + V   +     G   H Q+
Sbjct: 419 LSVCAGLANLDHGREIHAQL 438



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 142/322 (44%), Gaps = 47/322 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF+ + + +   W+++++           + L+  M     +PN  +  +V   C+ 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G ++HA +V++    DV+V S  + MY   G + KA+Q+ D  +  DV+ WN++
Sbjct: 425 LANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSI 484

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DE 261
           I GY                               A+ G   EA ++F++M+      D+
Sbjct: 485 ITGY-------------------------------AQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
           +T+  ++   +  G  K+ LE+FN M+ + +++ +    +C++      G L++ +   D
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM---D 570

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDM---AWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
            +++  +  DA++  AL+       +LD+   A K    ++ K    +  +    A  GR
Sbjct: 571 LIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGR 630

Query: 378 ADDAIELFFKMQREKMRPDRIT 399
            DD  EL     R  MR  R++
Sbjct: 631 WDDVAEL-----RRNMRDRRVS 647



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 19/223 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H ++ HA +++S    D YV+  L+  +   +  N   A +VF+     +V +WNS++  
Sbjct: 430 HGREIHAQLVRSQFDLDVYVASVLLSMYI--KCGNLAKAKQVFDRFAVKDVVMWNSIITG 487

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +H      + ++ +M      P+  T+  V  ACS T   K+G+++      N +   
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF-----NSMETK 542

Query: 168 VHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG---YLKCGDIE 216
             V+   I+ YAC        G +N+A  +++    ++D I W AL+     ++K    E
Sbjct: 543 YQVEQK-IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAE 601

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            A +     + KN G +  + + +A  GR+++  +L   M D+
Sbjct: 602 VAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/517 (41%), Positives = 314/517 (60%), Gaps = 20/517 (3%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +HA +VK GL     V ++ IQ YA  G V+ AR++ D  S  D + +N++I  +   GD
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           +  A+ LF+        ++ +M++G  R G    AR+LF EM  +D ++W+A++ G   +
Sbjct: 91  VVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGN 150

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV--DAV 332
               EAL +F  M  +   P +  +   LAACA  GAL+ G WIH  V+R  +    D  
Sbjct: 151 RRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEF 210

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           LGTAL+DMYAKCG +++A  VF  ++ +   TWNAMI GLAM+G +  A+++F KM+ ++
Sbjct: 211 LGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDR 270

Query: 393 -MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            + PD +TF  VL AC+H G +D G +    +++ YGI   +EHY C+VDLL R+G+L E
Sbjct: 271 TVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQE 330

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A ++I+ MPM+P+A VW ALLG CR H +V+  E     + EME                
Sbjct: 331 AHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAE---TAISEMEATCSGDHVLLSNLYAA 387

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R   V  +R+ M+ +GI+  PG S I++N  IHEF +GD SHP   +I+  L +I  +
Sbjct: 388 VGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISAR 447

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ +GY   +++V +D++EEEKE A  +HSEKLAIAFG I   P   IR++KNLR C DC
Sbjct: 448 MQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADC 507

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H   KL+S+++  +I+VRDR R+HHF  G CSCNDFW
Sbjct: 508 HKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 65/301 (21%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  +   A ++F  +   ++  WN+++     +  P   + L+  M+     PN+ T  +
Sbjct: 118 RAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLS 177

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              AC+   A + G  +HA V +  L                                 D
Sbjct: 178 ALAACAGAGALETGKWIHAFVERKRLF-----------------------------RWWD 208

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
                AL+D Y KCG +E A ++F   + +NT ++NAMI+G A              MN 
Sbjct: 209 EFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLA--------------MN- 253

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIW 317
                           GY  +AL++F +M+ D+ + P +     VL AC+  G +D G  
Sbjct: 254 ----------------GYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGR- 296

Query: 318 IHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM 374
            H H+      +  +L     +VD+ A+ G L  A K+   M MK +   W A++GG  +
Sbjct: 297 EHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRL 356

Query: 375 H 375
           H
Sbjct: 357 H 357


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/486 (42%), Positives = 302/486 (62%), Gaps = 15/486 (3%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
           V+ AR++ +   + + + W A++ GY  CG ++ A ELF +   K+  + NAMI  F + 
Sbjct: 300 VDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQN 359

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR++F++M +KDE TWSA+I  Y + G   +ALE+F  MQR+ I+P    L  VL
Sbjct: 360 GEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVL 419

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + CA L  LD G  IH  + R+   +D  + + L+ MY KCG L  A +VF+   +K+V 
Sbjct: 420 SVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVV 479

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN++I G A HG   +A+ +F  M    + PD +TF  VLSAC++ G + +GL+    M
Sbjct: 480 MWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSM 539

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +  Y ++ ++EHY C+VDLLGRAG L EA ++I  MPME +A +W ALLGACR H +++ 
Sbjct: 540 ETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDL 599

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E   K LL +EP+N               R DDVA++R+ M++R +   PG S I V  
Sbjct: 600 AEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEK 659

Query: 530 VIHEFRTGDGS-HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
            +H+F  GD S HP+  EI  +L+ +   L+  GY P+ S VL D+DEEEK  + +YHSE
Sbjct: 660 KVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSE 719

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLA+A+G +    G  IRV+KNLRVC DCH+A KLI+KV  R+II+RD  R+HHF++G C
Sbjct: 720 KLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSC 779

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 780 SCRDYW 785



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 193/429 (44%), Gaps = 72/429 (16%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR    E A  VF+ +   N+  WNS++    ++  P    +++ +M    S+ N  ++ 
Sbjct: 109 SRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISW- 163

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
                                   NGL          +  Y   G +N+AR++ D   + 
Sbjct: 164 ------------------------NGL----------VSGYINNGMINEAREVFDRMPER 189

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           +V+ W A++ GY+K G I  A+ LF    +KN  S+  M+ G  + GR +EA +LF+ M 
Sbjct: 190 NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP 249

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-------------------------KI 292
           +KD +T + +I GY + G   EA  +F+EM R                          ++
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEV 309

Query: 293 KPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            P K  +S   +L    + G LD+   + + +   S+    V   A++  + + G +  A
Sbjct: 310 MPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKA 365

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            +VF+ M+ K+  TW+AMI      G   DA+ELF  MQRE +RP+  +   VLS CA  
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             +D G +    + +    D +V     ++ +  + G LA+A++V     ++ +  +W +
Sbjct: 426 ANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNS 483

Query: 471 LLGACRKHG 479
           ++    +HG
Sbjct: 484 IITGYAQHG 492



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 175/380 (46%), Gaps = 48/380 (12%)

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
           ++S I  Y+  G + KAR + D+    ++I WN+++ GY +    + A+ +F    ++NT
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT 160

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S+N ++SG+   G   EAR++F+ M +++ ++W+A++ GY K+G   EA  +F +M   
Sbjct: 161 ISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM--- 217

Query: 291 KIKPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              P K V+S   +L      G +D+   + D +       D V  T ++  Y + GRL 
Sbjct: 218 ---PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGRLV 270

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  +F++M  + V +W  MI G   + + D A +LF  M  +    + +++  +L    
Sbjct: 271 EARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYT 326

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           + G +D   +    M       P      C  ++   G+ G + +A +V   M  E +  
Sbjct: 327 NCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEG 378

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS--SM 524
            W A++    + G            LE+        D  ++ ++M+  GI+ N  S  S+
Sbjct: 379 TWSAMIKVYERKG------------LEL--------DALELFRMMQREGIRPNFPSLISV 418

Query: 525 IDVNGVIHEFRTGDGSHPQV 544
           + V   +     G   H Q+
Sbjct: 419 LSVCAGLANLDHGREIHAQL 438



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 142/322 (44%), Gaps = 47/322 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF+ + + +   W+++++           + L+  M     +PN  +  +V   C+ 
Sbjct: 365 ARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G ++HA +V++    DV+V S  + MY   G + KA+Q+ D  +  DV+ WN++
Sbjct: 425 LANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSI 484

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DE 261
           I GY                               A+ G   EA ++F++M+      D+
Sbjct: 485 ITGY-------------------------------AQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
           +T+  ++   +  G  K+ LE+FN M+ + +++ +    +C++      G L++ +   D
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM---D 570

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDM---AWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
            +++  +  DA++  AL+       +LD+   A K    ++ K    +  +    A  GR
Sbjct: 571 LIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGR 630

Query: 378 ADDAIELFFKMQREKMRPDRIT 399
            DD  EL     R  MR  R++
Sbjct: 631 WDDVAEL-----RRNMRDRRVS 647



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 19/223 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H ++ HA +++S    D YV+  L+  +   +  N   A +VF+     +V +WNS++  
Sbjct: 430 HGREIHAQLVRSQFDLDVYVASVLLSMYI--KCGNLAKAKQVFDRFAVKDVVMWNSIITG 487

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +H      + ++ +M      P+  T+  V  ACS T   K+G+++      N +   
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF-----NSMETK 542

Query: 168 VHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG---YLKCGDIE 216
             V+   I+ YAC        G +N+A  +++    ++D I W AL+     ++K    E
Sbjct: 543 YQVEQK-IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAE 601

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            A +     + KN G +  + + +A  GR+++  +L   M D+
Sbjct: 602 VAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 333/570 (58%), Gaps = 35/570 (6%)

Query: 10  LPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY--V 67
           LPH   P ++S              L  L T C  S + LKQ HA I+K+    D    +
Sbjct: 29  LPHDFNPHKLS-------------FLSTLQT-CK-SIKGLKQIHASIIKTMPSPDAQLTI 73

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-CLEHNEPWRVISLYSEMVG 126
           S  L    A S   +   AL +   +  PN+ ++N+++R     +N+    + +Y +M+ 
Sbjct: 74  STRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLS 133

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
               P+ +T P V KAC+ + A +EG +VH   +K GL  DV+V ++ ++MYA    +  
Sbjct: 134 KGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRS 193

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDI-EGAKELFKSTKDKNTGSY--NAMISGFARF 243
           AR++ D   + D++ W  +I GY+K G   EG         + N   +  NA++  + + 
Sbjct: 194 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKC 253

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G    ARK+F EM  K+ ++W+++I G  + G +KE+L +F +MQR  +KP    L  VL
Sbjct: 254 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 313

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            +CA+LG L+ G W+H ++ RN I  D  +G ALVDMYAKCG +D A  VF+ M  K+V+
Sbjct: 314 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 373

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           ++ AMI GLAMHG+   A++LF +M +  + PD +TF  VL+AC+H G+++ G +    M
Sbjct: 374 SYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM 433

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
             +Y + P++EHYGC+VDLLGRAG + EAEE I +MP+EP+A V  ALLGAC+ HG+VE 
Sbjct: 434 STIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVEL 493

Query: 484 GERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GE + K + ++EP+                R  D  K+RK MKER ++  PG S I+++G
Sbjct: 494 GESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDG 553

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           VIHEF+ GD SHP++KEIY +L +I+  LK
Sbjct: 554 VIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 333/619 (53%), Gaps = 43/619 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H   ++ G   D  +   L+  +   R S  E A  VF  +   +V  W S+    +
Sbjct: 98  KRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS--EGARLVFEGMPFRDVISWTSMASCYV 155

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   +  + +M     +PN  T  ++  AC+  +  K G +VH  VV+NG+ G+V 
Sbjct: 156 NCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVF 215

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+ + MYA    + +A+ + D  S+ D + WN LI  Y    + E             
Sbjct: 216 VSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECE------------- 262

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                    G + FGR      + +E    +  +W+A+I G  ++G  ++ALEV + MQ 
Sbjct: 263 --------KGLSVFGR------MMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
              KP +  ++ VL AC +L +L  G  IH ++ R+    D    TALV MYAKCG L++
Sbjct: 309 SGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLEL 368

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           + +VF  M  ++  +WN MI   +MHG  ++A+ LF +M    +RP+ +TF  VLS C+H
Sbjct: 369 SRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSH 428

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           + ++D GL     M + + ++P+ +H+ C+VD+L RAG L EA E I  MP+EP A  W 
Sbjct: 429 SRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWG 488

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERG 515
           ALLG CR +  VE G      L E+E  N              +   + ++ RKLM++RG
Sbjct: 489 ALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRG 548

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           +  NPG S I V   +H F  GD S+ Q  EIY  L  + EK+++ GY PN+  VL D+D
Sbjct: 549 VTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVD 608

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           +EEKE     HSEKLA+AFG +N +  ++IRV KNLR+C DCH+A K ++K+    IIVR
Sbjct: 609 QEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVR 668

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D +R+HHFR+G CSC DFW
Sbjct: 669 DSLRFHHFRDGLCSCQDFW 687



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 34/280 (12%)

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPR 295
           I  ++  G  + AR LF+++   D  TW+ +I   TK G   EA++ +N+ + ++ ++P 
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           K +L  V  ACASL  +     +H+   R   C D +LG AL+DMY KC   + A  VFE
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA------- 408
            M  ++V +W +M       G   +A+  F KM     RP+ +T + +L AC        
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 409 ----HAGMIDRGLQALTYMQ----QMYGIDPEVEHYGCIVDLLGR----------AGYLA 450
               H  ++  G+    ++      MY     +     + D + R            Y  
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257

Query: 451 EAE-----EVISSMPMEP---NAAVWEALLGACRKHGEVE 482
             E      V   M  E    N A W A++G C ++G  E
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 20/163 (12%)

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           L    + +Y+  G L  A  +F+ +   ++ TW  +I  L  HGR+ +AI+ +   + + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 393 -MRPDRITFACVLSACAHAGMIDRGLQALTYMQQ---MYGIDPEVEHYGCIVDLLGRAGY 448
            + PD++    V  ACA      R +     + +    +G   +V     ++D+ G+   
Sbjct: 73  CVEPDKLLLLSVAKACASL----RDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRC 128

Query: 449 LAEAEEVISSMPMEP------------NAAVWEALLGACRKHG 479
              A  V   MP               N  +    LGA RK G
Sbjct: 129 SEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMG 171


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/664 (34%), Positives = 358/664 (53%), Gaps = 94/664 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV------KCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           KQ HA  +K+    + +V   LV      KC   + +  FELA        K N  +W +
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL-FELAPD------KRNHVLWTA 210

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    ++ +  + I  + +M G   + N+FT+P++  AC    A   G QVH  +V++G
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG 270

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              +V V S+ + MY+  G ++ AR++L+     D + WN++I G ++ G  E A  LF+
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFR 330

Query: 224 STKDK-------------NTGSY--------------------------NAMISGFARFG 244
               +             N  S+                          NA++  +A+ G
Sbjct: 331 IMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRG 390

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
            F+ A  +F +M DKD I+W++++ G   +G Y+EAL +F EM+   I P + V++ VL+
Sbjct: 391 YFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLS 450

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           ACA L  L+ G  +H +  ++ +     +  +LV MYAKCG ++ A KVF+ M++++V T
Sbjct: 451 ACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVIT 510

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W A+I G A +GR  D                            HAG+++ G      M+
Sbjct: 511 WTALIVGYAQNGRGRD----------------------------HAGLVEHGRSYFQSME 542

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           ++YGI P  EHY C++DLLGR+G L EA+E+++ M ++P+A VW+ALL ACR HG VE G
Sbjct: 543 EVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELG 602

Query: 485 ERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           ER    L E+EP+N               + ++ AK R+LMK RG+   PG S I+++  
Sbjct: 603 ERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSK 662

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F + D SHP+  EIY  + +I+  +K  GY P+ +  L D+DEE KE    YHSEKL
Sbjct: 663 VHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKL 722

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           A+AFG +   PGA IR+ KNLR+C DCH+A K +S VF R +I+RD   +HHFR G CSC
Sbjct: 723 AVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSC 782

Query: 651 NDFW 654
           +D+W
Sbjct: 783 SDYW 786



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 227/500 (45%), Gaps = 60/500 (12%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           T++  +ANS       A K+F      +   W+S++     +      + L+ EM     
Sbjct: 77  TMIGAYANS--GRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGE 134

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +PN+FT+ +V + CS+    ++G Q+HAH +K     +  V +  + MYA   C+ +A  
Sbjct: 135 RPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194

Query: 190 ILDDG-SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-------------------- 228
           + +    K + + W A++ GY + GD   A E F+  + +                    
Sbjct: 195 LFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSIS 254

Query: 229 -------------------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                              N    +A++  +++ G    AR++   M   D ++W+++I 
Sbjct: 255 ACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIV 314

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G  + G  +EAL +F  M    +K  +F    VL   + +  +   + +H  + +     
Sbjct: 315 GCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEA 374

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
             ++  ALVDMYAK G  D A+ VFE M  K+V +W +++ G   +G  ++A+ LF +M+
Sbjct: 375 YKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMR 434

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              + PD+I  A VLSACA   +++ G Q    +++   G    V++   +V +  + G 
Sbjct: 435 IMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDN--SLVSMYAKCGC 492

Query: 449 LAEAEEVISSMPMEPNAAVWEALL------GACRKH-GEVEFGERLGKILLEME-----P 496
           + +A +V  SM ++ +   W AL+      G  R H G VE G    + + E+      P
Sbjct: 493 IEDANKVFDSMEIQ-DVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGP 551

Query: 497 QNRRC--DDVAKMRKLMKER 514
           ++  C  D + +  KLM+ +
Sbjct: 552 EHYACMIDLLGRSGKLMEAK 571



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 147/290 (50%), Gaps = 3/290 (1%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N ++    KCG ++ A++LF    D++  S+N MI  +A  GR  EARKLF E   +  I
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           TWS++I GY + G   EALE+F EMQ +  +P +F    VL  C+    L++G  IH H 
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRADDA 381
            +     +A + T LVDMYAKC  +  A  +FE    K     W AM+ G + +G    A
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           IE F  M+ E +  ++ TF  +L+AC        G Q    + +  G    V     +VD
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVD 283

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           +  + G L+ A  ++ +M ++ +   W +++  C + G  E    L +I+
Sbjct: 284 MYSKCGDLSNARRMLETMEVD-DPVSWNSMIVGCVRQGLGEEALSLFRIM 332


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/627 (36%), Positives = 344/627 (54%), Gaps = 83/627 (13%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV----FVWNSV 104
           L Q+ A +LKSG    H  S  L +  A S  +   L   +  ++ +P+V    F+ N++
Sbjct: 38  LLQSVAFLLKSGL---HANSLVLTRLFAASASAAPALLDPLVTALLRPSVPLDAFLANTL 94

Query: 105 LRACLE---HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +RA      H+   R  + +  M+     PNKFT+P + KAC+                 
Sbjct: 95  IRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACA----------------- 137

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
             L G   V   G+Q +A           L  G  +D    N LI  Y   G        
Sbjct: 138 -ALPGSPDV---GLQAHAA---------ALKFGFATDQYVSNTLIHMYSCFGG------- 177

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                                 G   +AR +F+ M  +  +TWSA+I GY + G   +A+
Sbjct: 178 ----------------------GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAV 215

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           ++F EMQ + ++  +  +  VLAA   LGAL+   W+   V+R  I     L  AL+D  
Sbjct: 216 DLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTL 275

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           AKCG +D A  VFE M+ + V +W ++I  LAM GR  +A+ +F +M+   + PD + F 
Sbjct: 276 AKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFI 335

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL+AC+HAGM+D G      M+  YGI+P++EHYGC+VD+ GRAG +  A E + +MP+
Sbjct: 336 GVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPI 395

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKM 507
           +PN  +W +L+ ACR HG +E GE + + LL   P +              +R  + +++
Sbjct: 396 QPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEI 455

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           R+ M +RGIK  PG S+++++G +HEF  GD SHPQ K+IY M++++  +L+  G+   +
Sbjct: 456 RREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAAT 515

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           S+VL D+DEE+KE A ++HSEKLAIAF  + T PG  +RV+KNLRVC DCH+A K IS+V
Sbjct: 516 SEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQV 575

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++R+I+VRDR R+H F++G CSC DFW
Sbjct: 576 YRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 321/583 (55%), Gaps = 54/583 (9%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+ +  +P+ FT+P + KACS     + G+++H  VVK G    V + +S I MY     
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-----STKDKNTGSYNAMI- 237
              +RQ+ D+    + + W+A+I   L+    +    LF+      ++       NAM  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 238 ------------------------------SGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                                           FAR GR E ARKLF+ +  KD +TW+  
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I+ Y K     EAL +  +M    I P    L  V+ AC++L +      +H  +     
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT-TGF 239

Query: 328 CVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
             + +L   TAL+D+Y KCG L  A KVF+ M+ + + TW+AMI G  MHG   +A+ LF
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M +  ++PD ITF  +LSAC+H+G++  G +    M + +G+ P  EHY C+VD+LGR
Sbjct: 300 DQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG L EA + I  MP+ PNAAVW ALLGACR H  V+  E + + L +++P N       
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   +  +   +R LMK RG+K   G S+I++   ++ F  GD SHPQ   IY  L
Sbjct: 419 YNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSEL 478

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           ++++++++ EGY+P+ + VL D+DEE KE+    HSEKLAI FG +N  PG+ IR+ KNL
Sbjct: 479 ERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNL 538

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVC DCH+ATK ISKV  R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 539 RVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 170/371 (45%), Gaps = 48/371 (12%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++K G+    ++S +L+  +   +   +EL+ +VF+ +   N   W++++ ACL+ +
Sbjct: 33  HQDVVKFGYQSQVFISNSLITMYG--KCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDD 90

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                 SL+ +M+   S+P++     +  A +   + +E   V+  VV+NGL  D  V+S
Sbjct: 91  RCKEGFSLFRQMLSEGSRPSR---GAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQS 147

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC----------------GDIE 216
           +   M+A  G V  AR++ D     D++ W   I+ Y+K                 G   
Sbjct: 148 AAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFP 207

Query: 217 GAKELFKSTKDKNTGS-----------------YN-------AMISGFARFGRFEEARKL 252
            A  L    +  +T +                 YN       A+I  + + G    ARK+
Sbjct: 208 DAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKV 267

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F+ M +++ ITWSA+I GY   G+ +EAL +F++M +  +KP       +L+AC+  G +
Sbjct: 268 FDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLV 326

Query: 313 DQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIG 370
            +G    + + R+  +         +VD+  + G+LD A    E M ++     W A++G
Sbjct: 327 AEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLG 386

Query: 371 GLAMHGRADDA 381
              +H   D A
Sbjct: 387 ACRIHLNVDLA 397



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 44/319 (13%)

Query: 27  SEFSQKTILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           SE S+ +   ILN   C  S +     + V++++G   D  V        A  R    E+
Sbjct: 104 SEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFA--RCGRVEV 161

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A K+F+ +   ++  W + + A ++ + P   + L  +M+     P+  T   V +ACS 
Sbjct: 162 ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACST 221

Query: 146 TEADKEGVQVHAHVVKNGLCGD--VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
             + +    VH  ++  G   +  + V+++ I +Y   G +  AR++ D   + ++I W+
Sbjct: 222 LASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWS 280

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN---DKD 260
           A+I GY                             G   +GR  EA  LF++M      D
Sbjct: 281 AMISGY-----------------------------GMHGWGR--EALNLFDQMKASVKPD 309

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIH 319
            IT+ +I+   +  G   E  E FN M RD  + PR    +C++      G LD+     
Sbjct: 310 HITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEAC--- 366

Query: 320 DHVKRNSICVDAVLGTALV 338
           D ++R  +  +A +  AL+
Sbjct: 367 DFIERMPVRPNAAVWGALL 385


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 326/574 (56%), Gaps = 57/574 (9%)

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           F   T+FK  +I +      QVHA V   G+  D+ V +  + M A    +  A  + + 
Sbjct: 5   FFISTLFKCRNIFQIK----QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNK 60

Query: 194 GSKSDVICWNALIDGYLKCGDIE------------GAK---------------------- 219
             + D + W+ +I G++K GD E            G+K                      
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120

Query: 220 ELFKSTKDKNTGSYN-----AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
            L  ST  KN    +      ++  +A+ G  + A++LF+ M  KD +T + +I GY + 
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   E+  +F++M+RD   P K  +  ++ ACA LGA+++   +HD+V      +D  LG
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TA++DMYAKCG +D + ++F+ M+ K V +W+AMIG    HG+  +A+ELF  M    + 
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGII 300

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+RITF  +L AC+HAG++D GLQ  + M   YG+ P+V+HY C+VDLLGRAG L +A  
Sbjct: 301 PNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALR 360

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           +I +M +E +  +W A LGACR H +V+  E+  K+LL ++ QN               R
Sbjct: 361 LIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGR 420

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DVAK+R LM +R +K  PG + I+V+ +I+ F  GD SH +  EIY MLK + +KL+ 
Sbjct: 421 WKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLES 480

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY P+++ VL D+DEE K      HSEKLAIAFG I T  G  IR+ KNLRVC DCHS 
Sbjct: 481 AGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSF 540

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KL+S + +RDIIVRD  R+HHF+ G CSC D+W
Sbjct: 541 CKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 186/395 (47%), Gaps = 47/395 (11%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC   +Q +KQ HA +  +G   D  V+  L+  +  ++  +   A  +FN + + +   
Sbjct: 12  KCRNIFQ-IKQVHAQVTTTGIIHDLIVANKLL--YMCAKHKDLVTAHLLFNKMEERDPVS 68

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W+ ++   +++ +  R    + E++   SKP+ F+ P V KAC  T     G  +H+ V+
Sbjct: 69  WSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVL 128

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           KNGL  D  V S+ + MYA  G ++ A+Q+ D   K D++    +I GY +CG    +  
Sbjct: 129 KNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWV 188

Query: 221 LFKSTK------DK-----------NTGSYN----------------------AMISGFA 241
           LF   +      DK             G+ N                      AMI  +A
Sbjct: 189 LFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYA 248

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G  + +R++F+ M  K+ I+WSA+I  Y   G  +EALE+F+ M    I P +     
Sbjct: 249 KCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFIS 308

Query: 302 VLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM- 359
           +L AC+  G +D G+ +   +  +  +  D    T +VD+  + GRLD A ++ E+M++ 
Sbjct: 309 LLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVE 368

Query: 360 KEVFTWNAMIGGLAMHGRAD---DAIELFFKMQRE 391
           K+   W A +G   +H + D    A +L   +Q +
Sbjct: 369 KDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ 403


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 318/578 (55%), Gaps = 54/578 (9%)

Query: 131  PNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P+  T P   K+ S +    + G Q+HA  +K     + HV +S + +YA  G +++A++
Sbjct: 523  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 190  ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----------------------KD 227
            + D+      + W ALI  Y+  GD+  A  + ++                        D
Sbjct: 583  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642

Query: 228  KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
              TG                    A +  + + G   +AR++F++M  KD + W A++ G
Sbjct: 643  LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 702

Query: 271  YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            Y  +G+ +EAL++F  MQ + +KP  + ++  L+AC  LGALD G      V  +    +
Sbjct: 703  YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 762

Query: 331  AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             VLGTAL+DMYAKCG    AW VF+ M+ K++  WNAMI GL M G    A  L  +M++
Sbjct: 763  PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 822

Query: 391  EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
              ++ +  TF  +L +C H G+I  G +    M ++Y I P +EHYGC+VDLL RAG L 
Sbjct: 823  SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 882

Query: 451  EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
            EA +++  MPM  NA +  ALLG C+ H   E  E + K L+ +EP N            
Sbjct: 883  EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 942

Query: 500  ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
               R +D AK+R  MK +G++  P  S ++  G +HEFR GD SHP   +IY  L ++  
Sbjct: 943  NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 1002

Query: 557  KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
            ++K  GY P +  V+FD+++EEKE    +HSEKLAIAF  + T PG TIRV KNLRVC D
Sbjct: 1003 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSD 1062

Query: 617  CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            CH+A KL+S++  R+IIVRD  R+H FR+G CSCND+W
Sbjct: 1063 CHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 43/367 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA  LK     + +V  +L+  +A         A +VF+ +  P+   W +++ A +
Sbjct: 546 EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYM 603

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    + +         +P+ FT   V  AC+       G  V     + G+   V 
Sbjct: 604 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 663

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + +Y   G + KAR++ D     D + W A++ GY   G    A +LF + + + 
Sbjct: 664 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG 723

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N     A+I  +A+ G   EA 
Sbjct: 724 MKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 783

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F +M  KD I W+A+I G    G+ K A  +  +M++  +K        +L +C   G
Sbjct: 784 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 843

Query: 311 ALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            +  G  + H+  K   I         +VD+ ++ G L  A ++ +DM M        A+
Sbjct: 844 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 903

Query: 369 IGGLAMH 375
           +GG  +H
Sbjct: 904 LGGCKIH 910


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/595 (36%), Positives = 338/595 (56%), Gaps = 51/595 (8%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTY 136
           +    +LA+  F  + + ++  WNS++    +     R + ++S+M+  DS   P++FT 
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLR-DSLLSPDRFTL 282

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            +V  AC+  E    G Q+H+H+V  G   D+    SGI +                   
Sbjct: 283 ASVLSACANLEKLCIGKQIHSHIVTTGF--DI----SGIVL------------------- 317

Query: 197 SDVICWNALIDGYLKCGDIEGAKELF--KSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
                 NALI  Y +CG +E A+ L   + TKD     + A++ G+ + G   +A+ +F 
Sbjct: 318 ------NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFV 371

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            + D+D + W+A+I GY + G Y EA+ +F  M     +P  + L+ +L+  +SL +L  
Sbjct: 372 SLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSH 431

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLA 373
           G  IH    ++       +  AL+ MYAK G +  A + F+ ++  ++  +W +MI  LA
Sbjct: 432 GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALA 491

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG A++A+ELF  M  E +RPD IT+  V SAC HAG++++G Q    M+ +  I P +
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            HY C+VDL GRAG L EA+E I  MP+EP+   W +LL ACR H  ++ G+   + LL 
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EP+N               + ++ AK+RK MK+  +K   G S I+V   +H F   DG
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           +HP+  EIY+ +KKI +++K  GY P+++ VL D++EE KE   ++HSEKLAIAFG I+T
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
               T+R++KNLRVC DCH+A K ISK+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/508 (23%), Positives = 210/508 (41%), Gaps = 105/508 (20%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++KSG     Y+   L+  ++ + ++    A K+F+ +     F WN+VL A  +  
Sbjct: 37  HCRVIKSGLMFSVYLMNNLMNVYSKTGYALH--ARKLFDEMPLRTAFSWNTVLSAYSKRG 94

Query: 113 E-----------------PW--------------RVISLYSEMVGVDSKPNKFTYPTVFK 141
           +                  W              + I +  +MV    +P +FT   V  
Sbjct: 95  DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           + + T   + G +VH+ +VK GL G+V V +S + MYA  G    A+ + D     D+  
Sbjct: 155 SVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISS 214

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           WNA+I  +++ G ++ A   F+   +++  ++N+MISGF                     
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGF--------------------- 253

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHD 320
                      + GY   AL++F++M RD  + P +F L+ VL+ACA+L  L  G  IH 
Sbjct: 254 ----------NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWK---------------------------- 352
           H+      +  ++  AL+ MY++CG ++ A +                            
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 353 -----VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
                +F  +K ++V  W AMI G   HG   +AI LF  M     RP+  T A +LS  
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423

Query: 408 AHAGMIDRGLQ---ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +    +  G Q   +     ++Y +         ++ +  +AG +  A      +  E +
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGNITSASRAFDLIRCERD 479

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILL 492
              W +++ A  +HG  E    L + +L
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETML 507


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 342/625 (54%), Gaps = 57/625 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKAC 143
           A +VF+ +   +   WN+V+     +  P   +     M G +   +P+  T  +V  AC
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           +   A     +VHA  ++ GL   V+V ++ +  Y   G V  AR + D     + + WN
Sbjct: 130 ADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWN 189

Query: 204 ALIDGYLKCGDIEGAKELF---------------------------------------KS 224
           A+IDGY   G+   A  LF                                       + 
Sbjct: 190 AMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRV 249

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEM-NDKDEITWSAIIDGYTKDGYYKEALEV 283
               N    NA+I+ +A+  R + A ++FNE+ N K  I+W+A+I G+T++   ++A  +
Sbjct: 250 GLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERL 309

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  MQ + ++P  F L  V+ A A +    Q  WIH +  R+ +  D  + TAL+DMY+K
Sbjct: 310 FARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSK 369

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CGR+ +A ++F+  + + V TWNAMI G   HG    A+ELF +M+     P+  TF  V
Sbjct: 370 CGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSV 429

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L+AC+HAG++D G +    M++ YG++P +EHYG +VDLLGRAG L EA   I +MP+EP
Sbjct: 430 LAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEP 489

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRK 509
             +V+ A+LGAC+ H  VE  E   +I+ E+ P+                   DVA++R 
Sbjct: 490 GISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRT 549

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
            M+++G++  PG S+I +   +H F +G  +H   K+IY  L K+IE++K  GY P++  
Sbjct: 550 AMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDS 609

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           +  D++++ K      HSEKLAIA+G I T PG TI++ KNLRVC DCH+ATKLIS +  
Sbjct: 610 I-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTG 668

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+II+RD  R+HHF++GKCSC D+W
Sbjct: 669 REIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 177/411 (43%), Gaps = 55/411 (13%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK--AR 188
           P   T+  + K C+       G  VHA +   GL  +    ++   MY  F C     AR
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMY--FKCRRPADAR 71

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKE---------------------------- 220
           ++ D     D + WNA++ GY + G    A E                            
Sbjct: 72  RVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD 131

Query: 221 -------------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                          ++  D+      A++  + + G  E AR +F+ M  ++ ++W+A+
Sbjct: 132 ARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAM 191

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           IDGY  +G   EA+ +F  M ++ +      +   L AC  LG LD+   +H+ + R  +
Sbjct: 192 IDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGL 251

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMHGRADDAIELFF 386
             +  +  AL+  YAKC R D+A +VF ++  K+   +WNAMI G   +   +DA  LF 
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQA--LTYMQQMYGIDPEVEHYGCIVDLLG 444
           +MQ E +RPD  T   V+ A A    I   LQA  +      + +D +V     ++D+  
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVAD---ISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYS 368

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           + G ++ A  +  S   + +   W A++     HG   FG+   ++  EM+
Sbjct: 369 KCGRVSIARRLFDS-ARDRHVITWNAMIHGYGSHG---FGQAAVELFEEMK 415



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 173/389 (44%), Gaps = 49/389 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA  L++G   D  V+ +     A  +    E A  VF+ +   N   WN+++    
Sbjct: 139 REVHAFALRAG--LDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      ++L+  MV         +     +AC       E  +VH  +V+ GL  +V 
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVS 256

Query: 170 VKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-- 226
           V ++ I  YA     + A Q+ ++ G+K   I WNA+I G+ +    E A+ LF   +  
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLE 316

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                D++     A+I  +++ GR   A
Sbjct: 317 NVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIA 376

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF+   D+  ITW+A+I GY   G+ + A+E+F EM+     P +     VLAAC+  
Sbjct: 377 RRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHA 436

Query: 310 GALDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWN 366
           G +D+G      +K++      +   GT +VD+  + G+LD AW   ++M ++  +  + 
Sbjct: 437 GLVDEGQKYFASMKKDYGLEPGMEHYGT-MVDLLGRAGKLDEAWSFIKNMPIEPGISVYG 495

Query: 367 AMIGGLAMHGR---ADDAIELFFKMQREK 392
           AM+G   +H     A+++ ++ F++  E+
Sbjct: 496 AMLGACKLHKNVELAEESAQIIFELGPEE 524



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 6/271 (2%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-- 291
            A+ + + +  R  +AR++F+ M  +D + W+A++ GY ++G    A+E    MQ ++  
Sbjct: 55  TALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGG 114

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            +P    L  VL ACA   AL     +H    R  +     + TA++D Y KCG ++ A 
Sbjct: 115 ERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAAR 174

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VF+ M ++   +WNAMI G A +G A +A+ LF++M +E +     +    L AC   G
Sbjct: 175 AVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELG 234

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            +D  ++ +  +    G+   V     ++    +      A +V + +  +     W A+
Sbjct: 235 YLDE-VRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAM 293

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
           +    ++   E  ERL      M+ +N R D
Sbjct: 294 ILGFTQNECPEDAERL---FARMQLENVRPD 321


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 348/655 (53%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA +LKS ++ + +V+  L+  +A  RF     A  +F ++   +   WNS+L   +++ 
Sbjct: 305 HATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 362

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                +  Y EM     KP+     ++  A + +     G+Q+HA+ +KNGL  D+ V +
Sbjct: 363 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGN 422

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------ 226
           S + MYA F  +     I D     DV+ W  +I G+ + G    A ELF+  +      
Sbjct: 423 SLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 482

Query: 227 --------------------DKNTGSY------------NAMISGFARFGRFEEARKLFN 254
                                K   SY            N ++  +   G  + A ++F 
Sbjct: 483 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFE 542

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            +  KD ++W+++I  Y  +G   EALE+F+ M+   ++P    L  +L+A ASL AL +
Sbjct: 543 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 602

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  + R    ++  L + LVDMYA+CG L+ +  VF  ++ K++  W +MI    M
Sbjct: 603 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 662

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG    AI+LF +M+ E + PD I F  VL AC+H+G+++ G + L  M+  Y ++P  E
Sbjct: 663 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 722

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLLGRA +L EA + +  M +EP A VW ALLGAC+ H   E GE   + LLEM
Sbjct: 723 HYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 782

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +P+N              RR  DV  +R  MK  G+K NPG S I+V   +H F   D S
Sbjct: 783 DPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 842

Query: 541 HPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           HPQ  EIY  L +I EKL  E GY   +  VL +  EEEK      HSE+LAIA+G + T
Sbjct: 843 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 902

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             GA++R+ KNLRVC DCH+  KLISK F+R++++RD  R+HHF+ G CSC D W
Sbjct: 903 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 231/494 (46%), Gaps = 54/494 (10%)

Query: 6   TTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH 65
           + TDL  +  P + S     +S      +L++  +K   S      AH +I  +  F   
Sbjct: 62  SLTDLFANQSPSQFSLDEAYSS------VLELCGSKKALSEGQQVHAH-MITSNALFNSV 114

Query: 66  YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV 125
           ++S  LV  +   +      A K+F+ +    +F WN+++ A + + EP   + LY EM 
Sbjct: 115 FLSTRLVFMYG--KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
                 +  T+P + KAC + +  + G +VH   +K G    V V +S + MY     +N
Sbjct: 173 VSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 232

Query: 186 KARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSY------- 233
            ARQ+ D    K DV+ WN++I  Y   G    A  LF    K++   NT ++       
Sbjct: 233 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 234 ----------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
                                       NA+I+ +ARFG+  EA  +F  M+D D I+W+
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 352

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           +++ G+ ++G Y EAL+ ++EM+    KP    +  ++AA A  G    G+ IH +  +N
Sbjct: 353 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN 412

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  D  +G +LVDMYAK   +     +F+ M  K+V +W  +I G A +G    A+ELF
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            ++Q E +  D +  + +L AC+   +I    +  +Y+ +  G+   V   G IVD+ G 
Sbjct: 473 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGE 530

Query: 446 AG---YLAEAEEVI 456
            G   Y A   E+I
Sbjct: 531 CGNVDYAARMFELI 544



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 230/469 (49%), Gaps = 45/469 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-HKPNVFVWNSVLRACL 109
           + H + +K G+    +V+ ++V  +  ++ ++   A ++F+ +  K +V  WNS++ A  
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMY--TKCNDLNGARQLFDRMPEKEDVVSWNSMISAYS 258

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +    + L+ EM      PN +T+    +AC  +   K+G+ +HA V+K+    +V 
Sbjct: 259 SNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVF 318

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ I MYA FG + +A  I  +    D I WN+++ G+++ G    A + +       
Sbjct: 319 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 378

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+  D +    N+++  +A+F   +   
Sbjct: 379 QKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 438

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F++M DKD ++W+ II G+ ++G +  ALE+F E+Q + I     ++S +L AC+ L 
Sbjct: 439 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 498

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +     IH ++ R  +  D VL   +VD+Y +CG +D A ++FE ++ K+V +W +MI 
Sbjct: 499 LISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 557

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
               +G A++A+ELF  M+   + PD I+   +LSA A    + +G +   ++ +  G  
Sbjct: 558 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFV 616

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            E      +VD+  R G L ++  V + +    +  +W +++ A   HG
Sbjct: 617 LEGSLASTLVDMYARCGTLEKSRNVFNFI-RNKDLVLWTSMINAYGMHG 664



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 187/397 (47%), Gaps = 47/397 (11%)

Query: 128 DSKPNKFT----YPTVFKACSITEADKEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFG 182
           +  P++F+    Y +V + C   +A  EG QVHAH++  N L   V + +  + MY   G
Sbjct: 69  NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 128

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----------------- 225
           C+  A ++ D      +  WNA+I  Y+  G+  G+ EL++                   
Sbjct: 129 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 188

Query: 226 -----KDKNTGS-----------------YNAMISGFARFGRFEEARKLFNEMNDK-DEI 262
                KD+  G+                  N+++  + +      AR+LF+ M +K D +
Sbjct: 189 ACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 248

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+++I  Y+ +G   EAL +F EMQ+  + P  +     L AC     + QG++IH  V
Sbjct: 249 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 308

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            ++S  ++  +  AL+ MYA+ G++  A  +F +M   +  +WN+M+ G   +G   +A+
Sbjct: 309 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEAL 368

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           + + +M+    +PD +    +++A A +G    G+Q   Y  +  G+D +++    +VD+
Sbjct: 369 QFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK-NGLDSDLQVGNSLVDM 427

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             +   +   + +   MP + +   W  ++    ++G
Sbjct: 428 YAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGHAQNG 463



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVL----SCVLAACASLGALDQGIWIHDH-VKRNSI 327
           K G   EA +   ++  ++  P +F L    S VL  C S  AL +G  +H H +  N++
Sbjct: 52  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
                L T LV MY KCG L  A K+F+ M  K +FTWNAMIG    +G    ++EL+ +
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 388 MQREKMRPDRITFACVLSACA-----------HAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           M+   +  D  TF C+L AC            H   I  G  ++ ++             
Sbjct: 171 MRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVAN----------- 219

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             IV +  +   L  A ++   MP + +   W +++ A   +G+
Sbjct: 220 -SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQ 262



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 121/267 (45%), Gaps = 15/267 (5%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H+ I++ G   D  +   +V  +      N + A ++F  +   +V  W S++   
Sbjct: 503 VKEIHSYIIRKG-LSDLVLQNGIVDVYGEC--GNVDYAARMFELIEFKDVVSWTSMISCY 559

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + +      + L+  M     +P+  +  ++  A +   A K+G ++H  +++ G   + 
Sbjct: 560 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 619

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + S+ + MYA  G + K+R + +     D++ W ++I+ Y   G    A +LF+  +D+
Sbjct: 620 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 679

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
           +      ++ A++   +  G   E R+    M  + ++      ++ ++D   +  + +E
Sbjct: 680 SIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEE 739

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           A +    M+   ++P   V   +L AC
Sbjct: 740 AYQFVKGME---VEPTAEVWCALLGAC 763


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/578 (37%), Positives = 318/578 (55%), Gaps = 54/578 (9%)

Query: 131  PNKFTYPTVFKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P+  T P   K+ S +    + G Q+HA  +K     + HV +S + +YA  G +++A++
Sbjct: 547  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 190  ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----------------------KD 227
            + D+      + W ALI  Y+  GD+  A  + ++                        D
Sbjct: 607  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666

Query: 228  KNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
              TG                    A +  + + G   +AR++F++M  KD + W A++ G
Sbjct: 667  LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGG 726

Query: 271  YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            Y  +G+ +EAL++F  MQ + +KP  + ++  L+AC  LGALD G      V  +    +
Sbjct: 727  YASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 786

Query: 331  AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             VLGTAL+DMYAKCG    AW VF+ M+ K++  WNAMI GL M G    A  L  +M++
Sbjct: 787  PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 846

Query: 391  EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
              ++ +  TF  +L +C H G+I  G +    M ++Y I P +EHYGC+VDLL RAG L 
Sbjct: 847  SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 906

Query: 451  EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
            EA +++  MPM  NA +  ALLG C+ H   E  E + K L+ +EP N            
Sbjct: 907  EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 966

Query: 500  ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
               R +D AK+R  MK +G++  P  S ++  G +HEFR GD SHP   +IY  L ++  
Sbjct: 967  NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 1026

Query: 557  KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
            ++K  GY P +  V+FD+++EEKE    +HSEKLAIAF  + T PG TIRV KNLRVC D
Sbjct: 1027 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSD 1086

Query: 617  CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            CH+A KL+S++  R+IIVRD  R+H FR+G CSCND+W
Sbjct: 1087 CHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 43/367 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA  LK     + +V  +L+  +A         A +VF+ +  P+   W +++ A +
Sbjct: 570 EQLHARSLKLPSHTNPHVLTSLLSLYAKCGL--LHRAQRVFDEMPHPSTVPWTALITAYM 627

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    + +         +P+ FT   V  AC+       G  V     + G+   V 
Sbjct: 628 DAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVF 687

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ + +Y   G + KAR++ D     D + W A++ GY   G    A +LF + + + 
Sbjct: 688 VATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG 747

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N     A+I  +A+ G   EA 
Sbjct: 748 MKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 807

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F +M  KD I W+A+I G    G+ K A  +  +M++  +K        +L +C   G
Sbjct: 808 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 867

Query: 311 ALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            +  G  + H+  K   I         +VD+ ++ G L  A ++ +DM M        A+
Sbjct: 868 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 927

Query: 369 IGGLAMH 375
           +GG  +H
Sbjct: 928 LGGCKIH 934


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 312/541 (57%), Gaps = 18/541 (3%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P+  +Y T+  +C     D  G +            +V   ++ +   +  G V +AR 
Sbjct: 79  RPDAVSYNTLL-SCHFAAGDVRGAR-DLFAAMPATARNVTSWNTMLSGLSRSGAVGEARA 136

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-NTGSYNAMISGFARFGRFEE 248
           +       + I WNA++  +   GD+  A+E F+   DK N   + AM+SG+   G  E+
Sbjct: 137 VFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEK 196

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACA 307
           A + F  M  +  ++W+A++ GY K+   ++AL VF  M RD  ++P +  LS VL  C+
Sbjct: 197 AMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCS 256

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L AL  G  +H    +  +      GT+LV MY KCG LD A K+F +M++++V  WNA
Sbjct: 257 NLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNA 316

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G A HG   +AIELF KM+ + + P+ ITF  VL+AC H GM D G+Q    MQ++Y
Sbjct: 317 MISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVY 376

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI+  V+HY C+VDLL RAG L  A  +I SMP +P+ + +  LL A R +  +EF E  
Sbjct: 377 GIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFA 436

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L+E  PQN               +  DV+++R+ MK+  +   PG S +++NGVIH 
Sbjct: 437 AGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHV 496

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           FR+ D  HPQ+  I+  L ++ E++K  GY P+    L D+DE  K      HSEKLAIA
Sbjct: 497 FRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIA 556

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG ++T PG T+R+ KNLRVC DCH+A KLISK+  R+II+RD  R+HHFR+G CSC D+
Sbjct: 557 FGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDY 616

Query: 654 W 654
           W
Sbjct: 617 W 617



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 141/318 (44%), Gaps = 45/318 (14%)

Query: 204 ALIDGYLKCGDIEGAKE----LFKSTKDKNTGSYNAMISGFARFGR--------FEEARK 251
           +L    ++ GD+ GA E       + + K T  YN +++G+AR  R          +AR 
Sbjct: 13  SLATAAIRRGDLAGAAEPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARH 72

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LF+ +   D ++++ ++  +   G  + A ++F  M         +  + +L+  +  GA
Sbjct: 73  LFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSW--NTMLSGLSRSGA 130

Query: 312 LDQGIWIHDHVK-RNSI---------------CV------------DAVLGTALVDMYAK 343
           + +   +   +  RNSI               C             +AVL TA+V  Y  
Sbjct: 131 VGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMD 190

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRITFAC 402
            G ++ A + FE M ++ + +WNA++ G   + RA+DA+ +F  M R+  +RP+  T + 
Sbjct: 191 SGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSS 250

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL  C++   +  G Q   +  ++  +   V     +V +  + G L  A ++ S M + 
Sbjct: 251 VLLGCSNLSALGFGRQVHQWCTKL-PLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIR 309

Query: 463 PNAAVWEALLGACRKHGE 480
            +   W A++     HG+
Sbjct: 310 -DVIAWNAMISGYAHHGD 326



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKA 142
           E A++ F ++   ++  WN+V+   ++++     + ++  MV   D +PN+ T  +V   
Sbjct: 195 EKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLG 254

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           CS   A   G QVH    K  L   V   +S + MY   G ++ A ++  +    DVI W
Sbjct: 255 CSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAW 314

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMND 258
           NA+I GY   GD   A ELF+  K +    N  ++ A+++     G  +   + F  M +
Sbjct: 315 NAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQE 374

Query: 259 KDEIT-----WSAIIDGYTKDGYYKEALEVFNEM 287
              I      +S ++D   + G  + A+ +   M
Sbjct: 375 VYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM 408


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/635 (35%), Positives = 341/635 (53%), Gaps = 66/635 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTL----VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           K  +  +L  G   +  V G++    +KC         ++A + F  +   +VF+WN ++
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKC------GRMDIARRFFEEIEFKDVFMWNIMV 184

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
                  E  + ++++ +MV    KPN  T  +   AC+     + G ++H + +K    
Sbjct: 185 SGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK---- 240

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                  + LD    SD++  N+L+D Y KC  +E A+  F   
Sbjct: 241 ----------------------VEELD----SDLLVGNSLVDYYAKCRSVEVARRKFGMI 274

Query: 226 KDKNTGSYNAM--ISGFARFG----------RFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           K  +  S+NAM  ++GF ++G          R   A  +F+E++ +D + W++II    +
Sbjct: 275 KQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQ 334

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G    AL++  EM    ++     +   L AC+ L AL QG  IH  + R  +     +
Sbjct: 335 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 394

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             +L+DMY +CG +  + ++F+ M  +++ +WN MI    MHG   DA+ LF + +   +
Sbjct: 395 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +P+ ITF  +LSAC+H+G+I+ G +    M+  Y +DP VE Y C+VDLL RAG   E  
Sbjct: 455 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 514

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E I  MP EPNAAVW +LLGACR H   +  E   + L E+EPQ+               
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R +D AK+R LMKERG+   PG S I+V   +H F  GD SHP +++I   ++ +   +K
Sbjct: 575 RWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIK 634

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P+++ VL D+DE+EKE +   HSEK+A+AFG I+T  G  +R+IKNLRVC DCHS
Sbjct: 635 EIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHS 694

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ATK ISKV KRDII+RD  R+HHF +G CSC D+W
Sbjct: 695 ATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 164/346 (47%), Gaps = 51/346 (14%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y ++ + C      + G QVHA +V NG+     + S  +++Y   GCV  AR++ D  S
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF----------------------KSTKDKNTGS- 232
           + +V  W A+++ Y   GD E   +LF                         K+   G  
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 233 -YNAMIS---------------GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            Y+ M+S                F + GR + AR+ F E+  KD   W+ ++ GYT  G 
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGT 335
           +K+AL VF +M  + +KP    ++  ++AC +L  L  G  IH + +K   +  D ++G 
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG--GLAMHGRADDAIELFFKMQ---- 389
           +LVD YAKC  +++A + F  +K  ++ +WNAM+   G   +G    A+E F +M     
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 390 --REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
              E    D + +  ++SACA +G   R + AL  +++M   + EV
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSG---RSVNALDLLREMNLSNVEV 355



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 138/259 (53%), Gaps = 6/259 (2%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  + + G  E+AR++F++M++++  +W+AI++ Y   G Y+E +++F  M  + ++P 
Sbjct: 51  LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 110

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            FV   V  AC+ L     G  ++D++       ++ +  +++DM+ KCGR+D+A + FE
Sbjct: 111 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 170

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +++ K+VF WN M+ G    G    A+ +F KM  E ++P+ IT A  +SAC +  ++  
Sbjct: 171 EIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRH 230

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G +   Y  ++  +D ++     +VD   +   +  A      M  + +   W A+L   
Sbjct: 231 GREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF-GMIKQTDLVSWNAMLAV- 288

Query: 476 RKHGEVEFGERLGKILLEM 494
              G  ++G+  GK  LE 
Sbjct: 289 --TGFTQYGD--GKAALEF 303



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           + + +L  C  L  L  G  +H  +  N + V   LG+ L+++Y + G ++ A ++F+ M
Sbjct: 12  IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             + VF+W A++      G  ++ I+LF+ M  E +RPD   F  V  AC+       G 
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
               YM  + G +      G I+D+  + G +  A      +  + +  +W  ++     
Sbjct: 132 DVYDYMLSI-GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGYTS 189

Query: 478 HGE 480
            GE
Sbjct: 190 KGE 192


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 350/612 (57%), Gaps = 47/612 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF----- 140
           A KVF+ + + NV  W ++++  + + +     SL+ +M     + NK ++  +      
Sbjct: 98  ARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM----PEKNKVSWTVMLIGFLQ 153

Query: 141 -----KACSITEADKEGVQVHAHVVKNGLCGDVHVK-----------------SSGIQMY 178
                 AC + E   +   +    + +GLC +  V                  ++ +  Y
Sbjct: 154 DGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGY 213

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
                V+ AR+I D   +   + W +++ GY++ G IE A+ELF+    K   + NAMIS
Sbjct: 214 GQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMIS 273

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           G  + G   +AR++F+ M ++++ +W  +I  + ++G+  EAL++F  MQ+  ++P    
Sbjct: 274 GLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPT 333

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L  +L+ CASL +L  G  +H  + R    VD  + + L+ MY KCG L  +  +F+   
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFP 393

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGL 417
            K++  WN++I G A HG  ++A+++F +M      +P+ +TF   LSAC++AGM++ GL
Sbjct: 394 SKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGL 453

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           +    M+ ++G+ P   HY C+VD+LGRAG   EA E+I SM +EP+AAVW +LLGACR 
Sbjct: 454 KIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRT 513

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSS 523
           H +++  E   K L+E+EP+N               R  DVA++RKLMK R ++ +PG S
Sbjct: 514 HSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCS 573

Query: 524 MIDVNGVIHEF-RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
             +V   +H F R G  SHP+ + I  +L ++   L+  GY+P+ S  L D+DEEEK  +
Sbjct: 574 WTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNS 633

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
            KYHSE+LA+A+  +    G  IRV+KNLRVC DCH+A K+ISKV +R+II+RD  R+HH
Sbjct: 634 LKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHH 693

Query: 643 FRNGKCSCNDFW 654
           FRNG+CSC D+W
Sbjct: 694 FRNGECSCKDYW 705



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 148/301 (49%), Gaps = 22/301 (7%)

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G +++AR++ D      +  WN+++ GY        A++LF    D+N  S+N ++SG+
Sbjct: 30  IGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGY 89

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + G  +EARK+F+ M +++ ++W+A++ GY  +G    A  +F +M     +  K   +
Sbjct: 90  MKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP----EKNKVSWT 145

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            +L      G +D    +++ +       D +  T+++    K GR+D A ++F++M  +
Sbjct: 146 VMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSER 201

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
            V TW  M+ G   + R DDA ++F  M  +      +++  +L      G I+      
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNGRIEDA---- 253

Query: 421 TYMQQMYGIDPEVEHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
              ++++ + P      C  ++  LG+ G +A+A  V  SM  E N A W+ ++    ++
Sbjct: 254 ---EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMK-ERNDASWQTVIKIHERN 309

Query: 479 G 479
           G
Sbjct: 310 G 310



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 149/306 (48%), Gaps = 24/306 (7%)

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           AR++ D+    ++I WN L+ GY+K G+I+ A+++F    ++N  S+ A++ G+   G+ 
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           + A  LF +M +K++++W+ ++ G+ +DG   +A +++ EM  DK        + ++   
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGL 182

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G +D+   I D +   S+    +  T +V  Y +  R+D A K+F+ M  K   +W 
Sbjct: 183 CKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWT 238

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC--VLSACAHAGMIDRGLQALTYMQ 424
           +M+ G   +GR +DA ELF  M      P +   AC  ++S     G I +  +    M+
Sbjct: 239 SMLMGYVQNGRIEDAEELFEVM------PVKPVIACNAMISGLGQKGEIAKARRVFDSMK 292

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEALLGACRKHGEV 481
           +          +  ++ +  R G+  EA ++   M    + P      ++L  C     +
Sbjct: 293 ERNDAS-----WQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASL 347

Query: 482 EFGERL 487
             G+++
Sbjct: 348 HHGKQV 353



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 33  TILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T++ IL+      S  H KQ HA +++     D YV+  L+  +   +      +  +F+
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYI--KCGELVKSKLIFD 390

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACSITEADK 150
                ++ +WNS++     H      + ++ EM +   +KPN+ T+     ACS     +
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICW 202
           EG++++  +    + G   + +     YAC        G  N+A +++D  + + D   W
Sbjct: 451 EGLKIYESM--ESVFGVKPITAH----YACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVW 504

Query: 203 NALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            +L+        ++ A+   K     + +N+G+Y  + + +A  GR+ +  +L   M  +
Sbjct: 505 GSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTR 564


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 319/577 (55%), Gaps = 82/577 (14%)

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
            P+ F  N+VLR       P   ++L+   +   + P+  TYP + +AC+   A + G  
Sbjct: 87  SPDPFSLNTVLRIFASSARPRVALALHRRHL---APPDTHTYPPLLQACARLLALRYGEG 143

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +HA   K                               +G  S V   N+L+  Y  CG 
Sbjct: 144 LHAEACK-------------------------------NGLVSLVFVKNSLVHLYGACG- 171

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN--DKDEITWSAIIDGYT 272
                                          FE A ++F+E+   +++ ++W+++++G+ 
Sbjct: 172 ------------------------------LFESAHRVFDEIPPPERNLVSWNSVLNGFA 201

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
            +G   E L VF EM   +  P  F +  VL ACA +G L  G  +H  V +  +  +A 
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAH 261

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            G AL+D+YAKCG +D A K+F +M + + V +W ++I GLA++G   DA++LF  M+RE
Sbjct: 262 AGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMERE 321

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           K+ P  IT   VL AC+H G++D G +    M+  YGI P +EH GC+VDLLGRAG + E
Sbjct: 322 KLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEE 381

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   I++MP+EPNA VW  LLGAC  H ++E GE     L+E++P +             
Sbjct: 382 AHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAG 441

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R  DV  +RK M   G++ NPG S++++   ++EF  GD SHP+  +IY ML  I E+
Sbjct: 442 VGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAER 501

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           L+ +GY P++S VL DI++EEKE+A  YHSE+LAIAF  + + PG  IR++KNLRVC DC
Sbjct: 502 LRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDC 561

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H A KLISKV+ R+IIVRDR R+HHF+ G CSC D+W
Sbjct: 562 HMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWNSVLRACLE 110
           HA   K+G     +V  +LV  H       FE A +VF+ +  P  N+  WNSVL     
Sbjct: 145 HAEACKNGLVSLVFVKNSLV--HLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAA 202

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +  P  V++++ EM+ V+  P+ FT  +V  AC+       G +VH  V K GL G+ H 
Sbjct: 203 NGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHA 262

Query: 171 KSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
            ++ I +YA  G V+ AR++  + G    V+ W +LI G    G    A +LF   + + 
Sbjct: 263 GNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREK 322

Query: 230 TGSYNAMISGF----ARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
                  + G     +  G  ++  + F++M  +  IT        ++D   + G  +EA
Sbjct: 323 LMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEA 382

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
                 M    ++P   V   +L ACA    L+ G
Sbjct: 383 HNYITTM---PLEPNAVVWRTLLGACAMHKKLEIG 414


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 361/659 (54%), Gaps = 56/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  ILKSG  + + V  +LV  +  +     + A KVF+ + + +V  WNS++   +
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNH--RVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    + +S++ +M+    + +  T  +VF  C+ +     G  VH   VK     +  
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
             ++ + MY+  G ++ A+ +  + S   V+ + ++I GY + G    A +LF+  +++ 
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 230 TGS---------------------------------------YNAMISGFARFGRFEEAR 250
                                                      NA++  +A+ G   EA 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
            +F+EM  KD I+W+ +I GY+K+ Y  EAL +FN +  +K   P +  ++CVL ACASL
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            A D+G  IH ++ RN    D  +  +LVDMYAKCG L +A  +F+D+  K++ +W  MI
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMI 572

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  MHG   +AI LF +M++  + PD I+F  +L AC+H+G++D G +    M+    I
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P VEHY CIVD+L R G L++A   I +MP+ P+A +W ALL  CR H +V+  ER+ +
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAE 692

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + E+EP+N               + ++V ++RK + +RG++ NPG S I++ G ++ F 
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            GD S+P+ ++I   L+ +  ++  EGYSP +   L D +E EKE A   HSEKLA+A G
Sbjct: 753 AGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALG 812

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I++  G  IRV KNLRVC DCH   K +SK+ +R+I++RD  R+H F++G CSC  FW
Sbjct: 813 IISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 231/497 (46%), Gaps = 49/497 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+    I  +G   D  +   L   + N    + + A +VF+ V       WN ++    
Sbjct: 114 KEVDNFIRGNGFVLDSNLGSKLALMYTNC--GDLKEASRVFDQVKIEKALFWNILMNELA 171

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    I L+ +M+    + + +T+  V K+ S   +   G Q+H +++K+G      
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNS 231

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG---------------- 213
           V +S +  Y     V+ AR++ D+ ++ DVI WN++I+GY+  G                
Sbjct: 232 VGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG 291

Query: 214 ---DIEGAKELFKSTKDKNTGSY--------------------NAMISGFARFGRFEEAR 250
              D+     +F    D    S                     N ++  +++ G  + A+
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F EM+ +  ++++++I GY ++G   EA+++F EM+ + I P  + ++ VL  CA   
Sbjct: 352 VVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNR 411

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            LD+G  +H+ +K N +  D  +  AL+DMYAKCG +  A  VF +M++K++ +WN +IG
Sbjct: 412 LLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIG 471

Query: 371 GLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYG 428
           G + +  A++A+ LF  +  EK   PD  T ACVL ACA     D+G +   Y M+  Y 
Sbjct: 472 GYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
            D  V +   +VD+  + G L  A  +   +    +   W  ++     HG   FG+   
Sbjct: 532 SDRHVAN--SLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVMIAGYGMHG---FGKEAI 585

Query: 489 KILLEMEPQNRRCDDVA 505
            +  +M       D+++
Sbjct: 586 ALFNQMRQAGIEPDEIS 602



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 181/384 (47%), Gaps = 43/384 (11%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T  +V + C+ +++ K+G +V   +  NG   D ++ S    MY   G + +A ++ D  
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFK----------------------STKDKNTGS 232
                + WN L++   K GD  G+  LFK                      S +  N G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 233 Y-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                             N++++ + +  R + ARK+F+EM ++D I+W++II+GY  +G
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             ++ L VF +M    I+     +  V A CA    +  G  +H    +     +     
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCN 335

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
            L+DMY+KCG LD A  VF +M  + V ++ +MI G A  G A +A++LF +M+ E + P
Sbjct: 336 TLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D  T   VL+ CA   ++D G +   ++++   G D  V +   ++D+  + G + EAE 
Sbjct: 396 DVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAEL 453

Query: 455 VISSMPMEPNAAVWEALLGACRKH 478
           V S M ++ +   W  ++G   K+
Sbjct: 454 VFSEMRVK-DIISWNTVIGGYSKN 476



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           + + G  K A+++ +   +  I PR   L  VL  CA   +L  G  + + ++ N   +D
Sbjct: 71  FCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLD 128

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           + LG+ L  MY  CG L  A +VF+ +K+++   WN ++  LA  G    +I LF KM  
Sbjct: 129 SNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
             +  D  TF+CV  + +    ++ G Q   Y+
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYI 221


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 329/592 (55%), Gaps = 61/592 (10%)

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY---------P 137
           L +F   +  + F  N +LR  L H  P R+             P+ FT+          
Sbjct: 83  LLLFRCSNCTSAFASNHLLR-VLPHPLPLRLFPRLPR-----RNPHSFTFLLASLSNHLD 136

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T   A     +   G  VHA  VK G  GD++V+++ I  Y                   
Sbjct: 137 TEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV----------------- 179

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKD-KNTGSYNAMISGFARFGRFEEARKLFNEM 256
                         CGD+   +++F      ++  ++NA+++G+ R G    AR++F+ M
Sbjct: 180 --------------CGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +DE++WS +I GY K+G  + AL VF  M    +K  +  +   L+A A LG L+QG 
Sbjct: 226 PVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK 285

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           ++H+ VKR  + +   LG AL+DMY+KCG +  A +VF+ M  ++VF WN+MI GLA HG
Sbjct: 286 FVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHG 345

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              DA++LF K   E   P  ITF  VL+AC+  G++D G +    M + Y I+ E+EHY
Sbjct: 346 LGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHY 405

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLL RAG + EA E+I  M + P+  +W  +L AC++HG V+ G  +G  L+E++P
Sbjct: 406 GCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDP 465

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
            +              ++ D+V K+RKLM  RG   + G S+++ +G++H+F  GD +H 
Sbjct: 466 AHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHK 525

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
               IY ML  I  +L   GY P+ S VL DI +EEK  A K HSE+LAIA+GFI  + G
Sbjct: 526 DSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAG 585

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + IR++KNL VC DCH  +K+++KVF R+I+VRD  R+HH ++GKCSC+D+W
Sbjct: 586 SPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
           +A +VF+ +   +   W++V+   ++  EP   + ++  MV    K N+    T   A +
Sbjct: 217 VAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAA 276

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                ++G  VH  V + G+   V++ ++ I MY+  G V  A+++ D   + DV  WN+
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 205 LIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G    G    A +LF+    +     + ++  +++  +R G  +E R+ F  M +K 
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +I      +  ++D  ++ G  +EA+E+   M   +I P   +   +L+AC   G +D G
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGM---RIPPDPVLWGTILSACKRHGLVDLG 453

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           I + + +       D      L  +YAK  + D   KV + M
Sbjct: 454 ITVGNKLIELDPAHDGYY-VLLASIYAKAKKWDEVRKVRKLM 494



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H V+ + G      +   L+  +  S+  +   A +VF+++ + +VF WNS++    
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMY--SKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      + L+ + V     P   T+  V  ACS T    EG +         L  + +
Sbjct: 343 THGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK------LMAEKY 396

Query: 170 VKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALID-----GYLKCGDIE 216
              S ++ Y C        G V +A ++++      D + W  ++      G +  G   
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           G K +       + G Y  + S +A+  +++E RK+   M+++
Sbjct: 457 GNKLI--ELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNR 497


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/664 (33%), Positives = 365/664 (54%), Gaps = 57/664 (8%)

Query: 9    DLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVS 68
            +L H ++ E+     I   +F+  T+L +   + + +    +Q HA ++++   ++  V 
Sbjct: 464  ELYHDMQSED----GIQPDQFTFTTLLTLCANQRNDN--QGRQIHAHLIRANITKNIIVE 517

Query: 69   GTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
              LV  H  S       A ++FN + + N + WNS++    ++ E    + L+ +M    
Sbjct: 518  TELV--HMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 575

Query: 129  SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             KP+ F+  ++  +C      ++G ++H  +V+N +                        
Sbjct: 576  IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM------------------------ 611

Query: 189  QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                   + + I    L+D Y KCG ++ A +++  T  K+    N M+S F   GR  +
Sbjct: 612  -------EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAND 664

Query: 249  ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            A+ LF++M  ++   W++I+ GY   G  KE+   F EM    I+     +  ++  C+S
Sbjct: 665  AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSS 724

Query: 309  LGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            L AL+ G  +H  + K+  +    VL TALVDMY+KCG +  A  VF++M  K + +WNA
Sbjct: 725  LPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNA 784

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            MI G + HG + +A+ L+ +M ++ M P+ +TF  +LSAC+H G+++ GL+  T MQ+ Y
Sbjct: 785  MISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDY 844

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
             I+ + EHY C+VDLLGRAG L +A+E +  MP+EP  + W ALLGACR H +++ G   
Sbjct: 845  NIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLA 904

Query: 488  GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
             + L E++PQN               R  +V  +R++MK +G+K +PG S I++N  I  
Sbjct: 905  AQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQI 964

Query: 534  FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY---HSEKL 590
            F  G  +HP+ +EIY  L+ +  + K  GY P++S +L ++ + ++E   +Y   HSE+L
Sbjct: 965  FHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERL 1024

Query: 591  AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
            A++ G I+    +TIRV KNLR+C DCH+ATK ISK+  R II RD  R+HHF NGKCSC
Sbjct: 1025 ALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSC 1084

Query: 651  NDFW 654
             D+W
Sbjct: 1085 GDYW 1088



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 150/519 (28%), Positives = 257/519 (49%), Gaps = 53/519 (10%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           H KP       +P S   Q  I          S+Q  K  H  ++ +G+  D Y+   ++
Sbjct: 62  HTKPAS-DVNPLPYSSLIQDCIDS-------NSFQRGKSIHTQMISNGYNPDAYLMTKIL 113

Query: 73  KCHANSR-FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
             +A S    +   A K+F  + + N+  WN+++ A    ++   V+ LY  M G  +  
Sbjct: 114 MLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS 173

Query: 132 NKFTYPTVFKACSITEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           +KFT+P+V KAC I   D  GV Q+ + VVK GL  ++ V  + +  YA FG ++ A   
Sbjct: 174 DKFTFPSVIKAC-IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTS 232

Query: 191 LDDGSKSDVICWNALIDGYLK--------------------------------CGDI--- 215
           LD+   + V+ WNA+I GY+K                                CG +   
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSR 292

Query: 216 EGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
           +G K+    L       +T   NA+I  +A+    E   K+F+EM +++++TW++II   
Sbjct: 293 DGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 352

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G++ +AL +F  MQ    K  +F L  +L A A L  + +G  +H H+ RN +  D 
Sbjct: 353 AQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDI 412

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           +LG+ALVDMY+KCG ++ A +VF  +  +   ++NA++ G    G+A++A+EL+  MQ E
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSE 472

Query: 392 K-MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             ++PD+ TF  +L+ CA+    ++G Q   ++ +   I   +     +V +    G L 
Sbjct: 473 DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLN 531

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            A+E+ + M  E NA  W +++   +++GE +   RL K
Sbjct: 532 YAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFK 569



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 10/261 (3%)

Query: 240 FARFGRFEE---ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           +AR G  ++   ARKLF EM +++   W+ +I  Y +   Y E L ++  M+       K
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDK 175

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           F    V+ AC ++  +     +   V +  +  +  +G ALVD YA+ G +D A    ++
Sbjct: 176 FTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDE 235

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           ++   V TWNA+I G       ++A  +F +M +  + PD  TFA  L  C      D G
Sbjct: 236 IEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 295

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
            Q  + +    G   +      ++D+  +        +V   M  E N   W +++ A  
Sbjct: 296 KQVHSKLIAC-GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISA-- 351

Query: 477 KHGEVEFGERLGKILLEMEPQ 497
              E +FG     ++L +  Q
Sbjct: 352 ---EAQFGHFNDALVLFLRMQ 369


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 349/655 (53%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA +LKS ++ + +V+  L+  +A  RF     A  +F ++   +   WNS+L   +++ 
Sbjct: 341 HATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNG 398

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                +  Y EM     KP+     ++  A + +     G+Q+HA+ +KNGL  D+ V +
Sbjct: 399 LYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGN 458

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------ 226
           S + MYA F  +     I D     DV+ W  +I G+ + G    A ELF+  +      
Sbjct: 459 SLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 518

Query: 227 --------------------DKNTGSY------------NAMISGFARFGRFEEARKLFN 254
                                K   SY            N ++  +   G  + A ++F 
Sbjct: 519 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFE 578

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            +  KD ++W+++I  Y  +G   EALE+F+ M+   ++P    L  +L+A ASL AL +
Sbjct: 579 LIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKK 638

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  + R    ++  L + LVDMYA+CG L+ +  VF  ++ K++  W +MI    M
Sbjct: 639 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 698

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG    AI+LF +M+ E + PD I F  VL AC+H+G+++ G + L  M+  Y ++P  E
Sbjct: 699 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPE 758

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLLGRA +L EA + +  M +EP A VW ALLGAC+ H   E GE   + LLEM
Sbjct: 759 HYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEM 818

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +P+N              RR  DV ++R  MK  G+K NPG S I+V   +H F   D S
Sbjct: 819 DPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKS 878

Query: 541 HPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           HPQ  EIY  L +I EKL  E GY   +  VL +  EEEK      HSE+LAIA+G + T
Sbjct: 879 HPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTT 938

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             GA++R+ KNLRVC DCH+  KLISK F+R++++RD  R+HHF+ G CSC D W
Sbjct: 939 PEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 231/494 (46%), Gaps = 54/494 (10%)

Query: 6   TTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDH 65
           + TDL  +  P + S     +S      +L++  +K   S      AH +I  +  F   
Sbjct: 98  SLTDLFANQSPSQFSLDEAYSS------VLELCGSKKALSEGQQVHAH-MITSNALFNSV 150

Query: 66  YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV 125
           ++S  LV  +   +      A K+F+ +    +F WN+++ A + + EP   + LY EM 
Sbjct: 151 FLSTRLVFMYG--KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
                 +  T+P + KAC + +  + G +VH   +K G    V V +S + MY     +N
Sbjct: 209 VSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 268

Query: 186 KARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSY------- 233
            ARQ+ D    K DV+ WN++I  Y   G    A  LF    K++   NT ++       
Sbjct: 269 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 234 ----------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
                                       NA+I+ +ARFG+  EA  +F  M+D D I+W+
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 388

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           +++ G+ ++G Y EAL+ ++EM+    KP    +  ++AA A  G    G+ IH +  +N
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  D  +G +LVDMYAK   +     +F+ M  K+V +W  +I G A +G    A+ELF
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            ++Q E +  D +  + +L AC+   +I    +  +Y+ +  G+   V   G IVD+ G 
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGE 566

Query: 446 AG---YLAEAEEVI 456
            G   Y A   E+I
Sbjct: 567 CGNVDYAARMFELI 580



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 230/469 (49%), Gaps = 45/469 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-HKPNVFVWNSVLRACL 109
           + H + +K G+    +V+ ++V  +  ++ ++   A ++F+ +  K +V  WNS++ A  
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMY--TKCNDLNGARQLFDRMPEKEDVVSWNSMISAYS 294

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +    + L+ EM      PN +T+    +AC  +   K+G+ +HA V+K+    +V 
Sbjct: 295 SNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVF 354

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ I MYA FG + +A  I  +    D I WN+++ G+++ G    A + +       
Sbjct: 355 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 414

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+  D +    N+++  +A+F   +   
Sbjct: 415 QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 474

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F++M DKD ++W+ II G+ ++G +  ALE+F E+Q + I     ++S +L AC+ L 
Sbjct: 475 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 534

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +     IH ++ R  +  D VL   +VD+Y +CG +D A ++FE ++ K+V +W +MI 
Sbjct: 535 LISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 593

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
               +G A++A+ELF  M+   + PD I+   +LSA A    + +G +   ++ +  G  
Sbjct: 594 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFV 652

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            E      +VD+  R G L ++  V + +    +  +W +++ A   HG
Sbjct: 653 LEGSLASTLVDMYARCGTLEKSRNVFNFI-RNKDLVLWTSMINAYGMHG 700



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 187/397 (47%), Gaps = 47/397 (11%)

Query: 128 DSKPNKFT----YPTVFKACSITEADKEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFG 182
           +  P++F+    Y +V + C   +A  EG QVHAH++  N L   V + +  + MY   G
Sbjct: 105 NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 164

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----------------- 225
           C+  A ++ D      +  WNA+I  Y+  G+  G+ EL++                   
Sbjct: 165 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILK 224

Query: 226 -----KDKNTGS-----------------YNAMISGFARFGRFEEARKLFNEMNDK-DEI 262
                KD+  G+                  N+++  + +      AR+LF+ M +K D +
Sbjct: 225 ACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVV 284

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+++I  Y+ +G   EAL +F EMQ+  + P  +     L AC     + QG++IH  V
Sbjct: 285 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 344

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            ++S  ++  +  AL+ MYA+ G++  A  +F +M   +  +WN+M+ G   +G   +A+
Sbjct: 345 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEAL 404

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           + + +M+    +PD +    +++A A +G    G+Q   Y  +  G+D +++    +VD+
Sbjct: 405 QFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK-NGLDSDLQVGNSLVDM 463

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             +   +   + +   MP + +   W  ++    ++G
Sbjct: 464 YAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGHAQNG 499



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVL----SCVLAACASLGALDQGIWIHDH-VKRNSI 327
           K G   EA +   ++  ++  P +F L    S VL  C S  AL +G  +H H +  N++
Sbjct: 88  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
                L T LV MY KCG L  A K+F+ M  K +FTWNAMIG    +G    ++EL+ +
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 388 MQREKMRPDRITFACVLSACA-----------HAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           M+   +  D  TF C+L AC            H   I  G  ++ ++             
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVAN----------- 255

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             IV +  +   L  A ++   MP + +   W +++ A   +G+
Sbjct: 256 -SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQ 298



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 120/267 (44%), Gaps = 15/267 (5%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H+ I++ G   D  +   +V  +      N + A ++F  +   +V  W S++   
Sbjct: 539 VKEIHSYIIRKG-LSDLVLQNGIVDVYGEC--GNVDYAARMFELIEFKDVVSWTSMISCY 595

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + +      + L+  M     +P+  +  ++  A +   A K+G ++H  +++ G   + 
Sbjct: 596 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 655

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + S+ + MYA  G + K+R + +     D++ W ++I+ Y   G    A +LF+  +D+
Sbjct: 656 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 715

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
           +      ++ A++   +  G   E R+    M  + ++      +  ++D   +  + +E
Sbjct: 716 SIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEE 775

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           A +    M+   ++P   V   +L AC
Sbjct: 776 AYQFVKGME---VEPTAEVWCALLGAC 799


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/617 (35%), Positives = 332/617 (53%), Gaps = 24/617 (3%)

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
           G  +D +V+ +L+  HA  RF     A  V + +    V  W++++ A   H +      
Sbjct: 50  GVSRDAFVASSLL--HAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWG 107

Query: 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
           L   M     +PN  T+  +    + +   ++ V     +   G   D    S  +    
Sbjct: 108 LLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVG 167

Query: 180 CFGCVNKARQ----ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
             G V    Q    ++  G + D     ALID Y KCG  +    +F  +   +  S NA
Sbjct: 168 DVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNA 227

Query: 236 MISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           +++G +R  +  EA +LF E   +    + ++W++I+    ++G   EA+++F EMQ + 
Sbjct: 228 LVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEG 287

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I+P    + CVL A A++ AL  G   H    R     D  +G+ALVDMYAKCGR+  A 
Sbjct: 288 IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDAR 347

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            +FE M  + V +WNAMIGG AMHG A++A+ LF  MQ  K +PD +TF CVL AC+ AG
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
             + G      MQ  +GI P +EHY C+V LLGRAG L +A ++I+ MP EP+  +W +L
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           LG+CR HG V   E   + L ++EP+N              +  D V ++R +MK  G+K
Sbjct: 468 LGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLK 527

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
              G S I++   +H    GD SHP +  I   LK +  +++  G++P++  VL D++E+
Sbjct: 528 KEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQ 587

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           EK+     HSEKLA+A G I+T  G  ++VIKNLR+C DCH A K IS   +R+I VRD 
Sbjct: 588 EKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDT 647

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHF++GKCSC D+W
Sbjct: 648 NRFHHFKDGKCSCADYW 664



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 166/400 (41%), Gaps = 75/400 (18%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           V   P+    P+  K+CS     +    +HA     G+  D  V SS +  Y  FG    
Sbjct: 17  VSFPPDPRLLPSALKSCSALRLAR---ALHAAAAVAGVSRDAFVASSLLHAYLRFGATAD 73

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFAR 242
           AR +LD      V+ W+ALI  +   GD EGA  L +  +    + N  ++N ++SG  R
Sbjct: 74  ARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNR 133

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            GR                                ++A+     M  +   P    +SC 
Sbjct: 134 SGR-------------------------------ARDAVLALVRMHGEGFLPDATGVSCA 162

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+A   +G +  G  +H +V +    +DA + TAL+DMY KCGR D   +VF++    +V
Sbjct: 163 LSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDV 222

Query: 363 FTWNAMIGGLA-----------------------------------MHGRADDAIELFFK 387
            + NA++ GL+                                    +GR  +A++LF +
Sbjct: 223 ASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFRE 282

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           MQ E + P+ +T  CVL A A+   +  G  A  +  +  G   ++     +VD+  + G
Sbjct: 283 MQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLR-KGFHHDIYVGSALVDMYAKCG 341

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            + +A  +  +MP   N   W A++G    HGE E   RL
Sbjct: 342 RVRDARMIFEAMPYR-NVVSWNAMIGGYAMHGEAENAVRL 380



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 19/220 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H + AH   L+ G   D YV   LV  +A  +      A  +F ++   NV  WN+++  
Sbjct: 310 HGRSAHCFSLRKGFHHDIYVGSALVDMYA--KCGRVRDARMIFEAMPYRNVVSWNAMIGG 367

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              H E    + L+  M     KP+  T+  V  ACS     +EG      +        
Sbjct: 368 YAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHK----- 422

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGS--------KSDVICWNALIDGYLKCGDI---E 216
            H  S  ++ YAC   +      LDD          + D   W +L+      G++   E
Sbjct: 423 -HGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAE 481

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
            A E     + +N G+Y  + + +A    ++   +L + M
Sbjct: 482 VAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMM 521


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 335/609 (55%), Gaps = 77/609 (12%)

Query: 123 EMVGVDSKPNK--FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           E++    KP+    TY +V + C+  ++ ++G ++H+ +  N +  D  + S  + MY  
Sbjct: 89  ELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVT 148

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------------------IEGAKELF 222
            G + + R+I D  +   V  WN L++GY K G+                  +E A++LF
Sbjct: 149 CGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLF 208

Query: 223 KSTKDKNTGSYNAMISGF------------------------------------------ 240
               D++  S+N+MISG+                                          
Sbjct: 209 DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDM 268

Query: 241 -ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
            ++ G    A ++F  M ++  ++W+++I GY ++G    ++ +F+EM+++ + P    +
Sbjct: 269 YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITM 328

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           +C+L ACASL AL++G  IH H+ RN   +D  +  ALVDMY KCG L +A  +F+ +  
Sbjct: 329 ACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPE 388

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K++ +W  MI G  MHG   +AI  F +M+   + PD ++F  +L AC+H+G++D G   
Sbjct: 389 KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 448

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M+    I+P+ EHY CIVDLL RAG L++A + I  MP+EP+A +W ALL  CR + 
Sbjct: 449 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH 508

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
           +V+  E++ + + E+EP+N               + ++V K+R+ +  RG++ NPG S I
Sbjct: 509 DVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 568

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           ++ G +H F TGD SHP   +I L+LKK   ++K EG+ P     L   D+ EKE A   
Sbjct: 569 EIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCG 628

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEK+A+AFG ++  PG T+RV KNLRVC DCH   K +SK+ KRDII+RD  R+HHF++
Sbjct: 629 HSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKD 688

Query: 646 GKCSCNDFW 654
           G CSC   W
Sbjct: 689 GSCSCRGHW 697



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 165/391 (42%), Gaps = 79/391 (20%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W  L   +A   K G+F++   S +L K          E A K+F+ +   +V  WNS++
Sbjct: 170 WNLLMNGYA---KIGNFRE---SLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              + +    + + L+ +M+ +    +  T  +V                          
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV-------------------------- 257

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            ++ + +  + MY+  G +N A Q+ +   +  V+ W ++I GY + G  + +  LF   
Sbjct: 258 -ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 316

Query: 226 KD----------------------------------KNTGSY-----NAMISGFARFGRF 246
           +                                   +N  S      NA++  + + G  
Sbjct: 317 EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 376

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             AR LF+ + +KD ++W+ +I GY   GY  EA+  FNEM+   I+P +     +L AC
Sbjct: 377 GLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 436

Query: 307 ASLGALDQGIWIHDHVKRNSICVD--AVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           +  G LD+G W   ++ RN+ C++  +     +VD+ A+ G L  A+K  + M ++ +  
Sbjct: 437 SHSGLLDEG-WGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495

Query: 364 TWNAMIGGLAMH---GRADDAIELFFKMQRE 391
            W A++ G  ++     A+   E  F+++ E
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPE 526



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G  + A+E+ N+  +  ++ R +    VL  CA L ++  G  IH  ++ N + VD VLG
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLG 139

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           + LV MY  CG L    ++F+ +  ++VF WN ++ G A  G   +++ LF +M+   +R
Sbjct: 140 SKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR 199

Query: 395 --------------PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--------E 432
                          D I++  ++S     G+ ++GL     M  + GI+         E
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM-LLLGINTDLATMVSVE 258

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           +    C++D+  ++G L  A +V  +M  E +   W +++    + G  +   RL
Sbjct: 259 LTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRL 312


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/664 (35%), Positives = 363/664 (54%), Gaps = 96/664 (14%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSR-FSNFELALKVFNSVHKPNVFVWNSVL 105
           Q  +  H  ++K+G   + YV   LV  +A  R  S  E+  K   + +K N  +W +++
Sbjct: 229 QKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGL-AFNKGNHVLWTAMV 287

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               ++ +  + I  +  M     + N+FT+P++  ACS   A   G QVH  +V+NG  
Sbjct: 288 TGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFG 347

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            + +V+S+ + MYA  G +  A+++L++    DV+ WN++I G ++ G  E A  LFK  
Sbjct: 348 CNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKM 407

Query: 226 KDKN-------------------------------TG--SY----NAMISGFARFGRFEE 248
             +N                               TG  +Y    NA++  +A+      
Sbjct: 408 HARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNC 467

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F +M +KD I+W++++ GYT++G ++E+L+ F +M+   + P +F+++ +L+ACA 
Sbjct: 468 AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAE 527

Query: 309 LGALDQGIWIH-DHVK---RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           L  L+ G  +H D +K   R+S+ V+     +LV MYAKCG LD A  +F  M +++V T
Sbjct: 528 LTLLEFGKQVHSDFIKLGLRSSLSVN----NSLVTMYAKCGCLDDADAIFVSMHVRDVIT 583

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W A+I G A +G+  D+++ F +M++                                  
Sbjct: 584 WTALIVGYARNGKGRDSLKYFQQMKK---------------------------------- 609

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            +YGI+P  EHY C++DL GR G L EA+E+++ M ++P+A VW+ALL ACR HG +E G
Sbjct: 610 -IYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELG 668

Query: 485 ERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           ER    L E+EP N              R+ DD AK+R+LMK +GI   PG S I++N  
Sbjct: 669 ERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSR 728

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F + D  HP+  EIY  + +II ++K  GY P+ +  L D+D E KE    YHSEKL
Sbjct: 729 LHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKL 788

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           A+AFG + + PGA IR+ KNLRVC DCHSA K IS VF R II+RD   +HHF+ G+CSC
Sbjct: 789 AVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSC 848

Query: 651 NDFW 654
            D+W
Sbjct: 849 EDYW 852



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 21/309 (6%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N L++G  K G I+ A+ELF     ++  ++N M+SG+A  GR  EAR+LFN  + +  I
Sbjct: 119 NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSI 178

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           TWS++I GY + G   EA ++F  M+ +  KP ++ L  +L  C++LG + +G  IH +V
Sbjct: 179 TWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYV 238

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV--FTWNAMIGGLAMHGRADD 380
            +N    +  +   LVDMYAKC  +  A  +F+ +   +     W AM+ G A +G    
Sbjct: 239 VKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHK 298

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-- 438
           AIE F  M  E +  ++ TF  +L+AC+        + A  + +Q++G       +GC  
Sbjct: 299 AIEFFRYMHTEGVESNQFTFPSILTACS-------SVSAHCFGEQVHGCIVR-NGFGCNA 350

Query: 439 -----IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
                +VD+  + G L  A+ V+ +M  + +   W +++  C +HG   F E    +  +
Sbjct: 351 YVQSALVDMYAKCGDLGSAKRVLENME-DDDVVSWNSMIVGCVRHG---FEEEAILLFKK 406

Query: 494 MEPQNRRCD 502
           M  +N + D
Sbjct: 407 MHARNMKID 415



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 179/424 (42%), Gaps = 74/424 (17%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           +D Y   T+V  +AN        A ++FN     +   W+S++              L+ 
Sbjct: 144 RDEYTWNTMVSGYAN--VGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFK 201

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
            M     KP+++T  ++ + CS     ++G  +H +VVKNG   +V+V +          
Sbjct: 202 RMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVA---------- 251

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
                                 L+D Y KC  I  A+ LFK               G A 
Sbjct: 252 ---------------------GLVDMYAKCRHISEAEILFK---------------GLA- 274

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
                         N  + + W+A++ GY ++G   +A+E F  M  + ++  +F    +
Sbjct: 275 -------------FNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSI 321

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L AC+S+ A   G  +H  + RN    +A + +ALVDMYAKCG L  A +V E+M+  +V
Sbjct: 322 LTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDV 381

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +WN+MI G   HG  ++AI LF KM    M+ D  TF  VL+ C    +  + +  L  
Sbjct: 382 VSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLV- 440

Query: 423 MQQMYGIDPEVEHY----GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
                 I    E+Y      +VD+  +   L  A  V   M  E +   W +L+    ++
Sbjct: 441 ------IKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKM-FEKDVISWTSLVTGYTQN 493

Query: 479 GEVE 482
           G  E
Sbjct: 494 GSHE 497



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 168/396 (42%), Gaps = 86/396 (21%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHL--KQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           + +++F+  +IL    T C +   H   +Q H  I+++G   + YV   LV  +A  +  
Sbjct: 311 VESNQFTFPSIL----TACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYA--KCG 364

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           +   A +V  ++   +V  WNS++  C+ H      I L+ +M   + K + +T+P+V  
Sbjct: 365 DLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLN 424

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
            C +   D  G  VH  V+K G      V ++ + MYA    +N A  + +   + DVI 
Sbjct: 425 CCIVGRID--GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVIS 482

Query: 202 WNALIDGYLKCGDIEGAKELF--------------------------------------- 222
           W +L+ GY + G  E + + F                                       
Sbjct: 483 WTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFI 542

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           K     +    N++++ +A+ G  ++A  +F  M+ +D ITW+A+I GY ++G  +++L+
Sbjct: 543 KLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLK 602

Query: 283 VFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            F +M++   I+P     +C                                   ++D++
Sbjct: 603 YFQQMKKIYGIEPGPEHYAC-----------------------------------MIDLF 627

Query: 342 AKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHG 376
            + G+LD A ++   M +K +   W A++    +HG
Sbjct: 628 GRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHG 663


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/483 (42%), Positives = 300/483 (62%), Gaps = 22/483 (4%)

Query: 189 QILDDGSKSDVICWNALIDGYLKC--GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           Q +  G  S     N ++  Y KC  GD+  A +LF     K+T + + MI+ +     F
Sbjct: 3   QAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY-----F 57

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A K+F  M +KD + W+++I+G+  +G   EAL ++  M  + ++P  F +  +L+AC
Sbjct: 58  ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSAC 117

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTW 365
           A L  L  G   H ++ +  +  +     AL+D+YAKCG +  A K+F++M + + V +W
Sbjct: 118 AELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            ++I GLA++G   +A+E F  M+RE + P  ITF  VL AC+H G+++ G +    M++
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKE 237

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            Y I P +EHYGC+VDLLGRAG L EA + I  MP++PNA +W  LLGAC  HG +  G 
Sbjct: 238 QYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGA 297

Query: 486 RLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
                LL++EP++              +R  DV ++R+ M   G++  PG S++++   +
Sbjct: 298 FARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHV 357

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           HEF  GD +HPQ + IY ML ++  KLK+ GY P+++ VL DI+EEEKE+A  YHSEK+A
Sbjct: 358 HEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIA 417

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAF  INT PG  IR+IKNLRVC DCH A KLISKVF+RDI+VRD  R+HHFR+G CSC 
Sbjct: 418 IAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCR 477

Query: 652 DFW 654
           D+W
Sbjct: 478 DYW 480



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           FE A KVF  + + ++  WNSV+     + +P   ++LY  M     +P+ FT  ++  A
Sbjct: 57  FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSA 116

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVIC 201
           C+       G + H ++VK GL  ++H  ++ + +YA  G +++AR+I D+ G + +V+ 
Sbjct: 117 CAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVS 176

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMN 257
           W +LI G    G  + A E FK  + +    +  ++  ++   +  G   E  + F  M 
Sbjct: 177 WTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMK 236

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           ++ +I      +  ++D   + G  KEA +   +M    ++P   +   +L AC   G L
Sbjct: 237 EQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDM---PLQPNAVIWRTLLGACTIHGHL 293

Query: 313 DQGIW 317
             G +
Sbjct: 294 GLGAF 298


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/443 (43%), Positives = 278/443 (62%), Gaps = 23/443 (5%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK---------DGYYKEALEVFN 285
           A++  FAR GR    RK+F+ + + D   W+A++  Y +                LE+F 
Sbjct: 182 ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFV 241

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M    IKP +  L  V+ AC  LGA+  G+W H +  +  + V+ ++ TALV+MYA CG
Sbjct: 242 RMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 301

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RLD+A +VF     ++   +NAM+ GLA+HG    A+ LF +M  E +  D +T   V+ 
Sbjct: 302 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMC 361

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG++D GL     M+  +GI+P +EHYGC+VD+L RAG L +AE++I  MP+ PNA
Sbjct: 362 ACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNA 421

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
           A++ +L+ AC  HG++E G+++   L+ +EP +               R DD  K RK M
Sbjct: 422 AIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEM 481

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K  GI  +PGSS +D+NGV+HEF  GD +HP  KEIY M++ I  +L   G+  ++S  L
Sbjct: 482 KSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSAL 541

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD++EE+K  A  YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH + KL+S+V+ R+
Sbjct: 542 FDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 601

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I++RDR R+HHFR+G CSC DFW
Sbjct: 602 IVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 127/322 (39%), Gaps = 79/322 (24%)

Query: 88  KVFNSVHKPNVFVWNSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           KVF+ +  P++  WN++L A             +    ++ ++  M+ +  KPN+ T   
Sbjct: 198 KVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVA 257

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV  H + VK  L  +  V ++ ++MYA  G ++ A Q+    S  D
Sbjct: 258 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRD 317

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
             C+N                               AM+ G A  G    A  LF+ M+ 
Sbjct: 318 TRCYN-------------------------------AMLHGLAVHGHGRAALSLFDRMHG 346

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +        +DG T                         VLS V+ ACA  G +D+G+  
Sbjct: 347 E-----GVPVDGVT-------------------------VLS-VMCACAHAGLVDEGLDY 375

Query: 319 HDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHG 376
            D ++       ++     +VDM ++ GRL+ A K+   M +      + ++I    +HG
Sbjct: 376 FDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHG 435

Query: 377 RADDAIELFFKMQREKMR--PD 396
           +    +EL  KM  E MR  PD
Sbjct: 436 K----LELGKKMIAELMRLEPD 453



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 13/160 (8%)

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA-MHGR--------ADD 380
           D VLG AL+D++A+CGR+    KVF+ +   ++  WNA++   A +  R        AD 
Sbjct: 176 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 235

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCI 439
            +E+F +M    ++P+ IT   V+ AC   G +  G+ A TY +++   ++  V     +
Sbjct: 236 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA--TAL 293

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           V++    G L  AE+V ++   + +   + A+L     HG
Sbjct: 294 VEMYAGCGRLDLAEQVFAAAS-DRDTRCYNAMLHGLAVHG 332


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/690 (31%), Positives = 359/690 (52%), Gaps = 95/690 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA +LK   FQ   +    +     S  +    +L++FN++H P    W SV+R   
Sbjct: 26  QQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYT 82

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H  P + +  +  M+     P+   +P+V K+C++      G  +H ++++ GL  D++
Sbjct: 83  SHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLY 142

Query: 170 VKSSGIQMYACFGCVNKA--------------------------------RQILDDGSKS 197
             ++ + MY+    + ++                                R+I +   + 
Sbjct: 143 TGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEK 202

Query: 198 DVICWNALIDGYLKCG-----------------------------------DIEGAKEL- 221
           D++ WN +I G  + G                                   DI   KE+ 
Sbjct: 203 DLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIH 262

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               +   D +    +++I  +A+  R  ++ ++F  + ++D I+W++II G  ++G + 
Sbjct: 263 GCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD 322

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           E L  F +M   KIKP+ +  S ++ ACA L  L  G  +H ++ RN    +  + ++LV
Sbjct: 323 EGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 382

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKCG +  A ++F+ M+++++ +W AMI G A+HG+A DAIELF +M+ E ++    
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK---- 438

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
               VL+AC+H G++D   +    M + +GI P VEHY  + DLLGRAG L EA + I  
Sbjct: 439 ---AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICG 495

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDV 504
           M + P  ++W  LL ACR H  ++  E++   +LE++P N              RR  + 
Sbjct: 496 MHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEA 555

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           AK R  M+  GI+  P  S I+V   ++ F  GD SHP  ++I   ++ ++E ++ EGY 
Sbjct: 556 AKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYV 615

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P++S+V  D++EE+K+     HSE+LAI FG INT  G TIRV KNLRVC DCH+ATK I
Sbjct: 616 PDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFI 675

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SK+  R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 676 SKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 138/295 (46%), Gaps = 17/295 (5%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+   N+    F+  ++L ++      S    K+ H   ++ G   D YV+ +L+  +A 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDIS--RGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 78  -SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            +R ++   + +VF  + + +   WNS++  C+++      +  + +M+    KP  +++
Sbjct: 287 CTRVAD---SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSF 343

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++  AC+       G Q+H ++ +NG   ++ + SS + MYA  G +  A+QI D    
Sbjct: 344 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
            D++ W A+I G    G    A ELF+  +   T    A+++  +  G  +EA K FN M
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQME---TEGIKAVLTACSHGGLVDEAWKYFNSM 460

Query: 257 NDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
                I      ++A+ D   + G  +EA +    M    I P   + + +L+AC
Sbjct: 461 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH---IGPTGSIWATLLSAC 512


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/695 (31%), Positives = 362/695 (52%), Gaps = 94/695 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  +++     H  +  ++  + N        AL +F ++  P V  W SV+R   
Sbjct: 25  KQLHAQFIRTQSLS-HTSASIVISIYTNL--KLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + +   + ++ + EM      P+   +P+V K+C++    + G  VH  +V+ G+  D++
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 170 VKSSGIQMYA----------------------------------C---FGCVNKARQILD 192
             ++ + MYA                                  C   FG ++  R++ +
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG-IDSVRRVFE 200

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFK--STKDKNTGSY----------------- 233
              + DV+ +N +I GY + G  E A  + +   T D    S+                 
Sbjct: 201 VMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIK 260

Query: 234 --------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                               ++++  +A+  R E++ ++F+ +  +D I+W++++ GY +
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G Y EAL +F +M   K+KP     S V+ ACA L  L  G  +H +V R     +  +
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            +ALVDMY+KCG +  A K+F+ M + +  +W A+I G A+HG   +A+ LF +M+R+ +
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +P+++ F  VL+AC+H G++D        M ++YG++ E+EHY  + DLLGRAG L EA 
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 500

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNR 499
             IS M +EP  +VW  LL +C  H  +E  E++ +              ++  M   N 
Sbjct: 501 NFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNG 560

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R  ++AK+R  M+++G++  P  S I++    H F +GD SHP + +I   LK ++E+++
Sbjct: 561 RWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQME 620

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
            EGY  ++S VL D+DEE K      HSE+LA+AFG INT+PG TIRV KN+R+C DCH 
Sbjct: 621 KEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHV 680

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A K ISK+ +R+IIVRD  R+HHF  G CSC D+W
Sbjct: 681 AIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 168/355 (47%), Gaps = 27/355 (7%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+  T++    F+  ++L I +   +      K+ H  +++ G   D Y+  +LV  +A 
Sbjct: 232 EMGTTDLKPDSFTLSSVLPIFSE--YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK 289

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S  +  E + +VF+ ++  +   WNS++   +++      + L+ +MV    KP    + 
Sbjct: 290 S--ARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFS 347

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +V  AC+       G Q+H +V++ G   ++ + S+ + MY+  G +  AR+I D  +  
Sbjct: 348 SVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLF 253
           D + W A+I G+   G    A  LF+  K +    N  ++ A+++  +  G  +EA   F
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 467

Query: 254 NEMN-----DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           N M      +++   ++A+ D   + G  +EA   +N + +  ++P   V S +L++C  
Sbjct: 468 NSMTKVYGLNQELEHYAAVADLLGRAGKLEEA---YNFISKMCVEPTGSVWSTLLSSC-- 522

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALV---DMYAKCGRLDMAWKVFEDMKMK 360
             ++ + + + + V      VD+    A V   +MYA  GR    WK    ++++
Sbjct: 523 --SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGR----WKEMAKLRLR 571



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 41/309 (13%)

Query: 218 AKEL---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           AK+L   F  T+  +  S + +IS +       EA  LF  +     + W ++I  +T  
Sbjct: 24  AKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQ 83

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
             + +AL  F EM+     P   V   VL +C  +  L  G  +H  + R  +  D   G
Sbjct: 84  SLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTG 143

Query: 335 TALVDMYAK---------CGR---------------------------LDMAWKVFEDMK 358
            AL++MYAK          G                            +D   +VFE M 
Sbjct: 144 NALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMP 203

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            K+V ++N +I G A  G  +DA+ +  +M    ++PD  T + VL   +    + +G +
Sbjct: 204 RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
              Y+ +  GID +V     +VD+  ++  + ++E V S +      + W +L+    ++
Sbjct: 264 IHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS-WNSLVAGYVQN 321

Query: 479 GEVEFGERL 487
           G      RL
Sbjct: 322 GRYNEALRL 330



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 43  HTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVW 101
           H +  HL KQ H  +L+ G   + +++  LV  +  S+  N + A K+F+ ++  +   W
Sbjct: 355 HLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY--SKCGNIKAARKIFDRMNVLDEVSW 412

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADKEGVQVHAHVV 160
            +++     H      +SL+ EM     KPN+  +  V  ACS +   D+     ++   
Sbjct: 413 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 472

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILD------DGSKSDVICWNALIDGYLKCGD 214
             GL  ++   ++   +    G + +A   +        GS      W+ L+       +
Sbjct: 473 VYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS-----VWSTLLSSCSVHKN 527

Query: 215 IEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           +E A+++ +   +   +N G+Y  M + +A  GR++E  KL   M  K
Sbjct: 528 LELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKK 575


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 354/666 (53%), Gaps = 35/666 (5%)

Query: 20  SATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHA---VILKSGHFQDHYVSGTLVKCHA 76
           S +++PTS  S   +L       H     L+ AHA   V+L   H    + +  L++ +A
Sbjct: 4   SRSHLPTSGESLLRLLAACRAPAH--LPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYA 61

Query: 77  NSRFSNFELALKVFNSVH-----KPNVFVWNSVLRACLEHNEPWRVISLYSEMV--GVDS 129
               S   LA  V  S       +     +N ++RA    +     + L++ M   G   
Sbjct: 62  AC--SALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPAC 119

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P+ +TYP   K+CS ++    G+Q+H+ V K  L  +V+V  S I MY+  G    A +
Sbjct: 120 FPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYR 179

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-------STKDKNTGSYNAMISGFAR 242
           + D     DV+ WNA+I G+ + G  + A E+FK       S  D  T +      G A+
Sbjct: 180 VFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAK 239

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
                  R++F+ M  K+ I+W+A++  Y  + ++ +A+E+F  M++D+++P    L+ V
Sbjct: 240 PDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATV 299

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  C  L A   G  IH+ +KR ++C + +L  AL+DMYA CG L  A ++F+ M  ++V
Sbjct: 300 LPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDV 359

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +W ++I     HG   +A++LF KM  + + PD I F  VL+AC+HAG++  G      
Sbjct: 360 ISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDS 419

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M   Y I P+ EHY C+VDLLGRAG + EA + I++M +EPN  VW ALL ACR H  ++
Sbjct: 420 MTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMD 479

Query: 483 FGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
            G      L  + P+                R  DV  +R +M  +GIK  PG+S++++ 
Sbjct: 480 IGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELG 539

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
             +H F  GD  HPQ + IY  L +++ K++  GY+P     L D++EE+KE     HSE
Sbjct: 540 DQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSE 599

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           KLAIAF  +NT PG  IRV  NLR C DCH A KLIS +  R+I+++D  R HH   G C
Sbjct: 600 KLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVC 659

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 660 SCGDYW 665


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 343/636 (53%), Gaps = 88/636 (13%)

Query: 44  TSWQHLKQAHAVILKSGH-FQDH--YVSGTLVKCHANSRFSNFELAL--KVFNSVHKPNV 98
           TS + L Q HAV +K+G   Q H  +V+  L  C      +   LA   +VF+ +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 99  FVWNSVL-----RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
            VW + L     R             ++  M+     P+ +T+ ++ KAC+   A +EG 
Sbjct: 99  VVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGR 158

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q H   VK G     +V  +                               LI+ Y +CG
Sbjct: 159 QAHGVAVKAGAAEHEYVAPT-------------------------------LINMYAECG 187

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D+  A                               R +F+ M+ +  ++++A+I    +
Sbjct: 188 DVRAA-------------------------------RVMFDRMDGECVVSYNAMITASVR 216

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
                EAL +F EMQ   +KP    L  VL+ACA LGAL+ G WIHD++++  +     +
Sbjct: 217 SSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKV 276

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            TAL+DMYAKCG L+ A  VF+DM+ ++   W+ M+   A HG   +AI +F +M+++ M
Sbjct: 277 NTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGM 336

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +PD +TF  VL AC+H+GM+  GLQ    M++ YGI   ++HYGC+ DLL R+G L  A 
Sbjct: 337 KPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAY 395

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME--------------PQNR 499
           + I  +P++P A +W  LL AC  HG+V+ G+R+ + +LE++                  
Sbjct: 396 KFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTG 455

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R +++  +RKLM E+G+   PG S I+++ ++HEF  GDGSHP  +E   M+ ++IE+LK
Sbjct: 456 RWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLK 515

Query: 560 MEGYSPNSSQVL-FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           + GY PN+S V   ++ EEEK T+ +YHSEKLAI+FG +NT PG T+R++KNLRVC DCH
Sbjct: 516 LVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCH 575

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           S  KL+S VF R II+RD  R+HHF +G CSC D+W
Sbjct: 576 SMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 327/591 (55%), Gaps = 54/591 (9%)

Query: 118 ISLYSEMV-GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
           I ++ +MV G   + +  T   V  A +  +  K G+Q+    +K G    V + +  I 
Sbjct: 15  IRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLIS 74

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDKNTGS 232
           +++  G V  AR +  +  K D+I  NA+I G+   G+ E +    KEL  S +  ++ +
Sbjct: 75  LFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSST 134

Query: 233 YNAMISGFARFG--------------------------------RFEE---ARKLFNEMN 257
              +I  ++ FG                                R  E   AR+LF+E  
Sbjct: 135 IVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESA 194

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           +K   +W+A+I G T++G    A+ +F  MQ++ + P    ++ +L+ACA +GAL  G W
Sbjct: 195 EKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEW 254

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  +K N    +  + TAL+DMYAKCG + +A ++F+ M  K   TWNAMI G  +HG 
Sbjct: 255 VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGH 314

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
             +A++LF+ M    ++P  +TF  VL AC+HAG++  G      M   +G +P  EHY 
Sbjct: 315 GQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYA 374

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           C+VD+LGRAG L +A E I +MP+EP   VW ALLGAC  H +        + L E++P+
Sbjct: 375 CMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPE 434

Query: 498 N--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ 543
           N              R+    A +R++ K++ +   PG ++I++  V H F +GD SHPQ
Sbjct: 435 NIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQ 494

Query: 544 VKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGA 603
            K IY  L K+  K+   G+   ++ VL D++EEEKE   K HSEKLAIAFG I+T+PGA
Sbjct: 495 SKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGA 554

Query: 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IR+IKNLRVC DCH+ TK +SK+ KR I+VRD  R+HHF++G CSC D+W
Sbjct: 555 EIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 14/263 (5%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   +K G      VS  L   +   R +    A ++F+   +  +  WN+++  C ++ 
Sbjct: 155 HGFCVKLGIVSHSSVSTALTTVYC--RLNEMIFARQLFDESAEKTLASWNAMISGCTQNG 212

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ISL+  M   +  PN  T  ++  AC+   A   G  VH+ +  N    +V+V +
Sbjct: 213 LTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVST 272

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK---STKDKN 229
           + I MYA  G +  AR++ D   + + + WNA+I GY   G  + A +LF    S+  K 
Sbjct: 273 ALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKP 332

Query: 230 TG-SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
           TG ++ +++   +  G  +E   +F+ M            ++ ++D   + G  K+ALE 
Sbjct: 333 TGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEF 392

Query: 284 FNEMQRDKIKPRKFVLSCVLAAC 306
              M    ++P   V   +L AC
Sbjct: 393 IKAM---PVEPGPPVWGALLGAC 412


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 325/561 (57%), Gaps = 61/561 (10%)

Query: 154 QVHAHVVKNGL-CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           Q+H   +++GL   D +  S+ + MY        AR+  D+    + +   A+  GY++ 
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 213 GDIEGAKELFKSTK-----------------------------------------DKNTG 231
             +  + ELF++                                           ++N G
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 232 SYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             N M+  +A+ G    E ARK+F+ M ++D ++W+++I  Y ++G   EA+ ++++M  
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 292

Query: 290 --DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
               IK     LS VL ACA  GA+  G  IH+ V R  +  +  +GT++VDMY+KCGR+
Sbjct: 293 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRV 352

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           +MA + F  +K K + +W+AMI G  MHGR  +A+E+F +M+R  +RP+ ITF  VL+AC
Sbjct: 353 EMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAAC 412

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +HAG++D G      M+Q +GI+  VEHYGC+VDLLGRAG L EA  +I  M ++P+AA+
Sbjct: 413 SHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAI 472

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKE 513
           W ALL ACR H  VE  E   K L E++  N              R   DV ++R L+K 
Sbjct: 473 WGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKT 532

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           R I+  PG S  ++ G I+ F  GD SHPQ  EIY  L+K++E+++  GY PN+  VL D
Sbjct: 533 RRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHD 592

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           +DEEEKE+A + HSEKLA+AF  +N+ P + I +IKNLRVC DCH+A K I+K+ +R+II
Sbjct: 593 LDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREII 652

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           +RD  R+HHF++G CSC D+W
Sbjct: 653 IRDLQRFHHFKDGLCSCRDYW 673



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 67/327 (20%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA+I K G  ++  V  T++  +A     + E+A KVF+++ + +V  WNS++    ++ 
Sbjct: 220 HALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNG 278

Query: 113 EPWRVISLYSEM--VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                I LYS+M  VG   K N      V  AC+   A + G ++H  VV+ GL  +V+V
Sbjct: 279 MSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYV 338

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S                               ++D Y KCG +E A   F+  K+KN 
Sbjct: 339 GTS-------------------------------IVDMYSKCGRVEMASRAFRKIKEKNI 367

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S++AMI+G+   GR +E                               ALE+F EM+R 
Sbjct: 368 LSWSAMITGYGMHGRGQE-------------------------------ALEIFTEMKRS 396

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDM 349
            ++P       VLAAC+  G LD+G + ++ +K+   I         +VD+  + G LD 
Sbjct: 397 GLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDE 456

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           A+ + ++MK+K +   W A++    +H
Sbjct: 457 AYSLIKEMKVKPDAAIWGALLSACRIH 483


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/485 (42%), Positives = 298/485 (61%), Gaps = 19/485 (3%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFG 244
           QIL  G   D   + +L+     C  +E  ++L     K    +N      +I+ +    
Sbjct: 111 QILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACN 170

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
             + AR++F+++ +   +T++A+I GY +     EAL +F E+Q   +KP    +  VL+
Sbjct: 171 EMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLS 230

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           +CA LGALD G W+H++VK+N       + TAL+DMYAKCG LD A  VFE+M +++   
Sbjct: 231 SCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQA 290

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W+AMI   A+HG    A+ LF +M++    PD ITF  +L AC+H G+++ G +    M+
Sbjct: 291 WSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMR 350

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
             YG+ P ++HYGC+VDLLGRAG L EA E I  +P+ P   +W  LL AC  HG VE G
Sbjct: 351 DKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELG 410

Query: 485 ERLGKILLEME--------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           +R+ + + E++               +  R +DV  +RKLM ERG+   PG S ++VN V
Sbjct: 411 KRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNV 470

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEK 589
           +HEF +GDG H    +++  L +++++LK+ GY PN+S V   D+++EEKE   +YHSEK
Sbjct: 471 VHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEK 530

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAI FG +NT PG TIRV+KNLRVC DCHSA KLIS +F R II+RD  R+HHF++GKCS
Sbjct: 531 LAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCS 590

Query: 650 CNDFW 654
           C D+W
Sbjct: 591 CEDYW 595



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 195/442 (44%), Gaps = 50/442 (11%)

Query: 15  KPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK- 73
           +P        P +  S  T    L  KC TS + LKQ  A  +K+    D  V    +  
Sbjct: 3   RPAPPVTPMCPPNSNSNTTHPLSLLPKC-TSLRELKQLQAFAIKTHLHSDLSVLTKFINF 61

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           C  N   ++ + A  +F+ + +P++ ++N++ R     + P R  +L+++++     P+ 
Sbjct: 62  CSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDD 121

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +T+P++ KAC+  +A +EG Q+H   +K GL  +V+V  + I MY     ++ AR++ D 
Sbjct: 122 YTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDK 181

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT----------------------- 230
             +  V+ +NA+I GY +      A  LF+  + +N                        
Sbjct: 182 IWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241

Query: 231 ---------GSYN-------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
                      +N       A+I  +A+ G  ++A  +F  M  +D   WSA+I  Y   
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVL 333
           G+  +A+ +F EM++   +P +     +L AC+  G +++G  + +    +  +      
Sbjct: 302 GHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKH 361

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMHGRAD---DAIELFFKMQ 389
              +VD+  + GRL+ A++    + ++     W  ++     HG  +     IE  F++ 
Sbjct: 362 YGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD 421

Query: 390 REKMRPDRITFACVLSACAHAG 411
            +    D I  +   + CA AG
Sbjct: 422 -DSHGGDYIILS---NLCARAG 439



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 12/302 (3%)

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARF-------GRFEEARKLFNEMNDKDEIT 263
           KC  +   K+L       +  S  ++++ F  F          + A  LF+++   D + 
Sbjct: 29  KCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVL 88

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++ +  GY +      A  +F ++    + P  +    +L ACAS  AL++G  +H    
Sbjct: 89  FNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAI 148

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +  +  +  +   L++MY  C  +D A +VF+ +    V T+NAMI G A   R ++A+ 
Sbjct: 149 KLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALS 208

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF ++Q   ++P  +T   VLS+CA  G +D G     Y+++  G +  V+    ++D+ 
Sbjct: 209 LFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK-NGFNRFVKVDTALIDMY 267

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
            + G L +A  V  +M +    A W A++ A   HG    G +   +  EM       D+
Sbjct: 268 AKCGSLDDAVCVFENMAVRDTQA-WSAMIMAYAIHGH---GLKAVSLFKEMRKAGTEPDE 323

Query: 504 VA 505
           + 
Sbjct: 324 IT 325


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/690 (33%), Positives = 364/690 (52%), Gaps = 84/690 (12%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+  + I  +EFS  ++++       +S    K  H  ++K G+  D + +  LV  +A 
Sbjct: 248 EMVLSGIKPNEFSLSSMVNACTGLRDSSRG--KIIHGYLIKLGYDWDPFSANALVDMYA- 304

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            +  +   A+ VF  + +P++  WN+V+  C+ H    + + L  +M             
Sbjct: 305 -KVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM------------- 350

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
                           Q+H+ ++K  +  D+ V    + MY+    +  AR   +   + 
Sbjct: 351 --------------KRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 396

Query: 198 DVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY---------- 233
           D+I WNA+I GY +  +   A  LF               ST  K+T             
Sbjct: 397 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 456

Query: 234 ---------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                          N++I  + +    E+A ++F E    D ++++++I  Y + G  +
Sbjct: 457 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 516

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL++F EMQ  ++KP +FV S +L ACA+L A +QG  +H H+ +    +D   G +LV
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 576

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MYAKCG +D A + F ++  + + +W+AMIGGLA HG    A++LF +M +E + P+ I
Sbjct: 577 NMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHI 636

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL AC HAG++         M++++G  P  EHY C++DLLGRAG + EA E+++ 
Sbjct: 637 TLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNK 696

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDV 504
           MP E NA+VW ALLGA R H +VE G R  ++L  +EP+                + ++V
Sbjct: 697 MPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENV 756

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           A++R+LM++  +K  PG S I+V   ++ F  GD SH + +EIY  L ++ + +   GY 
Sbjct: 757 AEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYV 816

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P     L D+++ EKE    +HSEKLA+AFG I T  GA IRV KNLRVC DCH+A K I
Sbjct: 817 PMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYI 876

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 877 CKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 157/646 (24%), Positives = 276/646 (42%), Gaps = 106/646 (16%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           PTS    K +     TK   S +   Q HA I KSG   D  +   L+  ++  R   F 
Sbjct: 54  PTSVSYSKLLSQCCTTK---SLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR--XFG 108

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A K+ +   +P++  W++++    ++      +  + EM  +  K N+FT+ +V KACS
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           I +  + G QVH  VV +G  GDV V ++ + MYA       ++++ D+  + +V+ WNA
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 205 LIDGYLK---CGDIEGA-KELFKSTKDKNTGSYNAMISGFARFGRFEEARK------LFN 254
           L   Y++   CG+  G   E+  S    N  S ++M++  A  G  + +R       L  
Sbjct: 229 LFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVN--ACTGLRDSSRGKIIHGYLIK 286

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVL-----AACAS 308
              D D  + +A++D Y K G   +A+ VF ++ Q D +     +  CVL      A   
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           LG + +   +H  + +  +  D  +   LVDMY+KC  L+ A   F  +  K++  WNA+
Sbjct: 347 LGQMKRQ--LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAI 404

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G + +    +A+ LF +M +E +  ++ T + +L + A       GLQ +   +Q++G
Sbjct: 405 ISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCRQVHG 457

Query: 429 ID------PEVEHYGCIVDLLGRAGYLAEAEEV--------------------------- 455
           +        ++     ++D  G+  ++ +AE +                           
Sbjct: 458 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 517

Query: 456 -------ISSMPMEPNAAVWEALLGACRKHGEVEFGERL---------------GKILLE 493
                  +  M ++P+  V  +LL AC      E G++L               G  L+ 
Sbjct: 518 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVN 577

Query: 494 MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
           M  +    DD  +    + ERGI +   S+MI           G   H   ++   +  +
Sbjct: 578 MYAKCGSIDDAGRAFSELTERGIVS--WSAMIG----------GLAQHGHGRQALQLFNQ 625

Query: 554 IIEKLKMEGYSPNS---SQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           +++    EG SPN      VL   +     T  K + E +   FGF
Sbjct: 626 MLK----EGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGF 667



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 89/190 (46%), Gaps = 2/190 (1%)

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           + N + +    P     S +L+ C +  +L  G+ IH H+ ++ +  D  +   L+++Y+
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KC     A K+ ++    ++ +W+A+I G A +G    A+  F +M    ++ +  TF+ 
Sbjct: 103 KCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSS 162

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL AC+    +  G Q    +  + G + +V     +V +  +     +++ +   +P E
Sbjct: 163 VLKACSIVKDLRIGKQVHGVV-VVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP-E 220

Query: 463 PNAAVWEALL 472
            N   W AL 
Sbjct: 221 RNVVSWNALF 230


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/658 (34%), Positives = 350/658 (53%), Gaps = 57/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H +I+ +G   + +V   ++  +A  R    + A K+F  +   ++  W +++    
Sbjct: 165 REIHGLIITNGFESNLFVMTAVMSLYAKCR--QIDNAYKMFERMQHKDLVSWTTLVAGYA 222

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    R + L  +M     KP+  T  ++  A +  +A + G  +H +  ++G    V+
Sbjct: 223 QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVN 282

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG--------------------- 208
           V ++ + MY   G    AR +        V+ WN +IDG                     
Sbjct: 283 VTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEG 342

Query: 209 -----------YLKC---GDIEGA----KELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                       L C   GD+E      K L K   D N    N++IS +++  R + A 
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAA 402

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +FN + +K  +TW+A+I GY ++G  KEAL +F  MQ   IK   F L  V+ A A   
Sbjct: 403 SIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS 461

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
              Q  WIH    R  +  +  + TALVDMYAKCG +  A K+F+ M+ + V TWNAMI 
Sbjct: 462 VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMID 521

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G   HG   + ++LF +MQ+  ++P+ ITF  V+SAC+H+G ++ GL     MQ+ Y ++
Sbjct: 522 GYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLE 581

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HY  +VDLLGRAG L +A   I  MP++P  +V  A+LGAC+ H  VE GE+  + 
Sbjct: 582 PTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQK 641

Query: 491 LLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L +++P               N   D VAK+R  M+++G+   PG S +++   IH F +
Sbjct: 642 LFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYS 701

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G  +HP+ K+IY  L+ + +++K  GY P+   +  D++E+ K+     HSE+LAIAFG 
Sbjct: 702 GSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGL 760

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG T+ + KNLRVC DCH  TK IS V  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 761 LNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 234/524 (44%), Gaps = 48/524 (9%)

Query: 21  ATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           + +IPT  +S +    +L   C TS + L Q    I+K+G + +H     ++      +F
Sbjct: 36  SNSIPTRVYSHRHPSVVLLENC-TSKKELYQILPFIIKNGFYNEHLFQTKVISLFC--KF 92

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            +   A +VF  V      +++ +L+   +++     +  +  M+  + +     Y  + 
Sbjct: 93  GSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLL 152

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           + C      K+G ++H  ++ NG   ++ V ++ + +YA    ++ A ++ +     D++
Sbjct: 153 QLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLV 212

Query: 201 CWNALIDGYLKCGDIEGAKEL--------------------------------------- 221
            W  L+ GY + G  + A +L                                       
Sbjct: 213 SWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYA 272

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           F+S  +      NA++  + + G    AR +F  M  K  ++W+ +IDG  ++G  +EA 
Sbjct: 273 FRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAF 332

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
             F +M  +   P +  +  VL ACA+LG L++G ++H  + +  +  +  +  +L+ MY
Sbjct: 333 ATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMY 392

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           +KC R+D+A  +F +++   V TWNAMI G A +G   +A+ LF  MQ + ++ D  T  
Sbjct: 393 SKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLV 451

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            V++A A    ++R  + +  +     +D  V     +VD+  + G +  A ++   M  
Sbjct: 452 GVITALADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQ- 509

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
           E +   W A++     HG    G+    +  EM+    + +D+ 
Sbjct: 510 ERHVITWNAMIDGYGTHG---VGKETLDLFNEMQKGAVKPNDIT 550


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/666 (34%), Positives = 347/666 (52%), Gaps = 76/666 (11%)

Query: 25   PTSEFSQKTILDILNTKCHT------SWQHLKQAHAVILKSGHF-QDHYVSGTLVKCHAN 77
            PT+  SQ  ++  L     T         HL+  HA ++ SG      +++  L    ++
Sbjct: 1197 PTTGVSQSNMMRPLLRDPTTLLPSLAEASHLRALHAHLVVSGRLASPSHLAAFLASLASS 1256

Query: 78   SRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            +  S   L L       +P  +   N+ +RA      P    + + ++      P+ ++ 
Sbjct: 1257 NHLSYARLVLP-----QRPATLLAHNAFIRALARGPRPCLAFAAFRDL---PLPPDHYSL 1308

Query: 137  PTVFK--------------ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
              + +                +   A  + V  H   V+ G   D HV+S  + MYA  G
Sbjct: 1309 NFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALG 1368

Query: 183  CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
             V  +R    + +  DV+C                                 AM++  A 
Sbjct: 1369 DVASSRAAFAEIACPDVVC-------------------------------VTAMVAALAA 1397

Query: 243  FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
             G  + AR LF+ M  +D + WSA+I GY   G  +EAL +F+EM        +  L  V
Sbjct: 1398 GGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSV 1457

Query: 303  LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
            L ACA +G LD+G W+H +V+   + +   LGTALVDMY+KCG +  A +VFE M  + V
Sbjct: 1458 LTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNV 1517

Query: 363  FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +TW + + GLAM+G   + ++LF +M+   ++P+ ++F  VL  C+ AG++D G      
Sbjct: 1518 YTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDS 1577

Query: 423  MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            M + YG+DP  EHYGC+VDL GRAG L +A   I+ MPMEP+  VW ALL A R H  V+
Sbjct: 1578 MDK-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVD 1636

Query: 483  FGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             G+     LL +E +N              +    V+++R +MK +G+K  PG S I+V+
Sbjct: 1637 LGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVD 1696

Query: 529  GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
            G +HEF  G   HP+  EI LML ++  +L+++GY+ N+ +VLFDI+EEEKE A   HSE
Sbjct: 1697 GKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSE 1756

Query: 589  KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
            KLA+AFG I       IR++KNLRVC DCH   KL+SKVF R+I++RDR R+HHF+ G+C
Sbjct: 1757 KLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGEC 1816

Query: 649  SCNDFW 654
            SC D+W
Sbjct: 1817 SCRDYW 1822


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 338/638 (52%), Gaps = 70/638 (10%)

Query: 47  QHLKQAHAVILKSGHFQD-HYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSV 104
            HL+  HA ++ SG      +++  L    +++  S   L L       +P  +   N+ 
Sbjct: 20  SHLRALHAHLVVSGRLASPSHLAAFLASLASSNHLSYARLVLP-----QRPATLLAHNAF 74

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK--------------ACSITEADK 150
           +RA      P    + + ++      P+ ++   + +                +   A  
Sbjct: 75  IRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARL 131

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           + V  H   V+ G   D HV+S  + MYA  G V  +R    + +  DV+C         
Sbjct: 132 QAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVC--------- 182

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                                   AM++  A  G  + AR LF+ M  +D + WSA+I G
Sbjct: 183 ----------------------VTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAG 220

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y   G  +EAL +F+EM        +  L  VL ACA +G LD+G W+H +V+   + + 
Sbjct: 221 YMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMS 280

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             LGTALVDMY+KCG +  A +VFE M  + V+TW + + GLAM+G   + ++LF +M+ 
Sbjct: 281 IKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEG 340

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             ++P+ ++F  VL  C+ AG++D G      M + YG+DP  EHYGC+VDL GRAG L 
Sbjct: 341 AGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAGRLD 399

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------ 498
           +A   I+ MPMEP+  VW ALL A R H  V+ G+     LL +E +N            
Sbjct: 400 DAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYA 459

Query: 499 --RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
             +    V+++R +MK +G+K  PG S I+V+G +HEF  G   HP+  EI LML ++  
Sbjct: 460 ESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDR 519

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           +L+++GY+ N+ +VLFDI+EEEKE A   HSEKLA+AFG I       IR++KNLRVC D
Sbjct: 520 RLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMD 579

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KL+SKVF R+I++RDR R+HHF+ G+CSC D+W
Sbjct: 580 CHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/622 (35%), Positives = 340/622 (54%), Gaps = 49/622 (7%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++  HA ILK G          LV  +A SR      AL +F+   + ++++++S+L A 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRL--LPDALHLFDETPRRDIYIYSSLLTAV 79

Query: 109 LEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                P   + +   M+  D+  P+ F   +V    +   + + G Q+HAH V +   GD
Sbjct: 80  SHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGD 139

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             VKSS                               L+D Y KCG  +  +++F S   
Sbjct: 140 DVVKSS-------------------------------LVDMYCKCGSPDDGRKVFDSMSA 168

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           KN+  + A++SG+A  GR EEA +LF  M  ++   W+A+I G    G    A+E+F EM
Sbjct: 169 KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM 228

Query: 288 QRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +RD ++    FVLS V+   A L A   G  +H    R     + ++G AL+DMY+KC  
Sbjct: 229 RRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSD 288

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +  A +VFE +  ++V +W  M+ G A HGRA++A+ L+ +M     +P+ +TF  ++ A
Sbjct: 289 ILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYA 348

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG++ +G Q    M+  YGI P ++HY C +DLL R+G+L EAEE++++MP EP+ A
Sbjct: 349 CSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEA 408

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMK 512
            W ALL AC K+ + E   R+   LLE+ P+              N + D VAK+RK M 
Sbjct: 409 TWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMI 468

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
              I+  PG S I+       F  G+      +EI + L++++ +++  GY P++S V+ 
Sbjct: 469 GLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMH 528

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++E EKE     HSE+LA+AFG I + PG+ IRV+KNLRVC DCH+  KLIS++  R I
Sbjct: 529 DLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKI 588

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           +VRD  R+HHF  GKCSC++FW
Sbjct: 589 VVRDSSRFHHFEGGKCSCSEFW 610


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 361/659 (54%), Gaps = 56/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  ILKSG  + + V  +LV  +  ++    + A KVF+ + + +V  WNS++   +
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    + +S++ +M+    + +  T  +VF  C+ +     G  VH+  VK     +  
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
             ++ + MY+  G ++ A+ +  + S   V+ + ++I GY + G    A +LF+  +++ 
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 230 TGS---------------------------------------YNAMISGFARFGRFEEAR 250
                                                      NA++  +A+ G  +EA 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
            +F+EM  KD I+W+ II GY+K+ Y  EAL +FN +  +K   P +  ++CVL ACASL
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            A D+G  IH ++ RN    D  +  +LVDMYAKCG L +A  +F+D+  K++ +W  MI
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  MHG   +AI LF +M++  +  D I+F  +L AC+H+G++D G +    M+    I
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P VEHY CIVD+L R G L +A   I +MP+ P+A +W ALL  CR H +V+  E++ +
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 692

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + E+EP+N               + + V ++RK + +RG++ NPG S I++ G ++ F 
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            GD S+P+ + I   L+K+  ++  EGYSP +   L D +E EKE A   HSEKLA+A G
Sbjct: 753 AGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALG 812

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I++  G  IRV KNLRVC DCH   K +SK+ +R+I++RD  R+H F++G CSC  FW
Sbjct: 813 IISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 236/499 (47%), Gaps = 56/499 (11%)

Query: 57  LKSGHFQDHYVSGT--LVKCHANSRFS-------NFELALKVFNSVHKPNVFVWNSVLRA 107
           LK G   D+++ G   ++  +  S+ S       + + A +VF+ V       WN ++  
Sbjct: 110 LKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNE 169

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  +    I L+ +M+    + + +T+  V K+ S   +   G Q+H  ++K+G    
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGER 229

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-------------- 213
             V +S +  Y     V+ AR++ D+ ++ DVI WN++I+GY+  G              
Sbjct: 230 NSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 289

Query: 214 -----DIEGAKELFKSTKDKNTGSY--------------------NAMISGFARFGRFEE 248
                D+     +F    D    S                     N ++  +++ G  + 
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A+ +F EM+D+  ++++++I GY ++G   EA+++F EM+ + I P  + ++ VL  CA 
Sbjct: 350 AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
              LD+G  +H+ +K N +  D  +  AL+DMYAKCG +  A  VF +M++K++ +WN +
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTI 469

Query: 369 IGGLAMHGRADDAIELF-FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQM 426
           IGG + +  A++A+ LF   ++ ++  PD  T ACVL ACA     D+G +   Y M+  
Sbjct: 470 IGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNG 529

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           Y  D  V +   +VD+  + G L  A  +   +    +   W  ++     HG   FG+ 
Sbjct: 530 YFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHG---FGKE 583

Query: 487 LGKILLEMEPQNRRCDDVA 505
              +  +M       D+++
Sbjct: 584 AIALFNQMRQAGIEADEIS 602



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 187/399 (46%), Gaps = 43/399 (10%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T  +V + C+ +++ K+G +V   +  NG   D ++ S    MY   G + +A ++ D+ 
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY------- 233
                + WN L++   K GD  G+  LFK              S   K+  S        
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 234 ------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                             N++++ + +  R + ARK+F+EM ++D I+W++II+GY  +G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             ++ L VF +M    I+     +  V A CA    +  G  +H    +     +     
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
            L+DMY+KCG LD A  VF +M  + V ++ +MI G A  G A +A++LF +M+ E + P
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D  T   VL+ CA   ++D G +   ++++   G D  V +   ++D+  + G + EAE 
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAEL 453

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           V S M ++ +   W  ++G   K+        L  +LLE
Sbjct: 454 VFSEMRVK-DIISWNTIIGGYSKNCYANEALSLFNLLLE 491



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 172/377 (45%), Gaps = 27/377 (7%)

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D N GS  +++  +   G  +EA ++F+E+  +  + W+ +++   K G +  ++ +F +
Sbjct: 128 DSNLGSKLSLM--YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKK 185

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M    ++   +  SCV  + +SL ++  G  +H  + ++       +G +LV  Y K  R
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQR 245

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D A KVF++M  ++V +WN++I G   +G A+  + +F +M    +  D  T   V + 
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 305

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           CA + +I  G +A+  +        E      ++D+  + G L  A+ V   M  + +  
Sbjct: 306 CADSRLISLG-RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVV 363

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD--------DVAKMRKLMKE----- 513
            + +++    + G    GE + K+  EME +    D        +     +L+ E     
Sbjct: 364 SYTSMIAGYAREGLA--GEAV-KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY--LMLKKIIE-KLKMEGYS----PN 566
             IK N     I V+  + +     GS  + + ++  + +K II     + GYS     N
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480

Query: 567 SSQVLFDIDEEEKETAP 583
            +  LF++  EEK  +P
Sbjct: 481 EALSLFNLLLEEKRFSP 497



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           + + G  + A+++     +  I PR   L  VL  CA   +L  G  + + ++ N   +D
Sbjct: 71  FCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVID 128

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           + LG+ L  MY  CG L  A +VF+++K+++   WN ++  LA  G    +I LF KM  
Sbjct: 129 SNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 391 EKMRPDRITFACV 403
             +  D  TF+CV
Sbjct: 189 SGVEMDSYTFSCV 201


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 318/575 (55%), Gaps = 51/575 (8%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ- 189
           P   +Y  VF+  +     K G QVHAH++  GL     V S  +  YA  G ++ +   
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 190 --------------------------------ILDDGSKSDVICWNALIDGYLKCGDIEG 217
                                           IL  G + D+    +LI  Y KCG+I  
Sbjct: 128 FNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIND 187

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A ++F +   ++  S+NA+++G+ + G  + A  +F  M  ++ ++W+ +I GY++ G  
Sbjct: 188 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 247

Query: 278 KEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           ++AL +F+EM ++   ++P    +  VL ACA L  L++G  IH+   R  +  +A +  
Sbjct: 248 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 307

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           AL  MYAKCG L  A   F+ +   E  +  WN MI   A +G    A+  F +M +  +
Sbjct: 308 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 367

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +PD ITF  +LS C+H+G++D GL+   +M   Y I+P VEHY C+ DLLGRAG LAEA 
Sbjct: 368 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 427

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           +++  MPM    ++W +LL ACRKH  +E  E   + L  +EP+N               
Sbjct: 428 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 487

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R  +V K+R ++K +G K +PG S I++NG  H F  GD SHPQ KEIY+ L+ + EK+K
Sbjct: 488 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 547

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P++S VL DI EEEKE     HSEKLA+AFG +NT     +RV KNLR+C DCH+
Sbjct: 548 AAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHT 607

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A   IS+++ R++IVRD  R+HHF+ G CSC D+W
Sbjct: 608 AMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 123/299 (41%), Gaps = 45/299 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KC----HANSRFSNFEL---------------- 85
           K  H +IL+ G   D YV+ +L+    KC     A   F N  +                
Sbjct: 154 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 213

Query: 86  -----ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPT 138
                AL +F  +   N+  W +++    +     + +SL+ EMV  DS  +PN  T  +
Sbjct: 214 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 273

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD--DGSK 196
           V  AC+     + G Q+H    + GL  +  V  +   MYA  G +  AR   D  + ++
Sbjct: 274 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 333

Query: 197 SDVICWNALIDGYLKCGD----IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
            ++I WN +I  Y   G     +   +E+ ++    +  ++  ++SG +  G  +   K 
Sbjct: 334 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 393

Query: 253 FNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           FN M+    I      ++ + D   + G   EA ++  EM    +     +   +LAAC
Sbjct: 394 FNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEM---PMPAGPSIWGSLLAAC 449



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           N+  WN+++ A   +    + +S + EM+    +P+  T+  +   CS +     G++  
Sbjct: 335 NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 394

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK--------SDVICWNALIDG 208
            H+         +  +  ++ YAC   +      L + SK        +    W +L+  
Sbjct: 395 NHM------STTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 448

Query: 209 YLKCGDIE----GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
             K  ++E     A++LF   + +NTG+Y  + + +A  GR++E  KL
Sbjct: 449 CRKHRNLEMAETAARKLF-VLEPENTGNYVLLSNMYAEAGRWQEVDKL 495


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/637 (35%), Positives = 340/637 (53%), Gaps = 83/637 (13%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W   LR+    N+    IS Y EM    ++P+ F +P V KA S  +  K G Q+HA  V
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 161 KNGL-----------------CGDVHVKS----SGIQMYACFGCVNKARQILDDGSKSDV 199
           K G                  CG +  K+    + + MYA  G V+ ++ + +     D+
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 179

Query: 200 ICWNALIDGYLKCGDIEGAKELFK------------------------------------ 223
           + WN +I  + +      A   F+                                    
Sbjct: 180 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 239

Query: 224 ----STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
               +   +N+   +A++  +    + E  R++F+ +  +    W+A+I GY ++G  ++
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 280 ALEVFNEMQR-DKIKPRKFVLSCVLAACA-SLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           AL +F EM +   + P    ++ V+ AC  SL A+ +G  IH +  RN +  D  +G+AL
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR--- 394
           VDMYAKCG L+++ +VF +M  K V TWN +I    MHG+ ++A+ELF  M  E  R   
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 395 --PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
             P+ +TF  V +AC+H+G+I  GL     M+  +G++P  +HY C+VDLLGRAG L EA
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 453 EEVISSMPME-PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR----------- 500
            E++++MP E      W +LLGACR H  VE GE   K LL +EP               
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 539

Query: 501 ---CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
               +   ++RK M++ G+K  PG S I+    +H+F  GD SHPQ ++++  L+ + EK
Sbjct: 540 AGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEK 599

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ EGY P++S VL ++DE+EKE     HSEKLAIAFG +NT PG TIRV KNLRVC DC
Sbjct: 600 MRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 659

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+ATK ISK+ +R+IIVRD  R+HHF+ G CSC D+W
Sbjct: 660 HAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 167/386 (43%), Gaps = 72/386 (18%)

Query: 50  KQAHAVILKSGHF-QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           K+ HA +L++    ++ +V   LV  + N R    E   +VF+ +    + +WN+++   
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCR--QVESGRRVFDHILGRRIELWNAMISGY 291

Query: 109 LEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSIT-EADKEGVQVHAHVVKNGLCG 166
             +    + + L+ EM+ V    PN  T  +V  AC  +  A  +G ++HA+ ++N L  
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS 351

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D+ V S+ + MYA  GC+N +R++ ++    +VI WN LI      G  E A ELFK+  
Sbjct: 352 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNM- 410

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                         A  GR  EA+         +E+T+  +    +  G   E L +F  
Sbjct: 411 -------------VAEAGRGGEAK--------PNEVTFITVFAACSHSGLISEGLNLFYR 449

Query: 287 MQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M+ D  ++P     +CV                                   VD+  + G
Sbjct: 450 MKHDHGVEPTSDHYACV-----------------------------------VDLLGRAG 474

Query: 346 RLDMAWKVFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE--KMRPDRITFA 401
           +L+ A+++   M  +  +V  W++++G   +H      +EL     +    + P+  +  
Sbjct: 475 QLEEAYELVNTMPAEFDKVGAWSSLLGACRIH----QNVELGEVAAKNLLHLEPNVASHY 530

Query: 402 CVLSAC-AHAGMIDRGLQALTYMQQM 426
            +LS   + AG+ ++ ++    M+QM
Sbjct: 531 VLLSNIYSSAGLWNKAMEVRKNMRQM 556



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 21/186 (11%)

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +   +W   +   T+   ++EA+  + EM     +P  F    VL A + L  L  G  I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 319 HDHVKR-----NSICVDAVL----------------GTALVDMYAKCGRLDMAWKVFEDM 357
           H    +     +S+ V   L                  AL+ MYAK GR+D +  +FE  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             +++ +WN MI   +   R  +A+  F  M  E +  D +T A VL AC+H   +D G 
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 418 QALTYM 423
           +   Y+
Sbjct: 235 EIHAYV 240


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/622 (35%), Positives = 340/622 (54%), Gaps = 49/622 (7%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++  HA ILK G          LV  +A SR      AL +F+   + ++++++S+L A 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRL--LPDALHLFDETPRRDIYIYSSLLTAV 161

Query: 109 LEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                P   + +   M+  D+  P+ F   +V    +   + + G Q+HAH V +   GD
Sbjct: 162 SHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGD 221

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             VKSS                               L+D Y KCG  +  +++F S   
Sbjct: 222 DVVKSS-------------------------------LVDMYCKCGSPDDGRKVFDSMSA 250

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           KN+  + A++SG+A  GR EEA +LF  M  ++   W+A+I G    G    A+E+F EM
Sbjct: 251 KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM 310

Query: 288 QRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +RD ++    FVLS V+   A L A   G  +H    R     + ++G AL+DMY+KC  
Sbjct: 311 RRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSD 370

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +  A +VFE +  ++V +W  M+ G A HGRA++A+ L+ +M     +P+ +TF  ++ A
Sbjct: 371 ILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYA 430

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG++ +G Q    M+  YGI P ++HY C +DLL R+G+L EAEE++++MP EP+ A
Sbjct: 431 CSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEA 490

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMK 512
            W ALL AC K+ + E   R+   LLE+ P+              N + D VAK+RK M 
Sbjct: 491 TWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMI 550

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
              I+  PG S I+       F  G+      +EI + L++++ +++  GY P++S V+ 
Sbjct: 551 GLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMH 610

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++E EKE     HSE+LA+AFG I + PG+ IRV+KNLRVC DCH+  KLIS++  R I
Sbjct: 611 DLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKI 670

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           +VRD  R+HHF  GKCSC++FW
Sbjct: 671 VVRDSSRFHHFEGGKCSCSEFW 692


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 324/572 (56%), Gaps = 58/572 (10%)

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           P V KAC       +G ++H  V+K G   DV V +S + MY+ FG V  AR++ DD   
Sbjct: 1   PPVVKACGDL---LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 197 SDVICWNALIDGYLKCGD------------IEGAK----------ELFKSTKDKNTGSY- 233
            D   WNA+I GY + G+            +EG K           +     D  +G   
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 234 ----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                           NA+I+ +A+FG    A+K+F  +  KD ++W+ +I GY ++G  
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLA 176

Query: 278 KEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            EA+EV+  M+  ++I P +     +L A + +GAL QG+ IH  V +N +  D  +GT 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY KCG+LD A  +F  +  K    WNAMI    +HG  + A+ELF +M+ E+++PD
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  +LSAC+H+G++         M++ YGI P ++HYGC+VDL GRAG L  A   I
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
             MP++P+A+ W ALL ACR HG +E G+   + L E++ +N               + +
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWE 416

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
            V  +R L ++RG++ NPG S I +N  +  F TG+ +HP+ +EIY  L+ +  K+K  G
Sbjct: 417 GVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIG 476

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+   VL D++E+EKE     HSE+LAIA+G I+T P   IR+ KNLRVC DCH+ TK
Sbjct: 477 YVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTK 536

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IS + +R+IIVRD  R+HHF+ G CSC D+W
Sbjct: 537 FISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 175/389 (44%), Gaps = 48/389 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H ++LK G   D +V+ +LV  H  SRF     A K+F+ +   +   WN+++    
Sbjct: 14  KKIHCLVLKLGFEWDVFVAASLV--HMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYC 71

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + +  EM     K +  T  +V   C+       G  +H +V+K+GL  ++ 
Sbjct: 72  QNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELF 131

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           V ++ I MYA FG +  A+++     K DV+ WN LI GY + G    A E++   ++  
Sbjct: 132 VSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHE 190

Query: 228 ---KNTGSY-----------------------------------NAMISGFARFGRFEEA 249
               N G++                                     +I  + + G+ ++A
Sbjct: 191 EIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDA 250

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             LF ++  K+ + W+A+I  Y   G  ++ALE+F EM+ +++KP       +L+AC+  
Sbjct: 251 ISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHS 310

Query: 310 GALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G +    W  + ++    I         +VD++ + G L+MA+   + M ++ +   W A
Sbjct: 311 GLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGA 370

Query: 368 MIGGLAMHGRAD---DAIELFFKMQREKM 393
           ++    +HG  +    A E  F++  E +
Sbjct: 371 LLNACRIHGNIELGKHASERLFEVDSENV 399



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 190/442 (42%), Gaps = 66/442 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ++K G   + +VS  L+  +A  +F +   A KVF  + K +V  WN+++    
Sbjct: 115 KLIHLYVIKHGLEFELFVSNALINMYA--KFGSLGHAQKVFGLLIK-DVVSWNTLITGYA 171

Query: 110 EHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           ++      I +Y  M   +   PN+ T+ ++  A S   A ++G+++H  V+KN L  DV
Sbjct: 172 QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDV 231

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V +  I MY   G ++ A  +     + + + WNA+I  Y   GD E A ELF+  K +
Sbjct: 232 FVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE 291

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
                  ++ +++S  +  G   +A+  FN M ++  I      +  ++D + + G  + 
Sbjct: 292 RVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEM 351

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV---LGTA 336
           A   FN +++  I+P       +L AC   G ++ G     H       VD+        
Sbjct: 352 A---FNFIKKMPIQPDASAWGALLNACRIHGNIELG----KHASERLFEVDSENVGYYVL 404

Query: 337 LVDMYAKCGR---LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           L ++YA  G+   +D    +  D  +++   W+++I         ++ +++F+   +   
Sbjct: 405 LSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSII--------LNNKVDVFYTGNQTHP 456

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP------------EVEHYGCIVD 441
           + + I                R L+ LT   +  G  P            E EH      
Sbjct: 457 KCEEIY---------------RELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHI----- 496

Query: 442 LLGRAGYLAEAEEVISSMPMEP 463
           L+G +  LA A  +IS+ P  P
Sbjct: 497 LMGHSERLAIAYGIISTSPKTP 518


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 343/636 (53%), Gaps = 88/636 (13%)

Query: 44  TSWQHLKQAHAVILKSGH-FQDH--YVSGTLVKCHANSRFSNFELAL--KVFNSVHKPNV 98
           TS + L Q HAV +K+G   Q H  +V+  L  C      +   LA   +VF+ +  P  
Sbjct: 39  TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98

Query: 99  FVWNSVL-----RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
            +W + L     R             ++  M+     P+ +T+ ++ KAC+   A +EG 
Sbjct: 99  VIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGR 158

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q H   VK G     +V  +                               LI+ Y +CG
Sbjct: 159 QAHGVAVKAGAAEHEYVAPT-------------------------------LINMYAECG 187

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
           D+  A                               R +F+ M+ +  ++++A+I    +
Sbjct: 188 DVRAA-------------------------------RVMFDRMDGECVVSYNAMITASVR 216

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
                EAL +F EMQ   +KP    L  VL+ACA LGAL+ G WIHD++++  +     +
Sbjct: 217 SSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKV 276

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            TAL+DMYAKCG L+ A  VF+DM+ ++   W+ M+   A HG   +AI +F +M+++ M
Sbjct: 277 NTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGM 336

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           +PD +TF  VL AC+H+GM+  GLQ    M++ YGI   ++HYGC+ DLL R+G L  A 
Sbjct: 337 KPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAY 395

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME--------------PQNR 499
           + I  +P++P A +W  LL AC  HG+V+ G+R+ + +LE++                  
Sbjct: 396 KFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTG 455

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R +++  +RKLM E+G+   PG S I+++ ++HEF  GDGSHP  +E   M+ ++IE+LK
Sbjct: 456 RWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLK 515

Query: 560 MEGYSPNSSQVL-FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           + GY PN+S V   ++ EEEK T+ +YHSEKLAI+FG +NT PG T+R++KNLRVC DCH
Sbjct: 516 LVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCH 575

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           S  KL+S VF R II+RD  R+HHF +G CSC D+W
Sbjct: 576 SMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/659 (33%), Positives = 361/659 (54%), Gaps = 56/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  ILKSG  + + V  +LV  +  ++    + A KVF+ + + +V  WNS++   +
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTERDVISWNSIINGYV 121

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    + +S++ +M+    + +  T  +VF  C+ +     G  VH+  VK     +  
Sbjct: 122 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 181

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
             ++ + MY+  G ++ A+ +  + S   V+ + ++I GY + G    A +LF+  +++ 
Sbjct: 182 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 241

Query: 230 TGS---------------------------------------YNAMISGFARFGRFEEAR 250
                                                      NA++  +A+ G  +EA 
Sbjct: 242 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 301

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
            +F+EM  KD I+W+ II GY+K+ Y  EAL +FN +  +K   P +  ++CVL ACASL
Sbjct: 302 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 361

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            A D+G  IH ++ RN    D  +  +LVDMYAKCG L +A  +F+D+  K++ +W  MI
Sbjct: 362 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 421

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G  MHG   +AI LF +M++  +  D I+F  +L AC+H+G++D G +    M+    I
Sbjct: 422 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 481

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P VEHY CIVD+L R G L +A   I +MP+ P+A +W ALL  CR H +V+  E++ +
Sbjct: 482 EPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 541

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + E+EP+N               + + V ++RK + +RG++ NPG S I++ G ++ F 
Sbjct: 542 KVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 601

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            GD S+P+ + I   L+K+  ++  EGYSP +   L D +E EKE A   HSEKLA+A G
Sbjct: 602 AGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALG 661

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I++  G  IRV KNLRVC DCH   K +SK+ +R+I++RD  R+H F++G CSC  FW
Sbjct: 662 IISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 217/457 (47%), Gaps = 47/457 (10%)

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F+ V       WN ++    +  +    I L+ +M+    + + +T+  V K+ S   + 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G Q+H  ++K+G      V +S +  Y     V+ AR++ D+ ++ DVI WN++I+GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 210 LKCG-------------------DIEGAKELFKSTKDKNTGSY----------------- 233
           +  G                   D+     +F    D    S                  
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 234 ---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
              N ++  +++ G  + A+ +F EM+D+  ++++++I GY ++G   EA+++F EM+ +
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            I P  + ++ VL  CA    LD+G  +H+ +K N +  D  +  AL+DMYAKCG +  A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF-FKMQREKMRPDRITFACVLSACAH 409
             VF +M++K++ +WN +IGG + +  A++A+ LF   ++ ++  PD  T ACVL ACA 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 410 AGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
               D+G +   Y M+  Y  D  V +   +VD+  + G L  A  +   +    +   W
Sbjct: 361 LSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIA-SKDLVSW 417

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
             ++     HG   FG+    +  +M       D+++
Sbjct: 418 TVMIAGYGMHG---FGKEAIALFNQMRQAGIEADEIS 451



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 158/351 (45%), Gaps = 25/351 (7%)

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F+E+  +  + W+ +++   K G +  ++ +F +M    ++   +  SCV  + +SL ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
             G  +H  + ++       +G +LV  Y K  R+D A KVF++M  ++V +WN++I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
             +G A+  + +F +M    +  D  T   V + CA + +I  G +A+  +        E
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSRE 179

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
                 ++D+  + G L  A+ V   M  + +   + +++    + G    GE + K+  
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVSYTSMIAGYAREGLA--GEAV-KLFE 235

Query: 493 EMEPQNRRCD--------DVAKMRKLMKE-----RGIKTNPGSSMIDVNGVIHEFRTGDG 539
           EME +    D        +     +L+ E       IK N     I V+  + +     G
Sbjct: 236 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 295

Query: 540 SHPQVKEIY--LMLKKIIE-KLKMEGYS----PNSSQVLFDIDEEEKETAP 583
           S  + + ++  + +K II     + GYS     N +  LF++  EEK  +P
Sbjct: 296 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 346


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/656 (33%), Positives = 356/656 (54%), Gaps = 56/656 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  +LK G   +  V  +L+   A  +F   E A  +F+ + +P+V  WNS++  C+
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 272

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      + ++ +M+ +  + +  T  +V  AC+       G  +H   VK     +V 
Sbjct: 273 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVV 332

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
             ++ + MY+  G +N A ++      + ++ W ++I  Y++ G    A  LF   + K 
Sbjct: 333 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 229 --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                 N    NA+I+ +A+ G  EEAR
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+++  KD ++W+ +I GY+++    EALE+F +MQ+ + KP    ++CVL ACA L 
Sbjct: 453 LVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLA 511

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           ALD+G  IH H+ R     D  +  ALVDMYAKCG L +A  +F+ +  K++ +W  MI 
Sbjct: 512 ALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G  MHG  ++AI  F +M+   + PD  +F+ +L+AC+H+G+++ G +    M+   G++
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVE 631

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHY C+VDLL R G L++A + I SMP++P+  +W  LL  CR H +V+  E++ + 
Sbjct: 632 PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEH 691

Query: 491 LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           + E+EP N R               ++V K+RK M++RG K NPG S I+V G  + F  
Sbjct: 692 IFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 751

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           G+  HPQ K+I ++L K+  +++ E YS     VL + D+ EKE     HSEK A+AFG 
Sbjct: 752 GNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGI 811

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           +N  PG T+RV KN RVC DCH   K +SK  K +I++RD  R+HHF++G CSC D
Sbjct: 812 LNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 230/471 (48%), Gaps = 48/471 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H+VI+ +G   D  +   LV  + N    +     K+F+ +    VF+WN ++    
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYVNC--GDLVQGRKIFDKIMNDKVFLWNLLMSEYA 171

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       +SL+ +M  +    N +T+  V K  +     KE  +VH +V+K G   +  
Sbjct: 172 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 231

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V +S I  Y  FG V  A  + D+ S+ DV+ WN++I+G +  G      E+F       
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 291

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+   +     N ++  +++ G    A 
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 351

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F +M D   ++W++II  Y ++G Y +A+ +F+EMQ   ++P  + ++ ++ ACA   
Sbjct: 352 EVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 411

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +LD+G  +H +V +N +  +  +  AL++MYAKCG ++ A  VF  + +K++ +WN MIG
Sbjct: 412 SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 471

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGI 429
           G + +   ++A+ELF  MQ++  +PD IT ACVL ACA    +D+G +   + +++ Y  
Sbjct: 472 GYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 530

Query: 430 DPEVEHYGC-IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           D    H  C +VD+  + G L  A+ +   +P + +   W  ++     HG
Sbjct: 531 DL---HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 577



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 179/379 (47%), Gaps = 41/379 (10%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           +Y +V + C+  ++ ++G +VH+ ++ NG+  D  + +  + MY   G + + R+I D  
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--------------------------- 227
               V  WN L+  Y K G+   +  LFK  +                            
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 228 ------------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                        NT   N++I+ + +FG  E A  LF+E+++ D ++W+++I+G   +G
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           +    LE+F +M    ++     L  VL ACA++G L  G  +H    +     + V   
Sbjct: 276 FSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN 335

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
            L+DMY+KCG L+ A +VF  M    + +W ++I      G   DAI LF +MQ + +RP
Sbjct: 336 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP 395

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D  T   ++ ACA +  +D+G    +Y+ +  G+   +     ++++  + G + EA  V
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLV 454

Query: 456 ISSMPMEPNAAVWEALLGA 474
            S +P++ +   W  ++G 
Sbjct: 455 FSKIPVK-DIVSWNTMIGG 472



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 129/263 (49%), Gaps = 5/263 (1%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +   G   + RK+F+++ +     W+ ++  Y K G ++E++ +F +MQ+  +    +  
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 198

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           +CVL   A+LG + +   +H +V +     +  +  +L+  Y K G ++ A  +F+++  
Sbjct: 199 TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 258

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
            +V +WN+MI G  ++G + + +E+F +M    +  D  T   VL ACA+ G +  G +A
Sbjct: 259 PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLG-RA 317

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           L           EV     ++D+  + G L  A EV   M  +     W +++ A  + G
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREG 376

Query: 480 EVEFGERLGKILLEMEPQNRRCD 502
              + + +G +  EM+ +  R D
Sbjct: 377 --LYSDAIG-LFDEMQSKGVRPD 396



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +A I+ + + G  + A+E+  + +  ++    +    VL  CA   +L+ G  +H  +  
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N I VD  LG  LV MY  CG L    K+F+ +   +VF WN ++   A  G   +++ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F KMQ+  +  +  TF CVL   A  G +    +   Y+ ++ G          ++    
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL-GFGSNTAVVNSLIAAYF 241

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + G +  A  +   +  EP+   W +++  C  +G
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/657 (34%), Positives = 346/657 (52%), Gaps = 57/657 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            AHAV+   G   + +V+  LV  +   +FS    A KVF+ +   +  +WN+++   + 
Sbjct: 126 HAHAVV--DGFDSNLFVASALVDLYC--KFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      + ++ +MV    + +  T  TV  A +  +  K G+ +    +K G   D +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTK 226
            +  I +++    V+ AR +     K D++ +NALI G+   G+ E A    +EL  S +
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 227 DKNTGSY-----------------------------------NAMISGFARFGRFEEARK 251
             ++ +                                     A+ + ++R    + AR+
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LF+E ++K    W+A+I GY + G  + A+ +F EM   +  P    ++ +L+ACA LGA
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L  G  +H  +K  ++  +  + TAL+DMYAKCG +  A ++F+    K   TWN MI G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             +HG  D+A++LF +M     +P  +TF  VL AC+HAG++  G +    M   Y I+P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             EHY C+VD+LGRAG L +A E I  MP+EP  AVW  LLGAC  H +        + L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 492 LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            E++P N              R     A +R+ +K+R +   PG ++I+VNG  H F  G
Sbjct: 602 FELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCG 661

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SH Q   IY  L+++  K++  GY   +   L D++EEEKE     HSEKLAIAFG I
Sbjct: 662 DRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLI 721

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            T+PG  IR+IKNLRVC DCH+ATK ISK+ +R I+VRD  R+HHF++G CSC D+W
Sbjct: 722 TTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 228/507 (44%), Gaps = 53/507 (10%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           + S+ T+L +++  C  ++ HL + HA ++++G+  D      L +   +   +    AL
Sbjct: 5   DISRNTLLALISKAC--TFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARAL 62

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSIT 146
             F SV KP++F++N +++     +     IS Y+ ++      P+ FTY     A S +
Sbjct: 63  --FFSVPKPDIFLFNVLIKG-FSFSPDASSISFYTHLLKNTTLSPDNFTYAF---AISAS 116

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
             D  G+ +HAH V +G   ++ V S+ + +Y  F  V  AR++ D     D + WN +I
Sbjct: 117 PDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMI 176

Query: 207 DGYLKCGDIEGAKELFKSTK------DKNTGS---------------------------- 232
            G ++    + + ++FK         D  T +                            
Sbjct: 177 TGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH 236

Query: 233 -----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                   +IS F++    + AR LF  +   D ++++A+I G++ +G  + A++ F E+
Sbjct: 237 FDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL 296

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
                +     +  ++   +  G L     I     ++   +   + TAL  +Y++   +
Sbjct: 297 LVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEI 356

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           D+A ++F++   K V  WNAMI G A  G  + AI LF +M   +  P+ +T   +LSAC
Sbjct: 357 DLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           A  G +  G +++  + +   ++  +     ++D+  + G ++EA ++   +  E N   
Sbjct: 417 AQLGALSFG-KSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF-DLTSEKNTVT 474

Query: 468 WEALLGACRKHGEVEFGERLGKILLEM 494
           W  ++     HG   +G+   K+  EM
Sbjct: 475 WNTMIFGYGLHG---YGDEALKLFNEM 498


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 360/714 (50%), Gaps = 121/714 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLV----KC----HANSRFSNFELALKVFNSVHK--PNVFVWN 102
           HA + +SG   + +V   +V    KC    HA++ F +           H+   ++  WN
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL---------CHRGIQDLVSWN 332

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           SV+ A +  ++    ++L+ +M       P+  +   +  AC+   A   G QVH   ++
Sbjct: 333 SVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIR 392

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQIL------------------------------ 191
           +GL  DV V ++ + MYA  G + +A ++                               
Sbjct: 393 SGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSL 452

Query: 192 -----DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD------------------- 227
                ++  + DV+ W A+I GY + G    A ++F+   D                   
Sbjct: 453 FERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVS 512

Query: 228 -------KNTGSY---------------------NAMISGFARFGRFEEARKLFNEMN-- 257
                  K T  Y                     N +I  +A+    E ARK+F+ ++  
Sbjct: 513 VGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPK 572

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDK-IKPRKFVLSCVLAACASLGALDQG 315
           D+D +TW+ +I GY + G    AL++F+ M + DK IKP  F LSC L ACA L AL  G
Sbjct: 573 DRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFG 632

Query: 316 IWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
             +H +V RN    V   +   L+DMY+K G +D A  VF++M  +   +W +++ G  M
Sbjct: 633 RQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGM 692

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HGR +DA+ +F +M++  + PD ITF  VL AC+H+GM+D G+     M + +G+DP  E
Sbjct: 693 HGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPE 752

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDL GRAG L EA ++I+ MPMEP   VW ALL ACR H  VE GE     LLE+
Sbjct: 753 HYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLEL 812

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           E  N              RR  DVA++R  MK  GIK  PG S I     +  F  GD S
Sbjct: 813 ESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRS 872

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HPQ ++IY  L  +I+++K  GY P +S  L D+D+EEK      HSEKLA+A+G +   
Sbjct: 873 HPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLH 932

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           P A IR+ KNLR+C DCHSA   ISK+ + +II+RD  R+HHF+NG CSC  +W
Sbjct: 933 PRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 96/490 (19%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +VF WN ++R  L    P  V +LY +M  +   P+ +T+P VFKAC+   +   G  +H
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD---GSKSDVICWNALIDGYLKCG 213
           A V ++G   +V V ++ + MY   G +  A  + DD       D++ WN+++  Y+   
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWAS 342

Query: 214 DIEGAKELFKSTKDKNTGSY---------------------------------------- 233
           D   A  LF     ++  S                                         
Sbjct: 343 DANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVG 402

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI- 292
           NA++  +A+ G+ EEA K+F  M  KD ++W+A++ GY++ G  + AL +F  M  + I 
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIE 462

Query: 293 ----------------------------------KPRKFVLSCVLAACASLGALDQGIWI 318
                                             +P    L  +L+AC S+GAL  G   
Sbjct: 463 LDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKET 522

Query: 319 HDHVKRNSICVDAV--------LGTALVDMYAKCGRLDMAWKVFEDM--KMKEVFTWNAM 368
           H +  +  + +D          +   L+DMYAKC   ++A K+F+ +  K ++V TW  M
Sbjct: 523 HCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVM 582

Query: 369 IGGLAMHGRADDAIELF---FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           IGG A HG A++A++LF   FKM +  ++P+  T +C L ACA    +  G Q   Y+ +
Sbjct: 583 IGGYAQHGDANNALQLFSGMFKMDKS-IKPNDFTLSCALVACARLAALRFGRQVHAYVLR 641

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            +     +    C++D+  ++G +  A+ V  +MP + NA  W +L+     HG    GE
Sbjct: 642 NFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMHGR---GE 697

Query: 486 RLGKILLEME 495
              ++  EM 
Sbjct: 698 DALRVFDEMR 707



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 166/419 (39%), Gaps = 91/419 (21%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC- 108
           +Q H   ++SG   D +V   +V  +A  +    E A KVF  +   +V  WN+++    
Sbjct: 384 RQVHGFSIRSGLVDDVFVGNAVVDMYA--KCGKMEEANKVFQRMKFKDVVSWNAMVTGYS 441

Query: 109 ----LEH------------------------------NEPWRVISLYSEMVGVDSKPNKF 134
               LEH                               +    + ++ +M    S+PN  
Sbjct: 442 QAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVV 501

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGL--------CGDVHVKSSGIQMYACFGCVNK 186
           T  ++  AC    A   G + H + +K  L          D+ V +  I MYA       
Sbjct: 502 TLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV 561

Query: 187 ARQILDDGSKS--DVICWNALIDGYLKCGDIEGAKELF-------KSTKD---------- 227
           AR++ D  S    DV+ W  +I GY + GD   A +LF       KS K           
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALV 621

Query: 228 -----------KNTGSY--------------NAMISGFARFGRFEEARKLFNEMNDKDEI 262
                      +   +Y              N +I  +++ G  + A+ +F+ M  ++ +
Sbjct: 622 ACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAV 681

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W++++ GY   G  ++AL VF+EM++  + P       VL AC+  G +D GI   + +
Sbjct: 682 SWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRM 741

Query: 323 KRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMHGRAD 379
            ++  +         +VD++ + GRL  A K+  +M M+     W A++    +H   +
Sbjct: 742 SKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVE 800



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 22/220 (10%)

Query: 50  KQAHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q HA +L++ +     +V+  L+  ++ S   + + A  VF+++ + N   W S++   
Sbjct: 633 RQVHAYVLRNFYGSVMLFVANCLIDMYSKS--GDVDTAQIVFDNMPQRNAVSWTSLMTGY 690

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             H      + ++ EM  V   P+  T+  V  ACS +     G+        N +  D 
Sbjct: 691 GMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFF-----NRMSKDF 745

Query: 169 HVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIE---- 216
            V   G + YAC        G + +A +++++   +   + W AL+       ++E    
Sbjct: 746 GV-DPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEF 804

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
            A  L +  +  N GSY  + + +A   R+++  ++   M
Sbjct: 805 AANRLLE-LESGNDGSYTLLSNIYANARRWKDVARIRYTM 843


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 321/578 (55%), Gaps = 54/578 (9%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P +  Y  +   C+     K+G  +HAH+  +    D+ + +  + MYA  G + +A+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--------------------------- 222
           + D     D++ W  LI GY + G    A  LF                           
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 223 ------------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                       K   D N    ++++  +AR+    EA+ +FN +  K+ ++W+A+I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           + + G  +  + +F +M R   +P  F  S V  ACAS G+L+QG W+H HV ++     
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI 341

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           A +G  L+DMYAK G +  A KVF  +  +++ +WN++I G A HG   +A++LF +M +
Sbjct: 342 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK 401

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
            K++P+ ITF  VL+AC+H+G++D G      M++ + I+ +V H+  +VDLLGRAG L 
Sbjct: 402 AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLN 460

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA + I  MP++P AAVW ALLG+CR H  ++ G    + + E++P +            
Sbjct: 461 EANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYA 520

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R  D AK+RK+MKE G+K  P  S +++   +H F   D SHP  +EI  M +KI  
Sbjct: 521 SAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISG 580

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           K+K  GY P++S VLF ++++++E   +YHSEKLA+AF  + T PG TIR+ KN+R+C D
Sbjct: 581 KIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGD 640

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CHSA K  S+V  R+IIVRD  R+HHF +G CSC D+W
Sbjct: 641 CHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 189/391 (48%), Gaps = 44/391 (11%)

Query: 31  QKTILDILNTKCHTSWQHLKQAHAVI--LKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           ++T+   +  KC T  + LKQ  A+   ++S  F+D  V    +  +  ++  + E A  
Sbjct: 104 ERTLYSKMLNKC-TYLRKLKQGRAIHAHIQSSTFEDDLVLLNFI-LNMYAKCGSLEEAQD 161

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ +   ++  W  ++    +  +    ++L+ +M+ +  +PN+FT  ++ KA     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           D  G Q+HA  +K G   +VHV SS + MYA +  + +A+ I +  +  +V+ WNALI G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 209 YLKCGDIEGAKELFKS-----------------TKDKNTGSY------------------ 233
           + + G+ E    LF                   T   ++GS                   
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI 341

Query: 234 ----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
               N +I  +A+ G  ++A+K+F  +  +D ++W++II GY + G   EAL++F +M +
Sbjct: 342 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK 401

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
            K++P +     VL AC+  G LD+G +  + +K++ I         +VD+  + GRL+ 
Sbjct: 402 AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNE 461

Query: 350 AWKVFEDMKMKEV-FTWNAMIGGLAMHGRAD 379
           A K  E+M +K     W A++G   MH   D
Sbjct: 462 ANKFIEEMPIKPTAAVWGALLGSCRMHKNMD 492



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           +EF+  ++L    T    S  H +Q HA  LK G+  + +V  +L+  +A  R+++   A
Sbjct: 205 NEFTLSSLLKASGTG--PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYA--RWAHMREA 260

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
             +FNS+   NV  WN+++       E   V+ L+ +M+    +P  FTY +VF AC+ +
Sbjct: 261 KVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASS 320

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            + ++G  VHAHV+K+G     ++ ++ I MYA  G +  A+++     K D++ WN++I
Sbjct: 321 GSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSII 380

Query: 207 DGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
            GY + G    A +LF    K+    N  ++ ++++  +  G  +E +  F E+  K +I
Sbjct: 381 SGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYF-ELMKKHKI 439

Query: 263 TWS-----AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
                    ++D   + G   EA +   EM    IKP   V   +L +C     +D G++
Sbjct: 440 EAQVAHHVTVVDLLGRAGRLNEANKFIEEM---PIKPTAAVWGALLGSCRMHKNMDLGVY 496

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
             + +       D+     L ++YA  GRL  A KV + MK
Sbjct: 497 AAEQIFELDPH-DSGPHVLLSNIYASAGRLSDAAKVRKMMK 536



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L V + +    ++P + + S +L  C  L  L QG  IH H++ ++   D VL   +++M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG L+ A  +F+ M  K++ +W  +I G +  G+A +A+ LF KM     +P+  T 
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           + +L A    G  D   + L      YG D  V     ++D+  R  ++ EA+ + +S+ 
Sbjct: 210 SSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            + N   W AL+    + GE   GE + ++ L+M  Q
Sbjct: 269 AK-NVVSWNALIAGHARKGE---GEHVMRLFLQMLRQ 301


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/446 (44%), Positives = 290/446 (65%), Gaps = 19/446 (4%)

Query: 227 DKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
           ++N G  N M+  +A+ G    E ARK+F+ M ++D ++W+++I  Y ++G   EA+ ++
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 285 NEMQR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++M      IK     LS VL ACA  GA+  G  IH+ V R  +  +  +GT++VDMY+
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCGR++MA + F  +K K + +W+AMI G  MHGR  +A+E+F +M+R  +RP+ ITF  
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL+AC+HAG++D G      M+Q +GI+  VEHYGC+VDLLGRAG L EA  +I  M ++
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMR 508
           P+AA+W ALL ACR H  VE  E   K L E++  N              R   DV ++R
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIR 528

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
            L+K R I+  PG S  ++ G I+ F  GD SHPQ  EIY  L+K++E+++  GY PN+ 
Sbjct: 529 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 588

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL D+DEEEKE+A + HSEKLA+AF  +N+ P + I +IKNLRVC DCH+A K I+K+ 
Sbjct: 589 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 648

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+II+RD  R+HHF++G CSC D+W
Sbjct: 649 EREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 67/327 (20%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA+I K G  ++  V  T++  +A     + E+A KVF+++ + +V  WNS++    ++ 
Sbjct: 221 HALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNG 279

Query: 113 EPWRVISLYSEM--VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                I LYS+M  VG   K N      V  AC+   A + G ++H  VV+ GL  +V+V
Sbjct: 280 MSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYV 339

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S                               ++D Y KCG +E A   F+  K+KN 
Sbjct: 340 GTS-------------------------------IVDMYSKCGRVEMASRAFRKIKEKNI 368

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S++AMI+G+   GR +E                               ALE+F EM+R 
Sbjct: 369 LSWSAMITGYGMHGRGQE-------------------------------ALEIFTEMKRS 397

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDM 349
            ++P       VLAAC+  G LD+G + ++ +K+   I         +VD+  + G LD 
Sbjct: 398 GLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDE 457

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           A+ + ++MK+K +   W A++    +H
Sbjct: 458 AYSLIKEMKVKPDAAIWGALLSACRIH 484


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 336/582 (57%), Gaps = 58/582 (9%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P++  Y  + K C++    K+G  VH H++ +    D+ +K+S + MYA  G +  ARQ
Sbjct: 88  EPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQ 147

Query: 190 ILDDGSKSDVICWNALIDGY----------------------------------LKCGDI 215
           + D+    DV+ W ++I GY                                  +KC   
Sbjct: 148 VFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGF 207

Query: 216 EGA----KEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            G+    K++    +K    +N    ++++  +AR G   E+R +F+E+  K+E++W+A+
Sbjct: 208 LGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNAL 267

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I G+ + G  +EAL +F +MQR+     +F  S +L + ++ G+L+QG W+H H+ ++  
Sbjct: 268 ISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK 327

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
            +   +G  L+ MYAK G +  A KVF+ +   +V + N+M+ G A HG   +A+ELF +
Sbjct: 328 KLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEE 387

Query: 388 MQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           M    ++ P+ ITF  VL+AC+HAG++D GL     M++ YG++P++ HY  +VDL GRA
Sbjct: 388 MMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRA 446

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP---------- 496
           G L +A+  I  MP+EPNA +W ALLGA + H   E G    + +LE++P          
Sbjct: 447 GLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLS 506

Query: 497 ----QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                  +  DVAK+RK MK+ G+K  P  S +++   +H F   D SHPQ  ++Y M +
Sbjct: 507 NIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWE 566

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
            + +K+K  GY P++S V   +D++EKE   +YHSEKLA+AF  +NT PG+ IR++KN+R
Sbjct: 567 NLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIR 626

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VC DCHSA K +S V KR+IIVRD  R+HHFR+G CSC D+W
Sbjct: 627 VCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 180/391 (46%), Gaps = 50/391 (12%)

Query: 32  KTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           +TI + L  +C T    LKQ    H  ++ S    D  +  +++  +A  +  + E+A +
Sbjct: 91  RTIYNKLLKRC-TMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYA--KCGSLEIARQ 147

Query: 89  VFNSVHKPNVFVWNSVLRACLEH---NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           VF+ +   +V  W S++    +    +     + L+ EMV    +PN+F   ++ K C  
Sbjct: 148 VFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGF 207

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             +  +G Q+H    K G   +V V SS + MYA  G + ++R + D+    + + WNAL
Sbjct: 208 LGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNAL 267

Query: 206 IDGYLKCGDIEGAKELFKSTK-----------------DKNTGSY--------------- 233
           I G+ + G+ E A  LF   +                    TGS                
Sbjct: 268 ISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK 327

Query: 234 -------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  N ++  +A+ G   +A+K+F+ +   D ++ ++++ GY + G  KEA+E+F E
Sbjct: 328 KLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEE 387

Query: 287 MQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M    +I+P       VL AC+  G LD+G++  + +K+  +       T +VD++ + G
Sbjct: 388 MMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAG 447

Query: 346 RLDMAWKVFEDMKMKEVFT-WNAMIGGLAMH 375
            LD A    E+M ++   T W A++G   MH
Sbjct: 448 LLDQAKSFIEEMPIEPNATIWGALLGASKMH 478



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 7/212 (3%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            L V + +    ++P + + + +L  C  LG L QG  +H H+  +    D V+  +++ 
Sbjct: 75  GLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILF 134

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD---AIELFFKMQREKMRPD 396
           MYAKCG L++A +VF++M +K+V TW +MI G +  G A     A+ LF +M R+ +RP+
Sbjct: 135 MYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
               + ++  C   G    G Q      + YG    V     +VD+  R G L E+  V 
Sbjct: 195 EFALSSLVKCCGFLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYARCGELRESRLVF 253

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
             +  + N   W AL+    + GE E  E LG
Sbjct: 254 DELESK-NEVSWNALISGFARKGEGE--EALG 282


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 325/547 (59%), Gaps = 16/547 (2%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S + LK+ HA ++ +G  +D +++   V+ +A S   N + A  VF  ++ P+ + W ++
Sbjct: 39  STEDLKKIHAQLIITGQIKDTFIATKTVESYAVSA-RNIDYAFWVFVGINYPDSYSWTTM 97

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +R  +E   P + +  Y  M     + NKFT+  V KA  +  + +EG  VH  +VK G 
Sbjct: 98  IRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGF 157

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           C DV  +++ I MY   G +  A  + D+    +V+ WN +I G   CGD E A+ LF  
Sbjct: 158 CYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGE 217

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
             ++N GS+NA++ G+++ G  + AR LF+ M ++D ++W ++I  Y ++G   EALE+F
Sbjct: 218 MPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELF 277

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            EM    +     +++ +L+ACA +GALD G WIH ++KR+ +  D  L TALVDMYAKC
Sbjct: 278 KEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKC 337

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A+ VF  M  K + +WNAM+ GLA+HG    A+ELF +M+   + P+ ITF  VL
Sbjct: 338 GCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVL 397

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC+H G ++ G +    M + + I P+VEHYGC+VD+L R G + EA+E+I +MP+EPN
Sbjct: 398 SACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPN 457

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKL 510
             +W ALL AC+ HG    GE +   + ++  ++  C              ++V K RK+
Sbjct: 458 VVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKM 517

Query: 511 MKERGI-KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           MK+ G+ K  PG S I+++ V+H+F   D  H + +E+  +++++   L+++GY  N S 
Sbjct: 518 MKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEVKGYEANPSL 577

Query: 570 VLFDIDE 576
           VL++IDE
Sbjct: 578 VLYNIDE 584


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 327/556 (58%), Gaps = 46/556 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +V  W S++ A    N     +  +  M+     P++ T   V  AC+  +  + G  +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
             V + G+                              S++ V+   ALID Y KCGD  
Sbjct: 263 LLVEEKGM----------------------------PTSENLVV---ALIDMYAKCGDFG 291

Query: 217 GAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
            A+++F +  +     S+NA+I G+ + G  + AR LF+EM  +D IT+++++ GY   G
Sbjct: 292 HAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSG 351

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             +EAL +F  M+R  ++   F +  +L ACASLGAL QG  +H  +++  +  D  LGT
Sbjct: 352 QLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGT 411

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+DMY KCGR+D A  VF+ M  ++V TW AMI GLA +G    A+E F++M+ +  +P
Sbjct: 412 ALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQP 471

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           + +++  VL+AC+H+ +++ G      M+ +Y I P++EHYGC++DLLGR+G L EA ++
Sbjct: 472 NSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 531

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRC 501
           + +MP++PNA +W ++L ACR H  ++  +   + LL++EP               +R+ 
Sbjct: 532 VKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQW 591

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++ +K+R LM+ER +K   G S I V G +H+F   D SHP++ EI  ML++I  +LK  
Sbjct: 592 ENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSL 651

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GYSP +SQ+  D+DEEEKE A   HSEKLAIAFG IN  P   + + KNLRVCEDCHSA 
Sbjct: 652 GYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAI 711

Query: 622 KLISKVFKRDIIVRDR 637
           KLIS+++ R+IIVRDR
Sbjct: 712 KLISRLWNREIIVRDR 727



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 217/490 (44%), Gaps = 77/490 (15%)

Query: 51  QAHAVILKSGHFQDHYVSG-----TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           + HA +  SGH   H  S      +LV C       +   AL +F+ +  P+ F++++ L
Sbjct: 17  ELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPL-HLRYALHLFDRM-PPSTFLFDTAL 74

Query: 106 RACLEH-NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           RAC    ++P R   L+  M     +P+ FT+  +FK CS + +    +          L
Sbjct: 75  RACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFK-CSSSSSRPHSLL---------L 124

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           C  +H         AC       R +L   +       N+LI  Y++ G    A+  F  
Sbjct: 125 CTMLHA--------ACL------RTMLPSAAP---FVSNSLIHMYIRLGLAADARRAFDE 167

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              K+  ++  +ISG A+ G   + + L ++   +D I+W+++I  Y++    +EA+  F
Sbjct: 168 IHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCF 227

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M    I P +  +  VL+ACA L  L+ G  +H  V+   +     L  AL+DMYAKC
Sbjct: 228 KTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKC 287

Query: 345 --------------------------------GRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
                                           G +D+A  +F++M+++++ T+N+M+ G 
Sbjct: 288 GDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
              G+  +A+ LF  M+R  +R D  T   +L+ACA  G + +G +AL    +   ++ +
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG-RALHACIEQRLVEAD 406

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +     ++D+  + G + EA  V   M    +   W A++     +G       +GK  L
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMGKR-DVHTWTAMIAGLAFNG-------MGKAAL 458

Query: 493 EMEPQNRRCD 502
           E   Q  RCD
Sbjct: 459 EHFYQ-MRCD 467



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +  + ++A  +F+ +   ++  +NS++   +   +    + L+  M   D + + FT   
Sbjct: 318 KHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVN 377

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC+   A ++G  +HA + +  +  D+++ ++ + MY   G V++A  +     K D
Sbjct: 378 LLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRD 437

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  W A+I G    G  + A E F   +      N+ SY A+++  +      E R  F+
Sbjct: 438 VHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFD 497

Query: 255 EM----NDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EM    N   +I  +  +ID   + G   EA+++   M    I+P   + + +L+AC
Sbjct: 498 EMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/438 (43%), Positives = 282/438 (64%), Gaps = 17/438 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           N+++  +   G FE A ++F+E+   +++ ++W+++++G+  +G   E L +F E     
Sbjct: 159 NSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEAD 218

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + P  F +  VL ACA +GAL  G  +H    +  +  ++ +G AL+D+YAKCG ++ AW
Sbjct: 219 LMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAW 278

Query: 352 KVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           KVFE+M + + V +W ++I GLA +G   DA+ELF  M+RE++ P  IT   VL AC+H 
Sbjct: 279 KVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHC 338

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G++D G +    MQ  YGI P +EH GC+VDLLGRAG + EA   I++MP+EPNA VW  
Sbjct: 339 GLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRT 398

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI 516
           LLGAC  H ++E GE     L+E++P +               R  D   +RK M   G+
Sbjct: 399 LLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGV 458

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
           + NPG S++++   ++EF  GD SHP+  +IY  L +I E+L+ +GY P +S VL DI+E
Sbjct: 459 RKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEE 518

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           EEKETA  YHSE+LAIAF  + + PG+ IR++KNLR+C DCH   KLISKV+ R+IIVRD
Sbjct: 519 EEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRD 578

Query: 637 RVRYHHFRNGKCSCNDFW 654
           R R+HHF+ G+CSC D+W
Sbjct: 579 RSRFHHFKGGECSCKDYW 596



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 49/325 (15%)

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P+ F  N+VLR       P   ++L+   +   + P+  TYP + +AC+   A +EG  +
Sbjct: 86  PDPFSLNTVLRIAASSAHPRIALALHRRRL---APPDTHTYPPLLQACTRLLALREGESL 142

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS--KSDVICWNALIDGYLKCG 213
           HA   KNGL   V VK+S +  Y   G    A ++ D+    + +++ WN++++G+   G
Sbjct: 143 HAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANG 202

Query: 214 DIEGAKELFKSTKDK---------------------------------------NTGSYN 234
                  +F+ T +                                        N+   N
Sbjct: 203 RPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGN 262

Query: 235 AMISGFARFGRFEEARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           A+I  +A+ G  E+A K+F EM   +  ++W+++I G   +G+ K+ALE+F  M+R+++ 
Sbjct: 263 ALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLI 322

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAW 351
           P    +  VL AC+  G +D G    + ++        +  LG  +VD+  + GR++ A 
Sbjct: 323 PTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLG-CMVDLLGRAGRVEEAH 381

Query: 352 KVFEDMKMK-EVFTWNAMIGGLAMH 375
                M ++     W  ++G  AMH
Sbjct: 382 NYITTMPVEPNAVVWRTLLGACAMH 406



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN--SVHKPNVFVWNSVLRACLE 110
           HA   K+G     +V  +LV  H       FE A +VF+   V + N+  WNSV+     
Sbjct: 143 HAEAAKNGLVALVFVKNSLV--HHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAA 200

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +  P  V++++ E +  D  P+ FT  +V  AC+   A   G +VH    K GL G+ HV
Sbjct: 201 NGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHV 260

Query: 171 KSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
            ++ I +YA  G V  A ++ ++ G    V+ W +LI G    G  + A ELF   + + 
Sbjct: 261 GNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERER 320

Query: 230 TGSYNAMISGF----ARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
               +  + G     +  G  ++  + FNEM DK  I         ++D   + G  +EA
Sbjct: 321 LIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEA 380

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
                 M    ++P   V   +L ACA    L+ G
Sbjct: 381 HNYITTM---PVEPNAVVWRTLLGACAMHKKLELG 412


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 316/540 (58%), Gaps = 20/540 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+  +Y T+  +C     D +G +    +  +    DV   ++ +   +  G V +A+ +
Sbjct: 127 PDAVSYNTLL-SCHFASGDADGAR---RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAV 182

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS-YNAMISGFARFGRFEEA 249
                  + + WNA++ G+    D+  A+E F++  +K     + AM+SG+   G   +A
Sbjct: 183 FLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKA 242

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
            + F  M  ++ ++W+A++ GY K+ +  +AL +F  M R+  ++P    LS VL  C++
Sbjct: 243 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 302

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L AL  G  IH    +  +  +  +GT+LV MY KCG L  A K+F +M  ++V  WNAM
Sbjct: 303 LSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 362

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G A HG   +AI LF +M+ E + P+ ITF  VL+AC H G+ D G++    MQ++YG
Sbjct: 363 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 422

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P V+HY C+VDLL RAG L  A ++I SMP EP+ + +  LL ACR +  +EF E   
Sbjct: 423 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 482

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L+E +PQ+               + DDV+++R+ MK+  +   PG S I++ GV+HEF
Sbjct: 483 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 542

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
           R+ D  HPQ+  I+  L ++ E++K  GY P+   VL D+DE  K      HSEKLAI+F
Sbjct: 543 RSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISF 602

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG T+R+ KNLRVC DCH+A K+ISK+  R+II+RD  R+HHFR G CSC D+W
Sbjct: 603 GLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 44/302 (14%)

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFAR-FGRFEE----------------------- 248
           GD+ GA+E F ST  K T +YN +++G+AR  GR  +                       
Sbjct: 80  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCH 139

Query: 249 --------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVL 299
                   AR+LF  M  +D ++W+ ++ G +K G  +EA  VF  M  R+ +     V 
Sbjct: 140 FASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVS 199

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
               A    + A ++  W  +  ++     DAVL TA+V  Y   G +  A + FE M +
Sbjct: 200 G--FACSRDMSAAEE--WFRNAPEKG----DAVLWTAMVSGYMDIGNVVKAIEYFEAMPV 251

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           + + +WNA++ G   +  ADDA+ LF  M RE  ++P+  T + VL  C++   +  G Q
Sbjct: 252 RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ 311

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
              +  ++  +   +     +V +  + G L+ A ++   M    +   W A++    +H
Sbjct: 312 IHQWCMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQH 369

Query: 479 GE 480
           G+
Sbjct: 370 GD 371



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 17/237 (7%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVF 140
           N   A++ F ++   N+  WN+V+   ++++     + L+  MV   + +PN  T  +V 
Sbjct: 238 NVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 297

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             CS   A   G Q+H   +K  L  ++ V +S + MY   G ++ A ++  +    DV+
Sbjct: 298 LGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVV 357

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMI-----SGFARFGR--FEEA 249
            WNA+I GY + GD + A  LF+  KD+    N  ++ A++     +G   FG   FE  
Sbjct: 358 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 417

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++L+      D   +S ++D   + G  + A+++   M     +P       +LAAC
Sbjct: 418 QELYGIEPRVDH--YSCMVDLLCRAGKLERAVDLIRSM---PFEPHPSAYGTLLAAC 469


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/658 (34%), Positives = 349/658 (53%), Gaps = 59/658 (8%)

Query: 56  ILKSGHFQDHYVSGT-LVKCHANS-RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE 113
           +LK+G+F  H   G  L+         ++ E A KVF+ + + NV  W  ++    ++  
Sbjct: 182 VLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGY 241

Query: 114 PWRVISLYSEM-VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
               I L+ EM V     P++FT   +   C+  +    G ++H+ V+++GL  D+ V  
Sbjct: 242 NDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGC 301

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--------------------- 211
           S + MYA  G V +AR++ D   + +V+ W AL++GY++                     
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGG 361

Query: 212 ----CGDIEGAKELFKSTKDKNTGSY-----------------NAMISGFARFGRFEEAR 250
               C    G  +   S  D + G                   N ++S +A+ GR E AR
Sbjct: 362 VAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESAR 421

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K F+ + +K+ ++ + + D   KD       ++  E++        F  + +L+  A +G
Sbjct: 422 KCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIG 481

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            + +G  IH  V +     D  +  AL+ MY+KCG  + A +VF DM+   V TW ++I 
Sbjct: 482 TIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIIN 541

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A HG A  A+ELF+ M    ++P+ +T+  VLSAC+H G+ID   +  T M+  +GI 
Sbjct: 542 GFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIV 601

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P +EHY C+VDLLGR+G L+EA E I+SMP + +A VW   LG+CR H   + GE   K+
Sbjct: 602 PRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKM 661

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           +LE EP +               R +DVA +RK MK++ I    GSS I+V   +H+F  
Sbjct: 662 ILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHV 721

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD  HP+ ++IY  L ++  K+K  GY PN+  VL D+++E+KE     HSEKLA+AF  
Sbjct: 722 GDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFAL 781

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I+T     IRV KNLRVC DCH+A K IS V  R+I+VRD  R+HH ++G CSCND+W
Sbjct: 782 ISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 21/272 (7%)

Query: 167 DVHVKSSGIQMYA----CFGCVNKARQIL-DDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           DV   SS I  +A    C   V    Q+L  DG   +  C+ A+I   LK G  +    L
Sbjct: 119 DVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCL 178

Query: 222 FKSTKDKNTGSYNA-------MISGFAR---FGRFEEARKLFNEMNDKDEITWSAIIDGY 271
           F       TG +++       +I  F +       E ARK+F++M +K+ +TW+ +I   
Sbjct: 179 FGFVL--KTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRL 236

Query: 272 TKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            + GY  EA+++F EM       P +F L+ +++ CA +  L  G  +H  V R+ + +D
Sbjct: 237 AQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLD 296

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA--DDAIELFFKM 388
             +G +LVDMYAKCG +  A KVF+ M+   V +W A++ G    G     +A+ +F  M
Sbjct: 297 LCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNM 356

Query: 389 QRE-KMRPDRITFACVLSACAHAGMIDRGLQA 419
             +  + P+  TF+ VL ACA     D G Q 
Sbjct: 357 LLQGGVAPNCFTFSGVLKACASLPDFDFGEQV 388



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 178/413 (43%), Gaps = 61/413 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H+ +++SG   D  V  +LV  +A       + A KVF+ + + NV  W +++   +
Sbjct: 282 KELHSWVIRSGLVLDLCVGCSLVDMYAKCGL--VQEARKVFDGMREHNVMSWTALVNGYV 339

Query: 110 EHNEPWR--VISLYSEMV---GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
                +    + ++S M+   GV   PN FT+  V KAC+       G QVH   +K GL
Sbjct: 340 RGGGGYEREAMRMFSNMLLQGGV--APNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGL 397

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQ--------------ILDD----------------- 193
                V +  + +YA  G +  AR+              ++DD                 
Sbjct: 398 SAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDRE 457

Query: 194 ----GSKSDVICWNALIDGYLKCGDIEGAKEL--------FKSTKDKNTGSYNAMISGFA 241
               GS      + +L+ G    G I   +++        F++    N    NA+IS ++
Sbjct: 458 VEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVN----NALISMYS 513

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G  E A ++FN+M D + ITW++II+G+ K G+  +ALE+F  M    +KP       
Sbjct: 514 KCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIA 573

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKM 359
           VL+AC+ +G +D+  W H    R++  +   +     +VD+  + G L  A +    M  
Sbjct: 574 VLSACSHVGLIDEA-WKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPF 632

Query: 360 -KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
             +   W   +G   +H R     E   KM  E+   D  T+  + +  A  G
Sbjct: 633 DADALVWRTFLGSCRVH-RNTKLGEHAAKMILEREPHDPATYILLSNLYATEG 684



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 52/302 (17%)

Query: 234 NAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RD 290
           N++I+ +++      A  +F  M +  +D +++S+II  +  +    +A+E+F+++  +D
Sbjct: 91  NSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQD 150

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-----ICVDAVLGTALVDMYAK-C 344
            + P ++  + V+ AC   G    G+ +   V +       +CV    G  L+DM+ K C
Sbjct: 151 GVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCV----GCELIDMFVKGC 206

Query: 345 GRLDM--AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFA 401
              D+  A KVF+ M+ K V TW  MI  LA +G  D+AI+LF +M       PDR T  
Sbjct: 207 SLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLT 266

Query: 402 CVLSACA-----------HAGMIDRGLQ-------ALTYMQQMYGIDPEV--------EH 435
            ++S CA           H+ +I  GL        +L  M    G+  E         EH
Sbjct: 267 GLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREH 326

Query: 436 ----YGCIVD--LLGRAGYLAEAEEVISSMPME----PNAAVWEALLGACRKHGEVEFGE 485
               +  +V+  + G  GY  EA  + S+M ++    PN   +  +L AC    + +FGE
Sbjct: 327 NVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGE 386

Query: 486 RL 487
           ++
Sbjct: 387 QV 388



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 19/324 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H   +K G      V   LV  +A S     E A K F+ + + N+     V    +
Sbjct: 386 EQVHGQTIKLGLSAIDCVGNGLVSVYAKS--GRMESARKCFDVLFEKNLVSETVVDDTNV 443

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +         L  E+  V S  + FTY ++    +      +G Q+HA VVK G   D+ 
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLS 503

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ I MY+  G    A Q+ +D    +VI W ++I+G+ K G    A ELF +  +  
Sbjct: 504 VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETG 563

Query: 229 ---NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  +Y A++S  +  G  +EA K F  M D   I      ++ ++D   + G   EA
Sbjct: 564 VKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEA 623

Query: 281 LEVFNEM--QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           +E  N M    D +  R F+ SC +     LG     + +           D      L 
Sbjct: 624 IEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPH------DPATYILLS 677

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEV 362
           ++YA  GR +    + ++MK K++
Sbjct: 678 NLYATEGRWEDVAAIRKNMKQKQI 701



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 13/224 (5%)

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVL-AACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +A+   N    +     K + S +L   C        G  +H  +  +++ +D +L  +L
Sbjct: 34  KAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSL 93

Query: 338 VDMYAKCGRLDMAWKVFEDMK--MKEVFTWNAMIGGLAMHGRADDAIELFFK-MQREKMR 394
           + +Y+K      A+ +F+ M+   ++V +++++I   A +     A+E+F + + ++ + 
Sbjct: 94  ITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVY 153

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRAGYLAE-- 451
           P+   F  V+ AC   G    GL    ++ +    D  V   GC ++D+  +   LA+  
Sbjct: 154 PNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHV-CVGCELIDMFVKGCSLADLE 212

Query: 452 -AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            A +V   M  E N   W  ++    ++G   + +    + LEM
Sbjct: 213 SARKVFDKMR-EKNVVTWTLMITRLAQYG---YNDEAIDLFLEM 252


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/638 (35%), Positives = 338/638 (52%), Gaps = 83/638 (13%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
            ++L  KC +S+  +KQ  A ++ +G F        L++  A S F +   AL +F  + 
Sbjct: 4   FNLLLQKC-SSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIP 62

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEG 152
            P+   WN+V+R     ++P   +  Y  M   +   + +  T     KAC+   A  E 
Sbjct: 63  YPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEA 122

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +Q+H+                               Q+L  G  +DV+    L+D Y K 
Sbjct: 123 IQLHS-------------------------------QLLRFGFNADVLLQTTLLDAYAKI 151

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           GD++                                A+KLF+EM   D  +W+A+I G+ 
Sbjct: 152 GDLD-------------------------------LAQKLFDEMPQPDIASWNALIAGFA 180

Query: 273 KDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           +     +A+  F  M+ D  ++P    +   L AC+ LGAL +G  +H ++    +  + 
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNV 240

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +   ++DMYAKCG +D A+ VFE+M+  K + TWN MI   AMHG    A++LF K+ R
Sbjct: 241 QVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGR 300

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             M PD +++  VL AC HAG+++ GL+    M Q  G++P ++HYG +VDLLGRAG L 
Sbjct: 301 SGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLK 359

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM--------------EP 496
           EA +++SS+P  PN  +W+ LLGACR +G+VE  E   + L+EM                
Sbjct: 360 EAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYA 418

Query: 497 QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
             +R DDV ++R  M+ R +K  PG S I++ G +++F  GD SH   +EIY  L +I  
Sbjct: 419 ARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINL 478

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GYS ++S VL DI +E+KE A  YHSEKLA+AFG   T+ G  I+VIKNLR+C D
Sbjct: 479 RIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGD 538

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KLISK++ R+IIVRDR R+H F+ G CSC D+W
Sbjct: 539 CHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/678 (33%), Positives = 357/678 (52%), Gaps = 58/678 (8%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T L++LN+     + +  K  H+ + +S H  D +V+  LV  +  ++  +   A KVF+
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTY--TKCGSLTDARKVFD 69

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +   +V  WNS++ A            ++  M     + ++ T+ ++  AC   E  + 
Sbjct: 70  GMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQH 129

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G  V   + +     D+ V ++ I MYA       A Q+     + ++I W+A+I  +  
Sbjct: 130 GKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFAD 189

Query: 212 CGDIEGAKELFKSTK---------------------------------------DKNTGS 232
            G    A   F+  +                                       D  T  
Sbjct: 190 HGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTM 249

Query: 233 YNAMISGFAR--FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            NA+++ + R   G  + A  +  EM+++    W+ +I+GYT  G  +EALE +  +Q +
Sbjct: 250 SNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLE 309

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            I   K     VL AC S  +L +G  IH +     +  D ++  AL +MY+KCG ++ A
Sbjct: 310 AIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENA 369

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            ++F+ M ++   +WN M+   A HG +++ ++L  KM++E ++ + ITF  VLS+C+HA
Sbjct: 370 RRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHA 429

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G+I  G Q    +    GI+ + EHYGC+VDLLGRAG L EAE+ IS MP EP    W +
Sbjct: 430 GLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWAS 489

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQN------------RRCD--DVAKMRKLMKERGI 516
           LLGACR H +++ G+   + LLE++P N             R D  + AK+R+ M  R +
Sbjct: 490 LLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRV 549

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
           K  PG S I V   +HEFR  D SHP+  EIY  ++++   ++  GY P++  VL D+DE
Sbjct: 550 KKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDE 609

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           E+KE+   YHSEKLAIAFG I+T   +++ + KNLRVCEDCH+ATK ISK+  R+I+VRD
Sbjct: 610 EQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRD 669

Query: 637 RVRYHHFRNGKCSCNDFW 654
             R+HHFR+G CSC D+W
Sbjct: 670 NHRFHHFRDGSCSCKDYW 687



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 29/268 (10%)

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M  + +K        VL +     AL +G +IH  V+ +   +D  + TALV+ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           L  A KVF+ M  + V TWN+MI   ++  R+ +A  +F +MQ E  R DR+TF  +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 407 CAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           C +   +  G      + +  + +D  V     ++ +  R      A +V   M  + N 
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVG--TALITMYARCRSPENAAQVFGRMK-QKNL 177

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMI 525
             W A++ A   HG                     C +  +  ++M++ GI  N  + + 
Sbjct: 178 ITWSAIITAFADHGH--------------------CGEALRYFRMMQQEGILPNRVTFIS 217

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
            +NG    F T  G   ++  I+L++ +
Sbjct: 218 LLNG----FTTPSGLE-ELSRIHLLITE 240


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/623 (35%), Positives = 341/623 (54%), Gaps = 55/623 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACS 144
           A +VF+ +   +   WN+++     +      + +   M   +  +P+  T  +V  AC+
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A     + HA  +++GL   V+V ++ +  Y   G +  AR + D     + + WNA
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 205 LIDGYLKCGDIEGAKELF---------------------------------------KST 225
           +IDGY + GD   A  LF                                       +  
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D N    NA+I+ +++  R + A  +F+E++ + +++W+A+I G  ++G  ++A+ +F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            MQ + +KP  F L  V+ A A +    Q  WIH +  R  +  D  + TAL+DMYAKCG
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           R+++A  +F   + + V TWNAMI G   HG    A+ELF +M+   + P+  TF  VLS
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG++D G +  T M++ YG++P +EHYG +VDLLGRAG L EA   I  MPM+P  
Sbjct: 473 ACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
           +V+ A+LGAC+ H  VE  E   + + E+ PQ                   DVA++R  M
Sbjct: 533 SVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAM 592

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           ++ G++  PG S+I +   IH F +G  +H Q KEIY  L K+IE++K  GY P++  + 
Sbjct: 593 EKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI- 651

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++++ K      HSEKLAIAFG I T PG TI++ KNLRVC DCH+ATKLIS V  R+
Sbjct: 652 HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGRE 711

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           II+RD  R+HHF++GKCSC D+W
Sbjct: 712 IIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 193/421 (45%), Gaps = 51/421 (12%)

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           ++ +  M    + P   T+ ++ K C+       G  VHA +   G+  +    ++   M
Sbjct: 44  LAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANM 103

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL---------------- 221
           YA       AR++ D     D + WNAL+ GY + G    A E+                
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 222 ------------------------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
                                    +S  ++      A++  + + G    AR +F+ M 
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
            K+ ++W+A+IDGY ++G  +EAL +FN M  + +      +   L AC  LG LD+G+ 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H+ + R  +  +  +  AL+ MY+KC R+D+A  VF+++  +   +WNAMI G A +G 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL---TYMQQMYGIDPEVE 434
           ++DA+ LF +MQ E ++PD  T   V+ A A    I   LQA     Y  +++ +D +V 
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPALAD---ISDPLQARWIHGYSIRLH-LDQDVY 399

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               ++D+  + G +  A  + +S   E +   W A++     HG   FG+   ++  EM
Sbjct: 400 VLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHG---FGKAAVELFEEM 455

Query: 495 E 495
           +
Sbjct: 456 K 456



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 45/367 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           +AHA  ++SG   +  V+       A  +  +   A  VF+ +   N   WN+++    +
Sbjct: 182 EAHAFAIRSG--LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +    ++L++ MV         +     +AC       EG++VH  +V+ GL  +V V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK---- 226
            ++ I MY+    V+ A  + D+  +   + WNA+I G  + G  E A  LF   +    
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 227 -----------------------------------DKNTGSYNAMISGFARFGRFEEARK 251
                                              D++     A+I  +A+ GR   AR 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LFN   ++  ITW+A+I GY   G+ K A+E+F EM+   I P +     VL+AC+  G 
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 312 LDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAM 368
           +D+G      +K +      +   GT +VD+  + G+LD AW   + M M    + + AM
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGT-MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 369 IGGLAMH 375
           +G   +H
Sbjct: 539 LGACKLH 545



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 3/202 (1%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL  F  M      P     + +L  CA+ G L  G  +H  +    I  +A+  TAL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRI 398
           MYAKC R   A +VF+ M +++   WNA++ G A +G A  A+E+  +MQ E+  RPD I
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL ACA+A  +    +A  +  +  G++  V     I+D   + G +  A  V   
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIR-SGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 459 MPMEPNAAVWEALLGACRKHGE 480
           MP + N+  W A++    ++G+
Sbjct: 222 MPTK-NSVSWNAMIDGYAQNGD 242


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/596 (36%), Positives = 325/596 (54%), Gaps = 49/596 (8%)

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFT 135
           N+     +LA  +F S+   ++  WN+++    ++    + + L+S M+   S  P++FT
Sbjct: 134 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 193

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V  AC+     + G QVHA++++  +  +  V                         
Sbjct: 194 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT------------------------ 229

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                  NALI  Y K G +E A+ +   +   D N  S+ A++ G+ + G  E AR++F
Sbjct: 230 -------NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 282

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             MN++D + W+A+I GY ++G   EA+++F  M     +P  + L+ VL+ CASL  LD
Sbjct: 283 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 342

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGL 372
            G  IH    R+ +   + +  A++ MYA+ G    A ++F+ +   KE  TW +MI  L
Sbjct: 343 YGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 402

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A HG+ ++A+ LF +M R  + PDRIT+  VLSAC+HAG ++ G +    ++  + I PE
Sbjct: 403 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 462

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           + HY C+VDLL RAG  +EA+E I  MP+EP+A  W +LL ACR H   E  E   + LL
Sbjct: 463 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 522

Query: 493 EMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
            ++P N               R  D A++ K  KE+ ++   G S   +   IH F   D
Sbjct: 523 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADD 582

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
             HPQ   +Y M  ++ E++K  G+ P+   VL D+D+E KE     HSEKLAIAFG I+
Sbjct: 583 VVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS 642

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T    T+RV+KNLRVC DCH+A K ISKV  R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 643 TPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 171/362 (47%), Gaps = 18/362 (4%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P +FT   V  +C++T+A   G +VH+ VVK GL   V V +S + MY   G    A  +
Sbjct: 56  PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 115

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            +      V  WNA++      G ++ A+ LF+S  D++  S+NAMI+G+ + G   +A 
Sbjct: 116 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKAL 175

Query: 251 KLFNEMNDK-----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           KLF+ M  +     DE T ++++      G  +   +V   + R ++     V + +++ 
Sbjct: 176 KLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 235

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
            A  G+++    I D      + V  +  TAL++ Y K G ++ A ++F  M  ++V  W
Sbjct: 236 YAKSGSVENARRIMDQSMETDLNV--ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAW 293

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ-----AL 420
            AMI G   +GR D+AI+LF  M      P+  T A VLS CA    +D G Q       
Sbjct: 294 TAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIR 353

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           + ++Q   +         I+ +  R+G    A  +   +        W +++ A  +HG+
Sbjct: 354 SLLEQSSSVS------NAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQ 407

Query: 481 VE 482
            E
Sbjct: 408 GE 409



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 36/286 (12%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           FA+ GR  +AR +F EM ++D ++W+ ++ G  + G + EA++   +M  D   P +F L
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC--------------- 344
           + VL++CA   A   G  +H  V +  +     +  ++++MY KC               
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 345 ----------------GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
                           GR+D+A  +FE M  + + +WNAMI G   +G    A++LF +M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 389 QRE-KMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRA 446
             E  M PD  T   VLSACA+ G +  G Q   Y ++     + +V +   ++    ++
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKS 239

Query: 447 GYLAEAEEVI-SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           G +  A  ++  SM  + N   + ALL    K G++E    +  ++
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVM 285



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           M+AK GRL  A  VF +M  ++  +W  M+ GL   GR  +AI+    M  +   P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 400 FACVLSACA--HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
              VLS+CA   AG + R + +        G+   V     ++++ G+ G    A  V  
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVV---KLGLGSCVPVANSVLNMYGKCGDSETATTVFE 117

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            MP+  + + W A++      G ++  E L
Sbjct: 118 RMPVR-SVSSWNAMVSLNTHLGRMDLAESL 146


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/638 (35%), Positives = 338/638 (52%), Gaps = 83/638 (13%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
            ++L  KC +S+  +KQ  A ++ +G F        L++  A S F +   AL +F  + 
Sbjct: 4   FNLLLQKC-SSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIP 62

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEG 152
            P+   WN+V+R     ++P   +  Y  M   +   + +  T     KAC+   A  E 
Sbjct: 63  YPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEA 122

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +Q+H+                               Q+L  G  +DV+    L+D Y K 
Sbjct: 123 IQLHS-------------------------------QLLRFGFNADVLLQTTLLDAYAKI 151

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           GD++                                A+KLF+EM   D  +W+A+I G+ 
Sbjct: 152 GDLD-------------------------------LAQKLFDEMPQPDIASWNALIAGFA 180

Query: 273 KDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           +     +A+  F  M+ D  ++P    +   L AC+ LGAL +G  +H ++    +  + 
Sbjct: 181 QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNV 240

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +   ++DMYAKCG +D A+ VFE+M+  K + TWN MI   AMHG    A++LF K+ R
Sbjct: 241 QVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGR 300

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
             M PD +++  VL AC HAG+++ GL+    M Q  G++P ++HYG +VDLLGRAG L 
Sbjct: 301 SGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLK 359

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM--------------EP 496
           EA +++SS+P  PN  +W+ LLGACR +G+VE  E   + L+EM                
Sbjct: 360 EAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYA 418

Query: 497 QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
             +R DDV ++R  M+ R +K  PG S I++ G +++F  GD SH   +EIY  L +I  
Sbjct: 419 ARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINL 478

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GYS ++S VL DI +E+KE A  YHSEKLA+AFG   T+ G  I+VIKNLR+C D
Sbjct: 479 RIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGD 538

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KLISK++ R+IIVRDR R+H F+ G CSC D+W
Sbjct: 539 CHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/622 (35%), Positives = 343/622 (55%), Gaps = 49/622 (7%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +++ HA +LK G          LV  +A S       A + F+   + ++ +++++L A 
Sbjct: 20  VRRVHARLLKEGLADLPSAPALLVSAYARSCL--LPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 109 LEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              ++P  V+ L   M+  D+ +P+ F   ++  A     + + G Q+HAH   +    D
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             VKSS                               LID Y KCG  + A+++F S   
Sbjct: 138 NVVKSS-------------------------------LIDMYCKCGVPQDARKVFDSIGV 166

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           KN+  + A+ISG+A  G   EA  LF  M      TW+A+I G+ K G Y  A+ +F EM
Sbjct: 167 KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEM 226

Query: 288 QRDKIKPR-KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +RD I+    FVL+ V+   A L AL  G  +H  V R       ++G ALVDMY+KC  
Sbjct: 227 RRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSD 286

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +  A +VFE + +++V +W  ++ G A HGRA++   L+ +M    M+P+ +TF  ++ A
Sbjct: 287 IHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYA 346

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG++ +G Q    M++ YG+ P V+HY C +DLL R+GYL+EAE++I++MP EP+ A
Sbjct: 347 CSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEA 406

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMK 512
            W ALL AC+KH + +   R+   LLE+ P+              N + D VAK+RK+M 
Sbjct: 407 TWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMA 466

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           E  I+  PG S ++       F  G+      +EI   L++++ +++  GY P++S V+ 
Sbjct: 467 EMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPDTSSVMH 526

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++E EKE     HSE+LA+AFG + + PG+ IRV+KNLRVC DCH+  K IS + +R I
Sbjct: 527 DLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISAIAQRKI 586

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           IVRD  R+HHF +G CSC++FW
Sbjct: 587 IVRDASRFHHFEDGNCSCSEFW 608


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/457 (42%), Positives = 286/457 (62%), Gaps = 14/457 (3%)

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
           C   E   ++ K+  D  T   N +I  +A  G  + A  +F+EM + D  +WS ++ GY
Sbjct: 84  CEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGY 143

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           +++G   E L++  EMQ + +    F L+ V+  C  LG LD G W+H ++ +  + +D 
Sbjct: 144 SQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDV 203

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           VLGTALV MY+KCG LD A KVF+ M  ++V TW+ MI G A+HG  + A++LF  M+R 
Sbjct: 204 VLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRS 263

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           K+ P+ +TF  VLSA +H+G++++G Q    M   Y I P+++HYGC+VDL  RAG +  
Sbjct: 264 KIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGH 323

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A + I +MP+EPN  +W  LLGAC+ HG    GE + + +L+++P +             
Sbjct: 324 AHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYAS 383

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             R   V ++R LMKE+  K   G S I++N ++H+F  G+ SHP+ ++IY ML ++  K
Sbjct: 384 LGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARK 443

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           LK  G+  ++  VL DIDEEEKE A   HSE+LAIA+G ++T  G+ IR++KNLR C DC
Sbjct: 444 LKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDC 503

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H   KLIS+V+ R+II+RDRV +HHFR   CSCND+W
Sbjct: 504 HEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 41/329 (12%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+  H PN+F+WN+++R     + P   I+LY +M      PN +T+  V  AC     
Sbjct: 23  IFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLR 82

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
             EG ++H+ +VK GL  +  + +  I++YA  GC++ A  + D+  + D   W+ ++ G
Sbjct: 83  LCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSG 142

Query: 209 YLKCGDIEGAKELFKSTKDKNTGS------------------------------------ 232
           Y + G      +L +  + +N  S                                    
Sbjct: 143 YSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKID 202

Query: 233 ---YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                A++  +++ G  + A K+F  M ++D  TWS +I GY   G+ ++AL++F+ M+R
Sbjct: 203 VVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKR 262

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLD 348
            KI P     + VL+A +  G +++G  I + +     I         +VD++ + G + 
Sbjct: 263 SKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVG 322

Query: 349 MAWKVFEDMKMK-EVFTWNAMIGGLAMHG 376
            A K  + M ++  V  W  ++G    HG
Sbjct: 323 HAHKFIQTMPIEPNVVLWRTLLGACKTHG 351



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 2/239 (0%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G    A  +F+  +  +   W+ II GY+       A+ ++ +M    I P  +    VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC  L  L +G  +H  + +  +  +  L   L+ +YA CG +D A  +F++M   +  
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W+ M+ G + +G+A + ++L  +MQ E +  D  T A V+  C   G++D G    +Y+
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            +  G+  +V     +V +  + G L  A +V   M  E +   W  ++     HG  E
Sbjct: 195 DKE-GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHGHDE 251



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 150/324 (46%), Gaps = 23/324 (7%)

Query: 50  KQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++ H+ I+K+G  F+   ++G L+K +A     ++  A  +F+ + +P+   W++++   
Sbjct: 87  QELHSQIVKAGLDFETPLLNG-LIKLYAACGCMDY--ACVMFDEMPEPDSASWSTMVSGY 143

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            ++ +    + L  EM   +   + FT  +V   C        G  VH+++ K G+  DV
Sbjct: 144 SQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDV 203

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + ++ + MY+  G ++ A ++    ++ DV  W+ +I GY   G  E A +LF + K  
Sbjct: 204 VLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRS 263

Query: 229 ----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
               N  ++ +++S ++  G  E+  ++F  M  + +IT     +  ++D + + G    
Sbjct: 264 KIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGH 323

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV- 338
           A +    M    I+P   +   +L AC + G    G    +H+ R  + +D       V 
Sbjct: 324 AHKFIQTM---PIEPNVVLWRTLLGACKTHGYKGLG----EHISRKILKLDPSSPENYVF 376

Query: 339 --DMYAKCGRLDMAWKVFEDMKMK 360
             ++YA  GR     +V   MK K
Sbjct: 377 VSNVYASLGRWSSVCQVRSLMKEK 400


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/658 (34%), Positives = 350/658 (53%), Gaps = 94/658 (14%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
            L    ++  N  T+       L  L  KC T+ + LKQ  A  +K+ +  +  V    +
Sbjct: 7   QLTSFSLTKPNTETTSLLPLPHLISLIPKC-TTLKELKQIQAYTIKTNYQNNTNVITKFI 65

Query: 73  K-CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
             C +N   ++ E A ++F+ + +PN+ ++N++ R     N+P R+I+ +   + + SK 
Sbjct: 66  NFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSK- 124

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
                          +A  EG Q+H   VK G+  +++V  +                  
Sbjct: 125 --------------VKALAEGKQLHCFAVKLGVSDNMYVVPT------------------ 152

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
                        LI+ Y  CGDI+ +                               R+
Sbjct: 153 -------------LINMYTACGDIDAS-------------------------------RR 168

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F+++++   + ++AII    ++    EAL +F E+Q   +KP    +  VL++CA LG+
Sbjct: 169 VFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGS 228

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           LD G W+H++VK+        + T L+DMYAKCG LD A  VF DM  ++   W+A+I  
Sbjct: 229 LDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVA 288

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A HG    AI +  +M++EK++PD ITF  +L AC+H G+++ G +    M   YGI P
Sbjct: 289 YATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVP 348

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            ++HYGC+VDLLGRAG L EA + I  +P++P   +W  LL AC  HG VE G+R+ + +
Sbjct: 349 SIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI 408

Query: 492 LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            E++  +               + DDV  +RK M ++G    PG S I+VN V+HEF  G
Sbjct: 409 FELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAG 468

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF-DIDEEEKETAPKYHSEKLAIAFGF 596
           +G H     ++  L +++++LK  GY P++S V + D+++EEKE   +YHSEKLAI FG 
Sbjct: 469 EGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGL 528

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT PG TIRV+KNLRVC DCH+A K IS +F R II+RD  R+HHF++GKCSC D+W
Sbjct: 529 LNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 316/540 (58%), Gaps = 20/540 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+  +Y T+  +C     D +G +    +  +    DV   ++ +   +  G V +A+ +
Sbjct: 78  PDAVSYNTLL-SCHFASGDADGAR---RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAV 133

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS-YNAMISGFARFGRFEEA 249
                  + + WNA++ G+    D+  A+E F++  +K     + AM+SG+   G   +A
Sbjct: 134 FLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKA 193

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
            + F  M  ++ ++W+A++ GY K+ +  +AL +F  M R+  ++P    LS VL  C++
Sbjct: 194 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L AL  G  IH    +  +  +  +GT+LV MY KCG L  A K+F +M  ++V  WNAM
Sbjct: 254 LSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 313

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G A HG   +AI LF +M+ E + P+ ITF  VL+AC H G+ D G++    MQ++YG
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 373

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P V+HY C+VDLL RAG L  A ++I SMP EP+ + +  LL ACR +  +EF E   
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 433

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L+E +PQ+               + DDV+++R+ MK+  +   PG S I++ GV+HEF
Sbjct: 434 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 493

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
           R+ D  HPQ+  I+  L ++ E++K  GY P+   VL D+DE  K      HSEKLAI+F
Sbjct: 494 RSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISF 553

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG T+R+ KNLRVC DCH+A K+ISK+  R+II+RD  R+HHFR G CSC D+W
Sbjct: 554 GLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 44/302 (14%)

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFAR-FGRFEE----------------------- 248
           GD+ GA+E F ST  K T +YN +++G+AR  GR  +                       
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCH 90

Query: 249 --------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVL 299
                   AR+LF  M  +D ++W+ ++ G +K G  +EA  VF  M  R+ +     V 
Sbjct: 91  FASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVS 150

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
               A    + A ++  W  +  ++     DAVL TA+V  Y   G +  A + FE M +
Sbjct: 151 G--FACSRDMSAAEE--WFRNAPEKG----DAVLWTAMVSGYMDIGNVVKAIEYFEAMPV 202

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           + + +WNA++ G   +  ADDA+ LF  M RE  ++P+  T + VL  C++   +  G Q
Sbjct: 203 RNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQ 262

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
              +  ++  +   +     +V +  + G L+ A ++   M    +   W A++    +H
Sbjct: 263 IHQWCMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQH 320

Query: 479 GE 480
           G+
Sbjct: 321 GD 322



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 17/237 (7%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVF 140
           N   A++ F ++   N+  WN+V+   ++++     + L+  MV   + +PN  T  +V 
Sbjct: 189 NVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             CS   A   G Q+H   +K  L  ++ V +S + MY   G ++ A ++  +    DV+
Sbjct: 249 LGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVV 308

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMI-----SGFARFGR--FEEA 249
            WNA+I GY + GD + A  LF+  KD+    N  ++ A++     +G   FG   FE  
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 368

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++L+      D   +S ++D   + G  + A+++   M     +P       +LAAC
Sbjct: 369 QELYGIEPRVDH--YSCMVDLLCRAGKLERAVDLIRSM---PFEPHPSAYGTLLAAC 420


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 323/571 (56%), Gaps = 57/571 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI--QMYACFGCVNKAR 188
           P+   Y  + K C+     ++G  VHAH+V +    D H+    I   MYA  GC++ AR
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFL-DNHLVLQNIIVNMYAKCGCLDDAR 143

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY- 233
           ++ D+    D++ W ALI G+ +      A  LF               S+  K +GS  
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEH 203

Query: 234 ------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                                   +A++  +AR G  + A+  F+ M  K E++W+A+I 
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G+ + G  + AL +  +MQR   +P  F  S VL+ACAS+GAL+QG W+H H+ ++ + +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            A +G  L+DMYAK G +D A +VF+ +   +V +WN M+ G A HG   + ++ F +M 
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           R  + P+ I+F CVL+AC+H+G++D GL     M++ Y ++P+V HY   VDLLGR G L
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLL 442

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------- 499
             AE  I  MP+EP AAVW ALLGACR H  +E G    +   E++P +           
Sbjct: 443 DRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R  DVAK+RK+MKE G+K  P  S +++   +H F   D +HP++KEI    ++I 
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEIS 562

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            K+K  GY P++S VL  +D++E+E   +YHSEKLA+AF  +NT  G+ IR+ KN+RVC 
Sbjct: 563 GKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCG 622

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNG 646
           DCH+A K +SKV  R+IIVRD  R+H FR+G
Sbjct: 623 DCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 167/363 (46%), Gaps = 41/363 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA ++ S HF D+++    +  +  ++    + A ++F+ +   ++  W +++    ++N
Sbjct: 110 HAHLVDS-HFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   + L+ +M+ +  +PN FT  ++ KA         G Q+HA  +K G    V+V S
Sbjct: 169 RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN--- 229
           + + MYA  G ++ A+   D       + WNALI G+ + G+ E A  L    + KN   
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP 288

Query: 230 -------------------TGSY-----------------NAMISGFARFGRFEEARKLF 253
                               G +                 N ++  +A+ G  ++A+++F
Sbjct: 289 THFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + +   D ++W+ ++ G  + G  KE L+ F +M R  I+P +    CVL AC+  G LD
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGL 372
           +G++  + +K+  +  D       VD+  + G LD A +   +M ++     W A++G  
Sbjct: 409 EGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468

Query: 373 AMH 375
            MH
Sbjct: 469 RMH 471



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALV 338
            L   + +QR  + P   + S +L  C  LG ++QG  +H H V  + +    VL   +V
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MYAKCG LD A ++F++M  K++ TW A+I G + + R  DA+ LF +M R   +P+  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T + +L A      +D G Q   +  + YG    V     +VD+  R G++  A+     
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           MP +   + W AL+    + GE   GE    +L +M+ +N
Sbjct: 250 MPTKSEVS-WNALISGHARKGE---GEHALHLLWKMQRKN 285


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 322/578 (55%), Gaps = 55/578 (9%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P +  Y  +   C+     K+G  +HAH+  +    D+ + +  + MYA  G + +A+ 
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--------------------------- 222
           + D     D++ W  LI GY + G    A  LF                           
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 223 ------------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                       K   D N    ++++  +AR+    EA+ +FN +  K+ ++W+A+I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           + + G  +  + +F +M R   +P  F  S VLA CAS G+L+QG W+H HV ++     
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPI 340

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           A +G  L+DMYAK G +  A KVF  +  +++ +WN++I G A HG   +A++LF +M +
Sbjct: 341 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK 400

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
            K++P+ ITF  VL+AC+H+G++D G      M++ + I+ +V H+  +VDLLGRAG L 
Sbjct: 401 AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLN 459

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA + I  MP++P AAVW ALLGACR H  ++ G    + + E++P +            
Sbjct: 460 EANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYA 519

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R  D AK+RK+MKE G+K  P  S +++   +H F   D SHP  +EI  M +KI  
Sbjct: 520 SAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISG 579

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           K+K  GY P++S VLF ++++++E   +YHSEKLA+AF  + T PG TIR+ KN+R+C D
Sbjct: 580 KIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGD 639

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CHSA K  S+V  R+IIVRD  R+HHF +G CSC D+W
Sbjct: 640 CHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 188/390 (48%), Gaps = 43/390 (11%)

Query: 31  QKTILDILNTKCHTSWQHLKQAHAVI--LKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           ++T+   +  KC T  + LKQ  A+   ++S  F+D  V    +  +  ++  + E A  
Sbjct: 104 ERTLYSKMLNKC-TYLRKLKQGRAIHAHIQSSTFEDDLVLLNFI-LNMYAKCGSLEEAQD 161

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ +   ++  W  ++    +  +    ++L+ +M+ +  +PN+FT  ++ KA     +
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           D  G Q+HA  +K G   +VHV SS + MYA +  + +A+ I +  +  +V+ WNALI G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 209 YLKCGDIEGAKELFK---------------------STKDKNTGSY-------------- 233
           + + G+ E    LF                      S+     G +              
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIA 341

Query: 234 ---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
              N +I  +A+ G  ++A+K+F  +  +D ++W++II GY + G   EAL++F +M + 
Sbjct: 342 YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKA 401

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
           K++P +     VL AC+  G LD+G +  + +K++ I         +VD+  + GRL+ A
Sbjct: 402 KVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEA 461

Query: 351 WKVFEDMKMKEV-FTWNAMIGGLAMHGRAD 379
            K  E+M +K     W A++G   MH   D
Sbjct: 462 NKFIEEMPIKPTAAVWGALLGACRMHKNMD 491



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L V + +    ++P + + S +L  C  L  L QG  IH H++ ++   D VL   +++M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG L+ A  +F+ M  K++ +W  +I G +  G+A +A+ LF KM     +P+  T 
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           + +L A    G  D   + L      YG D  V     ++D+  R  ++ EA+ + +S+ 
Sbjct: 210 SSLLKASG-TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            + N   W AL+    + GE   GE + ++  +M  Q
Sbjct: 269 AK-NVVSWNALIAGHARKGE---GEHVMRLFXQMLRQ 301


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/583 (36%), Positives = 331/583 (56%), Gaps = 41/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF ++ +     WN+++   +        ++L  +M  +  + +  TY T+  AC+ 
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             + + G QVHA+++KN L  +               C++ +               NAL
Sbjct: 302 VGSFQMGKQVHAYILKNELNPNHSF------------CLSVS---------------NAL 334

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y K   ++ A+++F +   +N  ++NA++SG+   GR EEA+  F EM  K+ +T +
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLT 394

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I G  ++G+  E L++F +M+ D  +P  F  +  L AC+ LGAL+ G  +H  +   
Sbjct: 395 VMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL 454

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
                  +G A++ MYAKCG ++ A  VF  M   ++ +WN+MI  L  HG    AIELF
Sbjct: 455 GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M +E + PDRITF  VL+AC+HAG++++G      M + YGI P  +HY  +VDL  R
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCR 574

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG  + A  VI SMP +P A VWEALL  CR HG ++ G    + L ++ PQN       
Sbjct: 575 AGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLL 634

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   R ++VAK+RKLM+++ ++  P  S I+V   +H F   D  HP+V  +Y  L
Sbjct: 635 SNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYL 694

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++  ++K  GY P++  VL D++ E+KE A   HSEKLA+ FG +   PGAT+RV KN+
Sbjct: 695 EQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNI 754

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH+A K +SKV +R+IIVRDR R+HHF+NG CSC D+W
Sbjct: 755 RICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 197/448 (43%), Gaps = 82/448 (18%)

Query: 80  FSNFELALKVFNS--VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
             N EL  ++FN   ++  +   +N+++     + +    + L+  M   D +P+ FT+ 
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 138 TVFKACSITEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           +V  A  +   +++   Q+H  VVK G+                 GCV+ +         
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGM-----------------GCVSSS--------- 185

Query: 197 SDVICWNALIDGYLK--------CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                 NAL+  Y+K        C  +  A++LF     ++  ++  MI+G+ R      
Sbjct: 186 ----VLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNG 241

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR++F  M +     W+A+I GY   G ++EAL +  +M+   I+      + +++ACA+
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 309 LGALDQGIWIHDHVKRN------SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           +G+   G  +H ++ +N      S C+   +  AL+ +Y K  ++D A K+F  M ++ +
Sbjct: 302 VGSFQMGKQVHAYILKNELNPNHSFCLS--VSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 363 FTWNA-------------------------------MIGGLAMHGRADDAIELFFKMQRE 391
            TWNA                               MI GLA +G  D+ ++LF +M+ +
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
              P    FA  L+AC+  G ++ G Q    +  + G +  +     ++ +  + G +  
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEA 478

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHG 479
           AE V  +MP   +   W +++ A  +HG
Sbjct: 479 AESVFVTMP-SVDLVSWNSMIAALGQHG 505



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 176/423 (41%), Gaps = 95/423 (22%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VHAH++ +G     H  +  ++MY     +  ARQ+ ++    D I    LI  Y   G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 215 IEGAKELFKSTK--DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           +E  +E+F  T    +++  YNAMI+G+A  G                        DG++
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNG------------------------DGHS 130

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA-SLGALDQGIWIHDHVKRNSI-CVD 330
                  ALE+F  M+RD  +P  F  + VL+A    +G   Q   +H  V +  + CV 
Sbjct: 131 -------ALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVS 183

Query: 331 AVLGTALVDMYAK--------CGRLDMAWKVFEDMK----------------------MK 360
           + +  AL+ +Y K        C  +  A K+F++M                        +
Sbjct: 184 SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 361 EVF---------TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           EVF          WNAMI G    G   +A+ L  KM+   ++ D IT+  ++SACA+ G
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGC------IVDLLGRAGYLAEAEEVISSMPMEPNA 465
               G Q   Y+ +   ++P   H  C      ++ L  +   + EA ++  +MP+  N 
Sbjct: 304 SFQMGKQVHAYILK-NELNP--NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NI 359

Query: 466 AVWEALLGACRKHGEVE-----FGERLGKILLEME------PQNRRCDDVAKMRKLMKER 514
             W A+L      G +E     F E   K LL +        QN   D+  K+ K M+  
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 515 GIK 517
           G +
Sbjct: 420 GFE 422


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/596 (36%), Positives = 325/596 (54%), Gaps = 49/596 (8%)

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFT 135
           N+     +LA  +F S+   ++  WN+++    ++    + + L+S M+   S  P++FT
Sbjct: 240 NTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V  AC+     + G QVHA++++  +  +  V                         
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT------------------------ 335

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                  NALI  Y K G +E A+ +   +   D N  S+ A++ G+ + G  E AR++F
Sbjct: 336 -------NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             MN++D + W+A+I GY ++G   EA+++F  M     +P  + L+ VL+ CASL  LD
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGL 372
            G  IH    R+ +   + +  A++ MYA+ G    A ++F+ +   KE  TW +MI  L
Sbjct: 449 YGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A HG+ ++A+ LF +M R  + PDRIT+  VLSAC+HAG ++ G +    ++  + I PE
Sbjct: 509 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 568

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           + HY C+VDLL RAG  +EA+E I  MP+EP+A  W +LL ACR H   E  E   + LL
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628

Query: 493 EMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
            ++P N               R  D A++ K  KE+ ++   G S   +   IH F   D
Sbjct: 629 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADD 688

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
             HPQ   +Y M  ++ E++K  G+ P+   VL D+D+E KE     HSEKLAIAFG I+
Sbjct: 689 VVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS 748

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T    T+RV+KNLRVC DCH+A K ISKV  R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 749 TPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 210/478 (43%), Gaps = 53/478 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL--ALKVFNSV--HKPNVFVWNSVL 105
           +  HA  +K+G     Y+   L+  +  +      L  A ++F+ +   + NVF WNS+L
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 106 RACLEHNEPWRVISLYSEM------------VGVDS-------------------KPNKF 134
               +         +++EM            VG++                     P +F
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T   V  +C++T+A   G +VH+ VVK GL   V V +S + MY   G    A  + +  
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 225

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
               V  WNA++      G ++ A+ LF+S  D++  S+NAMI+G+ + G   +A KLF+
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 255 EMNDK-----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +     DE T ++++      G  +   +V   + R ++     V + +++  A  
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G+++    I D      + V  +  TAL++ Y K G ++ A ++F  M  ++V  W AMI
Sbjct: 346 GSVENARRIMDQSMETDLNV--ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ-----ALTYMQ 424
            G   +GR D+AI+LF  M      P+  T A VLS CA    +D G Q       + ++
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           Q   +         I+ +  R+G    A  +   +        W +++ A  +HG+ E
Sbjct: 464 QSSSVS------NAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 169/392 (43%), Gaps = 65/392 (16%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  + + C        G  +HA  VK GL    ++ ++ +  Y                 
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYG---------------- 72

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                      +     G +  A+ LF       +N  ++N+++S FA+ GR  +AR +F
Sbjct: 73  -----------ETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVF 121

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            EM ++D ++W+ ++ G  + G + EA++   +M  D   P +F L+ VL++CA   A  
Sbjct: 122 AEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGA 181

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKC----------------------------- 344
            G  +H  V +  +     +  ++++MY KC                             
Sbjct: 182 VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 241

Query: 345 --GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFA 401
             GR+D+A  +FE M  + + +WNAMI G   +G    A++LF +M  E  M PD  T  
Sbjct: 242 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301

Query: 402 CVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSM 459
            VLSACA+ G +  G Q   Y ++     + +V +   ++    ++G +  A  ++  SM
Sbjct: 302 SVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSM 359

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             + N   + ALL    K G++E    +  ++
Sbjct: 360 ETDLNVISFTALLEGYVKIGDMESAREMFGVM 391


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/623 (35%), Positives = 341/623 (54%), Gaps = 55/623 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACS 144
           A +VF+ +   +   WN+++     +      + +   M   +  +P+  T  +V  AC+
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A     + HA  +++GL   V+V ++ +  Y   G +  AR + D     + + WNA
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 205 LIDGYLKCGDIEGAKELF---------------------------------------KST 225
           +IDGY + GD   A  LF                                       +  
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D N    NA+I+ +++  R + A  +F+E++ + +++W+A+I G  ++G  ++A+ +F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            MQ + +KP  F L  V+ A A +    Q  WIH +  R  +  D  + TAL+DMYAKCG
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           R+++A  +F   + + V TWNAMI G   HG    A+ELF +M+   + P+  TF  VLS
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG++D G +  T M++ YG++P +EHYG +VDLLGRAG L EA   I  MPM+P  
Sbjct: 473 ACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
           +V+ A+LGAC+ H  VE  E   + + E+ PQ                   DVA++R  M
Sbjct: 533 SVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAM 592

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           ++ G++  PG S+I +   IH F +G  +H Q KEIY  L K+IE++K  GY P++  + 
Sbjct: 593 EKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI- 651

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++++ K      HSEKLAIAFG I T PG TI++ KNLRVC DCH+ATKLIS V  R+
Sbjct: 652 HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGRE 711

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           II+RD  R+HHF++GKCSC D+W
Sbjct: 712 IIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 198/434 (45%), Gaps = 51/434 (11%)

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           LRA    ++    ++ +  M    + P   T+ ++ K C+       G  VHA +   G+
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL--- 221
             +    ++   MYA       AR++ D     D + WNAL+ GY + G    A E+   
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 222 -------------------------------------FKSTKDKNTGSYNAMISGFARFG 244
                                                 +S  ++      A++  + + G
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
               AR +F+ M  K+ ++W+A+IDGY ++G  +EAL +FN M  + +      +   L 
Sbjct: 211 DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQ 270

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC  LG LD+G+ +H+ + R  +  +  +  AL+ MY+KC R+D+A  VF+++  +   +
Sbjct: 271 ACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVS 330

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL---T 421
           WNAMI G A +G ++DA+ LF +MQ E ++PD  T   V+ A A    I   LQA     
Sbjct: 331 WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD---ISDPLQARWIHG 387

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           Y  +++ +D +V     ++D+  + G +  A  + +S   E +   W A++     HG  
Sbjct: 388 YSIRLH-LDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHG-- 443

Query: 482 EFGERLGKILLEME 495
            FG+   ++  EM+
Sbjct: 444 -FGKAAVELFEEMK 456



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 45/367 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           +AHA  ++SG   +  V+       A  +  +   A  VF+ +   N   WN+++    +
Sbjct: 182 EAHAFAIRSG--LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +    ++L++ MV         +     +AC       EG++VH  +V+ GL  +V V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK---- 226
            ++ I MY+    V+ A  + D+  +   + WNA+I G  + G  E A  LF   +    
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 227 -----------------------------------DKNTGSYNAMISGFARFGRFEEARK 251
                                              D++     A+I  +A+ GR   AR 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LFN   ++  ITW+A+I GY   G+ K A+E+F EM+   I P +     VL+AC+  G 
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 312 LDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAM 368
           +D+G      +K +      +   GT +VD+  + G+LD AW   + M M    + + AM
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGT-MVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 369 IGGLAMH 375
           +G   +H
Sbjct: 539 LGACKLH 545



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 6/277 (2%)

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           D    +  A+ + +A+  R  +AR++F+ M  +D + W+A++ GY ++G  + A+E+   
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 287 MQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           MQ ++  +P    L  VL ACA+  AL      H    R+ +     + TA++D Y KCG
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A  VF+ M  K   +WNAMI G A +G + +A+ LF +M  E +    ++    L 
Sbjct: 211 DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQ 270

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC   G +D G++    + ++ G+D  V     ++ +  +   +  A  V   +      
Sbjct: 271 ACGELGCLDEGMRVHELLVRI-GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQV 329

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
           + W A++  C ++G  E   RL      M+ +N + D
Sbjct: 330 S-WNAMILGCAQNGCSEDAVRL---FTRMQLENVKPD 362


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/596 (36%), Positives = 325/596 (54%), Gaps = 49/596 (8%)

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFT 135
           N+     +LA  +F S+   ++  WN+++    ++    + + L+S M+   S  P++FT
Sbjct: 240 NTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V  AC+     + G QVHA++++  +  +  V                         
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT------------------------ 335

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                  NALI  Y K G +E A+ +   +   D N  S+ A++ G+ + G  E AR++F
Sbjct: 336 -------NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMF 388

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             MN++D + W+A+I GY ++G   EA+++F  M     +P  + L+ VL+ CASL  LD
Sbjct: 389 GVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLD 448

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGL 372
            G  IH    R+ +   + +  A++ MYA+ G    A ++F+ +   KE  TW +MI  L
Sbjct: 449 YGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A HG+ ++A+ LF +M R  + PDRIT+  VLSAC+HAG ++ G +    ++  + I PE
Sbjct: 509 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 568

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           + HY C+VDLL RAG  +EA+E I  MP+EP+A  W +LL ACR H   E  E   + LL
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628

Query: 493 EMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
            ++P N               R  D A++ K  KE+ ++   G S   +   IH F   D
Sbjct: 629 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADD 688

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
             HPQ   +Y M  ++ E++K  G+ P+   VL D+D+E KE     HSEKLAIAFG I+
Sbjct: 689 VVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS 748

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T    T+RV+KNLRVC DCH+A K ISKV  R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 749 TPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 209/474 (44%), Gaps = 45/474 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL--ALKVFNSV--HKPNVFVWNSVL 105
           +  HA  +K+G     Y+   L+  +  +      L  A ++F+ +   + NVF WNS+L
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 106 RACLEHNEPWRVISLYSEM------------VGVDS-------------------KPNKF 134
               +         +++EM            VG++                     P +F
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T   V  +C++T+A   G +VH+ VVK GL   V V +S + MY   G    A  + +  
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERM 225

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
               V  WNA++      G ++ A+ LF+S   ++  S+NAMI+G+ + G   +A KLF+
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 255 EMNDK-----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +     DE T ++++      G  +   +V   + R ++     V + +++  A  
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G+++    I D      + V  +  TAL++ Y K G ++ A ++F  M  ++V  W AMI
Sbjct: 346 GSVENARRIMDQSMETDLNV--ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA-LTYMQQMYG 428
            G   +GR D+AI+LF  M      P+  T A VLS CA    +D G Q     ++ +  
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
               V +   I+ +  R+G    A  +   +        W +++ A  +HG+ E
Sbjct: 464 RSSSVSN--AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 169/392 (43%), Gaps = 65/392 (16%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  + + C        G  +HA  VK GL    ++ ++ +  Y                 
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYG---------------- 72

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                      +     G +  A+ LF       +N  ++N+++S FA+ GR  +AR +F
Sbjct: 73  -----------ETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVF 121

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            EM ++D ++W+ ++ G  + G + EA++   +M  D   P +F L+ VL++CA   A  
Sbjct: 122 AEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGA 181

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKC----------------------------- 344
            G  +H  V +  +     +  ++++MY KC                             
Sbjct: 182 VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNT 241

Query: 345 --GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFA 401
             GR+D+A  +FE M  + + +WNAMI G   +G    A++LF +M  E  M PD  T  
Sbjct: 242 HLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301

Query: 402 CVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSM 459
            VLSACA+ G +  G Q   Y ++     + +V +   ++    ++G +  A  ++  SM
Sbjct: 302 SVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSM 359

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             + N   + ALL    K G++E    +  ++
Sbjct: 360 ETDLNVISFTALLEGYVKIGDMESAREMFGVM 391


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/648 (34%), Positives = 346/648 (53%), Gaps = 80/648 (12%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           +I  S F ++ ++ ++ +  H S   L Q HA I+ +   QD  VS   +   A++ F +
Sbjct: 19  SISFSHFEREPLISLIKSCTHKS--QLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRD 76

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
              + ++F+ +  P V  +N++LRA      P   + +Y +M     + +  +     K+
Sbjct: 77  LGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKS 136

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C    +   G+Q+HA +  NG                                ++D +  
Sbjct: 137 CIKLLSLLFGIQIHARIFING-------------------------------HQADSLLL 165

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
            +++D Y  CG                               + EEA KLF+E+  KD +
Sbjct: 166 TSMMDLYSHCG-------------------------------KPEEACKLFDEVPQKDVV 194

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKI--KPRKFVLSCVLAACASLGALDQGIWIHD 320
            W+ +I   T++   ++AL +F  MQ      +P K     +L ACA L AL+ G  IH 
Sbjct: 195 AWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHG 254

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           +++++    ++ L  +L+ MY++CGR+D A++VF+ M  K V +W+AMI GL+M+G   +
Sbjct: 255 YIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGRE 314

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AIE F++MQ+  + P   TF  VLSAC+H G++D G+     M+Q + I P V HYGCIV
Sbjct: 315 AIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIV 374

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR- 499
           DLLGRAG L +A E+I SM + P+A +W  LLGACR HG    GER+ + L+E++ Q   
Sbjct: 375 DLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAG 434

Query: 500 -------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                          D V ++RKLMKE+GI T P  + I++NGV+H+F   D SHP   +
Sbjct: 435 DYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDK 494

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           IY  L +I ++LK+ GY    S  L  ++ ++K  A   HSEKLAIAFG + T PG TIR
Sbjct: 495 IYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIR 554

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  N+R C DCH+  K IS V+ R ++VRDR R+HHF+ G+CSCNDFW
Sbjct: 555 IANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 329/595 (55%), Gaps = 23/595 (3%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            ELA ++     +P +  WN+VL  C  H      +++   M+     P+  T  ++ K+
Sbjct: 257 MELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKS 316

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            +     + G++VH   +++GL  D +  ++ + MYA  G ++ AR++ D     ++  W
Sbjct: 317 VANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATW 376

Query: 203 NALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN- 257
           N+L+ G+   G  E A EL +  K    D N  ++N +I+G++  G   +A  L  ++  
Sbjct: 377 NSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKA 436

Query: 258 ---DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
                + ++W+++I G   +G Y+++   F EMQ+D ++P    +  +L ACA L  L +
Sbjct: 437 AGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKK 496

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    R +   D V+GTAL+DMY+K G L  A ++F  ++ K +   NAM+ GLA+
Sbjct: 497 GKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAV 556

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG++ +AI LF  + R  ++PD ITF  +L+AC   G+I  G +    M+  YG+ P  E
Sbjct: 557 HGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAE 616

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +Y C+VDLL R+GYL EA  +I   P++P A++W ALL  C  HG ++  E   + L  +
Sbjct: 617 NYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRL 676

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP N              +  D+   ++  MK RG+ T PG S I +   IH F      
Sbjct: 677 EPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSP 736

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP+  EI   L  ++ ++KM GY P++S V++++ EEEKE     H+EKLAI +G I++D
Sbjct: 737 HPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITYGLIHSD 796

Query: 601 PG-ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
                +RVIKN R+C DCH   K IS +  R II+RD VR+HHF +G CSCND+W
Sbjct: 797 ASRMPVRVIKNTRMCSDCHEVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDYW 851



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 162/353 (45%), Gaps = 44/353 (12%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +  +WN  +    E  E    I  + EM       + +    V  AC    A +EG  VH
Sbjct: 133 DAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVH 192

Query: 157 AHVVKNGLCGDVHVKSSGI--QMYACFGCVNKARQILDDGSKSD-VICWNALIDGYLKCG 213
           AH +K GL  D H    G    MYA    V  A  +L   +     + W+A++   ++ G
Sbjct: 193 AHALKAGLV-DAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLG 251

Query: 214 DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
            ++ A EL     +   +    ++NA++SG AR GR                        
Sbjct: 252 LVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGR------------------------ 287

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
                   +EAL V   M    + P    +S +L + A+ G +  G+ +H    R+ +  
Sbjct: 288 -------DREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVP 340

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           DA  GTALVDMYAKCGRLD A +VF+ ++ + + TWN+++ G A  G+ + A+EL  +M+
Sbjct: 341 DAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMK 400

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIV 440
           R ++ P+  T+  +++  +  G+     QA+  ++Q+   G+ P V  +  ++
Sbjct: 401 RNRLDPNVTTWNGLITGYSLNGLSS---QAMLLLRQIKAAGLTPNVVSWTSLI 450



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 167/397 (42%), Gaps = 20/397 (5%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +H  + H   L+ G   D Y    LV  +A  +    + A +VF+++   N+  WNS++ 
Sbjct: 324 RHGMEVHCFFLRHGLVPDAYTGTALVDMYA--KCGRLDCARRVFDTLEHRNLATWNSLVA 381

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
                 +    + L   M      PN  T+  +    S+     + + +   +   GL  
Sbjct: 382 GHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTP 441

Query: 167 DVHVKSSGIQMYACFG----CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL- 221
           +V   +S I      G      N  +++  DG +  ++    L+        ++  KEL 
Sbjct: 442 NVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELH 501

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               +   D +     A+I  +++ G    A+++F  + +K+ +  +A++ G    G   
Sbjct: 502 CFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSH 561

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-L 337
           EA+ +F+++ R  +KP     + +L AC S+G + +G    D+++     V      A +
Sbjct: 562 EAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACM 621

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGR---ADDAIELFFKMQREKM 393
           VD+ A+ G LD A  + E   +      W A++ G ++HG    A+ A    F+++    
Sbjct: 622 VDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPY-- 679

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
             +   +  ++S   H  M D    +L Y  +  G++
Sbjct: 680 --NSANYLMIMSLYEHEQMYDEA-DSLKYAMKARGVN 713



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 16/260 (6%)

Query: 240 FARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
            AR GR   +R+L  E ++    KD + W+  +    + G + EA+  F EMQ   +   
Sbjct: 109 LARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAAD 168

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA--VLGTALVDMYAKCGRLDMAWKV 353
            + L+ VL AC    A  +G  +H H  +  + VDA  ++   L  MYA+   +  A  V
Sbjct: 169 GYALARVLHACGRAAARREGKAVHAHALKAGL-VDAHPLVPGFLAGMYAEGADVAAATAV 227

Query: 354 F-EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
                       W+A++      G  DDA+EL  +M R+   P   T+  VLS CA  G 
Sbjct: 228 LLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHG- 286

Query: 413 IDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAAV 467
             R  +AL  +++M   G+ P+      ++  +  AG +    EV        + P+A  
Sbjct: 287 --RDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYT 344

Query: 468 WEALLGACRKHGEVEFGERL 487
             AL+    K G ++   R+
Sbjct: 345 GTALVDMYAKCGRLDCARRV 364



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 30/277 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H   L+  +  D  V   L+  +  S+  +   A ++F  +   N+   N++L    
Sbjct: 498 KELHCFALRRAYDCDMVVGTALIDMY--SKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLA 555

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV-VKNGLCGDV 168
            H +    I+L+ ++     KP+  T+  +  AC       EG +   ++  K G+    
Sbjct: 556 VHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTA 615

Query: 169 HVKSSGIQMYACFGCVNKA-----RQILDDGSKSDVICWNALIDGYLKCGDIE----GAK 219
              +  + + A  G +++A     R  +D G+      W AL+ G    G+++     A+
Sbjct: 616 ENYACMVDLLARSGYLDEAMALIERSPVDPGAS----LWGALLTGCSIHGNLDLAEVAAR 671

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-----NDKDEITWSAIIDG---Y 271
            LF+  +  N+ +Y  ++S +     ++EA  L   M     N +   +W  I  G   +
Sbjct: 672 NLFR-LEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVF 730

Query: 272 TKDGY-YKEALEVFNEMQR--DKIKPRKFV--LSCVL 303
             DG  + E  E+  E+     +IK   +V   SCV+
Sbjct: 731 EVDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVV 767


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 312/552 (56%), Gaps = 87/552 (15%)

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
            TYP V KAC+ +     G+ VH HV K+G   D ++ SS I +YA    +  A+Q+ + 
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59

Query: 194 GSKSDVICWNALIDGYLK-------------------------------CGDIEGAKELF 222
            S  D++ WNA+IDGY+K                                G I+ AK LF
Sbjct: 60  CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF 119

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               ++N  S N+M+ GF + G  E+A  LF+EM  +D ++W++++  Y + G   EAL 
Sbjct: 120 DEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F++M    +KP +  +  +L+ACA LGALD+G+ +H ++  N I V++++GTALVDMYA
Sbjct: 180 LFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 239

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG++ +A +VF  M+ K+V  WN +I G+A+ G   +A +LF +M+   + P+ ITF  
Sbjct: 240 KCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVA 299

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +LSAC+HAGM+D G + L  M   YGI+P+VEHYGC++DLL RAG L EA E+I +MPME
Sbjct: 300 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME 359

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS 522
           PN     ALLG CR HG  E GE +GK L+ ++P         +  +L    G   + G+
Sbjct: 360 PNPCALGALLGGCRIHGNFELGEMVGKRLINLQP--------CQSGRLKSAIGXSADTGN 411

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
            ++                                               D++EE+KE A
Sbjct: 412 XLL-----------------------------------------------DMEEEDKEHA 424

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIA+G ++ D    IR++KNLRVC DCH  TKLISKV+  +IIVRDR R+HH
Sbjct: 425 LAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDRNRFHH 484

Query: 643 FRNGKCSCNDFW 654
           F +G+CSC DFW
Sbjct: 485 FEDGECSCLDFW 496



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
            VKC       N E A  +F+ +   +V  WNS+L    +  +P   ++L+ +M  V  K
Sbjct: 137 FVKC------GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVK 190

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P++ T  ++  AC+   A  +G+ +H ++  N +  +  V ++ + MYA  G ++ A Q+
Sbjct: 191 PSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 250

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRF 246
            +     DV+ WN +I G    G ++ A++LFK  K+     N  ++ AM+S  +  G  
Sbjct: 251 FNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMV 310

Query: 247 EEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           +E +KL + M+    I      +  +ID   + G  +EA+E+   M    ++P    L  
Sbjct: 311 DEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNPCALGA 367

Query: 302 VLAACASLGALDQG 315
           +L  C   G  + G
Sbjct: 368 LLGGCRIHGNFELG 381


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/633 (36%), Positives = 343/633 (54%), Gaps = 32/633 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWNSVLRA 107
           +  HAV   SG  +D +V+ +L+  HA  R      A  +F+ + +P   V  W++++ A
Sbjct: 37  RALHAVAEVSGLARDPFVASSLL--HAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAA 94

Query: 108 CLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
                +    WR++       GV+  PN  T+  +    + +   ++ V   A +   GL
Sbjct: 95  HAARGDAEGAWRLLEEMRRDGGVE--PNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 165 C-GDVHVKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAK 219
              D    S  +      G V+  +Q+    +  G ++D     ALID Y KCG      
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDG 275
            +F  +   +  S NA+I+G +R  +  EA +LF E  D+    + ++W++I+    ++G
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
              EA+E F EMQ    +P    + CVL A A++ AL  G   H    R     D  + +
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSS 332

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           ALVDMYAKCGR+  A  +F+ M  + V +WNAMIGG AM+G A +A+ +F  M + K +P
Sbjct: 333 ALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKP 392

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D +TF C+L+AC  AG+ + G      M   YG+ P +EHY C+V LLGRAG L EA ++
Sbjct: 393 DMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDL 452

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRC 501
           IS MP EP+A +W +LLG+CR HG V+  E   + L  +EP+N              +  
Sbjct: 453 ISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMW 512

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           D V ++R++MK+ G+K   G S I++   +H    GD SHP +  I   + ++  +++  
Sbjct: 513 DRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKL 572

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           G+ P++  VL D++E+EK+     HSEKLA+A G I+T PG T+RVIKNLR+C DCH A 
Sbjct: 573 GFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAM 632

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K IS    R+I VRD  R+HHF  GKCSC DFW
Sbjct: 633 KFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 166/404 (41%), Gaps = 77/404 (19%)

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
           SL+  +  V   P+    PT FK+C      +    +HA    +GL  D  V SS +  Y
Sbjct: 6   SLHHFLRHVSFPPDPHLLPTAFKSCPTLPLAR---ALHAVAEVSGLARDPFVASSLLHAY 62

Query: 179 ACFGCVNKARQILDDGSKSD--VICWNALIDGYLKCGDIEGAKELFKSTK-----DKNTG 231
              G    AR + D   +    V+ W+AL+  +   GD EGA  L +  +     + N  
Sbjct: 63  LRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVI 122

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           ++N ++SG  R GR             +D +   A + G        E L          
Sbjct: 123 TWNGLVSGLNRSGR------------ARDAVVALATMHG--------EGL---------- 152

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P    +SC L+A   +G +  G  +H +  +     DA + TAL+DMY KCG+     
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 352 KVFEDMKMKEVFTWNAMIGGLA-----------------------------------MHG 376
           +VF++    +V + NA+I GL+                                    +G
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           +  +A+E F +MQ +   P+ +T  CVL A A+   +  G  A  +  +  G   +V   
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALR-KGFLHDVYVS 331

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             +VD+  + G + +A  +  +M +  N   W A++G    +GE
Sbjct: 332 SALVDMYAKCGRVKDARIIFDTM-VSRNVVSWNAMIGGYAMYGE 374



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 24/229 (10%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H + AH   L+ G   D YVS  LV  +A  +    + A  +F+++   NV  WN+++  
Sbjct: 311 HGRSAHCFALRKGFLHDVYVSSALVDMYA--KCGRVKDARIIFDTMVSRNVVSWNAMIGG 368

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              + E    + ++  M+    KP+  T+  +  AC+     +EG     H  K     +
Sbjct: 369 YAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEG----RHYFKE--MHN 422

Query: 168 VHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIE--- 216
            +  S  ++ YAC        G +++A  ++ D   + D   W +L+      G+++   
Sbjct: 423 EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAE 482

Query: 217 -GAKELFKSTKDKNTGSYNAMISGFAR---FGRFEEARKLFNEMNDKDE 261
             A++LF   + +N G+Y  + + +A    + R    R++  ++  K E
Sbjct: 483 VAAEKLFH-LEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKE 530


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/634 (36%), Positives = 350/634 (55%), Gaps = 65/634 (10%)

Query: 50  KQAHAVILKSG--HFQDHYVSGTLVKCHANSRFSNFELALKVFNSV---HKPNVFVWNSV 104
           K+ HAV+  SG       Y+S  L + +A+S       A K+F+ +    K NV  W ++
Sbjct: 26  KELHAVLTTSGLKKAPRSYLSNALFQFYASS--GEMVTAQKLFDEIPLSEKDNVD-WTTL 82

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           L +   +      + L+ EM     + +  +   +F  C+  E      Q H   VK G+
Sbjct: 83  LSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGV 142

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
              V V                                NAL+D Y KCG +   K +F+ 
Sbjct: 143 LTSVKV-------------------------------CNALMDMYGKCGLVSEVKRIFEE 171

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
            ++K+  S+  ++    ++   E  R++F+EM +++ + W+ ++ GY   G+ +E LE+ 
Sbjct: 172 LEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELL 231

Query: 285 NEMQRDKIKPRKFVLSC-VLAACASLGALDQGIWIHDHVKRNSICV-------DAVLGTA 336
            EM         FV  C +L+ACA  G L  G W+H +  +  + +       D ++GTA
Sbjct: 232 AEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTA 291

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMYAKCG +D +  VF  M+ + V TWNA+  GLAMHG+    I++F +M RE ++PD
Sbjct: 292 LVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPD 350

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            +TF  VLSAC+H+G++D G +    ++  YG++P+V+HY C+VDLLGRAG + EAE ++
Sbjct: 351 DLTFTAVLSACSHSGIVDEGWRCFHSLR-FYGLEPKVDHYACMVDLLGRAGLIEEAEILM 409

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP+ PN  V  +LLG+C  HG+VE  ER+ + L++M P N               R D
Sbjct: 410 REMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSD 469

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
               +R  +++RGI+  PG S I VN  +H F +GD SHP+ KEIYL L ++IE+++  G
Sbjct: 470 IADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAG 529

Query: 563 YSPNSSQVLF--DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           Y P+ S ++   + D EEKE A   HSEKLA+ FG + T P   + V KNLR+C DCHSA
Sbjct: 530 YVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSA 589

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K++SKV+ R+II+RDR R+H F+ G CSC+D+W
Sbjct: 590 MKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/655 (34%), Positives = 346/655 (52%), Gaps = 57/655 (8%)

Query: 54  AVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE 113
           A +LK+G+F  H   G  +         + + A  VF+ +   N+  W  ++    +   
Sbjct: 169 AFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGL 228

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
               + L+  ++  +  P+KFT  ++  AC   E    G Q+H+ V+++GL  DV V  +
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCT 288

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----------- 222
            + MYA    V  +R+I +     +V+ W ALI GY++    + A +LF           
Sbjct: 289 LVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPN 348

Query: 223 -----------KSTKDKNTGSY-----------------NAMISGFARFGRFEEARKLFN 254
                       S  D   G                   N++I+ +AR G  E ARK FN
Sbjct: 349 CFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFN 408

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFN-EMQRDKIKPRKFVLSCVLAACASLGALD 313
            + +K+ I+++   D   K     ++ E FN E++   +    F  +C+L+  A +G + 
Sbjct: 409 ILFEKNLISYNTAADANAKA---LDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIV 465

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +G  IH  + ++    +  +  AL+ MY+KCG  + A +VF DM  + V TW ++I G A
Sbjct: 466 KGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFA 525

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG A  A+ELF++M    ++P+ +T+  VLSAC+H G+ID   +    M   + I P +
Sbjct: 526 KHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRM 585

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C+VDLLGR+G L EA E I+SMP + +A VW   LG+CR H   + GE   K +LE
Sbjct: 586 EHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILE 645

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
            EP +               R DDVA +RK MK++ +    G S I+V+  +H+F  GD 
Sbjct: 646 REPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDT 705

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHPQ ++IY  L ++  K+K  GY PN+  VL D+++E+KE     HSEK+A+A+  I+T
Sbjct: 706 SHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALIST 765

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
                IRV KNLRVC DCH+A K IS V  R+I+VRD  R+HH ++GKCSCND+W
Sbjct: 766 PKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 165/366 (45%), Gaps = 43/366 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H+ +++SG   D +V  TLV  +A S  +  E + K+FN++   NV  W +++   +
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKS--AAVENSRKIFNTMLHHNVMSWTALISGYV 325

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  +    I L+  M+     PN FT+ +V KAC+       G Q+H   +K GL     
Sbjct: 326 QSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINC 385

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD--------------- 214
           V +S I MYA  G +  AR+  +   + ++I +N   D   K  D               
Sbjct: 386 VGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVG 445

Query: 215 ---------IEGA-------------KELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                    + GA               + KS    N    NA+IS +++ G  E A ++
Sbjct: 446 ASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQV 505

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           FN+M  ++ ITW++II G+ K G+  +ALE+F EM    +KP +     VL+AC+ +G +
Sbjct: 506 FNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLI 565

Query: 313 DQGIWIHDHVK--RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMI 369
           D+  W H +     +SI         +VD+  + G L  A +    M    +   W   +
Sbjct: 566 DEA-WKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFL 624

Query: 370 GGLAMH 375
           G   +H
Sbjct: 625 GSCRVH 630



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 212/492 (43%), Gaps = 57/492 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV--HKPNVFVWNSVLRA 107
           K  H  ++ SG   D  +  +L+  +  S+  ++E AL +F ++  HK ++  W++++  
Sbjct: 59  KLLHHKLIDSGLPLDSVLLNSLITLY--SKCGDWENALSIFRNMGHHKRDLVSWSAIISC 116

Query: 108 CLEHNEPWRVISLYSEMVGVDSK---PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
              ++   R +  +  M+        PN++ +  + ++CS       G+ + A ++K G 
Sbjct: 117 FANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGY 176

Query: 165 C-GDVHVKSSGIQMYACFGC-VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
               V V  + I M+   G  +  AR + D     +++ W  +I  Y + G ++ A +LF
Sbjct: 177 FDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLF 236

Query: 223 ------KSTKDKNTGSY---------------------------------NAMISGFARF 243
                 + T DK T +                                    ++  +A+ 
Sbjct: 237 CRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKS 296

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
              E +RK+FN M   + ++W+A+I GY +    +EA+++F  M    + P  F  S VL
Sbjct: 297 AAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVL 356

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            ACASL     G  +H    +  +     +G +L++MYA+ G ++ A K F  +  K + 
Sbjct: 357 KACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLI 416

Query: 364 TWNAMIGGLAMHGRADDAIELF-FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
           ++N        + +A D+ E F  +++   +     T+AC+LS  A  G I +G Q    
Sbjct: 417 SYNTAADA---NAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHAL 473

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           + +  G    +     ++ +  + G    A +V + M    N   W +++    KHG   
Sbjct: 474 IVKS-GFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHG--- 528

Query: 483 FGERLGKILLEM 494
           F  +  ++  EM
Sbjct: 529 FATKALELFYEM 540



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-- 357
           S +L AC   G L+ G  +H  +  + + +D+VL  +L+ +Y+KCG  + A  +F +M  
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHAGMID 414
             +++ +W+A+I   A +     A+  F  M    R  + P+   F  +L +C++     
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            GL    ++ +    D  V     ++D+  + G   ++  ++       N   W  ++
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMI 220


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/624 (35%), Positives = 343/624 (54%), Gaps = 56/624 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H+ I+K+G  +   +S TL+  +          AL++F+ +   +   W S+L A   
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGL--IPQALQLFDEMPNRDHVSWASILTA--- 78

Query: 111 HNE---PWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           HN+   P R +S+ + M   D  +P+ F +  + +ACS     + G QVHA  + +  C 
Sbjct: 79  HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCD 138

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D  VKSS                               LID Y KCG  + A+ +F S  
Sbjct: 139 DEVVKSS-------------------------------LIDMYTKCGQPDEARAVFDSIL 167

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            KN+ S+ +MISG+AR GR  EA  LF +   ++  +W+A+I G  + G+   +  +FNE
Sbjct: 168 FKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNE 227

Query: 287 MQRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M+R+ I      VLS V+  CA+L  L+ G  IH  V          +  ALVDMYAKC 
Sbjct: 228 MRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCS 287

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A  +F  M  K+V +W ++I G A HG+A++A+ L+ +M   +++P+ +TF  +L 
Sbjct: 288 DILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLY 347

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG++ RG +    M   Y I+P ++HY C++DLL R+G+L EAE ++  +P +P+ 
Sbjct: 348 ACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDE 407

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLM 511
             W +LL AC +H  +E G R+   +L+++P++                   V+K+RKLM
Sbjct: 408 PTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLM 467

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
               ++  PG S ID       F  G+   HP   EI  +LK +  +++  GY PN+S V
Sbjct: 468 SSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFV 527

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L+DI+++EKE    +HSE+LA+A+G +   PG  IR++KNLR+C DCH+  K IS + KR
Sbjct: 528 LYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKR 587

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +I+VRD  RYHHF+ GKCSCNDFW
Sbjct: 588 EIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA   +      +H  + +      ++L   L+D+Y KCG +  A ++F++M  ++ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 363 FTWNAMIGGLAMHGRA---DDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            +W ++   L  H +A      + +   M   + ++PD   FAC++ AC+  G +  G Q
Sbjct: 70  VSWASI---LTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQ 126

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
                      D EV     ++D+  + G   EA  V  S+  + N+  W +++    + 
Sbjct: 127 VHARFMLSXFCDDEVVK-SSLIDMYTKCGQPDEARAVFDSILFK-NSVSWTSMISGYARS 184

Query: 479 G 479
           G
Sbjct: 185 G 185


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 319/528 (60%), Gaps = 17/528 (3%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           +AV++K+   QD Y+    +   A S F+  + A+  +  +  PNVFV+N++++  ++  
Sbjct: 2   YAVMVKTNTNQDCYLMNQFIS--ALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSY 59

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +P + + LY +M+  +  P  +T+P++ KAC +    +    VH HV +NG    V V++
Sbjct: 60  QPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQT 119

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS 232
           S +  Y+  G + ++ ++ D+  + DV  W  ++ G ++ GD+  A  LF    D+N  +
Sbjct: 120 SLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLAT 179

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           +N +I G+AR    + A  LFN+M  +D I+W+ +I+ Y+++  ++EAL VFNEM +  I
Sbjct: 180 WNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGI 239

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P +  ++ V++ACA LGALD G  IH ++ ++   +D  +G+AL+DMYAKCG LD +  
Sbjct: 240 SPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLL 299

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           +F  ++ K +F WN++I GLA+HG A++A+ +F KM+REK++P+ +TF  VLSAC HAG+
Sbjct: 300 MFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGL 359

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           I+ G +    M + + I P VEHYGC+VDLL +AG L EA ++I +M +EPNA +W ALL
Sbjct: 360 IEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALL 419

Query: 473 GACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI-K 517
             C+ H  +E  +     L+ +EP N               R  + AK+R  MKE+G+ K
Sbjct: 420 SGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEK 479

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
             PGSS I++   +H+F   D SH    EIY +L ++  ++K+ GY P
Sbjct: 480 RCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVP 527


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/455 (42%), Positives = 285/455 (62%), Gaps = 25/455 (5%)

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK--------- 273
           +++ D+  G+  A++  FAR GR    RK+F+ + + D   W+A++  Y +         
Sbjct: 386 ETSCDRVLGA--ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACA 443

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
                  LE+F  M    IKP +  L  V+ AC  LGA+  G+W H +  +  + V+ ++
Sbjct: 444 SSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIV 503

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            TALV+MYA CGRLD+A +VF     ++   +NAM+ GLA+HG    A+ LF +M  E +
Sbjct: 504 ATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGV 563

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
             D +T   V+ ACAHAG++D GL     M+  +GI+P +EHYGC+VD+L RAG L +AE
Sbjct: 564 PVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAE 623

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------R 499
           ++I  MP+ PNAA++ +L+ AC  HG++E G+++   L+ +EP +               
Sbjct: 624 KLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTN 683

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R DD  K RK MK  GI  +PGSS +D+NGV+HEF  GD +HP  KEIY M++ I  +L 
Sbjct: 684 RWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLS 743

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             G+  ++S  LFD++EE+K  A  YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH 
Sbjct: 744 ECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHE 803

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + KL+S+V+ R+I++RDR R+HHFR+G CSC DFW
Sbjct: 804 SAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 22/289 (7%)

Query: 88  KVFNSVHKPNVFVWNSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           KVF+ +  P++  WN++L A             +    ++ ++  M+ +  KPN+ T   
Sbjct: 412 KVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVA 471

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV  H + VK  L  +  V ++ ++MYA  G ++ A Q+    S  D
Sbjct: 472 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRD 531

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
             C+NA++ G    G    A  LF     +       +  +++   A  G  +E    F+
Sbjct: 532 TRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 591

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  I      +  ++D  ++ G   +A ++ + M    I P   +   ++ AC   
Sbjct: 592 RMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGM---PIVPNAAIYRSLIRACGIH 648

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           G L+ G  +   + R     D+     + + YA   R D A K  ++MK
Sbjct: 649 GKLELGKKMIAELMRLEP-DDSGNHVLISNFYATTNRWDDAKKARKEMK 696


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/716 (33%), Positives = 365/716 (50%), Gaps = 108/716 (15%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVW 101
           S +H    HA++  +G   + ++  ++V  +   R    + A ++F+ V +    ++  W
Sbjct: 142 SLRHGASVHAIVCANGLGSNVFICNSIVAMYG--RCGALDDAHQMFDEVLERKIEDIVSW 199

Query: 102 NSVLRACLEHNEPWRVISLYSEM---VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158
           NS+L A ++  +    + +   M     +  +P+  T   +  AC+   A + G QVH  
Sbjct: 200 NSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGF 259

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-------------------GS---- 195
            V+NGL  DV V ++ + MYA    +N+A ++ +                    GS    
Sbjct: 260 SVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 196 ------------KSDVICWNALIDGYLKCGDIEGAKELFKSTK----------------- 226
                       K DVI W+A+I GY + G    A ++F+  +                 
Sbjct: 320 LSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG 379

Query: 227 ---------DKNTGSY--------------------NAMISGFARFGRFEEARKLFN--E 255
                     K T +Y                    N +I  +A+   +  AR +F+  E
Sbjct: 380 CASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIE 439

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEM--QRDKIKPRKFVLSCVLAACASLGALD 313
             DK+ +TW+ +I GY + G   +AL++F ++  Q+  +KP  F LSC L ACA LG L 
Sbjct: 440 GKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELR 499

Query: 314 QGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
            G  +H +  RN    + + +G  L+DMY+K G +D A  VF++MK++ V +W +++ G 
Sbjct: 500 LGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGY 559

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
            MHGR ++A+ LF +MQ+     D ITF  VL AC+H+GM+D+G+     M + +GI P 
Sbjct: 560 GMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPG 619

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
            EHY C+VDLLGRAG L EA E+I +M MEP A VW ALL A R H  +E GE     L 
Sbjct: 620 AEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLT 679

Query: 493 EMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           E+  +N              RR  DVA++R LMK  GI+  PG S I        F  GD
Sbjct: 680 ELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGD 739

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHP+ ++IY +L  +I+++K  GY P +S  L D+D+EEK      HSEKLA+A+G + 
Sbjct: 740 RSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILT 799

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T PG  IR+ KNLR+C DCHSA   IS +   +I++RD  R+HHF+ G CSC  +W
Sbjct: 800 TAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 233/526 (44%), Gaps = 99/526 (18%)

Query: 50  KQAHAVILKSGHFQD-HYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           K AH  I   G  +   Y  G  ++C A++   +    L   +S     VF WN+++R  
Sbjct: 47  KLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHS----TVFWWNALIRRS 102

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           ++       +  Y +M  +   P+ +T+P V KAC    + + G  VHA V  NGL  +V
Sbjct: 103 VKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNV 162

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSK---SDVICWNALIDGYLKCGD----------- 214
            + +S + MY   G ++ A Q+ D+  +    D++ WN+++  Y++ G            
Sbjct: 163 FICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM 222

Query: 215 ------------------IEGAKELFKSTKDKNTGSY-------------NAMISGFARF 243
                             +     +F     K    +             NA++S +A+ 
Sbjct: 223 GNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKC 282

Query: 244 GRFEEARKLFNEMNDK-----------------------------------DEITWSAII 268
            +  EA K+F  +  K                                   D ITWSA+I
Sbjct: 283 SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVI 342

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            GY + G+  EAL+VF +MQ   ++P    L+ +L+ CAS+GAL  G   H +V +N + 
Sbjct: 343 AGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILN 402

Query: 329 V-------DAVLGTALVDMYAKCGRLDMAWKVFEDM--KMKEVFTWNAMIGGLAMHGRAD 379
           +       D ++   L+DMYAKC    +A  +F+ +  K K V TW  MIGG A HG A+
Sbjct: 403 LNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEAN 462

Query: 380 DAIELFFKM--QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
           DA++LF ++  Q+  ++P+  T +C L ACA  G +  G Q   Y  +    + EV + G
Sbjct: 463 DALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNEN-ESEVLYVG 521

Query: 438 -CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            C++D+  ++G +  A  V  +M +  N   W +L+     HG  E
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGE 566


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 331/590 (56%), Gaps = 49/590 (8%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFK 141
           FELA   F  +   ++  WNS++    +       ++++S+M+   S KP+ FT  ++  
Sbjct: 224 FELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILS 283

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+  E    G Q+HA++++         ++SG                           
Sbjct: 284 ACANLEKLNIGKQIHAYILR------AETETSGA-------------------------V 312

Query: 202 WNALIDGYLKCGDIEGAKELFK--STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            NALI  Y K G +E A+ + +   T + N  ++ +++ G+ + G  + AR++FN++ D+
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D + W+A+I GY ++G + +ALE+F  M  +  +P  + L+ +L+  +SL  L+ G  IH
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-DMKMKEVFTWNAMIGGLAMHGRA 378
               +        +  AL+ MYAK G +++A +VF+     KE+ +W +MI  LA HG  
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLG 492

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +AI LF +M    M+PD IT+  VLSAC H G++++G +    M +++ I+P + HY C
Sbjct: 493 KEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DL GRAG L EA   I SMP+EP+   W +LL +C+ H   +  +   + LL ++P N
Sbjct: 553 MIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGN 612

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + ++ A+ RKLMK+RG++   G S I +   +H F   D  HPQ 
Sbjct: 613 SGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQK 672

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
            EIY ++ +I E++K  G+ P++  VL D++EE KE   KYHSEKLAIAFG +NT     
Sbjct: 673 DEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTA 732

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R++KNLRVC DCHSA K ISK+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 733 LRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 195/423 (46%), Gaps = 55/423 (13%)

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           H+  + +++   F   +   QI+  G    V   N L+  Y K G +  A  +F     K
Sbjct: 15  HILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLK 74

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +T S+N +ISG+A+ G FE +R+L  EM D D ++W+AII GY + G +  A+ +F +M 
Sbjct: 75  STFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC---- 344
            +++ P +F +S VL++CA+   LD G  IH  V +  +     + T+L++MYAKC    
Sbjct: 135 SERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194

Query: 345 ---------------------------GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
                                      G+ ++A   FE M  +++ +WN+MI G +  G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 378 ADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
             +A+ +F KM  E  ++PD  T A +LSACA+   ++ G Q   Y+     +  E E  
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYI-----LRAETETS 309

Query: 437 GCI----VDLLGRAGYLAEAEEVIS-SMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           G +    + +  ++G +  A  ++  +     N   + +LL    K G V+    +   L
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 492 LEME-----------PQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVNGVIHEFRTGD 538
            + +            QN   +D  ++ +LM   G + N  +  +M+ V+  +     G 
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 539 GSH 541
             H
Sbjct: 430 QIH 432



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 197/445 (44%), Gaps = 70/445 (15%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           TL+  +A     NFE++ ++   +   +   W +++    +       I ++++M+    
Sbjct: 81  TLISGYAKQ--GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV 138

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P++FT   V  +C+  +    G ++H+ VVK GL   V V +S + MYA  G    A+ 
Sbjct: 139 PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           + D  +  ++  WNALI  Y++ G  E A   F+   D++  S+N+MISG+         
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY--------- 249

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
                                 ++ GY  EAL +F++M  +  +KP  F L+ +L+ACA+
Sbjct: 250 ----------------------SQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACAN 287

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM------------------- 349
           L  L+ G  IH ++ R        +G AL+ MYAK G +++                   
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347

Query: 350 --------------AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
                         A ++F  ++ ++V  W AMI G   +G  +DA+ELF  M  E   P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407

Query: 396 DRITFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           +  T A +LS  +   +++ G Q   + ++      P V +   ++ +  + G +  A+ 
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKR 465

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V      +     W +++ A  +HG
Sbjct: 466 VFDLPNGKKEIVSWTSMIMALAQHG 490



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 36/279 (12%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWN 102
           T  +H KQ HA  +K+G      V+  L+  +A +   N  +A +VF+  + K  +  W 
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT--GNINVAKRVFDLPNGKKEIVSWT 480

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           S++ A  +H      I+L+  M+ V  KP+  TY  V  AC+     ++G + +      
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYY------ 534

Query: 163 GLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG--YLKC 212
            +  +VH     +  YAC        G + +A   ++    + D I W +L+      K 
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 213 GDI-EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA---RKLFNEMNDKDE--ITWSA 266
            D+ + A E        N+G+Y A+ + ++  G++E A   RKL  +   + E  I+W  
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH 654

Query: 267 I-----------IDGYTKDGYYKEALEVFNEMQRDKIKP 294
           I           +    KD  YK   E++ E+++    P
Sbjct: 655 IKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIP 693


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/624 (35%), Positives = 343/624 (54%), Gaps = 56/624 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H+ I+K+G  +   +S TL+  +          AL++F+ +   +   W S+L A   
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGL--IPQALQLFDEMPNRDHVSWASILTA--- 78

Query: 111 HNE---PWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           HN+   P R +S+ + M   D  +P+ F +  + +ACS     + G QVHA  + +  C 
Sbjct: 79  HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCD 138

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D  VKSS                               LID Y KCG  + A+ +F S  
Sbjct: 139 DEVVKSS-------------------------------LIDMYTKCGQPDDARAVFDSIL 167

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            KN+ S+ +MISG+AR GR  EA  LF +   ++  +W+A+I G  + G+   +  +FNE
Sbjct: 168 FKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNE 227

Query: 287 MQRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           M+R+ I      VLS V+  CA+L  L+ G  IH  V          +  ALVDMYAKC 
Sbjct: 228 MRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCS 287

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A  +F  M  K+V +W ++I G A HG+A++A+ L+ +M   +++P+ +TF  +L 
Sbjct: 288 DILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLY 347

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG++ RG +    M   Y I+P ++HY C++DLL R+G+L EAE ++  +P +P+ 
Sbjct: 348 ACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDE 407

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLM 511
             W +LL AC +H  +E G R+   +L+++P++                   V+K+RKLM
Sbjct: 408 PTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLM 467

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
               ++  PG S ID       F  G+   HP   EI  +LK +  +++  GY PN+S V
Sbjct: 468 SSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFV 527

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L+DI+++EKE    +HSE+LA+A+G +   PG  IR++KNLR+C DCH+  K IS + KR
Sbjct: 528 LYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKR 587

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +I+VRD  RYHHF+ GKCSCNDFW
Sbjct: 588 EIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA   +      +H  + +      ++L   L+D+Y KCG +  A ++F++M  ++ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 363 FTWNAMIGGLAMHGRA---DDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            +W ++   L  H +A      + +   M   + ++PD   FAC++ AC+  G +  G Q
Sbjct: 70  VSWASI---LTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQ 126

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
                   +  D EV     ++D+  + G   +A  V  S+  + N+  W +++    + 
Sbjct: 127 VHARFMLSFFCDDEVVK-SSLIDMYTKCGQPDDARAVFDSILFK-NSVSWTSMISGYARS 184

Query: 479 G 479
           G
Sbjct: 185 G 185


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 350/657 (53%), Gaps = 55/657 (8%)

Query: 51   QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            Q H+  +K+G   D  + G+L+  +  S+ ++ E A K F +    N+ +WN +L A  +
Sbjct: 383  QLHSHAIKAGMSADIILEGSLLDLY--SKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 111  HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
             +       ++ +M      PN+FTYP++ + C+   A   G Q+H HV+K G   +V+V
Sbjct: 441  LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 171  KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-- 228
             S  I MYA +G +  A +IL    + DV+ W A+I GY++      A +LF+  + +  
Sbjct: 501  CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 229  ---NTG-----------------------SY-----------NAMISGFARFGRFEEARK 251
               N G                       SY           NA+IS +AR GR +EA  
Sbjct: 561  QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 252  LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
             F ++ DK+ I+W++++ G  + GY++EAL+VF  M R + +   F     ++A ASL  
Sbjct: 621  AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 312  LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
            + QG  IH  V +     +  +  +L+ +YAK G +  AW+ F DM  + V +WNAMI G
Sbjct: 681  IKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITG 740

Query: 372  LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             + HG   +A+ LF +M+   + P+ +TF  VLSAC+H G++  GL     M +++ + P
Sbjct: 741  YSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 432  EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            + EHY C+VDLLGRAG L  A E I  MP+  +A +W  LL AC  H  +E GER    L
Sbjct: 801  KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHL 860

Query: 492  LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            LE+EP++              R+       RKLMK+RG+K  PG S I+V   +H F  G
Sbjct: 861  LELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAG 920

Query: 538  DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
            D  HP   +IY  +  +  +    GY  +S  +L + ++ +K+     HSEKLAIAFG +
Sbjct: 921  DKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLL 980

Query: 598  NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +      IRV+KNLRVC DCH+  K +SK+  R IIVRD  R+HHF  G CSC DFW
Sbjct: 981  SLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 256/562 (45%), Gaps = 76/562 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A+KVF+     +VF WN ++   +     ++V  L+  M+     PN +T+  V KAC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 146 TEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            +     V QVH+     G      V +  I +Y+  G +  A+++ +     D++ W A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 205 LIDGYLKCGDIEGAKELF--------------------KSTKDK---------------- 228
           +I G  + G  E A  LF                     STK +                
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 229 -NTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            ++ +Y  N +++ ++R  +   A ++F+ MN +D ++++++I G  + G+   ALE+F 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +MQRD +KP    ++ +L+ACAS+GAL +G+ +H H  +  +  D +L  +L+D+Y+KC 
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++ A K F   + + +  WN M+          D+ E+F +MQ E M P++ T+  +L 
Sbjct: 412 DVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILR 471

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
            C   G +  G Q  T++ +  G    V     ++D+  + G LA A  ++  +P E + 
Sbjct: 472 TCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDV 529

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV---------AKMRKLMKERGI 516
             W A++    +H    F E L ++  EME +  + D++         A +R L + + I
Sbjct: 530 VSWTAMIAGYVQHD--MFSEAL-QLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 517 KTNP-----GSSMIDVNGVIHEF-RTGDGSHPQVKEIYLMLKKIIEK-----------LK 559
                    G+ +   N +I  + R G     +++E YL  +KI +K           L 
Sbjct: 587 HAQSYAAGFGADLSINNALISLYARCG-----RIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 560 MEGYSPNSSQVLFDIDEEEKET 581
             GY   + QV   +   E E 
Sbjct: 642 QSGYFEEALQVFVRMLRTEAEV 663



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 223/469 (47%), Gaps = 43/469 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H +++K G   + YV   LV  ++ SR      A ++F++++  +   +NS++   +
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSR--KLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     R + L+++M     KP+  T  ++  AC+   A  +G+Q+H+H +K G+  D+ 
Sbjct: 339 QQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADII 398

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           ++ S + +Y+    V  A +        +++ WN ++  Y +  ++  + E+F+  + + 
Sbjct: 399 LEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                   + +I  +A++G+   A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++   + + D ++W+A+I GY +   + EAL++F EM+   I+      +  ++ACA + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL QG  IH          D  +  AL+ +YA+CGR+  A+  FE +  K   +WN+++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA  G  ++A+++F +M R +   +  T+   +SA A    I +G Q +  M    G D
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYD 697

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            E E    ++ L  ++G +++A    + M  E N   W A++    +HG
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHG 745



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 213/483 (44%), Gaps = 55/483 (11%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           ++ ++KQ H+     G      V+  L+  ++ + +   E A KVFN +   ++  W ++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAM 232

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +    ++      I L+ +M   +  P  +   +V  A +  +  + G Q+H  V+K G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF-K 223
             + +V +  + +Y+    +  A +I    +  D + +N+LI G ++ G  + A ELF K
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 224 STKD---------------------------------KNTGSYNAMISG-----FARFGR 245
             +D                                 K   S + ++ G     +++   
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCAD 412

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E A K F     ++ + W+ ++  Y +     ++ E+F +MQ + + P +F    +L  
Sbjct: 413 VETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C SLGAL  G  IH HV +    ++  + + L+DMYAK G+L +A ++   +   +V +W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            AMI G   H    +A++LF +M+   ++ D I FA  +SACA       G++AL   QQ
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA-------GIRALRQGQQ 585

Query: 426 MY------GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           ++      G   ++     ++ L  R G + EA      +  + N   W +L+    + G
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSG 644

Query: 480 EVE 482
             E
Sbjct: 645 YFE 647



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 10/309 (3%)

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFE 247
           + G +S+   +  L++G L  G +     L     KS  D      ++++  + R G   
Sbjct: 51  ERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQH 110

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            A K+F+E +++   +W+ +I  +       +   +F  M  + I P  +  + VL AC 
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV 170

Query: 308 SLG-ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
               A +    +H            ++   L+D+Y+K G ++ A KVF  + MK++ TW 
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWV 230

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI GL+ +G  ++AI LF  M   ++ P     + VLSA     + + G Q L  +   
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIK 289

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           +G   E      +V L  R+  L  AE + S+M    +   + +L+    + G   F +R
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQG---FSDR 345

Query: 487 LGKILLEME 495
             ++  +M+
Sbjct: 346 ALELFTKMQ 354



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 120/272 (44%), Gaps = 13/272 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA    +G   D  ++  L+  +A  R    + A   F  +   N   WNS++    
Sbjct: 584 QQIHAQSYAAGFGADLSINNALISLYA--RCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + ++  M+  +++ N FTY +   A +     K+G Q+H+ V+K G   +  
Sbjct: 642 QSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSERE 701

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           V +S I +YA  G ++ A +  +D S+ +VI WNA+I GY + G    A  LF+  K   
Sbjct: 702 VSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG 761

Query: 228 --KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  ++  ++S  +  G  +E    F  M    ++      +  ++D   + G    A
Sbjct: 762 IMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRA 821

Query: 281 LEVFNEM--QRDKIKPRKFVLSCVLAACASLG 310
           +E   EM    D +  R  + +CV+     +G
Sbjct: 822 MEYIKEMPIPADAMIWRTLLSACVIHKNIEIG 853



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +++ N M+   ++        +L  C + G+L + + +H  + ++    + +L  +LVD 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y + G    A KVF++   + VF+WN MI              LF +M  E + P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQM------YGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           A VL AC    +      A  Y++Q+      YG D        ++DL  + GY+  A++
Sbjct: 163 AGVLKACVGGDI------AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V + + M+ +   W A++    ++G
Sbjct: 217 VFNCICMK-DIVTWVAMISGLSQNG 240


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 334/588 (56%), Gaps = 49/588 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           AL VF++V  P+ F+  ++LR       P   +RV S      G +     F + T+ K+
Sbjct: 91  ALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKS 150

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            + + +                                      A  +L  G        
Sbjct: 151 ATASRSLPAAAA------------------------------AHAVSVLVGGFDRHRFVE 180

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N+LI  Y+ CGD+  A+++F    +K+  S+ +++  + R G    A ++F     KD +
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMV 240

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
            W+A++ GY ++    +ALEVF+ M    +   +  L+  ++ACA LGAL +  W+ +  
Sbjct: 241 AWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIA 300

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +R     + V+G+ LVDMYAKCG +D A KVF  M+ K V+T+++MI GLA HGRA +AI
Sbjct: 301 ERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAI 360

Query: 383 ELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
            LF +M  R  + P+ +TF  VL+AC+HAGM+  G      M+  YGI P  +HY C+VD
Sbjct: 361 ALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVD 420

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--- 498
           LLGRAG + EA +++ SM + P+  VW ALLGACR HG+ E  + + + L ++EP++   
Sbjct: 421 LLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGN 480

Query: 499 -----------RRCDDVAKMRKLMKERGIKTNPGSSMID-VNGVIHEFRTGDGSHPQVKE 546
                       + ++V+K+R LM+++ +K +P  S+ +  +G++H+F  GD +HP+  E
Sbjct: 481 YVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHE 540

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I   L +++ KLK+EGY P  S +++D+++EEKE     HSEKLA++FG +    G TIR
Sbjct: 541 IKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIR 600

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +IKNLR+C+DCH   +L+S+V   +IIVRD +R+HHF+NG+CSC  FW
Sbjct: 601 IIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 122/323 (37%), Gaps = 66/323 (20%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A +R  +   A +VF      ++  W +++    ++  P + + ++  M  +    ++ +
Sbjct: 217 AYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVS 276

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
                 AC+   A +    V     + G   +V V S  + MYA  G +++A ++     
Sbjct: 277 LTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKV----- 331

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
                                     F   ++KN  +Y++MI+G A  GR  EA  LF E
Sbjct: 332 --------------------------FYGMQEKNVYTYSSMIAGLASHGRASEAIALFKE 365

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M                              + R  ++P       VL AC+  G + +G
Sbjct: 366 M------------------------------VNRANVEPNHVTFIGVLTACSHAGMVGEG 395

Query: 316 IWIHDHVK-RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLA 373
            +    +K +  I   A     +VD+  + G +D A  +   M +      W A++G   
Sbjct: 396 RYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACR 455

Query: 374 MHGRADDA---IELFFKMQREKM 393
           +HG+++ A    E  FK++ E +
Sbjct: 456 IHGKSEIAKVVAEHLFKLEPESI 478


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/689 (33%), Positives = 354/689 (51%), Gaps = 86/689 (12%)

Query: 50  KQAHAVILKSGHF---QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP------NVFV 100
           ++AHA  LK G     ++ +    L+  +A  R    + A  +F +          +V  
Sbjct: 192 REAHAFALKRGFLDEGRERFPFNALLSMYA--RLGLVDDAQSLFRTTAAAFSPGGGDVVT 249

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+++   ++       + +  +MV +  +P+  T+ +   ACS  E    G ++HA V+
Sbjct: 250 WNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 161 KNG-LCGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEG 217
           K+  L  +  V S+ + MYA    V  AR++ D        +  WNA+I GY + G  E 
Sbjct: 310 KDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE 369

Query: 218 AKELF----------------------------------------KSTKDKNTGSYNAMI 237
           A ELF                                        K     N    NA++
Sbjct: 370 ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALM 429

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ--------- 288
             +AR G  + AR++F  ++ +D ++W+ +I G    G+  EA ++  EMQ         
Sbjct: 430 DMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSS 489

Query: 289 -------RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
                    +  P    L  +L  CA+L A  +G  IH +  R+++  D  +G+ALVDMY
Sbjct: 490 STTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMY 549

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITF 400
           AKCG L  +  VF+ +  + V TWN +I    MHG  D+A+ LF +M    +  P+ +TF
Sbjct: 550 AKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTF 609

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM- 459
              L+AC+H+G++DRGL+    M++ +G+ P  + + C+VD+LGRAG L EA  +I+SM 
Sbjct: 610 IAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSME 669

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR-----C---------DDVA 505
           P E   + W +LLGACR H  VE GE   + L E+EP         C         D   
Sbjct: 670 PGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSV 729

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
            +R  M+ +G+   PG S I+++G IH F  G+ SHP   E++  +  + E+++ EGY+P
Sbjct: 730 AVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAP 789

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++S VL D+DE+EK    +YHSEKLAIAFG +   PGA IRV KNLRVC DCH A K +S
Sbjct: 790 DTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMS 849

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K+  RDI++RD  R+HHFR+G CSC D+W
Sbjct: 850 KMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 18/256 (7%)

Query: 234 NAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQRD- 290
           NA+++ +AR G  + A  LF       +D ++++++I        ++ AL+   +M  + 
Sbjct: 104 NALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEG 163

Query: 291 KIKPRKFVLSCVLAACASLGALDQ---GIWIHDHVKRNSICVDA---VLGTALVDMYAKC 344
           +     F L  VL AC+ L   D    G   H    +     +        AL+ MYA+ 
Sbjct: 164 RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARL 223

Query: 345 GRLDMAWKVFEDMKMK------EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           G +D A  +F            +V TWN MI  L   GR  +A+E+ + M    +RPD +
Sbjct: 224 GLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGV 283

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TFA  L AC+   M+  G +    + +   +         +VD+      +A A  V   
Sbjct: 284 TFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDM 343

Query: 459 MPMEPN--AAVWEALL 472
           +P EP+    +W A++
Sbjct: 344 VP-EPSRQLGMWNAMI 358


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 289/446 (64%), Gaps = 19/446 (4%)

Query: 227 DKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
           ++N G  N M+  +A+ G    E ARK+F+ M ++D ++W+++I  Y ++G   EA+ ++
Sbjct: 84  ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 142

Query: 285 NEMQR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++M      IK     LS VL ACA  GA+  G  IH+ V R  +  +  +GT++VDMY+
Sbjct: 143 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYS 202

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCGR++MA + F  +K K + +W+AMI G  MHGR  +A+E+F +M+R  +RP+ ITF  
Sbjct: 203 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 262

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL+AC+HAG++D G      M+Q +GI+  VEHYGC+VDLLGRAG L EA  +I  M ++
Sbjct: 263 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 322

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           P+AA+W ALL ACR H  VE  E   K L E++  N                  DV ++R
Sbjct: 323 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIR 382

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
            L+K R I+  PG S  ++ G I+ F  GD SHPQ  EIY  L+K++E+++  GY PN+ 
Sbjct: 383 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 442

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL D+DEEEKE+A + HSEKLA+AF  +N+ P + I +IKNLRVC DCH+A K I+K+ 
Sbjct: 443 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 502

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+II+RD  R+HHF++G CSC D+W
Sbjct: 503 EREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 67/327 (20%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA+I K G  ++  V  T++  +A     + E+A KVF+++ + +V  WNS++    ++ 
Sbjct: 75  HALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNG 133

Query: 113 EPWRVISLYSEM--VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                I LYS+M  VG   K N      V  AC+   A + G  +H  VV+ GL  +V+V
Sbjct: 134 MSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYV 193

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S                               ++D Y KCG +E A   F+  K+KN 
Sbjct: 194 GTS-------------------------------IVDMYSKCGRVEMASRAFRKIKEKNI 222

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S++AMI+G+   GR +E                               ALE+F EM+R 
Sbjct: 223 LSWSAMITGYGMHGRGQE-------------------------------ALEIFTEMKRS 251

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDM 349
            ++P       VLAAC+  G LD+G + ++ +K+   I         +VD+  + G LD 
Sbjct: 252 GLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDE 311

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           A+ + ++MK+K +   W A++    +H
Sbjct: 312 AYSLIKEMKVKPDAAIWGALLSACRIH 338



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 12/259 (4%)

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           +AR+ F+E+ D + +  +A+  GY ++     +LE+F  M            + ++A  A
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 308 SLGALDQGIW--IHDHVKRNSICVDAVLGTALVDMYAKCGR--LDMAWKVFEDMKMKEVF 363
           S    D+G+   +H  + +     +A +   ++D YAK G   L++A KVF+ M+ ++V 
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVV 120

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQR--EKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +WN+MI   A +G + +AI L+ KM      ++ + +  + VL ACAHAG I  G     
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            + +M G++  V     IVD+  + G +  A      +  E N   W A++     HG  
Sbjct: 181 QVVRM-GLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGR- 237

Query: 482 EFGERLGKILLEMEPQNRR 500
             G+   +I  EM+    R
Sbjct: 238 --GQEALEIFTEMKRSGLR 254


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 317/536 (59%), Gaps = 26/536 (4%)

Query: 20  SATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA-NS 78
           S T +P   F+++            S   ++QAHA +LK+G F D + +  LV   A N 
Sbjct: 6   STTPVPILSFTERA----------KSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNP 55

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
                  A  + N +  PN F  NSV+RA    + P   ++++ EM+     P+K+++  
Sbjct: 56  EPKTVSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTF 115

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V KAC+     +EG Q+H   +K+ L  DV V+++ I +Y   G    AR++LD     D
Sbjct: 116 VLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRD 175

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + WN+L+  YL  G +E A+ LF   +++N  S+N MISG+A  G  +EAR++F+ M  
Sbjct: 176 AVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPV 235

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIW 317
           KD ++W+A++  Y   G Y E LEVFN M  D   +P  F L  VL+ACASLG+L QG W
Sbjct: 236 KDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEW 295

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H ++ ++ I ++  + TALVDMY+KCG++D A +VF D   ++V TWN++I GL++HG 
Sbjct: 296 VHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGL 355

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
             DA+E+F +M  E  +P+ ITF  VLSAC H G++D+  +    M  +YGI+P +EHYG
Sbjct: 356 GKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYG 415

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           C+VDLLGR G   EAEE+++ +P +  + + E+LLGAC++ G++E  ER+   LLE  P+
Sbjct: 416 CMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPR 475

Query: 498 NR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
                           R D+  ++R  M+   +K NPG SMI+V+GV+HEF  G+G
Sbjct: 476 ESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAGEG 531



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 169/445 (37%), Gaps = 117/445 (26%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H + +KS    D +V  TL+  +  S +  FE+A KV + +   +   WNS+L A L
Sbjct: 130 RQIHGLFMKSDLVTDVFVENTLINVYGRSGY--FEIARKVLDRMPVRDAVSWNSLLSAYL 187

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +        +L+ EM   + +   F                                   
Sbjct: 188 DKGLVEEARALFDEMEERNVESWNFM---------------------------------- 213

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                I  YA  G V +AR++ D     DV+ WNA++  Y   G      E+F    D +
Sbjct: 214 -----ISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDS 268

Query: 230 T------------------GSYN----------------------AMISGFARFGRFEEA 249
                              GS +                      A++  +++ G+ ++A
Sbjct: 269 AERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKA 328

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            ++F + + +D  TW++II G +  G  K+ALE+F+EM  +  KP       VL+AC  +
Sbjct: 329 LEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHV 388

Query: 310 GALDQGIWIHDHVKR-------------------------------NSICVD--AVLGTA 336
           G LDQ   + + +                                 N +  D  ++L  +
Sbjct: 389 GLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLES 448

Query: 337 LVDMYAKCGRLDMAWKVFEDM---KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           L+    + G+L+ A ++   +     +E   +  M    A HGR D+A+E+  KM+ E++
Sbjct: 449 LLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERV 508

Query: 394 RPDRITFACVLSACAHAGMIDRGLQ 418
           + +       +    H  +   GL+
Sbjct: 509 KKNPGCSMIEVDGVVHEFLAGEGLR 533


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/435 (44%), Positives = 284/435 (65%), Gaps = 15/435 (3%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           A++S +A+ G    ARK+F++M +K  + W+++I GY ++G+ KEA+E+F  MQ   +KP
Sbjct: 158 ALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKP 217

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
                  +L+ACA +GA+  G W+H+++ RN   ++ VLGTAL++MY++CG +  A +VF
Sbjct: 218 DSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVF 277

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           + M+ K +  W AMI G  MHG    AIELF +M  +  RP+ +TF  VLSACAHAG++D
Sbjct: 278 DSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVD 337

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSMPMEPNAAVWEALLG 473
            G Q  T M+Q YG+ P VEH  C+VD+LGRAG+L EA + I ++ P EP  AVW A+LG
Sbjct: 338 EGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLG 397

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           AC+ H   + G  + + LL +EP+N               R D V K+R +M    +K  
Sbjct: 398 ACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKE 457

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
            G S IDV+  ++ F  GD SHP+  +IYL L +++ + +  GY P S  V+ +++EEE+
Sbjct: 458 VGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEER 517

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E A +YHSEKLAIAFG + T  G  IR++KNLR+CEDCH+A K IS +  R+I VRDR+R
Sbjct: 518 EYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLR 577

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 578 FHHFKDGSCSCQDYW 592



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 176/378 (46%), Gaps = 43/378 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+Q HA I+ +G  +   +   L+   A +  S      ++F S+ KP+ F+++S++   
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLS-FAYAAASPISYTRRLFFSIPKPDTFLFHSLITLT 93

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            + + P   +  Y  M+  +   + +T+  V K+ +   A   G  +H HV   G   D 
Sbjct: 94  SKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDA 153

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
           +V+++ +  YA  G V  AR++ D   +  V+ WN++I GY + G  + A ELF      
Sbjct: 154 YVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDL 213

Query: 223 ---------------------------------KSTKDKNTGSYNAMISGFARFGRFEEA 249
                                            ++  D N     A+++ ++R G   +A
Sbjct: 214 GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKA 273

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R++F+ M +K+ + W+A+I GY   G+  +A+E+FNEM  D  +P       VL+ACA  
Sbjct: 274 REVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHA 333

Query: 310 GALDQGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWN 366
           G +D+G  I   +K+    V +V     +VDM  + G L+ A++  ++   KE     W 
Sbjct: 334 GLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWT 393

Query: 367 AMIGGLAMHGRADDAIEL 384
           AM+G   MH   D  +E+
Sbjct: 394 AMLGACKMHKNFDLGVEV 411



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R+LF  +   D   + ++I   +K  + +E+L  +  M    I    +  S V+ + A L
Sbjct: 72  RRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADL 131

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            A   G  IH HV      +DA +  ALV  YAK G + +A KVF+ M  K V  WN+MI
Sbjct: 132 TAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMI 191

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G   +G   +A+ELFF MQ   ++PD  TF  +LSACA  G I  G     Y+ +    
Sbjct: 192 SGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARN-CF 250

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           D  V     ++++  R G +++A EV  SM  E N   W A++     HG    G +  +
Sbjct: 251 DLNVVLGTALMNMYSRCGNVSKAREVFDSME-EKNIVAWTAMISGYGMHGH---GSQAIE 306

Query: 490 ILLEMEPQNRRCDDV 504
           +  EM     R ++V
Sbjct: 307 LFNEMSFDGPRPNNV 321



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
            NI +S ++   +  I ++   T++   +  H  +   G+  D YV   LV  +A S   
Sbjct: 112 ANISSSNYTFSAV--IKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKS--G 167

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           +  +A KVF+ + +  V  WNS++    ++      + L+  M  +  KP+  T+ ++  
Sbjct: 168 HVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLS 227

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+   A   G  VH ++ +N    +V + ++ + MY+  G V+KAR++ D   + +++ 
Sbjct: 228 ACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVA 287

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           W A+I GY   G    A ELF          N  ++ A++S  A  G  +E R++F  M 
Sbjct: 288 WTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMK 347

Query: 258 DKDEITWSA-----IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
            +  +  S      ++D   + G+  EA +          +P   V + +L AC      
Sbjct: 348 QEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPK--EPAPAVWTAMLGACKMHKNF 405

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           D G+ + +H+       +      L ++YA  GR+D   K+
Sbjct: 406 DLGVEVAEHLLSIE-PENPGHYVMLSNIYALAGRMDRVEKI 445


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/657 (34%), Positives = 339/657 (51%), Gaps = 55/657 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA ILKSG   D YV+  LV  +   RF     A  +F ++   ++  WNS+L   ++
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYV--RFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQ 238

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      +  + ++   D KP++ +  ++  A         G ++HA+ +KNG   ++ V
Sbjct: 239 NGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILV 298

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----- 225
            ++ I MYA   C++   +  D  +  D+I W     GY +      A EL +       
Sbjct: 299 GNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 226 ---------------------KDKNTGSY------------NAMISGFARFGRFEEARKL 252
                                K K    Y            N +I  +   G  + A ++
Sbjct: 359 DVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRI 418

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F  +  KD ++W+++I  Y  +G   +ALEVF+ M+   ++P    L  +L+A  SL  L
Sbjct: 419 FESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTL 478

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
            +G  IH  + R    ++  +   LVDMYA+CG ++ A+K+F   K + +  W AMI   
Sbjct: 479 KKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAY 538

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
            MHG  + A+ELF +M+ EK+ PD ITF  +L AC+H+G+++ G   L  M+  Y ++P 
Sbjct: 539 GMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPW 598

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
            EHY C+VDLLGR   L EA +++ SM  EP   VW ALLGACR H   E GE   + LL
Sbjct: 599 PEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLL 658

Query: 493 EME--------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           E++                N R  DV ++R  MK  G+  NPG S I+V   IH F + D
Sbjct: 659 ELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRD 718

Query: 539 GSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
             HP+  +IY  L ++ EKLK E GY   +  VL ++ EEEK      HSE+LAIA+G +
Sbjct: 719 KLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLL 778

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            T  G  IRV KNLRVC DCHS   L+S+ F+R++IVRD  R+HHF++G CSC DFW
Sbjct: 779 ATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 239/519 (46%), Gaps = 51/519 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN-VFVWNSVLRACL 109
           + H + +K G     +V  +LV  +A  + ++   A K+F+ ++  N V  WNS++ A  
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYA--KCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      + L+SEM+      N +T+    +AC  +   K G+Q+HA ++K+G   DV+
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ + MY  FG + +A  I  +    D++ WN+++ G+++ G    A E F       
Sbjct: 197 VANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD 256

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+  D N    N +I  +A+        
Sbjct: 257 LKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGG 316

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           + F+ M  KD I+W+    GY ++  Y +ALE+  ++Q + +     ++  +L AC  L 
Sbjct: 317 RAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLN 376

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L +   IH +  R  +  D VL   ++D+Y +CG +D A ++FE ++ K+V +W +MI 
Sbjct: 377 CLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMIS 435

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
               +G A+ A+E+F  M+   + PD +T   +LSA      + +G +   ++ +  G  
Sbjct: 436 CYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK-GFI 494

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            E      +VD+  R G + +A ++ +      N  +W A++ A   HG   +GE   ++
Sbjct: 495 LEGSISNTLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMHG---YGEAAVEL 550

Query: 491 LLEMEPQNRRCDDVAKMRKLM--KERGIKTNPGSSMIDV 527
            + M+ +    D +  +  L      G+  N G S +++
Sbjct: 551 FMRMKDEKIIPDHITFLALLYACSHSGL-VNEGKSFLEI 588



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 205/437 (46%), Gaps = 58/437 (13%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ + + ++F WN+++   + + E    + +Y EM  +    + +T+P + KAC I E 
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG-SKSDVICWNALID 207
              G ++H   +K G    V V +S + +YA    +N AR++ D    ++DV+ WN++I 
Sbjct: 74  LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIIS 133

Query: 208 GYLKCGDIEGA----KELFKSTKDKNTGSY------------------------------ 233
            Y   G    A     E+ K+    NT ++                              
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                NA+++ + RFG+  EA  +F  +  KD +TW++++ G+ ++G Y EALE F ++Q
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              +KP +  +  ++ A   LG L  G  IH +  +N    + ++G  L+DMYAKC  + 
Sbjct: 254 NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMS 313

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
              + F+ M  K++ +W     G A +     A+EL  ++Q E M  D      +L AC 
Sbjct: 314 YGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC- 372

Query: 409 HAGMIDRGLQALTYMQQMYGI-------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
                 RGL  L  +++++G        DP +++   I+D+ G  G +  A  +  S+  
Sbjct: 373 ------RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIEC 424

Query: 462 EPNAAVWEALLGACRKH 478
           + +   W +++ +C  H
Sbjct: 425 K-DVVSWTSMI-SCYVH 439



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 141/309 (45%), Gaps = 41/309 (13%)

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK---------- 226
           MY   G V  A  I D  S+  +  WNA++ GY+  G+  GA E+++  +          
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 227 -----------------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
                                        D      N++++ +A+      ARKLF+ M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 258 DK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
            + D ++W++II  Y+ +G   EAL +F+EM +  +    +  +  L AC     +  G+
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  + ++   +D  +  ALV MY + G++  A  +F +++ K++ TWN+M+ G   +G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +A+E F+ +Q   ++PD+++   ++ A    G +  G +   Y  +  G D  +   
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK-NGFDSNILVG 299

Query: 437 GCIVDLLGR 445
             ++D+  +
Sbjct: 300 NTLIDMYAK 308



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 3/241 (1%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G   +A  +F++M+++   TW+A++ GY  +G    ALE++ EM+   +    +  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L AC  +  L  G  IH    +        +  +LV +YAKC  ++ A K+F+ M +
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 360 K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           + +V +WN++I   + +G   +A+ LF +M +  +  +  TFA  L AC  +  I  G+Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               + +  G   +V     +V +  R G + EA  +  ++    +   W ++L    ++
Sbjct: 182 IHAAILKS-GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSMLTGFIQN 239

Query: 479 G 479
           G
Sbjct: 240 G 240



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 170/409 (41%), Gaps = 68/409 (16%)

Query: 14  LKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           LKP+++S  +I  +      +L+             K+ HA  +K+G   +  V  TL+ 
Sbjct: 257 LKPDQVSIISIIVASGRLGYLLN------------GKEIHAYAIKNGFDSNILVGNTLID 304

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS--EMVGVDSKP 131
            +A     ++    + F+ +   ++  W +      ++    + + L    +M G+D   
Sbjct: 305 MYAKCCCMSY--GGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDA 362

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
                 ++  AC       +  ++H + ++ GL  D  ++++ I +Y   G ++ A +I 
Sbjct: 363 TMI--GSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIF 419

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT--------------------- 230
           +     DV+ W ++I  Y+  G    A E+F S K+                        
Sbjct: 420 ESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLK 479

Query: 231 -----------------GSY-NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                            GS  N ++  +AR G  E+A K+F    +++ I W+A+I  Y 
Sbjct: 480 KGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYG 539

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
             GY + A+E+F  M+ +KI P       +L AC+  G +++G    + +K    C   +
Sbjct: 540 MHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMK----CEYQL 595

Query: 333 LG-----TALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMH 375
                  T LVD+  +   L+ A+++ + M+ +     W A++G   +H
Sbjct: 596 EPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIH 644



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG +  A  +F+ M  + +FTWNAM+GG   +G A  A+E++ +M+   +  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L AC     +  G + +  +   YG D  V     +V L  +   +  A ++   M
Sbjct: 61  FPVLLKACGIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 460 PMEPNAAVWEALLGACRKHG 479
            +  +   W +++ A   +G
Sbjct: 120 YVRNDVVSWNSIISAYSGNG 139


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 327/588 (55%), Gaps = 47/588 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++ + +  P    WN+++   +           +  M  +  + +++TY ++  AC  
Sbjct: 236 ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGS 295

Query: 146 TEADKEGV-----QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
              +K G+     QVH ++++  +    H   S          VN               
Sbjct: 296 CN-EKMGMFNCGRQVHGYILRTVVEPSHHFVLS----------VN--------------- 329

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             NALI  Y K   +  A+ +F     ++  S+NA++SG+    R EEA  +F+EM +++
Sbjct: 330 --NALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERN 387

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            +TW+ +I G  ++G+ +E L++FN+M+ + ++P  +  +  + AC+ LG+LD G  IH 
Sbjct: 388 VLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHS 447

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            V R         G AL+ MY++CG ++ A  VF  M   +  +WNAMI  LA HG    
Sbjct: 448 QVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVK 507

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AIELF +M +E + PDRITF  +L+AC HAG+I  G      M   YGI P  +HY  ++
Sbjct: 508 AIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLI 567

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR- 499
           DLL RAG   +A+ VI SMP E  A +WEALL  CR HG +E G +    LLE+ P    
Sbjct: 568 DLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDG 627

Query: 500 -------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                        + D+VA++R LM+ERG+K  PG S ++V  ++H F   D  HP+V+ 
Sbjct: 628 TYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQA 687

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           +Y  L++++ ++K  GY P++  VL D++ E KE +   HSEKLA+ +G +    GATIR
Sbjct: 688 VYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIR 747

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V KNLR+C DCH+A K ISKV +R+I+VRDR R+HHF+NG+CSC ++W
Sbjct: 748 VFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 219/498 (43%), Gaps = 63/498 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV--------- 100
           +  HA IL SG   + ++   L+  +  S  SN   A K+F+ + KP++           
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKS--SNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 101 ------------------------WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
                                   +N+++ A    N+    ++L+ +M      P+ FT+
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 137 PTVFKACSITEADKEGVQ-VHAHVVKNGLCGDVHVKSSGIQMYACFGC---------VNK 186
            +V  A S+   ++   Q +H  V+K G      V ++ +  Y C            +  
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 187 ARQILDDGSKSDVI--CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG 244
           AR++ D+  K+ +    W  +I GY++  D+  A+EL          ++NAMISG+ R G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 245 RFEEARKLFNEMND----KDEITWSAIIDG----YTKDGYYKEALEVFNEMQRDKIKP-R 295
            +EEA   F  M+     +DE T++++I        K G +    +V   + R  ++P  
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            FVLS   A        D+ I       +  +  D +   A++  Y    R++ A  +F 
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPV-RDIISWNAVLSGYVNAQRIEEANSIFS 381

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +M  + V TW  MI GLA +G  ++ ++LF +M+ E + P    FA  ++AC+  G +D 
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDN 441

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G Q  + + ++ G D  +     ++ +  R G +  AE V  +MP   ++  W A++ A 
Sbjct: 442 GQQIHSQVIRL-GHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAAL 499

Query: 476 RKHGE----VEFGERLGK 489
            +HG     +E  E++ K
Sbjct: 500 AQHGHGVKAIELFEQMMK 517



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 124/291 (42%), Gaps = 17/291 (5%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A  +F+ + + NV  W  ++    ++      + L+++M     +P  + +     A
Sbjct: 373 IEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           CS+  +   G Q+H+ V++ G    +   ++ I MY+  G V  A  +       D + W
Sbjct: 433 CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSW 492

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMND 258
           NA+I    + G    A ELF+    ++      ++  +++     G  +E R  F+ M  
Sbjct: 493 NAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCT 552

Query: 259 KDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           +  IT     ++ +ID   + G + +A  V   M  +   P   +   +LA C   G ++
Sbjct: 553 RYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAP---IWEALLAGCRIHGNME 609

Query: 314 QGIWIHDHVKRNSICVDAVLGTALV--DMYAKCGRLDMAWKVFEDMKMKEV 362
            GI   D +      +    GT ++  +MYA  G+ D   +V   M+ + V
Sbjct: 610 LGIQAADRLLE---LIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGV 657



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 12/221 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H+ +++ GH         L+  +  SR    E A  VF ++   +   WN+++ A  
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMY--SRCGVVESAESVFLTMPYVDSVSWNAMIAALA 500

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH-AHVVKNGLCGDV 168
           +H    + I L+ +M+  D  P++ T+ T+  AC+     KEG         + G+    
Sbjct: 501 QHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGE 560

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGD----IEGAKELFK 223
              +  I +    G   KA+ ++     ++    W AL+ G    G+    I+ A  L +
Sbjct: 561 DHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLE 620

Query: 224 STKDKNTGSYNAMISGFARFGRFEE---ARKLFNEMNDKDE 261
               ++ G+Y  + + +A  G+++E    R L  E   K E
Sbjct: 621 LIPGQD-GTYIILSNMYAALGQWDEVARVRLLMRERGVKKE 660


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 332/595 (55%), Gaps = 59/595 (9%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           ++   L +F   +  + F  N++LR  L H  P  + S +         P+ FT+     
Sbjct: 94  HYAYPLALFRRANSTSAFASNNLLR-VLPHPLPLTLFSRFRR-----RNPHSFTFLLASI 147

Query: 142 ACSITEADKE-------GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           +  +  A          G  VHA  VK G  GD+ V+                       
Sbjct: 148 SNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVR----------------------- 184

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKLF 253
                   NAL+  Y   GD+   + +F    + ++  ++N +++G+ R G    AR++F
Sbjct: 185 --------NALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVF 236

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           +EM  +DEI+WS ++ GY K+   + AL VF  M    ++P +  +   L+A A LG L+
Sbjct: 237 DEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLE 296

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G ++H+ V+R+ + V   +G ALVDMYAKCG + +A +VF+ M+ ++VF WNAMI GLA
Sbjct: 297 HGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLA 356

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG   DA+ELF +   E + P  +TF  VL+ C+ +G++  G +    + + Y I+PE+
Sbjct: 357 AHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEM 416

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHYGC+VDLLGRAG + EA E+I  M + P+  +W  +L +C+ HG V+ G  +G  L+E
Sbjct: 417 EHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIE 476

Query: 494 MEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           ++P +               + D+V ++RKLM  RG   + G S+++ +G +H+F  GD 
Sbjct: 477 LDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDT 536

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            H    +IY  L  I ++L   GY P+ S VL DI EEEK  A K HSE+LAIA+GFI  
Sbjct: 537 YHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVL 596

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + G+ IR++KNLRVC DCH  +K+++ VF+R+IIVRD  R+HH + GKCSC D+W
Sbjct: 597 EAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/656 (35%), Positives = 361/656 (55%), Gaps = 66/656 (10%)

Query: 29  FSQKTILDILNTKCHTSWQHL-KQAHAVILKSG--HFQDHYVSGTLVKCHANSRFSNFEL 85
            S + +  +L    H S+ H  ++ HAV+  SG       Y+S  L + +A+S       
Sbjct: 4   LSYQNVRLLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASS--GEIAT 61

Query: 86  ALKVFNSV---HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           A K+F+ +    K NV  W ++L +          + L+ EM     + +  +   +F  
Sbjct: 62  AQKLFDEIPLSDKDNV-DWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGV 120

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+  E  + G Q H   VK G    V V                              C 
Sbjct: 121 CAKLEDLRFGEQGHGVAVKMGFLTSVKV------------------------------C- 149

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NAL+D Y KCG +   K +F++ ++K+  S+  ++    ++   +  R++F+EM +++ +
Sbjct: 150 NALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVV 209

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC-VLAACASLGALDQGIWIHDH 321
            W+ ++ GY   G+ +E LE+  EM         FV  C +L+ACA  G L  G W+H +
Sbjct: 210 AWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVY 269

Query: 322 VKRNSICV------DAVL-GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
             + ++ +      D V+ GTALVDMYAKCG +D + KVF  M+ + V TWNA+  GLAM
Sbjct: 270 ALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAM 329

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG+    I++F +M RE ++PD +TF  +LSAC+H GM+D G +    +Q  YG++P+V+
Sbjct: 330 HGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSLQ-FYGLEPKVD 387

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VD+LGRAG + EAE ++  MP+ PN  V  +LLG+C  HG++E  ER+ + L++M
Sbjct: 388 HYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQM 447

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
            P +               R D    +R  ++ RGI+  PG S I VN  +H F +GD S
Sbjct: 448 SPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRS 507

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF--DIDEEEKETAPKYHSEKLAIAFGFIN 598
           HP+ KE+YL L ++IE+++  GY P+ S ++   + D EEKE A   HSEKLA+ FG + 
Sbjct: 508 HPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAVCFGLLE 567

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T P   + V KNLR+C DCHSA K++SKV+ R+II+RDR R+H F+ G CSC+D+W
Sbjct: 568 TKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 336/610 (55%), Gaps = 51/610 (8%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           ++ ++  TL+  +   R  +   A ++ +++ +     WN+++   L H      ++L+ 
Sbjct: 221 RNEFIWTTLITGYV--RNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFR 278

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD----VHVKSSGIQMY 178
           +M  +  + ++ TY +V  AC+       G QVHA+++KN L  D    + V ++ I +Y
Sbjct: 279 KMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLY 338

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
             +G V+ AR+I  +    D+I WN L+ GY+  G +E AK  F    +KN  ++  MIS
Sbjct: 339 WKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMIS 398

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           G A+ G  E+A KLFN+M           +DGY                     +P  + 
Sbjct: 399 GLAQNGFGEQALKLFNQMK----------LDGY---------------------EPNDYA 427

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            +  + AC+ LGAL+ G  +H  +          +G A++ MYA+CG ++ A  +F  M 
Sbjct: 428 FAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMP 487

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
             +  +WN+MI  L  HG    AIEL+ +M +E + PDR TF  VLSAC+HAG+++ G +
Sbjct: 488 FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNR 547

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M + YGI P  +HY  ++DL  RAG  ++A+ VI SMP E  A +WEALL  CR H
Sbjct: 548 YFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTH 607

Query: 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSM 524
           G ++ G    + L ++ PQ+               R +DVA+ RKLM++RG+K  P  S 
Sbjct: 608 GNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSW 667

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
            +V   +H F   D  HP+V  IY  L+K+  ++K  GY P++  VL D++ E KE A  
Sbjct: 668 TEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALS 727

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSEKLA+AFG +    GAT+RV KNLR+C DCH+A K +SKV  R+I+VRD  R+HHF+
Sbjct: 728 THSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFK 787

Query: 645 NGKCSCNDFW 654
           NG+CSC ++W
Sbjct: 788 NGECSCRNYW 797



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 201/452 (44%), Gaps = 82/452 (18%)

Query: 76  ANSRFSNFELALKVFNSV---HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
           A S   N ++A ++FN      +  VF +N+++      N+    I L+  M   + +P+
Sbjct: 88  AYSALGNLKMAREIFNETPLDMRDTVF-YNAMITGYSHMNDGHSAIELFRAMRWANFQPD 146

Query: 133 KFTYPTVFKACSITEAD-KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
            FT+ +V  A ++   D ++  Q+H  VVK            GI+++             
Sbjct: 147 DFTFASVLSASTLIFYDERQCGQMHGTVVK-----------FGIEIFPA----------- 184

Query: 192 DDGSKSDVICWNALIDGYLKCGD---------IEGAKELFKSTKDKNTGSYNAMISGFAR 242
                      NAL+  Y+KC           +  A++LF     +N   +  +I+G+ R
Sbjct: 185 ---------VLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVR 235

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G    AR++ + M ++  I W+A+I GY   G +++AL +F +M+   ++  +   + V
Sbjct: 236 NGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSV 295

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVD----AVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           ++ACA  G    G  +H ++ +N +  D      +G  L+ +Y K G++D A K+F +M 
Sbjct: 296 ISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMP 355

Query: 359 MKEVFTWNA-------------------------------MIGGLAMHGRADDAIELFFK 387
           +K++ TWN                                MI GLA +G  + A++LF +
Sbjct: 356 VKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQ 415

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+ +   P+   FA  ++AC+  G ++ G Q    +  + G D  +     ++ +  R G
Sbjct: 416 MKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHL-GHDSTLSVGNAMITMYARCG 474

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            +  A  +  +MP   +   W +++ A  +HG
Sbjct: 475 IVEAARTMFLTMPF-VDPVSWNSMIAALGQHG 505



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 183/424 (43%), Gaps = 41/424 (9%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH HV+ +G     H+ +  I +Y        AR++ D+  + DVI    LI  Y   G+
Sbjct: 35  VHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGN 94

Query: 215 IEGAKELFKSTK--DKNTGSYNAMISGFARFGRFEEARKLFNEMN----DKDEITWSAII 268
           ++ A+E+F  T    ++T  YNAMI+G++       A +LF  M       D+ T+++++
Sbjct: 95  LKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVL 154

Query: 269 DGYTKDGY-YKEALEVFNEMQRDKIKPRKFVLSCVLAA---CA------SLGALDQGIWI 318
              T   Y  ++  ++   + +  I+    VL+ +L+    CA      S   +     +
Sbjct: 155 SASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKL 214

Query: 319 HDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
            D + KRN       + T L+  Y + G L  A ++ + M  +    WNAMI G   HG 
Sbjct: 215 FDEMPKRNEF-----IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY- 436
            +DA+ LF KM+   ++ D  T+  V+SACA  G    G Q   Y+ +   ++P+ +   
Sbjct: 270 FEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK-NELNPDRDFLL 328

Query: 437 ---GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE-----FGERLG 488
                ++ L  + G +  A ++   MP++ +   W  LL      G +E     F +   
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387

Query: 489 KILLEME------PQNRRCDDVAKMRKLMKERGIKTN--PGSSMIDVNGVIHEFRTGDGS 540
           K LL          QN   +   K+   MK  G + N    +  I    V+     G   
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQL 447

Query: 541 HPQV 544
           H Q+
Sbjct: 448 HAQI 451



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 16/323 (4%)

Query: 34  ILDILNTKCHTSWQHLKQAHAV-ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           +L + NT     W++ K   A  I      +D     TL+  + N+     E A   F  
Sbjct: 327 LLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNA--GRMEEAKSFFAQ 384

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           + + N+  W  ++    ++    + + L+++M     +PN + +     ACS+  A + G
Sbjct: 385 MPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENG 444

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            Q+HA +V  G    + V ++ I MYA  G V  AR +       D + WN++I    + 
Sbjct: 445 RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQH 504

Query: 213 GD----IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT----- 263
           G     IE  +++ K     +  ++  ++S  +  G  EE  + FN M +   I      
Sbjct: 505 GHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDH 564

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++ +ID + + G + +A  V + M  +   P   +   +LA C + G +D GI   + + 
Sbjct: 565 YARMIDLFCRAGKFSDAKNVIDSMPFEARAP---IWEALLAGCRTHGNMDLGIEAAEKLF 621

Query: 324 RNSICVDAVLGTALVDMYAKCGR 346
           +     D      L +MYA  GR
Sbjct: 622 KLIPQHDGTY-VLLSNMYASLGR 643


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/661 (34%), Positives = 357/661 (54%), Gaps = 82/661 (12%)

Query: 19  ISATNI---PT--SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           ISAT +   PT      Q   L ++ T C +  Q LKQ H+  + +G   +  V   ++ 
Sbjct: 2   ISATTLSPPPTHLPSLPQTPPLSLIKT-CKSMAQ-LKQIHSQTICTGLISNPIVPAQIIA 59

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
                   + E A  VF+++  PN FVWN++++       P   +S+Y EM+     P++
Sbjct: 60  FCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDE 119

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +TYP + K  +   A K G ++H H+VK G   +V V+++ I +Y+  G V+ AR + D 
Sbjct: 120 YTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDR 179

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEA--- 249
            SK DV+ WN +I GY +    + + +LF    + +   S   ++S  +   + ++    
Sbjct: 180 SSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVG 239

Query: 250 ----RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
               R  F++M ++D ++W+A+IDGY +   +KE L +F EMQ   IKP +F +  +L A
Sbjct: 240 KRVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 299

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA LGAL+ G WI  ++ +N I +D+ +G AL+DMY  CG ++ A ++F  M  ++  +W
Sbjct: 300 CAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 359

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDR-----------ITFACVLSACAHAGMID 414
            A+I GLA++G  ++A+++F +M +  + PD            I +  +L AC     + 
Sbjct: 360 TAVIFGLAINGYGEEALDMFSQMLKASITPDEVIKNMPVKPNSIVWGSLLGACR----VH 415

Query: 415 RGLQ-ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           R  + A    QQ+  ++PE                               N AV+  L  
Sbjct: 416 RDEEMAEMAAQQILELEPE-------------------------------NGAVYVLL-- 442

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            C  +      E+L ++                 RKLM +RGIK  PG S+I++NG +HE
Sbjct: 443 -CNIYAACNRWEKLHEV-----------------RKLMMDRGIKKTPGCSLIEMNGSVHE 484

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HPQ KEIY  L ++   LK  GYSP++S+V  DI EEEKE+A   HSEKLAIA
Sbjct: 485 FVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIA 544

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I++ PG TIR++KNLR+C DCH   KL+SKV+ R++IVRDR R+HHFR+G CSC D+
Sbjct: 545 FGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDY 604

Query: 654 W 654
           W
Sbjct: 605 W 605


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 354/656 (53%), Gaps = 56/656 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+ H  +LK G   +  V  +L+   A  +F   E A  +F+ + +P+V  WNS++  C+
Sbjct: 490  KRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             +      + ++ +M+ +  + +  T  +V  A +       G  +H   VK     +V 
Sbjct: 548  VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV 607

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
              ++ + MY+  G +N A ++      + ++ W + I  Y++ G    A  LF   + K 
Sbjct: 608  FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 229  --------------------------------------NTGSYNAMISGFARFGRFEEAR 250
                                                  N    NA+I+ +A+ G  EEAR
Sbjct: 668  VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 251  KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             +F+++  KD ++W+ +I GY+++    EALE+F +MQ+ + KP    ++CVL ACA L 
Sbjct: 728  LVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLA 786

Query: 311  ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            ALD+G  IH H+ R     D  +  ALVDMYAKCG L +A  +F+ +  K++ +W  MI 
Sbjct: 787  ALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 846

Query: 371  GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
            G  MHG  ++AI  F +M+   + PD  +F+ +L+AC+H+G+++ G +    M+   G++
Sbjct: 847  GYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVE 906

Query: 431  PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            P++EHY C+VDLL R G L++A + I SMP++P+  +W  LL  CR H +V+  E++ + 
Sbjct: 907  PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEH 966

Query: 491  LLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            + E+EP N R               ++V K+RK M++RG K NPG S I+V G  + F  
Sbjct: 967  IFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 1026

Query: 537  GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            G+  HPQ K I ++L+K+  +++ E Y      VL + D+ EKE     HSEK A+AFG 
Sbjct: 1027 GNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGI 1086

Query: 597  INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
            +N  PG T+RV KN RVC DCH   K +SK  KR+I++RD  R+HHF++G CSC D
Sbjct: 1087 LNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 229/471 (48%), Gaps = 48/471 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H+VI+ +G   D  +   LV  + N    +     K+F+ +    VF+WN ++    
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYVNC--GDLVQGRKIFDKIMNDKVFLWNLLMSEYA 446

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       +SL+ +M  +    N +T+  V K  +     KE  +VH +V+K G   +  
Sbjct: 447 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 506

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V +S I  Y  FG V  A  + D+ S+ DV+ WN++I+G +  G      E+F       
Sbjct: 507 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 566

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           K+   +     N ++  +++ G    A 
Sbjct: 567 VEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 626

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F +M D   ++W++ I  Y ++G Y +A+ +F+EMQ   ++P  + ++ ++ ACA   
Sbjct: 627 EVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 686

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +LD+G  +H +V +N +  +  +  AL++MYAKCG ++ A  VF  + +K++ +WN MIG
Sbjct: 687 SLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 746

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGI 429
           G + +   ++A+ELF  MQ++  +PD IT ACVL ACA    +D+G +   + +++ Y  
Sbjct: 747 GYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS 805

Query: 430 DPEVEHYGC-IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           D    H  C +VD+  + G L  A+ +   +P + +   W  ++     HG
Sbjct: 806 DL---HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 852



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 190/410 (46%), Gaps = 45/410 (10%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           +Y +V + C+  ++ ++G +VH+ ++ NG+  D  + +  + MY   G + + R+I D  
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--------------------------- 227
               V  WN L+  Y K G+   +  LFK  +                            
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 228 ------------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                        NT   N++I+ + +FG  E A  LF+E+++ D ++W+++I+G   +G
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           +    LE+F +M    ++     L  VL A A++G L  G  +H    +     + V   
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
            L+DMY+KCG L+ A +VF  M    + +W + I      G   DAI LF +MQ + +RP
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP 670

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D  T   ++ ACA +  +D+G    +Y+ +  G+   +     ++++  + G + EA  V
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLV 729

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
            S +P++ +   W  ++G    + +        ++ L+M+ Q +  DD+ 
Sbjct: 730 FSKIPVK-DIVSWNTMIGG---YSQNSLPNEALELFLDMQKQFKP-DDIT 774



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           +A I+ + + G  + A+E+  + +  ++    +    VL  CA   +L+ G  +H  +  
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N I +D  LG  LV MY  CG L    K+F+ +   +VF WN ++   A  G   +++ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F KMQ+  +  +  TF CVL   A  G +    +   Y+ ++ G          ++    
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL-GFGSNTAVVNSLIAAYF 516

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + G +  A  +   +  EP+   W +++  C  +G
Sbjct: 517 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 342/598 (57%), Gaps = 19/598 (3%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A S+  N E    VF+ +   +   +N+V+     +    + +  +  M     +   +T
Sbjct: 98  AYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYT 157

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           + +V  ACS     K G Q+H  +V   L   V V ++   MYA  G +++AR + D   
Sbjct: 158 HVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMV 217

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARK 251
             +V+ WN++I GYL+ G  E   +LF   +      +  + + ++S + + G  +EA K
Sbjct: 218 NKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACK 277

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
            F E+ +KD++ W+ ++ G  ++G  ++AL +F EM  + ++P  F +S V+++CA L +
Sbjct: 278 TFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLAS 337

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L QG  +H       +  D ++ +ALVDMY+KCG    AW VF+ M  + V +WN+MI G
Sbjct: 338 LCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILG 397

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A +G+  +A+ L+ +M  E ++PD ITF  VLSAC HAG+++RG      + +++G++P
Sbjct: 398 YAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNP 457

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             +HY C+++LLGRAGY+ +A ++I SM  EPN  +W  LL  CR + +V  GE   + L
Sbjct: 458 TFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHL 517

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            E++P N               R  DVA +R LMK   IK     S I+++  +H+F   
Sbjct: 518 FELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAE 577

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D +H + ++IY  L ++I+KL+  G++P+++ VL D+ EEEK  +  YHSEKLA+AF  I
Sbjct: 578 DRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLI 637

Query: 598 NTDPGAT-IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
               G T IR++KN+RVC DCH   K +SK+ +R II+RD  R+HHF  G+CSC D W
Sbjct: 638 KKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 127/229 (55%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           +D    N L+  Y K G++  A++LF     ++  S+NAM+S +++ G  E+ R +F++M
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
           +  D ++++ +I G++ +G   +ALE F  MQ +  +   +    VL AC+ L  + +G 
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  +   S+     +  AL +MYAKCG LD A  +F+ M  K V +WN+MI G   +G
Sbjct: 176 QIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNG 235

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           + +   +LF +MQ   + PD++T + +LSA    G ID   +    +++
Sbjct: 236 QPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKE 284


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/684 (32%), Positives = 362/684 (52%), Gaps = 63/684 (9%)

Query: 23  NIPTSEFSQKTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHANSR 79
           ++  +EF+  T+L      C  S ++LKQ    H++I+K G+  + ++   LV  ++   
Sbjct: 309 DVKCNEFTLTTVLK----GCANS-KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
            +    A+ VF ++ KP++ VW++++    +  +    I L+  M   D+ PN++T  ++
Sbjct: 364 LA--IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL 421

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
             A + T   + G  +HA V K G   DV V ++ + MY   GCV+   ++ +     D+
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDL 481

Query: 200 ICWNALIDGYLKCG-----------------------------------DIEGAKE---- 220
           I WNA + G   CG                                   D+   ++    
Sbjct: 482 ISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAH 541

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           + K+  D N     A+I  +A+    E+A   FN ++ +D  TW+ II  Y +    ++A
Sbjct: 542 IIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKA 601

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L  F +MQ++ +KP +F L+  L+ C+SL +L+ G  +H  V ++    D  +G+ALVDM
Sbjct: 602 LNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG ++ A  +FE +  ++   WN +I G A +G+ + A+  F  M  E + PD +TF
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +LSAC+H G+++ G +    M + +GI P V+H  C+VD+LGR G   E E+ I  M 
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAK 506
           +  NA +WE +LGA + H  +  GE+    L E++P+                R DDV +
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R LM  +G+K  PG S ++ NG +H F + D SHPQ++EI+L L ++  +L    Y P 
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
           +  VL ++ E EK+   ++HSE+LA+ F  I+T     IR+ KNLR+C DCH   K IS 
Sbjct: 902 TEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISS 961

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSC 650
           +  ++I+VRD  R+HHF+NG CSC
Sbjct: 962 ITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 216/489 (44%), Gaps = 50/489 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H +I+K     D ++  +LV  +A  R+S +  A  V   +   +V  W ++++  +
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY--ARLVLAKMPDRDVVSWTALIQGLV 189

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   I L+ EM      PN+FT  T  KACS+  A   G Q+HA   K GL  D+ 
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+ + +YA  G +  A ++     + + + WN L++GY + GD+ G  +LF S  + +
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 230 T------------GSYNA---------------------------MISGFARFGRFEEAR 250
                        G  N+                           ++  +++ G   +A 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F  +   D + WSA+I    + G  +E++++F+ M+     P ++ +  +L+A  + G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L  G  IH  V +     D  +  ALV MY K G +    K++E M  +++ +WNA + 
Sbjct: 430 NLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLS 489

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GL   G  D  + +F+ M  E   P+  TF  +L +C+    +  G Q   ++ +    D
Sbjct: 490 GLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDD 549

Query: 431 PEVEHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
               ++ C  ++D+  +  YL +A+   + + +  +   W  ++     + +   GE+  
Sbjct: 550 ---NNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKAL 602

Query: 489 KILLEMEPQ 497
               +M+ +
Sbjct: 603 NYFRQMQQE 611



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 184/417 (44%), Gaps = 52/417 (12%)

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFT---------YPTVFKACSITEADKEGVQVHAHVVK 161
           HN P+R    +      D+K N+           Y ++ + C+   +      +H  +VK
Sbjct: 83  HNFPYRFN--FEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVK 140

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           + +  D H+  S + +YA       AR +L      DV+ W ALI G +  G    +  L
Sbjct: 141 DVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYL 200

Query: 222 FKSTKDKN---------TGSY------------------------------NAMISGFAR 242
           F+  +++          TG                                +A++  +A+
Sbjct: 201 FQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK 260

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  E A K+F  M +++++TW+ +++GY + G     L++F  M    +K  +F L+ V
Sbjct: 261 CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA+   L QG  IH  + +     +  +G  LVDMY+KCG    A  VF+ +K  ++
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
             W+A+I  L   G+++++I+LF  M+     P++ T   +LSA  + G +  G Q++  
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHA 439

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
               YG + +V     +V +  + G + +  ++  SM ++ +   W A L      G
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCG 495



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           S +L  CAS  +L     IH  + ++ I  D+ L  +LV++YAKC     A  V   M  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +W A+I GL   G A+D+I LF +MQ E + P+  T A  L AC+    +D G Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                ++ G+  ++     +VDL  + G +  A ++   MP E N   W  LL    + G
Sbjct: 236 HAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQRG 293

Query: 480 EVEFGERLGKILLEME 495
           +V    +L   ++E++
Sbjct: 294 DVTGVLKLFCSMMELD 309


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 323/595 (54%), Gaps = 84/595 (14%)

Query: 81  SNFELALKVFNSVHKPNVFVW-NSVLRACLEHNEPWR-----VISLYSEMVGVDSKPNKF 134
           ++   A +VF+ V  P   VW N++LR     + P        + ++  M+     P+ +
Sbjct: 75  AHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTY 134

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T+ ++ KAC+   A +EG Q HA  VK G     +V+ + I MYA               
Sbjct: 135 TFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYA--------------- 179

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
                           +CGD   A+ +F  T      SYNAMI+   R  R         
Sbjct: 180 ----------------ECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSR--------- 214

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
                                   EAL +F EMQ   +KP    +  VL+ACA LGAL+ 
Sbjct: 215 ----------------------PGEALVLFREMQGKGLKPTSVTVISVLSACALLGALEL 252

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G W+HD+V++  +     + TAL+DMYAKCG L+ A  VF+ M+ K+   W+ MI   A 
Sbjct: 253 GRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYAN 312

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG   +AI LF +M++E M+PD ITF  VL AC+H+G++  GLQ    M+  +GI P ++
Sbjct: 313 HGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HGIVPGIK 371

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HYGC+ DLL R+G L  A + I  +P+ P   +W  LL AC  HG+ E G+R+ + +L++
Sbjct: 372 HYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKL 431

Query: 495 EPQ--------NRRC------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           +          +  C      +++  +RKLM E+G+   PG S I+++  +HEF  GDG 
Sbjct: 432 DDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGR 491

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL-FDIDEEEKETAPKYHSEKLAIAFGFINT 599
           HP+ +E   M+ ++I++LK+ GY PN+S V   ++ EEEK  + KYHSEKLAIAFG +NT
Sbjct: 492 HPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNT 551

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PGAT+RV+KNLRVC DCHS  KL+S VF R II+RD  R+HHF  G CSC D+W
Sbjct: 552 APGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 131/310 (42%), Gaps = 40/310 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +QAHA+ +K G     YV  TL+  +A     +   A  +F       V  +N+++ A +
Sbjct: 153 RQAHALAVKLGAADHDYVRPTLINMYAEC--GDARAARVMFGGTDGGCVVSYNAMIAAAV 210

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             + P   + L+ EM G   KP   T  +V  AC++  A + G  VH +V K GL   V 
Sbjct: 211 RSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVK 270

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I MYA                               KCG +E A ++F+  + K+
Sbjct: 271 VSTALIDMYA-------------------------------KCGSLEDAIDVFQGMESKD 299

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFN 285
             +++ MI  +A  G   EA  LF EM  +    D+IT+  ++   +  G   E L+ F+
Sbjct: 300 RQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFD 359

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +M+   I P      CV    A  G L++     D +  N      +L   L+      G
Sbjct: 360 DMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT---PILWRTLLSACGGHG 416

Query: 346 RLDMAWKVFE 355
             ++  +VFE
Sbjct: 417 DFELGKRVFE 426


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/658 (33%), Positives = 356/658 (54%), Gaps = 56/658 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            AH +I       +     +L+  +A  +     +A  +F+ + K NV  W +++     
Sbjct: 48  HAHLIITNQATKDNIVQVNSLINLYA--KCDQIMVARILFDGMRKRNVVSWGALMAGYFH 105

Query: 111 HNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     V+ L+  M+ VD  +PN++ + T+  +CS +    EG Q H + +K+GL    +
Sbjct: 106 NGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQY 165

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE--------- 220
           VK++ I MY+    V  A  +  +    DV  +N +I+G L+ G    A E         
Sbjct: 166 VKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDEC 225

Query: 221 ------------------------------LFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                         +F++  + ++   +A+I  + + G    AR
Sbjct: 226 IVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNAR 285

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+FN +  K+ ++W+AI+  Y+++G ++EAL  F EM+ D + P ++  + +L +CA + 
Sbjct: 286 KVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGIS 345

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G  +H  +K++      ++G AL++MY+K G ++ A KVF +M  ++  TW+AMI 
Sbjct: 346 ALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMIC 405

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GL+ HG   +A+ +F +M   K  P  +TF  VLSACAH G +  G   L  + +  GI+
Sbjct: 406 GLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIE 465

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P VEHY CIV LL +AG L EAE  + S P++ +   W  LL AC  H     G+++ ++
Sbjct: 466 PGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAEL 525

Query: 491 LLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           +L+M+P              + +R D V K+RKLM+ER +K  PG+S I++   IH F +
Sbjct: 526 VLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVS 585

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
              +HP+  +IY  +++++  ++  GY P+ + V  D+++E+K     YHSEKLAIA+G 
Sbjct: 586 EGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGL 645

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + T  GA IRVIKNLR+C DCHSA KLISKV  R IIVRD  R+H F +G CSC D+W
Sbjct: 646 MKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 172/383 (44%), Gaps = 44/383 (11%)

Query: 139 VFKACSITEADKEGVQVHAH-VVKNGLCGDVHVK-SSGIQMYACFGCVNKARQILDDGSK 196
           + K  + T+  K G  +HAH ++ N    D  V+ +S I +YA    +  AR + D   K
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKS------------------TKDKNTGSY----- 233
            +V+ W AL+ GY   G +     LFK+                  +   ++G       
Sbjct: 91  RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150

Query: 234 -----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                            NA+I  ++R    + A  ++ E+   D  +++ II+G  ++GY
Sbjct: 151 CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGY 210

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EALEV + M  + I             C+ L  L  G+ +H  + R     D+ + +A
Sbjct: 211 PSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSA 270

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           ++DMY KCG +  A KVF  ++ K V +W A++   + +G  ++A+  F +M+ + + P+
Sbjct: 271 IIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPN 330

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             TFA +L++CA    +  G    T +++  G +  +     ++++  ++G +  A +V 
Sbjct: 331 EYTFAVLLNSCAGISALGHGKLLHTRIKKS-GFEDHIIVGNALINMYSKSGSIEAAHKVF 389

Query: 457 SSMPMEPNAAVWEALLGACRKHG 479
             M    ++  W A++     HG
Sbjct: 390 LEMICR-DSITWSAMICGLSHHG 411


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 314/535 (58%), Gaps = 40/535 (7%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+   +  + +AC +++  +   + H  +++ G   +  + +S I  Y     +N A Q+
Sbjct: 9   PDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQV 68

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
           +       V  W   + G                         N +I  F R G +E A+
Sbjct: 69  I-----RQVFSWTVSLAGL------------------------NLVIDSFMRIGEYEIAK 99

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F +M D+D +TW+++I GY ++G ++EAL  F  M    ++P KF  + V+ ACA LG
Sbjct: 100 KVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLG 159

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL+   W+HD + +  I V+ +L +AL+DMY+KCGR++ A +VFE ++  +V  WN++I 
Sbjct: 160 ALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLIN 219

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA+HG A DA+ +F KM+ E + PD +TF  +L AC+H G++  G +    M+  Y I 
Sbjct: 220 GLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIK 279

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE----- 485
           P++EHYG +VDLLGRAG L EA  +I++MPMEP+  VW  LL ACR H   E GE     
Sbjct: 280 PQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVAVAN 339

Query: 486 ----RLGKILL--EMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
               + G  +L   +     R D+  ++R++MKE G++   G S  +   V+H FR GD 
Sbjct: 340 ISGPKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDK 399

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP+ + +Y +L+ +I++ K+EG+ P++  V+ D+ EEEKE    +HSEKLA+A+G + T
Sbjct: 400 SHPETEALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALAYGILKT 459

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR+ KNLR+C DCH+  K++S +  R II+RDR+R+H F  G CSC D+W
Sbjct: 460 SPGTEIRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 148/343 (43%), Gaps = 41/343 (11%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R   +E+A KVF  +   +V  WNS++   + + +    +  +  M+  + +P+KFT+ +
Sbjct: 91  RIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFAS 150

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+   A      +H  +V+  +  +  + S+ I MY+  G +  A+++ +   ++D
Sbjct: 151 VITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERND 210

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKN----TGSYNAMISGFARFGRFEEARKLFN 254
           V  WN+LI+G    G    A  +F   + +N    + ++  ++   +  G  +E RK F+
Sbjct: 211 VSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFD 270

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M +   I      + A++D   + G   EA  +   M    ++P   V   +L+AC + 
Sbjct: 271 LMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAM---PMEPDVIVWRILLSACRT- 326

Query: 310 GALDQGIWIHDHVKRNSICVDAVLG------TALVDMYAKCGRLDMAWKVFEDMKMKEV- 362
                    H + +   + V  + G        L ++Y    R D A +V E MK + V 
Sbjct: 327 ---------HRNTELGEVAVANISGPKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVR 377

Query: 363 -------FTWNAMIGGLAMHGRADDAIELFFK-----MQREKM 393
                  F W  ++       ++    E  +K     +QR K+
Sbjct: 378 KRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKL 420



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 109/244 (44%), Gaps = 12/244 (4%)

Query: 21  ATNIPTSEFSQKTILDILNTKCHT--SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           ++N+   +F+  +++    T C    +  H +  H ++++     +  +S  L+  +  S
Sbjct: 138 SSNVEPDKFTFASVI----TACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMY--S 191

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +    E A +VF SV + +V VWNS++     H      + ++S+M   +  P+  T+  
Sbjct: 192 KCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLG 251

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG--IQMYACFGCVNKARQILDDGS- 195
           + KACS     KEG + +  +++N       ++  G  + +    G +++A  ++     
Sbjct: 252 ILKACSHCGLVKEGRK-YFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPM 310

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + DVI W  L+       + E  +    +     +G Y  + + +    R++ A+++   
Sbjct: 311 EPDVIVWRILLSACRTHRNTELGEVAVANISGPKSGDYVLLSNIYCSQNRWDNAQEVREM 370

Query: 256 MNDK 259
           M ++
Sbjct: 371 MKEE 374


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/595 (34%), Positives = 331/595 (55%), Gaps = 23/595 (3%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            ELA ++  S  +PNV  WN+VL  C  H      + + + M+    +P+  T  ++ K+
Sbjct: 242 LELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKS 301

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            + T   + G+++H   ++N L  DV+  ++ + MYA  G ++ A+++LD     ++  W
Sbjct: 302 VANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTW 361

Query: 203 NALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN- 257
           N+L+ GY   G  + A EL +  K    D +  ++N +I+G++  G+  +A  L  ++  
Sbjct: 362 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 421

Query: 258 ---DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
                + ++W+++I G   +G Y+++    +EMQ+D ++P    +S +L ACA L    +
Sbjct: 422 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKK 481

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    R +   D V+ TAL+DMY+K G L  A  +FE ++ K +   NAM+ GLA+
Sbjct: 482 GKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAV 541

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG+  +AIELF  M    ++PD ITF  +L+AC   G++  G +    M+  YG+ P  E
Sbjct: 542 HGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTE 601

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +Y C+VDLL R GYL EA + I   P++P A+ W ALL  C  HG +   E   + L  +
Sbjct: 602 NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFIL 661

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP N              R  D+   ++  MK RG+ + PG S I +   IH F      
Sbjct: 662 EPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKP 721

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP+  EIY  L +++ ++K  GY P++S + +++ EEEKE     H+EKLAI +G I +D
Sbjct: 722 HPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSD 781

Query: 601 PG-ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              A +RV+KN R+C DCH   K IS +  R II+RD VR+HHF +GKCSCND+W
Sbjct: 782 ASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 185/400 (46%), Gaps = 47/400 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q H++ +++G  +D  V+  LV   A   R  +    L         +  +WN  + A L
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHV-AML 131

Query: 110 EHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              E W   I+++ EM       + +T   V  AC    A +EG  VHA+ +K  L  D 
Sbjct: 132 AEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLAL--DA 189

Query: 169 HVKSSGI--QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---- 222
           H    G    MYA    V  A ++LD      V+ WNA++    + G ++ A EL     
Sbjct: 190 HPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMS 249

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           +S  + N  ++N ++SG +R GR                                +EAL 
Sbjct: 250 RSGPEPNVATWNTVLSGCSRHGR-------------------------------DREALG 278

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           V   M +  ++P    +S +L + A+ G L  G+ IH    RN +  D   GTALVDMYA
Sbjct: 279 VVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYA 338

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCGRLD A KV + ++ + + TWN+++ G A  GR D A+EL   M++ ++ PD  T+  
Sbjct: 339 KCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNG 398

Query: 403 VLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIV 440
           +++  +  G   +  QA+  ++Q+   G+ P V  +  ++
Sbjct: 399 LITGYSMNG---QSSQAVLLLRQIKAAGVTPNVVSWTSLI 435



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 40/354 (11%)

Query: 235 AMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           A++   AR GR     +L +E  +   KD + W+  +    +   + EA+ VF EMQ   
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           +    +  + VL AC   GAL +G  +H +  + ++    ++   L  MYA+   +  A 
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAAT 211

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +V + M    V  WNA++   A  G  DDA+EL  +M R    P+  T+  VLS C+  G
Sbjct: 212 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 412 MIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAA 466
              R  +AL  +  M   G+ P+      ++  +   G L    E+        +EP+  
Sbjct: 272 ---RDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVY 328

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
              AL+    K G ++  +   K+L  +E +N               R D   ++ +LMK
Sbjct: 329 TGTALVDMYAKCGRLDCAQ---KVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 385

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +  +  +    +   NG+I    TG   + Q  +  L+L++I    K  G +PN
Sbjct: 386 KNRLDPD----ITTWNGLI----TGYSMNGQSSQAVLLLRQI----KAAGVTPN 427


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 330/590 (55%), Gaps = 49/590 (8%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFK 141
           FELA   F  +   ++  WNS++    +       + ++S+M+   S KP+ FT  ++  
Sbjct: 224 FELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILS 283

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+  E    G Q+HA++++         ++SG                           
Sbjct: 284 ACANLEKLNIGKQIHAYILR------AETETSGA-------------------------V 312

Query: 202 WNALIDGYLKCGDIEGAKELFK--STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            NALI  Y K G +E A+ + +   T + N  ++ +++ G+ + G  + AR++FN++ D+
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D + W+A+I GY ++G + +ALE+F  M  +  +P  + L+ +L+  +SL  L+ G  IH
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-DMKMKEVFTWNAMIGGLAMHGRA 378
               +        +  AL+ MYAK G +++A +VF+     KE+ +W +MI  LA HG  
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLG 492

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +AI LF +M    M+PD IT+  VLSAC H G++++G +    M +++ I+P + HY C
Sbjct: 493 KEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DL GRAG L EA   I SMP+EP+   W +LL +C+ H   +  +   + LL ++P N
Sbjct: 553 MIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGN 612

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + ++ A+ RKLMK+RG++   G S I +   +H F   D  HPQ 
Sbjct: 613 SGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQK 672

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
            EIY ++ +I E++K  G+ P++  VL D++EE KE   KYHSEKLAIAFG +NT     
Sbjct: 673 DEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTA 732

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R++KNLRVC DCHSA K ISK+  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 733 LRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 195/423 (46%), Gaps = 55/423 (13%)

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           H+  + +++   F   +   QI+  G    V   N L+  Y K G +  A  +F     K
Sbjct: 15  HILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLK 74

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +T S+N +ISG+A+ G FE +R+L  EM D D ++W+AII GY + G +  A+ +F +M 
Sbjct: 75  STFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC---- 344
            +++ P +F +S VL++CA+   LD G  IH  V +  +     + T+L++MYAKC    
Sbjct: 135 SERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194

Query: 345 ---------------------------GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
                                      G+ ++A   FE M  +++ +WN+MI G +  G 
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 378 ADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
             +A+ +F KM  E  ++PD  T A +LSACA+   ++ G Q   Y+     +  E E  
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYI-----LRAETETS 309

Query: 437 GCI----VDLLGRAGYLAEAEEVIS-SMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           G +    + +  ++G +  A  ++  +     N   + +LL    K G V+    +   L
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 492 LEME-----------PQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVNGVIHEFRTGD 538
            + +            QN   +D  ++ +LM   G + N  +  +M+ V+  +     G 
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 539 GSH 541
             H
Sbjct: 430 QIH 432



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 197/445 (44%), Gaps = 70/445 (15%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           TL+  +A     NFE++ ++   +   +   W +++    +       I ++++M+    
Sbjct: 81  TLISGYAKQ--GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV 138

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
            P++FT   V  +C+  +    G ++H+ VVK GL   V V +S + MYA  G    A+ 
Sbjct: 139 PPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKV 198

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           + D  +  ++  WNALI  Y++ G  E A   F+   D++  S+N+MISG          
Sbjct: 199 VFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG---------- 248

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
                                Y++ GY  EAL +F++M  +  +KP  F L+ +L+ACA+
Sbjct: 249 ---------------------YSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACAN 287

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM------------------- 349
           L  L+ G  IH ++ R        +G AL+ MYAK G +++                   
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347

Query: 350 --------------AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
                         A ++F  ++ ++V  W AMI G   +G  +DA+ELF  M  E   P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407

Query: 396 DRITFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           +  T A +LS  +   +++ G Q   + ++      P V +   ++ +  + G +  A+ 
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKR 465

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V      +     W +++ A  +HG
Sbjct: 466 VFDLPNGKKEIVSWTSMIMALAQHG 490



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 36/279 (12%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWN 102
           T  +H KQ HA  +K+G      V+  L+  +A +   N  +A +VF+  + K  +  W 
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKT--GNINVAKRVFDLPNGKKEIVSWT 480

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           S++ A  +H      I+L+  M+ V  KP+  TY  V  AC+     ++G + +      
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYY------ 534

Query: 163 GLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG--YLKC 212
            +  +VH     +  YAC        G + +A   ++    + D I W +L+      K 
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 213 GDI-EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA---RKLFNEMNDKDE--ITWSA 266
            D+ + A E        N+G+Y A+ + ++  G++E A   RKL  +   + E  I+W  
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH 654

Query: 267 I-----------IDGYTKDGYYKEALEVFNEMQRDKIKP 294
           I           +    KD  YK   E++ E+++    P
Sbjct: 655 IKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIP 693


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/622 (35%), Positives = 341/622 (54%), Gaps = 50/622 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA I+K+G  Q   +  TL+  +        + AL++F+++ + +   W S+L AC 
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLNAYGKCGL--IQDALQLFDALPRRDPVAWASLLTACN 80

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA--DKEGVQVHAHVVKNGLCGD 167
             N P R +S+   ++     P+ F + ++ KAC+       K+G QVHA    +    D
Sbjct: 81  LSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDD 140

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             VKSS                               LID Y K G  +  + +F S   
Sbjct: 141 DVVKSS-------------------------------LIDMYAKFGLPDYGRAVFDSISS 169

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            N+ S+  MISG+AR GR  EA +LF +   ++   W+A+I G  + G   +A  +F EM
Sbjct: 170 LNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEM 229

Query: 288 QRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           + + I      VLS V+ ACA+L   + G  +H  V          +  AL+DMYAKC  
Sbjct: 230 RHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSD 289

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           L  A  +F +M  K+V +W ++I G A HG+A++A+ L+ +M    ++P+ +TF  ++ A
Sbjct: 290 LVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHA 349

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAG++ +G      M + +GI P ++HY C++DL  R+G+L EAE +I +MP+ P+  
Sbjct: 350 CSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEP 409

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMK 512
            W ALL +C++HG  +   R+   LL ++P++                 +DV+K+RKLM 
Sbjct: 410 TWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMM 469

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
               K  PG S ID+    H F  G+ SHP   EI  +++++ E+++  GY+P++S VL 
Sbjct: 470 TLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLH 529

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D+D++EKE    +HSE+LA+A+G +   PG  IR++KNLRVC DCH+  KLIS +  R+I
Sbjct: 530 DMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREI 589

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
            VRD  RYHHF++G CSCNDFW
Sbjct: 590 YVRDAKRYHHFKDGNCSCNDFW 611



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 25/261 (9%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W+  KQ H V++  G+    ++S  L+  +A  + S+   A  +F  + + +V  W S++
Sbjct: 255 WELGKQMHGVVITLGYESCLFISNALIDMYA--KCSDLVAAKYIFCEMCRKDVVSWTSII 312

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               +H +    ++LY EMV    KPN+ T+  +  ACS      +G  +   +V++   
Sbjct: 313 VGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVED--- 369

Query: 166 GDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEG 217
              H  S  +Q Y C        G +++A  ++       D   W AL+    + G+ + 
Sbjct: 370 ---HGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQM 426

Query: 218 AKEL---FKSTKDKNTGSYNAMISGFARFGRFEE---ARKLFNEMNDKDEITWSAIIDGY 271
           A  +     + K ++  SY  + + +A  G +E+    RKL   +  K    +S I  G 
Sbjct: 427 AVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGK 486

Query: 272 TKDGYYKEALEVFNEMQRDKI 292
               +Y  A E  + M RD+I
Sbjct: 487 GSHVFY--AGETSHPM-RDEI 504


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/620 (35%), Positives = 346/620 (55%), Gaps = 64/620 (10%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A K F+++ + NV  W +++R  ++        +L+ +M     + N  ++  +      
Sbjct: 97  ARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKNVVSWTVMLGGL-- 150

Query: 146 TEADKEGVQVHAHVVKNGL-----CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
                  +QV       GL       DV  +++ I  Y   G + +AR++ D+  + +VI
Sbjct: 151 -------IQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVI 203

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA----------- 249
            W  +I GY++ G ++ A++LF+   +KN  S+ AM+ G+ + GR EEA           
Sbjct: 204 SWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKA 263

Query: 250 --------------------RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                               R++F+++ +KD+ TWSA+I  Y + G+  EAL +F  MQR
Sbjct: 264 VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQR 323

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
           + ++     L  VL+ CASL +LD G  +H  + ++    D  + + L+ MY KCG L  
Sbjct: 324 EGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVK 383

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A ++F+    K++  WN++I G A HG  ++A+++F +M    M  D +TF  VLSAC++
Sbjct: 384 ARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSY 443

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
            G +  GL+    M+  Y ++P+ EHY C+VDLLGRAG + +A ++I  MP+E +A +W 
Sbjct: 444 TGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWG 503

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERG 515
           ALLGACR H  +   E   K LL++EP+N               R  DVA++R+ M+ + 
Sbjct: 504 ALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKK 563

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGS-HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           +  +PG S I+V   +H F  G  + HP++  I  ML+K+   L+  GY P+SS VL D+
Sbjct: 564 VSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDV 623

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           DEEEK  +  +HSE+LA+AFG +    G  IRV+KNLRVC DCHSA KLI+K+  R+II+
Sbjct: 624 DEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIIL 683

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF++G CSC D+W
Sbjct: 684 RDANRFHHFKDGFCSCRDYW 703



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 156/324 (48%), Gaps = 28/324 (8%)

Query: 165 CGDVHVK-SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           C  V +  +S I  YA  G +  AR++ D+     ++ WN+++ GY +      A+ LF 
Sbjct: 12  CTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFD 71

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              ++NT S+N +ISG+ +     EARK F+ M +++ ++W+A++ GY ++G   EA  +
Sbjct: 72  KMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETL 131

Query: 284 FNEMQRDKIKPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           F +M      P K V+S   +L     +  +D+   + D +       D V  T ++  Y
Sbjct: 132 FWQM------PEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGY 181

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            + GRL  A ++F++M  + V +W  MI G   +G+ D A +LF  M  +    + +++ 
Sbjct: 182 CQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWT 237

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL--GRAGYLAEAEEVISSM 459
            +L      G I+          +++   P      C   +L  G+ G +A+A +V   +
Sbjct: 238 AMLMGYTQGGRIEEA-------SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQI 290

Query: 460 PMEPNAAVWEALLGACRKHG-EVE 482
             E +   W A++    + G EVE
Sbjct: 291 -REKDDGTWSAMIKVYERKGFEVE 313


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/664 (35%), Positives = 360/664 (54%), Gaps = 62/664 (9%)

Query: 50   KQAHAVILKSGH-FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
            ++ HA +L++GH ++   VS  LV  +A  +    + A +VF  +   +   WN+++ A 
Sbjct: 402  REVHAHVLRAGHIYRKIAVSNGLVNMYA--KCGAIDKACRVFQLMEARDRISWNTIITAL 459

Query: 109  LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             ++      +  Y  M      P+ F   +   +C+       G Q+H   VK GL  D 
Sbjct: 460  DQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDT 519

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI-----------------DGYLK 211
             V ++ ++MY   G +++  +I +  S  DV+ WN+++                    +K
Sbjct: 520  SVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMK 579

Query: 212  CGDI-------------------EGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEE 248
             G +                   E  K+    + K    ++    NA++S +A+ G  + 
Sbjct: 580  SGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDS 639

Query: 249  ARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
              +LF+ M+  +D I+W+++I GY  +G+ +EA++    M   +        S VL ACA
Sbjct: 640  CERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACA 699

Query: 308  SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            S+ AL++G+ +H    R+ +  D V+ +ALVDMY+KCGR+D A KVF  M  K  F+WN+
Sbjct: 700  SVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNS 759

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            MI G A HG    A+E+F +MQ     PD +TF  VLSAC+HAG+++RGL     M+  Y
Sbjct: 760  MISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-Y 818

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR--KH-GEVEFG 484
            GI P +EHY C++DLLGRAG L + +E +  MPM+PN  +W  +L AC+  KH  +++ G
Sbjct: 819  GILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLG 878

Query: 485  ERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
                ++LLE+EPQN               R +D AK R  MK   +K   G S + +   
Sbjct: 879  TEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDG 938

Query: 531  IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
            +H F  GD SHP  KEIY  L  +I+K++  GY P +  VL D++EE KE   +YHSEKL
Sbjct: 939  VHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKL 998

Query: 591  AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
            A+AF    +  G  IR++KNLRVC DCH+A + IS++  R II+RD +R+HHF++GKCSC
Sbjct: 999  AVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSC 1058

Query: 651  NDFW 654
             D+W
Sbjct: 1059 GDYW 1062



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/485 (21%), Positives = 216/485 (44%), Gaps = 58/485 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H ++ K+    +  V   L+  + +       LA +VF++    ++  WN+++    +
Sbjct: 191 QVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAK 250

Query: 111 HNEPWRVISLYSEM----VGVDSKPNKFTY-----PTVFKACSITEADKEGVQVHAHVVK 161
             +     +L+  M     G++ +P + T+      T   +CS+   D    Q+   V+K
Sbjct: 251 RGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLD----QLFVRVLK 306

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           +G   D++V S+ +  +A  G +++A+ I     + + +  N LI G +K    E A E+
Sbjct: 307 SGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEI 366

Query: 222 FKSTKDK---NTGSYNAMISGFARF----------------------------------- 243
           F   +D    N  +Y  ++S  A F                                   
Sbjct: 367 FMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVN 426

Query: 244 -----GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
                G  ++A ++F  M  +D I+W+ II    ++GY + A+  +  M+++ I P  F 
Sbjct: 427 MYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFA 486

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
               L++CA LG L  G  +H    +  + +D  +  ALV MY +CGR+   W++F  M 
Sbjct: 487 AISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMS 546

Query: 359 MKEVFTWNAMIGGLA-MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
             +V +WN+++G +A       +++++F  M +  + P+++TF   L+A     +++ G 
Sbjct: 547 AHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGK 606

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           Q  + M + +G+  +      ++    ++G +   E + S M    +A  W +++     
Sbjct: 607 QIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIY 665

Query: 478 HGEVE 482
           +G ++
Sbjct: 666 NGHLQ 670



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 208/476 (43%), Gaps = 60/476 (12%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++K G   D +++  LV  +A    +  + A +VF+ +   N   W  ++   +   
Sbjct: 88  HLEVVKRGLTHDLFLANHLVNSYAKG--ARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 113 EPWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEG--VQVHAHVVKNGLCGDV 168
            P     L+  M+  G   +P  FT+ +V +AC  +  D+ G  VQVH  V K     + 
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 169 HVKSSGIQMYAC--FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            V ++ I MY     G    A+++ D     D+I WNAL+  Y K GD      LF++ +
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQ 265

Query: 227 DKNTG----------------SY----------------------------NAMISGFAR 242
             ++G                +Y                            +A++S FAR
Sbjct: 266 YDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFAR 325

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  +EA+ ++  + +++ +T + +I G  K  + + A E+F    RD           +
Sbjct: 326 HGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMG-ARDSAAVNVDTYVVL 384

Query: 303 LAACASLGALDQGIW----IHDHVKR-NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           L+A A     +QG+     +H HV R   I     +   LV+MYAKCG +D A +VF+ M
Sbjct: 385 LSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLM 444

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
           + ++  +WN +I  L  +G  + A+  +  M++  + P        LS+CA  G++  G 
Sbjct: 445 EARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAG- 503

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           Q L      +G+  +      +V + G  G ++E  E+ +SM    +   W +++G
Sbjct: 504 QQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIMG 558



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 125/538 (23%), Positives = 227/538 (42%), Gaps = 67/538 (12%)

Query: 14  LKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVK 73
           L+P E +  ++ T+ +     L +L+           Q    +LKSG   D YV   LV 
Sbjct: 273 LRPTEHTFGSLITATYLSSCSLGLLD-----------QLFVRVLKSGCSSDLYVGSALVS 321

Query: 74  CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-N 132
             A +R    + A  ++  + + N    N ++   ++         ++  M   DS   N
Sbjct: 322 --AFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAVN 377

Query: 133 KFTYPTVFKA----CSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYACFGCVNKA 187
             TY  +  A     +  +  ++G +VHAHV++ G +   + V +  + MYA  G ++KA
Sbjct: 378 VDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKA 437

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN-AMISG------- 239
            ++       D I WN +I    + G  E A   +   +  + G  N A ISG       
Sbjct: 438 CRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGL 497

Query: 240 -------------------------------FARFGRFEEARKLFNEMNDKDEITWSAII 268
                                          +   GR  E  ++FN M+  D ++W++I+
Sbjct: 498 GLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIM 557

Query: 269 DGY-TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
               +      E+++VF+ M +  + P K      LAA   L  L+ G  IH  + ++ +
Sbjct: 558 GVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGV 617

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFF 386
             D  +  AL+  YAK G +D   ++F  M   ++  +WN+MI G   +G   +A++   
Sbjct: 618 TEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVC 677

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M   +   D  TF+ VL+ACA    ++RG++   +  + + ++ +V     +VD+  + 
Sbjct: 678 LMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSH-LESDVVVESALVDMYSKC 736

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           G +  A +V  SM  + N   W +++    +HG    G +  +I  EM+      D V
Sbjct: 737 GRIDYASKVFHSMS-QKNEFSWNSMISGYARHG---LGRKALEIFEEMQESGESPDHV 790



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 23/264 (8%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD--K 291
           N +++ +A+  R + AR++F+ M  ++ ++W+ +I G+   G  ++A  +F  M R+   
Sbjct: 104 NHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPG 163

Query: 292 IKPRKFVLSCVLAACASLGA--LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC--GRL 347
            +P  F    VL AC   G   L   + +H  V +     +  +  AL+ MY  C  G  
Sbjct: 164 CRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPP 223

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE----KMRPDRITF--- 400
            +A +VF+   ++++ TWNA++   A  G A     LF  MQ +    ++RP   TF   
Sbjct: 224 ILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSL 283

Query: 401 --ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
             A  LS+C+  G++D+    L       G   ++     +V    R G L EA+++   
Sbjct: 284 ITATYLSSCS-LGLLDQ----LFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLG 338

Query: 459 MPMEPNAAVWEALLGAC--RKHGE 480
           +  E NA     L+     ++HGE
Sbjct: 339 LK-ERNAVTLNGLIAGLVKQQHGE 361



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 137/324 (42%), Gaps = 59/324 (18%)

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           D     +H  VVK GL  D+ + +  +  YA    ++ AR++ D     + + W  LI G
Sbjct: 81  DASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISG 140

Query: 209 YLKCGDIEGAKELFK-------------------------STKDK--------------- 228
           ++  G  E A  LF+                         S  D+               
Sbjct: 141 HVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTE 200

Query: 229 ---NTGSYNAMIS--GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              NT   NA+IS  G    G    A+++F+    +D ITW+A++  Y K G       +
Sbjct: 201 FTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTL 260

Query: 284 FNEMQRD----KIKPRK-----FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           F  MQ D    +++P +      + +  L++C SLG LDQ   +   V ++    D  +G
Sbjct: 261 FRAMQYDDSGIELRPTEHTFGSLITATYLSSC-SLGLLDQ---LFVRVLKSGCSSDLYVG 316

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           +ALV  +A+ G LD A  ++  +K +   T N +I GL      + A E+F    R+   
Sbjct: 317 SALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMG-ARDSAA 375

Query: 395 PDRITFACVLSACAHAGMIDRGLQ 418
            +  T+  +LSA A     ++GL+
Sbjct: 376 VNVDTYVVLLSAIAEFSTAEQGLR 399



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 16/173 (9%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  V +  +  D  L   LV+ YAK  RLD A +VF+ M  +   +W  +I G  + G 
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 378 ADDAIELFFKMQRE--KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
            +DA  LF  M RE    RP   TF  VL AC      D G   L +  Q++G+  + E 
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQ-----DSGPDRLGFAVQVHGLVSKTEF 201

Query: 436 YG------CIVDLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
                    ++ + G    G    A+ V  + P+  +   W AL+    K G+
Sbjct: 202 TSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVR-DLITWNALMSVYAKRGD 253


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/595 (34%), Positives = 331/595 (55%), Gaps = 23/595 (3%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            ELA ++  S  +PNV  WN+VL  C  H      + + + M+    +P+  T  ++ K+
Sbjct: 242 LELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKS 301

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            + T   + G+++H   ++N L  DV+  ++ + MYA  G ++ A+++LD     ++  W
Sbjct: 302 VANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTW 361

Query: 203 NALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN- 257
           N+L+ GY   G  + A EL +  K    D +  ++N +I+G++  G+  +A  L  ++  
Sbjct: 362 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 421

Query: 258 ---DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
                + ++W+++I G   +G Y+++    +EMQ+D ++P    +S +L ACA L    +
Sbjct: 422 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKK 481

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    R +   D V+ TAL+DMY+K G L  A  +FE ++ K +   NAM+ GLA+
Sbjct: 482 GKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAV 541

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG+  +AIELF  M    ++PD ITF  +L+AC   G++  G +    M+  YG+ P  E
Sbjct: 542 HGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTE 601

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +Y C+VDLL R GYL EA + I   P++P A+ W ALL  C  HG +   E   + L  +
Sbjct: 602 NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFIL 661

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP N              R  D+   ++  MK RG+ + PG S I +   IH F      
Sbjct: 662 EPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKP 721

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP+  EIY  L +++ ++K  GY P++S + +++ EEEKE     H+EKLAI +G I +D
Sbjct: 722 HPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSD 781

Query: 601 PG-ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              A +RV+KN R+C DCH   K IS +  R II+RD VR+HHF +GKCSCND+W
Sbjct: 782 ASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 185/400 (46%), Gaps = 47/400 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q H++ +++G  +D  V+  LV   A   R  +    L         +  +WN  + A L
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHV-AML 131

Query: 110 EHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              E W   I+++ EM       + +T   V  AC    A +EG  VHA+ +K  L  D 
Sbjct: 132 AEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLAL--DA 189

Query: 169 HVKSSGI--QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---- 222
           H    G    MYA    V  A ++LD      V+ WNA++    + G ++ A EL     
Sbjct: 190 HPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMS 249

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           +S  + N  ++N ++SG +R GR                                +EAL 
Sbjct: 250 RSGPEPNVATWNTVLSGCSRHGR-------------------------------DREALG 278

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           V   M +  ++P    +S +L + A+ G L  G+ IH    RN +  D   GTALVDMYA
Sbjct: 279 VVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYA 338

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCGRLD A KV + ++ + + TWN+++ G A  GR D A+EL   M++ ++ PD  T+  
Sbjct: 339 KCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNG 398

Query: 403 VLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIV 440
           +++  +  G   +  QA+  ++Q+   G+ P V  +  ++
Sbjct: 399 LITGYSMNG---QSSQAVLLLRQIKAAGVTPNVVSWTSLI 435



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 40/354 (11%)

Query: 235 AMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           A++   AR GR     +L +E  +   KD + W+  +    +   + EA+ VF EMQ   
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           +    +  + VL AC   GAL +G  +H +  + ++    ++   L  MYA+   +  A 
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAAT 211

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +V + M    V  WNA++   A  G  DDA+EL  +M R    P+  T+  VLS C+  G
Sbjct: 212 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 412 MIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAA 466
              R  +AL  +  M   G+ P+      ++  +   G L    E+        +EP+  
Sbjct: 272 ---RDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVY 328

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
              AL+    K G ++  +   K+L  +E +N               R D   ++ +LMK
Sbjct: 329 TGTALVDMYAKCGRLDCAQ---KVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 385

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +  +  +    +   NG+I    TG   + Q  +  L+L++I    K  G +PN
Sbjct: 386 KNRLDPD----ITTWNGLI----TGYSMNGQSSQAVLLLRQI----KAAGVTPN 427


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/610 (34%), Positives = 327/610 (53%), Gaps = 85/610 (13%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---------- 179
           KP+   Y T+ ++C  +   ++G +VH H+  +G    + + +  ++MYA          
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 180 ----------C-----------FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
                     C            G + +A+ + D   + D   W A+I GY++      A
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 219 KELFKSTK----------------------------------------DKNTGSYNAMIS 238
            ELF+  K                                        D +   ++A+  
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
            + + G  EEAR +F++M D+D +TW+A+ID Y +DG  KE  ++F ++ R  I+P +F 
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S VL ACA+  + + G  +H ++ R      +   +ALV MY+KCG +  A +VF++  
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP 366

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
             ++F+W ++I G A +G+ D+AI  F  + +   +PD ITF  VLSACAHAG++D+GL 
Sbjct: 367 QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLD 426

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               +++ YG+    +HY CI+DLL R+G   EAE +IS M M+P+  +W +LLG CR H
Sbjct: 427 YFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIH 486

Query: 479 GEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSM 524
           G ++  +R  + L E+EP+N                  +VAK+RK M +RG+   PG S 
Sbjct: 487 GNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSW 546

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           I +   +H F  GD SHP+ KEI   L K+ +++K EG+ P+++ VL D+++E+KE    
Sbjct: 547 IAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLS 606

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
           YHSEKLA+AFG I+T  G  I+V KNLR C DCH+A K ISK+  R IIVRD  R+H F 
Sbjct: 607 YHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFE 666

Query: 645 NGKCSCNDFW 654
           +G CSC D+W
Sbjct: 667 DGHCSCRDYW 676



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 166/372 (44%), Gaps = 49/372 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACS 144
           A  +F+ + + + F W +++   + H+ P   + L+  M   D SK NKFT  +   A +
Sbjct: 155 AKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAA 214

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                + G ++H ++++ GL  D  V S+   MY   G + +AR I D     D++ W A
Sbjct: 215 AVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTA 274

Query: 205 LIDGYLKCGDIEGAKELF---------------------------------------KST 225
           +ID Y + G  +   +LF                                       +  
Sbjct: 275 MIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG 334

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D  + + +A++  +++ G    A ++F E    D  +W+++I GY ++G   EA+  F 
Sbjct: 335 FDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFE 394

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKC 344
            + +   +P       VL+ACA  G +D+G+ + H   ++  +   A     ++D+ A+ 
Sbjct: 395 LLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARS 454

Query: 345 GRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQREKMRPDRITF 400
           G+ D A  +   M MK + F W +++GG  +HG    A  A E  F+++ E    +  T+
Sbjct: 455 GQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE----NPATY 510

Query: 401 ACVLSACAHAGM 412
             + +  A AGM
Sbjct: 511 VTLANIYATAGM 522



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 126/272 (46%), Gaps = 14/272 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  I+++G   D  V   L   +   +  + E A  +F+ +   ++  W +++    
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYG--KCGSIEEARHIFDKMVDRDIVTWTAMIDRYF 280

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +         L+++++    +PN+FT+  V  AC+   +++ G +VH ++ + G      
Sbjct: 281 QDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSF 340

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
             S+ + MY+  G +  A ++  +  + D+  W +LI GY + G  + A   F    KS 
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG 400

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA-----IIDGYTKDGYYKEA 280
              +  ++  ++S  A  G  ++    F+ + ++  +T +A     IID   + G + EA
Sbjct: 401 TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEA 460

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
             + ++M    +KP KF+ + +L  C   G L
Sbjct: 461 ENIISKMS---MKPDKFLWASLLGGCRIHGNL 489



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 128/283 (45%), Gaps = 15/283 (5%)

Query: 219 KELFKS-TKDK-------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           K  FKS TKD        N   ++  I    +  R +EA ++ ++++      +S +I  
Sbjct: 20  KTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQS 79

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             K    ++  +V   ++     P  F+L+ +L   A   +L     + D +    +C  
Sbjct: 80  CIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSW 139

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +    L+  YAK G L  A  +F+ M  ++ F+W AMI G   H R ++A+ELF  M+R
Sbjct: 140 NI----LISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKR 195

Query: 391 -EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            +  + ++ T +  L+A A    +  G +   Y+ +  G+D +   +  + D+ G+ G +
Sbjct: 196 SDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRT-GLDSDEVVWSALSDMYGKCGSI 254

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
            EA  +   M ++ +   W A++    + G  + G  L   LL
Sbjct: 255 EEARHIFDKM-VDRDIVTWTAMIDRYFQDGRRKEGFDLFADLL 296


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 330/595 (55%), Gaps = 23/595 (3%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            ELA ++  S  +PNV  WN+VL  C  H      + + + M+    +P+  T  ++ K+
Sbjct: 224 LELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKS 283

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            + T   + G+++H   ++N L  DV+  ++ + MYA  G ++ A+++ D     ++  W
Sbjct: 284 VANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTW 343

Query: 203 NALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN- 257
           N+L+ GY   G  + A EL +  K    D +  ++N +I+G++  G+  +A  L  ++  
Sbjct: 344 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 403

Query: 258 ---DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
                + ++W+++I G   +G Y+++    +EMQ+D ++P    +S +L ACA L    +
Sbjct: 404 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKK 463

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    R +   D V+ TAL+DMY+K G L  A  +FE ++ K +   NAM+ GLA+
Sbjct: 464 GKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAV 523

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG+  +AIELF  M    ++PD ITF  +L+AC   G++  G +    M+  YG+ P  E
Sbjct: 524 HGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTE 583

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +Y C+VDLL R GYL EA + I   P++P A+ W ALL  C  HG +   E   + L  +
Sbjct: 584 NYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRL 643

Query: 495 EPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           EP N              R  D+   ++  MK RG+ + PG S I +   IH F      
Sbjct: 644 EPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKP 703

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP+  EIY  L +++ ++K  GY P++S + +++ EEEKE     H+EKLAI +G I +D
Sbjct: 704 HPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSD 763

Query: 601 PG-ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              A +RV+KN R+C DCH   K IS +  R II+RD VR+HHF +GKCSCND+W
Sbjct: 764 ASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 145/299 (48%), Gaps = 44/299 (14%)

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGI--QMYACFGCVNKARQILDDGSKSDVICWNALID 207
           + G  VHA+ +K  L  D H    G    MYA    V  A ++LD      V+ WNA++ 
Sbjct: 155 RRGRAVHAYALKLAL--DAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVA 212

Query: 208 GYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
              + G ++ A EL     +S  + N  ++N ++SG +R GR                  
Sbjct: 213 CCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR------------------ 254

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
                         +EAL V   M +  ++P    +S +L + A+ G L  G+ IH    
Sbjct: 255 -------------DREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFL 301

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           RN +  D   GTALVDMYAKCGRLD A KVF+ ++ + + TWN+++ G A  GR D A+E
Sbjct: 302 RNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALE 361

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIV 440
           L   M++ ++ PD  T+  +++  +  G   +  QA+  ++Q+   G+ P V  +  ++
Sbjct: 362 LVELMKKNRLDPDITTWNGLITGYSMNG---QSSQAVLLLRQIKAAGVTPNVVSWTSLI 417



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 147/354 (41%), Gaps = 58/354 (16%)

Query: 235 AMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           A++   AR GR     +L +E  +   KD + W+  +    +   + EA+ VF EMQ   
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + PR+                 +G  +H +  + ++    ++   L  MYA+   +  A 
Sbjct: 152 V-PRR-----------------RGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAAT 193

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +V + M    V  WNA++   A  G  DDA+EL  +M R    P+  T+  VLS C+  G
Sbjct: 194 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 253

Query: 412 MIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAA 466
              R  +AL  +  M   G+ P+      ++  +   G L    E+        +EP+  
Sbjct: 254 ---RDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVY 310

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
              AL+    K G ++  +   K+   +E +N               R D   ++ +LMK
Sbjct: 311 TGTALVDMYAKCGRLDCAQ---KVFDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 367

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +  +  +    +   NG+I    TG   + Q  +  L+L++I    K  G +PN
Sbjct: 368 KNRLDPD----ITTWNGLI----TGYSMNGQSSQAVLLLRQI----KAAGVTPN 409


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 322/585 (55%), Gaps = 21/585 (3%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A + F S        +N +L    + + P R+      +      P+  +Y T+  +C  
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADA-RRLFDSIPHPDAVSYNTLL-SCHF 83

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
              D +G      V       DV   ++ +   +  G + +A  +       + + WNA+
Sbjct: 84  ACGDIDGAW---RVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAM 140

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTG-SYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           +      GD+  A+ LF++  +K     + AM+SG+   G  ++A + F  M  ++ ++W
Sbjct: 141 VAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSW 200

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           +A++ GY K+    +AL VF  M  D I +P    LS VL  C++L AL  G  +H    
Sbjct: 201 NAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCM 260

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +  +     +GT+L+ MY KCG LD A K+F++M  K++  WNAMI G A HG    AI+
Sbjct: 261 KLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIK 320

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF KM+ E + PD IT   VL+AC H G+ D G+Q    MQ+ Y I+P+V+HY C+VDLL
Sbjct: 321 LFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLL 380

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN----- 498
            RAG L  A  +I SMP EP+ + +  LL ACR +  +EF E   + L+E +PQN     
Sbjct: 381 CRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYV 440

Query: 499 ---------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                     R DDV+++R+ MK+  +   PG S +++ GV HEFR+ D  HPQ+  I+ 
Sbjct: 441 QLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHD 500

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
            L ++ + +K  GYSP+    L D++E  K      HSEKLAIAFG I+T PG T+R+ K
Sbjct: 501 KLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFK 560

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           NLR+C DCH+A KLISK+  R+II+RD  R+HHFR G CSC D+W
Sbjct: 561 NLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 142/304 (46%), Gaps = 50/304 (16%)

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARF---GRFEEARKLFNE--------------- 255
           D+ GA+E F ST+ K T +YN +++G+A+    GR  +AR+LF+                
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 256 ----------------MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
                           M  +D  +W+ ++ G +K+G  +EA  +F  M      P +  +
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM------PARNAV 135

Query: 300 S--CVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           S   ++AA AS G +       +++ RN+    DA+L TA+V  Y   G +  A + F  
Sbjct: 136 SWNAMVAARASSGDMGAA----ENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRA 191

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITFACVLSACAHAGMIDR 415
           M ++ + +WNA++ G   + RA DA+ +F  M  + + +P+  T + VL  C++   +  
Sbjct: 192 MPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGF 251

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G Q   +  ++  +   +     ++ +  + G L +A ++   M  + +   W A++   
Sbjct: 252 GRQVHQWCMKL-PLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMISGY 309

Query: 476 RKHG 479
            +HG
Sbjct: 310 AQHG 313



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVF 140
           N + A++ F ++   N+  WN+V+   ++++     + ++  MV     +PN  T  +V 
Sbjct: 181 NVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVL 240

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             CS   A   G QVH   +K  L   + V +S + MY   G ++ A ++ D+    D++
Sbjct: 241 LGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIV 300

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNT--------GSYNAMI-SGFARFGR--FEEA 249
            WNA+I GY + G    A +LF+  KD+              A I +G   FG   FE  
Sbjct: 301 AWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETM 360

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++ +N     D   +S ++D   + G  + A+ + + M     +P       +L AC
Sbjct: 361 QEAYNIEPQVDH--YSCMVDLLCRAGLLERAVNMIHSM---PFEPHPSAYGTLLTAC 412


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 330/583 (56%), Gaps = 41/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF ++ +     WN+++   +        ++L  +M  +  + +  TY T+  AC+ 
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             + + G Q+HA+++KN L  +               C++ +               NAL
Sbjct: 302 VGSFQMGKQMHAYILKNELNPNHSF------------CLSVS---------------NAL 334

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y K   ++ A+++F +   +N  ++NA++SG+   GR EEA+  F EM  K+ +T +
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLT 394

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I G  ++G+  E L++F +M+ D  +P  F  +  L AC+ LGAL+ G  +H  +   
Sbjct: 395 VMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL 454

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
                  +G A++ MYAKCG ++ A  VF  M   ++ +WN+MI  L  HG    AIELF
Sbjct: 455 GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M +E + PDRITF  VL+AC+HAG++++G      M + YGI P  +HY  +VDL  R
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCR 574

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG  + A  VI SMP +P A VWEALL  CR HG ++ G    + L ++ PQN       
Sbjct: 575 AGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLL 634

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   R +DVAK+RKLM+++ ++  P  S I+V   +H F   D  HP+V  +Y  L
Sbjct: 635 SNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYL 694

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++  ++K  GY P++  VL D++ E+KE A   HSEKLA+ FG +   P AT+RV KN+
Sbjct: 695 EQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNI 754

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH+A K +SKV +R+IIVRDR R+HHF+NG CSC D+W
Sbjct: 755 RICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 197/448 (43%), Gaps = 82/448 (18%)

Query: 80  FSNFELALKVFNS--VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
             N EL  ++FN   ++  +   +N+++     + +    + L+  M   D +P+ FT+ 
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 138 TVFKACSITEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           +V  A  +   +++   Q+H  VVK G+                 GCV+ +         
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGM-----------------GCVSSS--------- 185

Query: 197 SDVICWNALIDGYLK--------CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                 NAL+  Y+K        C  +  A++LF     ++  ++  MI+G+ R      
Sbjct: 186 ----VLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNG 241

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR++F  M +     W+A+I GY   G ++EAL +  +M+   I+      + +++ACA+
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 309 LGALDQGIWIHDHVKRN------SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           +G+   G  +H ++ +N      S C+   +  AL+ +Y K  ++D A K+F  M ++ +
Sbjct: 302 VGSFQMGKQMHAYILKNELNPNHSFCLS--VSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 363 FTWNA-------------------------------MIGGLAMHGRADDAIELFFKMQRE 391
            TWNA                               MI GLA +G  D+ ++LF +M+ +
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
              P    FA  L+AC+  G ++ G Q    +  + G +  +     ++ +  + G +  
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEA 478

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHG 479
           AE V  +MP   +   W +++ A  +HG
Sbjct: 479 AESVFVTMP-SVDLVSWNSMIAALGQHG 505



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 176/423 (41%), Gaps = 95/423 (22%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VHAH++ +G     H  +  ++MY     V  ARQ+ ++    D I    LI  Y   G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 215 IEGAKELFKSTK--DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           +E  +E+F  T    +++  YNAMI+G+A  G                        DG++
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNG------------------------DGHS 130

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA-SLGALDQGIWIHDHVKRNSI-CVD 330
                  ALE+F  M+RD  +P  F  + VL+A    +G   Q   +H  V +  + CV 
Sbjct: 131 -------ALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVS 183

Query: 331 AVLGTALVDMYAK--------CGRLDMAWKVFEDMK----------------------MK 360
           + +  AL+ +Y K        C  +  A K+F++M                        +
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 361 EVF---------TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           EVF          WNAMI G    G   +A+ L  KM+   ++ D IT+  ++SACA+ G
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGC------IVDLLGRAGYLAEAEEVISSMPMEPNA 465
               G Q   Y+ +   ++P   H  C      ++ L  +   + EA ++  +MP+  N 
Sbjct: 304 SFQMGKQMHAYILK-NELNP--NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NI 359

Query: 466 AVWEALLGACRKHGEVE-----FGERLGKILLEME------PQNRRCDDVAKMRKLMKER 514
             W A+L      G +E     F E   K LL +        QN   D+  K+ K M+  
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 515 GIK 517
           G +
Sbjct: 420 GFE 422


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/489 (41%), Positives = 297/489 (60%), Gaps = 16/489 (3%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG-AKELFKSTKDKNTGSY-NAMISG 239
           G V+ +R++ +   + +V+ W A+I  Y++ G+ +  A ELF      +     N++IS 
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISM 68

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +AR GR E+ARK F+ + +K+ ++++AI+DGY K+   +EA  +FNE+    I    F  
Sbjct: 69  YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 128

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           + +L+  AS+GA+ +G  IH  + +     +  +  AL+ MY++CG ++ A++VF +M+ 
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 188

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           + V +W +MI G A HG A  A+E+F KM     +P+ IT+  VLSAC+H GMI  G + 
Sbjct: 189 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 248

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M + +GI P +EHY C+VDLLGR+G L EA E I+SMP+  +A VW  LLGACR HG
Sbjct: 249 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 308

Query: 480 EVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMI 525
             E G    +++LE EP +               +  DV K+RK MKER +    G S I
Sbjct: 309 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 368

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           +V   +H F  G+ SHPQ  +IY  L ++  K+K  GY P++  VL DI+EE+KE     
Sbjct: 369 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQ 428

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEK+A+AFG I+T     IR+ KNLRVC DCH+A K IS    R+I+VRD  R+HH +N
Sbjct: 429 HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 488

Query: 646 GKCSCNDFW 654
           G CSCND+W
Sbjct: 489 GVCSCNDYW 497



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 124/327 (37%), Gaps = 66/327 (20%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLYSEMVGVDS----------------- 129
           KVF  + + NV  W +++ A ++  E     I L+ +M+                     
Sbjct: 16  KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSGRM 75

Query: 130 -----------KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
                      + N  +Y  +    +     +E   +   +   G+       +S +   
Sbjct: 76  EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 135

Query: 179 ACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           A  G + K  QI    L  G KS+    NALI  Y +CG+IE A ++F   +D+N  S+ 
Sbjct: 136 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWT 195

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           +MI+GFA+ G                               +   ALE+F++M     KP
Sbjct: 196 SMITGFAKHG-------------------------------FATRALEMFHKMLETGTKP 224

Query: 295 RKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
            +     VL+AC+ +G + +G    +   K + I         +VD+  + G L  A + 
Sbjct: 225 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 284

Query: 354 FEDMK-MKEVFTWNAMIGGLAMHGRAD 379
              M  M +   W  ++G   +HG  +
Sbjct: 285 INSMPLMADALVWRTLLGACRVHGNTE 311



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 14/258 (5%)

Query: 67  VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG 126
           V  +L+  +A  R    E A K F+ + + N+  +N+++    ++ +      L++E+  
Sbjct: 61  VGNSLISMYA--RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 118

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
                + FT+ ++    +   A  +G Q+H  ++K G   +  + ++ I MY+  G +  
Sbjct: 119 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 178

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFAR 242
           A Q+ ++    +VI W ++I G+ K G    A E+F    ++    N  +Y A++S  + 
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 238

Query: 243 FGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
            G   E +K FN M  +  I      ++ ++D   + G   EA+E  N M    +     
Sbjct: 239 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADAL 295

Query: 298 VLSCVLAACASLGALDQG 315
           V   +L AC   G  + G
Sbjct: 296 VWRTLLGACRVHGNTELG 313


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/625 (35%), Positives = 342/625 (54%), Gaps = 51/625 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +K+ H    + G   D +V   L+  HA  +    E A +VF+ +   +V  W S+   
Sbjct: 182 RVKEVHDDATRCGVMSDVFVGNALI--HAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 239

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            ++   P + + ++ EM     KPN  T  ++  AC+  +  K G ++H   V++G+   
Sbjct: 240 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMV-- 297

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                  + ++ C                      +AL+  Y KC  +  A+ +F     
Sbjct: 298 -------VNLFVC----------------------SALVSLYAKCLSVREARMVFDLMPH 328

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEV 283
           ++  S+N +++ + +   +E+   LF +M+      DE TW+A+I G  ++G  +EA+E+
Sbjct: 329 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 388

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F +MQ+   KP +  +S +L AC+    L  G  IH +V R+    D    TAL+ MYAK
Sbjct: 389 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 448

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG L+++  VF+ M+ K+V  WN MI   AMHG   +A+ LF KM   +++P+ +TF  V
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LS C+H+ +++ G+Q    M + + ++P+  HY C+VD+  RAG L EA + I  MPMEP
Sbjct: 509 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 568

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRK 509
            A+ W ALL ACR +  VE  +   K L E+EP N              +   + +++R 
Sbjct: 569 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 628

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LMKERGI   PG S + V   +H F  GD S+ +  +IY  L +++EK+KM GY P++  
Sbjct: 629 LMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDY 688

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL DID+EEK  +   HSEKLA+AFG +N +  +TIRV KNLR+C DCH+A K +SKV  
Sbjct: 689 VLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVG 748

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+VRD +R+HHF+NG CSC D W
Sbjct: 749 VIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 76/385 (19%)

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           H+    I++    G  N+ARQ+ D+  + D    + LI      G    A +++ S +++
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 229 NTGS---------------------------------------YNAMISGFARFGRFEEA 249
                                                       NA+I  + +    E A
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 218

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R++F+++  +D ++W+++   Y K G+ ++ ++VF EM    +KP    +S +L ACA L
Sbjct: 219 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 278

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF------ 363
             L  G  IH    R+ + V+  + +ALV +YAKC  +  A  VF+ M  ++V       
Sbjct: 279 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 338

Query: 364 -----------------------------TWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
                                        TWNA+IGG   +GR+++A+E+F KMQ+   +
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 398

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ IT + +L AC+ +  +  G +   Y+ + + +  ++     ++ +  + G L  +  
Sbjct: 399 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRN 457

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V   M    +   W  ++ A   HG
Sbjct: 458 VFDMM-RRKDVVAWNTMIIANAMHG 481



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F  AR+LF+ +   D  T S +I   T  G   EA+++++ +Q   IKP   V     
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            ACA  G   +   +HD   R  +  D  +G AL+  Y KC  ++ A +VF+D+ +++V 
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W ++       G     +++F +M    ++P+ +T + +L ACA    +  G +   + 
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 291

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            + +G+   +     +V L  +   + EA  V   MP   +   W  +L A  K+ E E 
Sbjct: 292 VR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTAYFKNKEYEK 349

Query: 484 GERLGKILLEMEPQNRRCDD 503
           G  L    L+M     R D+
Sbjct: 350 GFSL---FLKMSRDGVRADE 366


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/631 (35%), Positives = 339/631 (53%), Gaps = 25/631 (3%)

Query: 47  QHLKQA-HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           Q L +A HA  + SG  +D +V+ +L+  H+  R      A  VF+ + + NV  W++++
Sbjct: 33  QPLARALHAAAVVSGLAEDPFVASSLL--HSYIRLGATGAARSVFDRMPEKNVVGWSALI 90

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
                  +      L  +M     +PN  T+  +    + +    + V     +   G  
Sbjct: 91  AGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFF 150

Query: 166 GDVHVKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            D    S  +        V+  +Q+    +  G + D     ALID Y KCG  +    +
Sbjct: 151 PDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRV 210

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM----NDKDEITWSAIIDGYTKDGYY 277
           F  +   +  S NA+++G +R  +  EA  LF E      + + ++W++I+    ++G  
Sbjct: 211 FHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRD 270

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            EA+++F  MQ   ++P    + CVL A A++ AL  G   H    R     D  +G+AL
Sbjct: 271 LEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSAL 330

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMYAKCG+   A  +F+ M  + V +WNAMIGG AMHG A +A++LF  MQ+ K +PD 
Sbjct: 331 VDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDL 390

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +TF CVL AC+ AG+ + G +    MQQ +GI P +EHY C+V LLGR+G L EA ++I+
Sbjct: 391 VTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLIN 450

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDD 503
            MP EP++ +W +LLG+CR +G V   E   + L ++EP N              +  D 
Sbjct: 451 EMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDG 510

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           V ++R  MK  G+K   G S I++   +H    GD SHP +  I   L ++  ++   G+
Sbjct: 511 VNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGF 570

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
           +P+   VL D++E+EK+     HSEKLA+A G I+T PG  +RVIKNLR+C DCH A K 
Sbjct: 571 APSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKF 630

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IS   +R+I VRD  R+HHF++GKCSC D+W
Sbjct: 631 ISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 162/397 (40%), Gaps = 67/397 (16%)

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
           SLY  +  V   P+    P+  K+C    A      +HA  V +GL  D  V SS +  Y
Sbjct: 6   SLYHFLRHVSFPPDPHLLPSALKSC---PAQPLARALHAAAVVSGLAEDPFVASSLLHSY 62

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
              G    AR + D   + +V+ W+ALI GY   GD E A                    
Sbjct: 63  IRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAA-------------------- 102

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
               +G  E+ R    E N    ITW+ ++ G  + G   +A+     M  +   P    
Sbjct: 103 ----WGLLEQMRSAGVEPN---VITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATG 155

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           +SC L+A   +  +  G  +H +V +    +DA + TAL+DMY KCGR D   +VF +  
Sbjct: 156 VSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESS 215

Query: 359 MKEVFTWNAMIGGLA-----------------------------------MHGRADDAIE 383
             +V + NA++ GL+                                    +GR  +A++
Sbjct: 216 HMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVD 275

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF  MQ   + P+ +T  CVL A A+   +  G  A  +  +  G   +V     +VD+ 
Sbjct: 276 LFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLR-KGFLHDVYVGSALVDMY 334

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            + G    A  +  +MP   N   W A++G    HG+
Sbjct: 335 AKCGKARHARTIFDAMPSR-NVVSWNAMIGGYAMHGD 370


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/661 (34%), Positives = 356/661 (53%), Gaps = 58/661 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H   +K G  +D  V  +LV  +  +   + E   +VF+ +   NV  W S+L    
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+S+M     KPN FT+  V    +   A ++GVQVH  V+K+GL   + 
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------DIEG 217
           V +S + MY+    V+ A+ + D     + + WN++I G++  G             +EG
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 218 AK---------------------------ELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            K                           ++ K+  D +     A++  +++    ++A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 251 KLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACAS 308
           KLF  M+  ++ ++W+AII GY ++G    A+ +F +M+R++ ++P +F  S VL ACA+
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 309 -LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
              +++QG   H    ++       + +ALV MYAK G ++ A +VF+    +++ +WN+
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G A HG    ++++F +M+ + +  D ITF  V+SAC HAG+++ G +    M + Y
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDY 529

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P +EHY C+VDL  RAG L +A ++I+ MP    A +W  LL ACR H  V+ GE  
Sbjct: 530 HIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELA 589

Query: 488 GKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + L+ ++PQ+                  + AK+RKLM  + +K   G S I+V      
Sbjct: 590 AEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFS 649

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SHPQ   IYL L+++  +LK  GY P++  VL D++EE KE     HSE+LAIA
Sbjct: 650 FMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIA 709

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I T PG  I+++KNLRVC DCH+  KLISK+  RDI+VRD  R+HHF+ G CSC D+
Sbjct: 710 FGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDY 769

Query: 654 W 654
           W
Sbjct: 770 W 770



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 47/409 (11%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V K C        G QVH   +K G   DV V +S + MY     V    ++ D+    +
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFE------- 247
           V+ W +L+ GY + G  E A +LF   +      N  ++ A++ G A  G  E       
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 248 ----------------------------EARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                       +A+ +F+ M +++ ++W+++I G+  +G   E
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE 277

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A E+F  M+ + +K  + + + V+  CA++  +     +H  V +N    D  + TAL+ 
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV 337

Query: 340 MYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDR 397
            Y+KC  +D A+K+F  M  ++ V +W A+I G   +GR D A+ LF +M+RE+ + P+ 
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNE 397

Query: 398 ITFACVLSACAH-AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            TF+ VL+ACA     +++G Q         G    +     +V +  + G +  A EV 
Sbjct: 398 FTFSSVLNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVF 456

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
               ++ +   W +++    +HG    G++  KI  EM  +N   D + 
Sbjct: 457 KRQ-VDRDLVSWNSMISGYAQHG---CGKKSLKIFEEMRSKNLELDGIT 501



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 129/246 (52%), Gaps = 3/246 (1%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           +++LF+E   +     + ++  ++++   KEAL +F  ++R         LSCVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L     G  +H    +     D  +GT+LVDMY K   ++   +VF++M++K V +W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G   +G  + A++LF +MQ E ++P+  TFA VL   A  G +++G+Q  T M    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT-MVIKSG 223

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG-EVEFGERL 487
           +D  +     +V++  ++  +++A+ V  SM    NA  W +++     +G ++E  E  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 488 GKILLE 493
            ++ LE
Sbjct: 283 YRMRLE 288


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 341/624 (54%), Gaps = 54/624 (8%)

Query: 51   QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            + H  ++K G   D Y+   L+  +   R    E A +VF+ +  P   +WN  +   L+
Sbjct: 544  EIHGCLIKRGFDLDVYLRCALMNFYG--RCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 601

Query: 111  HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD--KEGVQVHAHVVKNGLCGDV 168
              +  + + L+ +M     K    T   V +A SI+E      G + H +V++NG   DV
Sbjct: 602  SEKLQKGVELFRKMQFSFLKAETATIVRVLQA-SISELGFLNMGKETHGYVLRNGFDCDV 660

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +V +S                               LID Y+K   +  A+ +F + K++
Sbjct: 661  YVGTS-------------------------------LIDMYVKNHSLTSAQAVFDNMKNR 689

Query: 229  NTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVF 284
            N  ++N+++SG++  G FE+A +L N+M  +    D +TW+ +I GY   G  KEAL  F
Sbjct: 690  NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFF 749

Query: 285  NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             +MQ++ + P    ++C+L ACASL  L +G  IH    RN    D  + TAL+DMY+K 
Sbjct: 750  AQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKS 809

Query: 345  GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
              L  A KVF  ++ K + +WN MI G A+ G   +AI +F +MQ+  + PD ITF  +L
Sbjct: 810  SSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALL 869

Query: 405  SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            SAC ++G+I  G +    M   Y I P +EHY C+VDLLGRAGYL EA ++I +MP++P+
Sbjct: 870  SACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 929

Query: 465  AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
            A +W ALLG+CR H  ++F E   K L ++EP N               R +D+  +R+L
Sbjct: 930  ATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLREL 989

Query: 511  MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
            M   G++     S I +N  +H F + +  HP   +IY  L +++ ++K  GY P+ + V
Sbjct: 990  MGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCV 1049

Query: 571  LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
              ++DE EK+     H+EKLAI +G I    G  IRVIKN R+C DCHSA K IS V  R
Sbjct: 1050 YQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKAR 1109

Query: 631  DIIVRDRVRYHHFRNGKCSCNDFW 654
            ++ +RD VR+HHFR GKCSCNDFW
Sbjct: 1110 ELFLRDGVRFHHFREGKCSCNDFW 1133



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 7/272 (2%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY-TKDGYYKEALEVFNEMQRDKIKP 294
           +IS +  FG F  A  +F     ++ + W++ ++ + +  G     LEVF E+    +  
Sbjct: 462 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 521

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
              V S  L  C  +  +  G+ IH  + +    +D  L  AL++ Y +C  L+ A +VF
Sbjct: 522 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 581

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC-AHAGMI 413
            +M   E   WN  I       +    +ELF KMQ   ++ +  T   VL A  +  G +
Sbjct: 582 HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFL 641

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G +   Y+ +  G D +V     ++D+  +   L  A+ V  +M    N   W +L+ 
Sbjct: 642 NMGKETHGYVLR-NGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIFAWNSLVS 699

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
                G  E   RL   L +ME +  + D V 
Sbjct: 700 GYSFKGMFEDALRL---LNQMEKEGIKPDLVT 728


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 296/476 (62%), Gaps = 15/476 (3%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKL 252
           G+  D+   NAL   Y  CGD+   + +F    + ++  ++NA+++G+ R G    AR++
Sbjct: 160 GAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREV 219

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F EM  +DE++WS ++ GY K+G    AL VF +M    ++  +  +   L+A A +G L
Sbjct: 220 FEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLL 279

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
           + G ++H+ V+R  + V   +G ALVDM++KCG + +A +VF+ M  ++VF WNAMI GL
Sbjct: 280 EHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGL 339

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A HG   DA+ELF++   E + P  ITF  VL+AC+  G++  G +    M   Y I+PE
Sbjct: 340 ASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPE 399

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           +EHYGC+VDLLGRAG ++EA E+I  M + P+  +W  +L AC+ H  V+ G  +G  L+
Sbjct: 400 MEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLI 459

Query: 493 EMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
           E+EP +              ++ D+V ++RKLM  RG   + G S+++  G +H+F  GD
Sbjct: 460 ELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGD 519

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
             H    +IY ML  I  +L   GY P+ S VL DI +EEK  A K HSE+LAIA+GFI 
Sbjct: 520 MDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIV 579

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T+ G+ IR++KNL+VC DCH  +K+++KVF R+IIVRD  R+HH + GKCSC D+W
Sbjct: 580 TEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 146/357 (40%), Gaps = 48/357 (13%)

Query: 4   KVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHF 62
           +V    LP  L P  +   N+ +  F   +I + L+   H +   L    HA+ +K+G  
Sbjct: 104 RVLPHPLPLRLFPN-LPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAA 162

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHK-PNVFVWNSVL---------RACLEHN 112
            D YV   L   H      +      VF+ + +  +V  WN+VL         RA  E  
Sbjct: 163 GDLYVRNALT--HFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVF 220

Query: 113 E--PWR--------------------VISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
           E  P R                     + ++ +MV    + N+    T   A +     +
Sbjct: 221 EEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLE 280

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G  VH  V + G+   V+V ++ + M++  GCV  AR++ D   + DV  WNA+I G  
Sbjct: 281 HGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLA 340

Query: 211 KCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT--- 263
             G  + A ELF    D+       ++  +++  +R G   E R+ F  M DK  I    
Sbjct: 341 SHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEM 400

Query: 264 --WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
             +  ++D   + G   EA+E+   M    I P   +   VL+AC +   +D GI +
Sbjct: 401 EHYGCMVDLLGRAGLVSEAIELIEGMH---IAPDPVLWGTVLSACKTHNLVDLGITV 454


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/715 (33%), Positives = 367/715 (51%), Gaps = 90/715 (12%)

Query: 28  EFSQKTILDILNTKCHTSWQHLK---QAHAVILKSGHF---QDHYVSGTLVKCHANSRFS 81
           E S  T++ +L    H + Q  +   +AHA  LK G     ++ +    L+  +A  R  
Sbjct: 149 EVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYA--RLG 206

Query: 82  NFELALKVFNS--VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
             + A ++F S      ++  WN+++   ++       + +  +MV +  +P+  T+ + 
Sbjct: 207 LVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASA 266

Query: 140 FKACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGIQMYACFGCVNKARQILD--DGSK 196
             ACS  E    G +VHA V+K+  L  +  V S+ + MYA    V+ AR++ D      
Sbjct: 267 LPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHG 326

Query: 197 SDVICWNALIDGYLKCGDI-EGAKELF--------------------------------- 222
             +  WNA+I GY + G + E A ELF                                 
Sbjct: 327 RQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKE 386

Query: 223 -------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                  K     N    NA++  +AR GR +EA  +F  ++ +D ++W+ +I G    G
Sbjct: 387 AVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQG 446

Query: 276 YYKEALEVFNEMQR--------------------DKIKPRKFVLSCVLAACASLGALDQG 315
              EA ++  EMQ                      +  P    L  +L  CA L A  +G
Sbjct: 447 LISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARG 506

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             IH +  R+++  D  +G+ALVDMYAKCG L +A  VF+ +  + V TWN +I    MH
Sbjct: 507 KEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMH 566

Query: 376 GRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           G  D+A+ LF +M    +  P+ +TF   L+AC+H+G++DRGL+    M++ YG +P   
Sbjct: 567 GLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPY 626

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            + C+VD+LGRAG L EA  +ISSM P E   + W  +LGACR H  V+ G    + L E
Sbjct: 627 LHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFE 686

Query: 494 MEPQNRR-----C---------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EP         C         ++  ++R +M++RG+   PG S I+++G IH F  G+ 
Sbjct: 687 LEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGES 746

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           +HP+  +++  +  + E+++ EGY P++S VL D+DE EK    +YHSEKLAIAFG +  
Sbjct: 747 AHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRA 806

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PGATIRV KNLRVC DCH A K IS++  R+I++RD  R+HHFR+G CSC D+W
Sbjct: 807 PPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 15/261 (5%)

Query: 234 NAMISGFARFGRFEEARKLF--NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           NA+++ +AR G  + A  LF     + +D ++++++I        +  AL+   +M  D 
Sbjct: 89  NALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH 148

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWI----HDHVKRNSIC---VDAVLGTALVDMYAKC 344
            +   F L  VL AC+ L   DQG  +    H    ++       +     AL+ MYA+ 
Sbjct: 149 -EVSSFTLVSVLLACSHLA--DQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARL 205

Query: 345 GRLDMAWKVF--EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           G +D A ++F      + ++ TWN MI  L   GR ++A+++ + M    +RPD +TFA 
Sbjct: 206 GLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFAS 265

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
            L AC+   ++  G +   ++ +   +         +VD+      ++ A  V   +P  
Sbjct: 266 ALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEH 325

Query: 463 P-NAAVWEALLGACRKHGEVE 482
                +W A++    +HG ++
Sbjct: 326 GRQLGMWNAMICGYAQHGGMD 346


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/498 (40%), Positives = 298/498 (59%), Gaps = 15/498 (3%)

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           +S I  YA    V+ AR++ +     + + W A++ GY + G I  A ELFK+   K   
Sbjct: 206 TSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVA 265

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           + N MI GF   G   +AR +F++M +KD+ TWSA+I  Y + G+  EAL +F+ MQR+ 
Sbjct: 266 ACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREG 325

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P    +  +L+ C SL +LD G  +H  + R+   +D  + + L+ MY KCG L    
Sbjct: 326 VRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGK 385

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VF+    K++  WN++I G A HG  + A+E+F +M      PD ITF  VLSAC + G
Sbjct: 386 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTG 445

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            +  GL+    M+  Y +D + EHY C+VDLLGRAG L EA  +I +MP+E +A VW AL
Sbjct: 446 KVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 505

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           L ACR H  ++  E   K LL++EP +               R  DVA++RK M+ R + 
Sbjct: 506 LSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVS 565

Query: 518 TNPGSSMIDVNGVIHEFR-TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
            +PG S I+V+  +H F   G  SHP+ + I   L+K+   L+  GY P+ S V+ D+DE
Sbjct: 566 KSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDE 625

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           E+K  + ++HSEK+A+A+G +    G  IRV+KNLRVC DCHSA KLI++V  R+II+RD
Sbjct: 626 EDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRD 685

Query: 637 RVRYHHFRNGKCSCNDFW 654
             R+HHF++G CSC DFW
Sbjct: 686 ANRFHHFKDGLCSCRDFW 703



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 48/376 (12%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  +A  G +++AR I DD     V  WNA++ GY        A++LF    ++NT S+N
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWN 82

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            ++SG+ + G   EARK+F++M +++ ++W++++ GY ++G   EA  +F  M      P
Sbjct: 83  GLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM------P 136

Query: 295 RKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            K V+S   +L      G +D+   + D +       D V  T ++      GRL  A +
Sbjct: 137 EKNVVSWTVMLGGLIEDGRVDEARRLFDMIP----VKDVVASTNMIGGLCSEGRLSEARE 192

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHA 410
           +F++M  + V  W +MI G AM+ + D A +LF  M      PD+  +T+  +L     +
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PDKNEVTWTAMLKGYTRS 246

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G I+   +    M     + P     G I+   G  G + +A  V   M  E +   W A
Sbjct: 247 GRINEAAELFKAMP----VKPVAACNGMIMG-FGLNGEVGKARWVFDQMK-EKDDGTWSA 300

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVN 528
           L+    + G             E+E           +  LM+  G++ N  S  S++ V 
Sbjct: 301 LIKIYERKG------------FELE--------ALALFSLMQREGVRPNFPSIISILSVC 340

Query: 529 GVIHEFRTGDGSHPQV 544
           G +     G   H Q+
Sbjct: 341 GSLASLDHGRQVHSQL 356



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 191/441 (43%), Gaps = 27/441 (6%)

Query: 68  SGTLVKCHAN--SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV 125
           S  + +C  +  +R    + A  +F+ +    V  WN+++     +  P     L+ +M 
Sbjct: 15  SAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP 74

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
             ++           K   I+EA K        V       +V   +S ++ Y   G ++
Sbjct: 75  ERNTISWNGLVSGYVKNGMISEARK--------VFDKMPERNVVSWTSMVRGYVQEGLID 126

Query: 186 KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGR 245
           +A  +     + +V+ W  ++ G ++ G ++ A+ LF     K+  +   MI G    GR
Sbjct: 127 EAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGR 186

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
             EAR++F+EM  ++ + W+++I GY  +     A ++F E+  DK    +   + +L  
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLF-EVMPDK---NEVTWTAMLKG 242

Query: 306 CASLGALDQGIWIHDH--VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
               G +++   +     VK  + C   ++G  L       G +  A  VF+ MK K+  
Sbjct: 243 YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGL------NGEVGKARWVFDQMKEKDDG 296

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           TW+A+I      G   +A+ LF  MQRE +RP+  +   +LS C     +D G Q  + +
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQL 356

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            + +  D ++     ++ +  + G L   + V        +  +W +++    +HG   F
Sbjct: 357 VRSH-FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFS-SKDIVMWNSIIAGYAQHG---F 411

Query: 484 GERLGKILLEMEPQNRRCDDV 504
           GE+  ++  EM       D++
Sbjct: 412 GEKALEVFHEMFSSGAAPDEI 432



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 152/363 (41%), Gaps = 79/363 (21%)

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           IS FAR G+ + AR +F+++  K   +W+AI+ GY  +    EA ++F++M         
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP-------- 74

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
                                     +RN+I  +      LV  Y K G +  A KVF+ 
Sbjct: 75  --------------------------ERNTISWN-----GLVSGYVKNGMISEARKVFDK 103

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           M  + V +W +M+ G    G  D+A  LF++M  + +    +++  +L      G +D  
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEA 159

Query: 417 LQALTYMQQMYGIDP--EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
                  ++++ + P  +V     ++  L   G L+EA E+   MP + N   W +++  
Sbjct: 160 -------RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISG 211

Query: 475 CRKHGEVEFGERLGKI-----------LLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
              + +V+   +L ++           +L+   ++ R ++ A++ K M  + +    G  
Sbjct: 212 YAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMI 271

Query: 524 M-IDVNGVIHEFR--------TGDGSHPQVKEIY------LMLKKIIEKLKMEGYSPNSS 568
           M   +NG + + R          DG+   + +IY      L    +   ++ EG  PN  
Sbjct: 272 MGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFP 331

Query: 569 QVL 571
            ++
Sbjct: 332 SII 334



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           R+     A +    +  +A+ G++D A  +F+D++ K V +WNA++ G   + R  +A +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 384 LFFKMQREKMRPDR--ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           LF KM      P+R  I++  ++S     GMI    +    M +       V  +  +V 
Sbjct: 69  LFDKM------PERNTISWNGLVSGYVKNGMISEARKVFDKMPER-----NVVSWTSMVR 117

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
              + G + EAE +   MP E N   W  +LG   + G V+   RL
Sbjct: 118 GYVQEGLIDEAELLFWRMP-EKNVVSWTVMLGGLIEDGRVDEARRL 162



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 24/242 (9%)

Query: 33  TILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           +I+ IL+      S  H +Q H+ +++S    D YVS  L+  +   +  +     +VF+
Sbjct: 332 SIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYI--KCGDLVTGKRVFD 389

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
                ++ +WNS++    +H    + + ++ EM    + P++ T+  V  AC  T   KE
Sbjct: 390 RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKE 449

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWN 203
           G+++   +         +      + YAC        G +N+A  ++++   ++D I W 
Sbjct: 450 GLEIFESMKSK------YQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 503

Query: 204 ALIDG-----YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           AL+        L   +I  AK+L +  +  + G Y  + + +A   R+++  +L   M  
Sbjct: 504 ALLSACRTHKNLDLAEI-AAKKLLQ-LEPSSAGPYILLSNLYASQSRWKDVAELRKTMRA 561

Query: 259 KD 260
           ++
Sbjct: 562 RN 563


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/522 (40%), Positives = 310/522 (59%), Gaps = 22/522 (4%)

Query: 154 QVHAHVVK-NGLCGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYL 210
           QVHA ++K N     + +   G+ + A     + A+QI    +  K +   WN+ +    
Sbjct: 79  QVHAQIIKTNAPLSILPLTRVGL-VCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 137

Query: 211 KCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
           +      A  LF   +      +T + ++++            R L   +      +W++
Sbjct: 138 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTS 197

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I GY + G  KEA+ +F +M+   +K  +  +  VLAACA LGALD G+ IH++  R+ 
Sbjct: 198 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 257

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              +  +   L+DMY KCG L+ A KVFE+M+ + V +W+AMIGGLAMHGRA++A+ LF 
Sbjct: 258 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 317

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M +  + P+ +TF  +L AC+H G+I  G +    M + YGI P++EHYGC+VDLL RA
Sbjct: 318 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 377

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------- 499
           G L EA E I +MPM+PN  VW ALLGACR H  VE  E   K LLE++P N        
Sbjct: 378 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 437

Query: 500 -------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                  R +D A++RK MK+R +K  PG S I V+GV+HEF  G+ SHP  ++I+   +
Sbjct: 438 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWE 497

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
           +++E+++++GY PN+S VL DI+E EK      HSEKLA+ FG +NT     IR++KNLR
Sbjct: 498 ELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLR 557

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +CEDCHSA KLIS +  R+I+VRDR R+H F +  CSC D+W
Sbjct: 558 ICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 22/349 (6%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS-NFELALKVFNSV--HKPNVFVWNSVL 105
           L+Q HA I+K+           L +      F+ +F  A ++F  V   KP  FVWNS L
Sbjct: 77  LRQVHAQIIKTNAPLSIL---PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCL 133

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           +A  E + P   I L+  +   D  P+ FT  +V +AC        G  +H  V K G  
Sbjct: 134 KALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF- 192

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-CGDIEGAKELFKS 224
                 +S I  Y   G   +A  +     ++ V C    +   L  C D+ GA +L   
Sbjct: 193 ---RSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADL-GALDLGMR 248

Query: 225 TKD--------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
             +        +N    N +I  + + G  EEA K+F EM ++  ++WSA+I G    G 
Sbjct: 249 IHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGR 308

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL +F++M +  I+P       +L AC+ +G + +G      + R+   +  +    
Sbjct: 309 AEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYG 368

Query: 337 -LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIE 383
            +VD+ ++ G L  A +   +M MK     W A++G   +H   + A E
Sbjct: 369 CMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 417



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 58  KSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV 117
           + G  ++  +S TL+  +   +    E A KVF  + +  V  W++++     H      
Sbjct: 255 RHGFKRNVRISNTLIDMYV--KCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEA 312

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQ 176
           + L+S+M  V  +PN  T+  +  ACS      EG +  A + ++ G+   +      + 
Sbjct: 313 LRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVD 372

Query: 177 MYACFGCVNKARQ-ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK---NTGS 232
           + +  G +++A + IL+   K + + W AL+       ++E A+E  K   +    N G 
Sbjct: 373 LLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGY 432

Query: 233 YNAMISGFARFGRFEEA---RKLFNEMNDKDEITWSAI-IDGYTKD 274
           Y  + + +A  GR+E+    RK   +   K    WS+I +DG   +
Sbjct: 433 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 478


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/624 (35%), Positives = 342/624 (54%), Gaps = 51/624 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H    + G   D +V   L+  HA  +    E A +VF+ +   +V  W S+    
Sbjct: 97  VKEVHDDATRCGVMSDVFVGNALI--HAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 154

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           ++   P + + ++ EM     KPN  T  ++  AC+  +  K G ++H   V++G+    
Sbjct: 155 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMV--- 211

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
                 + ++ C                      +AL+  Y KC  +  A+ +F     +
Sbjct: 212 ------VNLFVC----------------------SALVSLYAKCLSVREARMVFDLMPHR 243

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVF 284
           +  S+N +++ + +   +E+   LF +M+      DE TW+A+I G  ++G  +EA+E+F
Sbjct: 244 DVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMF 303

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +MQ+   KP +  +S +L AC+    L  G  IH +V R+    D    TAL+ MYAKC
Sbjct: 304 RKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKC 363

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+++  VF+ M+ K+V  WN MI   AMHG   +A+ LF KM   +++P+ +TF  VL
Sbjct: 364 GDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVL 423

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           S C+H+ +++ G+Q    M + + ++P+  HY C+VD+  RAG L EA + I  MPMEP 
Sbjct: 424 SGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPT 483

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           A+ W ALL ACR +  VE  +   K L E+EP N              +   + +++R L
Sbjct: 484 ASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRIL 543

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MKERGI   PG S + V   +H F  GD S+ +  +IY  L +++EK+KM GY P++  V
Sbjct: 544 MKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYV 603

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L DID+EEK  +   HSEKLA+AFG +N +  +TIRV KNLR+C DCH+A K +SKV   
Sbjct: 604 LQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGV 663

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I+VRD +R+HHF+NG CSC D W
Sbjct: 664 IIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 76/385 (19%)

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           H+    I++    G  N+ARQ+ D+  + D    + LI      G    A +++ S +++
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 229 NTGS---------------------------------------YNAMISGFARFGRFEEA 249
                                                       NA+I  + +    E A
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGA 132

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R++F+++  +D ++W+++   Y K G+ ++ ++VF EM    +KP    +S +L ACA L
Sbjct: 133 RRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 192

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF------ 363
             L  G  IH    R+ + V+  + +ALV +YAKC  +  A  VF+ M  ++V       
Sbjct: 193 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 364 -----------------------------TWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
                                        TWNA+IGG   +GR+++A+E+F KMQ+   +
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 312

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ IT + +L AC+ +  +  G +   Y+ + + +  ++     ++ +  + G L  +  
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLSRN 371

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V   M    +   W  ++ A   HG
Sbjct: 372 VFDMM-RRKDVVAWNTMIIANAMHG 395



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F  AR+LF+ +   D  T S +I   T  G   EA+++++ +Q   IKP   V     
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            ACA  G   +   +HD   R  +  D  +G AL+  Y KC  ++ A +VF+D+ +++V 
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W ++       G     +++F +M    ++P+ +T + +L ACA    +  G +   + 
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 205

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            + +G+   +     +V L  +   + EA  V   MP   +   W  +L A  K+ E E 
Sbjct: 206 VR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTAYFKNKEYEK 263

Query: 484 GERLGKILLEMEPQNRRCDD 503
           G  L    L+M     R D+
Sbjct: 264 GFSL---FLKMSRDGVRADE 280


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/655 (34%), Positives = 342/655 (52%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HAVILKS HF D YVS  L+  +AN      E A +VF S+   +   WN++L   ++++
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANC--GQMEDAERVFKSMLFKDCVSWNTLLSGMVQND 331

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                I+ + +M     KP++ +   +  A   +     G++VHA+ +K+G+  ++H+ +
Sbjct: 332 MYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGN 391

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------------------- 209
           S I MY    CV       +   + D+I W  +I GY                       
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV 451

Query: 210 --LKCGDIEGAKELFKSTK-DKNTGSY------------NAMISGFARFGRFEEARKLFN 254
             +  G I  A    KS K  K    Y            NA+++ +      + AR +F 
Sbjct: 452 DPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFE 511

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            +N KD ++W+++I     +G   EALE+FN +    I+P    L  VL A A+L +L +
Sbjct: 512 SINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKK 571

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  + R    ++ ++  +LVDMYA+CG ++ A  +F  +K +++  W +MI    M
Sbjct: 572 GKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGM 631

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG   DAI+LF KM  E + PD ITF  +L AC+H+G++  G Q    M+  Y ++P  E
Sbjct: 632 HGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPE 691

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLL R+  L EA   + +MP+EP+A VW ALLGACR H   + GE   K LL++
Sbjct: 692 HYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQL 751

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
             +N               R +DV ++R +MK   +K  PG S I+V   IH F   D S
Sbjct: 752 NTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKS 811

Query: 541 HPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           HPQ   IYL L +  + LK + GY   +  V  D+ EEEK      HSE+LA+ +G + T
Sbjct: 812 HPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVT 871

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             G  +R+ KNLR+C+DCH+  K+ S++ +R ++VRD  R+HHF  G CSC DFW
Sbjct: 872 SKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 235/526 (44%), Gaps = 60/526 (11%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSE-FSQKTILDILNTKCHTSWQHLKQAHAVILKS 59
           +S K     L H       + T  P  + +SQ   L       H +    +Q HA  LK+
Sbjct: 20  ISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALEL----CASHKALPQGQQLHAHFLKT 75

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
            ++ D     T    H   +  +F  A+KVF+ + +  +F WN+++ AC+        I 
Sbjct: 76  QNYLDSVFLDTKF-VHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIE 134

Query: 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
           LY EM  +    + FT+P V KAC   +  + G ++H   VK G  G V V ++ I MYA
Sbjct: 135 LYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYA 194

Query: 180 CFGCVNKARQILDDG--SKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSY 233
             G +  AR + D G   K D + WN++I  ++  G+   A  LF+  +    + NT ++
Sbjct: 195 KCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTF 254

Query: 234 -----------------------------------NAMISGFARFGRFEEARKLFNEMND 258
                                              NA+I+ +A  G+ E+A ++F  M  
Sbjct: 255 VSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLF 314

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD ++W+ ++ G  ++  Y +A+  F +MQ    KP +  +  ++AA      L  G+ +
Sbjct: 315 KDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEV 374

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H +  ++ I  +  +G +L+DMY KC  +      FE M  K++ +W  +I G A +   
Sbjct: 375 HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECH 434

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID-----PEV 433
            DA+ L  K+Q EKM  D +    +L AC+       GL++   +++++G        ++
Sbjct: 435 LDALNLLRKVQLEKMDVDPMMIGSILLACS-------GLKSEKLIKEIHGYVLKGGLADI 487

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                IV++ G    +  A  V  S+  + +   W +++  C  +G
Sbjct: 488 LIQNAIVNVYGELALVDYARHVFESINSK-DIVSWTSMITCCVHNG 532



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 207/470 (44%), Gaps = 46/470 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS--VHKPNVFVWNSVLRAC 108
           + H V +K G+    +V   L+  +A  +  +   A  +F+S  + K +   WNS++ A 
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYA--KCGDLGGARVLFDSGLMEKDDPVSWNSIISAH 226

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +   E    +SL+  M  V  + N +T+ +  +AC      K G  +HA ++K+    DV
Sbjct: 227 VGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDV 286

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           +V ++ I MYA  G +  A ++       D + WN L+ G ++      A   F+  +D 
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 229 ---------------------------------------NTGSYNAMISGFARFGRFEEA 249
                                                  N    N++I  + +    +  
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYM 406

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
              F  M +KD I+W+ II GY ++  + +AL +  ++Q +K+     ++  +L AC+ L
Sbjct: 407 GSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGL 466

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            +      IH +V +  +  D ++  A+V++Y +   +D A  VFE +  K++ +W +MI
Sbjct: 467 KSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMI 525

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                +G A +A+ELF  +    + PD IT   VL A A    + +G +   ++ +  G 
Sbjct: 526 TCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRK-GF 584

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             E      +VD+  R G +  A  + + +  + +  +W +++ A   HG
Sbjct: 585 FLEGLIANSLVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMHG 633



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 100/216 (46%), Gaps = 20/216 (9%)

Query: 278 KEALEVFNEMQRDKIK-----PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           KEA +       D +      P +   S  L  CAS  AL QG  +H H  +    +D+V
Sbjct: 23  KEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSV 82

Query: 333 -LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            L T  V MY KCG    A KVF+ M  + +FTWNAMIG     GR  +AIEL+ +M+  
Sbjct: 83  FLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVL 142

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG------CIVDLLGR 445
            +  D  TF CVL AC      +R L       +++G+  +  + G       ++ +  +
Sbjct: 143 GVSLDAFTFPCVLKAC--GAFKERRLGC-----EIHGVAVKCGYGGFVFVCNALIAMYAK 195

Query: 446 AGYLAEAEEVISSMPMEPNAAV-WEALLGACRKHGE 480
            G L  A  +  S  ME +  V W +++ A    GE
Sbjct: 196 CGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGE 231



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 124/269 (46%), Gaps = 19/269 (7%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H  +LK G   D  +   +V  +      ++  A  VF S++  ++  W S++  C
Sbjct: 472 IKEIHGYVLKGG-LADILIQNAIVNVYGELALVDY--ARHVFESINSKDIVSWTSMITCC 528

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + +      + L++ ++  + +P+  T  +V  A +   + K+G ++H  +++ G   + 
Sbjct: 529 VHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEG 588

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI--DGYLKCGDIEGAKELFKSTK 226
            + +S + MYA  G +  AR I +   + D+I W ++I  +G   CG  + A +LF    
Sbjct: 589 LIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCG--KDAIDLFSKMT 646

Query: 227 DKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYY 277
           D+N      ++ A++   +  G   E ++ F  M ++ ++      ++ ++D   +    
Sbjct: 647 DENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSL 706

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           +EA      M    I+P   V   +L AC
Sbjct: 707 EEAYHFVRNM---PIEPSAEVWCALLGAC 732


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 342/626 (54%), Gaps = 49/626 (7%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S + L++AHA ++K G  Q       LV  +A SR         +F+   + ++ +++S+
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRL--LPDTRLLFDETPRRDLHLYSSL 75

Query: 105 LRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           L A      P  V+ L   M+  D+ +P+ F   ++  A +   +   G Q+H H V + 
Sbjct: 76  LAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASP 135

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              D  VKSS                               LID Y KCG  + A+++F 
Sbjct: 136 YSSDDVVKSS-------------------------------LIDMYCKCGVPDDARKVFD 164

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
           S   KN+  + A+ISG+   GR +EA +LF  M  +    W+A+I G+ + G    A+++
Sbjct: 165 SIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKL 224

Query: 284 FNEMQRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           F +M+RD +     FVLS  +   A L A   G  +H    R       ++G A+VDMY+
Sbjct: 225 FVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYS 284

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KC  +  A +VFE++  +++ +W  M+ G A HGRA++A  L+ +M    ++P+ +TF  
Sbjct: 285 KCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVG 344

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           ++ AC+HAG++ +G Q    M+  YGI+P ++HY C +DLL R+G+LAEAEE+I++MP  
Sbjct: 345 LIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYV 404

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMR 508
           P+ A W +LL AC+K+   E   R+   LLE+ P+              N + D V  +R
Sbjct: 405 PDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVR 464

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           KLM +  I+  PG S I+V      F  G+      +EI   L++++ +++  GY P++S
Sbjct: 465 KLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSEMRQRGYVPDTS 524

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            V+ D++E EKE     HSE+LA+AFG + +  G+ IRV+KNLRVC DCH+  K IS++F
Sbjct: 525 SVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCNDCHTVMKFISEIF 584

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R IIVRD  R+HHF  GKCSC++FW
Sbjct: 585 QRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/590 (36%), Positives = 330/590 (55%), Gaps = 21/590 (3%)

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
           LA  +F+ +   NV  +N ++R+ + ++     + +Y  M      P+ +TYP V KA S
Sbjct: 72  LARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASS 131

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            +++   G+Q+H  V+K GL  +++V +  I MY     + +A+Q+LD+    DV+ WN+
Sbjct: 132 RSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNS 191

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF------ARFGRFEEARKLFNEMND 258
           ++  Y + G    A EL +  +  N    +  ++                 +++F ++  
Sbjct: 192 MVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTK 251

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K  I+W+ +I  Y  +   KEA+ ++++M+ + ++P    +  VL A   L AL  G  +
Sbjct: 252 KSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRV 311

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H   +R  +  + +L  AL+DMYAKCG L  A  VF  M+ ++V +W ++I      G+ 
Sbjct: 312 HKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQG 371

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            DA+ +F +M+   + PD I F  VL+AC+HAG++D G      M +  GI P++EH+ C
Sbjct: 372 RDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFAC 430

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGRAG + EA   I  MP+EP+  VW  LL ACR +  +  G      LL + P++
Sbjct: 431 VVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEH 490

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R  DVA +R +M+ +GIK  PG S +++N  +H F  GD SHPQ 
Sbjct: 491 SGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQS 550

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           K+IY  L  ++ K+K  GY P +   L D++EE+KE     HSEKLA+AF  INT PG  
Sbjct: 551 KKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTP 610

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV KNLRVC DCH A KLISK+ +R+II+RD  R+HHF+ G CSC D+W
Sbjct: 611 IRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 13/225 (5%)

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA-----MISGFA 241
           ARQ+    S ++ +C N ++D Y    DI   K+L     +     +N      ++  +A
Sbjct: 14  ARQL----SFTEDLC-NRILDQY---PDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYA 65

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
             G    AR +F+E+ DK+ + ++ +I  Y  +  YK+AL V+  M      P  +   C
Sbjct: 66  ACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPC 125

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           VL A +   +L  G+ IH  V +  + ++  +G  L+ MY KC  L  A +V +++  ++
Sbjct: 126 VLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRD 185

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           V +WN+M+   A +GR +DA+EL  +M+   ++P+  T A +L A
Sbjct: 186 VVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 136/316 (43%), Gaps = 32/316 (10%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY----------------VSGTLVKCH 75
           + +LD +  +   SW  +   +A   ++G F D                     +L+   
Sbjct: 175 QQVLDEIPCRDVVSWNSMVSVYA---QNGRFNDALELCREMEALNLKPNDCTMASLLPAV 231

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
            N+   N     ++F  + K +V  WN ++   + ++ P   + LYS+M     +P+  +
Sbjct: 232 TNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVS 291

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V  A     A   G +VH    +  L  ++ ++++ I MYA  GC+  AR + +   
Sbjct: 292 IVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQ 351

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARK 251
             DV+ W ++I  Y KCG    A  +F   ++     ++ ++ ++++  +  G  ++ R 
Sbjct: 352 FRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRY 411

Query: 252 LFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            FN M +   IT     ++ ++D   + G   EA     +M    ++P + V   +L+AC
Sbjct: 412 YFNLMAECG-ITPKLEHFACVVDLLGRAGKIDEAYGFIRQM---PLEPDERVWGPLLSAC 467

Query: 307 ASLGALDQGIWIHDHV 322
                ++ GI   D +
Sbjct: 468 RVYSNMNIGILAADKL 483



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 5/171 (2%)

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +G  L+ +YA CG   +A  +F+++  K V  +N MI     +    DA+ ++  M  + 
Sbjct: 56  VGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
             PD  T+ CVL A + +  +  GLQ    + ++ G+D  +     ++ + G+   L EA
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKI-GLDLNLYVGNGLIAMYGKCKSLKEA 174

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
           ++V+  +P   +   W +++    ++G   F + L ++  EME  N + +D
Sbjct: 175 QQVLDEIPCR-DVVSWNSMVSVYAQNG--RFNDAL-ELCREMEALNLKPND 221


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/420 (47%), Positives = 275/420 (65%), Gaps = 14/420 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N ++  +A  G  E A KLF  M +++ +TW+++I+GY  +G   EAL +F EM    ++
Sbjct: 34  NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 93

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F +  +L+ACA LGAL  G   H ++ +  +  +   G AL+D+YAKCG +  A KV
Sbjct: 94  PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKV 153

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F++M+ K V +W ++I GLA++G   +A+ELF +++R+ + P  ITF  VL AC+H GM+
Sbjct: 154 FDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMV 213

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           D G      M++ YGI P++EHYGC+VDLLGRAG + +A E I +MPM+PNA VW  LLG
Sbjct: 214 DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLG 273

Query: 474 ACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTN 519
           AC  HG +  GE     LL++EP++              +R  DV K+R+ M   G+K  
Sbjct: 274 ACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKT 333

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           PG S++++   +HEF  GD SHPQ +EIY+ L +I + LK+EGY P+ S VL DI+EEEK
Sbjct: 334 PGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEK 393

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           ETA  YHSEK+AIAF  INT  G  IRV+KNLRVC DCH A KLISKVF R+I+VRDR R
Sbjct: 394 ETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 41/268 (15%)

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
           +EG +VH+  ++NG    V V+++ + MYA  G    A ++ +  ++ +++ WN++I+GY
Sbjct: 12  REGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGY 71

Query: 210 LKCGDIEGAKELFKSTK---------------------------------------DKNT 230
              G    A  LF+                                          D N 
Sbjct: 72  ALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNL 131

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            + NA++  +A+ G   +A K+F+EM +K  ++W+++I G   +G+ KEALE+F E++R 
Sbjct: 132 HAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERK 191

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDM 349
            + P +     VL AC+  G +D+G      +K     V  +     +VD+  + G +  
Sbjct: 192 GLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQ 251

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMHG 376
           A +  ++M M+     W  ++G   +HG
Sbjct: 252 AHEFIQNMPMQPNAVVWRTLLGACTIHG 279



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           A A L  + +G  +H    RN       +   LV MYA CG  + A K+FE M  + + T
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           WN++I G A++GR ++A+ LF +M    + PD  T   +LSACA  G +  G +A  YM 
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           ++ G+D  +     ++DL  + G + +A +V   M  E +   W +L+     +G   FG
Sbjct: 124 KV-GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNG---FG 178

Query: 485 ERLGKILLEME 495
           +   ++  E+E
Sbjct: 179 KEALELFKELE 189



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 14/275 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H++ +++G     +V  TLV  H  +   + E A K+F  + + N+  WNSV+    
Sbjct: 15  EKVHSIAIRNGFESLVFVQNTLV--HMYAACGHAESAHKLFELMAERNLVTWNSVINGYA 72

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  P   ++L+ EM     +P+ FT  ++  AC+   A   G + H ++VK GL G++H
Sbjct: 73  LNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLH 132

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
             ++ + +YA  G + +A ++ D+  +  V+ W +LI G    G  + A ELFK  + K 
Sbjct: 133 AGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKG 192

Query: 229 ---NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              +  ++  ++   +  G  +E    F  M ++  I      +  ++D   + G  K+A
Sbjct: 193 LMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQA 252

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
            E    M    ++P   V   +L AC   G L  G
Sbjct: 253 HEFIQNM---PMQPNAVVWRTLLGACTIHGHLALG 284


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/678 (32%), Positives = 359/678 (52%), Gaps = 57/678 (8%)

Query: 32  KTILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           KT+  ++ T   T      KQ HA++++ G   + ++S   +  +  S+    +  +K+F
Sbjct: 76  KTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLY--SKCGELDYTIKLF 133

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
           + + + N+  W S++     ++     +S + +M        +F   +V +AC+   A +
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G QVH  VVK G   ++ V S+   MY+  G ++ A +  ++    D + W ++IDG++
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 211 KCGDIEGA---------------------------------------KELFKSTKDKNTG 231
           K GD + A                                         + K   +  T 
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEI-TWSAIIDGYTKDGYYKEALEVFNEMQRD 290
             NA+   +++ G    A  +F   +D   I + +AIIDGY +    ++AL  F +++R 
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRR 373

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
            I+P +F  + ++ ACA+   L+ G  +H  V + +   D  + + LVDMY KCG  D +
Sbjct: 374 GIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHS 433

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            ++F++++  +   WN ++G  + HG   +AIE F  M    ++P+ +TF  +L  C+HA
Sbjct: 434 IQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHA 493

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           GM++ GL   + M+++YG+ P+ EHY C++DLLGRAG L EAE+ I++MP EPN   W +
Sbjct: 494 GMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCS 553

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI 516
            LGAC+ HG++E  +     L+++EP+N              ++ +DV  +RK++K+  +
Sbjct: 554 FLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNM 613

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
              PG S +D+    H F   D SHPQ KEIY  L  +++++K  GY P +  VL D+D+
Sbjct: 614 NKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDD 673

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
             KE    YHSE++A+AF  +    G  I V KNLRVC DCHSA K ISKV +R+IIVRD
Sbjct: 674 NLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRD 733

Query: 637 RVRYHHFRNGKCSCNDFW 654
             R+HHF NG CSC D+W
Sbjct: 734 ISRFHHFSNGSCSCGDYW 751


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/717 (32%), Positives = 364/717 (50%), Gaps = 117/717 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP---NVFVWNSVLRACL 109
           H +I  +G   + +V   LV  +  SR  + E A  VF+ + +    +V  WNS++ A +
Sbjct: 172 HGLICCNGFESNVFVCNALVAMY--SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHV 229

Query: 110 EHNEPWRVISLYSEMVGV------DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + + P   + L+SEM  +      + + +  +   +  AC+  +A  +  ++H++ ++NG
Sbjct: 230 KGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNG 289

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILD------------------------------- 192
              D  V ++ I  YA  G +  A  + +                               
Sbjct: 290 TFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFK 349

Query: 193 ----DGSKSDVICWNALIDGYLKCGDIEGAKELFKS------------------------ 224
               +    DVI W+A+I GY + G  + A + F+                         
Sbjct: 350 NMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLG 409

Query: 225 --TKDKNTGSY-------------------------NAMISGFARFGRFEEARKLFNEM- 256
             ++   T +Y                         NA+I  +++   F+ AR +FN + 
Sbjct: 410 ALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIP 469

Query: 257 -NDKDEITWSAIIDGYTKDGYYKEALEVFNEM--QRDKIKPRKFVLSCVLAACASLGALD 313
             +++ +TW+ +I GY + G   +AL++F+EM  +   + P  + +SC+L ACA L +L 
Sbjct: 470 RRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLR 529

Query: 314 QGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
            G  IH +V R+     +V  +   L+DMY+KCG +D A  VF+ M  +   +W +M+ G
Sbjct: 530 MGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSG 589

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             MHGR  +A+++F KMQ+    PD I+F  +L AC+H+GM+D+GL     M+  YG+  
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIA 649

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             +HY C++DLL R+G L +A + I  MPMEP+AA+W ALL ACR H  VE  E     L
Sbjct: 650 SAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKL 709

Query: 492 LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           + M+ +N              RR  DVA++R+LMK+ GIK  PG S +        F  G
Sbjct: 710 VSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVG 769

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SHP   EIY +L+++I ++K+ GY P ++  L D+D+EEK      HSEKLA+A+G +
Sbjct: 770 DRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLL 829

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            T PG  IR+ KNLRVC DCHSA   ISK+   +IIVRD  R+HHF+NG CSC  +W
Sbjct: 830 TTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 227/520 (43%), Gaps = 104/520 (20%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL V   V       WN ++RA +E     R I +   M+   +KP+ FT P   KAC  
Sbjct: 102 ALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGE 161

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK---SDVICW 202
             + + G   H  +  NG   +V V ++ + MY+  G +  A  + D+ ++    DVI W
Sbjct: 162 LPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISW 221

Query: 203 NALIDGYLKCGDIEGAKELF---------KSTKDKN------------------------ 229
           N+++  ++K  +   A +LF         K+T +++                        
Sbjct: 222 NSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEI 281

Query: 230 ------TGSY------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                  G++      NA+I  +A+ G  ++A  +FN M  KD ++W+A++ GYT+ G +
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKF 341

Query: 278 KEALEVFNEMQRDKI-----------------------------------KPRKFVLSCV 302
             A E+F  M+++ I                                   +P    +  +
Sbjct: 342 GAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISL 401

Query: 303 LAACASLGALDQGIWIHDHVKRNSIC------------VDAVLGTALVDMYAKCGRLDMA 350
           L+ACASLGAL QG+  H +  +  +              D V+  AL+DMY+KC     A
Sbjct: 402 LSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 351 WKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKM--QREKMRPDRITFACVLSA 406
             +F  +  +E  V TW  MIGG A +G ++DA++LF +M  +   + P+  T +C+L A
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           CAH   +  G Q   Y+ + +  +  V     C++D+  + G +  A  V  SMP + N 
Sbjct: 522 CAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNE 580

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
             W +++     HG    G+    I  +M+      DD++
Sbjct: 581 VSWTSMMSGYGMHGR---GKEALDIFDKMQKAGFVPDDIS 617



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 27/274 (9%)

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           + S K   TG    +++ +   G   +A  +   +     + W+ ++  + ++G    A+
Sbjct: 79  YVSPKSLGTG----VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAI 134

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            V   M R   KP  F L   L AC  L +   G   H  +  N    +  +  ALV MY
Sbjct: 135 GVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMY 194

Query: 342 AKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQ---REKM-- 393
           ++ G L+ A  VF+++  K   +V +WN+++           A++LF +M     EK   
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 394 -RPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGRA 446
            R D I+   +L ACA        L+AL   ++++      G   +      ++D   + 
Sbjct: 255 ERSDIISIVNILPACA-------SLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKC 307

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           G + +A  V + M  + +   W A++    + G+
Sbjct: 308 GSMKDAVNVFNVMEFK-DVVSWNAMVTGYTQSGK 340


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/690 (34%), Positives = 348/690 (50%), Gaps = 96/690 (13%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-----HKPNVFVWNSVLRACLEHNE 113
           SG   D      ++  +A S    FE A K F  +      KPNV  W +++    ++  
Sbjct: 285 SGVKPDQVTWNAIISGYAQS--GQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGY 342

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK-----------N 162
            +  +S++ +MV    KPN  T  +   AC+     + G ++H + +K           N
Sbjct: 343 DFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 402

Query: 163 GL------CGDVHVKSSGIQM---------------YACFGCVNKARQILDD----GSKS 197
            L      C  V V      M               YA  G   +A ++L +    G + 
Sbjct: 403 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEP 462

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTK----DKNT----------------------- 230
           D+I WN L+ G+ + GD + A E F+       D NT                       
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIH 522

Query: 231 ------------GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                       G  +A+IS ++     E A  +F+E++ +D + W++II    + G   
Sbjct: 523 GYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSV 582

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            AL++  EM    ++     +   L AC+ L AL QG  IH  + R  +     +  +L+
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMY +CG +  + ++F+ M  +++ +WN MI    MHG   DA+ LF + +   ++P+ I
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 702

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  +LSAC+H+G+I+ G +    M+  Y +DP VE Y C+VDLL RAG   E  E I  
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDV 504
           MP EPNAAVW +LLGACR H   +  E   + L E+EPQ+               R +D 
Sbjct: 763 MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDA 822

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           AK+R LMKERG+   PG S I+V   +H F  GD SHP +++I   ++ +   +K  GY 
Sbjct: 823 AKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYV 882

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P+++ VL D+DE+EKE +   HSEK+A+AFG I+T  G  +R+IKNLRVC DCHSATK I
Sbjct: 883 PDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFI 942

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SKV KRDII+RD  R+HHF +G CSC D+W
Sbjct: 943 SKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 212/393 (53%), Gaps = 17/393 (4%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA ++ +G     ++   L++ +  +     E A ++F+ + + NVF W +++     
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQT--GCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
             +    I L+  MV    +P+ F +P VFKACS  +  + G  V+ +++  G  G+  V
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV 227

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK---- 226
           K S + M+   G ++ AR+  ++    DV  WN ++ GY   G+ + A +     K    
Sbjct: 228 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGV 287

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIIDGYTKDGYYKEAL 281
             +  ++NA+ISG+A+ G+FEEA K F EM        + ++W+A+I G  ++GY  EAL
Sbjct: 288 KPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALVDM 340
            VF +M  + +KP    ++  ++AC +L  L  G  IH + +K   +  D ++G +LVD 
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKC  +++A + F  +K  ++ +WNAM+ G A+ G  ++AIEL  +M+ + + PD IT+
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMY--GIDP 431
             +++     G    G  AL + Q+M+  G+DP
Sbjct: 468 NGLVTGFTQYG---DGKAALEFFQRMHSMGMDP 497



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 166/342 (48%), Gaps = 19/342 (5%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++  + + G  E+AR++F++M++++  +W+AI++ Y   G Y+E +++F  M  + ++P 
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
            FV   V  AC+ L     G  ++D++       ++ +  +++DM+ KCGR+D+A + FE
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +++ K+VF WN M+ G    G    A++    M+   ++PD++T+  ++S  A +G  + 
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME---PNAAVWEALL 472
             +    M  +    P V  +  ++    + GY  EA  V   M +E   PN+    + +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 473 GACRKHGEVEFGERLGKILLEMEP-------QNRRCDDVAKMRKL-MKERGIKTNPGSSM 524
            AC     +  G  +    +++E         N   D  AK R + +  R       + +
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +  N ++  +    GSH +  E       ++ ++K +G  P+
Sbjct: 430 VSWNAMLAGYAL-RGSHEEAIE-------LLSEMKFQGIEPD 463



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 194/478 (40%), Gaps = 132/478 (27%)

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
           SVH+  V    ++L + ++   P   I +Y+               ++ + C      + 
Sbjct: 63  SVHRNGVLNNAAMLLSSMDLTNPDECIEIYA---------------SILQKCRKLYNLRL 107

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G QVHA +V NG+     + S  +++Y   GCV  AR++ D  S+ +V  W A+++ Y  
Sbjct: 108 GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 212 CGDIEGAKELF----------------------KSTKDKNTGS--YNAMIS--------- 238
            GD E   +LF                         K+   G   Y+ M+S         
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV 227

Query: 239 ------GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
                  F + GR + AR+ F E+  KD   W+ ++ GYT  G +K+AL+  ++M+   +
Sbjct: 228 KGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGV 287

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           KP                  DQ  W                  A++  YA+ G+ + A K
Sbjct: 288 KP------------------DQVTW-----------------NAIISGYAQSGQFEEASK 312

Query: 353 VFEDM-KMKE----VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
            F +M  +K+    V +W A+I G   +G   +A+ +F KM  E ++P+ IT A  +SAC
Sbjct: 313 YFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR---------------------- 445
            +  ++  G +   Y  ++  +D ++     +VD   +                      
Sbjct: 373 TNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSW 432

Query: 446 ----AGYL-----AEAEEVISSMP---MEPNAAVWEALLGACRKHGE----VEFGERL 487
               AGY       EA E++S M    +EP+   W  L+    ++G+    +EF +R+
Sbjct: 433 NAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 14/266 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  +L++       V   L+  ++     + E+A  VF+ +   +V VWNS++ AC 
Sbjct: 519 KEIHGYVLRNHIELSTGVGSALISMYSGC--DSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + L  EM   + + N  T  +   ACS   A ++G ++H  +++ GL     
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF 636

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           + +S I MY   G + K+R+I D   + D++ WN +I  Y   G    A  LF+  +   
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 696

Query: 228 --KNTGSYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIIDGYTKDGYYKEA 280
              N  ++  ++S  +  G  EE  K F  M      D     ++ ++D  ++ G + E 
Sbjct: 697 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 756

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAAC 306
           LE   +M     +P   V   +L AC
Sbjct: 757 LEFIEKM---PFEPNAAVWGSLLGAC 779


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 326/590 (55%), Gaps = 49/590 (8%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFK 141
            ELA+ +F ++ + ++  WN+++    ++      +  +S M+   S +P+ FT  +V  
Sbjct: 429 MELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+     K G Q+H+++++ G+               C      + QI+          
Sbjct: 489 ACANLRMLKMGKQMHSYILRTGM--------------PC------SSQIM---------- 518

Query: 202 WNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            NALI  Y K G +E A+ +       D N  S+ A++ G+ + G  ++AR++F+ MN++
Sbjct: 519 -NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNR 577

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D I W+A+I GY ++G   EA+E+F  M     +P    L+ VL+ACASL  LD G  IH
Sbjct: 578 DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIH 637

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRA 378
               R+       +  A++ +YA+ G + +A +VF+ +   KE  TW +MI  +A HG  
Sbjct: 638 CKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLG 697

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           + A+ LF +M R  ++PD IT+  VLSACAHAG +D+G +    MQ  +GI P++ HY C
Sbjct: 698 EQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYAC 757

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDL  RAG L EA E I  MP+ P+  VW +LL ACR     +  E     LL ++P N
Sbjct: 758 MVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHN 817

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R +D A++ KL K++G+K   G S   V G +H F   D  HPQ 
Sbjct: 818 SGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQR 877

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
             IY    ++ E++K  G+ P+ + VL D+D+E KE     HSEKLAIAFG I+T    T
Sbjct: 878 DSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT 937

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R++KNLRVC DCH+A K ISK   R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 938 LRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 214/505 (42%), Gaps = 56/505 (11%)

Query: 34  ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN--FELALKVFN 91
           +L +  T  + S      AHAV  K+G     Y+   L+  +A+   S   F  A  +F+
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAV--KAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFD 272

Query: 92  SV--HKPNVFVWNSVLRACLEHNE-----------P--------------------WRVI 118
            +   + N F WNS+L    +              P                    W  +
Sbjct: 273 DIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAV 332

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
             + +MV     P++FT   V  +C+  EA   G +VH  VVK GL   V V +S + MY
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMY 392

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
              G    AR + +      V  WN ++  Y   G +E A  +F++  +++  S+N +I+
Sbjct: 393 GKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIA 452

Query: 239 GFARFGRFEEARKLFNEM-----NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           G+ + G    A K F+ M      + D  T ++++         K   ++ + + R  + 
Sbjct: 453 GYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 512

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
               +++ +++  A  G+++    I D      + V +   TAL++ Y K G    A ++
Sbjct: 513 CSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISF--TALLEGYVKLGDTKQAREI 570

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++V  W AMI G   +G+ D+A+ELF  M      P+  T A VLSACA    +
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYL 630

Query: 414 DRGLQ----ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           D G Q    A+  +Q+       V     I+ +  R+G +  A  V   +        W 
Sbjct: 631 DYGKQIHCKAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWT 685

Query: 470 ALLGACRKHGEVEFGERLGKILLEM 494
           +++ A  +HG    GE+   +  EM
Sbjct: 686 SMIVAMAQHG---LGEQAVVLFEEM 707



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 170/393 (43%), Gaps = 67/393 (17%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG----CVNKARQIL 191
           Y  + + C        G  +HAH VK GL    ++ ++ +  YA  G    C  +AR + 
Sbjct: 212 YARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLF 271

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
           DD                     I  A+        +N  ++N+++S +A+ GR  +A  
Sbjct: 272 DD---------------------IPYAR--------RNAFTWNSLLSLYAKSGRLPDAHV 302

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F EM D+D ++W+ +I G  + G + +A++ F +M  +   P +F L+ VL++CA++ A
Sbjct: 303 VFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEA 362

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
              G  +H  V +  +     +  +++ MY KCG  + A  VFE M+++ V +WN M+  
Sbjct: 363 CGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSL 422

Query: 372 LAMHGRADDAIELFFKM--------------------------------QREKMRPDRIT 399
               GR + A+ +F  M                                    M PD  T
Sbjct: 423 YTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFT 482

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SS 458
              VLSACA+  M+  G Q  +Y+ +  G+    +    ++    ++G +  A  ++  +
Sbjct: 483 VTSVLSACANLRMLKMGKQMHSYILRT-GMPCSSQIMNALISTYAKSGSVETARRIMDQA 541

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           +  + N   + ALL    K G+ +    +  I+
Sbjct: 542 VVADLNVISFTALLEGYVKLGDTKQAREIFDIM 574


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 342/635 (53%), Gaps = 69/635 (10%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +KQ H  +L+ G  Q  Y+   L++              +V   V   N F+W +V+R 
Sbjct: 65  QIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRG 124

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK-NGLCG 166
                +    I++Y  M   +  P  FT+  + KAC        G Q HA   +  G C 
Sbjct: 125 YTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCF 184

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
                                           V   N +ID Y+KCG I  A+++F    
Sbjct: 185 --------------------------------VYVGNTMIDMYVKCGSIVCARKVFDEMP 212

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +++  S+  +I+ +AR G  E A  LF  +  KD + W+A++ G+ ++   +EALE F+ 
Sbjct: 213 ERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDR 272

Query: 287 MQRDKIKPRKFVLSCVLAACASLGA---LDQGIWI--------HDHVKRNSICVDAVLGT 335
           M++  I+  +  ++  ++ACA LGA    D+ + I         DHV         V+G+
Sbjct: 273 MEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHV---------VIGS 323

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF-FKMQREKMR 394
           AL+DMY+KCG ++ A  VF  M  K VF++++MI GLA HGRA +A++LF + + +  ++
Sbjct: 324 ALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIK 383

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ +TF   L+AC+H+G++D+G Q    M Q +G++P  +HY C+VDLLGRAG L EA E
Sbjct: 384 PNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALE 443

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ-----------NRRCDD 503
           +I +M +EP+  VW ALLGACR H   +  E   + L E+EP                 D
Sbjct: 444 LIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGD 503

Query: 504 ---VAKMRKLMKERGIKTNPGSS-MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
              V  +RKL+KE+G+K  P  S ++D NG +H+F  G+ +HP  K+I   L++++E+L 
Sbjct: 504 WGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLT 563

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P+ S V +D+ +  K      H+EKLA+AF  + T+   TI+++KNLR+C+DCH 
Sbjct: 564 ALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHM 623

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +L S+V  R II+RD +R+HHFR+G CSC DFW
Sbjct: 624 FMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 358/663 (53%), Gaps = 68/663 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+++ +SG  Q   VS  L   +A  R  + + A +VF+   + +V  WN++L A  +H 
Sbjct: 248 HSIVRESGLEQTLVVSTALASAYA--RLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHG 305

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                  L++ M+     P+K T       CS   + + G  +HA  ++ GL  D+ + +
Sbjct: 306 HMSEAALLFARMLHEGIPPSKVTLVNASTGCS---SLRFGRMIHACALEKGLDRDIVLGN 362

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------ 226
           + + MY   G   +AR + + G   + + WN +I G  + G ++ A ELF+  +      
Sbjct: 363 ALLDMYTRCGSPEEARHLFE-GIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAP 421

Query: 227 ------------DKNTGSYNAMISG-------------------------FARFGRFEEA 249
                         N     AM  G                         +A  G  +EA
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEA 481

Query: 250 RKLFNE--MNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              F    M D+ D ++W+AII   ++ G+ K AL  F  M    + P +     VL AC
Sbjct: 482 AASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDAC 541

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTW 365
           A   AL +G+ +HDH++ + +  +  + TAL  MY +CG L+ A ++FE + + ++V  +
Sbjct: 542 AGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIF 601

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NAMI   + +G A +A++LF++MQ+E  RPD  +F  VLSAC+H G+ D G +    M+Q
Sbjct: 602 NAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQ 661

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            YGI P  +HY C VD+LGRAG+LA+AEE+I  M ++P   VW+ LLGACRK+ +V+ G 
Sbjct: 662 SYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGR 721

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
               ++ E++P +               + D+ A++R  M+ RG++   G S I++   +
Sbjct: 722 LANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRV 781

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           HEF  GD SHP+ +EIY  L+++  +++  GY P++  VL  +DE EKE     HSE+LA
Sbjct: 782 HEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLA 841

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IA G +++    T+RV+KNLRVCEDCH+ATK ISK+  ++I+VRD  R+HHF +G CSC 
Sbjct: 842 IALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCG 900

Query: 652 DFW 654
           D+W
Sbjct: 901 DYW 903



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 192/435 (44%), Gaps = 50/435 (11%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+ +   +   W +++ A  EH +  R I ++  M     + +  T+  V KAC+   
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
              +G  +HA +V++GL G   + +  + +Y   GCV  A  +L +  + D++ WNA I 
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASA-MLLFERMERDLVSWNAAIA 201

Query: 208 GYLKCGDIEGAKELFK------------------------------------STKDKNTG 231
              + GD++ A ELF+                                    S  ++   
Sbjct: 202 ANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLV 261

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
              A+ S +AR G  ++A+++F+   ++D ++W+A++  Y + G+  EA  +F  M  + 
Sbjct: 262 VSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I P K  L      C+S   L  G  IH       +  D VLG AL+DMY +CG  + A 
Sbjct: 322 IPPSKVTLVNASTGCSS---LRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEAR 378

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            +FE +    V +WN MI G +  G+   A+ELF +MQ E M P R T+  +L A A   
Sbjct: 379 HLFEGIPGNAV-SWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNP 437

Query: 412 MIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
              R +     +        Y  +P +     +V +    G + EA        ME    
Sbjct: 438 EEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 467 V--WEALLGACRKHG 479
           V  W A++ +  +HG
Sbjct: 496 VVSWNAIISSLSQHG 510



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 15/322 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++ H+ I+  G+  +  +   +VK +A+         + +      + +V  WN+++ + 
Sbjct: 447 RKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSL 506

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +H    R +  +  M      PN+ T   V  AC+   A  EGV VH H+  +G+  +V
Sbjct: 507 SQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNV 566

Query: 169 HVKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
            V ++   MY   G +  AR+I +    + DV+ +NA+I  Y + G    A +LF   + 
Sbjct: 567 FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQ 626

Query: 228 KNT----GSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYK 278
           + +     S+ +++S  +  G  +E  ++F  M     I      ++  +D   + G+  
Sbjct: 627 EGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLA 686

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           +A E+   M    +KP   V   +L AC     +D+G   +  V R     D      L 
Sbjct: 687 DAEELIRCMD---VKPTVLVWKTLLGACRKYRDVDRGRLANSMV-RELDPGDESAYVVLS 742

Query: 339 DMYAKCGRLDMAWKVFEDMKMK 360
           ++ A  G+ D A +V  +M+ +
Sbjct: 743 NILAGAGKWDEAAEVRTEMESR 764



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L QG  IH  +   S+ ++  LG  L+ +Y KC  L    +VF  +++++  +W  +I  
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
              HG+A  AI +F +MQ+E +R D +TF  VL ACA  G + +G     ++ +  G++ 
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVE-SGLEG 161

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           +      ++ + G  G +A A  +     ME +   W A + A  + G+++    L
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFER--MERDLVSWNAAIAANAQSGDLDMALEL 215


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/657 (35%), Positives = 348/657 (52%), Gaps = 55/657 (8%)

Query: 51   QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            Q H+  +K+G   D  + G+L+  +  S+ ++ E A K F      N+ +WN +L A  +
Sbjct: 383  QLHSHAIKAGMSADIILEGSLLDLY--SKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 111  HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
             +       ++ +M      PN+FTYP++ + C+   A   G Q+H HV+K G   +V+V
Sbjct: 441  LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 171  KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-- 228
             S  I MYA +G +  A +IL    + DV+ W A+I GY++      A +LF+  + +  
Sbjct: 501  CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 229  ---NTG-----------------------SY-----------NAMISGFARFGRFEEARK 251
               N G                       SY           NA+IS +AR GR +EA  
Sbjct: 561  QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 252  LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
             F ++ DK+ I+W++++ G  + GY++EAL+VF  M R + +   F     ++A ASL  
Sbjct: 621  AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 312  LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
            + QG  IH  V +     +  +  +L+ +YAK G +  AW+ F DM  + V +WNAMI G
Sbjct: 681  IKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITG 740

Query: 372  LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             + HG   +A+ LF +M+   + P+ +TF  VLSAC+H G++  GL     M +++ + P
Sbjct: 741  YSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 432  EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            + EHY C+VDLLGRAG L  A E I  MP+  +A +W  LL AC  H  +E GER    L
Sbjct: 801  KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHL 860

Query: 492  LEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
            LE+EP++              R+       RKLMK+ G+K  PG S I+V   +H F  G
Sbjct: 861  LELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAG 920

Query: 538  DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
            D  HP   +IY  +  +  +    GY  +S  +L + ++ +K+     HSEKLAIAFG +
Sbjct: 921  DKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLL 980

Query: 598  NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +      IRV+KNLRVC DCH+  K +SK+  R IIVRD  R+HHF  G CSC DFW
Sbjct: 981  SLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 256/562 (45%), Gaps = 76/562 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A+KVF+     +VF WN ++   +     ++V  L+  M+     PN +T+  V KAC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 146 TEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            +     V QVH+     G      V +  I +Y+  G +  A+++ +     D++ W A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 205 LIDGYLKCGDIEGAKELF--------------------KSTKDK---------------- 228
           +I G  + G  E A  LF                     STK +                
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 229 -NTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            ++ +Y  N +++ ++R  +   A ++F+ MN +D ++++++I G  + G+   ALE+F 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +MQRD +KP    ++ +L+ACAS+GAL +G+ +H H  +  +  D +L  +L+D+Y+KC 
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++ A K F   + + +  WN M+          D+ E+F +MQ E M P++ T+  +L 
Sbjct: 412 DVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILR 471

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
            C   G +  G Q  T++ +  G    V     ++D+  + G LA A  ++  +P E + 
Sbjct: 472 TCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDV 529

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV---------AKMRKLMKERGI 516
             W A++    +H    F E L ++  EME +  + D++         A +R L + + I
Sbjct: 530 VSWTAMIAGYVQHD--MFSEAL-QLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 517 KTNP-----GSSMIDVNGVIHEF-RTGDGSHPQVKEIYLMLKKIIEK-----------LK 559
                    G+ +   N +I  + R G     +++E YL  +KI +K           L 
Sbjct: 587 HAQSYAAGFGADLSINNALISLYARCG-----RIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 560 MEGYSPNSSQVLFDIDEEEKET 581
             GY   + QV   +   E E 
Sbjct: 642 QSGYFEEALQVFVRMLRTEAEV 663



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 223/469 (47%), Gaps = 43/469 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H +++K G   + YV   LV  ++ SR      A ++F++++  +   +NS++   +
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSR--KLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     R + L+++M     KP+  T  ++  AC+   A  +G+Q+H+H +K G+  D+ 
Sbjct: 339 QQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADII 398

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           ++ S + +Y+    V  A +        +++ WN ++  Y +  ++  + E+F+  + + 
Sbjct: 399 LEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                   + +I  +A++G+   A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++   + + D ++W+A+I GY +   + EAL++F EM+   I+      +  ++ACA + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL QG  IH          D  +  AL+ +YA+CGR+  A+  FE +  K   +WN+++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           GLA  G  ++A+++F +M R +   +  T+   +SA A    I +G Q +  M    G D
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYD 697

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            E E    ++ L  ++G +++A    + M  E N   W A++    +HG
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHG 745



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 213/483 (44%), Gaps = 55/483 (11%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           ++ ++KQ H+     G      V+  L+  ++ + +   E A KVFN +   ++  W ++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAM 232

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +    ++      I L+ +M   +  P  +   +V  A +  +  + G Q+H  V+K G 
Sbjct: 233 ISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF 292

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF-K 223
             + +V +  + +Y+    +  A +I    +  D + +N+LI G ++ G  + A ELF K
Sbjct: 293 HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 224 STKD---------------------------------KNTGSYNAMISG-----FARFGR 245
             +D                                 K   S + ++ G     +++   
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCAD 412

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E A K F     ++ + W+ ++  Y +     ++ E+F +MQ + + P +F    +L  
Sbjct: 413 VETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C SLGAL  G  IH HV +    ++  + + L+DMYAK G+L +A ++   +   +V +W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            AMI G   H    +A++LF +M+   ++ D I FA  +SACA       G++AL   QQ
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA-------GIRALRQGQQ 585

Query: 426 MY------GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           ++      G   ++     ++ L  R G + EA      +  + N   W +L+    + G
Sbjct: 586 IHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSG 644

Query: 480 EVE 482
             E
Sbjct: 645 YFE 647



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 138/309 (44%), Gaps = 10/309 (3%)

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFE 247
           + G +S+   +  L++G L  G +     L     KS  D      ++++  + R G   
Sbjct: 51  ERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQH 110

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            A K+F+E +++   +W+ +I  +       +   +F  M  + I P  +  + VL AC 
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV 170

Query: 308 SLG-ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
               A +    +H            ++   L+D+Y+K G ++ A KVF  + MK++ TW 
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWV 230

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI GL+ +G  ++AI LF  M   ++ P     + VLSA     + + G Q L  +   
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIK 289

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           +G   E      +V L  R+  L  AE + S+M    +   + +L+    + G   F +R
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQG---FSDR 345

Query: 487 LGKILLEME 495
             ++  +M+
Sbjct: 346 ALELFTKMQ 354



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 120/272 (44%), Gaps = 13/272 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA    +G   D  ++  L+  +A  R    + A   F  +   N   WNS++    
Sbjct: 584 QQIHAQSYAAGFGADLSINNALISLYA--RCGRIQEAYLAFEKIGDKNNISWNSLVSGLA 641

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + ++  M+  +++ N FTY +   A +     K+G Q+H+ V+K G   +  
Sbjct: 642 QSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSERE 701

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-- 227
           V +S I +YA  G ++ A +  +D S+ +VI WNA+I GY + G    A  LF+  K   
Sbjct: 702 VSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG 761

Query: 228 --KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  ++  ++S  +  G  +E    F  M    ++      +  ++D   + G    A
Sbjct: 762 IMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRA 821

Query: 281 LEVFNEM--QRDKIKPRKFVLSCVLAACASLG 310
           +E   EM    D +  R  + +CV+     +G
Sbjct: 822 MEYIKEMPIPADAMIWRTLLSACVIHKNIEIG 853



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           +++ N M+   ++        +L  C + G+L + + +H  + ++    + +L  +LVD 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y + G    A KVF++   + VF+WN MI              LF +M  E + P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQM------YGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           A VL AC    +      A  Y++Q+      YG D        ++DL  + GY+  A++
Sbjct: 163 AGVLKACVGGDI------AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 455 VISSMPMEPNAAVWEALLGACRKHG 479
           V + + M+ +   W A++    ++G
Sbjct: 217 VFNCICMK-DIVTWVAMISGLSQNG 240


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 333/603 (55%), Gaps = 51/603 (8%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVD 128
           T++  H  S     +LA   F  + + +V  WN+++    +H      + ++S+M+    
Sbjct: 216 TMISSHMQSGL--VDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSS 273

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           SKP+KFT  +   AC+  E  K G Q+HAH+++                +  FG V    
Sbjct: 274 SKPDKFTLASALSACANLENLKLGKQIHAHIIRTE--------------FDTFGAVG--- 316

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG--SYNAMISGFARFGRF 246
                         NALI  Y K G +E A+++ + +   N    ++ A++ G+ + G  
Sbjct: 317 --------------NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDI 362

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             AR++F+ +  +D + W+A+I GY ++G+ ++A+E+F  M ++  KP  + L+ +L+  
Sbjct: 363 NPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVS 422

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTW 365
           +SL +LD G  IH    R+       +  AL+ MYAK G ++ A  VF  +  K +  TW
Sbjct: 423 SSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITW 482

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            +MI  LA HG  ++A+ LF +M    ++PD IT+  VLSAC H G++++G      MQ 
Sbjct: 483 TSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQN 542

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            + I P   HY C++DL GRAG L EA   I +MP+EP+   W +LL +C+ H  VE  E
Sbjct: 543 AHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAE 602

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
              + LL +EP+N               + ++ A +RK MK++G+K + G S + +   +
Sbjct: 603 VAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKV 662

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F   DG HPQ   IY M+ KI +++K  G+ P++  VL D++EE KE    +HSEKLA
Sbjct: 663 HIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLA 722

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAFG I T    T+R++KNLRVC DCHSA K ISK+  R+IIVRD  R+HHF+NG CSC 
Sbjct: 723 IAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCR 782

Query: 652 DFW 654
           D+W
Sbjct: 783 DYW 785



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 199/445 (44%), Gaps = 66/445 (14%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A +VF  + +P+   W +++    +  +    I ++ EMV  D  P +FT   V  +
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+  E    G +VH+ VVK+GL   + V +S + MYA  G    A+ + D         W
Sbjct: 155 CAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSW 214

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N +I  +++ G ++ A+  F+   +++  S+NAMISG                       
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISG----------------------- 251

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
                   Y + G+ +EAL++F++M  D   KP KF L+  L+ACA+L  L  G  IH H
Sbjct: 252 --------YNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAH 303

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWK----------------------------- 352
           + R        +G AL+ MY+K G +++A K                             
Sbjct: 304 IIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDIN 363

Query: 353 ----VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
               +F+ +++++V  W AMI G   +G   DA+ELF  M +E  +P+  T A +LS  +
Sbjct: 364 PARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSS 423

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
               +D G Q +       G    V     ++ +  ++G + +A  V + +  + +   W
Sbjct: 424 SLASLDHGRQ-IHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITW 482

Query: 469 EALLGACRKHGEVEFGERLGKILLE 493
            +++ A  +HG  E    L + +LE
Sbjct: 483 TSMIIALAQHGLGEEALTLFERMLE 507



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 167/336 (49%), Gaps = 42/336 (12%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
           +I+  G    V   N L++ Y K G I  A  +F     K+  S+N ++SG+A+ GR EE
Sbjct: 38  RIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEE 97

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A ++F EM + D ++W+A+I GY + G ++ A+ +F EM  D + P +F L+ VLA+CA+
Sbjct: 98  AHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAA 157

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR---------------------- 346
           +  L  G  +H  V ++ +     +  +L++MYAK G                       
Sbjct: 158 VECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTM 217

Query: 347 ---------LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPD 396
                    +D+A   FE M  ++V +WNAMI G   HG   +A+++F KM  +   +PD
Sbjct: 218 ISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPD 277

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI----VDLLGRAGYLAEA 452
           + T A  LSACA+   +  G Q   ++     I  E + +G +    + +  ++G +  A
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHI-----IRTEFDTFGAVGNALISMYSKSGGVEIA 332

Query: 453 EEVI-SSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           +++I  SM    +   + ALL    K G++    R+
Sbjct: 333 QKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRI 368



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 20/224 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWNSVLR 106
           H +Q HA   +SG+     VS  L+  +A S   +   A  VFN +H K +   W S++ 
Sbjct: 430 HGRQIHASATRSGNASSVSVSNALITMYAKS--GSINDARWVFNLIHWKRDTITWTSMII 487

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  +H      ++L+  M+    KP+  TY  V  AC+     ++G   +       L  
Sbjct: 488 ALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYY------NLMQ 541

Query: 167 DVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGA 218
           + H        YAC        G + +A   +++   + DVI W +L+       ++E A
Sbjct: 542 NAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELA 601

Query: 219 K---ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           +   E     + +N+G+Y+A+ + ++  G++E A  +   M DK
Sbjct: 602 EVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDK 645



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 89/199 (44%), Gaps = 33/199 (16%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH  + +  + +   L   L++ YAK G +  A +VF++M +K VF+WN ++ G A  GR
Sbjct: 35  IHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGR 94

Query: 378 A-------------------------------DDAIELFFKMQREKMRPDRITFACVLSA 406
                                           ++AI +F +M  + + P + T   VL++
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           CA    +  G +  +++ + +G+   +     ++++  ++G    A+ V   M ++  ++
Sbjct: 155 CAAVECLGIGRKVHSFVVK-HGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS 213

Query: 467 VWEALLGACRKHGEVEFGE 485
            W  ++ +  + G V+  +
Sbjct: 214 -WNTMISSHMQSGLVDLAQ 231


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 322/583 (55%), Gaps = 41/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  VF  V      VWN+++   +          L+  MV      ++FT+ +V  AC+ 
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G  VH  +               I++   F  V +A   ++          NAL
Sbjct: 307 VGLFAHGKSVHGQI---------------IRLQPNF--VPEAALPVN----------NAL 339

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           +  Y KCG+I  A+ +F +   K+  S+N ++SG+      ++A ++F EM  K+E++W 
Sbjct: 340 VTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWM 399

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            ++ GY   G+ ++AL++FN+M+ + +KP  +  +  +AAC  LGAL  G  +H H+ + 
Sbjct: 400 VMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQL 459

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
                   G AL+ MYA+CG +  A  +F  M   +  +WNAMI  L  HG   +A+ELF
Sbjct: 460 GFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELF 519

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M  E + PDRI+F  VL+AC H+G++D G +    M++ +GI P  +HY  ++DLLGR
Sbjct: 520 DRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGR 579

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD--- 502
           AG + EA ++I +MP EP  ++WEA+L  CR  G++E G      L +M PQ+       
Sbjct: 580 AGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILL 639

Query: 503 -----------DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                      D A++RKLM++RG+K  PG S I+    +H F  GD  HP+  E+Y  L
Sbjct: 640 SNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFL 699

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           + +  K++  GY P++  VL D++  +KE     HSE+LA+ FG +N  PGAT+ V+KNL
Sbjct: 700 EMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNL 759

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C+DCH+A   +SK   R+I+VRD  R+HHF++G+CSC ++W
Sbjct: 760 RICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 159/335 (47%), Gaps = 40/335 (11%)

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG---AKELFKSTKDKNTGSYNAMISG 239
           C      +L  G+   +   NAL+  Y+KC   E    A+++     +K+  ++  M+ G
Sbjct: 178 CAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVG 237

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G    AR +F E++ K ++ W+A+I GY   G   EA E+F  M  +++   +F  
Sbjct: 238 YVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTF 297

Query: 300 SCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL--GTALVDMYAKCGRLDMAWKVFE 355
           + VL+ACA++G    G  +H  + R   +   +A L    ALV  Y+KCG + +A ++F+
Sbjct: 298 TSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFD 357

Query: 356 DMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIEL 384
           +M +K+V +WN                                M+ G    G A+DA++L
Sbjct: 358 NMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKL 417

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F KM+ E ++P   T+A  ++AC   G +  G Q   ++ Q+ G +        ++ +  
Sbjct: 418 FNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQL-GFEGSNSAGNALITMYA 476

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           R G + EA  +   MP   ++  W A++ A  +HG
Sbjct: 477 RCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHG 510



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 57/346 (16%)

Query: 24  IPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN---- 77
           +P  EF+  ++L    + C     + H K  H  I++    Q ++V    +  +      
Sbjct: 290 VPLDEFTFTSVL----SACANVGLFAHGKSVHGQIIR---LQPNFVPEAALPVNNALVTF 342

Query: 78  -SRFSNFELALKVFNSVHKPNVFVWNSVLR-----ACLEH-----------NE-PWRV-- 117
            S+  N  +A ++F+++   +V  WN++L      +CL+            NE  W V  
Sbjct: 343 YSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMV 402

Query: 118 ------------ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
                       + L+++M   + KP  +TY     AC    A K G Q+H H+V+ G  
Sbjct: 403 SGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFE 462

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           G     ++ I MYA  G V +A  +       D + WNA+I    + G    A ELF   
Sbjct: 463 GSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRM 522

Query: 226 KDKNTG----SYNAMISGFARFGRFEEARKLFNEMND-----KDEITWSAIIDGYTKDGY 276
             +       S+  +++     G  +E  + F  M         E  ++ +ID   + G 
Sbjct: 523 VAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGR 582

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
             EA ++   M     +P   +   +L+ C + G ++ G    D +
Sbjct: 583 IGEARDLIKTM---PFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 322/610 (52%), Gaps = 63/610 (10%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN  LR     +     ISLY  M+   S P+ F++P + K+C+       G Q+H HV 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD--VICWNALIDGYLKCGDIEGA 218
           K G   +  V ++ I MY   G V  AR++ ++  +S    +C+NALI GY     +  A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 219 KELFKSTK---------------------------------------DKNTGSYNAMISG 239
             +F+  K                                       D      N+ I+ 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G  E  R+LF+EM  K  ITW+A+I GY+++G   + LE++ +M+   + P  F L
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             VL++CA LGA   G  +   V+ N    +  +  A + MYA+CG L  A  VF+ M +
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPV 320

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           K + +W AMIG   MHG  +  + LF  M +  +RPD   F  VLSAC+H+G+ D+GL+ 
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M++ Y ++P  EHY C+VDLLGRAG L EA E I SMP+EP+ AVW ALLGAC+ H 
Sbjct: 381 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHK 440

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
            V+  E     ++E EP N              +  + + ++R +M+ER  +  PG S +
Sbjct: 441 NVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 500

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE-EEKETAPK 584
           +  G +H F  GD SH Q +E++ ML + +E   ME  + N      D D  EE  +  +
Sbjct: 501 EHKGRVHLFLAGDRSHEQTEEVHRMLDE-LETSVME-LAGN-----MDCDRGEEVSSTTR 553

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSE+LAIAFG +N+ PG  I VIKNLRVCEDCH   K +SK+  R  +VRD  R+H+F+
Sbjct: 554 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFK 613

Query: 645 NGKCSCNDFW 654
           +G CSC D+W
Sbjct: 614 DGVCSCKDYW 623



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 12/234 (5%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + E   ++F+ +    +  WN+V+    ++   + V+ LY +M      P+ FT  +V  
Sbjct: 206 SVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLS 265

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           +C+   A K G +V   V  NG   +V V ++ I MYA  G + KAR + D      ++ 
Sbjct: 266 SCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS 325

Query: 202 WNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           W A+I  Y   G  E    LF    K     +   +  ++S  +  G  ++  +LF  M 
Sbjct: 326 WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            + ++      +S ++D   + G   EA+E    M    ++P   V   +L AC
Sbjct: 386 REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESM---PVEPDGAVWGALLGAC 436


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/540 (38%), Positives = 313/540 (57%), Gaps = 20/540 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+  +Y T+   C     D +G +    +  +    DV   ++ +   +  G V +A+ +
Sbjct: 78  PDVVSYNTLL-LCHFASGDADGAR---RLFASMPVRDVASWNTMVSGLSKSGAVEEAKVV 133

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS-YNAMISGFARFGRFEEA 249
                  + + WNA++ G+   GD+  A+E F++  +K     + AM+SG+   G   +A
Sbjct: 134 FLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKA 193

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
            K F  M  ++ ++W+A++ GY K+ +  +AL +F  M R+  ++P    LS VL  C++
Sbjct: 194 IKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L AL  G  IH    +  +  +  +GT+LV MY KCG L  A  +F +M  ++V  WNAM
Sbjct: 254 LSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAM 313

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G A HG   +AI LF +M+ E + P+ ITF  VL+AC H G+ D G+Q    MQ++YG
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYG 373

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P V+HY C+VDLL RAG L  A + I SMP EP+ + +  LL ACR +  +EF E   
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 433

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             L+E +PQ+               + DDV+++R+ MK+  +   PG S I++ GV+HEF
Sbjct: 434 GKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEF 493

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
           R+ D  HPQ+  I+  L ++ E++K  GY P+   VL D+DE  K      HSEKLAIAF
Sbjct: 494 RSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAF 553

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T  G T+R+ KNLRVC DCH+A K+IS +  R+II+RD  R+HHFR G CSC+D+W
Sbjct: 554 GLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 41/300 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G +  AR + D     DV+ +N L+  +   GD +GA+ LF S   ++  S+N M+SG +
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLS 122

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G  EEA+ +F  M  ++ ++W+A++ G+   G    A E F         P K     
Sbjct: 123 KSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRN------APEK----- 171

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
                                       DAVL TA+V  Y   G +  A K FE M ++ 
Sbjct: 172 ---------------------------EDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRN 204

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQAL 420
           + +WNA++ G   +  ADDA+ LF  M RE  ++P+  T + VL  C++   +  G Q  
Sbjct: 205 LVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIH 264

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            +  ++  +   +     +V +  + G L+ A  +   M    +   W A++    +HG+
Sbjct: 265 QWCMKLL-LSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR-DVVAWNAMISGYAQHGD 322



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 17/237 (7%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVF 140
           N   A+K F ++   N+  WN+V+   ++++     + L+  MV   + +PN  T  +V 
Sbjct: 189 NVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
             CS   A   G Q+H   +K  L  ++ V +S + MY   G ++ A  +  +    DV+
Sbjct: 249 LGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVV 308

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMI-----SGFARFGR--FEEA 249
            WNA+I GY + GD + A  LF+  KD+    N  ++  ++     +G   FG   FE  
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGM 368

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++L+      D   +S ++D   + G  + A++    M     +P       +LAAC
Sbjct: 369 QELYGIEPRVDH--YSCMVDLLCRAGKLERAVDFIRSM---PFEPHPSAYGTLLAAC 420


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 346/623 (55%), Gaps = 53/623 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  I+K+G  Q   +S  L+  +        + AL +FN +   +   W S+L A  
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGL--IQDALNLFNQLPHRDPISWASILTANN 80

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + N P   +S++  M   D  +P+ + +  + KAC+I  A K+G QVHA  + + +  D 
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            VKSS + MYA                               KCG  +  + +F S   K
Sbjct: 141 VVKSSLVDMYA-------------------------------KCGLPDIGRVVFDSISSK 169

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           N+ S+ AMISG+A+ GR  +A +LF +M  K+ ++W+A+I G  + G + ++  +F EM+
Sbjct: 170 NSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMR 229

Query: 289 R---DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
               D + P  F+LS ++ A A+L  L  G  IH  V          +  ALVDMYAKC 
Sbjct: 230 SKGIDIVDP--FILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCS 287

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A K+F  M  +++ +W ++I G A HG A++A+ L+ +M    ++P+ +TF  ++ 
Sbjct: 288 DVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIY 347

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H G++ +G      M + YGI+P ++HY C++DLL R+G+L EAE +I +MP +P+ 
Sbjct: 348 ACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDE 407

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLM 511
           A W ALL AC  H     G R+   LL ++P++                 + V+K+R+LM
Sbjct: 408 ATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLM 467

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
               +K  PG S I +      F  G+ SHP  +EI+ +L+++  ++K  GY P++S VL
Sbjct: 468 AAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVL 527

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++++EKE    +HSE+LA+A+G +   PG  + ++KNLRVC DCH+  K IS + KR+
Sbjct: 528 HDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKRE 587

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I+VRD  RYHHF++GKCSCN+FW
Sbjct: 588 IVVRDANRYHHFKDGKCSCNNFW 610



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L ACA   +   G  +H H+ +  I     L   L++MY KCG +  A  +F  +  ++ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQA-L 420
            +W +++            + +F  M +++ ++PD   FAC++ ACA  G + +G Q   
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           T++      D  V+    +VD+  + G L +   V+       N+  W A++      G 
Sbjct: 130 TFIVSPVSDDDVVK--SSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMIS-----GY 181

Query: 481 VEFGERLGKILL 492
            + G +L  I L
Sbjct: 182 AQSGRKLDAIQL 193


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 324/577 (56%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y     AC+ ++   +  ++H H+  +   GD  + +S I +Y   G V +A ++
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 191 LDDGSKSDVICWNALIDGYLK-------CGDIEGA-KELFK------STKDKNTGSY--- 233
            D   K D++ W +LI GY +        G + G  K  FK      ++  K  G+Y   
Sbjct: 109 FDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 234 ----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                 +A++  +AR G+ + A  +F++++ K+ ++W+A+I G+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G  + AL VF EMQR+  +   F  S + +  A +GAL+QG W+H H+ ++   + A
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +G  ++DMYAK G +  A KVFE +  K++ TWN+M+   A +G   +A+  F +M++ 
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            +  ++ITF C+L+AC+H G++  G      +++ Y ++PE+EHY  +VDLLGRAG L  
Sbjct: 349 GIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDLLGRAGLLNY 407

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   I  MPMEP AAVW ALL ACR H   + G+     + +++P +             
Sbjct: 408 ALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYAS 467

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
               D  A++RK+MK  G+K  P  S +++   +H F   D +HP+ +EIY M  +I  K
Sbjct: 468 TGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMK 527

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ EGY P+   VL  +DE+E+E   +YHSEK+A+AF  I    GATIR++KN+R+C DC
Sbjct: 528 IRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDC 587

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA K ISKVF+R+I+VRD  R+HHF NG CSC D+W
Sbjct: 588 HSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 161/363 (44%), Gaps = 43/363 (11%)

Query: 57  LKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           L S  F+ D ++  +L+  H   +  +   A KVF+ + K ++  W S++    +++ P 
Sbjct: 77  LASSRFEGDAFLDNSLI--HLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPA 134

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
             I L   M+    KPN FT+ ++ KA         G Q+HA  VK     DV+V S+ +
Sbjct: 135 EAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALL 194

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTG 231
            MYA  G ++ A  + D     + + WNALI G+ + GD E A  +F   +    +    
Sbjct: 195 DMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHF 254

Query: 232 SYNAMISGFARFGRFEE-----------------------------------ARKLFNEM 256
           +Y+++ SG A  G  E+                                   ARK+F  +
Sbjct: 255 TYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
            +KD +TW++++  + + G  KEA+  F EM++  I   +    C+L AC+  G + +G 
Sbjct: 315 LNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGK 374

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMH 375
              D +K  ++  +      +VD+  + G L+ A      M M+     W A++    MH
Sbjct: 375 HYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434

Query: 376 GRA 378
             A
Sbjct: 435 KNA 437



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 7/216 (3%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           L   + +   ++ P   V    + ACA    LD    IH H+  +    DA L  +L+ +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y KCG +  A KVF+ M+ K++ +W ++I G A +    +AI L   M + + +P+  TF
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSM 459
           A +L A       D G+    +   +     E  + G  ++D+  R G +  A  V   +
Sbjct: 156 ASLLKAA--GAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
               N   W AL+    + G+   GE    +  EM+
Sbjct: 214 D-SKNGVSWNALISGFARKGD---GETALMVFAEMQ 245


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/658 (32%), Positives = 356/658 (54%), Gaps = 57/658 (8%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H + +K G  ++  V+ +L+  ++  RF     A  +F+   K N+  WNS++      
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKCRF--LSEAQLLFDKNDKKNIVSWNSMIGGYARE 283

Query: 112 NEPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  R   L  +M   D+K   ++FT   V   C      +   ++H +  ++GL  +  
Sbjct: 284 EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNEL 343

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V ++ I  Y   G +  + ++ D      V  WNAL+ GY +  D   A +L+    D  
Sbjct: 344 VANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 403

Query: 229 ------NTGS------------YNAMISGFAR--------------------FGRFEEAR 250
                   GS            Y   I GFA                      G+   A+
Sbjct: 404 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQ 463

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LF+ M  +  ++W+ +I GY+++G   EA+ +F +M  D I+P +  + CV  AC+ L 
Sbjct: 464 VLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLS 523

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G  +H    +  +  D  + ++++DMYAK G + ++ ++F+ ++ K+V +WN +I 
Sbjct: 524 ALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIA 583

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G  +HGR  +A+ELF KM R  ++PD  TF  +L AC+HAG+++ GL+    M  ++ I+
Sbjct: 584 GYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIE 643

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHY C+VD+LGRAG + +A  +I  MP +P++ +W +LL +CR HG +  GE++   
Sbjct: 644 PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANK 703

Query: 491 LLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           LLE+EP+              + + DDV ++R  MK+ G++ + G S I+V G +H F  
Sbjct: 704 LLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLI 763

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD   P+++E+    +++  K+   GY+P++  VL D++EE+K    + HSEKLAI+FG 
Sbjct: 764 GDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGL 823

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G  +RV KNLR+C DCH+A K ISKV  RDI+VRD  R+HHFR+G CSC D+W
Sbjct: 824 LNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 217/470 (46%), Gaps = 47/470 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H +  K     D +V   L+  +        E A+KVF  + + N+  WNS++    E+ 
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGL--VEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 113 EPWRVISLYSEM-VGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                 + + EM VG +S  P+  T  TV   C+  E  ++G+ VH   VK GL  ++ V
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMV 241

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY--------------------- 209
            +S I MY+    +++A+ + D   K +++ WN++I GY                     
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301

Query: 210 ----------------LKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
                           L+  +++  KEL    ++     N    NA I+ + R G    +
Sbjct: 302 KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS 361

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            ++F+ M+ K   +W+A++ GY ++   ++AL+++ +M    + P  F +  +L AC+ +
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            +L  G  IH    RN + VD  +G +L+ +Y  CG+   A  +F+ M+ + + +WN MI
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 481

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G + +G  D+AI LF +M  + ++P  I   CV  AC+    +  G +   +  + + +
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-L 540

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             ++     I+D+  + G +  ++ +   +  E + A W  ++     HG
Sbjct: 541 TEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIHG 589



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 179/384 (46%), Gaps = 51/384 (13%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITE 147
           VF+ + + N+F WN+++ A   +      +S++SE++ V + KP+ FT P V KAC+   
Sbjct: 56  VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 115

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G  +H    K  L  DV V ++ I MY   G V +A ++ +   + +++ WN++I 
Sbjct: 116 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIIC 175

Query: 208 GYLKCGDIEGAKELFKST------------------------KDKNTGSY---------- 233
           G+ + G ++ +   F+                          +D   G            
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235

Query: 234 -------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  N++I  +++     EA+ LF++ + K+ ++W+++I GY ++        +  +
Sbjct: 236 NEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQK 295

Query: 287 MQRD--KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           MQ +  K+K  +F +  VL  C     L     +H +  R+ +  + ++  A +  Y +C
Sbjct: 296 MQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRC 355

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L  + +VF+ M  K V +WNA++ G A +     A++L+ +M    + PD  T   +L
Sbjct: 356 GALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 415

Query: 405 SACAHAGMIDRGLQALTYMQQMYG 428
            AC+        +++L Y ++++G
Sbjct: 416 LACSR-------MKSLHYGEEIHG 432



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 145/281 (51%), Gaps = 13/281 (4%)

Query: 212 CG---DIEGAKELFK----STKDKNTGSYNA-MISGFARFGRFEEARKLFNEMNDKDEIT 263
           CG   DIE  + L +    ST+  N    N  +I+ ++  G   ++R +F+++  K+   
Sbjct: 8   CGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 264 WSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           W+AI+  YT++  +++A+ +F+E+    + KP  F L CV+ ACA L  L  G  IH   
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            +  +  D  +G AL+ MY KCG ++ A KVFE M  + + +WN++I G + +G   ++ 
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 383 ELFFKM--QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
             F +M    E   PD  T   VL  CA    I++G+ A+  +    G++ E+     ++
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGM-AVHGLAVKLGLNEELMVNNSLI 246

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           D+  +  +L+EA+ +      + N   W +++G   +  +V
Sbjct: 247 DMYSKCRFLSEAQLLFDKND-KKNIVSWNSMIGGYAREEDV 286



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 164/383 (42%), Gaps = 53/383 (13%)

Query: 138 TVFKACSITEADKEGVQVHAHV-VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            + +AC   +  + G ++H  V      C D  + +  I MY+  G  + +R + D   +
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFK---STKDKNTGSY-------------------- 233
            ++  WNA++  Y +    E A  +F    S  +    ++                    
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 234 -----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                            NA+I+ + + G  EEA K+F  M +++ ++W++II G++++G+
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 277 YKEALEVFNEM--QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
            +E+   F EM    +   P    L  VL  CA    +++G+ +H    +  +  + ++ 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF---KMQRE 391
            +L+DMY+KC  L  A  +F+    K + +WN+MIGG A   R +D    F+   KMQ E
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA---REEDVCRTFYLLQKMQTE 299

Query: 392 --KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
             KM+ D  T   VL  C     + + L+ L      +G+          +    R G L
Sbjct: 300 DAKMKADEFTILNVLPVCLERSEL-QSLKELHGYSWRHGLQSNELVANAFIAAYTRCGAL 358

Query: 450 AEAEEVISSMPMEPNAAVWEALL 472
             +E V   M  +   + W ALL
Sbjct: 359 CSSERVFDLMDTK-TVSSWNALL 380


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/703 (32%), Positives = 370/703 (52%), Gaps = 103/703 (14%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSR-----FSNFELALKVFNSVHKPNVFVWN 102
            L + H++I+  G       S  L+  +A+ R     FS F LA          NV++WN
Sbjct: 31  QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP------SNNVYLWN 84

Query: 103 SVLRACLEHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           S++RA L HN  +   +SLYSE   +  +P+ +T+P+V  AC+     +    +H  V+ 
Sbjct: 85  SIIRA-LTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------ 209
            G   D+++ ++ I MY  F  ++KAR++ ++    DV+ WN+LI GY            
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203

Query: 210 --------------------------LKC---GDIEGAK----ELFKSTKDKNTGSYNAM 236
                                       C   GD+E  K     +  S  + +T + N +
Sbjct: 204 YYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNIL 263

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPR 295
           I+ +A+ G    ++++F+ M  KD ++W+++I+ Y ++G   ++L+VF  M+ RD I   
Sbjct: 264 INMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWN 323

Query: 296 KFVLSCV------------------------------LAACASLGALDQGIWIHDHVKRN 325
             + SCV                              L  C+ L A  QG  IH  + + 
Sbjct: 324 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 383

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  D  +G  L++MY+KCG L  +++VF+ MK K+V TW A+I    M+G    A+  F
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 443

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M+   + PD + F  ++ AC+H+G+++ GL     M++ Y I+P +EHY C+VDLL R
Sbjct: 444 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 503

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           +  L +AE+ I SMP++P++++W ALL ACR  G+ E  ER+ + ++E+ P +       
Sbjct: 504 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 563

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   + D V  +RK +K RG+K +PG S +++   ++ F TG     Q +E+  +L
Sbjct: 564 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 623

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
             +   +  EGY  N   VL DIDE+EK      HSE+LAIAFG +NT PG  ++V+KNL
Sbjct: 624 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNL 683

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVCEDCH+ TK ISK+ +R+++VRD  R+H F++G CSC D+W
Sbjct: 684 RVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 322/577 (55%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y ++  AC+ ++       +H+H+ ++ L GD  + +S I MY   G V+ AR +
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 191 LDDGSKSDVICWNALIDGY-------------------------------LKCGDIEGAK 219
            D     DV+ W  LI GY                               LK     G +
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 220 EL--------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
            +         K   D++    +A++  +AR  + + A ++F+ ++ K+E++W+A+I G+
Sbjct: 180 GIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF 239

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G  +  L  F EMQR+      F  S V +A A +GAL+QG W+H H+ ++   + A
Sbjct: 240 ARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTA 299

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +   ++ MYAK G +  A KVF+ +  +++ TWN M+   A +G   +A+  F ++++ 
Sbjct: 300 FVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKY 359

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            ++ ++ITF  VL+AC+H G++  G Q    M+  Y ++PE++HY   VDLLGRAG L E
Sbjct: 360 GIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKE 418

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   +  MPMEP AAVW ALLGACR H   + G+     + E++P++             
Sbjct: 419 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYAS 478

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             + DD A++RK+MK  G+K  P  S +++   +H F   D +HP+ +EIY M +++  +
Sbjct: 479 TGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTR 538

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           +K  GY PN+  VL  I E+E+ET  +YHSEK+A+AF  IN   GATIR++KN+R+C DC
Sbjct: 539 IKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDC 598

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA + +S+VFKR+I+VRD  R+HHF NG CSC D+W
Sbjct: 599 HSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 43/358 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  VF+ +   +V  W  ++    +++ P   + L  +M+    +P+ FT+ +  KA   
Sbjct: 116 ARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGA 175

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G Q+HA  VK  L  DV+V S+ + MYA    ++ A ++ D     + + WNAL
Sbjct: 176 CGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNAL 235

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEE------------- 248
           I G+ + GD E     F   +    G    +Y+++ S  AR G  E+             
Sbjct: 236 IAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQ 295

Query: 249 ----------------------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                                 ARK+F+ ++ +D +TW+ ++  + + G  KEA+  F E
Sbjct: 296 KLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEE 355

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +++  I+  +     VL AC+  G + +G    D +K  ++  +     + VD+  + G 
Sbjct: 356 IRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGL 415

Query: 347 LDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRA---DDAIELFFKMQREKMRPDRITF 400
           L  A      M M+     W A++G   MH  A     A +  F++  E   P  + +
Sbjct: 416 LKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLY 473



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA+ +K    +D YV   L+  +A  R    ++A++VF+ +   N   WN+++    
Sbjct: 183 EQMHALAVKYNLDEDVYVGSALLDMYA--RCQQMDMAIRVFDWLDSKNEVSWNALIAGFA 240

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    +  ++EM         FTY +VF A +   A ++G  VHAH++K+G      
Sbjct: 241 RKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAF 300

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKST 225
           V ++ + MYA  G +  AR++ D   + D++ WN ++  + + G     +   +E+ K  
Sbjct: 301 VANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYG 360

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD---EIT-WSAIIDGYTKDGYYKEAL 281
              N  ++ ++++  +  G  +E ++ F+ M D +   EI  + + +D   + G  KEAL
Sbjct: 361 IQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEAL 420

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
               +M    ++P   V   +L AC        G +  DHV       D      L ++Y
Sbjct: 421 IFVFKM---PMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELD-PEDTGPPVLLYNIY 476

Query: 342 AKCGRLDMAWKVFEDMKMKEV 362
           A  G+ D A +V + MK   V
Sbjct: 477 ASTGQWDDAARVRKMMKATGV 497



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 4/193 (2%)

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
           ++ P   V   ++ ACA    L     IH H+ R+ +  D  L  +L+ MY KCG +  A
Sbjct: 57  ELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDA 116

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
             VF+ +  ++V +W  +I G A +    +A+ L   M R + RP   TF   L A    
Sbjct: 117 RHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGAC 176

Query: 411 GMIDRGL-QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           G   RG+ + +  +   Y +D +V     ++D+  R   +  A  V   +  + N   W 
Sbjct: 177 G--GRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSK-NEVSWN 233

Query: 470 ALLGACRKHGEVE 482
           AL+    + G+ E
Sbjct: 234 ALIAGFARKGDGE 246


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/643 (33%), Positives = 349/643 (54%), Gaps = 56/643 (8%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL------------------ 105
           D ++   L+  H  ++F     A  +F+ + K ++F WN++L                  
Sbjct: 57  DSFLHNQLL--HLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDR 114

Query: 106 ---RACLEHNE----------PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
              R  + +N           P   + L+  M     +P ++T  ++  A +     + G
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYG 174

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            Q+H  ++     G+V + ++   MYA  G + +AR + D  +K +++ WN +I GY K 
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 213 GDIEGAKELFKSTK------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
           G  E    L    +      D+ T S   +I+ + + GR +EAR++F+E  +KD + W+A
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQCGRVDEARRVFSEFKEKDIVCWTA 292

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++ GY K+G  ++AL +FNEM  + I+P  + LS V+++CA L +L  G  +H       
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG 352

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           +  + ++ +AL+DMY+KCG +D A  VF  M  + V +WNAMI G A +G   DA+ELF 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFE 412

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M ++K +PD +TF  +LSAC H   I++G +    +   +G+ P ++HY C+V+LLGR 
Sbjct: 413 NMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRT 472

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP---------- 496
           G + +A  +I +M  +P+  +W  LL  C   G++   E   + L E++P          
Sbjct: 473 GRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLS 532

Query: 497 ----QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                  R  DVA +R LMK + +K   G S I+++  +H F + D +HP+ ++IY  L 
Sbjct: 533 NMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLN 592

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG-ATIRVIKNL 611
            +I KL+ EG++PN++ VL D+ E+EK  +  +HSEKLA+AFG I    G + IR+IKN+
Sbjct: 593 MLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNI 652

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH   K  S++  R II+RD  R+HHF  GKCSCND W
Sbjct: 653 RICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 163/338 (48%), Gaps = 23/338 (6%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           +D    N L+  Y K G +  A+ LF     ++  S+NA++S +A+ G  +  +  F+ M
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +D ++++  I G++ +   +E+LE+F  MQR+  +P ++ +  +L A A L  L  G 
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGK 175

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  +   +   +  +  AL DMYAKCG ++ A  +F+ +  K + +WN MI G A +G
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           + +  I L  +M+     PD++T + +++A    G +D   +  +  ++      ++  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KDIVCW 290

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPM---EPNAAVWEALLGACRK-----HGEVEFGERL- 487
             ++    + G   +A  + + M +   EP++    +++ +C K     HG+   G+ + 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 488 ---------GKILLEMEPQNRRCDDVAKMRKLMKERGI 516
                       L++M  +    DD   +  LM  R +
Sbjct: 351 AGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 144/321 (44%), Gaps = 20/321 (6%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           SGH  D     T++  +        + A +VF+   + ++  W +++    ++      +
Sbjct: 250 SGHMPDQVTMSTIIAAYCQC--GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDAL 307

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            L++EM+    +P+ +T  +V  +C+   +   G  VH   +  GL  ++ V S+ I MY
Sbjct: 308 LLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYN 234
           +  G ++ AR + +     +V+ WNA+I G  + G  + A ELF++   +    +  ++ 
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQR 289
            ++S        E+ ++ F+ + ++  +T     ++ +++   + G  ++A+ +   M  
Sbjct: 428 GILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
           D   P   + S +L+ C++ G +        H+      + AV    L +MYA  GR   
Sbjct: 488 D---PDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI-AVPYIMLSNMYASMGRWKD 543

Query: 350 AWKVFEDMKMKEV-----FTW 365
              V   MK K V     F+W
Sbjct: 544 VASVRNLMKSKNVKKFAGFSW 564


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 356/715 (49%), Gaps = 115/715 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACL 109
           H +I  +G   + ++   LV  +  SR  + E A  +F+ + +    +V  WNS++ A +
Sbjct: 140 HGLICCNGFESNVFICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 197

Query: 110 EHNEPWRVISLYSEM-VGVDSKPNK-----FTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + +  W  + L+S+M + V  KP        +   +  AC   +A  +  +VH + ++NG
Sbjct: 198 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 257

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              DV V ++ I  YA  G +  A ++ +     DV+ WNA++ GY + G+ + A ELFK
Sbjct: 258 TFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK 317

Query: 224 STKDKNTG----SYNAMISGFARFGRFEEARKLFNEM----------------------- 256
           + + +N      ++ A+I+G+++ G   EA  +F +M                       
Sbjct: 318 NMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLG 377

Query: 257 --------------------------NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
                                      D+D + ++A+ID Y+K   +K A  +F+++  +
Sbjct: 378 AFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 437

Query: 291 K-----------------------------------IKPRKFVLSCVLAACASLGALDQG 315
           +                                   + P  + +SC+L ACA L A+  G
Sbjct: 438 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 497

Query: 316 IWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
             IH +V R+     +   +   L++MY+KCG +D A  VF+ M  K   +W +M+ G  
Sbjct: 498 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 557

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  +A+++F KM++    PD ITF  VL AC+H GM+D+GL     M   YG+ P  
Sbjct: 558 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 617

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY   +DLL R G L +A + +  MPMEP A VW ALL ACR H  VE  E     L+E
Sbjct: 618 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 677

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M  +N               R  DVA++R LMK+ GIK  PG S +        F  GD 
Sbjct: 678 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 737

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY +L+ +I+++K  GY P ++  L D+DEEEK      HSEKLA+A+G + T
Sbjct: 738 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 797

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR+ KNLRVC DCHSA   ISK+   +I+VRD  R+HHF+NG CSC  +W
Sbjct: 798 FPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 220/495 (44%), Gaps = 99/495 (20%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           + AL V   V       WN ++R  ++       I++   M+   ++ + FT P V KAC
Sbjct: 68  DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKAC 127

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK---SDVI 200
               + + G   H  +  NG   +V + ++ + MY+  G + +A  I D+ ++    DVI
Sbjct: 128 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 201 CWNALIDGYLKCGDIEGAKELF---------KSTKDKN---------------------- 229
            WN+++  ++K  +   A +LF         K T +++                      
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 230 --------TGSY------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                    G++      NA+I  +A+ G  E A K+FN M  KD ++W+A++ GY++ G
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 276 YYKEALEVFNEMQRDKIK-----------------------------------PRKFVLS 300
            +K A E+F  M+++ I                                    P    + 
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICV----------DAVLGTALVDMYAKCGRLDMA 350
            VL+ACASLGA  QG+ IH +  +N +            D ++  AL+DMY+KC     A
Sbjct: 368 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 427

Query: 351 WKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDRITFACVLSA 406
             +F+D+ ++E  V TW  MIGG A +G ++DA++LF +M  E   + P+  T +C+L A
Sbjct: 428 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 487

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           CAH   I  G Q   Y+ + +  D        C++++  + G +  A  V  SM  + +A
Sbjct: 488 CAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSA 546

Query: 466 AVWEALLGACRKHGE 480
             W +++     HG 
Sbjct: 547 ISWTSMMTGYGMHGR 561



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 31/288 (10%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            E F S +   TG    +++ +   G  + A  +   +     + W+ +I  + K G   
Sbjct: 44  SEPFISPRSLGTG----VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 99

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+ V   M R   +   F L  VL AC  L +   G   H  +  N    +  +  ALV
Sbjct: 100 SAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 159

Query: 339 DMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKM------Q 389
            MY++CG L+ A  +F+++  +   +V +WN+++        A  A++LF KM      +
Sbjct: 160 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 219

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG--------IDPEVEHYGCIVD 441
               R D I+   +L AC         L+A+   ++++G        +D  V +   ++D
Sbjct: 220 PTNERSDIISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALID 270

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
              + G +  A +V + M  + +   W A++    + G  +    L K
Sbjct: 271 AYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFK 317


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 337/625 (53%), Gaps = 58/625 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA  +++   QD  V+  L + +A S     +LA+ +      P    + S + A     
Sbjct: 44  HAAAVRASVDQDKAVAFRLQRAYAAS--GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101

Query: 113 EPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                ++L SEM+       P   T      AC        G  +H + VK  L G+ +V
Sbjct: 102 LHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAV---GRALHGYAVKLALSGEPYV 158

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            ++ + MYA  G    AR + D                                  D + 
Sbjct: 159 ATALLGMYARAGEAAAARALFDG------------------------------MRPDPHV 188

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S  AM+S +A+ G+ ++AR LF+ +  KD + W+A++DGYT+ G   EAL +F +M R 
Sbjct: 189 VSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRS 248

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHV----KRNSICVDAVLGTALVDMYAKCGR 346
            ++P +  +   L+A A LG  + G W+H  V    +R  + ++A +GTALVDMY KCG 
Sbjct: 249 GVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGS 308

Query: 347 LDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           L+ A  VF D+     ++V  WNAMI G AMHGR+ +A+E F +++ + + P  ITF  V
Sbjct: 309 LEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGV 368

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L+AC+H+G++D G      M++ YGI P+VEHYGC+VDLLGRAG + EA +++ SM  +P
Sbjct: 369 LNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKP 428

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILL--------------EMEPQNRRCDDVAKMRK 509
           +AA+W +LLGACR H  +  G+R+   L+               M     +  +V ++R 
Sbjct: 429 DAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRS 488

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           +M+  G++  PG S ++V   + EF  GD SHP+  EIY  L+++    +  G+ P++  
Sbjct: 489 MMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTEL 548

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL D+D+  KE A   HSEKLA+AFG I+T P   I+++KNLR C DCH+  KL+S+   
Sbjct: 549 VLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATG 608

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R I+ RDR R+HHF +G CSC D+W
Sbjct: 609 RKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 324/590 (54%), Gaps = 41/590 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  +   A  VF  V      VWN+++   ++         L+  MV      ++FT+ +
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+       G  VH  +               I++   F  V +A   ++      
Sbjct: 306 VLSACANAGFFVHGKSVHGQI---------------IRLQPNF--VPEAALPVN------ 342

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
               NAL+  Y K G I  AK +F +   K+  S+N ++SG+   G  ++A ++F  M  
Sbjct: 343 ----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 398

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K++++W  ++ GY   G  ++AL++FN+M+ + +KP  +  +  +AAC  LGAL  G  +
Sbjct: 399 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 458

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H H+ +         G AL+ MYAKCG ++ A  VF  M   +  +WNAMI  L  HG  
Sbjct: 459 HAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHG 518

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+ELF +M  E + PDRI+F  +L+AC HAG++D G      M++ +GI P  +HY  
Sbjct: 519 REALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 578

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGR+G + EA ++I +MP EP  ++WEA+L  CR +G++EFG      L  M PQ+
Sbjct: 579 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 638

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R  D A++RKLM++RG+K  PG S I+V   IH F  GD  HP+ 
Sbjct: 639 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 698

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +E+Y  L+ I  +++  GY P++  VL D++  EKE     HSEKLA+ FG +   PGAT
Sbjct: 699 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 758

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + V+KNLR+C DCH+A   +SK   R+I+VRD  R+HHF++G+CSC ++W
Sbjct: 759 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 159/335 (47%), Gaps = 40/335 (11%)

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG---AKELFKSTKDKNTGSYNAMISG 239
           C      +L  G+ + +   NALI  Y+KC   E    A+++     DK+  ++  M+ G
Sbjct: 184 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 243

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G    AR +F E++ K ++ W+A+I GY + G   +A E+F  M  +K+   +F  
Sbjct: 244 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 303

Query: 300 SCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL--GTALVDMYAKCGRLDMAWKVFE 355
           + VL+ACA+ G    G  +H  + R   +   +A L    ALV +Y+K G++ +A ++F+
Sbjct: 304 TSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFD 363

Query: 356 DMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIEL 384
            M +K+V +WN                                M+ G    G ++DA++L
Sbjct: 364 TMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKL 423

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E ++P   T+A  ++AC   G +  G Q   ++ Q  G +        ++ +  
Sbjct: 424 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLTMYA 482

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + G + +A  V   MP   ++  W A++ A  +HG
Sbjct: 483 KCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHG 516



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 43/310 (13%)

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND--KDEI 262
           LI  Y    D+     LF+S  D    +  ++++  A  GR  +A   F+ +    +D +
Sbjct: 69  LIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTV 128

Query: 263 TWSAIIDGYTKDGYYKEALEVFNE-MQRDKIKPRKFVLSCVLAACASLG--ALDQGIWIH 319
             +A++  + +      A+ VF+  +    ++P  +  + +++A   +   A      +H
Sbjct: 129 LHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLH 188

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAW---------------------------- 351
             V ++       +  AL+ +Y KC   + +W                            
Sbjct: 189 CSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRG 248

Query: 352 ------KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
                  VFE++  K    WNAMI G    G   DA ELF +M  EK+  D  TF  VLS
Sbjct: 249 DVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLS 308

Query: 406 ACAHAGMIDRGLQA---LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           ACA+AG    G      +  +Q  +  +  +     +V L  + G +  A+ +  +M ++
Sbjct: 309 ACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 368

Query: 463 PNAAVWEALL 472
            +   W  +L
Sbjct: 369 -DVVSWNTIL 377



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 159/388 (40%), Gaps = 62/388 (15%)

Query: 24  IPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYV-------SGTLVKC 74
           +P  EF+  ++L    + C  +  + H K  H  I++    Q ++V       +  LV  
Sbjct: 296 VPLDEFTFTSVL----SACANAGFFVHGKSVHGQIIR---LQPNFVPEAALPVNNALVTL 348

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVL-----RACLE------------HNEPWRV 117
           +  S+     +A ++F++++  +V  WN++L       CL+            ++  W V
Sbjct: 349 Y--SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMV 406

Query: 118 --------------ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
                         + L+++M   D KP  +TY     AC    A K G Q+HAH+V+ G
Sbjct: 407 MVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG 466

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                   ++ + MYA  G VN AR +       D + WNA+I    + G    A ELF 
Sbjct: 467 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 526

Query: 224 STK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKD 274
                  D +  S+  +++     G  +E    F  M     I+     ++ +ID   + 
Sbjct: 527 QMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRS 586

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   EA ++   M     +P   +   +L+ C + G ++ G +  D + R     D    
Sbjct: 587 GRIGEARDLIKTM---PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTY- 642

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEV 362
             L + Y+  GR   A +V + M+ + V
Sbjct: 643 ILLSNTYSAAGRWVDAARVRKLMRDRGV 670


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/715 (32%), Positives = 353/715 (49%), Gaps = 115/715 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACL 109
           H +I  +G   + ++   LV  +  SR  + E A  +F+ + +    +V  WNS++ A +
Sbjct: 185 HGLICCNGFESNVFICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 242

Query: 110 EHNEPWRVISLYSEM-VGVDSKPNK-----FTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + +  W  + L+S+M + V  KP        +   +  AC   +A  +  +VH + ++NG
Sbjct: 243 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 302

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILD------------------------------- 192
              DV V ++ I  YA  G +  A ++ +                               
Sbjct: 303 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 362

Query: 193 ----DGSKSDVICWNALIDGYLKCGDIEGAKELFKS------------------------ 224
               +    DV+ W A+I GY + G    A  LF+                         
Sbjct: 363 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 422

Query: 225 ------------------TKDKNTGS-------YNAMISGFARFGRFEEARKLFNE--MN 257
                             T D + G        YNA+I  +++   F+ AR +F++  + 
Sbjct: 423 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 482

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQG 315
           +++ +TW+ +I G+ + G   +AL++F EM  +   + P  + +SC+L ACA L A+  G
Sbjct: 483 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 542

Query: 316 IWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
             IH +V R+     +   +   L+DMY+KCG +D A  VF+ M  K   +W +M+ G  
Sbjct: 543 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 602

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  +A+++F KM++    PD ITF  VL AC+H GM+D+GL     M   YG+ P  
Sbjct: 603 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 662

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C +DLL R+G L +A   +  MPMEP A VW ALL ACR H  VE  E     L+E
Sbjct: 663 EHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 722

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M  +N               R  DVA++R LMK+ GIK  PG S +        F  GD 
Sbjct: 723 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 782

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY +L+ +I+++K  GY P ++  L D+DEEEK      HSEKLA+A+G + T
Sbjct: 783 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 842

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR+ KNLRVC DCHSA   ISK+   +I+VRD  R+HHF+NG CSC  +W
Sbjct: 843 SPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 220/495 (44%), Gaps = 99/495 (20%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           + AL V   V       WN ++R  ++       I++   M+   ++P+ FT P V KAC
Sbjct: 113 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 172

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK---SDVI 200
               + + G   H  +  NG   +V + ++ + MY+  G + +A  I D+ ++    DVI
Sbjct: 173 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232

Query: 201 CWNALIDGYLKCGDIEGAKELF---------KSTKDKN---------------------- 229
            WN+++  ++K  +   A +LF         K T +++                      
Sbjct: 233 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 292

Query: 230 --------TGSY------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                    G++      NA+I  +A+ G  E A K+FN M  KD ++W+A++ GY++ G
Sbjct: 293 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 276 YYKEALEVFNEMQRDKIK-----------------------------------PRKFVLS 300
            ++ A E+F  M+++ I                                    P    + 
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICV----------DAVLGTALVDMYAKCGRLDMA 350
            VL+ACASLGA  QG  IH +  +N +            D ++  AL+DMY+KC     A
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 351 WKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDRITFACVLSA 406
             +F+D+ ++E  V TW  MIGG A +G ++DA++LF +M  E   + P+  T +C+L A
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           CAH   I  G Q   Y+ + +  +        C++D+  + G +  A  V  SM  + +A
Sbjct: 533 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSA 591

Query: 466 AVWEALLGACRKHGE 480
             W +++     HG 
Sbjct: 592 ISWTSMMTGYGMHGR 606



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 27/286 (9%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            E F S +   TG    +++ +   G  + A  +   +     + W+ +I  + K G   
Sbjct: 89  SEPFISPRSLGTG----VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 144

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+ V   M R   +P  F L  VL AC  L +   G   H  +  N    +  +  ALV
Sbjct: 145 SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 204

Query: 339 DMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKM------Q 389
            MY++CG L+ A  +F+++  +   +V +WN+++        A  A++LF KM      +
Sbjct: 205 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 264

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLL 443
               R D I+   +L AC         L+A+   ++++      G  P+V     ++D  
Sbjct: 265 PTNERSDIISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAY 317

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            + G +  A +V + M  + +   W A++    + G  E    L K
Sbjct: 318 AKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFK 362


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 350/641 (54%), Gaps = 81/641 (12%)

Query: 30  SQKTILDILNTKCHTSWQ--HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           ++ T+L++L   C    Q   LK+ H    + G  +D  V+   V  +A  + S+ + A 
Sbjct: 400 NEVTVLNVL-PACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYA--KCSSLDCAE 456

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF  +    V  WN+++ A  ++  P + + L+  M+     P++FT  ++  AC+  +
Sbjct: 457 RVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLK 516

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             + G ++H  +++N                               G + D     +L+ 
Sbjct: 517 FLRCGKEIHGFMLRN-------------------------------GLELDEFIGISLMS 545

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y++C                     ++M+ G          + +F++M +K  + W+ +
Sbjct: 546 LYIQC---------------------SSMLLG----------KLIFDKMENKSLVCWNVM 574

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I G++++    EAL+ F +M    IKP++  ++ VL AC+ + AL  G  +H    +  +
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             DA +  AL+DMYAKCG ++ +  +F+ +  K+   WN +I G  +HG    AIELF  
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFEL 694

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           MQ +  RPD  TF  VL AC HAG++  GL+ L  MQ +YG+ P++EHY C+VD+LGRAG
Sbjct: 695 MQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAG 754

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------- 499
            L EA ++++ MP EP++ +W +LL +CR +G++E GE + K LLE+EP           
Sbjct: 755 QLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSN 814

Query: 500 ------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 + D+V K+R+ MKE G+  + G S I++ G+++ F   DGS  + K+I     K
Sbjct: 815 LYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIK 874

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           + +K+   GY P++S VL +++EE K    K HSEKLAI+FG +NT  G T+RV KNLR+
Sbjct: 875 LEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRI 934

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH+A KL+SKV KRDIIVRD  R+HHF+NG C+C DFW
Sbjct: 935 CVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 219/479 (45%), Gaps = 63/479 (13%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           + +S+ S++ I  +L    H    H+ ++ HA++  S   ++  V  T +    ++  S 
Sbjct: 85  VSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSP 144

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMV-GVDSKPNKFTYPTVF 140
            + +  VF++  + ++F++N++L      N  +R  ISL+ E++   D  P+ FT P V 
Sbjct: 145 SD-SRGVFDAAKEKDLFLYNALLSG-YSRNALFRDAISLFLELLSATDLAPDNFTLPCVA 202

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           KAC+     + G  VHA  +K G   D  V ++ I MY   G V  A ++ +     +++
Sbjct: 203 KACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLV 262

Query: 201 CWNALI------DGYLKC--------------------------------GDIEGAKEL- 221
            WN+++       G+ +C                                G++     + 
Sbjct: 263 SWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVH 322

Query: 222 ---FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
              FK    +     N+++  +++ G   EAR LF+    K+ ++W+ II GY+K+G ++
Sbjct: 323 GLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFR 382

Query: 279 EALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
              E+  EMQR+ K++  +  +  VL AC+    L     IH +  R+    D ++  A 
Sbjct: 383 GVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAF 442

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           V  YAKC  LD A +VF  M+ K V +WNA+IG  A +G    +++LF  M    M PDR
Sbjct: 443 VAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDR 502

Query: 398 ITFACVLSACA-----------HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            T   +L ACA           H  M+  GL+    + +  GI     +  C   LLG+
Sbjct: 503 FTIGSLLLACARLKFLRCGKEIHGFMLRNGLE----LDEFIGISLMSLYIQCSSMLLGK 557



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKP 294
           +I+ ++  G   ++R +F+   +KD   ++A++ GY+++  +++A+ +F E+     + P
Sbjct: 134 IIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAP 193

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
             F L CV  ACA +  ++ G  +H    +     DA +G AL+ MY KCG ++ A KVF
Sbjct: 194 DNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVF 253

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHAG 411
           E M+ + + +WN+++   + +G   +   +F ++   + E + PD  T   V+ ACA  G
Sbjct: 254 ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVG 313

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            +  G+  +  +    GI  EV     +VD+  + GYL EA  +   M    N   W  +
Sbjct: 314 EVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF-DMNGGKNVVSWNTI 371

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNR-RCDDVAKMRKL 510
           +    K G+      + ++L EM+ + + R ++V  +  L
Sbjct: 372 IWGYSKEGDF---RGVFELLQEMQREEKVRVNEVTVLNVL 408


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/433 (45%), Positives = 273/433 (63%), Gaps = 14/433 (3%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           M++GFAR G+    +KLF+EM ++D I+W+ ++  Y  +G   EALE F  M+   + P 
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +  L  +L+A A L  L+ G  IH  +   S+ +   +GTAL+DMYAKCG ++ +  +FE
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +M  ++V TWN MI GLA HG   DA+ LF +   E + P  +TF  VL+AC+ AG++  
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G      M   YGI+PE+EHYGC+VDLLGRAG + EA +VI SM + P+  +W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 476 RKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPG 521
           R HG  E GE++G  L+E++P               +R+ +DV ++R+LM ER      G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S+I+  G +H F  G   H Q  EI  ML+ I  +L   GY PN S VL DI EEEKE 
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
           A K HSE+LAIAFG + T PG+ IR++KNLRVC DCH  TK+IS+VF+R+IIVRD  R+H
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 642 HFRNGKCSCNDFW 654
           HF+ GKCSC D+W
Sbjct: 421 HFKEGKCSCLDYW 433



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 12/247 (4%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           +R     +  K+F+ + + +V  WN++L A + + +    +  +  M      P++ T  
Sbjct: 6   ARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLV 65

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T+  A +     + G  +H+ +    L   + + ++ + MYA  GC+ ++R + ++  + 
Sbjct: 66  TMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRR 125

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF----ARFGRFEEARKLF 253
           DV  WN +I G    G  + A  LF+   ++     N    G     +R G  +E R  F
Sbjct: 126 DVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYF 185

Query: 254 NEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
             M D   I      +  ++D   + G   EA++V   M    I P   + + VL AC  
Sbjct: 186 QMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESM---AISPDPVLWAMVLCACRI 242

Query: 309 LGALDQG 315
            G  + G
Sbjct: 243 HGLAELG 249



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 43/244 (17%)

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK--------- 228
           +A  G V+  +++ D+  + DVI WN ++  Y+  G +  A E FK  ++          
Sbjct: 5   FARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATL 64

Query: 229 ------------------------------NTGSYNAMISGFARFGRFEEARKLFNEMND 258
                                               A++  +A+ G  E++R LF  M  
Sbjct: 65  VTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPR 124

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +D  TW+ +I G    G  K+AL +F     + + P       VL AC+  G + +G   
Sbjct: 125 RDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRH- 183

Query: 319 HDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           +  +  +S  ++  +     +VD+  + G +  A KV E M +  +   W  ++    +H
Sbjct: 184 YFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIH 243

Query: 376 GRAD 379
           G A+
Sbjct: 244 GLAE 247


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/715 (32%), Positives = 353/715 (49%), Gaps = 115/715 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACL 109
           H +I  +G   + ++   LV  +  SR  + E A  +F+ + +    +V  WNS++ A +
Sbjct: 178 HGLICCNGFESNVFICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 235

Query: 110 EHNEPWRVISLYSEM-VGVDSKPNK-----FTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + +  W  + L+S+M + V  KP        +   +  AC   +A  +  +VH + ++NG
Sbjct: 236 KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 295

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILD------------------------------- 192
              DV V ++ I  YA  G +  A ++ +                               
Sbjct: 296 TFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFK 355

Query: 193 ----DGSKSDVICWNALIDGYLKCGDIEGAKELFKS------------------------ 224
               +    DV+ W A+I GY + G    A  LF+                         
Sbjct: 356 NMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 415

Query: 225 ------------------TKDKNTGS-------YNAMISGFARFGRFEEARKLFNE--MN 257
                             T D + G        YNA+I  +++   F+ AR +F++  + 
Sbjct: 416 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 475

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQG 315
           +++ +TW+ +I G+ + G   +AL++F EM  +   + P  + +SC+L ACA L A+  G
Sbjct: 476 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 535

Query: 316 IWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
             IH +V R+     +   +   L+DMY+KCG +D A  VF+ M  K   +W +M+ G  
Sbjct: 536 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 595

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  +A+++F KM++    PD ITF  VL AC+H GM+D+GL     M   YG+ P  
Sbjct: 596 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 655

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C +DLL R+G L +A   +  MPMEP A VW ALL ACR H  VE  E     L+E
Sbjct: 656 EHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 715

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M  +N               R  DVA++R LMK+ GIK  PG S +        F  GD 
Sbjct: 716 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 775

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY +L+ +I+++K  GY P ++  L D+DEEEK      HSEKLA+A+G + T
Sbjct: 776 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 835

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR+ KNLRVC DCHSA   ISK+   +I+VRD  R+HHF+NG CSC  +W
Sbjct: 836 SPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 220/494 (44%), Gaps = 99/494 (20%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           + AL V   V       WN ++R  ++       I++   M+   ++P+ FT P V KAC
Sbjct: 106 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 165

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK---SDVI 200
               + + G   H  +  NG   +V + ++ + MY+  G + +A  I D+ ++    DVI
Sbjct: 166 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225

Query: 201 CWNALIDGYLKCGDIEGAKELF---------KSTKDKN---------------------- 229
            WN+++  ++K  +   A +LF         K T +++                      
Sbjct: 226 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 285

Query: 230 --------TGSY------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                    G++      NA+I  +A+ G  E A K+FN M  KD ++W+A++ GY++ G
Sbjct: 286 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 276 YYKEALEVFNEMQRDKIK-----------------------------------PRKFVLS 300
            ++ A E+F  M+++ I                                    P    + 
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICV----------DAVLGTALVDMYAKCGRLDMA 350
            VL+ACASLGA  QG  IH +  +N +            D ++  AL+DMY+KC     A
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 351 WKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDRITFACVLSA 406
             +F+D+ ++E  V TW  MIGG A +G ++DA++LF +M  E   + P+  T +C+L A
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           CAH   I  G Q   Y+ + +  +        C++D+  + G +  A  V  SM  + +A
Sbjct: 526 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS-QKSA 584

Query: 466 AVWEALLGACRKHG 479
             W +++     HG
Sbjct: 585 ISWTSMMTGYGMHG 598



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 27/286 (9%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            E F S +   TG    +++ +   G  + A  +   +     + W+ +I  + K G   
Sbjct: 82  SEPFISPRSLGTG----VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 137

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+ V   M R   +P  F L  VL AC  L +   G   H  +  N    +  +  ALV
Sbjct: 138 SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 197

Query: 339 DMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKM------Q 389
            MY++CG L+ A  +F+++  +   +V +WN+++        A  A++LF KM      +
Sbjct: 198 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 257

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLL 443
               R D I+   +L AC         L+A+   ++++      G  P+V     ++D  
Sbjct: 258 PTNERSDIISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAY 310

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            + G +  A +V + M  + +   W A++    + G  E    L K
Sbjct: 311 AKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFK 355


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 356/715 (49%), Gaps = 115/715 (16%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACL 109
           H +I  +G   + ++   LV  +  SR  + E A  +F+ + +    +V  WNS++ A +
Sbjct: 33  HGLICCNGFESNVFICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV 90

Query: 110 EHNEPWRVISLYSEM-VGVDSKPNK-----FTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           + +  W  + L+S+M + V  KP        +   +  AC   +A  +  +VH + ++NG
Sbjct: 91  KSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG 150

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              DV V ++ I  YA  G +  A ++ +     DV+ WNA++ GY + G+ + A ELFK
Sbjct: 151 TFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFK 210

Query: 224 STKDKNTG----SYNAMISGFARFGRFEEARKLFNEM----------------------- 256
           + + +N      ++ A+I+G+++ G   EA  +F +M                       
Sbjct: 211 NMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLG 270

Query: 257 --------------------------NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
                                      D+D + ++A+ID Y+K   +K A  +F+++  +
Sbjct: 271 AFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 330

Query: 291 K-----------------------------------IKPRKFVLSCVLAACASLGALDQG 315
           +                                   + P  + +SC+L ACA L A+  G
Sbjct: 331 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 390

Query: 316 IWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
             IH +V R+     +   +   L++MY+KCG +D A  VF+ M  K   +W +M+ G  
Sbjct: 391 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 450

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  +A+++F KM++    PD ITF  VL AC+H GM+D+GL     M   YG+ P  
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY   +DLL R G L +A + +  MPMEP A VW ALL ACR H  VE  E     L+E
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 570

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M  +N               R  DVA++R LMK+ GIK  PG S +        F  GD 
Sbjct: 571 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 630

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY +L+ +I+++K  GY P ++  L D+DEEEK      HSEKLA+A+G + T
Sbjct: 631 SHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTT 690

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR+ KNLRVC DCHSA   ISK+   +I+VRD  R+HHF+NG CSC  +W
Sbjct: 691 FPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 99/454 (21%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+   ++ + FT P V KAC    + + G   H  +  NG   +V + ++ + MY+  G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 184 VNKARQILDDGSK---SDVICWNALIDGYLKCGDIEGAKELF---------KSTKDKN-- 229
           + +A  I D+ ++    DVI WN+++  ++K  +   A +LF         K T +++  
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 230 ----------------------------TGSY------NAMISGFARFGRFEEARKLFNE 255
                                        G++      NA+I  +A+ G  E A K+FN 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK---------------------- 293
           M  KD ++W+A++ GY++ G +K A E+F  M+++ I                       
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 294 -------------PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV----------D 330
                        P    +  VL+ACASLGA  QG+ IH +  +N +            D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKM 388
            ++  AL+DMY+KC     A  +F+D+ ++E  V TW  MIGG A +G ++DA++LF +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 389 QREK--MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGR 445
             E   + P+  T +C+L ACAH   I  G Q   Y+ + +  D        C++++  +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            G +  A  V  SM  + +A  W +++     HG
Sbjct: 421 CGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHG 453



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 27/220 (12%)

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M R   +   F L  VL AC  L +   G   H  +  N    +  +  ALV MY++CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 347 LDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKM------QREKMRPDR 397
           L+ A  +F+++  +   +V +WN+++        A  A++LF KM      +    R D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYG--------IDPEVEHYGCIVDLLGRAGYL 449
           I+   +L AC         L+A+   ++++G        +D  V +   ++D   + G +
Sbjct: 121 ISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLM 171

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             A +V + M  + +   W A++    + G  +    L K
Sbjct: 172 ENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFK 210


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/658 (33%), Positives = 348/658 (52%), Gaps = 56/658 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K+ H  + K G    + V  +L+  +  S     + A K+F+ +   +V  WNS++  C+
Sbjct: 573  KRIHGCVYKLGFGSYNTVVNSLIATYFKS--GEVDSAHKLFDELGDRDVVSWNSMISGCV 630

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
             +      +  + +M+ +    +  T      AC+   +   G  +H   VK     +V 
Sbjct: 631  MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVM 690

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
              ++ + MY+  G +N A Q  +   +  V+ W +LI  Y++ G  + A  LF   + K 
Sbjct: 691  FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750

Query: 230  TGS---------------------------------------YNAMISGFARFGRFEEAR 250
                                                       NA++  +A+ G  EEA 
Sbjct: 751  VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810

Query: 251  KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             +F+++  KD ++W+ +I GY+K+    EAL++F EMQ++  +P    ++C+L AC SL 
Sbjct: 811  LVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLA 869

Query: 311  ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            AL+ G  IH  + RN    +  +  AL+DMY KCG L  A  +F+ +  K++ TW  MI 
Sbjct: 870  ALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMIS 929

Query: 371  GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
            G  MHG  ++AI  F KM+   ++PD ITF  +L AC+H+G+++ G      M     ++
Sbjct: 930  GCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNME 989

Query: 431  PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
            P++EHY C+VDLL R G L++A  +I +MP++P+A +W ALL  CR H +VE  E++ + 
Sbjct: 990  PKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEH 1049

Query: 491  LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
            + E+EP N               + ++V K+R+ + +RG+K +PG S I+V G    F +
Sbjct: 1050 VFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVS 1109

Query: 537  GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
             D +HPQ K I+ +L  +  K+K EG+SP     L +  + EKE A   HSEKLA+AFG 
Sbjct: 1110 ADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGI 1169

Query: 597  INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +N   G TIRV KNLRVC+DCH   K +SK  +R+II+RD  R+HHF++G CSC DFW
Sbjct: 1170 LNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 221/479 (46%), Gaps = 49/479 (10%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN-VFVW 101
           H   Q  K  H+VI  +G   +  +   LV  + +          ++F+ +   N VF+W
Sbjct: 464 HKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSC--GALREGRRIFDHILSDNKVFLW 521

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           N ++    +  +    I L+ +M  +    N +T+  + K  +      E  ++H  V K
Sbjct: 522 NLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYK 581

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G      V +S I  Y   G V+ A ++ D+    DV+ WN++I G +  G    A E 
Sbjct: 582 LGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEF 641

Query: 222 F-----------------KSTKDKNTGSY----------------------NAMISGFAR 242
           F                       N GS                       N ++  +++
Sbjct: 642 FVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSK 701

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G   +A + F +M  K  ++W+++I  Y ++G Y +A+ +F EM+   + P  + ++ V
Sbjct: 702 CGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSV 761

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L ACA   +LD+G  +H+++++N++ +   +  AL+DMYAKCG ++ A+ VF  + +K++
Sbjct: 762 LHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDI 821

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH--AGMIDRGLQAL 420
            +WN MIGG + +   ++A++LF +MQ+E  RPD IT AC+L AC    A  I RG+   
Sbjct: 822 VSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGC 880

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                  G   E+     ++D+  + G L  A  +   +P E +   W  ++  C  HG
Sbjct: 881 ILRN---GYSSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMHG 935



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 190/405 (46%), Gaps = 45/405 (11%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD- 193
            Y ++ + C+  +  +EG  VH+ +  NG+  +  + +  + MY   G + + R+I D  
Sbjct: 453 AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHI 512

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS------TKDKNT----------------- 230
            S + V  WN ++  Y K GD   +  LFK       T +  T                 
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572

Query: 231 ------------GSY----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
                       GSY    N++I+ + + G  + A KLF+E+ D+D ++W+++I G   +
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G+   ALE F +M   ++      L   +AACA++G+L  G  +H    +     + +  
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFN 692

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             L+DMY+KCG L+ A + FE M  K V +W ++I      G  DDAI LF++M+ + + 
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVS 752

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD  +   VL ACA    +D+G     Y+++   +   +     ++D+  + G + EA  
Sbjct: 753 PDVYSMTSVLHACACGNSLDKGRDVHNYIRK-NNMALCLPVSNALMDMYAKCGSMEEAYL 811

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           V S +P++ +   W  ++G   K+          K+  EM+ ++R
Sbjct: 812 VFSQIPVK-DIVSWNTMIGGYSKN---SLPNEALKLFAEMQKESR 852



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 168/367 (45%), Gaps = 32/367 (8%)

Query: 240 FARFGRFEEARKLFNE-MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           +   G   E R++F+  ++D     W+ ++  Y K G Y+E++ +F +MQ+  I    + 
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            SC+L   A+LG + +   IH  V +        +  +L+  Y K G +D A K+F+++ 
Sbjct: 556 FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            ++V +WN+MI G  M+G +  A+E F +M   ++  D  T    ++ACA+ G +  G +
Sbjct: 616 DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG-R 674

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
           AL           EV     ++D+  + G L +A +    M  +     W +L+ A  + 
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVVSWTSLIAAYVRE 733

Query: 479 GEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMK--------ERG------IKTNPGSSM 524
           G  +   RL     EME +     DV  M  ++         ++G      I+ N  +  
Sbjct: 734 GLYDDAIRL---FYEMESKGVS-PDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALC 789

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK------LKMEGYSPNS--SQVLFDIDE 576
           + V+  + +     GS   ++E YL+  +I  K        + GYS NS  ++ L    E
Sbjct: 790 LPVSNALMDMYAKCGS---MEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 577 EEKETAP 583
            +KE+ P
Sbjct: 847 MQKESRP 853


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 332/621 (53%), Gaps = 85/621 (13%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H  I+KS    D     TL+     +   +   A  VF+ +  P+   +N+++R+   
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRS--- 62

Query: 111 HNE--PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           H+   P   +S +  M       + FT+P V KACS  + +   + +H+ +VK GL    
Sbjct: 63  HSRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRLQIN---LHLHSLIVKYGL---- 115

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
                                       SD+   NALI  Y  CG +E            
Sbjct: 116 ---------------------------GSDIFVQNALICVYGYCGSLE------------ 136

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                               A K+F+EM+++D ++WS +I  +  +GY  EAL++F +MQ
Sbjct: 137 -------------------MAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177

Query: 289 -RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
             DK+ P +  +  V++A + LG L+ G W+   + R    V   LGTAL+DM+++CG +
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSI 237

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           D +  VFE M ++ V TW A+I GL +HGR+ +A+ +F  M++  ++PD +TF+ VL AC
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H G++  G      ++++YG+DP ++HYGC+VD+LGRAG L EA + +  MPM+PN+ +
Sbjct: 298 SHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSII 357

Query: 468 WEALLGACRKHGEVEFGERL-GKILLEMEPQN-------------RRCDDVAKMRKLMKE 513
           W  LLGAC  H  +   E++  KI      QN              R  + A +R  M+E
Sbjct: 358 WRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMRE 417

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           + I   PG S I+V+  IHEF +GD SHPQ ++I   L  II  L+  GY   +  VL D
Sbjct: 418 KRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHD 477

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           I+EEE+E +  YHSEKLA+AF  ++     TIR++KNLR+C DCHS  K IS  F+R II
Sbjct: 478 IEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKII 537

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           +RDR R+HHF  G CSC+D+W
Sbjct: 538 IRDRNRFHHFEKGLCSCHDYW 558


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/673 (34%), Positives = 354/673 (52%), Gaps = 55/673 (8%)

Query: 37  ILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           +LNT   T S +H  Q H  I+ + +    ++   L+  +A     N  L L      H 
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
             +  W S++      N   + +SL+++M      PN+FT+ ++  A + T     G Q+
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           H+ + K+G   ++ V ++ + MYA    ++ A ++ D   + +++ WN++I G+      
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 216 EGAKELFK-----STKDKNTGSYNAMIS-----GFARFGR-------------------- 245
           + A  +FK      T   N  S ++++S     G   FGR                    
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNS 387

Query: 246 ----------FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
                     F+E  KLF  + D+D +TW+ ++ G+ ++  ++EA   F  M+R+ I P 
Sbjct: 388 LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPD 447

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +   S VL + ASL AL QG  IHD + +     +  +  +L+ MYAKCG L  A++VFE
Sbjct: 448 EASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFE 507

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++   V +W AMI    +HG A+  IELF  M  E + P  +TF CVLSAC+H G ++ 
Sbjct: 508 GIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEE 567

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           GL     M++++ ++P  EHY C+VDLLGRAG+L EA+  I SMPM+P  +VW ALLGAC
Sbjct: 568 GLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGAC 627

Query: 476 RKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPG 521
           RK+G ++ G    + L EMEP N               R ++  ++R+LM   G++  PG
Sbjct: 628 RKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPG 687

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S IDV  +   F   D SH    EIY ML+K+ + +K +GY   +  V   ++E E+E 
Sbjct: 688 CSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQ 747

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSEKLA+AFG +     + IR+ KNLR C  CH+  KL SK+F R+IIVRD  R+H
Sbjct: 748 GLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFH 807

Query: 642 HFRNGKCSCNDFW 654
            F +G CSC D+W
Sbjct: 808 RFADGFCSCGDYW 820


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 307/561 (54%), Gaps = 56/561 (9%)

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
           +EG ++H+ +   G       ++  + MYA  GC+++AR I +   +  V+ W+A+I  Y
Sbjct: 2   EEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAY 61

Query: 210 L---------------------------------KCG---DIEGAKELFK------STKD 227
                                              CG   D+E  +E+          K 
Sbjct: 62  ALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKS 121

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            N    NA+++ + R G  EEARK+F+ M+  D  +W+++I   T++    EALE+F+ M
Sbjct: 122 SNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRM 181

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
             + I P    L+ VL ACA  GAL  G  IH  +  +      +  TAL+DMYAKCG L
Sbjct: 182 NLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSL 241

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           + + KVF  M+ +   +W AMI  LA HG+ D+A+ELF +M  E M  D  TF CVL AC
Sbjct: 242 ECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRAC 301

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +HAG+I   L+    M + Y I P   HY   +D +GRAG L +AEE+I SMP  P    
Sbjct: 302 SHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLT 361

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W+ LL ACR H + E   ++ ++L ++ P++               R  D  ++RK M +
Sbjct: 362 WKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTD 421

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
           RG+K  PG S I+V   +HEF  GD +HP   EI L L+K+  +++  GY PN+  VL  
Sbjct: 422 RGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHA 481

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           ++EEEKE     HSEKLAIAFG I T PG  + ++KNLRVC DCH+ATK+I+K+ +R I+
Sbjct: 482 VNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIV 541

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRD  R+HHF +G+CSC D+W
Sbjct: 542 VRDTHRFHHFEDGQCSCKDYW 562



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 160/391 (40%), Gaps = 94/391 (24%)

Query: 50  KQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           ++ HA+ + SG  +  +  +   L+  +   R  + E A KVF+++  P+ F W S++ A
Sbjct: 107 REIHALAMASGELKSSNAILENALLNMYV--RCGSLEEARKVFDTMDHPDAFSWTSMITA 164

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           C E+ E    + L+  M      P   T  +V  AC+ + A K G Q+H+ +  +G    
Sbjct: 165 CTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGF--- 221

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                                        S V+   AL+D Y KCG +E + ++F + + 
Sbjct: 222 ----------------------------HSSVLAQTALLDMYAKCGSLECSSKVFTAMET 253

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEV 283
           +N+ S+ AMI+  A+ G+ +EA +LF EMN +    D  T+  ++   +  G  KE+LE 
Sbjct: 254 RNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEF 313

Query: 284 FNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           F+ M  D  I P +                        H  R             +D   
Sbjct: 314 FHSMVEDYAIAPTE-----------------------THYCRA------------LDTIG 338

Query: 343 KCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAI---ELFFKMQREKMRPDRI 398
           + GRL  A ++   M    E  TW  ++    +H +A+ A    EL  K+  E    D +
Sbjct: 339 RAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPE----DSM 394

Query: 399 TFACVLSACA-----------HAGMIDRGLQ 418
            +  + +  A             GM DRGL+
Sbjct: 395 AYTLLGNVYAATGRYGDQMRVRKGMTDRGLK 425



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 7/174 (4%)

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           +++G  IH  +         +    LV MYAKCG LD A  +F  +  + V +W+AMIG 
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 372 LAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRG--LQALTYMQ-QMY 427
            A+HGR  +A+ LF +M+ + ++ P+ +TF  V +AC     +++G  + AL     ++ 
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
             +  +E+   ++++  R G L EA +V  +M   P+A  W +++ AC ++ E+
Sbjct: 121 SSNAILEN--ALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMITACTENCEL 171


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 324/590 (54%), Gaps = 49/590 (8%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFK 141
            +LAL +F ++ + ++  WN+++    ++      +  +S M+   S +P++FT  +V  
Sbjct: 245 MDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLS 304

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+     K G Q+H+++++ G+                      + QI+          
Sbjct: 305 ACANLRMLKMGKQMHSYILRTGM--------------------PYSSQIM---------- 334

Query: 202 WNALIDGYLKCGDIEGAKELFKS--TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            NALI  Y K G +E A+ +       D N  S+ A++ G+ + G  ++AR++F+ MN++
Sbjct: 335 -NALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR 393

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D I W+A+I GY ++G   EA+E+F  M R   +P    L+ VL+ACASL  L  G  IH
Sbjct: 394 DVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIH 453

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRA 378
               R+       +  A++ +YA+ G + +A +VF+ +   KE  TW +MI  LA HG  
Sbjct: 454 CRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLG 513

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           + AI LF +M R  ++PDR+T+  V SAC HAG ID+G +    M   +GI PE+ HY C
Sbjct: 514 EQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYAC 573

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLL RAG L EA E I  MP+ P+  VW +LL ACR     +  E   + LL ++P N
Sbjct: 574 MVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDN 633

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R +D A++ KL K++ +K   G S   V   +H F   D  HPQ 
Sbjct: 634 SGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQR 693

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
             I     ++ E++K  G+ P+ + VL D+D+E KE     HSEKLAIAFG I+T    T
Sbjct: 694 DAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT 753

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R++KNLRVC DCH+A K ISKV  R+IIVRD  R+HHFR+G CSC D+W
Sbjct: 754 LRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 220/505 (43%), Gaps = 56/505 (11%)

Query: 34  ILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN--FELALKVFN 91
           +L +  T  + S      AHAV  K+G     Y+   L+  +A +      F  A ++F+
Sbjct: 31  LLQLSQTAVNPSAGRAIHAHAV--KAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFD 88

Query: 92  SV--HKPNVFVWNSVLRACLEHNEP-------------------------------WRVI 118
            +   + N F WNS+L    +                                   W  +
Sbjct: 89  DIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAV 148

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
             + +MVG    P++F    V  +C+ TEA   G +VH+ V+K GL   V V +S + MY
Sbjct: 149 KTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMY 208

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
              G    AR + +         WNA++  Y   G ++ A  +F++ ++++  S+NA+I+
Sbjct: 209 GKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIA 268

Query: 239 GFARFGRFEEARKLFNEM-----NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           G+ + G  + A K F+ M      + DE T ++++         K   ++ + + R  + 
Sbjct: 269 GYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 328

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
               +++ +++  A  G+++    I D  K     ++ +  TAL++ Y K G    A +V
Sbjct: 329 YSSQIMNALISTYAKSGSVETARRIMD--KAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++V  W AMI G   +G+ D+A+ELF  M R    P+  T A VLSACA    +
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYL 446

Query: 414 DRGLQ----ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
             G Q    A+  +Q+       V     I+ +  R+G +  A  V   +        W 
Sbjct: 447 GYGKQIHCRAIRSLQEQ-----SVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWT 501

Query: 470 ALLGACRKHGEVEFGERLGKILLEM 494
           +++ A  +HG    GE+   +  EM
Sbjct: 502 SMIVALAQHG---LGEQAIVLFEEM 523


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/625 (34%), Positives = 333/625 (53%), Gaps = 83/625 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLV--KCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           + L+QAHA ++ +G  +   +   L+   C A S         ++F SV  P+ F++NS+
Sbjct: 24  RRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGS----IAYTRRLFRSVSDPDSFLFNSL 79

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           ++A  +       +  Y  M+     P+ +T+ +V KA                      
Sbjct: 80  IKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKA---------------------- 117

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           C D+                              ++C   L+  ++           F S
Sbjct: 118 CADL-----------------------------SLLCIGTLVHSHV-----------FVS 137

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
               ++    A+I+ +A+      ARK+F+EM  +  + W+++I GY ++G   EA+EVF
Sbjct: 138 GYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVF 197

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           N+M+  +++P       VL+AC+ LG+LD G W+HD +  + I ++ VL T+LV+M+++C
Sbjct: 198 NKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRC 257

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +  A  VF  M    V  W AMI G  MHG   +A+E+F +M+   + P+ +TF  VL
Sbjct: 258 GDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVL 317

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM-EP 463
           SACAHAG+ID G      M+Q YG+ P VEH+ C+VD+ GR G L EA + +  +   E 
Sbjct: 318 SACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDEL 377

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRK 509
             AVW A+LGAC+ H   + G  + + L+  EP+N               R D V  +R 
Sbjct: 378 VPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRN 437

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           +M +RG+K   G S IDV+   + F  GD SHP+  EIY  L ++I + K  GY+P    
Sbjct: 438 VMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPES 497

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
            + +++ EE+E A +YHSEKLA+AFG + T  G T+R++KNLR+CEDCHSA K IS V  
Sbjct: 498 AMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMN 557

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+IIVRD++R+HHFR G CSC+D+W
Sbjct: 558 REIIVRDKLRFHHFREGSCSCSDYW 582


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/643 (35%), Positives = 364/643 (56%), Gaps = 71/643 (11%)

Query: 44  TSWQHLKQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSV---HKPNV 98
           T+ +  +Q HA  + +G     +H++   L+  + +    +   A K+F+ +   HK +V
Sbjct: 34  TALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSH--ARKLFDEIPQSHKDSV 91

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEAD-KEGVQVH 156
             + +++R C     P+  + L+ +M   D   +         AC+ +   D K G Q+H
Sbjct: 92  -DYTALIRHC----PPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGDTKVGSQMH 146

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
             VVK G                                K D +C NAL++ Y+K G + 
Sbjct: 147 VGVVKFGFV------------------------------KFDKVC-NALMNVYVKFGLVG 175

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A+++F+  + ++  S++  + G  ++   E  R LF+EM +++E+ W+ +I GY  +G+
Sbjct: 176 EARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGF 235

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSC-VLAACASLGALDQGIWIHDH-VKRNSICVDAVLG 334
            KEA  +  EM         FV  C VL+AC+  G +  G W+H + VK   +    ++G
Sbjct: 236 TKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVG 295

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           T+LVDMYAKCGR++ A  VF  M  + V  WNAM+GGLAMHG    A+++F  M  E+++
Sbjct: 296 TSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMV-EEVK 354

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD +TF  +LSAC+H+G++++G      ++ +Y I PE+EHY C+V LLGRAG L EAE 
Sbjct: 355 PDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEI 414

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           ++ +M + PN  V  +L+G+C  HG ++ GE++ + LLEM+P N               +
Sbjct: 415 MVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGK 474

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +    +R+++K+RGIK  PG S I V+G +H+F  GD SH +  EIY+ L ++I +L+ 
Sbjct: 475 VEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRS 534

Query: 561 EGYSPNSS-QVLF------DIDE--EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
            GY PN+S QVLF      D  E  EE E     HSEKLA+ FG ++T  G+ + + KNL
Sbjct: 535 AGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNL 594

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C+DCHSA K+ SKV+KR+I+VRDR R+H F++G CSC+D+W
Sbjct: 595 RICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/583 (36%), Positives = 313/583 (53%), Gaps = 77/583 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A+ VF+ +    V  W S++ A          I L+ EM      P+ FT  TV  AC+ 
Sbjct: 52  AILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACAC 111

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             + + G  VH +                               I ++  +S++   NAL
Sbjct: 112 NGSLENGKDVHNY-------------------------------IRENDMQSNIFVCNAL 140

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           +D Y KCG +                               E+A  +F EM  KD I+W+
Sbjct: 141 MDMYAKCGSM-------------------------------EDANSVFLEMPVKDIISWN 169

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I GY+K+    EAL +F +M  + +KP    L+C+L ACASL +LD+G  +H H+ RN
Sbjct: 170 TMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRN 228

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
               D  +  ALVDMY KCG   +A  +F+ +  K++ TW  MI G  MHG  ++AI  F
Sbjct: 229 GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTF 288

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M++  + PD ++F  +L AC+H+G++D G +    MQ    + P++EHY CIVDLL R
Sbjct: 289 NEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLAR 348

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------- 498
           +G LA A + I SMP+EP+A +W ALL  CR H +V+  E++ + + E+EP+N       
Sbjct: 349 SGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLL 408

Query: 499 -------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   + ++V K+R+ +  RG+K NPG S I+V   +H F  G+ SHPQ K+I ++L
Sbjct: 409 ANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLL 468

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           K++  K+K EGY P +   L + D  +KETA   HSEKLA+AFG +N  P  TIRV KNL
Sbjct: 469 KRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNL 528

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVC DCH   K ISK   R+I++RD  R+HHF++G C C  FW
Sbjct: 529 RVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 159/306 (51%), Gaps = 10/306 (3%)

Query: 204 ALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           +++     CGD+   + +     K+     T   N ++  +A+ G  + A  +F+ M+ +
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
             +TW+++I  Y ++G   EA+ +F+EM R+ + P  F ++ VL ACA  G+L+ G  +H
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           ++++ N +  +  +  AL+DMYAKCG ++ A  VF +M +K++ +WN MIGG + +   +
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A+ LF  M  E M+PD  T AC+L ACA    +DRG +   ++ +  G   + +    +
Sbjct: 183 EALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILR-NGFFSDQQVANAL 240

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           VD+  + G    A  +   +P + +   W  ++     HG   FG        EM     
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHG---FGNNAITTFNEMRQAGI 296

Query: 500 RCDDVA 505
             D+V+
Sbjct: 297 EPDEVS 302



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 152/369 (41%), Gaps = 79/369 (21%)

Query: 33  TILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           TI  +L+   C+ S ++ K  H  I ++    + +V   L+  +A  +  + E A  VF 
Sbjct: 101 TITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYA--KCGSMEDANSVFL 158

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +   ++  WN+++    +++ P   +SL+ +MV ++ KP+  T   +  AC+   +   
Sbjct: 159 EMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDR 217

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G +VH H+++NG   D  V ++ + MY   G    AR + D     D+I W  +I GY  
Sbjct: 218 GKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY-- 275

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN----DKDEITWSAI 267
                                      G   FG    A   FNEM     + DE+++ +I
Sbjct: 276 ---------------------------GMHGFG--NNAITTFNEMRQAGIEPDEVSFISI 306

Query: 268 IDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +   +  G   E    FN MQ +  +KP+    +C+                        
Sbjct: 307 LYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACI------------------------ 342

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH---GRADDAI 382
                      VD+ A+ G+L MA+K  + M ++ +   W A++ G  +H     A+   
Sbjct: 343 -----------VDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVA 391

Query: 383 ELFFKMQRE 391
           E  F+++ E
Sbjct: 392 EHVFELEPE 400



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 19/214 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  IL++G F D  V+  LV  +         LA  +F+ +   ++  W  ++    
Sbjct: 219 KEVHGHILRNGFFSDQQVANALVDMYVKCGVP--VLARLLFDMIPTKDLITWTVMIAGYG 276

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      I+ ++EM     +P++ ++ ++  ACS +    EG +       N +  + +
Sbjct: 277 MHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFF-----NVMQDECN 331

Query: 170 VKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKEL 221
           VK   ++ YAC        G +  A + +     + D   W AL+ G     D++ A+++
Sbjct: 332 VKPK-LEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKV 390

Query: 222 FKST---KDKNTGSYNAMISGFARFGRFEEARKL 252
            +     + +NTG Y  + + +A   ++EE +KL
Sbjct: 391 AEHVFELEPENTGYYVLLANTYAEAEKWEEVKKL 424


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 325/598 (54%), Gaps = 91/598 (15%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHN-EPWRVISLYSEMVGVDSK---PNKFTYPTV 139
           ++  ++  ++H PN F WN ++++  +      + I LY  ++        P+K TYP V
Sbjct: 32  QIHAQILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFV 91

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            KA                      C  +     G Q++A          +L  G + D 
Sbjct: 92  LKA----------------------CAYLFSLFEGKQVHA---------HVLKLGFELDT 120

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND- 258
              N+LI  Y  CG                                 E ARK+F+ M + 
Sbjct: 121 YICNSLIHFYASCG-------------------------------YLETARKVFDRMCEW 149

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           ++ ++W+ +ID Y K G Y   L +F EM +   +P  + +  V+ AC  LG+L  G+W+
Sbjct: 150 RNVVSWNVMIDSYAKVGDYDIVLIMFCEMMK-VYEPDCYTMQSVIRACGGLGSLSLGMWV 208

Query: 319 HDHV----KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           H  V     +N +C D ++ T LVDMY KCG L++A +VFE M  ++V +WN++I G A+
Sbjct: 209 HAFVLKKCDKNVVC-DVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAV 267

Query: 375 HGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           HG+A  A++ F +M + EK+ P+ ITF  VLSAC H+GM+D GL     M + Y ++P +
Sbjct: 268 HGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSL 327

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC-RKHGEVEFGERLGKILL 492
            HYGC+VDL  RAG++ EA  V+S MP++P+A +W +LL AC ++H  VE  E + K + 
Sbjct: 328 VHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIF 387

Query: 493 E---------------MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           E               +     R +DV  +RKLM ++G+   PG S+I++NG  HEF  G
Sbjct: 388 ESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAG 447

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPN-SSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           D +HPQ K+IY  + +I EKL+  GY P+ S   L D   E K+   + HSE+LAIAFG 
Sbjct: 448 DTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGL 507

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +N+ P   IRV KNLRVC DCH  TKLIS+++  +IIVRDRVR+HHF++G CSC D+W
Sbjct: 508 LNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 140/323 (43%), Gaps = 64/323 (19%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK-PNVFVWNSVLRAC 108
           KQ HA +LK G   D Y+  +L+  +A+  +   E A KVF+ + +  NV  WN ++ + 
Sbjct: 105 KQVHAHVLKLGFELDTYICNSLIHFYASCGY--LETARKVFDRMCEWRNVVSWNVMIDSY 162

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +  +   V+ ++ EM+ V  +P+ +T  +V +AC    +   G+ VHA V+K       
Sbjct: 163 AKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKK------ 215

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
                                  D     DV+    L+D Y KCG +E AK++F+    +
Sbjct: 216 ----------------------CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYR 253

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +  S+N++I GFA  G+ + A   F  M                              ++
Sbjct: 254 DVSSWNSIILGFAVHGKAKAALDYFVRM------------------------------VK 283

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
            +KI P       VL+AC   G +D+G+ +     K  ++    V    LVD+YA+ G +
Sbjct: 284 VEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHI 343

Query: 348 DMAWKVFEDMKMK-EVFTWNAMI 369
             A  V  +M +K +   W +++
Sbjct: 344 QEALNVVSEMPIKPDAVIWRSLL 366



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 10/187 (5%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVF 140
           + E+A +VF  +   +V  WNS++     H +    +  +  MV V+   PN  T+  V 
Sbjct: 239 SLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVL 298

Query: 141 KACSITEADKEGVQVHAHVVK--NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-KS 197
            AC+ +    EG+     + K  N     VH     + +YA  G + +A  ++ +   K 
Sbjct: 299 SACNHSGMVDEGLMYFEMMTKEYNVEPSLVHY-GCLVDLYARAGHIQEALNVVSEMPIKP 357

Query: 198 DVICWNALIDG-YLKCGDIE----GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           D + W +L+D  Y +   +E     AK++F+S      G+Y  +   +A   R+ +   L
Sbjct: 358 DAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLL 417

Query: 253 FNEMNDK 259
              MNDK
Sbjct: 418 RKLMNDK 424


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 325/596 (54%), Gaps = 49/596 (8%)

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFT 135
           ++     +LAL +F ++    +  WN+V+    ++    + +  +S M+   +  P++FT
Sbjct: 238 DAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFT 297

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V  AC+       G QVHA+++++ +                 G V           
Sbjct: 298 ITSVLSACANLGMVSIGKQVHAYILRSRM--------------PYIGQVT---------- 333

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLF 253
                  NALI  Y K G +E A+ + +     D N  S+ A++ G+ + G  + AR++F
Sbjct: 334 -------NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMF 386

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + M+++D + W+A+I GY ++G+  EA+E+F  M R   +P  + ++ VL+ CASL  L+
Sbjct: 387 DVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLE 446

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGL 372
            G  IH    R+     + +  ++V MYA+ G L  A +VF+ +   KE  TW +MI  L
Sbjct: 447 YGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVAL 506

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A HG  +DA+ LF +M R  ++PDRITF  VLSAC H G +D G +    +Q  +GI PE
Sbjct: 507 AQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPE 566

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           + HY C+VDLL RAG  +EA+E I  MP+EP+A  W +LL ACR H   +  E   + LL
Sbjct: 567 MSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLL 626

Query: 493 EMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGD 538
            ++P N               R +D AK+ K  K++ +K   G S   +   +H F   D
Sbjct: 627 SIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADD 686

Query: 539 GSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
             HPQ   +Y    K+ + +K  G+ P+   VL D+D+E KE     HSEKLAIAFG ++
Sbjct: 687 VLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVS 746

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T    T+R++KNLRVC DCH+A K ISKV  R+II+RD  R+HHF++G CSC D+W
Sbjct: 747 TPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 212/516 (41%), Gaps = 113/516 (21%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSN---FELALKVFNSV--HKPNVFVWNSVLR- 106
           HA  +K+G     Y+   L+  +A         F  A ++F+ +   + NVF WNS+L  
Sbjct: 46  HARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNSLLSL 105

Query: 107 --------------ACLEHNEP--WRV--------------ISLYSEMVGVDSKPNKFTY 136
                         A +   +P  W V              I ++ +MV     P +FT 
Sbjct: 106 YAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTL 165

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
             V  +C+ TEA   G +VH+ VVK GL   V V +S + MY   G    AR + +   +
Sbjct: 166 TNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPE 225

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
             V  WNA++      G ++ A  LF++  D+   S+NA+I+                  
Sbjct: 226 RSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIA------------------ 267

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQG 315
                        GY ++G   +AL  F+ M     + P +F ++ VL+ACA+LG +  G
Sbjct: 268 -------------GYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG 314

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRL---------------------------- 347
             +H ++ R+ +     +  AL+ MYAK G +                            
Sbjct: 315 KQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYV 374

Query: 348 ---DM--AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
              DM  A ++F+ M  ++V  W AMI G   +G  D+A+ELF  M R    P+  T A 
Sbjct: 375 KLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAA 434

Query: 403 VLSACAHAGMIDRGLQ----ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           VLS CA    ++ G Q    A+  +Q+       V +   IV +  R+G L  A  V   
Sbjct: 435 VLSVCASLACLEYGKQIHCKAIRSLQEQ---SSSVSN--SIVTMYARSGSLPWARRVFDR 489

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           +        W +++ A  +HG    GE    +  EM
Sbjct: 490 VHWRKETVTWTSMIVALAQHG---LGEDAVGLFEEM 522



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 180/436 (41%), Gaps = 91/436 (20%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC-----VNKARQILDD 193
           + + C        G  +HA  VK GL    ++ ++ +  YA           +AR++ D+
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 194 --GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
              ++ +V  WN+L+  Y K G +  A+ +F    +++  S+  M+ G  R GRF EA K
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F +M          + DG                     + P +F L+ VL++CA+  A
Sbjct: 149 MFLDM----------VTDG---------------------LSPTQFTLTNVLSSCAATEA 177

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC--------------------------- 344
              G  +H  V +  +     +  ++++MY KC                           
Sbjct: 178 RGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSL 237

Query: 345 ----GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-QREKMRPDRIT 399
               GR+D+A  +FE+M  + + +WNA+I G   +G    A+  F +M     M PD  T
Sbjct: 238 DAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFT 297

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG----CIVDLLGRAGYLAEAEEV 455
              VLSACA+ GM+  G Q   Y+     +   + + G     ++ +  ++G +  A  V
Sbjct: 298 ITSVLSACANLGMVSIGKQVHAYI-----LRSRMPYIGQVTNALISMYAKSGSVENARGV 352

Query: 456 ISSMPM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEME-----------PQNRRCDD 503
           +    M + N   + ALL    K G+++    +  ++   +            QN   D+
Sbjct: 353 MQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDE 412

Query: 504 VAKMRKLMKERGIKTN 519
             ++ +LM   G + N
Sbjct: 413 AMELFRLMIRSGPEPN 428


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 352/657 (53%), Gaps = 86/657 (13%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA I K GH  + +V   L+   A S     ++A +VF+ +   ++  W  ++  C   N
Sbjct: 162 HACIFKLGHESNAFVGTALID--AYSVCGRVDVAREVFDGILYKDMVSWTGMV-TCFAEN 218

Query: 113 EPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
           + ++  + L+S+M  V  KPN FT+ +VFKAC   EA   G  VH   +K+    D++V 
Sbjct: 219 DCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG 278

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK--- 228
            + + +Y   G ++ AR   ++  K DVI W+ +I  Y +    + A E+F   +     
Sbjct: 279 VALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVL 338

Query: 229 -------------------NTGSY-----------------NAMISGFARFGRFEEARKL 252
                              N G+                  NA++  +A+ GR E +  L
Sbjct: 339 PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXL 398

Query: 253 FNEMNDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           F E   ++++T W+ +I G+ + G  ++AL +F  M   +++  +   S  L ACASL A
Sbjct: 399 FAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 458

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L+ G+ IH    + +   D V+  AL+DMYAKCG +  A  VF+ M  ++  +WNAMI G
Sbjct: 459 LEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISG 518

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            +MHG A                            CA+AG++D+G    T M Q +GI+P
Sbjct: 519 YSMHGLA----------------------------CANAGLLDQGQAYFTSMIQDHGIEP 550

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +EHY C+V LLGR G+L +A ++I  +P +P+  VW ALLGAC  H ++E G    + +
Sbjct: 551 CIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHV 610

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           LEMEPQ++              R D+VA +RK MK +G+K  PG S I+  G +H F  G
Sbjct: 611 LEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVG 670

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D SHP+V+ I  ML+ +  K K  GY PN + VL D+++EEKE     HSE+LA++FG I
Sbjct: 671 DTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGII 730

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            T  G+ IR++KNLR+C DCH+A K ISKV +R+I+VRD  R+HHF+ G CSC D+W
Sbjct: 731 RTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 204/470 (43%), Gaps = 44/470 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  ILK G   D +    L+  +  S F     A K+F+ + + N   + ++++   
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E       I L+  +     + N F + T+ K     +  + G  +HA + K G   +  
Sbjct: 116 ESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAF 175

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ I  Y+  G V+ AR++ D     D++ W  ++  + +    + A +LF   +   
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 230 TGSYN---------------------------------------AMISGFARFGRFEEAR 250
               N                                       A++  + + G  ++AR
Sbjct: 236 FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             F E+  KD I WS +I  Y +    KEA+E+F +M++  + P +F  + VL ACA++ 
Sbjct: 296 XAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATME 355

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF-EDMKMKEVFTWNAMI 369
            L+ G  IH HV +  +  D  +  AL+D+YAKCGR++ +  +F E     +V  WN +I
Sbjct: 356 GLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G    G  + A+ LF  M   +++   +T++  L ACA    ++ GLQ +  +      
Sbjct: 416 VGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTF 474

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           D ++     ++D+  + G + +A  V   M  +   + W A++     HG
Sbjct: 475 DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVS-WNAMISGYSMHG 523



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKF---VLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           +++ G+  ++ ++  E     + P +F     +  L  C       +G  +H  + +   
Sbjct: 11  FSRRGFSVQSAKLTQEFV-GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGG 69

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
           C+D      L++MY K   L  A K+F++M  +   ++  +I G A   R  +AIELF +
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 388 MQREKMRPDRITFACVL 404
           + RE    +   F  +L
Sbjct: 130 LHREGHELNPFVFTTIL 146


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/448 (42%), Positives = 288/448 (64%), Gaps = 15/448 (3%)

Query: 205 LIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
           LID Y KCGDI  A+ +F +  + +    +N +I G+ + G  + AR LF++M  +D IT
Sbjct: 276 LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVIT 335

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++++I GY   G  ++AL++F +++R  ++   F +  +L ACASLGAL QG  +H  ++
Sbjct: 336 FNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIE 395

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +  +  D  L TALVDMY KCGR+D A  VF  M  ++V TW+AMI GLA +G   DA+E
Sbjct: 396 QRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALE 455

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
            F +M+R+  +P  +T+  VL+AC+H+ +++ G Q    M+ ++ + P++EHYGC++DLL
Sbjct: 456 SFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLL 515

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ------ 497
            R+G L EA  ++ +MPM+PNA +W ++L ACR H  ++      + LL++ P+      
Sbjct: 516 ARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYV 575

Query: 498 --------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                   +R+  +  ++R LM+E+G+K   G S I V G +H+F   D SHP   EI  
Sbjct: 576 QLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIIT 635

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
           M+++I  +LK  GYSP +S++  D+DEEEKE A   HSEK+AIAFG I+  P   I ++K
Sbjct: 636 MMEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMK 695

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDR 637
           NLRVCEDCHSA KLIS+++ R+IIVRDR
Sbjct: 696 NLRVCEDCHSAIKLISQLWNREIIVRDR 723



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 208/475 (43%), Gaps = 77/475 (16%)

Query: 45  SWQHLKQAHAVILKSGHF----QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           S +   Q HA++  SG         ++  +L  C +  R   + L+L  F+ +  P  F+
Sbjct: 11  SVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSL--FDRLPHPTTFL 68

Query: 101 WNSVLRACLEH----NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
            ++ LRACL+     + P  ++          S    FT+  VF+ C+            
Sbjct: 69  HDTALRACLQASAGADHPVLILRRMRRGGVRMSA---FTFHFVFRCCAAGAG-------- 117

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
                 GLC  +H         AC       R +L   ++   I  N LI  Y   G  +
Sbjct: 118 -----AGLCRMLHA--------ACL------RTMLPSAAR---IVANPLIHMYASLGLTD 155

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            A+  F     K+   +  +I G  R+G  +EAR+L  +  +++ ++W+++I GY++ G 
Sbjct: 156 DARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGR 215

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             +A+  FN M  D ++P +  +   L+AC+ L  L+ G  +H  V +  I +   L   
Sbjct: 216 PADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVT 275

Query: 337 LVDMYAKC--------------------------------GRLDMAWKVFEDMKMKEVFT 364
           L+DMYAKC                                G +D+A  +F+ M  ++V T
Sbjct: 276 LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVIT 335

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           +N+MI G    GR  DA++LF +++R  MR D  T   +L+ACA  G + +G +AL    
Sbjct: 336 FNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQG-RALHASI 394

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +   ++ +V     +VD+  + G + EA  V   M  E +   W A++     +G
Sbjct: 395 EQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERDVHTWSAMIAGLAFNG 448



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 107/237 (45%), Gaps = 12/237 (5%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +  + ++A  +F+ +   +V  +NS++   +        + L+ ++     + + FT  +
Sbjct: 314 KLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVS 373

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +  AC+   A  +G  +HA + +  +  DV++ ++ + MY   G V++A  +     + D
Sbjct: 374 LLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERD 433

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  W+A+I G    G    A E F   K       + +Y A+++  +      E R+ FN
Sbjct: 434 VHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFN 493

Query: 255 EMNDKDEI-----TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EM    ++      +  +ID   + G   EA+ +   M    ++P   + + +L+AC
Sbjct: 494 EMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWASILSAC 547


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/630 (35%), Positives = 344/630 (54%), Gaps = 41/630 (6%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR--A 107
            KQ H  + + G   D  +   L+  +  S+    ELA +VF+S+   N   WNS++   A
Sbjct: 795  KQIHGYVFRFGLDSDVSLCNPLISMY--SKNGKLELARRVFDSMENRNTSSWNSMISSYA 852

Query: 108  CLEH-NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             L   N+ W   SL+ E+   D KP+  T+  +     +    +E + +   +   G   
Sbjct: 853  ALGFLNDAW---SLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKP 909

Query: 167  DVHVKSSGIQMYACFGCVNKARQ----ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
            +    +S +Q  +  G +N  ++    +L +G   DV    +LID Y+K   +  A+ +F
Sbjct: 910  NSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVF 969

Query: 223  KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYK 278
             + K++N  ++N+++SG++  G FE+A +L N+M  +    D +TW+ +I GY   G  +
Sbjct: 970  DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCAR 1029

Query: 279  EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            +A             P    ++C+L ACASL  L +G  IH    RN    D  + TAL+
Sbjct: 1030 KAF-----------MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALI 1078

Query: 339  DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            DMY+K   L  A KVF  ++ K + +WN MI G A+ G   +AI +F +MQ+  + PD I
Sbjct: 1079 DMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAI 1138

Query: 399  TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            TF  +LSAC ++G+I  G +    M   Y I P +EHY C+VDLLGRAGYL EA ++I +
Sbjct: 1139 TFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHT 1198

Query: 459  MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDV 504
            MP++P+A +W ALLG+CR H  + F E   K L ++EP N               R +D+
Sbjct: 1199 MPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDM 1258

Query: 505  AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
              +R+LM   G++     S I +N  +H F + +  HP   +IY  L +++ ++K  GY 
Sbjct: 1259 DHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYV 1318

Query: 565  PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
            P+ + V  ++DE EK+     H+EKLAI +G I    G  IRVIKN R+C DCHSA K I
Sbjct: 1319 PDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYI 1378

Query: 625  SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            S V  R++ +RD VR+HHFR GKCSCNDFW
Sbjct: 1379 SLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 203/491 (41%), Gaps = 86/491 (17%)

Query: 51   QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            + H  ++K G   D Y+   L+  +   R    E A +VF+ +  P   +WN  +   L+
Sbjct: 695  EIHGCLIKRGFDLDVYLRCALMNFYG--RCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 752

Query: 111  HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
              +  + + L+ +M     K    T   V +AC    A     Q+H +V + GL  DV +
Sbjct: 753  SEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSL 812

Query: 171  KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
             +  I MY+  G +  AR++ D     +   WN++I  Y   G +  A  LF   +  + 
Sbjct: 813  CNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDM 872

Query: 231  GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
                                         D +TW+ ++ G+   GY +E L +   MQ +
Sbjct: 873  ---------------------------KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 905

Query: 291  KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
              KP    ++ VL A + LG L+ G   H +V RN    D  +GT+L+DMY K   L  A
Sbjct: 906  GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSA 965

Query: 351  WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF---------- 400
              VF++MK + +F WN+++ G +  G  +DA+ L  +M++E ++PD +T+          
Sbjct: 966  QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 1025

Query: 401  --------------ACVLSACAHAGMIDRGLQ---------------ALTYMQQMYGIDP 431
                           C+L ACA   ++ +G +                 T +  MY    
Sbjct: 1026 GCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSS 1085

Query: 432  EVEH---------------YGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEALLG 473
             +++               + C++      G   EA  V + M    + P+A  + ALL 
Sbjct: 1086 SLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLS 1145

Query: 474  ACRKHGEVEFG 484
            AC+  G +  G
Sbjct: 1146 ACKNSGLIGEG 1156



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 188/464 (40%), Gaps = 61/464 (13%)

Query: 190 ILDDGSKSDVICWNALIDGY---LKCGDIEGAKELFKSTKDKNT-GSYNAMISGFARFGR 245
           ++D  S++     +A +D +     CG + GA  + K  +  N   +   +IS +  FG 
Sbjct: 564 VVDSPSRASTGAISAGVDVFRFNTTCGML-GALVMIKLPQKWNPDAAAKNLISSYLGFGD 622

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGY-TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
           F  A  +F     ++ + W++ ++ + +  G     LEVF E+    +     V S  L 
Sbjct: 623 FWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALK 682

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
            C  +  +  G+ IH  + +    +D  L  AL++ Y +C  L+ A +VF +M   E   
Sbjct: 683 TCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALL 742

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           WN  I       +    +ELF KMQ   ++ +  T   VL AC   G ++   Q   Y+ 
Sbjct: 743 WNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVF 802

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           + +G+D +V     ++ +  + G L  A  V  SM    N + W +++ +   +  + F 
Sbjct: 803 R-FGLDSDVSLCNPLISMYSKNGKLELARRVFDSME-NRNTSSWNSMISS---YAALGFL 857

Query: 485 ERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                +  E+E  + + D                     ++  N ++    +G   H   
Sbjct: 858 NDAWSLFYELESSDMKPD---------------------IVTWNCLL----SGHFLHGYK 892

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSS---QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
           +E+      I+++++ EG+ PNSS    VL  I E                  GF+N   
Sbjct: 893 EEVL----NILQRMQGEGFKPNSSSMTSVLQAISE-----------------LGFLNMGK 931

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
                V++N   C D +  T LI    K   +   +  + + +N
Sbjct: 932 ETHGYVLRNGFDC-DVYVGTSLIDMYVKNHSLXSAQAVFDNMKN 974


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/697 (33%), Positives = 363/697 (52%), Gaps = 77/697 (11%)

Query: 28   EFSQKTILDILNTKCHTSWQHL------------KQAHAVILKSGHFQDHYVSGTLVKCH 75
            E  +K  LD L   C T    L            KQ H+  +K+G   D  + G L+  +
Sbjct: 358  ELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLY 417

Query: 76   ANSRFSNFELALKVFNSVHKPNVFVWNSVLRA--CLEH-NEPWRVISLYSEMVGVDSKPN 132
               + S+ + A + F S    NV +WN +L A   L++ NE +++ +   +M G++  PN
Sbjct: 418  V--KCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFT-QMQMEGIE--PN 472

Query: 133  KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
            +FTYP++ + CS   A   G Q+H  V+K G   +V+V S  I MYA  G ++ A +I  
Sbjct: 473  QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 193  DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----------------------NT 230
               + DV+ W A+I GY +      A  LFK  +D+                      N 
Sbjct: 533  RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 231  GSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
            G                   NA++S +AR G+  +A   F+++  KD I+W+++I G+ +
Sbjct: 593  GQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQ 652

Query: 274  DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
             G+ +EAL +F++M +   +   F     ++A A++  +  G  IH  + +     +  +
Sbjct: 653  SGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEV 712

Query: 334  GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
               L+ +YAKCG +D A + F +M  K   +WNAM+ G + HG    A+ LF  M++  +
Sbjct: 713  SNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGV 772

Query: 394  RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
             P+ +TF  VLSAC+H G++D G++    M++++G+ P+ EHY C+VDLLGR+G L+ A 
Sbjct: 773  LPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRAR 832

Query: 454  EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR------------- 500
              +  MP++P+A V   LL AC  H  ++ GE     LLE+EP++               
Sbjct: 833  RFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTG 892

Query: 501  ---CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
               C D  + R++MK+RG+K  PG S I+VN  +H F  GD  HP V +IY  L+ + E 
Sbjct: 893  KWGCRD--RTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNEL 950

Query: 558  LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
                GY P ++ +L D +  +K      HSEKLAIAFG ++      I V KNLRVC DC
Sbjct: 951  AAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDC 1010

Query: 618  HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            H+  K +SK+  R I+VRD  R+HHF+ G CSC D+W
Sbjct: 1011 HNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 245/555 (44%), Gaps = 57/555 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ILK G   +  +   L+  +    F + + A+ VF+ +    +  WN VL   +   
Sbjct: 91  HGKILKMGFCAEVVLCERLMDLYI--AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGK 148

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ-VHAHVVKNGLCGDVHVK 171
              RV+ L+  M+    KP++ TY  V + C   +     V+ +HA  + +G    + V 
Sbjct: 149 MAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVC 208

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--------- 222
           +  I +Y   G +N A+++ D   K D + W A++ G  + G  E A  LF         
Sbjct: 209 NPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVY 268

Query: 223 ------------------------------KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                                         K      T   NA+++ ++R G F  A ++
Sbjct: 269 PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQV 328

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           FN M  +DE++++++I G ++ GY  +ALE+F +M  D +KP    ++ +L+AC+S+GAL
Sbjct: 329 FNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL 388

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
             G   H +  +  +  D +L  AL+D+Y KC  +  A + F   + + V  WN M+   
Sbjct: 389 LVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY 448

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
            +    +++ ++F +MQ E + P++ T+  +L  C+    +D G Q  T + +  G    
Sbjct: 449 GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFN 507

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
           V     ++D+  + G L  A ++   +  E +   W A++    +H   +F E L  +  
Sbjct: 508 VYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHE--KFAEAL-NLFK 563

Query: 493 EMEPQNRRCDDVAKMRKLMKERGIKT-NPGSSM---IDVNGVIHEFRTGDGSHP------ 542
           EM+ Q    D++     +    GI+  N G  +     V+G   +   G+          
Sbjct: 564 EMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCG 623

Query: 543 QVKEIYLMLKKIIEK 557
           +V++ Y    KI  K
Sbjct: 624 KVRDAYFAFDKIFSK 638



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 213/479 (44%), Gaps = 55/479 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +++ HA  +  G+    +V   L+  +  + F N   A KVF+ + K +   W ++L   
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGFLN--SAKKVFDGLQKRDSVSWVAMLSGL 246

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +       + L+ +M      P  + + +V  AC+  E  K G Q+H  V+K G   + 
Sbjct: 247 SQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLET 306

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--- 225
           +V ++ + +Y+  G    A Q+ +   + D + +N+LI G  + G  + A ELFK     
Sbjct: 307 YVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLD 366

Query: 226 -----------------------KDKNTGSY-------------NAMISGFARFGRFEEA 249
                                    K   SY              A++  + +    + A
Sbjct: 367 CLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTA 426

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            + F     ++ + W+ ++  Y       E+ ++F +MQ + I+P +F    +L  C+SL
Sbjct: 427 HEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL 486

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            A+D G  IH  V +     +  + + L+DMYAK G+LD A K+F  +K K+V +W AMI
Sbjct: 487 RAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMI 546

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY-- 427
            G A H +  +A+ LF +MQ + +  D I FA  +SACA       G+QAL   QQ++  
Sbjct: 547 AGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA-------GIQALNQGQQIHAQ 599

Query: 428 ----GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
               G   ++     +V L  R G + +A      +  + N + W +L+    + G  E
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS-WNSLISGFAQSGHCE 657



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 176/385 (45%), Gaps = 42/385 (10%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           + N  TY  +   C  +    +G ++H  ++K G C +V +    + +Y  FG ++ A  
Sbjct: 65  RANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVT 124

Query: 190 ILDDGSKSDVICWNALIDGYLK---CGDIEGA-KELFKSTKDKNTGSY------------ 233
           + D+     + CWN ++  ++     G + G  + + +     +  +Y            
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 234 ------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                                   N +I  + + G    A+K+F+ +  +D ++W A++ 
Sbjct: 185 PFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G ++ G  +EA+ +F +M    + P  ++ S VL+AC  +     G  +H  V +    +
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL 304

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           +  +  ALV +Y++ G    A +VF  M  ++  ++N++I GL+  G +D A+ELF KM 
Sbjct: 305 ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMC 364

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            + ++PD +T A +LSAC+  G +  G Q  +Y  +  G+  ++   G ++DL  +   +
Sbjct: 365 LDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA-GMSSDIILEGALLDLYVKCSDI 423

Query: 450 AEAEEVISSMPMEPNAAVWEALLGA 474
             A E   S   E N  +W  +L A
Sbjct: 424 KTAHEFFLSTETE-NVVLWNVMLVA 447



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 16/261 (6%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           K  FKS  +K    +  ++S F  F +F E                +A+   Y+ D    
Sbjct: 6   KTYFKSIVNK-IKQFRPVVSIFFFFQKFLEHN--------------TALSYAYSNDEGEA 50

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
             +   + M+   ++        +L  C S G    G  +H  + +   C + VL   L+
Sbjct: 51  NGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLM 110

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D+Y   G LD A  VF++M ++ +  WN ++        A   + LF +M +EK++PD  
Sbjct: 111 DLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDER 170

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T+A VL  C    +    ++ +      +G +  +     ++DL  + G+L  A++V   
Sbjct: 171 TYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDG 230

Query: 459 MPMEPNAAVWEALLGACRKHG 479
           +  + ++  W A+L    + G
Sbjct: 231 L-QKRDSVSWVAMLSGLSQSG 250


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/643 (33%), Positives = 348/643 (54%), Gaps = 56/643 (8%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL------------------ 105
           D ++   L+  H  ++F     A  +F+ + K + F WN++L                  
Sbjct: 57  DSFLHNQLL--HLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDR 114

Query: 106 ---RACLEHNE----------PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
              R  + +N           P   + L+  M     +P ++T  ++  A +     + G
Sbjct: 115 MPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYG 174

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            Q+H  ++     G+V + ++   MYA  G + +AR + D  +K +++ WN +I GY K 
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 213 GDIEGAKELFKSTK------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
           G  E    L    +      D+ T S   +I+ + + GR +EAR++F+E  +KD + W+A
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQCGRVDEARRVFSEFKEKDIVCWTA 292

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++ GY K+G  ++AL +FNEM  + I+P  + LS V+++CA L +L  G  +H       
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG 352

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           +  + ++ +AL+DMY+KCG +D A  VF  M  + V +WNAMI G A +G   DA+ELF 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFE 412

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M ++K +PD +TF  +LSAC H   I++G +    +   +G+ P ++HY C+V+LLGR 
Sbjct: 413 NMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRT 472

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP---------- 496
           G + +A  +I +M  +P+  +W  LL  C   G++   E   + L E++P          
Sbjct: 473 GRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLS 532

Query: 497 ----QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                  R  DVA +R LMK + +K   G S I+++  +H F + D +HP+ ++IY  L 
Sbjct: 533 NMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLN 592

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG-ATIRVIKNL 611
            +I KL+ EG++PN++ VL D+ E+EK  +  +HSEKLA+AFG I    G + IR+IKN+
Sbjct: 593 MLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNI 652

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH   K  S++  R II+RD  R+HHF  GKCSCND W
Sbjct: 653 RICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 163/338 (48%), Gaps = 23/338 (6%)

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
           +D    N L+  Y K G +  A+ LF     ++  S+NA++S +A+ G  +  +  F+ M
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +D ++++  I G++ +   +E+LE+F  MQR+  +P ++ +  +L A A L  L  G 
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGK 175

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  +   +   +  +  AL DMYAKCG ++ A  +F+ +  K + +WN MI G A +G
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           + +  I L  +M+     PD++T + +++A    G +D   +  +  ++      ++  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KDIVCW 290

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPM---EPNAAVWEALLGACRK-----HGEVEFGERL- 487
             ++    + G   +A  + + M +   EP++    +++ +C K     HG+   G+ + 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 488 ---------GKILLEMEPQNRRCDDVAKMRKLMKERGI 516
                       L++M  +    DD   +  LM  R +
Sbjct: 351 AGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 145/321 (45%), Gaps = 20/321 (6%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           SGH  D     T++  +        + A +VF+   + ++  W +++    ++      +
Sbjct: 250 SGHMPDQVTMSTIIAAYCQC--GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDAL 307

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            L++EM+    +P+ +T  +V  +C+   +   G  VH   +  GL  ++ V S+ I MY
Sbjct: 308 LLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMY 367

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYN 234
           +  G ++ AR + +     +V+ WNA+I G  + G  + A ELF++   +    +  ++ 
Sbjct: 368 SKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFI 427

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQR 289
            ++S        E+ ++ F+ ++++  +T     ++ +++   + G  ++A+ +   M  
Sbjct: 428 GILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAH 487

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
           D   P   + S +L+ C++ G +        H+      + AV    L +MYA  GR   
Sbjct: 488 D---PDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI-AVPYIMLSNMYASMGRWKD 543

Query: 350 AWKVFEDMKMKEV-----FTW 365
              V   MK K V     F+W
Sbjct: 544 VASVRNLMKSKNVKKFAGFSW 564


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/660 (32%), Positives = 353/660 (53%), Gaps = 56/660 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+Q HA I+ SG   + ++S +L+  +          A ++F+     NV  W  ++   
Sbjct: 40  LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL--LADAKQIFHHTPYKNVVSWTILISGL 97

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +++     I ++ EM+  + KPN  T  +V  A +     +    VH   V+ G  G+V
Sbjct: 98  AKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNV 157

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V+++ + MY+ FGC+  ARQ+ +  S+ +V+ WNA++ GY   G  E A +LF   + K
Sbjct: 158 FVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRK 217

Query: 229 N---------------------------------TGSYN------AMISGFARFGRFEEA 249
                                             TG  N      A++  +      ++A
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
            ++F+EM+ KD   W+ ++ G++   ++  A++ FN+M     +K     L  +L++C+ 
Sbjct: 278 HRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSH 337

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            GAL QG  +H    +     +  +G+A++DMYA CG L+ A + F  M  K+V  WNAM
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G  M+G   DAI+LF +M+   + PD  TF  VL AC+HAGM+  GLQ   +M +   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           + P ++HY C++D+LGRAG L  A   I++MP +P+  V+  LLGACR HG ++ G  + 
Sbjct: 458 VIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + + EMEP +                 + V   R  ++ + +K +PG S I++N  I+ F
Sbjct: 518 QKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTF 577

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             G+  HPQ  +I  +LK +I K+K  GY PN++ +L D+ ++ K+    +HSEK+AIAF
Sbjct: 578 MAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAF 637

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G + T P   IR+ KNLR C+DCH+A+K +SKVF R ++++D  R+H F++G CSC D+W
Sbjct: 638 GLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
            ++ IL++  H+ + Q  ++ HA+ +K+    + +V   ++  +AN    N E A + F 
Sbjct: 327 ALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANC--GNLEDAKRFFY 384

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + +V  WN+++     +      I L+ +M G    P++ T+ +V  ACS      E
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           G+Q+  H+VK       HV  + +Q YAC
Sbjct: 445 GLQIFYHMVKTS-----HVIPN-LQHYAC 467


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/624 (35%), Positives = 345/624 (55%), Gaps = 56/624 (8%)

Query: 50  KQAHAVILKSG-HFQDHYVSGTL---VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           ++ +A I  SG    D  VS  +   +KC+A       ++A ++F+     N+ + N++ 
Sbjct: 256 EKVYAFIRNSGIEVNDLMVSALVDMYMKCNA------IDVAKRLFDEYGASNLDLCNAMA 309

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              +        + +++ M+    +P++ +  +   +CS       G   H +V++NG  
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF- 368

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                           D IC NALID Y+KC   + A  +F   
Sbjct: 369 -----------------------------ESWDNIC-NALIDMYMKCHRQDTAFRIFDRM 398

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            +K   ++N++++G+   G  + A + F  M +K+ ++W+ II G  +   ++EA+EVF 
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458

Query: 286 EMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            MQ ++ +      +  + +AC  LGALD   WI+ ++++N I +D  LGT LVDM+++C
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRC 518

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G  + A  +F  +  ++V  W A IG +AM G A+ AIELF  M  + ++PD + F   L
Sbjct: 519 GDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGAL 578

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+H G++ +G +    M +++G+ PE  HYGC+VDLLGRAG L EA ++I  MPMEPN
Sbjct: 579 TACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPN 638

Query: 465 AAVWEALLGACRKHGEVEFG------------ERLGKILL--EMEPQNRRCDDVAKMRKL 510
             +W +LL ACR  G VE              ER G  +L   +     R +D+AK+R  
Sbjct: 639 DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLS 698

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MKE+G++  PG+S I + G  HEF +GD SHP++  I  ML ++ ++    G+ P+ S V
Sbjct: 699 MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNV 758

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D+DE+EK      HSEKLA+A+G I+++ G TIR++KNLRVC DCHS  K  SKV+ R
Sbjct: 759 LMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNR 818

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +II+RD  R+H+ R GKCSC DFW
Sbjct: 819 EIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 223/534 (41%), Gaps = 90/534 (16%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           M    TTT  P  L   + +    P+S  + KTI              LK  H  + K G
Sbjct: 13  MVLATTTTTKPSLLNQSKCTKAT-PSSLKNCKTI------------DELKMFHRSLTKQG 59

Query: 61  HFQDHYVSGTLV--KCHANSRFSNFELALKVF-NSVHKPNVFVWNSVLRACLEHNEPWRV 117
              D      LV   C   +R S    A +VF NS      F++NS++R           
Sbjct: 60  LDNDVSTITKLVARSCELGTRES-LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEA 118

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           I L+  M+     P+K+T+P    AC+ + A   G+Q+H  +VK G   D+ V++S +  
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGY---------------------------- 209
           YA  G ++ AR++ D+ S+ +V+ W ++I GY                            
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVT 238

Query: 210 --------LKCGDIEGAKELFKSTKDKNTGSYNAMISG----FARFGRFEEARKLFNEMN 257
                    K  D+E  ++++   ++      + M+S     + +    + A++LF+E  
Sbjct: 239 MVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYG 298

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
             +    +A+   Y + G  +EAL VFN M    ++P +  +   +++C+ L  +  G  
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKC-------------------------------GR 346
            H +V RN       +  AL+DMY KC                               G 
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLS 405
           +D AW+ FE M  K + +WN +I GL      ++AIE+F  MQ +E +  D +T   + S
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           AC H G +D       Y+++  GI  +V     +VD+  R G    A  + +S+
Sbjct: 479 ACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 320/579 (55%), Gaps = 83/579 (14%)

Query: 94   HKP-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
            H P + F  N+VLR       P   + L+   + +   P+  TYP + +AC+   A +EG
Sbjct: 767  HGPLDPFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREG 823

Query: 153  VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
              +HA   K                               +G  + V   N+L+  Y  C
Sbjct: 824  ECLHAEAAK-------------------------------NGFVTLVFVQNSLVHLYGAC 852

Query: 213  GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM--NDKDEITWSAIIDG 270
            G                                FE A K+F+EM    ++ ++W+++++ 
Sbjct: 853  G-------------------------------LFESAHKVFDEMPVRGRNLVSWNSMLNS 881

Query: 271  YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            +  +G   E L VF EM      P  F +  VL ACA  GAL  G  +H +V++  +  +
Sbjct: 882  FAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVEN 941

Query: 331  AVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            + +  AL+D+YAKCG ++ A ++FE+M + + V +W ++I GLA +G   +A+ELF  M+
Sbjct: 942  SHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLME 1001

Query: 390  REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            REK+ P  IT   VL AC+H G++D G +    M++ YGI P +EH GC+VDLLGRAG +
Sbjct: 1002 REKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRV 1061

Query: 450  AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------- 499
             EA + I +MP+EPNA VW  LLG+C  H ++E G+   + L+E++P +           
Sbjct: 1062 EEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLY 1121

Query: 500  ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
                   DV  +RK M +  ++ NPG S++++   ++EF  GD SHP+ ++IY ML +I 
Sbjct: 1122 AAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIA 1181

Query: 556  EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            E+L+ EGY P +S VL DI+EEEKETA  YHSE+LAIAF  + + PG  IR+IKNLR+C 
Sbjct: 1182 ERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCG 1241

Query: 616  DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            DCH A  LISKV+ R+IIVRDR R+HHF+ G CSC D+W
Sbjct: 1242 DCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 17/275 (6%)

Query: 53   HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN--SVHKPNVFVWNSVLRACLE 110
            HA   K+G     +V  +LV  H       FE A KVF+   V   N+  WNS+L +   
Sbjct: 827  HAEAAKNGFVTLVFVQNSLV--HLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAA 884

Query: 111  HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
            +  P  V++++ EM+GVD  P+ FT  +V  AC+   A   G +VH +V K GL  + HV
Sbjct: 885  NGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHV 944

Query: 171  KSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
             ++ I +YA  G VN AR+I ++ G    V+ W +LI G    G  + A ELF   + + 
Sbjct: 945  SNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREK 1004

Query: 230  TGSYNAMISGF----ARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
                   + G     +  G  ++  + F+ M +   I+        ++D   + G  +EA
Sbjct: 1005 LVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEA 1064

Query: 281  LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
             +    M    ++P   V   +L +CA    L+ G
Sbjct: 1065 YDYIITM---PLEPNAVVWRTLLGSCAMHKKLELG 1096


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 350/671 (52%), Gaps = 68/671 (10%)

Query: 50  KQAHAVILKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVL 105
           ++AHA  LK+G    H  +    L+  +A  R      A ++F      + +V  WN+++
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-L 164
              ++       +    +MV +  +P+  T+ +   ACS  E    G ++HA+V+K+  L
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKELF 222
             +  V S+ + MYA    V KARQ+ D    S   +  WNA+I GY + G  E A  LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 223 ----------------------------------------KSTKDKNTGSYNAMISGFAR 242
                                                   K     N    NA++  +AR
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 423

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR---DKIKPRKFVL 299
            G+ + AR++F  ++  D ++W+ +I G    G+  +A ++  EMQ+     + P    L
Sbjct: 424 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 483

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L  CA L A  +G  IH +  R+++  D  +G+ALVDMYAKCG L ++  VF+ +  
Sbjct: 484 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           +   TWN +I    MHG   +A  LF +M    + RP+ +TF   L+AC+H+GM+DRGLQ
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRK 477
               M++ +G++P  +   C+VD+LGRAG L EA  +++SM   E   + W  +LGACR 
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 663

Query: 478 HGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
           H  V  GE  G+              +L  +     +    A++R  M+ RG+   PG S
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+V+G IH F  G+ +HP  +E++  ++ +  ++   GY+P++S VL D+D+ +K    
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 783

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           + HSEKLAIAFG +   PGATIRV KNLRVC DCH A K +SK+  R+I++RD  R+HHF
Sbjct: 784 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 843

Query: 644 RNGKCSCNDFW 654
           RNG+CSC D+W
Sbjct: 844 RNGQCSCGDYW 854



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 119/290 (41%), Gaps = 30/290 (10%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           NAL+  Y +CG +  A E+F S  D   +  S+N++IS    F R++ A      M    
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 157

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
               S  +    +   +  A      + R+                A   AL  G+ +H 
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGRE----------------AHAFALKNGL-LHG 200

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK--MKEVFTWNAMIGGLAMHGRA 378
           H +R +         AL+ MYA+ G +  A ++F        +V TWN M+  L   G  
Sbjct: 201 H-QRFAF-------NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 252

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           D+A++  + M    +RPD +TFA  L AC+   ++D G +   Y+ +   +         
Sbjct: 253 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 312

Query: 439 IVDLLGRAGYLAEAEEVISSMP-MEPNAAVWEALLGACRKHGEVEFGERL 487
           +VD+      + +A +V   +P       +W A++    + G  E   RL
Sbjct: 313 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 362


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/535 (38%), Positives = 304/535 (56%), Gaps = 21/535 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+ +TYP   K+C+ T+    G Q+H+   + GL G+V V  S I MYA  G  + A Q+
Sbjct: 120 PDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 179

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST-----KDKNTGSYNAMIS--GFARF 243
            ++    DV+ WNA+I G+   G    A ++F+          + G+  +++   G AR 
Sbjct: 180 FEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARV 239

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
                 + +F+EM  K  I+W+A++  YT +  + EA+E+F  MQ+D I+P    L+ VL
Sbjct: 240 EDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVL 299

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            +C  + AL  G  IH+ +KR  +C   +L  AL+DMYA CG L  A  VF+ M  ++V 
Sbjct: 300 PSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVV 359

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W ++I     HG   +AI+LF KM  + + PD I F  +L+AC+HAG++D G      M
Sbjct: 360 SWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSM 419

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              + I P++EHY C+VDLLGRAG + EA + I  MP++PN  VW ALLGACR H  ++ 
Sbjct: 420 TSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDI 479

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           G      LL + P+                R  DV+ +R +M+ +GIK  PG S  ++  
Sbjct: 480 GLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGD 539

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
            +H F  GD SHPQ K IY  L +++ +++  GY+P     L D++EE+KE     HSEK
Sbjct: 540 RVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEK 599

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
           LAIAF  INT+PG  IR+  NLR C DCH A KLIS +  R+II++D  R H+ +
Sbjct: 600 LAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 335/623 (53%), Gaps = 83/623 (13%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           L Q HA ++ SG+    ++   L+   C A S         ++F  V  P+ F++ S++R
Sbjct: 28  LHQVHAHVIVSGYGCSRFLLTKLLNLACAAGS----ISYTRQIFLIVPNPDSFLFTSLIR 83

Query: 107 ACLE-HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           +  + HN     +  Y+ MV  +  P+ +T+ +V K+C+   A + G  +H HV+ NG  
Sbjct: 84  STSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNG-- 141

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                          FG              SDV    AL+  Y KCG +          
Sbjct: 142 ---------------FG--------------SDVYVQTALMSFYGKCGVLC--------- 163

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                                  ARK+F++M D+  +TW+++I GY ++G+ KEA+ +F+
Sbjct: 164 ----------------------NARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFD 201

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M+   ++P       VL+ACA LGA   G W+H++   N + ++ VLGT+L++MY +CG
Sbjct: 202 RMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCG 261

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A +VF+ MK + V  W AMI G   +G    A+ELF +M+R  + P+ ITF  VLS
Sbjct: 262 NVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLS 321

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG+++ G +    M++ Y + PEVEH+ C+VD+LGRAG L EA   I  +  EP  
Sbjct: 322 ACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAP 381

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
           A+W A+LGAC+ H     G ++ +  L  EP N               R D V  +R  M
Sbjct: 382 AIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNM 441

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
             + +K   G S ID++   + F  GD SH +  EIY  L +++ K +  GY   S  V+
Sbjct: 442 IRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVM 501

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            +++EEE+E A  YHSEKLAIAFG + T  G  IR++KNLR+CEDCHSA K IS +  R+
Sbjct: 502 HELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNRE 561

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD++R+HHF+NG CSC D+W
Sbjct: 562 IIVRDKLRFHHFKNGSCSCLDYW 584



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 145/327 (44%), Gaps = 17/327 (5%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN-SRFSNFELALKVFNSVHKPNVFVWN 102
            + +H +  H  +L +G   D YV   L+  +       N   A KVF+ +   +V  WN
Sbjct: 125 VALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCN---ARKVFDKMRDRSVVTWN 181

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           S++    ++      I L+  M  +  +PN  T+ +V  AC+   A   G  VH + V N
Sbjct: 182 SMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGN 241

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           GL  +V + +S I MY   G V+KAR++ D   + +V+ W A+I GY   G    A ELF
Sbjct: 242 GLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELF 301

Query: 223 KSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA-----IIDGYTK 273
              +      N+ ++ A++S  A  G   E R++F  M ++  +         ++D   +
Sbjct: 302 HEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGR 361

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G   EA     E+  +   P   + + +L AC        G  + +H +  S   +   
Sbjct: 362 AGLLDEAYNFIKEIHEE---PAPAIWTAMLGACKMHKNFGLGAQVAEH-RLASEPGNPAH 417

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMK 360
              L ++YA  GR+D    V ++M  K
Sbjct: 418 YVILSNIYALAGRMDQVEMVRDNMIRK 444


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 337/607 (55%), Gaps = 72/607 (11%)

Query: 10  LPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHY--V 67
           LPH   P ++S              L  L T C  S + LKQ HA I+K+    D    +
Sbjct: 14  LPHDFNPHKLS-------------FLSTLQT-CK-SIKGLKQIHASIIKTMPSPDAQLTI 58

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-CLEHNEPWRVISLYSEMVG 126
           S  L    A S   +   AL +   +  PN+ ++N+++R     +N+    + +Y +M+ 
Sbjct: 59  STRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLS 118

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
               P+ +T P V KAC+ + A +EG +VH   +K GL  DV+V ++ ++MYA    +  
Sbjct: 119 KGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRS 178

Query: 187 ARQILDDGSKSDVICWNALIDGYLK----------------------------------- 211
           AR++ D   + D++ W  +I GY+K                                   
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238

Query: 212 CGDIEGAKELFK-----STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
            GD+   ++L +     S  + +    NA++  + + G    ARK+F EM  K+ ++W++
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I G  + G +KE+L +F +MQR  +KP    L  VL +CA+LG L+ G W+H ++ RN 
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQ 358

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           I  D  +G ALVDMYAKCG +D A  VF+ M  K+V+++ AMI GLAMHG+   A++LF 
Sbjct: 359 IRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFS 418

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           +M +  + PD +TF  VL+AC+H G+++ G +    M  +Y + P++EHYGC+VDLLGRA
Sbjct: 419 EMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRA 478

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------- 498
           G + EAEE I +MP+EP+A V  ALLGAC+ HG+VE GE + K + ++EP+         
Sbjct: 479 GLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMS 538

Query: 499 ------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                  R  D  K+RK MKER ++  PG S I+++GVIHEF+ GD SHP++KEIY +L 
Sbjct: 539 NIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLD 598

Query: 553 KIIEKLK 559
           +I+  LK
Sbjct: 599 EIMSHLK 605


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/660 (33%), Positives = 351/660 (53%), Gaps = 56/660 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+Q HA I+ SG   + ++S +L+  +          A ++F+     NV  W  ++   
Sbjct: 40  LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL--LADAKQIFHHTPCKNVVSWTILISGL 97

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +++     I ++ EM   + KPN  T  +V  A +     +    VH   V+ G  G+V
Sbjct: 98  AKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNV 157

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V+++ + MY+ FGC+  ARQ+ +  S+ +V+ WNA++ GY   G  E A +LF   + K
Sbjct: 158 FVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRK 217

Query: 229 N---------------------------------TGSYN------AMISGFARFGRFEEA 249
                                             TG  N      A++  +      ++A
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
            ++F+EM  KD   W+ ++ G++   ++  A++ FN+M     +K    VL  +L++C+ 
Sbjct: 278 HRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            GAL QG  +H    +     +  +G+A++DMYA CG L+ A + F  M  K+V  WNAM
Sbjct: 338 SGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAM 397

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G  M+G   DAI+LF +M+   + PD  TF  VL AC+HAGM+  GLQ   +M +   
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSH 457

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
             P ++HY C++D+LGRAG L  A   I++MP +P+  V+  LLGACR HG ++ G  + 
Sbjct: 458 DIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEIS 517

Query: 489 KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + + EMEP +                 + V   R  ++ + +K +PG S I++N  I+ F
Sbjct: 518 QKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTF 577

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             G+  HPQ  +I  +LK +I K+K  GY PN++ +L D+ ++ K+    +HSEK+AIAF
Sbjct: 578 MAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAF 637

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G + T PG  IR+ KNLR C DCHSA+K +SKVF R ++++D  R+H F++G CSC D+W
Sbjct: 638 GLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
            ++ IL++  H+ + Q  ++ HA+ +K+    + +V   ++  +AN    N E A + F 
Sbjct: 327 VLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANC--GNLEDAKRFFY 384

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + +V  WN+++     +      I L+ +M G    P++ T+ +V  ACS      E
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           G+Q+  H+VK     D+      +Q YAC
Sbjct: 445 GLQIFYHMVKTS--HDI----PNLQHYAC 467


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/635 (34%), Positives = 341/635 (53%), Gaps = 69/635 (10%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +KQ H  +L+ G  Q  Y+   L++            A +V   V   N F+W +V+R 
Sbjct: 64  QIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRG 123

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK-NGLCG 166
                +    I++Y  M   +  P  FT+  + KAC   +    G Q HA   +  G C 
Sbjct: 124 YAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCF 183

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
                                           V   N +ID Y+KC  I+ A+++F    
Sbjct: 184 --------------------------------VYVGNTMIDMYVKCESIDCARKVFDEMP 211

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +++  S+  +I+ +AR G  E A +LF  +  KD + W+A++ G+ ++   +EALE F+ 
Sbjct: 212 ERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDR 271

Query: 287 MQRDKIKPRKFVLSCVLAACASLGA---LDQGIWI--------HDHVKRNSICVDAVLGT 335
           M++  I+  +  ++  ++ACA LGA    D+ + I         DHV         V+G+
Sbjct: 272 MEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHV---------VIGS 322

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF-FKMQREKMR 394
           AL+DMY+KCG ++ A  VF  M  K VFT+++MI GLA HGRA +A+ LF + + + +++
Sbjct: 323 ALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIK 382

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P+ +TF   L AC+H+G++D+G Q    M Q +G+ P  +HY C+VDLLGR G L EA E
Sbjct: 383 PNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALE 442

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRR 500
           +I +M +EP+  VW ALLGACR H   E  E   + L E+EP                  
Sbjct: 443 LIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGD 502

Query: 501 CDDVAKMRKLMKERGIKTNPGSS-MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
              V ++RKL+KE+G+K  P  S ++D NG +H+F  G+ +HP   +I   L++++E+L 
Sbjct: 503 WGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLT 562

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
           + GY P+ S V +D+ +  K      H+EKLA+AF  + T+  +TI ++KNLR+C DCH 
Sbjct: 563 VLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHK 622

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +L S+V  + II+RD +R+HHFR+G CSC DFW
Sbjct: 623 FMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 350/671 (52%), Gaps = 68/671 (10%)

Query: 50  KQAHAVILKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVL 105
           ++AHA  LK+G    H  +    L+  +A  R      A ++F      + +V  WN+++
Sbjct: 188 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 245

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-L 164
              ++       +    +MV +  +P+  T+ +   ACS  E    G ++HA+V+K+  L
Sbjct: 246 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 305

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKELF 222
             +  V S+ + MYA    V KARQ+ D    S   +  WNA+I GY + G  E A  LF
Sbjct: 306 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 365

Query: 223 ----------------------------------------KSTKDKNTGSYNAMISGFAR 242
                                                   K     N    NA++  +AR
Sbjct: 366 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 425

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR---DKIKPRKFVL 299
            G+ + AR++F  ++  D ++W+ +I G    G+  +A ++  EMQ+     + P    L
Sbjct: 426 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 485

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L  CA L A  +G  IH +  R+++  D  +G+ALVDMYAKCG L ++  VF+ +  
Sbjct: 486 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 545

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           +   TWN +I    MHG   +A  LF +M    + RP+ +TF   L+AC+H+GM+DRGLQ
Sbjct: 546 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 605

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRK 477
               M++ +G++P  +   C+VD+LGRAG L EA  +++SM   E   + W  +LGACR 
Sbjct: 606 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 665

Query: 478 HGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
           H  V  GE  G+              +L  +     +    A++R  M+ RG+   PG S
Sbjct: 666 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 725

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+V+G IH F  G+ +HP  +E++  ++ +  ++   GY+P++S VL D+D+ +K    
Sbjct: 726 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 785

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           + HSEKLAIAFG +   PGATIRV KNLRVC DCH A K +SK+  R+I++RD  R+HHF
Sbjct: 786 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 845

Query: 644 RNGKCSCNDFW 654
           RNG+CSC D+W
Sbjct: 846 RNGQCSCGDYW 856



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 119/290 (41%), Gaps = 30/290 (10%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           NAL+  Y +CG +  A E+F S  D   +  S+N++IS    F R++ A      M    
Sbjct: 100 NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 159

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
               S  +    +   +  A      + R+                A   AL  G+ +H 
Sbjct: 160 HPLTSFTLVSVLRAVSHLPAAAAAVRLGRE----------------AHAFALKNGL-LHG 202

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK--MKEVFTWNAMIGGLAMHGRA 378
           H +R +         AL+ MYA+ G +  A ++F        +V TWN M+  L   G  
Sbjct: 203 H-QRFAF-------NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 254

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           D+A++  + M    +RPD +TFA  L AC+   ++D G +   Y+ +   +         
Sbjct: 255 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 314

Query: 439 IVDLLGRAGYLAEAEEVISSMP-MEPNAAVWEALLGACRKHGEVEFGERL 487
           +VD+      + +A +V   +P       +W A++    + G  E   RL
Sbjct: 315 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 364


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 350/671 (52%), Gaps = 68/671 (10%)

Query: 50  KQAHAVILKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVL 105
           ++AHA  LK+G    H  +    L+  +A  R      A ++F      + +V  WN+++
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-L 164
              ++       +    +MV +  +P+  T+ +   ACS  E    G ++HA+V+K+  L
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKELF 222
             +  V S+ + MYA    V KARQ+ D    S   +  WNA+I GY + G  E A  LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 223 ----------------------------------------KSTKDKNTGSYNAMISGFAR 242
                                                   K     N    NA++  +AR
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 423

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR---DKIKPRKFVL 299
            G+ + AR++F  ++  D ++W+ +I G    G+  +A ++  EMQ+     + P    L
Sbjct: 424 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 483

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L  CA L A  +G  IH +  R+++  D  +G+ALVDMYAKCG L ++  VF+ +  
Sbjct: 484 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           +   TWN +I    MHG   +A  LF +M    + RP+ +TF   L+AC+H+GM+DRGLQ
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRK 477
               M++ +G++P  +   C+VD+LGRAG L EA  +++SM   E   + W  +LGACR 
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 663

Query: 478 HGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
           H  V  GE  G+              +L  +     +    A++R  M+ RG+   PG S
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+V+G IH F  G+ +HP  +E++  ++ +  ++   GY+P++S VL D+D+ +K    
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 783

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           + HSEKLAIAFG +   PGATIRV KNLRVC DCH A K +SK+  R+I++RD  R+HHF
Sbjct: 784 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 843

Query: 644 RNGKCSCNDFW 654
           RNG+CSC D+W
Sbjct: 844 RNGQCSCGDYW 854



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 119/290 (41%), Gaps = 30/290 (10%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDK--NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           NAL+  Y +CG +  A E+F S  D   +  S+N++IS    F R++ A      M    
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 157

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
               S  +    +   +  A      + R+                A   AL  G+ +H 
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGRE----------------AHAFALKNGL-LHG 200

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK--MKEVFTWNAMIGGLAMHGRA 378
           H +R +         AL+ MYA+ G +  A ++F        +V TWN M+  L   G  
Sbjct: 201 H-QRFAF-------NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 252

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           D+A++  + M    +RPD +TFA  L AC+   ++D G +   Y+ +   +         
Sbjct: 253 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 312

Query: 439 IVDLLGRAGYLAEAEEVISSMP-MEPNAAVWEALLGACRKHGEVEFGERL 487
           +VD+      + +A +V   +P       +W A++    + G  E   RL
Sbjct: 313 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 362


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/438 (43%), Positives = 273/438 (62%), Gaps = 18/438 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ--RDK 291
           NA+I+ +   G    + KLF+EM  +D I+WS++I  + K G   EAL +F +MQ     
Sbjct: 132 NALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESD 191

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I P   V+  V++A +SLGAL+ GIW+H  + R  + +   LG+AL+DMY++CG +D + 
Sbjct: 192 ILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSV 251

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           KVF++M  + V TW A+I GLA+HGR  +A+E F+ M    ++PDRI F  VL AC+H G
Sbjct: 252 KVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGG 311

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           +++ G +  + M   YGI+P +EHYGC+VDLLGRAG + EA + +  M + PN+ +W  L
Sbjct: 312 LVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTL 371

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA---------------KMRKLMKERGI 516
           LGAC  H  +   E+  + + E++P +   D V                 +R  M+E  I
Sbjct: 372 LGACVNHNLLVLAEKAKERIKELDPHH-DGDYVLLSNAYGGVGNWVKKEGVRNSMRESKI 430

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
              PG S++ ++ V HEF +GD SHPQ +EI   L  +I+ +K+ GY+P++  VL DI E
Sbjct: 431 VKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQE 490

Query: 577 EEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           EEKE +  YHSEKLA+AF  +      TIRVIKNLR+C DCHS  K +S  F RDI++RD
Sbjct: 491 EEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRD 550

Query: 637 RVRYHHFRNGKCSCNDFW 654
           R R+HHFR G CSC DFW
Sbjct: 551 RSRFHHFRKGSCSCRDFW 568



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 12/234 (5%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL +F+ M R  +    F    +L +      L+    IH  V +     +  +  AL++
Sbjct: 82  ALALFSHMHRTNVPFDHFTFPLILKS----SKLNPHC-IHTLVLKLGFHSNIYVQNALIN 136

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDR 397
            Y   G L  + K+F++M  +++ +W+++I   A  G  D+A+ LF +MQ ++  + PD 
Sbjct: 137 SYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDG 196

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +    V+SA +  G ++ G+    ++ ++ G++  V     ++D+  R G +  + +V  
Sbjct: 197 VVMLSVISAVSSLGALELGIWVHAFISRI-GVNLTVSLGSALIDMYSRCGDIDRSVKVFD 255

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLM 511
            MP   N   W AL+     HG    G    +   +M     + D +A M  L+
Sbjct: 256 EMPHR-NVVTWTALINGLAVHGR---GREALEAFYDMVESGLKPDRIAFMGVLV 305


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 284/449 (63%), Gaps = 18/449 (4%)

Query: 222 FKSTKDKNTGSYNAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           F  T D+     N +I  ++ FG     +AR +F+ M     +TWSA+I GY + G   +
Sbjct: 173 FGFTTDQYVS--NTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSD 230

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+ +F EMQ   ++P +  +  VLAA A LGAL+   W+   V++  I     L  AL+D
Sbjct: 231 AVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALID 290

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
             AKCG LD A  VF+ MK + + +W ++I  LAM GR  +A+ +F +M+   +RPD + 
Sbjct: 291 ALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVA 350

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL+AC+HAGM+D G      M+  YGIDP++EHYGC+VD+ GRAG +  A E +  M
Sbjct: 351 FIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKM 410

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           PM+PN  +W  L+ ACR HG +E GE + + LL   P +              RR  + +
Sbjct: 411 PMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKS 470

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++R+ M +RGIK  PG S+++++G +HEF  GD SHPQ KEIY+M++++  +L+  G+  
Sbjct: 471 EIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHIS 530

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +S+VL D+DEE+KE A ++HSEKLAIAF  + T PG  +RV+KNLRVC DCH+A K IS
Sbjct: 531 ATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCIS 590

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            V+ R+IIVRDR R+H F+NG CSCNDFW
Sbjct: 591 LVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 50/330 (15%)

Query: 97  NVFVWNSVLRACLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
           + F+ N+++RA      P    R  S +  M+   + PNKFT+P + KAC+       GV
Sbjct: 107 DAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPG--VGV 164

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFG--CVNKARQILDDGSKSDVICWNALIDGYLK 211
           Q HA  +K G   D +V ++ I MY+CFG   +  AR + D  +KS  + W+A+I GY++
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVR 224

Query: 212 CGDIEGAKELFKSTK---------------------------------------DKNTGS 232
            G    A  LF+  +                                        K+   
Sbjct: 225 SGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTL 284

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
            NA+I   A+ G  + A  +F  M ++  ++W+++ID    +G  KEA+ VF EM+   +
Sbjct: 285 CNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGV 344

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMA 350
           +P       VL AC+  G +D+G    + + R +  +D  +     +VDM+ + G ++ A
Sbjct: 345 RPDDVAFIGVLTACSHAGMVDEGYGYFESM-RMAYGIDPKIEHYGCMVDMFGRAGMVERA 403

Query: 351 WKVFEDMKMK-EVFTWNAMIGGLAMHGRAD 379
            +    M MK     W  ++     HGR +
Sbjct: 404 MEFVHKMPMKPNPIIWRTLVAACRAHGRLE 433



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 16/276 (5%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL--ALKVFNSVHKPNVFVWNSVLRAC 108
           QAHA  LK G   D YVS TL+  H  S F    L  A  VF+ + K +   W++++   
Sbjct: 165 QAHAAALKFGFTTDQYVSNTLI--HMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGY 222

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +        + L+ EM     +P++ T   V  A +   A +    V   V K G+   V
Sbjct: 223 VRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSV 282

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + ++ I   A  G ++ A  +     +  ++ W ++ID     G  + A  +F+  K  
Sbjct: 283 TLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTA 342

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIIDGYTKDGYYKE 279
                  ++  +++  +  G  +E    F  M      D     +  ++D + + G  + 
Sbjct: 343 GVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVER 402

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           A+E  ++M    +KP   +   ++AAC + G L+ G
Sbjct: 403 AMEFVHKM---PMKPNPIIWRTLVAACRAHGRLELG 435


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/652 (33%), Positives = 346/652 (53%), Gaps = 71/652 (10%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGH----------FQDHYVSGTLVKCHANSRFS 81
           K + D +      SW  L  A A+   SGH           Q+  +    +     + FS
Sbjct: 43  KGVFDRMPRWSLGSWTALLSAFAL---SGHHEEAKTLFDTMQERDLIAWTIMLTVLATFS 99

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N E A   F+ + + ++  W ++L A  E  +       + +M     + N F++ ++  
Sbjct: 100 NIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQM----PERNLFSWTSLLS 155

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           A                                   Y   G V  A ++ D   + +++ 
Sbjct: 156 A-----------------------------------YGRSGDVKAAGRVFDSMPEWNLVA 180

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           W A++ GY   GD+  AK  F S  +++  ++ AM+S +A  G     R++F  M ++D 
Sbjct: 181 WTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQR-----DKIKPRKFVLSCVLAACASLGALDQGI 316
           I+W+ ++    ++   +E+ E+F+ M R       + P +     +L AC+ LGAL +G 
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH  V       D V+  ALV+ Y +CG L  A  VF+ M+ ++V +W++MI   A  G
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           R D+A+EL+ +M  E   PD I F  VL AC+++G+++        +     ++P +EHY
Sbjct: 361 RVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 420

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
            C+VD+LGRAG L +AE+++  MP  P   ++  +L AC+ + +VE GE   +++ E++P
Sbjct: 421 ACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDP 480

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
           +N              +R  D A++RKLM+ERGIK  PG S I+V   +HEF  GD  HP
Sbjct: 481 ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHP 540

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
           Q  EIY  ++++  ++K  GY  ++  VL D++E+EKE    YHSEKLAIAFG I+T PG
Sbjct: 541 QRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPG 600

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A +R++KNLRVC DCH+ATK+ISKV  R+I+VRD  R+HHF+NG CSCND+W
Sbjct: 601 APLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 31/322 (9%)

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAM 236
           M+   GCV +ARQI D  +  D   W  ++  Y + GD+  AK +F      + GS+ A+
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPR 295
           +S FA  G  EEA+ LF+ M ++D I W+ ++         ++A   F++M +RD +   
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLV--- 117

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
               + +LAA A  G ++      D +   ++       T+L+  Y + G +  A +VF+
Sbjct: 118 --AWTAMLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAAGRVFD 171

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M    +  W AM+ G ++ G    A   F  M       D I +  +LSA A  G    
Sbjct: 172 SMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPER----DLIAWTAMLSAYAFNGH--- 224

Query: 416 GLQALTYMQQMYGIDPEVE--HYGCIVDLLGRAGYLAEAEEVISSMP--------MEPNA 465
               L Y ++++   PE +   +  +V  L     L E++E+   MP        M PN 
Sbjct: 225 ----LRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNR 280

Query: 466 AVWEALLGACRKHGEVEFGERL 487
             +  LL AC   G +  G ++
Sbjct: 281 VTFITLLDACSFLGALAEGRKI 302


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/644 (34%), Positives = 366/644 (56%), Gaps = 45/644 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H+ ++  G   D +V   L+  +A  +  + E  LKVF+ + + N   WNS++ A  
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWNSIISAEA 252

Query: 110 EHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           +       + L+  M   +   +P++FT+ T+   C+    D +G Q+HAH+++  +  +
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK- 226
           + V++  + MY+  G +N A++I +  ++ +   WN++I+GY + G+ + A  LFK  + 
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 372

Query: 227 ---DKNTGSYNAMISGFARFGRFEEARKLFN----EMNDKDEITWSAIIDGYTKDGYYKE 279
                +  S ++M+S        ++ R+L N       +++ I    ++D Y K G    
Sbjct: 373 NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDY 432

Query: 280 ALEVFNEMQRDKIKPRKFVL-SCVLAACASLG-----------ALDQGIWIHDHVKRNSI 327
           A +V+++  +   K R   L + +LA  A+ G            L+  I  +D +   +I
Sbjct: 433 AWKVYDQTIK---KDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIE-YDVLTMVTI 488

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
               VL TALVDMY+KCG +  A  VF++M  K + +WNAMI G + HG + +A+ L+ +
Sbjct: 489 VNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 548

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M ++ M P+ +TF  +LSAC+H G+++ GL+  T MQ+ Y I+ + EHY C+VDLLGRAG
Sbjct: 549 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 608

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------- 499
            L +A+E +  MP+EP  + W ALLGACR H +++ G    + L E++PQN         
Sbjct: 609 RLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSN 668

Query: 500 ------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 R  +V  +R++MK +G+K +PG S I++N  I  F  G  +HP+ +EIY  L+ 
Sbjct: 669 IYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRH 728

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY---HSEKLAIAFGFINTDPGATIRVIKN 610
           +  + K  GY P++S +L ++ + ++E   +Y   HSE+LA++ G I+    +TIRV KN
Sbjct: 729 LTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKN 788

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LR+C DCH+ATK ISK+  R II RD  R+HHF NGKCSC D+W
Sbjct: 789 LRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 225/497 (45%), Gaps = 56/497 (11%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSR-FSNFELALKVFNSVHKPNVFVWNS 103
           S+Q  K  H  ++ +G+  D Y+   ++  +A S    +   A K+F  + + N+  WN+
Sbjct: 86  SFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNT 145

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++ A    ++      ++  M+ +   P+ FT+ +  + C    +   G QVH+ ++  G
Sbjct: 146 MILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG 205

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF- 222
             GD  V ++ I MYA         ++ D+  + + + WN++I    + G    A  LF 
Sbjct: 206 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 265

Query: 223 ----------------------------------------KSTKDKNTGSYNAMISGFAR 242
                                                   ++   KN      ++  ++ 
Sbjct: 266 RMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE 325

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            GR   A+++FN M +++  +W+++I+GY ++G  +EAL +F +MQ + IKP  F LS +
Sbjct: 326 CGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSM 385

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L++C SL    +G  +H+ + RN++  + +L   LVDMYAKCG +D AWKV++    K+ 
Sbjct: 386 LSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDR 445

Query: 363 FT--WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-HAGMIDRG--- 416
            T  WN+++ G A  G   ++   F +M    +  D +T   +++       ++D     
Sbjct: 446 NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKC 505

Query: 417 ---LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPNAAVWEA 470
               +A T    M G    +  +  ++    + G   EA  +   MP   M PN   + A
Sbjct: 506 GAITKARTVFDNMNG--KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLA 563

Query: 471 LLGACRKHGEVEFGERL 487
           +L AC   G VE G R+
Sbjct: 564 ILSACSHTGLVEEGLRI 580



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 194/408 (47%), Gaps = 58/408 (14%)

Query: 125 VGVDSKP----NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
             + +KP    N   Y ++ + C  + + + G  +H  ++ NG   D ++ +  + +YA 
Sbjct: 59  TSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYAR 118

Query: 181 FGCVNK---ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-------------- 223
            GC++    AR++ ++  + ++  WN +I  Y +  D   A  +F               
Sbjct: 119 SGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTF 178

Query: 224 --------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMND 258
                   + + ++ G                   NA+I  +A+    E   K+F+EM +
Sbjct: 179 ASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGE 238

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQ--RDKIKPRKFVLSCVLAACASLGALDQGI 316
           ++++TW++II    + G++ +AL +F  MQ   D I+P +F  + +L  CA+    +QG 
Sbjct: 239 RNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGR 298

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH H+ R +I  + ++ T LV MY++CGRL+ A ++F  M  +  ++WN+MI G   +G
Sbjct: 299 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 358

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +A+ LF +MQ   ++PD  + + +LS+C       +G +   ++     +   +E  
Sbjct: 359 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI-----VRNTMEEE 413

Query: 437 G----CIVDLLGRAGYLAEAEEVI-SSMPMEPNAAVWEALLGACRKHG 479
           G     +VD+  + G +  A +V   ++  + N A+W ++L      G
Sbjct: 414 GILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKG 461



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 7/255 (2%)

Query: 240 FARFGRFEE---ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           +AR G  ++   ARKLF EM +++   W+ +I  Y +   Y EA  +F+ M +  + P  
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           F  +  L  C +L + D G  +H  +       D  +G AL+DMYAKC   +   KVF++
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDRITFACVLSACAHAGMID 414
           M  +   TWN++I   A  G  +DA+ LF +MQ  +  ++PD+ TF  +L+ CA+    +
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           +G Q   ++ +   I   +     +V +    G L  A+E+ + M  E NA  W +++  
Sbjct: 296 QGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEG 353

Query: 475 CRKHGEVEFGERLGK 489
            +++GE +   RL K
Sbjct: 354 YQQNGETQEALRLFK 368


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 351/674 (52%), Gaps = 117/674 (17%)

Query: 29  FSQKTILDIL-NTKC-HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           F   TIL +L +T C    W      HA I K GH  + +V   L+   A S     ++A
Sbjct: 140 FVFTTILKLLVSTDCGELGWG----IHACIFKLGHESNAFVGTALID--AYSVCGRVDVA 193

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSI 145
            +VF+ +   ++  W  ++  C   N+ ++  + L+S+M  V  KPN FT+ +VFKAC  
Sbjct: 194 REVFDGILYKDMVSWTGMV-TCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLG 252

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            EA   G  VH                         GC  K+R  LD      +    AL
Sbjct: 253 LEAFDVGKSVH-------------------------GCALKSRYELD------LYVGVAL 281

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           +D Y K GDI+                               +AR+ F E+  KD I WS
Sbjct: 282 LDLYTKSGDID-------------------------------DARRAFEEIPKKDVIPWS 310

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I  Y +    KEA+E+F +M++  + P +F  + VL ACA++  L+ G  IH HV + 
Sbjct: 311 FMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI 370

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  D  +  AL+D+YAKCGR++ + ++F +   +   TWN +I G    G  + A+ LF
Sbjct: 371 GLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLF 430

Query: 386 FKMQREKM-------------------------------RPDRITFACVLSACAHAGMID 414
             M   ++                               +PD++TF  VLSACA+AG++D
Sbjct: 431 LNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLD 490

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           +G    T M Q +GI+P +EHY C+V LLGR G+L +A ++I  +P +P+  VW ALLGA
Sbjct: 491 QGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 550

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           C  H ++E G    + +LEMEPQ++              R D+VA +RK MK +G+K  P
Sbjct: 551 CVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEP 610

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G S I+  G +H F  GD SHP+V+ I  ML+ +  K K  GY PN + VL D+++EEKE
Sbjct: 611 GLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKE 670

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSE+LA++FG I T  G+ IR++KNLR+C DCH+A K ISKV +R+I+VRD  R+
Sbjct: 671 RLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRF 730

Query: 641 HHFRNGKCSCNDFW 654
           HHF+ G CSC D+W
Sbjct: 731 HHFQEGLCSCGDYW 744



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 128/247 (51%), Gaps = 13/247 (5%)

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           E+ K     +  ++N +++ + +     +A KLF+EM +++ I++  +I GY +   + E
Sbjct: 63  EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLE 122

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+E+F  + R+  +   FV + +L    S    + G  IH  + +     +A +GTAL+D
Sbjct: 123 AIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALID 182

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            Y+ CGR+D+A +VF+ +  K++ +W  M+   A +    +A++LF +M+    +P+  T
Sbjct: 183 AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFT 242

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDP----EVEHY--GCIVDLLGRAGYLAEAE 453
           FA V  AC        GL+A    + ++G       E++ Y    ++DL  ++G + +A 
Sbjct: 243 FASVFKACL-------GLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 454 EVISSMP 460
                +P
Sbjct: 296 RAFEEIP 302



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKF---VLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           +++ G+  ++ ++  E     + P +F     +  L  C       +G  +H  + +   
Sbjct: 11  FSRRGFSVQSAKLTQEFV-GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGG 69

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
           C+D      L++MY K   L  A K+F++M  +   ++  +I G A   R  +AIELF +
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 388 MQREKMRPDRITFACVL 404
           + RE    +   F  +L
Sbjct: 130 LHREGHELNPFVFTTIL 146


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 323/572 (56%), Gaps = 54/572 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y T+ K C++ +   +G  VHAH++++    D+ + ++ + MYA  G + +AR++ +   
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 196 KSDVICWNALIDGY----------------LKCGDIEGAKELFKSTK------------- 226
           + D + W  LI GY                L+ G       L    K             
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 227 ----------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                     D N    +A++  + R+G  ++A+ +F+ +  +++++W+A+I G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            ++ALE+F  M RD  +P  F  + +  AC+S G L+QG W+H ++ ++   + A  G  
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAK G +  A K+F+ +  ++V +WN+++   A HG   +A+  F +M+R  +RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I+F  VL+AC+H+G++D G      M++  GI PE  HY  +VDLLGRAG L  A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP+EP AA+W+ALL ACR H   E G    + + E++P +               R +
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           D A++RK MKE G+K  P  S +++   IH F   D  HPQ +EI    ++++ K+K  G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P++S V+  +D++E+E   +YHSEK+A+AF  +NT PG+TI + KN+RVC DCH+A K
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           L SKV  R+IIVRD  R+HHF++G CSC D+W
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 202/445 (45%), Gaps = 53/445 (11%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA---HAVILK 58
           S K  + DL       ++  + IP       T+L     KC T ++ L Q    HA IL+
Sbjct: 34  SLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLL----KKC-TVFKLLIQGRIVHAHILQ 88

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           S    D  +  TL+  +A  +  + E A KVF  + + +   W +++    +H+ P   +
Sbjct: 89  SIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 146

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
             +++M+     PN+FT  +V KA +       G Q+H   VK G   +VHV S+ + +Y
Sbjct: 147 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------- 223
             +G ++ A+ + D     + + WNALI G+ +    E A ELF+               
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 224 -------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDK 259
                  ST     G +                 N ++  +A+ G   +ARK+F+ +  +
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D ++W++++  Y + G+ KEA+  F EM+R  I+P +     VL AC+  G LD+G   +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRA 378
           + +K++ I  +A     +VD+  + G L+ A +  E+M ++     W A++    MH   
Sbjct: 387 ELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNT 446

Query: 379 D---DAIELFFKMQREKMRPDRITF 400
           +    A E  F++  +   P  I +
Sbjct: 447 ELGAYAAEHVFELDPDDPGPHVILY 471



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           N+++   I   +   + +L  C     L QG  +H H+ ++    D V+G  L++MYAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+ A KVFE M  ++  TW  +I G + H R  DA+  F +M R    P+  T + V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            A A       G Q   +  +  G D  V     ++DL  R G + +A+ V  ++    N
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR-N 226

Query: 465 AAVWEALL-GACRKHG 479
              W AL+ G  R+ G
Sbjct: 227 DVSWNALIAGHARRSG 242


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 350/671 (52%), Gaps = 68/671 (10%)

Query: 50  KQAHAVILKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVH--KPNVFVWNSVL 105
           ++AHA  LK+G    H  +    L+  +A  R      A ++F      + +V  WN+++
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 91

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-L 164
              ++       +    +MV +  +P+  T+ +   ACS  E    G ++HA+V+K+  L
Sbjct: 92  SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 151

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKELF 222
             +  V S+ + MYA    V KARQ+ D    S   +  WNA+I GY + G  E A  LF
Sbjct: 152 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 211

Query: 223 ----------------------------------------KSTKDKNTGSYNAMISGFAR 242
                                                   K     N    NA++  +AR
Sbjct: 212 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 271

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR---DKIKPRKFVL 299
            G+ + AR++F  ++  D ++W+ +I G    G+  +A ++  EMQ+     + P    L
Sbjct: 272 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 331

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L  CA L A  +G  IH +  R+++  D  +G+ALVDMYAKCG L ++  VF+ +  
Sbjct: 332 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 391

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQ 418
           +   TWN +I    MHG   +A  LF +M    + RP+ +TF   L+AC+H+GM+DRGLQ
Sbjct: 392 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 451

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRK 477
               M++ +G++P  +   C+VD+LGRAG L EA  +++SM   E   + W  +LGACR 
Sbjct: 452 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 511

Query: 478 HGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSS 523
           H  V  GE  G+              +L  +     +    A++R  M+ RG+   PG S
Sbjct: 512 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 571

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+V+G IH F  G+ +HP  +E++  ++ +  ++   GY+P++S VL D+D+ +K    
Sbjct: 572 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVL 631

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
           + HSEKLAIAFG +   PGATIRV KNLRVC DCH A K +SK+  R+I++RD  R+HHF
Sbjct: 632 RCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHF 691

Query: 644 RNGKCSCNDFW 654
           RNG+CSC D+W
Sbjct: 692 RNGQCSCGDYW 702


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/659 (32%), Positives = 352/659 (53%), Gaps = 56/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA+++ +G+    +++  LV  +  S+    + ALK+F+++ + N+  W +++    
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMY--SKCGELDHALKLFDTMPQRNLVSWTAMISGLS 82

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++++    I  +  M      P +F + +  +AC+   + + G Q+H   +K G+  ++ 
Sbjct: 83  QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELF 142

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+   MY+  G +  A ++ ++    D + W A+IDGY K G+ E A   FK   D+ 
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 230 T--------------GSY-------------------------NAMISGFARFGRFEEAR 250
                          G+                          NA+   +++ G  E A 
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESAS 262

Query: 251 KLFN-EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            +F  +   ++ ++++ +IDGY +    ++ L VF E++R  I+P +F  S ++ ACA+ 
Sbjct: 263 NVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQ 322

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            AL+QG  +H  V + +   D  + + LVDMY KCG L+ A + F+++       WN+++
Sbjct: 323 AALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLV 382

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                HG   DAI++F +M    ++P+ ITF  +L+ C+HAG+++ GL     M + YG+
Sbjct: 383 SVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  EHY C++DLLGRAG L EA+E I+ MP EPNA  W + LGACR HG+ E G+   +
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAE 502

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L+++EP+N              R+ +DV  +R  M++  +K  PG S +DV    H F 
Sbjct: 503 KLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFG 562

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             D SHP+   IY  L  +++++K  GY P +  V  D+D+  KE     HSE++A+AF 
Sbjct: 563 AEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFA 622

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I+   G  I V KNLRVC DCHSA K ISKV  R IIVRD  R+HHF +G CSC D+W
Sbjct: 623 LISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 199/435 (45%), Gaps = 64/435 (14%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V +  + T+  + G Q+HA ++  G      + +  + MY+  G ++ A ++ D   + +
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 199 VICWNALIDGYLK----------------CGD-------------------IEGAKELFK 223
           ++ W A+I G  +                CG+                   IE  K++  
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 224 STKDKNTGSYNAMISG----FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                  GS   + S     +++ G   +A K+F EM  KDE++W+A+IDGY+K G ++E
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 190

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL  F +M  +++   + VL   L AC +L A   G  +H  V +     D  +G AL D
Sbjct: 191 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD 250

Query: 340 MYAKCGRLDMAWKVFE-DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           MY+K G ++ A  VF  D + + V ++  +I G     + +  + +F +++R+ + P+  
Sbjct: 251 MYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 310

Query: 399 TFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           TF+ ++ ACA+   +++G Q     M+  +  DP V     +VD+ G+ G L +A +   
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFD 368

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIK 517
            +  +P    W +L+    +HG       LGK             D  K+ + M +RG+K
Sbjct: 369 EIG-DPTEIAWNSLVSVFGQHG-------LGK-------------DAIKIFERMVDRGVK 407

Query: 518 TNPGSSMIDVNGVIH 532
            N  + +  + G  H
Sbjct: 408 PNAITFISLLTGCSH 422


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/663 (34%), Positives = 351/663 (52%), Gaps = 61/663 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H    ++G   D +VS  LV  +A  + ++F  A  VF  +   +V  WN++L    
Sbjct: 149 RAVHCHAARAGLHADLFVSTALVDVYA--KCASFRHAATVFRRMPARDVVAWNAMLAGYA 206

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD-- 167
            H +    I+    M   D  PN  T   +    +   A  +G  VHA+ V+     D  
Sbjct: 207 LHGKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHK 265

Query: 168 --VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
             V V ++ + MYA  G +  A ++ +  +  + + W+AL+ G++ CG +  A  LFK  
Sbjct: 266 DGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDM 325

Query: 224 --------------------------------------STKDKNTGSYNAMISGFARFGR 245
                                                 S    +  + N+++S +A+ G 
Sbjct: 326 LAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGL 385

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            ++A  LF++M  KD +++SA++ GY ++G   EA  VF +MQ   ++P    +  ++ A
Sbjct: 386 IDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPA 445

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C+ L AL  G   H  V    I  +  +  AL+DMYAKCGR+D++ ++F+ M  +++ +W
Sbjct: 446 CSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSW 505

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           N MI G  +HG   +A  LF  M+ +   PD +TF C++SAC+H+G++  G +    M  
Sbjct: 506 NTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAH 565

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            YGI P +EHY  +VDLL R G+L EA + I  MP++ +  VW ALLGACR H  ++ G+
Sbjct: 566 KYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGK 625

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           ++  ++ ++ P+                R D+ A++R + KE+G K +PG S I++NG +
Sbjct: 626 QVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSL 685

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  GD SH Q  EIY  L  I+  +   GY  ++S VL D++EEEKE A  YHSEKLA
Sbjct: 686 HAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLA 745

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAFG +      TI V KNLRVC DCH+  K ++ V KR IIVRD  R+HHF+NG+CSC 
Sbjct: 746 IAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCG 805

Query: 652 DFW 654
           DFW
Sbjct: 806 DFW 808



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 199/468 (42%), Gaps = 52/468 (11%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           +  LA  +F+ +  P +  +N+++RA         +    S       +PN +T+P V K
Sbjct: 78  DLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLK 137

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS     +    VH H  + GL  D+ V ++ + +YA       A  +       DV+ 
Sbjct: 138 ACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA 197

Query: 202 WNALIDGYL---KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR-------- 250
           WNA++ GY    K  D      L +     N  +  A++   A+ G   + R        
Sbjct: 198 WNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 251 -------------------------------KLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                          ++F  M  ++E+TWSA++ G+   G   E
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 280 ALEVFNEMQRDK---IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           A  +F +M       + P    ++  L ACA+L  L  G  +H  + ++ +  D   G +
Sbjct: 318 AFSLFKDMLAQGLCFLSPTS--VASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNS 375

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+ MYAK G +D A  +F+ M +K+  +++A++ G   +G+AD+A  +F KMQ   ++PD
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
             T   ++ AC+H   +  G      +  + GI  E      ++D+  + G +  + ++ 
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASETSICNALIDMYAKCGRIDLSRQIF 494

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
             MP   +   W  ++     HG    G+    + L+M+ Q    DDV
Sbjct: 495 DVMPAR-DIVSWNTMIAGYGIHG---LGKEATALFLDMKHQACEPDDV 538



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 169/386 (43%), Gaps = 54/386 (13%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDH----YVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98
           H +    +  HA  +++    DH     V   L+  +A  +  +   A +VF ++   N 
Sbjct: 242 HGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYA--KCGHLVYASRVFEAMAVRNE 299

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT----VFKACSITEADKEGVQ 154
             W++++   +         SL+ +M+   ++   F  PT      +AC+       G Q
Sbjct: 300 VTWSALVGGFVLCGRMLEAFSLFKDML---AQGLCFLSPTSVASALRACANLSDLCLGKQ 356

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +HA + K+GL  D+   +S + MYA  G +++A  + D     D + ++AL+ GY++ G 
Sbjct: 357 LHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGK 416

Query: 215 IEGAKELFKSTKDKN---------------------------------------TGSYNA 235
            + A  +F+  +  N                                       T   NA
Sbjct: 417 ADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNA 476

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  +A+ GR + +R++F+ M  +D ++W+ +I GY   G  KEA  +F +M+    +P 
Sbjct: 477 LIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPD 536

Query: 296 KFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
                C+++AC+  G + +G  W H    +  I         +VD+ A+ G LD A++  
Sbjct: 537 DVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFI 596

Query: 355 EDMKMK-EVFTWNAMIGGLAMHGRAD 379
           + M +K +V  W A++G   +H   D
Sbjct: 597 QGMPLKADVRVWGALLGACRVHKNID 622



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 23/305 (7%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G    AR LF+++       ++A+I  Y+  G         +  +R   +P  +    VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC++L  L     +H H  R  +  D  + TALVD+YAKC     A  VF  M  ++V 
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WNAM+ G A+HG+  D I     MQ +   P+  T   +L   A  G + +G     Y 
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 424 QQMYGIDPE---VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA---CRK 477
            +   +      V     ++D+  + G+L  A  V  +M +  N   W AL+G    C +
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVGGFVLCGR 314

Query: 478 HGEV--EFGERLGKILLEMEPQN-----RRCDDVA------KMRKLMKERGIKTN--PGS 522
             E    F + L + L  + P +     R C +++      ++  L+ + G+ T+   G+
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGN 374

Query: 523 SMIDV 527
           S++ +
Sbjct: 375 SLLSM 379



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 6/173 (3%)

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG L +A  +F+ +    +  +NA+I   ++ G A          +R   +P+  TF  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 404 LSACAHAGMID-RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           L AC  + ++D R  +A+       G+  ++     +VD+  +      A  V   MP  
Sbjct: 136 LKAC--SALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG 515
            +   W A+L     HG  ++ + +  +LL  +        +  +  L+ + G
Sbjct: 194 -DVVAWNAMLAGYALHG--KYSDTIACLLLMQDDHAPNASTLVALLPLLAQHG 243


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 285/462 (61%), Gaps = 13/462 (2%)

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263
           +LI  Y +C     A  +F    D    S N +I    + G+ + A+K+F +M+ +D +T
Sbjct: 110 SLISTYAQCHRPHIALHVFSRILD--LFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVT 167

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+++I GY ++  + +AL +F  M   K++P  F  + V+ ACA LGAL    W+H  + 
Sbjct: 168 WNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMV 227

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
              + ++ +L  AL+DMYAKCGR+D++ +VFE++    V  WNAMI GLA+HG A DA  
Sbjct: 228 EKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATL 287

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           +F +M+ E + PD ITF  +L+AC+H G+++ G +    MQ  + I P++EHYG +VDLL
Sbjct: 288 VFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLL 347

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------Q 497
           GRAG + EA  VI  M MEP+  +W ALL ACR H + E GE     +  +E        
Sbjct: 348 GRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGEVAIANISRLESGDFVLLS 407

Query: 498 NRRC-----DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
           N  C     D   ++R++MK RG++ + G S +++   IH+F     SHP++K IY +L+
Sbjct: 408 NMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLE 467

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
            +I++ K+EG++P +  VL D+ EEEKE    +HSEKLA+A+  + T PG  IR+ KNLR
Sbjct: 468 GLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLR 527

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +C DCH+  K++SK+  R IIVRDR+R+H F  G CSC D+W
Sbjct: 528 ICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           ++A KVF  +   +V  WNS++   + +   +  +S++  M+    +P+ FT+ +V  AC
Sbjct: 151 DIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTAC 210

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           +   A      VH  +V+  +  +  + ++ I MYA  G ++ +RQ+ ++ ++  V  WN
Sbjct: 211 ARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWN 270

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           A+I G    G    A  +F   + +    ++ ++  +++  +  G  EE RK F  M ++
Sbjct: 271 AMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNR 330

Query: 260 DEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             I      +  ++D   + G  +EA  V  EM   +++P   +   +L+AC
Sbjct: 331 FMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEM---RMEPDIVIWRALLSAC 379


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 339/592 (57%), Gaps = 70/592 (11%)

Query: 131 PNKFTYPTVFKAC------SITEADKEGVQV---HAHVVKNGLCGDVHVKSSGIQMYACF 181
           PN  + P   K+       S+ +  K   QV   HA +++NG   D  +    ++  +C 
Sbjct: 18  PNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLR--SCS 75

Query: 182 GC--VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------ST 225
            C  ++ A +I       +V  + ALIDG++  G+   A +L+               ++
Sbjct: 76  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135

Query: 226 KDKNTGSYNAMISG-------------------------FARFGRFEEARKLFNEMND-- 258
             K  GS  A+  G                         + + G   +AR++F EM +  
Sbjct: 136 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 195

Query: 259 --KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             KD + W+A+IDG+ ++     ALE F  MQ + ++P +F + CVL+AC+ LGAL+ G 
Sbjct: 196 VAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 255

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           W+H ++++  I ++  +G AL++MY++CG +D A  VF++MK ++V T+N MI GL+M+G
Sbjct: 256 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           ++  AIELF  M   ++RP  +TF  VL+AC+H G++D G +    M + YG++P++EHY
Sbjct: 316 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHY 375

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE--- 493
           GC+VDLLGR G L EA ++I +M M P+  +   LL AC+ H  +E GE++ K+L +   
Sbjct: 376 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQ 435

Query: 494 -----------MEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
                      +   + +  + A++R  MKE G++  PG S I+VN  IHEF  GD  HP
Sbjct: 436 ADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHP 495

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
           + + IY  L+++   L++EGY P    VL DI++ EKE A   HSE+LAI +G I+T+P 
Sbjct: 496 RKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPC 555

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             IRV+KNLRVC DCHSA KLI+K+ +R ++VRDR R+H+F NG CSC D+W
Sbjct: 556 TVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 127/524 (24%), Positives = 222/524 (42%), Gaps = 107/524 (20%)

Query: 15  KPEEISATNIPTS--EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           KP   S +N P S     QK I+ +L    H +   +   HA ++++GH QD ++   L+
Sbjct: 15  KPHPNSNSN-PKSLKSLDQKQIISLLQRSKHIN--QVLPIHAQLIRNGHSQDPFMVFELL 71

Query: 73  ----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
               KCHA       + A ++F   H PNV+++ +++   +     +  I LYS M+   
Sbjct: 72  RSCSKCHA------IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS 125

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+ +   ++ KAC    A +EG +VH+  +K GL  +  V+   +++Y   G +  AR
Sbjct: 126 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDAR 185

Query: 189 QIL----DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG------------- 231
           ++     +D    D +CW A+IDG+++  ++  A E F+  + +N               
Sbjct: 186 RVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 245

Query: 232 -------------SY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
                        SY             NA+I+ ++R G  +EA+ +F+EM D+D IT++
Sbjct: 246 SQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYN 305

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I G + +G  ++A+E+F  M   +++P       VL AC+  G +D G  I   + R+
Sbjct: 306 TMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRD 365

Query: 326 SICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
                 +     +VD+  + GRL+ A+ +   MKM                         
Sbjct: 366 YGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT------------------------ 401

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
                     PD I    +LSAC     ++ G Q    ++     D     Y  +  +  
Sbjct: 402 ----------PDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGT--YVLLSHVYA 449

Query: 445 RAGYLAEAEEVISSM------------PMEPNAAVWEALLGACR 476
            +G   EA +V + M             +E N  + E LLG  R
Sbjct: 450 SSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLR 493


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/495 (40%), Positives = 293/495 (59%), Gaps = 15/495 (3%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  YA  G VN AR++ +   + + + W A++ GY++ G +E A ELF +  +    + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           AM+ GF + G  + A+ +F +M ++D+ TWSA+I  Y ++ +  EAL  F EM    ++P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               +  +L  CA+L  LD G  +H  + R S  +D    +AL+ MY KCG LD A +VF
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
              + K++  WN+MI G A HG  + A+ +F  M+   M PD IT+   L+AC++ G + 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +    M     I P  EHY C+VDLLGR+G + EA ++I +MP+EP+A +W AL+GA
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H   E  E   K LLE+EP N               R +D +KMRK +  R +  +P
Sbjct: 512 CRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSP 571

Query: 521 GSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           G S I+ +  +H F +GD  +HP+   I  +L+K+   L   GYS + S VL DIDEE+K
Sbjct: 572 GCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQK 631

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
             + +YHSE+ A+A+G +    G  IRV+KNLRVC DCHSA KLI+K+  R+I++RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANR 691

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 46/314 (14%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G VN+AR++ D+    DV+ W A++ GY + G I  A+ LF     +N  S+ AMISG+A
Sbjct: 157 GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G    ARKLF  M +++E++W+A++ GY + G+ ++A E+FN M    +         
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV--------- 267

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
             AAC                             A++  + + G +D A  VFE M+ ++
Sbjct: 268 --AAC----------------------------NAMMVGFGQRGMVDAAKTVFEKMRERD 297

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             TW+AMI     +    +A+  F +M    +RP+  +   +L+ CA   ++D G +   
Sbjct: 298 DGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGE 480
            M +    D +V     ++ +  + G L +A+ V  +   EP +  +W +++    +HG 
Sbjct: 358 AMLRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHG- 413

Query: 481 VEFGERLGKILLEM 494
              GE+   I  +M
Sbjct: 414 --LGEQALGIFHDM 425



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 32/288 (11%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NA I    + G+IEGA+  F++   + T SYNA+++G+ R    + A  LF  M  +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 TWSAIIDGYTKDGYYKEAL-EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +++A+I G +     ++ L +    +      P     + +L      G L   I +   
Sbjct: 81  SYNALISGLS---LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 322 V-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           + +RN +    +LG  L       GR++ A ++F++M  ++V  W AM+ G    GR  +
Sbjct: 138 MPERNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A  LF +M +  +    +++  ++S  A  G ++         ++++ + PE        
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA-------RKLFEVMPERNEVSWTA 241

Query: 441 DLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            L+G  +AG++ +A E+ ++MP  P AA    ++G         FG+R
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG---------FGQR 280



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 144/350 (41%), Gaps = 59/350 (16%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS--- 238
           G +  AR   +         +NAL+ GY +    + A  LF+    ++  SYNA+IS   
Sbjct: 31  GNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLS 90

Query: 239 ------------------------------GFARFGRFEEARKLFNEMNDKDEITWSAII 268
                                         G+ R G   +A +LF +M +++ ++++ ++
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 269 DGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
            G    G   EA  +F+EM  RD +       + +L+     G + +   + D + + ++
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDRDVV-----AWTAMLSGYCQAGRITEARALFDEMPKRNV 205

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
               V  TA++  YA+ G +++A K+FE M  +   +W AM+ G    G  +DA ELF  
Sbjct: 206 ----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNA 261

Query: 388 MQREKMRPDRITFAC--VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           M      P+    AC  ++      GM+D    A T  ++M   D     +  ++    +
Sbjct: 262 M------PEHPVAACNAMMVGFGQRGMVD---AAKTVFEKMRERDDGT--WSAMIKAYEQ 310

Query: 446 AGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
             +L EA      M    + PN     ++L  C     +++G  +   +L
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 129/294 (43%), Gaps = 25/294 (8%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQD----------HYVSGTLVKCHANSRFS 81
           + + +++  +   SW  +   +   +++GH +D          H V+          +  
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGY---IQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             + A  VF  + + +   W+++++A  ++      +S + EM+    +PN  +  ++  
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
            C+       G +VHA +++     DV   S+ I MY   G ++KA+++       D++ 
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WN++I GY + G  E A  +F   +      +  +Y   ++  +  G+ +E R++FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
               I      +S ++D   + G  +EA ++   M    ++P   +   ++ AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/626 (36%), Positives = 341/626 (54%), Gaps = 86/626 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCH-ANSRFSNFELALKVFNSV--HKP-NVFVWNSVL 105
           KQ HA  L++G    H +    +  H A  R      A+ V + +  H P + F  N+VL
Sbjct: 32  KQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVL 91

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R       P   + L+   + +   P+  TYP + +AC+   A           ++ G C
Sbjct: 92  RIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLA-----------LREGEC 137

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
             +H +++                   +G  + V   N+L+  Y  CG            
Sbjct: 138 --LHAEAA------------------KNGFVTLVFVQNSLVHLYGACG------------ 165

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEM--NDKDEITWSAIIDGYTKDGYYKEALEV 283
                               FE A K+F+EM    ++ ++W+++++ +  +G   E L V
Sbjct: 166 -------------------LFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTV 206

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F EM      P  F +  VL ACA  GAL  G  +H +V++  +  ++ +  AL+D+YAK
Sbjct: 207 FWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAK 266

Query: 344 CGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           CG ++ A ++FE+M + + V +W ++I GLA +G   +A+ELF  M+REK+ P  IT   
Sbjct: 267 CGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVG 326

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL AC+H G++D G +    M++ YGI P +EH GC+VDLLGRAG + EA + I +MP+E
Sbjct: 327 VLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE 386

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           PNA VW  LLG+C  H ++E G+   + L+E++P +                  DV  +R
Sbjct: 387 PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLR 446

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K M +  ++ NPG S++++   ++EF  GD SHP+ ++IY ML +I E+L+ EGY P +S
Sbjct: 447 KTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTS 506

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL DI+EEEKETA  YHSE+LAIAF  + + PG  IR+IKNLR+C DCH A  LISKV+
Sbjct: 507 NVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVY 566

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+IIVRDR R+HHF+ G CSC D+W
Sbjct: 567 DREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 324/577 (56%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y +   AC+ ++  ++  ++HAH+  +   GD  + +S I MY     V  AR +
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 191 LDDGSKSDVICWNALIDGYLK-------CGDIEGA-KELFK------STKDKNTGSY--- 233
            D   + D++ W +LI GY +        G + G  K  FK      ++  K  G+Y   
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 234 ----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                 +A++  +AR G+ + A  +F++++ K+ ++W+A+I G+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G  + AL  F EM R+  +   F  S V ++ A LGAL+QG W+H HV ++   + A
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +G  L+DMYAK G +  A KVF+ +  K++ TWN+M+   A +G   +A+  F +M++ 
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            +  ++ITF C+L+AC+H G++  G +    M++ Y ++PE++HY  +V LLGRAG L  
Sbjct: 349 GVYLNQITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNY 407

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   I  MPMEP AAVW ALL ACR H   + G+     + E++P +             
Sbjct: 408 ALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             + D  A++R +MK  G+K  P  S +++   +H F   D +HPQ +EIY M  +I +K
Sbjct: 468 TGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKK 527

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ EGY P+   VL  +D++EKE   +YHSEKLA+AF  I    GATIR++KN+R+C DC
Sbjct: 528 IRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDC 587

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA K ISKVF R+I+VRD  R+HHF +G CSC D+W
Sbjct: 588 HSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 164/369 (44%), Gaps = 42/369 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA +  S    D ++  +L+  +   R  +   A  VF+ + + ++  W S++    
Sbjct: 71  RKIHAHLGSSRFAGDAFLDNSLIHMYCKCR--SVLDARNVFDQMRRKDMVSWTSLIAGYA 128

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +++ P   I L   M+    KPN FT+ ++ KA         G Q+HA  VK G   DV+
Sbjct: 129 QNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVY 188

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKST 225
           V S+ + MYA  G ++ A  + D     + + WNALI G+ + GD E A     E+ ++ 
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 226 KDKNTGSYNAMISGFARFGRFEE-----------------------------------AR 250
            +    +Y+++ S  AR G  E+                                   AR
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDAR 308

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F+ +++KD +TW++++  + + G  KEA+  F EM++  +   +    C+L AC+  G
Sbjct: 309 KVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGG 368

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMI 369
            + +G    + +K   +  +      +V +  + G L+ A      M M+     W A++
Sbjct: 369 LVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALL 428

Query: 370 GGLAMHGRA 378
               MH  A
Sbjct: 429 AACRMHKNA 437



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 2/192 (1%)

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
           ++ P   V    + ACA    L+    IH H+  +    DA L  +L+ MY KC  +  A
Sbjct: 46  ELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDA 105

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
             VF+ M+ K++ +W ++I G A +    +AI L   M + + +P+  TFA +L A    
Sbjct: 106 RNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
                G Q +  +    G   +V     ++D+  R G +  A  V   +    N   W A
Sbjct: 166 ADSGTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWNA 223

Query: 471 LLGACRKHGEVE 482
           L+    + G+ E
Sbjct: 224 LISGFARKGDGE 235


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/703 (33%), Positives = 367/703 (52%), Gaps = 78/703 (11%)

Query: 27  SEFSQKTILDIL----NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           S  +Q TI  IL    N     S +  KQ HA I+K+   +    S  ++     S  + 
Sbjct: 2   SNSTQHTISKILRKTPNKTLSVSTRQAKQLHAHIVKT---KGTLHSDNILVLSLYSNLNL 58

Query: 83  FELALKVFNSVHKPNVF-VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
            + +L +FNS+  P     W+S+++    H+      S ++ M  +   PN+  +P++ K
Sbjct: 59  LQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLK 118

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA-------------- 187
           A ++ +  K    +HA  V+ GL  D+++ ++ I  YA F    K               
Sbjct: 119 ASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDC 178

Query: 188 -RQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKSTK---------------- 226
            +++ D     DV+ WN +I G+ + G     ++  +E+ K+ K                
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 227 ---DKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
              D N G                   +++I  +A+  R E + + F  +  KD I+W++
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNS 298

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           II G  ++G +   L  F  M ++ +KP     S V+ ACA L AL  G  +H  + R  
Sbjct: 299 IIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLG 358

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              +  + ++LVDMYAKCG + MA  VF+ +  +++  W A+I G AMHG A DA+ LF 
Sbjct: 359 FDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFE 418

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M  + +RP  + F  VL+AC+HAG++D G +    M++ +GI P +EHY  + DLLGRA
Sbjct: 419 NMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRA 478

Query: 447 GYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------- 498
           G L EA + IS+M  ++P  +VW  LL ACR H  VE  E++   LL ++ +N       
Sbjct: 479 GRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLM 538

Query: 499 -------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                  +R  D A++R  M+++G+K  P  S I+V   +H F  GD SHP   +I   L
Sbjct: 539 SNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKAL 598

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
             ++E+++ EGY  +++QVL D+DEE K      HSE+LAIA+G I+T  G TIRVIKN+
Sbjct: 599 DVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNI 658

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVC DCH+A K I+K+  R+I VRD  R+HHF+NG CSC D+W
Sbjct: 659 RVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/554 (37%), Positives = 313/554 (56%), Gaps = 53/554 (9%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVHA +  NG   ++ V +  + MY   G +  A+++ D  SK     W+ ++ GY K G
Sbjct: 71  QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130

Query: 214 DIEGA----KELFKS------------------TKDKNTGSY-----------------N 234
           +        +EL +S                   KD   G                    
Sbjct: 131 NFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCA 190

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            ++  +AR    E+A ++F +M  +D  TW+ +I    + G   E+L  F+ M+   I P
Sbjct: 191 TLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVP 250

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            K  L  V+ ACA LGA+++   IH ++      +D +LGTA++DMYAKCG ++ A  +F
Sbjct: 251 DKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIF 310

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           + M+++ V TW+AMI     HG+ + A+ELF  M R  + P+RITF  +L AC+HAG+I+
Sbjct: 311 DRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIE 370

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +  + M   YG+ P+V+HY C+VDLLGRAG L EA E+I  MP+E +  +W ALLGA
Sbjct: 371 EGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGA 430

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H  ++  ER+ + LL+++ Q                + +D+AK R LM + G++  P
Sbjct: 431 CRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIP 490

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G + I+V   +++F  GD +HP+  EIY MLK++ EKL++ GY P+++ VL+D+DEE K+
Sbjct: 491 GRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQ 550

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSEKLAIAFG +    G  IR+ KNLRVC DCH+  K +S + ++ IIVRD  R+
Sbjct: 551 GLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRF 610

Query: 641 HHFRNGKCSCNDFW 654
           HHF+ G CSC D+W
Sbjct: 611 HHFKEGVCSCRDYW 624



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 46/389 (11%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            ++Q HA I  +G F++  V+  L+  +        E A ++F+ + K + + W+ ++  
Sbjct: 68  QVRQVHAQIATNGAFRNLAVANKLLYMYVER--GALEDAQELFDGMSKRHPYSWSVIVGG 125

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +    +    ++ E++   +  + ++ P V +AC   +  K G  +H   +K GL   
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-------------- 213
             V ++ + MYA    V  A QI     K D+  W  +I    + G              
Sbjct: 186 HFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRN 245

Query: 214 ------------DIEGAKELFKSTKDKNTGSY-------------NAMISGFARFGRFEE 248
                        +    +L    K K   +Y              AMI  +A+ G  E 
Sbjct: 246 QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVES 305

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F+ M  ++ ITWSA+I  Y   G  ++ALE+F  M R  I P +     +L AC+ 
Sbjct: 306 ARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSH 365

Query: 309 LGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWN 366
            G +++G  +         +  D    T +VD+  + GRLD A ++ E M + K+   W 
Sbjct: 366 AGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWG 425

Query: 367 AMIGGLAMHGRADDAIEL---FFKMQREK 392
           A++G   +H   D A  +     K+Q +K
Sbjct: 426 ALLGACRIHRHLDLAERVARSLLKLQSQK 454



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 24/303 (7%)

Query: 17  EEISATNIPTSEFSQKTIL----DILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
            E+  +  P  ++S   ++    D+ + KC       +  H + LK G    H+V  TLV
Sbjct: 140 RELLRSGAPLDDYSAPVVIRACRDLKDLKCG------RLIHCITLKCGLDYGHFVCATLV 193

Query: 73  KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
             +A  R    E A ++F  + K ++  W  ++ A  E   P   +  +  M      P+
Sbjct: 194 DMYA--RCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPD 251

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           K    TV  AC+   A  +   +HA++   G   DV + ++ I MYA  G V  AR I D
Sbjct: 252 KVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFD 311

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEE 248
                +VI W+A+I  Y   G  E A ELF    +S    N  ++ +++   +  G  EE
Sbjct: 312 RMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEE 371

Query: 249 ARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
            ++ F+ M D+  +T     ++ ++D   + G   EALE+   M  +K    + +   +L
Sbjct: 372 GQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEK---DEVLWGALL 428

Query: 304 AAC 306
            AC
Sbjct: 429 GAC 431


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/655 (34%), Positives = 346/655 (52%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+   K GH  + +V   L+   A S  S    A  VFN + + +  VW +++    E++
Sbjct: 185 HSCAWKLGHDHNAFVGSGLID--AYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P     ++S+M     KPN F   +V KA     +   G  +H   +K     + HV  
Sbjct: 243 CPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGG 302

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDK 228
           + + MYA  G +  AR   +     DVI  + +I  Y +    E A ELF    +S+   
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 229 NTGSY-----------------------------------NAMISGFARFGRFEEARKLF 253
           N  S                                    NA++  +A+    + + K+F
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + + D +E++W+ I+ G+++ G  +EAL VF EMQ  ++   +   S VL ACAS  ++ 
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
               IH  +++++   D V+G +L+D YAKCG +  A KVF+ +  +++ +WNA+I G A
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 542

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           +HG+A DA+ELF +M +  +  + ITF  +LS C+  G+++ GL     M+  +GI P +
Sbjct: 543 LHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY CIV LLGRAG L +A + I  +P  P+A VW ALL +C  H  V  G    + +LE
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EPQ+                 D VA +RK M+  G++  PG S +++ G IH F  G  
Sbjct: 663 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 722

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            HP ++ I  ML+ +  K   EGY P+ + VL D+D+E+K      HSE+LA+A+G + T
Sbjct: 723 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMT 782

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR++KNLR C DCH+A  +ISK+ KR+IIVRD  R+HHF +GKCSC D+W
Sbjct: 783 PPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 151/355 (42%), Gaps = 35/355 (9%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           +++  +E+S  ++L          +   KQ H   +K GH  D +V   L+  +A  + +
Sbjct: 358 SSVLPNEYSLSSVLQACTNMVQLDFG--KQIHNHAIKIGHESDLFVGNALMDFYA--KCN 413

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + + +LK+F+S+   N   WN+++    +       +S++ EM        + TY +V +
Sbjct: 414 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+ T + +   Q+H  + K+    D  + +S I  YA  G +  A ++     + D+I 
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533

Query: 202 WNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WNA+I GY   G    A ELF    KS  + N  ++ A++S  +  G       LF+ M 
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
               I      ++ I+    + G   +AL+   ++      P   V   +L++C      
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPS---APSAMVWRALLSSCI----- 645

Query: 313 DQGIWIHDHVKRNSICVDAVLG---------TALVDMYAKCGRLDMAWKVFEDMK 358
                IH +V       + +L            L +MYA  G LD    + + M+
Sbjct: 646 -----IHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMR 695



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 111/231 (48%), Gaps = 5/231 (2%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +++ + + G    AR+LF+ M +++ +++  ++  + + G ++ A  +F  ++ +  +
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
             +FVL+ +L    ++ A      +H    +     +A +G+ L+D Y+ C  +  A  V
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA--CAHAG 411
           F  +  K+   W AM+   + +   ++A  +F KM+    +P+      VL A  C  + 
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSV 279

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           ++ +G+     ++ +   +P V   G ++D+  + G + +A      +P +
Sbjct: 280 VLGKGIHGCA-IKTLNDTEPHVG--GALLDMYAKCGDIKDARLAFEMIPYD 327


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/624 (34%), Positives = 337/624 (54%), Gaps = 51/624 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H   ++ G   D ++   L+  HA  +    E A +VF+ +   +V  W S+    
Sbjct: 151 VKEVHDDAIRCGMMSDAFLGNALI--HAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCY 208

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +    P   ++++ EM     KPN  T  ++  ACS  +  K G  +H   V++G+  +V
Sbjct: 209 VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENV 268

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V S+ + +YA                               +C  ++ A+ +F     +
Sbjct: 269 FVCSALVSLYA-------------------------------RCLSVKQARLVFDLMPHR 297

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVF 284
           +  S+N +++ +     +++   LF++M+ K    DE TW+A+I G  ++G  ++A+E+ 
Sbjct: 298 DVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEML 357

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +MQ    KP +  +S  L AC+ L +L  G  +H +V R+ +  D    TALV MYAKC
Sbjct: 358 RKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKC 417

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+++  VF+ +  K+V  WN MI   AMHG   + + LF  M +  ++P+ +TF  VL
Sbjct: 418 GDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVL 477

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           S C+H+ +++ GLQ    M + + ++P+  HY C+VD+  RAG L EA E I  MPMEP 
Sbjct: 478 SGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPT 537

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
           A+ W ALLGACR +  VE  +     L E+EP N              +   + ++ R L
Sbjct: 538 ASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARIL 597

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MKERGI   PG S + V   +H F  GD ++ +  +IY  L ++ EK+K  GY P++  V
Sbjct: 598 MKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYV 657

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L DID+EEK  +   HSEKLA+AFG +N +  ++IRV KNLR+C DCH+A K +SKV   
Sbjct: 658 LQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGV 717

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            IIVRD +R+HHFRNG CSC D W
Sbjct: 718 TIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 138/343 (40%), Gaps = 57/343 (16%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F  A++LF+ +   D  T S +I  +T  G   EA+ ++  ++   IKP   V   V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC + G   +   +HD   R  +  DA LG AL+  Y KC  ++ A +VF+D+ +K+V 
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W +M       G     + +F +M    ++P+ +T + +L AC+    +  G +A+   
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG-RAIHGF 258

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP----------------------- 460
              +G+   V     +V L  R   + +A  V   MP                       
Sbjct: 259 AVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKG 318

Query: 461 -----------MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRK 509
                      +E + A W A++G C ++G+ E                       +M +
Sbjct: 319 LALFSQMSSKGVEADEATWNAVIGGCMENGQTE--------------------KAVEMLR 358

Query: 510 LMKERGIKTN--PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
            M+  G K N    SS +    ++   R G   H  V   +L+
Sbjct: 359 KMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLI 401


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/495 (40%), Positives = 293/495 (59%), Gaps = 15/495 (3%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  YA  G VN AR++ +   + + + W A++ GY++ G +E A ELF +  +    + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           AM+ GF + G  + A+ +F +M ++D+ TWSA+I  Y ++ +  EAL  F EM    ++P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               +  +L  CA+L  LD G  +H  + R S  +D    +AL+ MY KCG LD A +VF
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
              + K++  WN+MI G A HG  + A+ +F  M+   M PD IT+   L+AC++ G + 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +    M     I P  EHY C+VDLLGR+G + EA ++I +MP+EP+A +W AL+GA
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H   E  E   K LLE+EP N               R +D +KMRK +  R +  +P
Sbjct: 512 CRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSP 571

Query: 521 GSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           G S I+ +  +H F +GD  +HP+   I  +L+K+   L   GYS + S VL DIDEE+K
Sbjct: 572 GCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQK 631

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
             + +YHSE+ A+A+G +    G  IRV+KNLRVC DCHSA KLI+K+  R+II+RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANR 691

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 149/314 (47%), Gaps = 46/314 (14%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G VN+AR++ D+    DV+ W A++ GY + G I  A+ LF     +N  S+ AMISG+A
Sbjct: 157 GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G    ARKLF  M +++E++W+A++ GY + G+ ++A E+FN M    +         
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV--------- 267

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
             AAC                             A++  + + G +D A  VFE M  ++
Sbjct: 268 --AAC----------------------------NAMMVGFGQRGMVDAAKTVFEKMCERD 297

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             TW+AMI     +    +A+  F +M    +RP+  +   +L+ CA   ++D G +   
Sbjct: 298 DGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGE 480
            M +    D +V     ++ +  + G L +A+ V  +   EP +  +W +++    +HG 
Sbjct: 358 AMLRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHG- 413

Query: 481 VEFGERLGKILLEM 494
              GE+   I  +M
Sbjct: 414 --LGEQALGIFHDM 425



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 63/318 (19%)

Query: 188 RQILDDGSKS--------DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239
           RQ L D + +         V+ + +L+ GY++ G +  A  LF+   ++N  SY  ++ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
               GR  EAR+LF+EM D+D + W+A++ GY + G   EA  +F+EM      P++ V+
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM------PKRNVV 206

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           S                W                 TA++  YA+ G +++A K+FE M  
Sbjct: 207 S----------------W-----------------TAMISGYAQNGEVNLARKLFEVMPE 233

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC--VLSACAHAGMIDRGL 417
           +   +W AM+ G    G  +DA ELF  M      P+    AC  ++      GM+D   
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVD--- 284

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGA 474
            A T  ++M   D     +  ++    +  +L EA      M    + PN     ++L  
Sbjct: 285 AAKTVFEKMCERDDGT--WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342

Query: 475 CRKHGEVEFGERLGKILL 492
           C     +++G  +   +L
Sbjct: 343 CAALAVLDYGREVHAAML 360



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 32/288 (11%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NA I    + G+IEGA+  F++   + T SYNA+++G+ R    + A  LF  M  +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 TWSAIIDGYTKDGYYKEAL-EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +++A+I G +     ++ L +    +      P     + +L      G L   I +   
Sbjct: 81  SYNALISGLS---LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 322 V-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           + +RN +    +LG  L+D     GR++ A ++F++M  ++V  W AM+ G    GR  +
Sbjct: 138 MPERNHVSYTVLLG-GLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A  LF +M +  +    +++  ++S  A  G ++         ++++ + PE        
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA-------RKLFEVMPERNEVSWTA 241

Query: 441 DLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            L+G  +AG++ +A E+ ++MP  P AA    ++G         FG+R
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG---------FGQR 280



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 129/294 (43%), Gaps = 25/294 (8%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQD----------HYVSGTLVKCHANSRFS 81
           + + +++  +   SW  +   +   +++GH +D          H V+          +  
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGY---IQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             + A  VF  + + +   W+++++A  ++      +S + EM+    +PN  +  ++  
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
            C+       G +VHA +++     DV   S+ I MY   G ++KA+++       D++ 
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WN++I GY + G  E A  +F   +      +  +Y   ++  +  G+ +E R++FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
               I      +S ++D   + G  +EA ++   M    ++P   +   ++ AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/653 (33%), Positives = 352/653 (53%), Gaps = 81/653 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHAN--SRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           Q HA  LKSG      VS  LV  ++   S  S    A KVF+ + + +   W +++   
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGY 229

Query: 109 LEH-------------NEPWRVIS------------LYSE-------MVGVDSKPNKFTY 136
           +++             +E  ++++            LY E       MV    + ++FTY
Sbjct: 230 VKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           P+V +AC+     + G QVHA+V++                              D    
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRRE----------------------------DFSFH 321

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
            D    N+L+  Y KCG    A+ +F+    K+  S+NA++SG+   G   EA+ +F EM
Sbjct: 322 FD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
            +K+ ++W  +I G  ++G+ +E L++F+ M+R+  +P  +  S  + +CA LGA   G 
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
             H  + +         G AL+ MYAKCG ++ A +VF  M   +  +WNA+I  L  HG
Sbjct: 438 QFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHG 497

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +A++++ +M ++ +RPDRITF  VL+AC+HAG++D+G +    M+ +Y I P  +HY
Sbjct: 498 HGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHY 557

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG------------ 484
             ++DLL R+G  +EAE +I S+P +P A +WEALL  CR HG +E G            
Sbjct: 558 ARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIP 617

Query: 485 ERLGKILL--EMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
           E  G  +L   M     + ++VA++RKLM++RG+K     S I++   +H F   D SHP
Sbjct: 618 EHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHP 677

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE-EKETAPKYHSEKLAIAFGFINTDP 601
           + + +Y  L+ + ++++  GY P++S VL D++ +  KE     HSEK+A+AFG +   P
Sbjct: 678 EAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPP 737

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G TIR+ KNLR C DCH+  + +SKV +RDII+RDR R+HHFRNG+CSC +FW
Sbjct: 738 GTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 194/441 (43%), Gaps = 81/441 (18%)

Query: 82  NFELALKVF--NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           +  LA  VF    V   +  ++N+++     +N+ +  I+L+ +M     KP+ FTY +V
Sbjct: 95  DIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASV 154

Query: 140 FKACS-ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY----ACFGCVNKARQILDDG 194
               + + + +K+ VQ HA  +K+G      V ++ + +Y    +    ++ AR++ DD 
Sbjct: 155 LAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDI 214

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG--SYNAMISGFARFGRFEEARKL 252
            + D   W  ++ GY+K G  +  KEL K   D+N    +YNAMISG+   G ++E    
Sbjct: 215 PEKDERSWTTMMTGYVKNGCFDLGKELLKGM-DENMKLVAYNAMISGYVNCGLYQE---- 269

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
                                      ALE+   M    I+  +F    V+ ACA+   L
Sbjct: 270 ---------------------------ALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302

Query: 313 DQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA-- 367
             G  +H +V R    S   D     +LV +Y KCG+ + A  +FE M  K++ +WNA  
Sbjct: 303 QLGKQVHAYVLRREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALL 358

Query: 368 -----------------------------MIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
                                        MI GLA +G  ++ ++LF  M+RE   P   
Sbjct: 359 SGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY 418

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            F+  + +CA  G    G Q    + ++ G D  +     ++ +  + G + EA++V  +
Sbjct: 419 AFSGAIKSCAVLGAYCNGQQFHAQLVKI-GFDSSLSAGNALITMYAKCGVVEEAQQVFRT 477

Query: 459 MPMEPNAAVWEALLGACRKHG 479
           MP   ++  W AL+ A  +HG
Sbjct: 478 MPC-LDSVSWNALIAALGQHG 497



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 73/366 (19%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH +++  G     H+ +  I +Y     ++ ARQ+ D+ S+ D I    ++ GY   GD
Sbjct: 36  VHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 215 IEGAKELFKST--KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           I  A+ +F+ T    ++T  YNAMI+GF+                             + 
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFS-----------------------------HN 126

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA-SLGALDQGIWIHDHVKRNSICVDA 331
            DGY   A+ +F +M+ +  KP  F  + VLA  A  +    Q +  H    ++      
Sbjct: 127 NDGY--SAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVT 184

Query: 332 VLGTALVDMYAKCGR----LDMAWKVFEDMKMKEVFTW---------------------- 365
            +  ALV +Y++C      L  A KVF+D+  K+  +W                      
Sbjct: 185 SVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKG 244

Query: 366 ----------NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
                     NAMI G    G   +A+E+  +M    +  D  T+  V+ ACA+A ++  
Sbjct: 245 MDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQL 304

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G Q   Y+ +    D        +V L  + G   EA  +   MP + +   W ALL   
Sbjct: 305 GKQVHAYVLRRE--DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSGY 361

Query: 476 RKHGEV 481
              G +
Sbjct: 362 VSSGHI 367



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 19/208 (9%)

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            +P   +L+ ++        LD    + D +       D +  T +V  Y   G + +A 
Sbjct: 45  FQPHAHILNRLIDVYCKSSELDYARQLFDEISEP----DKIARTTMVSGYCASGDIALAR 100

Query: 352 KVFED--MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
            VFE+  + M++   +NAMI G + +     AI LF KM+ E  +PD  T+A VL+  A 
Sbjct: 101 SVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLAL 160

Query: 410 AGMIDRGLQALTY----MQQMYGIDPEVEHYGCIVDLLGRAG----YLAEAEEVISSMPM 461
             ++D   Q + +    ++   G    V +   +V +  R       L  A +V   +P 
Sbjct: 161 --VVDDEKQCVQFHAAALKSGAGYVTSVSN--ALVSVYSRCASSPSLLHSARKVFDDIP- 215

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGK 489
           E +   W  ++    K+G  + G+ L K
Sbjct: 216 EKDERSWTTMMTGYVKNGCFDLGKELLK 243


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 343/622 (55%), Gaps = 52/622 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
            +H + L   + Q  +++  L++ +   +      A ++F S+   NV  W +V  A   
Sbjct: 83  HSHILSLPHSNSQPPFLANLLIEMYG--KCGRLPYARELFESMPSRNVHTW-TVAMAAFS 139

Query: 111 HNE-PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK--EGVQVHAHVVKNGLCGD 167
           HN      +  +  M     +P++ T+  +  A +   A    +G ++H +   +GL  +
Sbjct: 140 HNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPN 199

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           V V ++ I MY                                KCG ++ A+  F+  + 
Sbjct: 200 VVVGTAVISMYG-------------------------------KCGRLDDARAAFEELQW 228

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           KN+ ++NAM++ +   GR  EA +LF EM+D D + W+A+I  Y + G  K+AL+++  M
Sbjct: 229 KNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSM 288

Query: 288 Q-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
                + P++     V+  CA L AL QG  IH  V+  +   + ++  ALV MY KCG 
Sbjct: 289 HDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGC 348

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           LD A  VF  MK+K+  +WN +I   A HG +D A+ L+ +M  + ++P  +TF  +LSA
Sbjct: 349 LDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSA 408

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H G++  GL     MQ  + I P V H+GCI+DLLGR G LAEAE V+ SMP++ NA 
Sbjct: 409 CSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAV 468

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
            W +LLGAC+ HG+++ G R    +++  P                 R  DV K+RK+M 
Sbjct: 469 QWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMA 528

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
            RG+K +PG S I++  V+HEF +GD SHPQ +EIY+ L K++E++K  GY P++S V  
Sbjct: 529 ARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFH 588

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           D++EEEKE     HSEKLAI +G +     + +R++KNLRVC DCH+ATK +S++  R I
Sbjct: 589 DLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKI 648

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           +VRD  R+H F NG CSC D+W
Sbjct: 649 VVRDAARFHLFENGSCSCRDYW 670



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 300 SCVLAACASLGALDQGIWIHDHVKR--NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           + ++  C +  A+     +H H+    +S      L   L++MY KCGRL  A ++FE M
Sbjct: 64  AALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESM 123

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL--SACAHAGMIDR 415
             + V TW   +   + +G   +A+  F +M +   RPDR+TF+ +L   A   A  ID+
Sbjct: 124 PSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQ 183

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           G +   Y  ++ G+ P V     ++ + G+ G L +A      +  + N+  W A++
Sbjct: 184 GREIHRY-ARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK-NSVTWNAMM 238


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/734 (33%), Positives = 373/734 (50%), Gaps = 114/734 (15%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           T  F  K   +I + +C  S       HAV+  SG   + +V   LV  +   R   +E 
Sbjct: 128 TFPFVLKACGEIPSFRCGAS------VHAVVFASGFEWNVFVGNGLVSMYG--RCGAWEN 179

Query: 86  ALKVFNSVHKPNV---FVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFK 141
           A +VF+ + +  V     WNS++ A ++  +  R + ++  M   +  +P+  +   V  
Sbjct: 180 ARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLP 239

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV-- 199
           AC+   A   G QVH + +++GL  DV V ++ + MYA  G + +A ++ +     DV  
Sbjct: 240 ACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVS 299

Query: 200 ---------------------------------ICWNALIDGYLKCGDIEGAKELFKSTK 226
                                            + W+A+I GY + G    A ++F+  +
Sbjct: 300 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359

Query: 227 ----DKNTGSYNAMISGFARFGRF------------------------------------ 246
               + N  +  +++SG A  G                                      
Sbjct: 360 LCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMY 419

Query: 247 ------EEARKLFNEMNDKDE--ITWSAIIDGYTKDGYYKEALEVFNEM-QRDK-IKPRK 296
                 + AR +F+ +  KD   +TW+ +I G  + G   EALE+F++M Q D  + P  
Sbjct: 420 SKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNA 479

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA--LVDMYAKCGRLDMAWKVF 354
           F +SC L ACA LGAL  G  IH +V RN     A+L  A  L+DMY+K G +D A  VF
Sbjct: 480 FTISCALMACARLGALRFGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVF 538

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           ++M  +   +W +++ G  MHGR ++A+++F++MQ+  + PD +TF  VL AC+H+GM+D
Sbjct: 539 DNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVD 598

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           +G+     M + +G+ P  EHY C+VDLL RAG L EA E+I  MPM+P  AVW ALL A
Sbjct: 599 QGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 658

Query: 475 CRKHGEVEFGERLGKILLEMEP-------------QNRRC-DDVAKMRKLMKERGIKTNP 520
           CR +  VE GE     LLE+E               N RC  DVA++R LMK  GIK  P
Sbjct: 659 CRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRP 718

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G S +        F  GD SHP  ++IY +L+ +++++K  GY P++   L D+D+EEK 
Sbjct: 719 GCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKG 778

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSEKLA+A+G + T PGA IR+ KNLR C DCHSA   IS + + +IIVRD  R+
Sbjct: 779 DLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRF 838

Query: 641 HHFRNGKCSCNDFW 654
           HHF+NG CSC  +W
Sbjct: 839 HHFKNGSCSCRGYW 852



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 245/576 (42%), Gaps = 108/576 (18%)

Query: 15  KPEEISATNIPTSEFSQKTILDILNTKCHT--SWQHLKQAHAVILKSG--HFQDHYVSGT 70
           KP  +  T    S  S  T  D+ +T  H   S    +  H  +L  G  H   H +S  
Sbjct: 11  KPPLLFLTTFFFSTASSTT--DLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMY 68

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
           L        F++   AL V   +H  +  VF WN ++R  +       V+ LY  M  + 
Sbjct: 69  LT-------FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 121

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
            +P+ +T+P V KAC    + + G  VHA V  +G   +V V +  + MY   G    AR
Sbjct: 122 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 189 QILDDGSK---SDVICWNALIDGYLKCGDIEGAKELFKS--------------------- 224
           Q+ D+  +    D++ WN+++  Y++ GD   A ++F+                      
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 225 ------TKDKNTGSY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
                 ++ K    Y             NA++  +A+ G  EEA K+F  M  KD ++W+
Sbjct: 242 ASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWN 301

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKI--------------------------------- 292
           A++ GY++ G + +AL +F +++ +KI                                 
Sbjct: 302 AMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLC 361

Query: 293 --KPRKFVLSCVLAACASLGALDQGIWIHDH-------VKRNSICVDAVLGTALVDMYAK 343
             +P    L  +L+ CA  G L  G   H H       +  N    D ++  AL+DMY+K
Sbjct: 362 GSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSK 421

Query: 344 CGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQREK--MRPDRIT 399
           C     A  +F+ +  K+  V TW  +IGG A HG A++A+ELF +M +    + P+  T
Sbjct: 422 CKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFT 481

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
            +C L ACA  G +  G Q   Y+ +       +    C++D+  ++G +  A  V  +M
Sbjct: 482 ISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 541

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
             + N   W +L+     HG    GE   +I  EM+
Sbjct: 542 -HQRNGVSWTSLMTGYGMHGR---GEEALQIFYEMQ 573


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 327/561 (58%), Gaps = 61/561 (10%)

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGC--VNKARQILDDGSKSDVICWNALIDGYL 210
           + +HA +++NG   D  +    ++  +C  C  ++ A +I       +V  + ALIDG++
Sbjct: 56  LPIHAQLIRNGHSQDPFMVFELLR--SCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 113

Query: 211 KCGDIEGAKELFK--------------STKDKNTGSYNAMISG----------------- 239
             G+   A +L+               ++  K  GS  A+  G                 
Sbjct: 114 SSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRL 173

Query: 240 --------FARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                   + + G   +AR++F EM +    KD + W+A+IDG+ ++     ALE F  M
Sbjct: 174 VRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM 233

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q + ++P +F + CVL+AC+ LGAL+ G W+H ++++  I ++  +G AL++MY++CG +
Sbjct: 234 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 293

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           D A  VF++MK ++V T+N MI GL+M+G++  AIELF  M   ++RP  +TF  VL+AC
Sbjct: 294 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 353

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H G++D G +    M + Y ++P++EHYGC+VDLLGR G L EA ++I +M M P+  +
Sbjct: 354 SHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIM 413

Query: 468 WEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLMKE 513
              LL AC+ H  +E GE++ K              +L  +   + +  + A++R  MKE
Sbjct: 414 LGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 473

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD 573
            G++  PG S I+VN  IHEF  GD  HPQ + IY  L+++   L++EGY P    VL D
Sbjct: 474 AGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQD 533

Query: 574 IDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           I++ EKE A   HSE+LAI +G I+T+P   IRV+KNLRVC DCHSA KLI+K+ +R I+
Sbjct: 534 IEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIV 593

Query: 634 VRDRVRYHHFRNGKCSCNDFW 654
           VRDR R+H+F NG CSC D+W
Sbjct: 594 VRDRNRFHYFENGACSCGDYW 614



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 15/268 (5%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W +++   + + E  R +  +  M G + +PN+FT   V  ACS   A + G  VH+++ 
Sbjct: 210 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 269

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K  +  ++ V ++ I MY+  G +++A+ + D+    DVI +N +I G    G    A E
Sbjct: 270 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 329

Query: 221 LFKSTKDKNTGSYNAMI---------SGFARFGRFEEARKLFNEMNDKDEIT-WSAIIDG 270
           LF+    +     N             G   FG FE    +  +   + +I  +  ++D 
Sbjct: 330 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG-FEIFHSMARDYRVEPQIEHYGCMVDL 388

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             + G  +EA ++   M   K+ P   +L  +L+AC     L+ G  +   ++      D
Sbjct: 389 LGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQ-AD 444

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           +     L  +YA  G+   A +V   MK
Sbjct: 445 SGTYVLLSHVYASSGKWKEAAQVRAKMK 472


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 333/622 (53%), Gaps = 87/622 (13%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA--- 107
           + H  I+KS    D     TL+     +   +   A  VF+ +  P+   +N+++R+   
Sbjct: 6   RLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR 65

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
               +  +   S+ S  + +D+    FT+P V KACS  + +   + +H+ +VK GL   
Sbjct: 66  FFPSHSLFYFFSMRSNGIPLDN----FTFPFVLKACSRLQIN---LHLHSLIVKYGL--- 115

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                                        SD+   NALI  Y  CG +E           
Sbjct: 116 ----------------------------DSDIFVQNALICVYGYCGSLE----------- 136

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                                A K+F+EM+++D ++WS +I  +  +GY  EAL++F +M
Sbjct: 137 --------------------MAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKM 176

Query: 288 Q-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           Q  DK+ P +  +  V++A + LG L+ G W+   + R  + V   LGTAL+DM+++CG 
Sbjct: 177 QLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGS 236

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D +  VFE M ++ V TW A+I GL +HGR+ +A+ +F  M++  ++PD +TF+ VL A
Sbjct: 237 IDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVA 296

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H G++  G      ++++Y +DP ++HYGC+VD+LGRAG L EA + +  MPM+PN+ 
Sbjct: 297 CSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSI 356

Query: 467 VWEALLGACRKHGEVEFGERL-GKILLEMEPQN-------------RRCDDVAKMRKLMK 512
           +W  LLGAC  H  +   E++  KI      QN              R  + A +R  M+
Sbjct: 357 IWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMR 416

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           E+ I   PG S I+V+  IHEF +GD SHPQ ++I   L  II  L+  GY   +  VL 
Sbjct: 417 EKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLH 476

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           DI+EEE+E +  YHSEKLA+AF  ++     TIR++KNLR+C DCHS  K IS  F+R I
Sbjct: 477 DIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKI 536

Query: 633 IVRDRVRYHHFRNGKCSCNDFW 654
           I+RDR R+HHF  G CSC+D+W
Sbjct: 537 IIRDRNRFHHFEKGLCSCHDYW 558


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/583 (34%), Positives = 320/583 (54%), Gaps = 41/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  VF  V      VWN+++   +          L+  MV      ++FT+ +V  AC+ 
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G  VH  + +        ++ + +   A    VN                 NAL
Sbjct: 307 AGFFAHGKSVHGQITR--------LQPNFVPEAAL--PVN-----------------NAL 339

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           +  Y KCG+I  A+ +F + K K+  S+N ++SG+      ++A ++F EM  K+E++W 
Sbjct: 340 VTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWM 399

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            ++ GY   G+ ++AL++FN M+ + +KP  +  +  ++AC  LG+L  G  +H H+ + 
Sbjct: 400 VMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQL 459

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
                   G AL+ MYA+CG +  A  +F  M   +  +WNAMI  L  HG   +A+ELF
Sbjct: 460 GFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELF 519

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M  E + PDRI+F  VL+AC H+G++D G Q    M++ +GI P  +HY  ++DLLGR
Sbjct: 520 DRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGR 579

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
           AG + EA ++I +MP EP  ++WEA+L  CR  G++E G      L +M PQ+       
Sbjct: 580 AGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILL 639

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   R  D A++RKLM++RG+K  PG S I+    +H F  GD  HP+  ++Y  L
Sbjct: 640 SNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFL 699

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           + +  +++  GY P++  VL D++  +KE     HSE+LA+ FG +   PGAT+ V+KNL
Sbjct: 700 EMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNL 759

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C+DCH+    +SK   R+I+VRD  R+HHF++G+CSC ++W
Sbjct: 760 RICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 160/335 (47%), Gaps = 40/335 (11%)

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG---AKELFKSTKDKNTGSYNAMISG 239
           C      +L  G+   +   NAL+  Y+KC  +E    A+++     DK+  ++  M+ G
Sbjct: 178 CAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVG 237

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G    AR +F E++ K ++ W+A+I GY   G   EA E+F  M  +++   +F  
Sbjct: 238 YVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTF 297

Query: 300 SCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL--GTALVDMYAKCGRLDMAWKVFE 355
           + VL+ACA+ G    G  +H  + R   +   +A L    ALV +Y+KCG + +A ++F+
Sbjct: 298 TSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFD 357

Query: 356 DMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIEL 384
           +MK K+V +WN                                M+ G    G ++DA++L
Sbjct: 358 NMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKL 417

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E ++P   T+A  +SAC   G +  G Q   ++ Q+ G +        ++ +  
Sbjct: 418 FNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQL-GFEGSNSAGNALITMYA 476

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           R G + EA  +   MP   ++  W A++ A  +HG
Sbjct: 477 RCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHG 510



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 156/388 (40%), Gaps = 62/388 (15%)

Query: 24  IPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYV-------SGTLVKC 74
           +P  EF+  ++L    + C  +  + H K  H  I +    Q ++V       +  LV  
Sbjct: 290 VPLDEFTFTSVL----SACANAGFFAHGKSVHGQITR---LQPNFVPEAALPVNNALVTL 342

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLR-----ACLEH-----------NE-PWRV 117
           +  S+  N  +A ++F+++   +V  WN++L      +CL+            NE  W V
Sbjct: 343 Y--SKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMV 400

Query: 118 --------------ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
                         + L++ M   D KP  +TY     AC    + K G Q+H H+V+ G
Sbjct: 401 MVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLG 460

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
             G     ++ I MYA  G V +A  +       D + WNA+I    + G    A ELF 
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFD 520

Query: 224 STKDKNTG----SYNAMISGFARFGRFEEARKLFNEMND-----KDEITWSAIIDGYTKD 274
               +       S+  +++     G  +E  + F  M         E  ++ +ID   + 
Sbjct: 521 RMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRA 580

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   EA ++   M     +P   +   +L+ C + G ++ G    D + + +   D    
Sbjct: 581 GRIGEARDLIKTM---PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY- 636

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEV 362
             L + Y+  GR   A +V + M+ + V
Sbjct: 637 ILLSNTYSAAGRWVDAARVRKLMRDRGV 664



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           V  T+LV  YA  GRL  A   F+ +    ++    NA+I   A    A  A+ +F  + 
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 390 RE-KMRPDRITFACVLSACAH 409
               +RPD  +F  +LSA  H
Sbjct: 149 ASGSLRPDDYSFTALLSAAGH 169


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 313/589 (53%), Gaps = 79/589 (13%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVF 140
           NFE A  +F+ +   + F W +++  C++HN P   + LY  M   D SK NK T  +  
Sbjct: 199 NFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSAL 258

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
            A +   +   G ++H H+++ GL                                SD +
Sbjct: 259 AASAAIPSLHMGKKIHGHIMRMGL-------------------------------DSDEV 287

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
            W +L+D Y KCG IE                               EAR +F++M ++D
Sbjct: 288 VWCSLLDMYGKCGSIE-------------------------------EARYIFDKMEERD 316

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++W+ +I  Y K+G  +E   +F  +    I P  F  + VL ACA L A D G  IH 
Sbjct: 317 VVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHA 376

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           ++ R      +   +ALV MY+KCG ++ A  VFE +   ++F+W +++ G A HG+ D 
Sbjct: 377 YMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDK 436

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+  F  + +   +PD I F  VLSACAHAG++D+GL+    +++ +G+   ++HY CI+
Sbjct: 437 ALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACII 496

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLL RAG   EAE +I+ MP++P+  +W ALLG CR HG +E  +R  K L E+EP+N  
Sbjct: 497 DLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPA 556

Query: 499 -------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         R ++ A +R+ M  RGI   PG S I++   +H F  GD SHP+ K
Sbjct: 557 TYVTLANIYASAGMRAEE-ANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSK 615

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           EI   L ++ +++K  GY P+++ VL D++ E+KE    YHSEKLA+AFG I+T  G  I
Sbjct: 616 EILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPI 675

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +V KNLR C DCH+A K IS +  R IIVRD  R+H F  G CSC D+W
Sbjct: 676 KVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 35/365 (9%)

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           KP    Y T+ K C    A KEG QVHAH+  +G  G                       
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIG----------------------- 152

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                    +   N L+D Y KCG +  A+++F     ++  S+N MISG+ + G FE+A
Sbjct: 153 ---------LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKA 203

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACAS 308
           R LF++M ++D  +W+AII G  +    +EALE++  MQ+ D  K  K  +S  LAA A+
Sbjct: 204 RNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAA 263

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           + +L  G  IH H+ R  +  D V+  +L+DMY KCG ++ A  +F+ M+ ++V +W  M
Sbjct: 264 IPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTM 323

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I     +GR ++   LF  +    + P+  TFA VL+ACA     D G Q   YM ++ G
Sbjct: 324 IHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV-G 382

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
            D        +V +  + G +  A+ V   +P +P+   W +LL    +HG+ +      
Sbjct: 383 FDSFSSAASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKALHFF 441

Query: 489 KILLE 493
           ++LL+
Sbjct: 442 ELLLK 446



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 131/273 (47%), Gaps = 14/273 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  I++ G   D  V  +L+  +   +  + E A  +F+ + + +V  W +++   L
Sbjct: 271 KKIHGHIMRMGLDSDEVVWCSLLDMYG--KCGSIEEARYIFDKMEERDVVSWTTMIHTYL 328

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++       +L+  ++  +  PN FT+  V  AC+   A+  G Q+HA++V+ G      
Sbjct: 329 KNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSS 388

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
             S+ + MY+  G +  A+ + +   + D+  W +L+ GY + G  + A   F    KS 
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSG 448

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              +  ++  ++S  A  G  ++  + F+ + +K  +T     ++ IID   + G + EA
Sbjct: 449 TKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEA 508

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             + NEM    IKP K++ + +L  C   G L+
Sbjct: 509 ESIINEM---PIKPDKYIWAALLGGCRIHGNLE 538


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/443 (42%), Positives = 273/443 (61%), Gaps = 23/443 (5%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK---------DGYYKEALEVFN 285
           A++  FAR GR    R++F+ +   D   W+A++  Y +                LE+F 
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M    I+P +  L  V+ AC  LGA+  G+W H +  +  + V+ ++ TALV+MYA CG
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 282

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RLD+A +VF     ++   +NAM+ GLA+HG    A+ L  +M    +  D +T   V+ 
Sbjct: 283 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 342

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG++D GL     M+  +GI+P +EHYGC++D+L RAG L  AE++I  M + PNA
Sbjct: 343 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNA 402

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLM 511
           A++ +L+ AC  HG++E GE++   L+ +EP              +  R +D  K RK M
Sbjct: 403 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 462

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K  GI  NPGSS++D+NGV+HEF  GD +HP  KEIY M+++I  +L   G   ++S  L
Sbjct: 463 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 522

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD++EE+K     YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH + KL+S+V+ R+
Sbjct: 523 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 582

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I++RDR R+HHFR+G CSC DFW
Sbjct: 583 IVMRDRTRFHHFRDGVCSCGDFW 605



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 21/246 (8%)

Query: 88  KVFNSVHKPNVFVWNSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +VF+ +  P++  WN++L A             +    ++ L+  M+ +  +PN+ T   
Sbjct: 179 RVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVA 238

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV  H + VK  L  +  V ++ ++MYA  G ++ A Q+    S  D
Sbjct: 239 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRD 298

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
             C+NA++ G    G    A  L              +  +++   A  G  +E    F+
Sbjct: 299 TRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 358

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  I      +  +ID  ++ G    A ++ +EM    I P   +   ++ AC   
Sbjct: 359 RMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEML---IVPNAAIYRSLIRACGIH 415

Query: 310 GALDQG 315
           G L+ G
Sbjct: 416 GKLELG 421



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA-MHGR--------ADD 380
           D VLG AL+ ++A+CGR+    +VF+ +   ++  WNA++   A +  R        AD 
Sbjct: 157 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADA 216

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCI 439
            +ELF +M    + P+ IT   V+ AC   G +  G+ A TY +++   ++  V     +
Sbjct: 217 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA--TAL 274

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           V++    G L  AE+V ++   + +   + A+L     HG
Sbjct: 275 VEMYAGCGRLDLAEQVFAAAS-DRDTRCYNAMLHGLAVHG 313


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/647 (34%), Positives = 342/647 (52%), Gaps = 81/647 (12%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F+ + + ++  W  ++    E  +    + L+ +M      P+K    TV  AC+   A
Sbjct: 215 LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 274

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
             +   +  ++ +     DV + ++ I MYA  GCV  AR+I D   + +VI W+A+I  
Sbjct: 275 MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAA 334

Query: 209 YLKCGDIEGAKELFKSTKD---------------------------------------KN 229
           Y   G    A +LF+                                           +N
Sbjct: 335 YGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQN 394

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY------------ 277
               N ++  ++ +   ++A  LF+ M  +D ++WS ++ G+ K G Y            
Sbjct: 395 LIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIR 454

Query: 278 ----------------KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
                            E+L +F++M+ + + P K  +  V+ ACA LGA+ +   I D+
Sbjct: 455 CGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 514

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           ++R    +D +LGTA++DM+AKCG ++ A ++F+ M+ K V +W+AMI     HG+   A
Sbjct: 515 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 574

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           ++LF  M R  + P++IT   +L AC+HAG+++ GL+  + M + Y +  +V+HY C+VD
Sbjct: 575 LDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVD 634

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-- 499
           LLGRAG L EA ++I SM +E +  +W A LGACR H +V   E+    LLE++PQN   
Sbjct: 635 LLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGH 694

Query: 500 ------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                       R +DVAK R LM +R +K  PG + I+V+   H+F  GD +HP+ KEI
Sbjct: 695 YILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEI 754

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y MLK +  KL++ GY P+++ VL D+DEE K      HSEKLAIAFG I T     IR+
Sbjct: 755 YEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRI 814

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IKNLRVC DCH+  KL+S +  R IIVRD  R+HHF+ G CSC D+W
Sbjct: 815 IKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 148/272 (54%), Gaps = 18/272 (6%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVHA    +G+  ++ V +  I  Y+ +  ++ A  + D     D + W+ ++ G+ K G
Sbjct: 99  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 158

Query: 214 DIEGA----KELFK--STKDKNTGSY------------NAMISGFARFGRFEEARKLFNE 255
           D        +EL +  +  D  T  +             A++  + +    E+AR LF++
Sbjct: 159 DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDK 218

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M ++D +TW+ +I GY + G   E+L +F +M+ + + P K  +  V+ ACA LGA+ + 
Sbjct: 219 MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA 278

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             I D+++R    +D +LGTA++DMYAKCG ++ A ++F+ M+ K V +W+AMI     H
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           G+   A++LF  M    M PD+IT A +L AC
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 125/567 (22%), Positives = 237/567 (41%), Gaps = 102/567 (17%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           + T+   T L  H + EE S  +       +  I  ++N +  T    ++Q HA     G
Sbjct: 52  IETQFRQTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLT---QVRQVHAQASVHG 108

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
             ++  V+  L+  +  S +   + A  +F+ +   +   W+ ++    +  +       
Sbjct: 109 MLENIVVANKLI--YFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGT 166

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           + E++   ++P+ +T P V +AC     D + +Q+ A V       D++VK   I+    
Sbjct: 167 FRELIRCGARPDNYTLPFVIRACR----DLKNLQM-ALV-------DMYVKCREIE---- 210

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---------- 230
                 AR + D   + D++ W  +I GY +CG    +  LF+  +++            
Sbjct: 211 -----DARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 265

Query: 231 -------GSYN----------------------AMISGFARFGRFEEARKLFNEMNDKDE 261
                  G+ +                      AMI  +A+ G  E AR++F+ M +K+ 
Sbjct: 266 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 325

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           I+WSA+I  Y   G  ++AL++F  M    + P K  L+ +L AC +   L Q   +H  
Sbjct: 326 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQ 385

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA-------- 373
              + +  + ++   LV  Y+    LD A+ +F+ M +++  +W+ M+GG A        
Sbjct: 386 ASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNC 445

Query: 374 --------------------MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
                                 G A++++ LF KM+ E + PD++    V+ ACA  G +
Sbjct: 446 FGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAM 505

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            +      Y+Q+      +V     ++D+  + G +  A E+   M  E N   W A++ 
Sbjct: 506 HKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIA 563

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRR 500
           A   HG+       G+  L++ P   R
Sbjct: 564 AYGYHGQ-------GRKALDLFPMMLR 583



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 96/204 (47%), Gaps = 8/204 (3%)

Query: 62  FQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
           FQ   + GT ++  HA  +    E A ++F+ + + NV  W++++ A   H +  + + L
Sbjct: 520 FQLDVILGTAMIDMHA--KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 577

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYA 179
           +  M+     PNK T  ++  ACS     +EG++  + + ++  +  DV   +  + +  
Sbjct: 578 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 637

Query: 180 CFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDI---EGAKELFKSTKDKNTGSYNA 235
             G +++A ++++  + + D   W A +       D+   E A       + +N G Y  
Sbjct: 638 RAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYIL 697

Query: 236 MISGFARFGRFEEARKLFNEMNDK 259
           + + +A  GR+E+  K  + M+ +
Sbjct: 698 LSNIYANAGRWEDVAKTRDLMSQR 721


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/630 (35%), Positives = 345/630 (54%), Gaps = 53/630 (8%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           H +  + K+ HA I+KSG  Q   +  TL+  +        + A  +F+ + + +   W 
Sbjct: 15  HQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNL--LQDAHYLFDEMPQRDHVSWA 72

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           S+L A  +   P + +S++  M   D  +P+ F Y T+ KAC+   + + G QVHA  V 
Sbjct: 73  SILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVL 132

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           +    D  VKSS + MYA                               KCG    A+ +
Sbjct: 133 SPFVDDDVVKSSLVDMYA-------------------------------KCGLPSIARSV 161

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           F S   K + S+ AM+SG+AR G  +EA +LF     ++  +W+A+I G  + GY  +  
Sbjct: 162 FDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGC 221

Query: 282 EVFNEMQR---DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            +F EM+R   D + P   VLS V+ ACA+L  L  G  IH  V  +       +  ALV
Sbjct: 222 YMFIEMRREGVDIVDP--LVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALV 279

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKC  +  A  VF  M  ++V +W ++I G A HGRA +A++L+ +M   +++P+ +
Sbjct: 280 DMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEV 339

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  ++ AC+HAG++ +G +    M + Y I P ++ + C +DLL R+G+L EAE++I +
Sbjct: 340 TFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKT 399

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM---EPQNR-----------RCDDV 504
           MP +P+   W ALL AC+ HG  E G R+   LL +   EP              + + +
Sbjct: 400 MPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQM 459

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           +++RKLM +  +K  PG S ID+      F  G+  HP   EI+ +LK++  +++  GY 
Sbjct: 460 SRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYI 519

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P++S VL D++E+EKE    +HSE+ A+A+G +   PG  IR++KNLR+C DCH+  KL 
Sbjct: 520 PDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLT 579

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           S +  ++IIVRD  RYHHF++G+CSCNDFW
Sbjct: 580 SSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 338/635 (53%), Gaps = 66/635 (10%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS--LYSEMVGVDSKPNKFTYPTVFKAC 143
           A  +F ++   ++  WN++L     H      ++  L  +M     +PN  T   +    
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 144 SITEADKEGVQVHAHVV----------KNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +   A  +G  VHA+ +          K+ L   V + ++ + MYA  G +  AR++ D 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFK------------------------------ 223
               + + W+ALI G++ C  +  A  LFK                              
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 224 ----------STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                     S    +  + N+++S +A+ G  ++A  LF+EM  KD +++SA++ GY +
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G  +EA  VF +MQ   ++P    +  ++ AC+ L AL  G   H  V    +  +  +
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 363

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             AL+DMYAKCGR+D++ +VF  M  +++ +WN MI G  +HG   +A  LF +M     
Sbjct: 364 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD +TF C+LSAC+H+G++  G      M   YG+ P +EHY C+VDLL R G+L EA 
Sbjct: 424 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAY 483

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E I SMP+  +  VW ALLGACR +  ++ G+++ +++ E+ P+                
Sbjct: 484 EFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R D+ A++R + K +G K +PG S I++NG +H F  GD SHPQ  EIY  L  I+  +K
Sbjct: 544 RFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIK 603

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P++S VL D++EEEKE A   HSEKLAIA+G ++     TI V KNLRVC DCH+
Sbjct: 604 KLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHT 663

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             K IS V +R IIVRD  R+HHF+NG+CSC DFW
Sbjct: 664 VIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 178/419 (42%), Gaps = 61/419 (14%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN +T+P   KACS       G  +H H +  GL  D+ V ++ + MY    C+  A  I
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------NTGSYNAMISGFARFG 244
                  D++ WNA++ GY   G    A     S + +      N  +  A++   A+ G
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 245 RFEE---------------------------------------------ARKLFNEMNDK 259
              +                                             AR++F+ M  +
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---IKPRKFVLSCVLAACASLGALDQGI 316
           +E+TWSA+I G+       +A  +F  M       + P    ++  L ACASL  L  G 
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGE 245

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            +H  + ++ +  D   G +L+ MYAK G +D A  +F++M +K+  +++A++ G   +G
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
           RA++A  +F KMQ   + PD  T   ++ AC+H   +  G  +   +  + G+  E    
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETSIC 364

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
             ++D+  + G +  + +V + MP   +   W  ++     HG    G+    + LEM 
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKEATALFLEMN 419



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M R ++ P  +     L AC++L     G  IH H     +  D  + TAL+DMY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE--LFFKMQREKMRPDRITFACVL 404
           L  A  +F  M  +++  WNAM+ G A HG    A+   L  +MQ  ++RP+  T   +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 405 SACAHAGMIDRGLQALTYM---------QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
              A  G + +G     Y               +   V     ++D+  + G L  A  V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 456 ISSMPMEPNAAVWEALLG 473
             +MP   N   W AL+G
Sbjct: 181 FDAMPAR-NEVTWSALIG 197



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 32/329 (9%)

Query: 44  TSWQHLK---QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
            S  HL+   Q HA++ KSG   D     +L+  +A +     + A+ +F+ +   +   
Sbjct: 236 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVS 293

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +++++   +++        ++ +M   + +P+  T  ++  ACS   A + G   H  V+
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
             GL  +  + ++ I MYA  G ++ +RQ+ +     D++ WN +I GY   G  + A  
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 221 LFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGY 271
           LF    +     +  ++  ++S  +  G   E +  F+ M     +T     +  ++D  
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 473

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           ++ G+  EA E    M    ++    V   +L AC     +D G  +   ++        
Sbjct: 474 SRGGFLDEAYEFIQSM---PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE------- 523

Query: 332 VLG-------TALVDMYAKCGRLDMAWKV 353
            LG         L ++Y+  GR D A +V
Sbjct: 524 -LGPEGTGNFVLLSNIYSAAGRFDEAAEV 551


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 358/665 (53%), Gaps = 72/665 (10%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRF----SNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
           ++K+GHF+    S   V C     F    ++FE A KVF+ + + NV  W  ++  C++ 
Sbjct: 192 LMKTGHFE----SDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
             P   I  + +MV    + +KFT  +VF AC+  E    G Q+H+  +++GL  DV  +
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--E 305

Query: 172 SSGIQMYA---CFGCVNKARQILDDGSKSDVICWNALIDGYLK----------------- 211
            S + MYA     G V+  R++ D      V+ W ALI GY+K                 
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365

Query: 212 -----------------CGDIEGAK-------ELFKSTKDKNTGSYNAMISGFARFGRFE 247
                            CG++   +       + FK     N+   N++IS F +  R E
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           +A++ F  +++K+ ++++  +DG  ++  +++A ++ +E+   ++    F  + +L+  A
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA 485

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           ++G++ +G  IH  V +  +  +  +  AL+ MY+KCG +D A +VF  M+ + V +W +
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI G A HG A   +E F +M  E ++P+ +T+  +LSAC+H G++  G +    M + +
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P++EHY C+VDLL RAG L +A E I++MP + +  VW   LGACR H   E G+  
Sbjct: 606 KIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA 665

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + +LE++P                 + ++  +MR+ MKER +    G S I+V   IH+
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHK 725

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK----YHSEK 589
           F  GD +HP   +IY  L ++I ++K  GY P++  VL  ++EE  E   +     HSEK
Sbjct: 726 FYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEK 785

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           +A+AFG I+T     +RV KNLRVC DCH+A K IS V  R+I++RD  R+HHF++GKCS
Sbjct: 786 IAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCS 845

Query: 650 CNDFW 654
           CND+W
Sbjct: 846 CNDYW 850



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 198/465 (42%), Gaps = 73/465 (15%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T+ ++ K+C      + G  VHA +++  +  D  + +S I +Y+  G   KA  + +  
Sbjct: 64  TFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM 123

Query: 195 ---SKSDVICWNALIDGYLKCG-DIEGAK---ELFKSTKDKNTGSYNAMI-----SGFAR 242
               K DV+ W+A++  Y   G +++  K   E  +     N   Y A+I     S F  
Sbjct: 124 RRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVG 183

Query: 243 FGR--------------------------------FEEARKLFNEMNDKDEITWSAIIDG 270
            GR                                FE A K+F++M++ + +TW+ +I  
Sbjct: 184 VGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITR 243

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             + G+ +EA+  F +M     +  KF LS V +ACA L  L  G  +H    R+ +  D
Sbjct: 244 CMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD 303

Query: 331 AVLGTALVDMYAKC---GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH-GRADDAIELFF 386
             +  +LVDMYAKC   G +D   KVF+ M+   V +W A+I G   +   A +AI LF 
Sbjct: 304 --VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFS 361

Query: 387 KM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           +M  +  + P+  TF+    AC +      G Q L    +  G+         ++ +  +
Sbjct: 362 EMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFVK 420

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           +  + +A+    S+  E N   +   L G CR    + F E+  K+L E+          
Sbjct: 421 SDRMEDAQRAFESLS-EKNLVSYNTFLDGTCRN---LNF-EQAFKLLSEITE-------- 467

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                  +E G+     +S++     +   R G+  H QV ++ L
Sbjct: 468 -------RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 200/476 (42%), Gaps = 49/476 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFS-NFELALKVFNSVHKPNVFVWNSVLRAC 108
           K  HA +++     D  +  +L+  ++ S  S   E   +      K +V  W++++ AC
Sbjct: 82  KLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMM-AC 140

Query: 109 LEHN-EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCG 166
             +N      I ++ E + +   PN + Y  V +ACS ++    G      ++K G    
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200

Query: 167 DVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL---- 221
           DV V  S I M+         A ++ D  S+ +V+ W  +I   ++ G    A       
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260

Query: 222 ----FKSTKDKNTGSYNA-----------------------------MISGFARF---GR 245
               F+S K   +  ++A                             ++  +A+    G 
Sbjct: 261 VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGS 320

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKD-GYYKEALEVFNEM-QRDKIKPRKFVLSCVL 303
            ++ RK+F+ M D   ++W+A+I GY K+     EA+ +F+EM  +  ++P  F  S   
Sbjct: 321 VDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAF 380

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC +L     G  +     +  +  ++ +  +++ M+ K  R++ A + FE +  K + 
Sbjct: 381 KACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLV 440

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           ++N  + G   +   + A +L  ++   ++     TFA +LS  A+ G I +G Q  + +
Sbjct: 441 SYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQV 500

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            ++ G+         ++ +  + G +  A  V + M    N   W +++    KHG
Sbjct: 501 VKL-GLSCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHG 554



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 18/251 (7%)

Query: 182 GCVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAK----ELFKSTKDKNTGSYNAM 236
           G V+    +  DG +  D + +++L+   ++  D    K     L +   + ++  YN++
Sbjct: 44  GAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSL 103

Query: 237 ISGFARFGRFEEARKLFNEM---NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           IS +++ G   +A  +F  M     +D ++WSA++  Y  +G   +A++VF E     + 
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 294 PRKFVLSCVLAACAS-----LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC-GRL 347
           P  +  + V+ AC++     +G +  G  +      + +CV    G +L+DM+ K     
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCV----GCSLIDMFVKGENSF 219

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           + A+KVF+ M    V TW  MI      G   +AI  F  M       D+ T + V SAC
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 408 AHAGMIDRGLQ 418
           A    +  G Q
Sbjct: 280 AELENLSLGKQ 290



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 8/211 (3%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFV-LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           G  + A+   + M RD I+P   V  S +L +C        G  +H  +    I  D+VL
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +L+ +Y+K G    A  VFE M+    ++V +W+AM+     +GR  DAI++F +   
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRA-GY 448
             + P+   +  V+ AC+++  +  G   L ++ +    + +V   GC ++D+  +    
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV-CVGCSLIDMFVKGENS 218

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              A +V   M  E N   W  ++  C + G
Sbjct: 219 FENAYKVFDKMS-ELNVVTWTLMITRCMQMG 248


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/663 (32%), Positives = 351/663 (52%), Gaps = 58/663 (8%)

Query: 50  KQAHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           K  HA  L      +H ++S      H   +     LA  +F+++   NV  WN ++   
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 109 LEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           L       V+ L+  MV + +  PN++ + T   ACS     KEG+Q H  + K GL   
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSK---SDVICWNALIDGYLKCGDIEGAKELFKS 224
            +VKS+ + MY+    V  A Q+LD       +D+  +N++++  ++ G  E A E+ + 
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRR 211

Query: 225 TKDKNTG----SY-----------------------------------NAMISGFARFGR 245
             D+       +Y                                   + +I  + + G 
Sbjct: 212 MVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGE 271

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
              AR +F+ + +++ + W+A++  Y ++GY++E+L +F  M R+   P ++  + +L A
Sbjct: 272 VLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNA 331

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA + AL  G  +H  V++       ++  AL++MY+K G +D ++ VF DM  +++ TW
Sbjct: 332 CAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITW 391

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NAMI G + HG    A+++F  M   +  P+ +TF  VLSA +H G++  G   L ++ +
Sbjct: 392 NAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMR 451

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            + I+P +EHY C+V LL RAG L EAE  + +  ++ +   W  LL AC  H   + G 
Sbjct: 452 NFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGR 511

Query: 486 RLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           R+ + +L+M+P +              RR D V  +RKLM+ER IK  PG+S +D+   I
Sbjct: 512 RIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDI 571

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F +   +HP+  +IY  +++++  +K  GY PN + VL D+++E+KE    YHSEKLA
Sbjct: 572 HVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLA 631

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +A+G +     A IR+IKNLR+C+DCH+A KLISKV  R IIVRD  R+HHFR+G C+C 
Sbjct: 632 LAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCL 691

Query: 652 DFW 654
           D W
Sbjct: 692 DHW 694


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/495 (40%), Positives = 293/495 (59%), Gaps = 15/495 (3%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I  YA  G VN AR++ +   + + + W A++ GY++ G +E A ELF +  +    + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           AM+ GF + G  + A+ +F +M ++D+ TWSA+I  Y ++ +  EAL  F EM    ++P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               +  +L  CA+L  LD G  +H  + R S  +D    +AL+ MY KCG LD A +VF
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
              + K++  WN+MI G A HG  + A+ +F  M+   M PD IT+   L+AC++ G + 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +    M     I P  EHY C+VDLLGR+G + EA ++I +MP+EP+A +W AL+GA
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H   E  E   K LLE+EP N               R +D +KMRK +  R +  +P
Sbjct: 512 CRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSP 571

Query: 521 GSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           G S I+ +  +H F +GD  +HP+   I  +L+K+   L   GYS + S VL DIDEE+K
Sbjct: 572 GCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQK 631

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
             + +YHSE+ A+A+G +    G  IRV+KNLRVC DCHSA KLI+K+  R+II+RD  R
Sbjct: 632 SHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANR 691

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC D+W
Sbjct: 692 FHHFKDGFCSCRDYW 706



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 153/330 (46%), Gaps = 46/330 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G VN+AR++ D+    DV+ W A++ GY + G I  A+ LF     +N  S+ AMISG+A
Sbjct: 157 GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G    ARKLF  M +++E++W+A++ GY + G+ ++A E+FN M    +         
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV--------- 267

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
             AAC                             A++  + + G +D A  VFE M  ++
Sbjct: 268 --AAC----------------------------NAMMVGFGQRGMVDAAKTVFEKMCERD 297

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             TW+AMI     +    +A+  F +M    +RP+  +   +L+ CA   ++D G +   
Sbjct: 298 DGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGE 480
            M +    D +V     ++ +  + G L +A+ V  +   EP +  +W +++    +HG 
Sbjct: 358 AMLRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQHG- 413

Query: 481 VEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
              GE+   I  +M       D +  +  L
Sbjct: 414 --LGEQALGIFHDMRLAGMSPDGITYIGAL 441



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 63/318 (19%)

Query: 188 RQILDDGSKS--------DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISG 239
           RQ L D + +         V+ + +L+ GY++ G +  A  LF+   ++N  SY  ++ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
               GR  EAR+LF+EM D+D + W+A++ GY + G   EA  +F+EM      P++ V+
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM------PKRNVV 206

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           S                W                 TA++  YA+ G +++A K+FE M  
Sbjct: 207 S----------------W-----------------TAMISGYAQNGEVNLARKLFEVMPE 233

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC--VLSACAHAGMIDRGL 417
           +   +W AM+ G    G  +DA ELF  M      P+    AC  ++      GM+D   
Sbjct: 234 RNEVSWTAMLVGYIQAGHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVD--- 284

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGA 474
            A T  ++M   D     +  ++    +  +L EA      M    + PN     ++L  
Sbjct: 285 AAKTVFEKMCERDDGT--WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342

Query: 475 CRKHGEVEFGERLGKILL 492
           C     +++G  +   +L
Sbjct: 343 CAALAVLDYGREVHAAML 360



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 32/288 (11%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           NA I    + G+IEGA+  F++   + T SYNA+++G+ R    + A  LF  M  +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 TWSAIIDGYTKDGYYKEAL-EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +++A+I G +     ++ L +    +      P     + +L      G L   I +   
Sbjct: 81  SYNALISGLS---LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 322 V-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           + +RN +    +LG  L+D     GR++ A ++F++M  ++V  W AM+ G    GR  +
Sbjct: 138 MPERNHVSYTVLLG-GLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A  LF +M +  +    +++  ++S  A  G ++         ++++ + PE        
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLA-------RKLFEVMPERNEVSWTA 241

Query: 441 DLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            L+G  +AG++ +A E+ ++MP  P AA    ++G         FG+R
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG---------FGQR 280



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 129/294 (43%), Gaps = 25/294 (8%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQD----------HYVSGTLVKCHANSRFS 81
           + + +++  +   SW  +   +   +++GH +D          H V+          +  
Sbjct: 225 RKLFEVMPERNEVSWTAMLVGY---IQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
             + A  VF  + + +   W+++++A  ++      +S + EM+    +PN  +  ++  
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
            C+       G +VHA +++     DV   S+ I MY   G ++KA+++       D++ 
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 202 WNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WN++I GY + G  E A  +F   +      +  +Y   ++  +  G+ +E R++FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
               I      +S ++D   + G  +EA ++   M    ++P   +   ++ AC
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM---PVEPDAVIWGALMGAC 512


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 338/635 (53%), Gaps = 66/635 (10%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS--LYSEMVGVDSKPNKFTYPTVFKAC 143
           A  +F ++   ++  WN++L     H      ++  L  +M     +PN  T   +    
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 238

Query: 144 SITEADKEGVQVHAHVV----------KNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +   A  +G  VHA+ +          K+ L   V + ++ + MYA  G +  AR++ D 
Sbjct: 239 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFK------------------------------ 223
               + + W+ALI G++ C  +  A  LFK                              
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 224 ----------STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                     S    +  + N+++S +A+ G  ++A  LF+EM  KD +++SA++ GY +
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G  +EA  VF +MQ   ++P    +  ++ AC+ L AL  G   H  V    +  +  +
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             AL+DMYAKCGR+D++ +VF  M  +++ +WN MI G  +HG   +A  LF +M     
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD +TF C+LSAC+H+G++  G      M   YG+ P +EHY C+VDLL R G+L EA 
Sbjct: 539 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAY 598

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E I SMP+  +  VW ALLGACR +  ++ G+++ +++ E+ P+                
Sbjct: 599 EFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R D+ A++R + K +G K +PG S I++NG +H F  GD SHPQ  EIY  L  I+  +K
Sbjct: 659 RFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIK 718

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P++S VL D++EEEKE A   HSEKLAIA+G ++     TI V KNLRVC DCH+
Sbjct: 719 KLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHT 778

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             K IS V +R IIVRD  R+HHF+NG+CSC DFW
Sbjct: 779 VIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 205/489 (41%), Gaps = 77/489 (15%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV---ISL 120
           DH  SG L + H             +F+ +  P+V  +N ++RA    + P      + L
Sbjct: 66  DHIASGHLSRAH------------HLFDQIPSPDVRTYNDLIRA-YSSSSPTAAADGLHL 112

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y  M+     PN +T+P   KACS       G  +H H +  GL  D+ V ++ + MY  
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------NTGSYN 234
             C+  A  I       D++ WNA++ GY   G    A     S + +      N  +  
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232

Query: 235 AMISGFARFGRFEE---------------------------------------------A 249
           A++   A+ G   +                                             A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---IKPRKFVLSCVLAAC 306
           R++F+ M  ++E+TWSA+I G+       +A  +F  M       + P    ++  L AC
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRAC 350

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           ASL  L  G  +H  + ++ +  D   G +L+ MYAK G +D A  +F++M +K+  +++
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           A++ G   +GRA++A  +F KMQ   + PD  T   ++ AC+H   +  G  +   +  +
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-II 469

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            G+  E      ++D+  + G +  + +V + MP   +   W  ++     HG    G+ 
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKE 525

Query: 487 LGKILLEME 495
              + LEM 
Sbjct: 526 ATALFLEMN 534



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 32/329 (9%)

Query: 44  TSWQHLK---QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
            S  HL+   Q HA++ KSG   D     +L+  +A +     + A+ +F+ +   +   
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVS 408

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +++++   +++        ++ +M   + +P+  T  ++  ACS   A + G   H  V+
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
             GL  +  + ++ I MYA  G ++ +RQ+ +     D++ WN +I GY   G  + A  
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 221 LFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGY 271
           LF    +     +  ++  ++S  +  G   E +  F+ M     +T     +  ++D  
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 588

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           ++ G+  EA E    M    ++    V   +L AC     +D G  +   ++        
Sbjct: 589 SRGGFLDEAYEFIQSM---PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE------- 638

Query: 332 VLG-------TALVDMYAKCGRLDMAWKV 353
            LG         L ++Y+  GR D A +V
Sbjct: 639 -LGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/647 (34%), Positives = 340/647 (52%), Gaps = 77/647 (11%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +K+ H+  +++G F D +V   L+  +A  +  +   A+KVFN +   +V  WN+++  
Sbjct: 277 QIKEIHSYAIRNGTFADAFVCNALIDTYA--KCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +         L+  M                         KE + +           D
Sbjct: 335 YTQSGNFGAAFELFENM------------------------RKENIPL-----------D 359

Query: 168 VHVKSSGIQMYACFGCVNKA----RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           V   S+ I  YA  GC  +A    +Q++ DGS+ + +   +L+      G +    E+  
Sbjct: 360 VITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHA 419

Query: 224 STKDKNTGS----------------YNAMISGFARFGRFEEARKLFNEM--NDKDEITWS 265
            +  K   S                YNA+I  +++   F+ AR +F+ +   +++ +TW+
Sbjct: 420 YSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWT 479

Query: 266 AIIDGYTKDGYYKEALEVFNEM--QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
            +I GY + G   +AL++F+EM  +   + P  + +SC+L ACA L AL  G  IH +V 
Sbjct: 480 VMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVT 539

Query: 324 RNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           R+     +V  +   L+DMY+KCG +D A  VF+ M  +   +W +M+ G  MHGR  +A
Sbjct: 540 RHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA 599

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +++F KMQ+    PD I+F  +L AC+H+GM+D+GL     M++ Y +    EHY C++D
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVID 659

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--- 498
           LL R G L +A + I  MPMEP+A +W ALL ACR H  VE  E     L+ M+ +N   
Sbjct: 660 LLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGS 719

Query: 499 -----------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                      RR  DVA++R+LMK+ GIK  PG S +        F  GD SHP   EI
Sbjct: 720 YTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEI 779

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y +L+++I ++K+ GY P ++  L D+D+EEK      HSEKLA+A+G + T PG  IR+
Sbjct: 780 YSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRI 839

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLRVC DCHSA   ISK+   +IIVRD  R+HHF+NG CSC  +W
Sbjct: 840 TKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 160/381 (41%), Gaps = 76/381 (19%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL V   V       WN ++R  ++     R I +   M+   +KP+ FT P   KA   
Sbjct: 102 ALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKA--- 158

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                              CG++     G  ++    C         +G +S+V   NAL
Sbjct: 159 -------------------CGELPSYCCGRALHGLICC---------NGFESNVFVCNAL 190

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK---DEI 262
           +  Y +C                               G  E+A  +F+E+  K   D I
Sbjct: 191 VAMYSRC-------------------------------GSLEDASLVFDEITRKGIDDVI 219

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEM----QRDKIKPRKFVLSCV--LAACASLGALDQGI 316
           +W++I+  + K    + ALE+F+EM           R  ++S V  L ACASL AL Q  
Sbjct: 220 SWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIK 279

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            IH +  RN    DA +  AL+D YAKCG ++ A KVF  M+ K+V +WNAM+ G    G
Sbjct: 280 EIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSG 339

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY--GIDPEVE 434
               A ELF  M++E +  D IT++ V++  A  G     L A    QQM   G +P   
Sbjct: 340 NFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF---QQMILDGSEPNSV 396

Query: 435 HYGCIVDLLGRAGYLAEAEEV 455
               ++      G L++  E+
Sbjct: 397 TIISLLSACASLGALSQGMEI 417



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 27/273 (9%)

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           + S K   TG    +++ +   G  ++A  +   +     + W+ ++  + K+G+   A+
Sbjct: 79  YVSPKSLGTG----VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAI 134

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            V   M R   KP  F L   L AC  L +   G  +H  +  N    +  +  ALV MY
Sbjct: 135 GVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMY 194

Query: 342 AKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQ---REKM-- 393
           ++CG L+ A  VF+++  K   +V +WN+++           A+ELF +M     EK   
Sbjct: 195 SRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATN 254

Query: 394 -RPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGRA 446
            R D I+   +L ACA        L+AL  +++++      G   +      ++D   + 
Sbjct: 255 ERSDIISIVNILPACA-------SLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKC 307

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G + +A +V + M  + +   W A++    + G
Sbjct: 308 GSMNDAVKVFNVMEFK-DVVSWNAMVTGYTQSG 339


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 329/569 (57%), Gaps = 31/569 (5%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L  KC +S + LK  HA I+  G   +    G L+   A     + + A ++F+ + +PN
Sbjct: 120 LCEKC-SSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPN 178

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
            F++NS++R     ++P   + L+  M+     PN+FT P V KAC    A  E V VH 
Sbjct: 179 KFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHG 238

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD----------------GSKSDVIC 201
             +K G+   V V+++ I +Y   G ++ AR++ DD                G K D+I 
Sbjct: 239 LAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIV 298

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
            NAL D Y KCG++  A+ +F  T++KN  S+ +MIS +A+ G  E AR++F++M  K+ 
Sbjct: 299 RNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNV 358

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           ++W+++I  Y ++G Y+EAL++FN+M+  ++ P +  L  +LAAC+ LG L  G  IH++
Sbjct: 359 VSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 418

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           +  N       L  +L+DMYAKCG +  A  +F +M  K + +WN +IG LA+HG   +A
Sbjct: 419 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEA 478

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           I+LF +MQ +   PD IT   +LSAC+H+G++D GL     M  +Y +  E+EHY C+VD
Sbjct: 479 IKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVD 538

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--- 498
           LLGR G L EA E+I  MPM+P+  VW ALLGACR HG VE G+++ K LLE+EP +   
Sbjct: 539 LLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGL 598

Query: 499 -----------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                      +R +DV K+RKLM +RGIK     S I+++G I+EF   D  H     I
Sbjct: 599 YVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSI 658

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
           Y ML ++ + L+  GY  N S V F+ +E
Sbjct: 659 YAMLDQLTDHLRSAGYLCNISSVFFEAEE 687


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/635 (34%), Positives = 339/635 (53%), Gaps = 66/635 (10%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS--LYSEMVGVDSKPNKFTYPTVFKAC 143
           A  +F ++   ++  WN++L     H      ++  L  +M     +PN  T   +    
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 238

Query: 144 SITEADKEGVQVHAHVV----------KNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           +   A  +G  VHA+ +          K+ L   V + ++ + MYA  G +  AR++ D 
Sbjct: 239 AQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFK------------------------------ 223
               + + W+ALI G++ C  +  A  LFK                              
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 224 ----------STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                     S    +  + N+++S +A+ G  ++A  LF+EM  KD +++SA++ GY +
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G  +EA  VF +MQ   ++P    +  ++ AC+ L AL  G   H  V    +  +  +
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI 478

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             AL+DMYAKCGR+D++ +VF  M  +++ +WN MI G  +HG   +A  LF +M     
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 538

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
            PD +TF C+LSAC+H+G++  G      M+  YG+ P +EHY C+VDLL R G+L EA 
Sbjct: 539 PPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAY 598

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           E I SMP+  +  VW ALLGACR +  ++ G+++ +++ E+ P+                
Sbjct: 599 EFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R D+ A++R + K +G K +PG S I++NG +H F  GD SHPQ  EIY  L  I+  +K
Sbjct: 659 RFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIK 718

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P++S VL D++EEEKE A   HSEKLAIA+G ++     TI V KNLRVC DCH+
Sbjct: 719 KLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHT 778

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             K IS + +R IIVRD  R+HHF+NG+CSC DFW
Sbjct: 779 VIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 206/489 (42%), Gaps = 77/489 (15%)

Query: 64  DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV---ISL 120
           DH  SG L + H             +F+ +  P+V  +N ++RA    + P      + L
Sbjct: 66  DHIASGHLSRAH------------HLFDQIPSPDVRTYNDLIRA-YSSSSPTAAADGLHL 112

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           Y  M+     PN +T+P   KACS       G  +H H +  GL  D+ V ++ + MY  
Sbjct: 113 YRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA---------------------- 218
             C+  A  I       D++ WNA++ GY   G    A                      
Sbjct: 173 CACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV 232

Query: 219 -----------------------KELFKSTKDKNTGSYNAMISG------FARFGRFEEA 249
                                  +    S ++  +   + ++ G      +A+ G    A
Sbjct: 233 ALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 292

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---IKPRKFVLSCVLAAC 306
           R++F+ M  ++E+TWSA+I G+       +A  +F  M       + P    ++  L AC
Sbjct: 293 RRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRAC 350

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           ASL  L  G  +H  + ++ +  D   G +L+ MYAK G +D A  +F++M +K+  +++
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYS 410

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           A++ G   +GRA++A  +F KMQ   + PD  T   ++ AC+H   +  G  +   +  +
Sbjct: 411 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-II 469

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
            G+  E      ++D+  + G +  + +V + MP   +   W  ++     HG    G+ 
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG---LGKE 525

Query: 487 LGKILLEME 495
              + LEM 
Sbjct: 526 ATALFLEMN 534



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 32/329 (9%)

Query: 44  TSWQHLK---QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
            S  HL+   Q HA++ KSG   D     +L+  +A +     + A+ +F+ +   +   
Sbjct: 351 ASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL--IDQAIALFDEMAVKDTVS 408

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +++++   +++        ++ +M   + +P+  T  ++  ACS   A + G   H  V+
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
             GL  +  + ++ I MYA  G ++ +RQ+ +     D++ WN +I GY   G  + A  
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 221 LFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGY 271
           LF    +     +  ++  ++S  +  G   E +  F+ M     +T     +  ++D  
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLL 588

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           ++ G+  EA E    M    ++    V   +L AC     +D G  +   ++        
Sbjct: 589 SRGGFLDEAYEFIQSM---PLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE------- 638

Query: 332 VLG-------TALVDMYAKCGRLDMAWKV 353
            LG         L ++Y+  GR D A +V
Sbjct: 639 -LGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/667 (35%), Positives = 348/667 (52%), Gaps = 88/667 (13%)

Query: 11  PHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHF-QDHYVSG 69
           P    P  +   N P S   Q  +L  L   C TS + L Q HA  +K+G       V+ 
Sbjct: 5   PLTATPAPLLPANKPKSAAPQHPLLSHL-PHC-TSLRGLAQLHAAAVKAGLAAHPALVTR 62

Query: 70  TLVKCHA-NSRFSNFELALKVFNSVHKPNVFVW-NSVLRA-----CLEHNEPWRVISLYS 122
            L  C    +  ++   A +VF+ V +P+  VW N++LR          +     + ++ 
Sbjct: 63  LLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFV 122

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
            M+     P+ +T+ ++ KAC+   A + G Q HA  VK G  G  +V+ + I MYA   
Sbjct: 123 RMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYA--- 179

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFAR 242
                                       +CGD   A+  F         SYNAMI+   R
Sbjct: 180 ----------------------------ECGDARAARVTFGRADGDCVVSYNAMIAAAVR 211

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
             R                                 EAL +F EMQ   + P    +  V
Sbjct: 212 SSR-------------------------------PGEALVLFREMQAKGLNPTPVTVISV 240

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+ACA LGAL  G W+HD+V++  +     + TALVDMYAKCG L+ A  VF+ M+ ++ 
Sbjct: 241 LSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDR 300

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
             W+ MI   A HG   +AI LF +M+++ M+PD ITF  +L AC+H+G++  GL+    
Sbjct: 301 QAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDD 360

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M+  +GI P ++HYGC+ DLL R+G L  A + I  +P+ P   +W  LL AC  HG+VE
Sbjct: 361 MKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVE 419

Query: 483 FGERLGKILLEMEPQ--------NRRC------DDVAKMRKLMKERGIKTNPGSSMIDVN 528
            G+R+ + +LE++          +  C      +++ ++RKLM ++G+   PG S I+++
Sbjct: 420 LGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEID 479

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL-FDIDEEEKETAPKYHS 587
             +HEF  GDG HP+ +E   M+ ++I++LK+ GY P++S V   ++ EEEK  + KYHS
Sbjct: 480 NTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHS 539

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLAIAFG +NT PGAT+RV+KNLRVC DCHS  K +S VF R II+RD  R+HHF  G 
Sbjct: 540 EKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGI 599

Query: 648 CSCNDFW 654
           CSC D+W
Sbjct: 600 CSCGDYW 606


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 323/545 (59%), Gaps = 17/545 (3%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LK  HA I+  G   +    G L+   A     + + A ++F+ + +PN F++NS++R  
Sbjct: 4   LKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGY 63

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              ++P   + L+  M+     PN+FT P V KAC    A  E V VH   +K G+   V
Sbjct: 64  SNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLV 123

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKS---DVICWNALIDGYLKCGDIEGAKELFKST 225
            V+++ I +Y   G ++ AR++ DD +     D+I  NAL+D Y KCG++  A+ +F  T
Sbjct: 124 FVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRT 183

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           ++KN  S+ +MIS +A+ G  E AR++F++M  K+ ++W+++I  Y ++G Y+EAL++FN
Sbjct: 184 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 243

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +M+  ++ P +  L  +LAAC+ LG L  G  IH+++  N       L  +L+DMYAKCG
Sbjct: 244 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 303

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A  +F +M  K + +WN +IG LA+HG   +AI+LF +MQ +   PD IT   +LS
Sbjct: 304 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 363

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+H+G++D GL     M  +Y +  E+EHY C+VDLLGR G L EA E+I  MPM+P+ 
Sbjct: 364 ACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDV 423

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
            VW ALLGACR HG VE G+++ K LLE+EP +              +R +DV K+RKLM
Sbjct: 424 VVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLM 483

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
            +RGIK     S I+++G I+EF   D  H     IY ML ++ + L+  GY  N S V 
Sbjct: 484 IDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSAGYLCNISSVF 543

Query: 572 FDIDE 576
           F+ +E
Sbjct: 544 FEAEE 548


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/586 (35%), Positives = 321/586 (54%), Gaps = 41/586 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  +   A  VF  V      VWN+++   ++         L+  MV      ++FT+ +
Sbjct: 244 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 303

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+       G  VH  +               I++   F  V +A   ++      
Sbjct: 304 VLSACANAGFFVHGKSVHGQI---------------IRLQPNF--VPEAALPVN------ 340

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
               NAL+  Y K G I  AK +F +   K+  S+N ++SG+   G  ++A ++F  M  
Sbjct: 341 ----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 396

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K++++W  ++ GY   G  ++AL++FN+M+ + +KP  +  +  +AAC  LGAL  G  +
Sbjct: 397 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 456

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H H+ +         G AL+ MYAKCG ++ A  VF  M   +  +WNAMI  L  HG  
Sbjct: 457 HAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHG 516

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+ELF +M  E + PDRI+F  +L+AC HAG++D G      M++ +GI P  +HY  
Sbjct: 517 REALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 576

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGR+G + EA ++I +MP EP  ++WEA+L  CR +G++EFG      L  M PQ+
Sbjct: 577 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 636

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          R  D A++RKLM++RG+K  PG S I+V   IH F  GD  HP+ 
Sbjct: 637 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 696

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +E+Y  L+ I  +++  GY P++  VL D++  EKE     HSEKLA+ FG +   PGAT
Sbjct: 697 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 756

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           + V+KNLR+C DCH+A   +SK   R+I+VRD  R+HHF++G+CSC
Sbjct: 757 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 159/335 (47%), Gaps = 40/335 (11%)

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG---AKELFKSTKDKNTGSYNAMISG 239
           C      +L  G+ + +   NALI  Y+KC   E    A+++     DK+  ++  M+ G
Sbjct: 182 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 241

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G    AR +F E++ K ++ W+A+I GY + G   +A E+F  M  +K+   +F  
Sbjct: 242 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 301

Query: 300 SCVLAACASLGALDQGIWIHDHVKR--NSICVDAVL--GTALVDMYAKCGRLDMAWKVFE 355
           + VL+ACA+ G    G  +H  + R   +   +A L    ALV +Y+K G++ +A ++F+
Sbjct: 302 TSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFD 361

Query: 356 DMKMKEVFTWNA-------------------------------MIGGLAMHGRADDAIEL 384
            M +K+V +WN                                M+ G    G ++DA++L
Sbjct: 362 TMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKL 421

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E ++P   T+A  ++AC   G +  G Q   ++ Q  G +        ++ +  
Sbjct: 422 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLTMYA 480

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + G + +A  V   MP   ++  W A++ A  +HG
Sbjct: 481 KCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHG 514



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 159/388 (40%), Gaps = 62/388 (15%)

Query: 24  IPTSEFSQKTILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYV-------SGTLVKC 74
           +P  EF+  ++L    + C  +  + H K  H  I++    Q ++V       +  LV  
Sbjct: 294 VPLDEFTFTSVL----SACANAGFFVHGKSVHGQIIR---LQPNFVPEAALPVNNALVTL 346

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVL-----RACLE------------HNEPWRV 117
           +  S+     +A ++F++++  +V  WN++L       CL+            ++  W V
Sbjct: 347 Y--SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMV 404

Query: 118 --------------ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
                         + L+++M   D KP  +TY     AC    A K G Q+HAH+V+ G
Sbjct: 405 MVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG 464

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
                   ++ + MYA  G VN AR +       D + WNA+I    + G    A ELF 
Sbjct: 465 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 524

Query: 224 STK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKD 274
                  D +  S+  +++     G  +E    F  M     I+     ++ +ID   + 
Sbjct: 525 QMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRS 584

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   EA ++   M     +P   +   +L+ C + G ++ G +  D + R     D    
Sbjct: 585 GRIGEARDLIKTM---PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTY- 640

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEV 362
             L + Y+  GR   A +V + M+ + V
Sbjct: 641 ILLSNTYSAAGRWVDAARVRKLMRDRGV 668


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/581 (35%), Positives = 317/581 (54%), Gaps = 76/581 (13%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           K+F  + + ++  WN+++     +      +++  EM G + KP+ FT  +V    +   
Sbjct: 255 KIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENV 314

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
              +G ++H                         GC    RQ LD    ++V   ++LID
Sbjct: 315 DISKGKEIH-------------------------GC--SIRQGLD----AEVYVASSLID 343

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            Y KC                                R  ++ ++F  + ++D I+W++I
Sbjct: 344 MYAKCT-------------------------------RVVDSYRVFTLLTERDGISWNSI 372

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I G  ++G + E L+ F +M   KIKP+ +  S ++ ACA L  L  G  +H ++ RN  
Sbjct: 373 IAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGF 432

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             +  + ++LVDMYAKCG +  A ++F+ M+++++ +W AMI G A+HG A DAIELF +
Sbjct: 433 DENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQ 492

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           M+ E + P+ + F  VL+AC+HAG++D   +    M   +GI P VEHY  + DLLGRAG
Sbjct: 493 MKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAG 552

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------- 498
            L EA + I  MP+ P  +VW  LL ACR H  V+  E++   +LE++P+N         
Sbjct: 553 RLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLAN 612

Query: 499 -----RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                RR  + AK R  ++  GI+  P  S I+V   ++ F  GD SHP  ++I   ++ 
Sbjct: 613 IYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEV 672

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRV 613
           ++E ++ EGY P++S+V  D++EE+K+     HSE+LAI FG INT  G TIRV KNLRV
Sbjct: 673 LMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRV 732

Query: 614 CEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           C DCH+ATK ISK+  R+I+VRD  R+HHF+NG CSC D+W
Sbjct: 733 CTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 212/464 (45%), Gaps = 34/464 (7%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S    +Q HA +LK   FQ   +    +     S  +    +L++FN++H P    W SV
Sbjct: 23  SRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSV 79

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +R    H  P + +  +  M+     P+   +P+V KAC++      G  +H ++++ GL
Sbjct: 80  IRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGL 139

Query: 165 CGDVHVKSSGIQMYACFGCVNK-------ARQILDDGSKSDVICWNALI---DGYLKCGD 214
             D++  ++ + MY+    + K       A Q+LD+ ++       A +   +   K  D
Sbjct: 140 DFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSD 199

Query: 215 IEG--------AKELFKSTKD---KNTGSYNAM--------ISGFARFGRFEEARKLFNE 255
           IE         ++E      +   K    Y  M        I   +     +  RK+F  
Sbjct: 200 IEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEM 259

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M +KD ++W+ II G  ++G Y E L +  EM    +KP  F LS VL   A    + +G
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             IH    R  +  +  + ++L+DMYAKC R+  +++VF  +  ++  +WN++I G   +
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G  D+ ++ F +M   K++P   +F+ ++ ACAH   +  G Q   Y+ +  G D  +  
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR-NGFDENIFI 438

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              +VD+  + G +  A ++   M +  +   W A++  C  HG
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHG 481



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 139/298 (46%), Gaps = 16/298 (5%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+   N+    F+  ++L ++      S    K+ H   ++ G   + YV+ +L+  +A 
Sbjct: 290 EMGGANLKPDSFTLSSVLPLIAENVDISKG--KEIHGCSIRQGLDAEVYVASSLIDMYA- 346

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            + +    + +VF  + + +   WNS++  C+++      +  + +M+    KP  +++ 
Sbjct: 347 -KCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFS 405

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           ++  AC+       G Q+H ++ +NG   ++ + SS + MYA  G +  ARQI D     
Sbjct: 406 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR 465

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLF 253
           D++ W A+I G    G    A ELF+  K    + N  ++ A+++  +  G  +EA K F
Sbjct: 466 DMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYF 525

Query: 254 NEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           N M     I      ++A+ D   + G  +EA +    M    I P   V + +L+AC
Sbjct: 526 NSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGM---PIGPTGSVWATLLSAC 580



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           +D   K+FE M  K++ +WN +I G A +G   + + +  +M    ++PD  T + VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 407 CAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            A    I +G  +   +  Q   G+D EV     ++D+  +   + ++  V + +  E +
Sbjct: 310 IAENVDISKGKEIHGCSIRQ---GLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLT-ERD 365

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILL 492
              W +++  C ++G  + G +  + +L
Sbjct: 366 GISWNSIIAGCVQNGLFDEGLKFFRQML 393


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 324/584 (55%), Gaps = 23/584 (3%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           +F  +  P V  WN+++   +++        L+  M       N  ++  +    +    
Sbjct: 343 LFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRM----PFRNTISWAGMIAGYAQNGR 398

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNA 204
            +E + +   + +NG+   +   +S     +  G +   RQ+    +  G + +    NA
Sbjct: 399 SEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNA 458

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           LI  Y KC ++E  +++F   + K+T S+N+ I+   +    E+AR +F+ M  +D ++W
Sbjct: 459 LISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSW 518

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + II  Y +     EA+E F  M  +  KP   +L+ +L+ C  LG+   G  IH    +
Sbjct: 519 TTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIK 578

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           + +  + ++  AL+ MY KCG  D + KVF+ M+ +++FTWN  I G A HG   +AI++
Sbjct: 579 HGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKM 637

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           +  M+   + P+ +TF  +L+AC+HAG++D G Q    M + YG+ P +EHY C+VDLLG
Sbjct: 638 YEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLG 697

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----- 499
           R G +  AE+ I  MP+EP+  +W ALLGAC+ H   E G R  + L   EP N      
Sbjct: 698 RTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVM 757

Query: 500 ---------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
                       +VA++RK+MK+RG+   PG S + +   +H F TGD  H +++EI   
Sbjct: 758 LSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYT 817

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           L+ +   L+  GY P++  VL DIDEE+KE++  YHSEKLA+A+G + T  G  I+++KN
Sbjct: 818 LQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKN 877

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LR+C DCH+  K +S V KRDI +RD  R+HHFRNG CSC DFW
Sbjct: 878 LRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 198/462 (42%), Gaps = 76/462 (16%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACL---EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           A  +F  + + N+  W  ++   +   +H + W +  +   M    + P++  + +V  A
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRM---MHHEGASPDQSNFASVLSA 232

Query: 143 CSITEADKEGVQ--VHAHVVKNGLCGDVHVKSSGIQMYAC-FGCVNKARQILDDGSKSDV 199
             +T     GV   +   V+K G   DV + +S + +Y      ++ A +  D   + + 
Sbjct: 233 --VTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNE 290

Query: 200 ICWN-------------------------------ALIDGYLKCGDIEGAKELFKSTKDK 228
             W+                               AL+ G  +CG I  A+ LF+   D 
Sbjct: 291 YTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDP 350

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
              S+NAMI+G+ + G  +EA++LF+ M  ++ I+W+ +I GY ++G  +EAL++   + 
Sbjct: 351 IVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALH 410

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           R+ + P    L+    AC+ +GAL+ G  +H    +     ++ +  AL+ MY KC  ++
Sbjct: 411 RNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNME 470

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGL-------------------------------AMHGR 377
              +VF  M++K+  +WN+ I  L                               A   R
Sbjct: 471 YVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAER 530

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
            D+A+E F  M  E  +P+      +LS C   G    G Q  T   + +G+D E+    
Sbjct: 531 GDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIK-HGMDSELIVAN 589

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            ++ +  + G  A++ +V  SM  E +   W   +  C +HG
Sbjct: 590 ALMSMYFKCG-CADSHKVFDSME-ERDIFTWNTFITGCAQHG 629



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 154/318 (48%), Gaps = 11/318 (3%)

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           G+V   +  +  YA  G V  AR++ D   + + + WNA++  Y++ GDI  A+ LF + 
Sbjct: 93  GNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
             ++  S+N+M++G+    +  +A  LF +M  ++ +TW+ +I GY +   + +  ++F 
Sbjct: 153 PSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK-C 344
            M  +   P +   + VL+A   L  L     +   V +     D V+GT+++++Y +  
Sbjct: 213 MMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             LD+A K F+ M  +  +TW+ MI  L+  GR D AI ++ +    K  P +      L
Sbjct: 273 SALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR-DPVKSIPSQTALLTGL 331

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           + C       R  +A    +Q+   DP V  +  ++    + G + EA+E+   MP   N
Sbjct: 332 ARCG------RITEARILFEQI--PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-N 382

Query: 465 AAVWEALLGACRKHGEVE 482
              W  ++    ++G  E
Sbjct: 383 TISWAGMIAGYAQNGRSE 400



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 50/321 (15%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D    S+ I+  A  G + +AR++ D     D+I WN++I  Y   G +E A+ LF +  
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS 91

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
             N  +   ++SG+AR GR  +AR++F+ M +++ + W+A++  Y ++G    A  +F+ 
Sbjct: 92  GGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDA 151

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M      P + V S                W       NS+         +VD       
Sbjct: 152 M------PSRDVTS----------------W-------NSMVTGYCHSRQMVD------- 175

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGG---LAMHGRADDAIELFFKMQREKMRPDRITFACV 403
              AW +F+ M  + + TW  MI G   +  HG+  D   +F  M  E   PD+  FA V
Sbjct: 176 ---AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWD---IFRMMHHEGASPDQSNFASV 229

Query: 404 LSACAHAGMIDRG-LQALTYMQQMYGIDPEVEHYGCIVDLLGR-AGYLAEAEEVISSMPM 461
           LSA    G+ D G L+ L  +    G + +V     I+++  R A  L  A +    M +
Sbjct: 230 LSAV--TGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGM-V 286

Query: 462 EPNAAVWEALLGACRKHGEVE 482
           E N   W  ++ A    G ++
Sbjct: 287 ERNEYTWSTMIAALSHGGRID 307



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 142/318 (44%), Gaps = 38/318 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H++ +K+G   + YV   L+  +   R  N E   +VFN +   +   WNS + A +
Sbjct: 438 RQVHSLAVKAGCQFNSYVCNALISMYGKCR--NMEYVRQVFNRMRVKDTVSWNSFIAALV 495

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ-----VHAHVVKN-- 162
           ++N       ++  M+  D      ++ T+  A +  E   E V+     +H H   N  
Sbjct: 496 QNNMLEDARHIFDNMLSRDV----VSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSP 551

Query: 163 ------GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
                  +CG +     G Q++            +  G  S++I  NAL+  Y KCG  +
Sbjct: 552 ILTILLSVCGGLGSAKLGQQIHTV---------AIKHGMDSELIVANALMSMYFKCGCAD 602

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYT 272
             K +F S ++++  ++N  I+G A+ G   EA K++  M       +E+T+  +++  +
Sbjct: 603 SHK-VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACS 661

Query: 273 KDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGI--WIHDH-VKRNSIC 328
             G   E  + F  M RD  + P     +C++      G + QG   +I+D  ++ +++ 
Sbjct: 662 HAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDV-QGAEKFIYDMPIEPDTVI 720

Query: 329 VDAVLGTALVDMYAKCGR 346
             A+LG   +   A+ GR
Sbjct: 721 WSALLGACKIHKNAEIGR 738



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 41/159 (25%)

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
           +D    +A +   A+ GRL  A +VF+ M  +++  WN+MI      G  +DA  LF  +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
               +R    T   +LS  A                                    R G 
Sbjct: 91  SGGNVR----TATILLSGYA------------------------------------RLGR 110

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           + +A  V   MP E N   W A++    ++G++    RL
Sbjct: 111 VLDARRVFDGMP-ERNTVAWNAMVSCYVQNGDITMARRL 148


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 291/468 (62%), Gaps = 16/468 (3%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N+LI  Y+ CGD+  A+++F     K+  S+ +++  ++R      A ++F     KD +
Sbjct: 197 NSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMV 256

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
            W+A++ GY ++    +ALE F +M    +   +  L+  ++ACA LGA+ +  W+ +  
Sbjct: 257 AWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIA 316

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +RN +  + V+G+ LVDMYAKCG +D A KVFE M  K V+T+++MI GLA HGRA+D I
Sbjct: 317 ERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVI 376

Query: 383 ELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
            LF  M +R  + P+ +TF  VL+AC+HAGM+  G      M+  YGI P  +HY C+VD
Sbjct: 377 ALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVD 436

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--- 498
           LL R+G + EA +++ SM +EP+  VW ALLGACR HG  E  +   + L  +EP+    
Sbjct: 437 LLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGN 496

Query: 499 -----------RRCDDVAKMRKLMKERGIKTNPGSSMID-VNGVIHEFRTGDGSHPQVKE 546
                         D+V+K+RKLM+ RG+K +P  S  +  +G +H+F  GD +HP + E
Sbjct: 497 YVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHE 556

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I   L ++ EKL + GY P  S V++++ EEEKE     HSEKLA++FG +  +  ++IR
Sbjct: 557 IKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRSSIR 616

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLR+CEDCH   +L+SKV   +I+VRD +R+HHFR+G+CSC  FW
Sbjct: 617 IVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 39/229 (17%)

Query: 172 SSGIQMYACFGCVNKARQILD----DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           +  I   A  G V +A  + +    +G   +V+  + L+D Y KCG I+ A+++F+   D
Sbjct: 294 TGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHD 353

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           KN  +Y++MI G A  GR  +   LFN+M                              +
Sbjct: 354 KNVYTYSSMIVGLASHGRANDVIALFNDM------------------------------V 383

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKCGR 346
           +R  ++P       VL AC+  G + +G +    +K R  I   A     +VD+ A+ G 
Sbjct: 384 RRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGL 443

Query: 347 LDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQRE 391
           +  A  + + M ++     W A++G   +HG    A  A E  F+++ E
Sbjct: 444 VTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPE 492


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 317/577 (54%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y ++  AC+  +       +HAH+ ++ L GD  + +S I MY   G V+ AR +
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 191 LDDGSKSDVICWNALIDGYLK-----------------------------------CGDI 215
            D     DV+ W  LI GY +                                   CG  
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 216 EGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
              +++     K   D++    +A++  +AR  + + A  +F+ +  K+E++W+A+I G+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            +    +  L  F EMQR+      F  S + +A A +GAL+QG W+H H+ ++   + A
Sbjct: 238 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +G  ++ MYAK G +  A KVF+ M  +++ TWN M+  LA +G   +A+  F ++++ 
Sbjct: 298 FVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKC 357

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            ++ ++ITF  VL+AC+H G++  G      M+  Y + PE++HY   VDLLGRAG L E
Sbjct: 358 GIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKE 416

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   +  MPMEP AAVW ALLGACR H   + G+     + E++P +             
Sbjct: 417 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYAS 476

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             + +D A++RK+MK  G+K  P  S + +   +H F   D +HP+  +IY M ++I  +
Sbjct: 477 TGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMR 536

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           +K  GY PN++ VL  I+E+E+ET  KYHSEK+A+AF  IN   GA+IR++KN+R+C DC
Sbjct: 537 IKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDC 596

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA K +SKVFKR+I+VRD  R+HHF  G CSC D+W
Sbjct: 597 HSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 141/333 (42%), Gaps = 40/333 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  VF+ +   +V  W  ++    ++  P   I L  +M+    +PN FT+ ++ KA   
Sbjct: 114 ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 173

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G Q+HA  VK     DV+V S+ + MYA    ++ A  + D     + + WNAL
Sbjct: 174 CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 233

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEE------------- 248
           I G+ +  D E     F   +    G    +Y++M S FAR G  E+             
Sbjct: 234 IAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQ 293

Query: 249 ----------------------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                                 ARK+F+ M+ +D +TW+ ++    + G  KEA+  F E
Sbjct: 294 KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE 353

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +++  I+  +     VL AC+  G + +G    D +K  ++  +     + VD+  + G 
Sbjct: 354 IRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGL 413

Query: 347 LDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRA 378
           L  A      M M+     W A++G   MH  A
Sbjct: 414 LKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 446



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 146/321 (45%), Gaps = 14/321 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA+ +K    +D YV   L+  +A  R    ++A+ VF+ +   N   WN+++    
Sbjct: 181 EQMHALAVKYNWDEDVYVGSALLDMYA--RCEQMDMAIMVFDRLVSKNEVSWNALIAGFA 238

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    +  ++EM         FTY ++F A +   A ++G  VHAH++K+G      
Sbjct: 239 RKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAF 298

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKST 225
           V ++ + MYA  G +  AR++ D   K D++ WN ++    + G     +   +E+ K  
Sbjct: 299 VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG 358

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEIT-WSAIIDGYTKDGYYKEAL 281
              N  ++ ++++  +  G  +E +  F+ M D   + EI  + + +D   + G  KEAL
Sbjct: 359 IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
               +M    ++P   V   +L AC        G +  DHV       D      L ++Y
Sbjct: 419 IFVFKM---PMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELD-PDDTGPPVLLYNIY 474

Query: 342 AKCGRLDMAWKVFEDMKMKEV 362
           A  G+ + A +V + MK   V
Sbjct: 475 ASTGKWNDAARVRKMMKATGV 495



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 3/199 (1%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            L   + +   ++ P   +   ++AACA    L     IH H+ R+ +  DA L  +L+ 
Sbjct: 44  GLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIH 103

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG +  A  VF+ M  ++V +W  +I G A +    +AI L   M R + RP+  T
Sbjct: 104 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L A    G    G Q +  +   Y  D +V     ++D+  R   +  A  V   +
Sbjct: 164 FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222

Query: 460 PMEPNAAVWEALL-GACRK 477
            +  N   W AL+ G  RK
Sbjct: 223 -VSKNEVSWNALIAGFARK 240


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/658 (32%), Positives = 342/658 (51%), Gaps = 89/658 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV--DSKPNKFTYPTVFKAC 143
           A +VF+     ++  W S++  C         +  ++EM+     + PN F    V + C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA----------CFGCVNK------- 186
           +     + G ++H  ++++G+C DV + ++ + MYA           FG + +       
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 187 --------------ARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDK 228
                         A Q+ D+ S  DV  WN ++ G ++ G    A    +++ ++    
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 229 NTGSYN-----------------------------------AMISGFARFGRFEEARKLF 253
           +  +Y+                                   +++  + + G  E A  +F
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 254 NEMNDKDE---ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +  +D  E     WS ++ GY ++G  +EALE F  M R+ +   +F+L+ V +ACA+ G
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            ++QG  +H  V++     DA L +A+VDMY+K G L+ A ++F   + K V  W  M+ 
Sbjct: 377 MVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLC 436

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
             A HG+   A+E+F +M+ EK+ P+ IT   VLSAC+H+G++  G      MQ+ YGI 
Sbjct: 437 SYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIV 496

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P  EHY C+VDL GRAG L +A+  I    +   A VW+ LL ACR H  +E+ +   + 
Sbjct: 497 PNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEK 556

Query: 491 LLEME--------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           L+++E                N +  D  K+R  MKER ++  PG S I +  V+H F  
Sbjct: 557 LVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVA 616

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
            D SHP+  EIY  L+K++E+LK  GY+  +  V+ DI+EE++ET+ K+HSEKLAIAFG 
Sbjct: 617 LDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGI 676

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I+T  G  +R+ KNLRVCEDCH A K I++   R+I+VRD  R+HHF++G+CSC DFW
Sbjct: 677 ISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 114/269 (42%), Gaps = 17/269 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN---SVHKPNVFVWNSVLR 106
           +Q H  ++ +   +D +V  +L+  +   +    E AL +F+      +   F W++++ 
Sbjct: 278 RQLHGRVVVAVLEEDAFVGCSLMDMYC--KCGEMESALSIFDRWSDFTEDRQFAWSTMVA 335

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +++      +  +  M+       +F   +V  AC+     ++G QVH  V K G   
Sbjct: 336 GYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRF 395

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D  + S+ + MY+  G +  A +I       +V  W  ++  Y   G    A E+F   K
Sbjct: 396 DAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMK 455

Query: 227 DK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYY 277
            +    N  +  A++S  +  G   +    FN M ++  I      ++ ++D Y + G  
Sbjct: 456 AEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLL 515

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +A    N ++ +KI     V   +L+AC
Sbjct: 516 DKAK---NFIEENKISHEAVVWKTLLSAC 541



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 14/192 (7%)

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + P+ F+           GA      IH    R  +   +V+   L +          A 
Sbjct: 29  LSPQTFIFHSSARLLPEAGACAAKKAIHRQSVRGCVPSSSVIARGLHN----------AH 78

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE--KMRPDRITFACVLSACAH 409
           +VF+    + +  W ++I G A  GR  D +  F +M  E     P+    A VL  CA 
Sbjct: 79  RVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAG 138

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
            G ++ G +   ++ +  G+ P+V     ++D+  + G    A     +M  + +A  W 
Sbjct: 139 LGDVESGRRIHGWILR-SGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA-QKDATSWN 196

Query: 470 ALLGACRKHGEV 481
            ++ AC + G++
Sbjct: 197 IVIRACLQDGDL 208


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/435 (42%), Positives = 279/435 (64%), Gaps = 14/435 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA++  +A+ G F+ A  +F +M DKD I+W++++ G   +G Y+EAL +F EM+   I 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P + V++ VL+ACA L  L+ G  +H +  ++ +     +  +LV MYAKCG ++ A KV
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M++++V TW A+I G A +GR  +++  +  M    ++PD ITF  +L AC+HAG++
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G      M+++YGI P  EHY C++DLLGR+G L EA+E+++ M ++P+A VW+ALL 
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           ACR HG VE GER    L E+EP+N               + ++ AK R+LMK RG+   
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305

Query: 520 PGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           PG S I+++  +H F + D SHP+  EIY  + +I+  +K  GY P+ +  L D+DEE K
Sbjct: 306 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 365

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
           E    YHSEKLA+AFG +   PGA IR+ KNLR+C DCH+A K +S VF R +I+RD   
Sbjct: 366 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNC 425

Query: 640 YHHFRNGKCSCNDFW 654
           +HHFR G CSC+D+W
Sbjct: 426 FHHFREGACSCSDYW 440



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 21/308 (6%)

Query: 67  VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG 126
           V+  LV  +A   +  F+ A  VF  +   +V  W S++  C+ +      + L+ EM  
Sbjct: 4   VNNALVDMYAKXGY--FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           +   P++     V  AC+     + G QVHA+ +K+GL   + V +S + MYA  GC+  
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKSTKDKNTGSYNAMISGFAR 242
           A ++ D     DVI W ALI GY + G     +    ++  S    +  ++  ++   + 
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 243 FGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
            G  E  R  F  M +   I      ++ +ID   + G   EA E+ N+M    ++P   
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA---VQPDAT 238

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVD---AVLGTALVDMYAKCGRLDMAWKVF 354
           V   +LAAC   G ++ G    +    N   ++   AV    L ++Y+  G+ + A K  
Sbjct: 239 VWKALLAACRVHGNVELG----ERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTR 294

Query: 355 EDMKMKEV 362
             MK++ V
Sbjct: 295 RLMKLRGV 302



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 4/149 (2%)

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           ++  ALVDMYAK G  D A+ VFE M  K+V +W +++ G   +G  ++A+ LF +M+  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
            + PD+I  A VLSACA   +++ G Q    +++   G    V++   +V +  + G + 
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDN--SLVSMYAKCGCIE 120

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +A +V  SM ++ +   W AL+    ++G
Sbjct: 121 DANKVFDSMEIQ-DVITWTALIVGYAQNG 148



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 31/219 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA  LKSG      V  +LV  +A  +    E A KVF+S+   +V  W +++    
Sbjct: 88  KQVHANFLKSGLGSSLSVDNSLVSMYA--KCGCIEDANKVFDSMEIQDVITWTALIVGYA 145

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC---- 165
           ++      ++ Y++M+    KP+  T+  +  ACS           HA +V++G      
Sbjct: 146 QNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS-----------HAGLVEHGRSYFQS 194

Query: 166 -GDVHVKSSGIQMYACF-------GCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIE 216
             +V+    G + YAC        G + +A+++L+    + D   W AL+      G++E
Sbjct: 195 MEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVE 254

Query: 217 ----GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
                A  LF+  + KN   Y  + + ++  G++EEA K
Sbjct: 255 LGERAANNLFE-LEPKNAVPYVLLSNLYSAAGKWEEAAK 292


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/516 (37%), Positives = 292/516 (56%), Gaps = 45/516 (8%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LKQ H  +LK G  +       L+  +A+  FSN   A  VF+ +  PN  +WN+++RA 
Sbjct: 27  LKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAY 86

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              N+P   + LY +M+      N +T+P + KACS   A  E  Q+H  ++K G     
Sbjct: 87  SNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRG----- 141

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
                       FG              S+V   N+L+  Y   G I+ A  LF     +
Sbjct: 142 ------------FG--------------SEVYATNSLLRVYAISGSIKSAHVLFDLLPSR 175

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +  S+N MI G+ + G  E A K+F  M +K+ I+W+++I G+ + G +KEAL +  +M 
Sbjct: 176 DIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQML 235

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
              IKP K  LSC L+ACA LGAL+QG WIH ++ +N I +D VLG AL+DMY KCG + 
Sbjct: 236 VAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMK 295

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  VF  ++ K V+TW A+IGG A+HG+  +A++ F +MQ+  ++P   TF  VL+AC+
Sbjct: 296 KALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACS 355

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H G+++ G      M   Y + P +EHYGC+VDLLGRAG+L EA+E + SMP++PNAA+W
Sbjct: 356 HTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIW 415

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            +LL AC  H  +E G+ +GK L+E++P++                 D+ +++R  +K +
Sbjct: 416 GSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNK 475

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLM 550
           G+   PG S I +NGV HEF  G   HP V+E+Y M
Sbjct: 476 GLLNLPGCSTITLNGVAHEFFAGAEPHPHVREMYDM 511


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/443 (42%), Positives = 274/443 (61%), Gaps = 23/443 (5%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK---------DGYYKEALEVFN 285
           A++  FAR GR    R++F+ +   D   W+A++  Y +                LE+F 
Sbjct: 518 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFV 577

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M    I+P +  L  V+ AC  LGA+  G+W H +  +  + V+ ++ TALV+MYA CG
Sbjct: 578 RMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 637

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RLD+A +VF  +  ++   +NAM+ GLA+HG    A+ L  +M    +  D +T   V+ 
Sbjct: 638 RLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 697

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG++D GL     M+  +GI+P +EHYGC++D+L RAG L  AE++I  M + PNA
Sbjct: 698 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNA 757

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLM 511
           A++ +L+ AC  HG++E GE++   L+ +EP              +  R +D  K RK M
Sbjct: 758 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 817

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K  GI  NPGSS++D+NGV+HEF  GD +HP  KEIY M+++I  +L   G   ++S  L
Sbjct: 818 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 877

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD++EE+K     YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH + KL+S+V+ R+
Sbjct: 878 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 937

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I++RDR R+HHFR+G CSC DFW
Sbjct: 938 IVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 21/246 (8%)

Query: 88  KVFNSVHKPNVFVWNSVL----RACLEH-----NEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +VF+ +  P++  WN++L    R C        +    ++ L+  M+ +  +PN+ T   
Sbjct: 534 RVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFVRMLSLAIEPNEITLVA 593

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV  H + VK  L  +  V ++ ++MYA  G ++ A Q+    S  D
Sbjct: 594 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDRD 653

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
             C+NA++ G    G    A  L              +  +++   A  G  +E    F+
Sbjct: 654 TRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 713

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  I      +  +ID  ++ G    A ++ +EM    I P   +   ++ AC   
Sbjct: 714 RMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEML---IVPNAAIYRSLIRACGIH 770

Query: 310 GALDQG 315
           G L+ G
Sbjct: 771 GKLELG 776



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA---------MHGRADD 380
           D VLG AL+ ++A+CGR+    +VF+ +   ++  WNA++   A             AD 
Sbjct: 512 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADA 571

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCI 439
            +ELF +M    + P+ IT   V+ AC   G +  G+ A TY +++   ++  V     +
Sbjct: 572 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA--TAL 629

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           V++    G L  AE+V +++  + +   + A+L     HG
Sbjct: 630 VEMYAGCGRLDLAEQVFAAVS-DRDTRCYNAMLHGLAVHG 668


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/630 (34%), Positives = 342/630 (54%), Gaps = 66/630 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA I+KSG    H    TL+  +        + ALK+F+++ + +   W +VL AC 
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTLIDAYGKCGL--LKDALKLFDALPQQDHVAWATVLSACN 85

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD--KEGVQVHAHVVKNGLCGD 167
             N P +  S+   ++    +P+ F + ++ KAC+   +   K G Q+HA  + +    D
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             VKSS + MYA F   +  R + D                               S  +
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFD-------------------------------SIFE 174

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            ++ S+ AMISG+AR GR  EA +LF E   K+   W+A+I G  + G   +AL +F EM
Sbjct: 175 LSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEM 234

Query: 288 QRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--------TALV 338
           +R+ +      VLS V+ ACA+    + G  +H        CV   LG         ALV
Sbjct: 235 RREGVSIADPLVLSSVVGACANSAVRELGKQVH--------CVVITLGYESCLFISNALV 286

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKC  +  A  +F +M+ K+V +W ++I G A HG A++A+ L+  M    ++P+ +
Sbjct: 287 DMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEV 346

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  ++ AC+H G++ +G      M + +GI P ++HY C++DL  R+G+L EAE +I +
Sbjct: 347 TFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRT 406

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDV 504
           MP++P+   W ALL AC+ HG  +   R+   LL+++P++                 ++V
Sbjct: 407 MPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENV 466

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           + +RKLM  + +K  PG S +D+      F  G+ S P   EI  ++ K+  +++  GY 
Sbjct: 467 SMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYV 526

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P++S VL D+D++EKE    +HSE+LA+A+G +   PG TIR++KNLRVC DCH+  KLI
Sbjct: 527 PDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLI 586

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           S +  R+I VRD  RYHHF++GKCSCNDFW
Sbjct: 587 SAITSREIYVRDVKRYHHFKDGKCSCNDFW 616


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 334/616 (54%), Gaps = 56/616 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP-TVFKACS 144
           A +VF+++   NV  W S++R  + + +      L+  M      P+K     TV     
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM------PHKNVVSWTVMLGGL 158

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           + E   +  +    ++      DV   ++ I  Y   G +++AR + D+  K +V+ W A
Sbjct: 159 LQEGRVDDARKLFDMMPEK---DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTA 215

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA--------------- 249
           ++ GY + G ++ A++LF+   ++N  S+ AM+ G+   GR  EA               
Sbjct: 216 MVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVC 275

Query: 250 ----------------RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
                           R++F  M ++D  TWSA+I  Y + GY  EAL +F  MQR+ + 
Sbjct: 276 NEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLA 335

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                L  VL+ C SL +LD G  +H  + R+    D  + + L+ MY KCG L  A +V
Sbjct: 336 LNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQV 395

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F    +K+V  WN+MI G + HG  ++A+ +F  M    + PD +TF  VLSAC+++G +
Sbjct: 396 FNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKV 455

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
             GL+    M+  Y ++P +EHY C+VDLLGRA  + EA +++  MPMEP+A VW ALLG
Sbjct: 456 KEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLG 515

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN 519
           ACR H +++  E   + L ++EP+N               R  DV  +R+ +K R +   
Sbjct: 516 ACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKL 575

Query: 520 PGSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
           PG S I+V   +H F  GD   HP+   I  ML+K+   L+  GY P+ S VL D+DEEE
Sbjct: 576 PGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEE 635

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           K  +  YHSEKLA+A+G +    G  IRV+KNLRVC DCHSA KLI+KV  R+II+RD  
Sbjct: 636 KTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDAN 695

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHF++G CSC D+W
Sbjct: 696 RFHHFKDGHCSCKDYW 711



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 208/444 (46%), Gaps = 33/444 (7%)

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMV 125
           S   + C+A  R    + A KVF+    P+  V  WN+++ A  E  +P   + L+ +M 
Sbjct: 25  SSYAIACYA--RNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM- 81

Query: 126 GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCV 184
                P +    TV     I+   K G+   A  V + +   +V   +S ++ Y   G V
Sbjct: 82  -----PQR---NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDV 133

Query: 185 NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG 244
            +A ++       +V+ W  ++ G L+ G ++ A++LF    +K+  +   MI G+   G
Sbjct: 134 AEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEG 193

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVL 303
           R +EAR LF+EM  ++ +TW+A++ GY ++G    A ++F  M +R+++       + +L
Sbjct: 194 RLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVS-----WTAML 248

Query: 304 AACASLGALDQGIWIHDH--VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
                 G + +   + D   VK   +C + ++G  L       G +D A +VF+ MK ++
Sbjct: 249 LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGL------NGEVDKARRVFKGMKERD 302

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             TW+AMI      G   +A+ LF +MQRE +  +  +   VLS C     +D G Q   
Sbjct: 303 NGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHA 362

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            + +    D ++     ++ +  + G L  A++V +  P++ +  +W +++    +HG  
Sbjct: 363 QLVR-SEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHG-- 418

Query: 482 EFGERLGKILLEMEPQNRRCDDVA 505
             GE    +  +M       DDV 
Sbjct: 419 -LGEEALNVFHDMCSSGVPPDDVT 441



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 57/300 (19%)

Query: 230 TGSYNAMISGFARFGRFEEARKLFNE---------------------------------M 256
           T S +  I+ +AR G+ + ARK+F+E                                 M
Sbjct: 22  TTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM 81

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQG 315
             ++ ++W+ +I G+ K+G   EA  VF+ M  R+ +     V   V      +   ++ 
Sbjct: 82  PQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRN--GDVAEAERL 139

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
            W   H  +N +    +LG  L +     GR+D A K+F+ M  K+V     MIGG    
Sbjct: 140 FWHMPH--KNVVSWTVMLGGLLQE-----GRVDDARKLFDMMPEKDVVAVTNMIGGYCEE 192

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           GR D+A  LF +M +  +    +T+  ++S  A  G +D         ++++ + PE   
Sbjct: 193 GRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVD-------VARKLFEVMPERNE 241

Query: 436 YGCIVDLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
                 LLG   +G + EA  +  +MP++P     E ++G    +GEV+   R+ K + E
Sbjct: 242 VSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGL-NGEVDKARRVFKGMKE 300



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 19/220 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S  H KQ HA +++S   QD YV+  L+  +   +  N   A +VFN     +V +WNS
Sbjct: 352 ASLDHGKQVHAQLVRSEFDQDLYVASVLITMYV--KCGNLVRAKQVFNRFPLKDVVMWNS 409

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    +H      ++++ +M      P+  T+  V  ACS +   KEG+++   +    
Sbjct: 410 MITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCK- 468

Query: 164 LCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG---YLKC 212
                +    GI+ YAC          VN+A ++++    + D I W AL+     ++K 
Sbjct: 469 -----YQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKL 523

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
              E A E     + KN G Y  + + +A  GR+ +   L
Sbjct: 524 DLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVL 563


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/642 (32%), Positives = 345/642 (53%), Gaps = 66/642 (10%)

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           VKC      S   LA  +F+ +   +V  +N ++   L   E   V+ L+  MV    +P
Sbjct: 66  VKC------SKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQP 119

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA-CFGCVNKARQI 190
           N++ + TV  AC+ +    EG+Q H  + K GL     VKSS + MY+ CF  V+ A Q+
Sbjct: 120 NEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFH-VDLALQV 178

Query: 191 LDD-----GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSY-------- 233
           L+       + +D  C+N++++  ++ G +  A E+     D+    ++ +Y        
Sbjct: 179 LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 234 ---------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
                                      + ++  F + G    ARK+F+ + +++ + W++
Sbjct: 239 QIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTS 298

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++  Y ++G ++E L + + M R+     +F  + +L A A + AL  G  +H  V++  
Sbjct: 299 LMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLG 358

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           I    ++G AL++MY+KCG +D ++ VF DM+ +++ TWNAMI G + HG    A+ LF 
Sbjct: 359 IKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQ 418

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M      P+ +TF  VLSACAH  +++ G   L  + + + ++P +EHY C+V +L RA
Sbjct: 419 DMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRA 478

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------- 498
           G L EAE  + +  ++ +   W  LL AC  H     G ++ + +L+M+P++        
Sbjct: 479 GMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLS 538

Query: 499 ------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                 R  D V  +RK+M+ER +K  PG S I++   +H F +   +HP+  +IY  ++
Sbjct: 539 NMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQ 598

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
            ++E +K  GY PN   VL D+++E+KE+   YHSEKLAIA+G +     A IRVIKNLR
Sbjct: 599 LLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLR 658

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +CEDCH+A KLISKV  R IIVRD  R+HHFR+G C+C D W
Sbjct: 659 ICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 162/372 (43%), Gaps = 50/372 (13%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-----KPNVFVWNSVL 105
           Q H  + K G    H+V  +LV  H  S+  + +LAL+V  S H       + F +NSVL
Sbjct: 142 QCHGFLFKFGLVFHHFVKSSLV--HMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVL 199

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
            A +E       + +   MV      +  TY +V   C        G+QVHA ++K GL 
Sbjct: 200 NALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLT 259

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV V S  + M+   G V  AR++ D     +V+ W +L+  YL+ G+ E    L    
Sbjct: 260 FDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCM 319

Query: 226 KDKNTGSY---------------------------------------NAMISGFARFGRF 246
             + T S                                        NA+I+ +++ G  
Sbjct: 320 DREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCI 379

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           + +  +F +M ++D ITW+A+I GY++ G  K+AL +F +M      P       VL+AC
Sbjct: 380 DSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSAC 439

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           A L  +++G +  + + ++   V+  L   T +V +  + G L+ A       ++K +V 
Sbjct: 440 AHLALVNEGFYYLNQLMKH-FKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVV 498

Query: 364 TWNAMIGGLAMH 375
            W  ++    +H
Sbjct: 499 AWRVLLNACNIH 510



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 168/363 (46%), Gaps = 34/363 (9%)

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
           S ++ N    N++I+ + +  +   AR LF+EM+ +  ++++ ++ GY   G + E +++
Sbjct: 49  SYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKL 108

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           F  M     +P ++V + VL+ACA  G + +G+  H  + +  +     + ++LV MY+K
Sbjct: 109 FKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSK 168

Query: 344 CGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           C  +D+A +V E          + F +N+++  L   GR  +A+E+  +M  E +  D +
Sbjct: 169 CFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSV 228

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T+  V+  C     +  GLQ    + +  G+  +V     +VD+ G+ G +  A +V   
Sbjct: 229 TYVSVMGLCGQIRDLGLGLQVHAQLLKG-GLTFDVFVGSMLVDMFGKCGDVLSARKVFDG 287

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKT 518
           +    N  VW +L+ A  ++GE E                    +   +   M   G  +
Sbjct: 288 LQ-NRNVVVWTSLMTAYLQNGEFE--------------------ETLNLLSCMDREGTMS 326

Query: 519 NPGSSMIDVNGV--IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP-----NSSQVL 571
           N  +  + +N    +   R GD  H +V+++ +  + I+    +  YS      +S  V 
Sbjct: 327 NEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVF 386

Query: 572 FDI 574
           FD+
Sbjct: 387 FDM 389



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 45/350 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA +LK G   D +V   LV      +  +   A KVF+ +   NV VW S++ A L+
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFG--KCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQ 305

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + E    ++L S M    +  N+FT+  +  A +   A + G  +HA V K G+   V V
Sbjct: 306 NGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIV 365

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            ++ I MY+  GC++ +  +  D    D+I WNA                          
Sbjct: 366 GNALINMYSKCGCIDSSYDVFFDMRNRDIITWNA-------------------------- 399

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDE----ITWSAIIDGYTKDGYYKEALEVFNE 286
                MI G+++ G  ++A  LF +M    E    +T+  ++          E     N+
Sbjct: 400 -----MICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQ 454

Query: 287 -MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M+  K++P     +CV+A     G L++     + ++   +  D V    L++      
Sbjct: 455 LMKHFKVEPGLEHYTCVVAVLCRAGMLEEA---ENFMRTTQVKWDVVAWRVLLNACNIHR 511

Query: 346 RLDMAWKVFE---DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             ++  K+ E    M  +++ T+  ++  +    R+ D++ +  KM RE+
Sbjct: 512 NYNLGTKIAETILQMDPRDMGTY-TLLSNMYAKARSWDSVTMIRKMMRER 560


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/615 (36%), Positives = 332/615 (53%), Gaps = 55/615 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + + NV  W S++R  ++         L+ EM   +          + K   I
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRI 161

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +A K    +           DV V ++ I  Y   G +++AR++ D+    +V  W  +
Sbjct: 162 DDAKKLFDMIPEK--------DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTM 213

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA---------------- 249
           + GY K G ++ A++LF+   ++N  S+ AM+ G+ + GR +EA                
Sbjct: 214 VSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACN 273

Query: 250 ---------------RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
                          R +F  M ++DE TW+A+I  + + G   EAL +F  MQR+ +  
Sbjct: 274 EMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVAL 333

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               +  VL+ CASL +LD G  +H  + R+    D  + + L+ MY KCG L  A  +F
Sbjct: 334 NFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIF 393

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
                K+V  WN+MI G + HG  ++A+ +F  M    ++PD +TF  VLSAC+++G + 
Sbjct: 394 NRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVK 453

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G +    M+  Y ++P +EHY C+VDLLGRAG + EA E++  MPMEP+A VW ALLGA
Sbjct: 454 EGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGA 513

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H +++  E   + L ++EP+N               R  DV  +RK +  R IK  P
Sbjct: 514 CRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVIKF-P 572

Query: 521 GSSMIDVNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK 579
           G S I+V   +H F  GD  SHP+   I  ML+K+   L+  GY P+ S VL D+DEEEK
Sbjct: 573 GCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEK 632

Query: 580 ETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
             +  YHSE+LA+A+G +    G  IRV+KNLRVC DCHSA KLI+KV  R+II+RD  R
Sbjct: 633 THSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANR 692

Query: 640 YHHFRNGKCSCNDFW 654
           +HHF++G CSC DFW
Sbjct: 693 FHHFKDGSCSCKDFW 707



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 198/431 (45%), Gaps = 27/431 (6%)

Query: 79  RFSNFELALKVFNSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
           R  +   A KVF++   P   +  WN+++ A  E ++P   + L+ +M      P +   
Sbjct: 31  RIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM------PQR--- 81

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLC-GDVHVKSSGIQMYACFGCVNKARQILDDGS 195
            TV     I+   K G+   A  V + +   +V   +S ++ Y   G V +A ++  +  
Sbjct: 82  NTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP 141

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + +V+ W  +I G LK   I+ AK+LF    +K+      MI G+ + GR +EAR+LF+E
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDE 201

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQ 314
           M  ++  TW+ ++ GY K+G    A ++F  M +R+++       + +L      G + +
Sbjct: 202 MKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVS-----WTAMLMGYTQSGRMKE 256

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
              + + +    I    V    ++  +   G +  A  +FE MK ++  TWNAMI     
Sbjct: 257 AFELFEAMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFER 312

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
            G   +A+ LF +MQRE +  +  +   VLS CA    +D G Q    + +    D ++ 
Sbjct: 313 KGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVR-SEFDQDLY 371

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               ++ +  + G L  A+ + +    + +  +W +++    +HG    GE    +  +M
Sbjct: 372 VASVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQHG---LGEEALNVFHDM 427

Query: 495 EPQNRRCDDVA 505
                + D+V 
Sbjct: 428 CSSGVQPDEVT 438



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S  H +Q HA +++S   QD YV+  L+  +   +  +   A  +FN     +V +WNS
Sbjct: 349 ASLDHGRQVHARLVRSEFDQDLYVASVLITMYV--KCGDLVRAKGIFNRFLFKDVVMWNS 406

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    +H      ++++ +M     +P++ T+  V  ACS +   KEG ++   +    
Sbjct: 407 MITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMK--- 463

Query: 164 LCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG---YLKC 212
            C   +    GI+ YAC        G V++A ++++    + D I W AL+     ++K 
Sbjct: 464 -C--TYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKL 520

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
              E A E     + KN G Y  +   +A  GR+ +   L  ++N +
Sbjct: 521 DLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR 567



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 125/321 (38%), Gaps = 82/321 (25%)

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARK------------------------------- 251
           +  + ++  S  + IS + R G    ARK                               
Sbjct: 12  RMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDA 71

Query: 252 --LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI----------------- 292
             LF++M  ++ ++++ +I GY K+G   +A +VF+ M    +                 
Sbjct: 72  LLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVE 131

Query: 293 --------KPRKFVLS--CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
                    PR+ V+S   ++        +D    + D +       D V+ T ++  Y 
Sbjct: 132 EAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK----DVVVVTNMIGGYC 187

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITF 400
           + GRLD A ++F++MK++ VFTW  M+ G A +GR D A +LF  M      P+R  +++
Sbjct: 188 QVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM------PERNEVSW 241

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC--IVDLLGRAGYLAEAEEVISS 458
             +L     +G +    +    M   + +        C  ++   G AG +  A  +   
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAMPVKWIV-------ACNEMILQFGLAGEMHRARMMFEG 294

Query: 459 MPMEPNAAVWEALLGACRKHG 479
           M  E +   W A++    + G
Sbjct: 295 MK-ERDEGTWNAMIKVFERKG 314


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/655 (33%), Positives = 341/655 (52%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA   K GH ++ +V  +L+   A S       A  VF+ +   +   W +++    E++
Sbjct: 173 HACACKLGHDRNAFVGSSLID--AYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEND 230

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   ++ +S+M    +KPN F   +V KA     +   G  +H   VK     + HV  
Sbjct: 231 IPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGG 290

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDK 228
           + + MYA  G +  AR + +     DVI W+ LI  Y +    E A E+F    +S+   
Sbjct: 291 ALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVP 350

Query: 229 NTGSY-----------------------------------NAMISGFARFGRFEEARKLF 253
           N  S                                    NA++  +A+    E + ++F
Sbjct: 351 NEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIF 410

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             + D +E++W+ II GY + G+ ++AL VF EM+   +   +   S VL ACA+  ++ 
Sbjct: 411 RSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIK 470

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
             + IH  +++++   D ++  +L+D YAKCG +  A KVFE +   +V +WNA+I G A
Sbjct: 471 HTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYA 530

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           +HGRA DA+ELF +M +   +P+ +TF  +LS C   G++++GL     M   + I P +
Sbjct: 531 LHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSM 590

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           +HY CIV LLGRAG L +A + I  +P  P+  VW ALL +C  H  V  G+   + +LE
Sbjct: 591 DHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLE 650

Query: 494 MEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EPQ+                 D VA +RK M+  G+K   G S +++ G +H F  G  
Sbjct: 651 IEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSA 710

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            HP ++ I  ML+ +  K   EGY P+ + VL D+DEEEK      HSE+LA+A+G   T
Sbjct: 711 DHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMT 770

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR++KNLR C DCH+  K+ISK+ +R+I+VRD  R+HHF  G CSC D+W
Sbjct: 771 PPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 209/486 (43%), Gaps = 51/486 (10%)

Query: 50  KQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           +  HA +++ G     D + +  L+  +A  +      A ++F+ + + N+  + ++++ 
Sbjct: 67  RAVHARVVQRGGVAQLDTFCANVLLNLYA--KLGPLAAARRLFDGMPERNMVSFVTLVQG 124

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                       L+  +     + N F   T+ K     +A      +HA   K G   +
Sbjct: 125 YALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRN 184

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
             V SS I  Y+  G V+ AR + D     D + W A++  Y +    E A   F     
Sbjct: 185 AFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRM 244

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K+  D       A++  +A+ G  E+
Sbjct: 245 AGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIED 304

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F  +   D I WS +I  Y +    ++A E+F  M R  + P +F LS VL ACA+
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACAN 364

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +  LD G  IH+ V +     +  +G AL+D+YAKC  ++ + ++F  ++     +WN +
Sbjct: 365 VAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTI 424

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ-MY 427
           I G    G A+DA+ +F +M+   +   ++TF+ VL ACA+   I   +Q  + +++  +
Sbjct: 425 IVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTF 484

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE----VEF 483
             D  V     ++D   + G + +A +V  S+ ++ +   W A++     HG     +E 
Sbjct: 485 NNDTIV--CNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALEL 541

Query: 484 GERLGK 489
             R+ K
Sbjct: 542 FNRMNK 547



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 143/327 (43%), Gaps = 33/327 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H +++K G+  + +V   L+  +A  R  N E +L++F S+   N   WN+++    
Sbjct: 372 QQIHNLVIKLGYESELFVGNALMDVYAKCR--NMENSLEIFRSLRDANEVSWNTIIVGYC 429

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       +S++ EM        + T+ +V +AC+ T + K  VQ+H+ + K+    D  
Sbjct: 430 QSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTI 489

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           V +S I  YA  GC+  A ++ +   + DV+ WNA+I GY   G    A ELF    KS 
Sbjct: 490 VCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSD 549

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              N  ++ A++S     G   +   LFN M     I      ++ I+    + G   +A
Sbjct: 550 TKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDA 609

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------ 334
           L+   ++      P   V   +L++C           +H +V       + VL       
Sbjct: 610 LKFIGDIPS---TPSPMVWRALLSSCV----------VHKNVALGKFSAEKVLEIEPQDE 656

Query: 335 ---TALVDMYAKCGRLDMAWKVFEDMK 358
                L +MYA  G LD    + + M+
Sbjct: 657 TTYVLLSNMYAAAGILDQVALLRKSMR 683


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 310/569 (54%), Gaps = 41/569 (7%)

Query: 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           VWN+++   ++         L+  MV     P++FT+ ++  AC+       G  VH   
Sbjct: 263 VWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQF 322

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +                           R   D   ++ +   NAL+  Y K G I  A 
Sbjct: 323 I---------------------------RLQPDFVPEAALPVNNALVTLYSKSGKIAVAT 355

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           ++F S   K+  S+N ++SG+   G  + A ++F EM  K E++W  ++ GY   G  ++
Sbjct: 356 KIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAED 415

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL++FN+M+ + +KP  +  +  +AAC  LGAL  G  +H H+ +         G AL+ 
Sbjct: 416 ALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLT 475

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYA+CG +  A  VF  M   +  +WNAMI  L  HG   +A+ELF +M  + + PDRI+
Sbjct: 476 MYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRIS 535

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +L+AC HAG++D G Q    M++ +GI P  +HY  ++DLLGRAG + EA ++I +M
Sbjct: 536 FLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTM 595

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P EP  A+WEA+L  CR +G++E G      L +M P++               R  D A
Sbjct: 596 PFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAA 655

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           ++RKLM++RG+K  PG S I+V   +H F  GD  HP   E+Y  L+ +  K++  GY P
Sbjct: 656 RVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVP 715

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           ++   L D+   EKE     HSE+LA++FG +    GAT+ V+KNL++C DCH+A   +S
Sbjct: 716 DTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMS 775

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +   R+I+VRD  R+HHF++G+CSC ++W
Sbjct: 776 RAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 186/401 (46%), Gaps = 19/401 (4%)

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITE--A 148
           V + +  + N+++ A    +     +S++  ++  D   +P+ +++ ++  A       A
Sbjct: 117 VARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLA 176

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICWNAL 205
                Q+H  V K G    + V ++ I +Y      G    AR++LD+  + D + W  +
Sbjct: 177 VSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTI 236

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DE 261
           + G+++ GD+  A+  F+    +    +NAMISG+ + G   EA +LF  M  K    DE
Sbjct: 237 VVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDE 296

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA---ACASLGALDQGIWI 318
            T+++++      G++     V  +  R  ++P  FV    L    A  +L +    I +
Sbjct: 297 FTFTSLLSACANAGFFLHGKSVHGQFIR--LQP-DFVPEAALPVNNALVTLYSKSGKIAV 353

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
              +  +    D V    ++  Y + G LD A ++F++M  K   +W  M+ G    G A
Sbjct: 354 ATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLA 413

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           +DA++LF +M+ E ++P   T+A  ++AC   G +  G Q   ++ Q  G +        
Sbjct: 414 EDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQC-GFEASNSAGNA 472

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           ++ +  R G + +A  V   MP   ++  W A++ A  +HG
Sbjct: 473 LLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALGQHG 512


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 296/468 (63%), Gaps = 16/468 (3%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N+LI  Y+ CGD+  A+++      K+  S+ ++++ ++R      A ++F     KD +
Sbjct: 186 NSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMV 245

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
            W+A++ GY ++    +ALE F +M    +   +  L+  ++ACA LGA+ + +WI +  
Sbjct: 246 AWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIA 305

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            R+ +  + V+G+ LVDMYAKCG +D A +VFE M+ K V+T+++MI GLA HGRA+DAI
Sbjct: 306 DRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAI 365

Query: 383 ELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
            LF  M +R  + P+ +TF  VL+AC+HAGM+  G      M+  YGI P  +HY C+VD
Sbjct: 366 ALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVD 425

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--- 498
           LLGRAG + EA +++ SM +EP+  VW ALLGACR HG  +  +   + L ++EP+    
Sbjct: 426 LLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGN 485

Query: 499 -----------RRCDDVAKMRKLMKERGIKTNPG-SSMIDVNGVIHEFRTGDGSHPQVKE 546
                         D+V+K+RKLM+ RG+K +P  SS    +G++H+F  GD +HP + E
Sbjct: 486 YVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHE 545

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I   L ++  +LK+ GY P  S V++++ +EEKE     HSEKLA++FG +  +  ++IR
Sbjct: 546 IKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLESRSSIR 605

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KNLR+CEDCH   +L+SKV   +IIVRD +R+HHFR+G+CSC  FW
Sbjct: 606 IVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 145/352 (41%), Gaps = 46/352 (13%)

Query: 52  AHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           AHAV L  G F  H +V  +L+  +      +   A KV + +   +V  W S++ A   
Sbjct: 168 AHAVSLLLGGFDKHRFVENSLIGAYVAC--GDVGAARKVLDEMVVKDVISWTSIVAAYSR 225

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                R +    E+  +    +   +  +    +      + ++    +   G+  D   
Sbjct: 226 S----RDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVS 281

Query: 171 KSSGIQMYACFGCVNKA---RQILD-DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            +  I   A  G V +A   ++I D  G   +V+  + L+D Y KCG I+ A  +F+  +
Sbjct: 282 LTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQ 341

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +KN  +Y++MI G A  GR  +A  LFN+M                              
Sbjct: 342 EKNVYTYSSMIVGLASHGRANDAIALFNDM------------------------------ 371

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKCG 345
           ++R  ++P       VL AC+  G + +G +    +K R  I   A   T +VD+  + G
Sbjct: 372 VRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAG 431

Query: 346 RLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQREKM 393
            +  A  + + M ++     W A++G   +HG    A  A +  FK++ E +
Sbjct: 432 LVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGI 483


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/721 (31%), Positives = 365/721 (50%), Gaps = 118/721 (16%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR--- 106
           K+ H +ILK+    + ++S  L+   A  +  N   A  VF+ + +PN+F WN++L    
Sbjct: 25  KKLHCLILKTIKQPETFLSNNLIT--AYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYS 82

Query: 107 --ACLEHNE------PWR--------------------VISLYSEMV-GVDSKPNKFTYP 137
               L   +      P+R                     + +Y  M+       N+ T+ 
Sbjct: 83  KLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFS 142

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T+   CS       G Q++  ++K G   DV V S  + MY   G +  A++  D+  + 
Sbjct: 143 TMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPER 202

Query: 198 DV-------------------------------ICWNALIDGYLKCGDIEGAKELFKSTK 226
           +V                               I W  +I G ++ G    A ++F+  +
Sbjct: 203 NVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMR 262

Query: 227 --------------------------DKNTGSY-------------NAMISGFARFGRFE 247
                                      K   +Y             +A++  +++    +
Sbjct: 263 LAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIK 322

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            A  +F  M  K+ I+W+A++ GY ++G+ +EA+++F EMQR+ ++P  F L  V+++CA
Sbjct: 323 SAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA 382

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L +L++G   H     + +     +  AL+ +Y KCG  + + ++F +M +++  +W A
Sbjct: 383 NLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTA 442

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           ++ G A  G+A++ I LF +M    ++PD +TF  VLSAC+ AG++++GLQ    M + +
Sbjct: 443 LLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEH 502

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P V+H  CI+DLLGRAG L EA   I++MP  P+   W  LL +CR HG++E G+  
Sbjct: 503 GIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWA 562

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L+ +EPQN               + D VA++R+ M+++ ++  PG S I   G +H 
Sbjct: 563 ADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHV 622

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F   D S P + +IY  L+K+  K+  EGY P+ S VL D++E EK     +HSEKLAIA
Sbjct: 623 FSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIA 682

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I   PG  IRVIKNLRVC DCH+ATK ISK+ +R+I+VRD VR+H F++G CSC DF
Sbjct: 683 FGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDF 742

Query: 654 W 654
           W
Sbjct: 743 W 743



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 66/399 (16%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y ++ K C  ++   +  ++H  ++K     +  + ++ I  Y   G +  A  + D   
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + ++  WN ++  Y K G +   +++F     ++  S+N  ISG+A +G   +A +++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M                     K+A    N          +   S +L  C+    +D G
Sbjct: 128 M--------------------LKDAAMNLN----------RITFSTMLILCSKFRCVDLG 157

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAK-------------------------------C 344
             I+  + +     D  +G+ LVDMY K                               C
Sbjct: 158 RQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRC 217

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G ++ + ++F  +K ++  +W  MI GL  +G   +A+++F +M+      D+ TF  VL
Sbjct: 218 GMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVL 277

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC     +  G Q   Y+ +    D  V     +VD+  +   +  AE V   MP + N
Sbjct: 278 TACGSLLALGEGKQIHAYVIRTDHKD-NVFVGSALVDMYSKCRSIKSAETVFKRMP-QKN 335

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
              W A+L     +G+  F E   KI  EM+      DD
Sbjct: 336 VISWTAMLVG---YGQNGFSEEAVKIFFEMQRNGVEPDD 371


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 302/573 (52%), Gaps = 75/573 (13%)

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P+   W +++ A ++       I +         +P+ FT   V  AC+     + G  V
Sbjct: 4   PSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAV 63

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
            A                             ARQ  ++G    V    A +D Y+KCG++
Sbjct: 64  WA----------------------------AARQ--EEGVAESVFVATAALDLYVKCGEM 93

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           E                               +AR +F+EM ++D + W A++ GY  +G
Sbjct: 94  E-------------------------------KARSVFDEMKNRDAVAWGAMVGGYASNG 122

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           + +EAL++F  MQ +  KP  + +   L+AC  LGALD G      V  + +  + VLGT
Sbjct: 123 HPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGT 182

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+DMYAKCG    AW VF+ M  +++  WNAMI GL M G    A  L  +M++  ++ 
Sbjct: 183 ALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKL 242

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           +  TF  +L +C H G+++ G Q    M  +Y I P +EHYGC+VDL  RAG L EA ++
Sbjct: 243 NDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQL 302

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RC 501
           I  MPM  NA VW ALLG C+ H   +  E   K L+ +EP N               R 
Sbjct: 303 IGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRW 362

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           +D AK+R  MK +GI+  P SS ++++G +H+F  GD SHP   +IY  L ++  ++K  
Sbjct: 363 EDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAM 422

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY P +  V+FD++ EEKE    +HSEK+AIAF  I T+PG TIRV KNLRVC DCHSA 
Sbjct: 423 GYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAI 482

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLIS++  R+I+VRD  R+H FR+G CSCND+W
Sbjct: 483 KLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 37/309 (11%)

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           VKC         E A  VF+ +   +   W +++     +  P   + L+  M    +KP
Sbjct: 88  VKC------GEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKP 141

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + +T      AC+   A   G Q    V  + + G+  + ++ I MYA  G  ++A  + 
Sbjct: 142 DCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVF 201

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFE 247
               + D+I WNA+I G    G  + A  L     KS    N  ++  ++      G   
Sbjct: 202 QQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVN 261

Query: 248 EARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
           + R+ F+ M     I+     +  ++D +++ G  +EA ++  +M              +
Sbjct: 262 DGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMP-------------M 308

Query: 303 LAACASLGALDQGIWIH------DHVKRNSICVDAVLG---TALVDMYAKCGRLDMAWKV 353
           LA     GAL  G  IH      +H  +  I ++         L ++Y+  GR + A K+
Sbjct: 309 LANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKL 368

Query: 354 FEDMKMKEV 362
             +MK K +
Sbjct: 369 RLEMKAKGI 377


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/659 (33%), Positives = 333/659 (50%), Gaps = 57/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            +Q HA   K G   +  + G L+  +A  + S+ E AL  F      NV +WN +L A  
Sbjct: 392  QQLHAYTTKLGFASNDKIEGALLNLYA--KCSDIETALNYFLETEVENVVLWNVMLVAYG 449

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLCGDV 168
              ++      ++ +M   +  PN++TYP++ K C I   D E G Q+H+ ++K     + 
Sbjct: 450  LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC-IRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +V S  I MYA  G ++ A  IL   +  DV+ W  +I GY +    + A   F+   D+
Sbjct: 509  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 229  NTGS---------------------------------------YNAMISGFARFGRFEEA 249
               S                                        NA+++ +++ G  EEA
Sbjct: 569  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628

Query: 250  RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
               F +    D I W+A++ G+ + G  +EAL VF  M R+ I    F     + A +  
Sbjct: 629  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASET 688

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
              + QG  +H  + +     +  +  A++ MYAKCG +  A K F ++ MK   +WNAMI
Sbjct: 689  ANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMI 748

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
               + HG   +A++ F +M    +RP+ +T   VLSAC+H G++D+G++    M   YG+
Sbjct: 749  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGL 808

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             P+ EHY C+VD+L RAG L+ A++ I  MP+EP+A VW  LL AC  H  +E GE    
Sbjct: 809  APKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAH 868

Query: 490  ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             LLE+EP++              R+ D     R+ MKE+G+K  PG S I+V   IH F 
Sbjct: 869  HLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 928

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD +HP   EI+   K + ++    GY  +   +L ++ +E+K+     HSEKLAI+FG
Sbjct: 929  VGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFG 988

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             ++      I V+KNLRVC DCH   K +SKV  R+IIVRD  R+HHF  G CSC D+W
Sbjct: 989  LLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 207/491 (42%), Gaps = 98/491 (19%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           K + S    ++ H+ ILK G   +  +S  L+  +      + + ALKVF+ + +  +F 
Sbjct: 79  KTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFK--GDLDGALKVFDEMPERTIFT 136

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV-QVHAHV 159
           WN +++     +   +V  L+  MV  +  PN+ T+  V +AC       + V Q+HA +
Sbjct: 137 WNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARI 196

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +  GL                               KS ++C N LID Y          
Sbjct: 197 IYQGL------------------------------GKSTIVC-NPLIDLY---------- 215

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                +R G  + AR++F+ +  KD  +W A+I G +K+    E
Sbjct: 216 ---------------------SRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVE 254

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+ +F +M    I P  +  S VL+AC  + +L+ G  +H  V +     D  +  ALV 
Sbjct: 255 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 314

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           +Y   G L  A  +F +M  ++  T+N +I GL+  G  + A+ELF +MQ + + PD  T
Sbjct: 315 LYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNT 374

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQM---------------------------YGIDPE 432
            A ++ AC+  G +  G Q   Y  ++                           Y ++ E
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETE 434

Query: 433 VEH---YGCIVDLLGRAGYLAEAEEVISSMPME---PNAAVWEALLGACRKHGEVEFGER 486
           VE+   +  ++   G    L  +  +   M +E   PN   + ++L  C + G++E GE+
Sbjct: 435 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494

Query: 487 LGKILLEMEPQ 497
           +   +++   Q
Sbjct: 495 IHSQIIKTSFQ 505



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 142/303 (46%), Gaps = 23/303 (7%)

Query: 205 LIDGYLKC-GDI-EGAK---ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           L++G LK  G + EG K   ++ K   D N      ++  +   G  + A K+F+EM ++
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPER 132

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC-ASLGALDQGIWI 318
              TW+ +I          +   +F  M  + + P +   S VL AC     A D    I
Sbjct: 133 TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQI 192

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  +    +    ++   L+D+Y++ G +D A +VF+ + +K+  +W AMI GL+ +   
Sbjct: 193 HARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECE 252

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV----E 434
            +AI LF  M    + P    F+ VLSAC       + +++L   +Q++G+  ++    +
Sbjct: 253 VEAIRLFCDMYVLGIMPTPYAFSSVLSAC-------KKIESLEIGEQLHGLVLKLGFSSD 305

Query: 435 HYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
            Y C  +V L    G L  AE + S+M  + +A  +  L+    + G   +GE+  ++  
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCG---YGEKAMELFK 361

Query: 493 EME 495
            M+
Sbjct: 362 RMQ 364



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 118/279 (42%), Gaps = 61/279 (21%)

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-GALDQGIWIHDH 321
           +++AI    ++D  ++E     + ++   I+P    L  +L  C    G+LD+G  +H  
Sbjct: 36  SFTAISVSISEDESFQE--NGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ 93

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + +     +A L   L+D Y   G LD A KVF++M  + +FTWN MI  LA    +   
Sbjct: 94  ILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKV 153

Query: 382 IELFFKMQREKMRPDRITFACVLSAC------------AHAGMIDRGLQALTYMQQMYGI 429
             LF +M  E + P+  TF+ VL AC             HA +I +GL   T +      
Sbjct: 154 FCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIV-----C 208

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME--------------------------- 462
           +P       ++DL  R G++  A  V   + ++                           
Sbjct: 209 NP-------LIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 463 -------PNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
                  P    + ++L AC+K   +E GE+L  ++L++
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 307/540 (56%), Gaps = 20/540 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+  +Y T+  +C     D +G +    V       DV   ++ +   +  G   +A  +
Sbjct: 75  PDTVSYNTLL-SCHFACGDIDGAR---RVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAM 130

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG-SYNAMISGFARFGRFEEA 249
                  + + WNA++      GD+  A++LF++  +K     + AM+SG+   G  ++A
Sbjct: 131 FRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 190

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVLSCVLAACAS 308
            + F  M  ++ ++W+A++ GY K+    +AL VF  M  D I +P    LS VL  C++
Sbjct: 191 MEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSN 250

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L AL  G  +H    +  +  +  +GT+L+ MY KCG L+ A KVF++M  K++  WNAM
Sbjct: 251 LSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAM 310

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G A HG    AI+LF KM+ E + PD IT   VL+AC H G+ D G+Q    MQ+ Y 
Sbjct: 311 ISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYK 370

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P+++HY C+VDLL RAG L  A  +I SMP EP+ + +  LL ACR +  +EF E   
Sbjct: 371 IEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAA 430

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
           + L+E +PQN               +  DV+++R+ MK+  +   PG S +++ GV HEF
Sbjct: 431 RKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEF 490

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
           R+ D  HPQ+  I+  L ++   +K  GY P+    L D+++  K      HSEKLAIAF
Sbjct: 491 RSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAF 550

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G I+T PG T+R+ KNLR+C DCH+A KLISK+  R+II+RD  R+HHFR G CSC D+W
Sbjct: 551 GLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 46/303 (15%)

Query: 213 GDIEGAKELFKSTKDKNTGSYNAMISGFARF----------------------------- 243
           GD+ GA+E F ST+ K T +YN +++G+A+                              
Sbjct: 26  GDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLS 85

Query: 244 -----GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKF 297
                G  + AR++F+ M  KD  +W+ ++ G +K+G  +EA  +F  M  R+ +     
Sbjct: 86  CHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAM 145

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           V +  LA    +GA +      D  +      DA+L TA+V  Y   G +  A + F  M
Sbjct: 146 VAA--LACSGDMGAAE------DLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAM 197

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITFACVLSACAHAGMIDRG 416
            ++ + +WNA++ G   + RADDA+ +F  M  + + +P+  T + VL  C++   +  G
Sbjct: 198 PVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFG 257

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
            Q   +  ++  +   V     ++ +  + G L +A +V   M  + +   W A++    
Sbjct: 258 RQVHQWCMKL-PLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIVAWNAMISGYA 315

Query: 477 KHG 479
           +HG
Sbjct: 316 QHG 318



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTV 139
           N + A++ F ++   N+  WN+V+   ++++     + ++  MV  DS  +PN  T  +V
Sbjct: 186 NVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVE-DSIVQPNASTLSSV 244

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
              CS   A   G QVH   +K  L  +V V +S + MY   G +N A ++ D+ S  D+
Sbjct: 245 LLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDI 304

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNE 255
           + WNA+I GY + G    A +LF+  KD+       +  A+++     G  +   + F  
Sbjct: 305 VAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFET 364

Query: 256 MNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           M +  +I      +S ++D   + G  + A+ + + M     +P       +L AC
Sbjct: 365 MQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM---PFEPHPSAYGTLLTAC 417


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/651 (34%), Positives = 345/651 (52%), Gaps = 99/651 (15%)

Query: 8   TDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV 67
           T L    KP  +S +    S F++K+ + +L  K   S QHLKQ    IL++G  Q    
Sbjct: 13  TSLHFLSKPLHLSTS----SHFTKKSCIFLL--KNCKSMQHLKQIQTQILRTGFHQSGDT 66

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
               + C  +    N   A ++FN +  P +F++N V++A  ++    + + L+ ++   
Sbjct: 67  LNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREE 126

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
              P+ FTYP VFKA       +EG +V+  VVK+GL  D +V +S + MYA  G V   
Sbjct: 127 GLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNL 186

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY-------------- 233
           RQ+ ++  + DV+ WN LI GY+KC   E A ++F+  + +++                 
Sbjct: 187 RQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIA 246

Query: 234 -------------------------NAMISGFARFGRFEEARKLFNEMNDK--------- 259
                                    NA++  + + G    AR++FN+M  K         
Sbjct: 247 LKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMV 306

Query: 260 ----------------------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
                                 D + W+A+I+GY +   + +A+ +F EMQ  ++ P +F
Sbjct: 307 SGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRF 366

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            L  +L  CA LG L+QG WIH ++  N I +DAV+GTAL++MYAKCG ++ + ++F  +
Sbjct: 367 TLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGL 426

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
           K K+  +W ++I GLAM+G+   A+ELF +M +  ++PD ITF  VLSAC+H G+++ G 
Sbjct: 427 KEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGR 486

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV---WEALLGA 474
           +    M  +Y I+P++EHYGC++DLLGRAG L EAEE+I   P   N  +   + ALL A
Sbjct: 487 KHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSA 546

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR HG VE GER+ K L+ +E  +               R +DV K+R+ MK+ G+K  P
Sbjct: 547 CRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVP 606

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL------KMEGYSP 565
           G S ++VNG++HEF  GD SHP+++EIY ML  I + L      +MEG  P
Sbjct: 607 GCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPLLGLDENEMEGEIP 657


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/662 (33%), Positives = 335/662 (50%), Gaps = 84/662 (12%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP------- 96
           ++ Q  KQ H   L SG   D  V  +L+  H   +F + + A  VF+ + +P       
Sbjct: 88  SALQTGKQMHCFALVSGLGLDSVVLSSLL--HMYVQFDHLKDARNVFDKLPQPGVVTSSA 145

Query: 97  ----------------------------NVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
                                       N+  WN ++            + ++  M    
Sbjct: 146 LISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
            KP+  +  +V  A    +    G+Q+H +V+K GL  D  V S                
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVS---------------- 249

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
                          ALID Y KC        +F    + + G+ NA+++G +R G  + 
Sbjct: 250 ---------------ALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDN 294

Query: 249 ARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           A ++F +    D + ++W+++I   +++G   EALE+F EMQ + +KP    + C+L AC
Sbjct: 295 ALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPAC 354

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
            ++ AL  G   H    RN I  D  +G+AL+DMYAKCGR+  +   F+ M  + + +WN
Sbjct: 355 GNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWN 414

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +++ G AMHG+  +AI +F  MQR   +PD ++F CVLSAC   G+ + G      M + 
Sbjct: 415 SLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRN 474

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           +G++  +EHY C+V LLGR+G L EA  +I  MP EP++ VW ALL +CR H  V+ GE 
Sbjct: 475 HGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEI 534

Query: 487 LGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             K + E+EP+N                  +V  +R +M+ RG+K NPG S I++   +H
Sbjct: 535 AAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVH 594

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
               GD SHPQ+ +I   L K+  ++K  GY P++  VL D++E++KE     HSEKLA+
Sbjct: 595 MLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAV 654

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
             G +NT PG  ++VIKNLR+C DCH+  K IS   KR+I VRD  R+H F+ G CSC D
Sbjct: 655 VLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGD 714

Query: 653 FW 654
           +W
Sbjct: 715 YW 716



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 173/401 (43%), Gaps = 70/401 (17%)

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
           VI ++S M+     P+    PTV K C+   A + G Q+H   + +GL  D  V SS + 
Sbjct: 58  VIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLH 117

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGS 232
           MY  F  +  AR + D   +  V+  +ALI  + + G ++  KELF  T+D     N  S
Sbjct: 118 MYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVS 177

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           +N MISGF R                                G Y +A+ +F  M  + +
Sbjct: 178 WNGMISGFNR-------------------------------SGSYLDAVLMFQNMHLEGL 206

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC-------- 344
           KP    +S VL A   L     GI IH +V +  +  D  + +AL+DMY KC        
Sbjct: 207 KPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSG 266

Query: 345 -----------------------GRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRAD 379
                                  G +D A +VF+  K  +  V +W +MI   + +G+  
Sbjct: 267 VFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDM 326

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A+ELF +MQ E ++P+ +T  C+L AC +   +  G  A  +  +  GI  +V     +
Sbjct: 327 EALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLR-NGIFNDVYVGSAL 385

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +D+  + G +  +      MP   N   W +L+     HG+
Sbjct: 386 IDMYAKCGRMLASRLCFDMMP-NRNLVSWNSLMAGYAMHGK 425



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 37/259 (14%)

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           K  I+    I  ++K  ++   + VF+ M    I P   VL  V+  CA+L AL  G  +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM--------------------- 357
           H     + + +D+V+ ++L+ MY +   L  A  VF+ +                     
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 358 -KMKEVF-------------TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
            + KE+F             +WN MI G    G   DA+ +F  M  E ++PD  + + V
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L A     M   G+Q   Y+ +  G+ P+      ++D+ G+    +E   V + M  E 
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQ-GLGPDKFVVSALIDMYGKCACASEMSGVFNEMD-EV 274

Query: 464 NAAVWEALLGACRKHGEVE 482
           +     AL+    ++G V+
Sbjct: 275 DVGACNALVTGLSRNGLVD 293


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 314/587 (53%), Gaps = 80/587 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWR---VISLYSEMVGVDSK-PNKFTYPTVFK 141
           A  +F+ + +P  F +NS++RA             + +Y  M+   S  PN FT     K
Sbjct: 80  ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS+  A  EG Q+H+   + GL    +V++                             
Sbjct: 140 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQT----------------------------- 170

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
              L++ Y KC ++  A+ +F                                 + DK+ 
Sbjct: 171 --GLLNLYAKCEEVALARTVFDGM------------------------------VGDKNL 198

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
             WSA+I GY++ G   EAL +F EMQ   + P +  +  V++ACA  GALD G W+H  
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAF 258

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + R  I VD  L TAL+DMYAKCG ++ A  VF+ M  ++   W+AMI GLA+HG  + A
Sbjct: 259 IDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVA 318

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           ++LF +M   K+RP+ +TF  VLSACAH+G+++ G +  + MQ++ GI P +E+YGC+VD
Sbjct: 319 LKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQEL-GIKPSMENYGCMVD 377

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP----- 496
           L  R+  L EA   ++ M + PN+ +W  LL A +     +  +   K LLE+EP     
Sbjct: 378 LFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPEN 437

Query: 497 ---------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                     N + D V+ MRK MKE  +    G S I++NG +H+F   D SHP++KEI
Sbjct: 438 YVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEI 497

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
            L+L++I +++   G+ P ++ VL D+ EEEKE A   HSE+LAIA+G + T     IRV
Sbjct: 498 RLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLAIAYGLLKTKAPHVIRV 557

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +KNLR C DCH   K++SK + R+IIVRDRVR+H F  G CSC DFW
Sbjct: 558 VKNLRFCPDCHEVAKIVSKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS-VHKPNVFVWNSVLRAC 108
           +Q H+   + G     YV   L+  +A  +     LA  VF+  V   N+  W++++   
Sbjct: 151 RQLHSQAFRRGLEPSPYVQTGLLNLYA--KCEEVALARTVFDGMVGDKNLAAWSAMIGGY 208

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                    + L+ EM   D  P++ T  +V  AC+   A   G  VHA + + G+  D+
Sbjct: 209 SRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDL 268

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD- 227
            + ++ I MYA  G + +A+ + D  ++ D   W+A+I G    G +E A +LF    + 
Sbjct: 269 ELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLEL 328

Query: 228 ---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEI-TWSAIIDGYTKDGYYKEA 280
               N  ++  ++S  A  G   E R+ ++ M +   K  +  +  ++D + +     EA
Sbjct: 329 KVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEA 388

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAA 305
                 M    I P   +   +L A
Sbjct: 389 YSFVTGMA---IPPNSVIWRTLLVA 410


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/572 (36%), Positives = 321/572 (56%), Gaps = 51/572 (8%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           +  TY  + K CS   A +EG +VH H+   G    + V ++ + MY  F  + +A  + 
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 192 DDGSKSDVICWNALIDGY--------LKCGDI---EGAKE-------------------- 220
           D+  + +V+ W  +I  Y        LKC  +   EG +                     
Sbjct: 114 DEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQ 173

Query: 221 ----LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
               + K+  + +    +A+I  ++++   + A  +F+EM  +D + W++II G+ ++  
Sbjct: 174 LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSD 233

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EAL +F  M+R      +  L+ VL AC  L  L+ G  +H HV +     D +L  A
Sbjct: 234 GNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFD--QDLILNNA 291

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY KCG L+ A   F  M  K+V +W+ M+ GLA +G +  A+ELF  M+    RP+
Sbjct: 292 LIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPN 351

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            IT   VL AC+HAG++++G      M++++G+DP  EHYGC++DLLGRAG L EA ++I
Sbjct: 352 YITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLI 411

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
             M  EP++  W  LLGACR H  V+      K ++E+EP++              +R +
Sbjct: 412 HEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWE 471

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DVA++RK M  RGI+  PG S I+V+  IH F  GD SHP+++EI   L  +IE++   G
Sbjct: 472 DVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVG 531

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+++ VL D++ E+KE + +YHSEKLAI FG +N     T+R+ KNLR+C DCH   K
Sbjct: 532 YVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAK 591

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++S++  R I++RD +RYHHF++G CSC D+W
Sbjct: 592 VVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 175/379 (46%), Gaps = 53/379 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q  K+ H  I   G+    +V  TL+  +   +F+  E A  +F+ + + NV  W +++ 
Sbjct: 72  QEGKRVHEHIFCKGYEPKMFVVNTLLNMYV--KFNLLEEAEDLFDEMPERNVVSWTTMIS 129

Query: 107 AC---LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           A    L       +I ++ E V    +PN FTY +V +AC      +   Q+H  ++K G
Sbjct: 130 AYSNKLNDKALKCLILMFREGV----RPNMFTYSSVLRACDGLPNLR---QLHCGIIKTG 182

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           L  DV V+S+ I +Y+ +  ++ A  + D+    D++ WN++I G+ +  D   A  LFK
Sbjct: 183 LESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFK 242

Query: 224 STK-------------------------------------DKNTGSYNAMISGFARFGRF 246
             K                                     D++    NA+I  + + G  
Sbjct: 243 RMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSL 302

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E+A   F+ M +KD I+WS ++ G  ++GY ++ALE+F  M+    +P    +  VL AC
Sbjct: 303 EDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFAC 362

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           +  G +++G W +    +    VD        L+D+  + GRLD A K+  +M+ + +  
Sbjct: 363 SHAGLVEKG-WYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSV 421

Query: 364 TWNAMIGGLAMHGRADDAI 382
           TW  ++G   +H   D AI
Sbjct: 422 TWRTLLGACRVHRNVDLAI 440



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A+   + M+R  +       S ++  C++ GA+ +G  +H+H+          +   L++
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY K   L+ A  +F++M  + V +W  MI   + +   D A++    M RE +RP+  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 400 FACVLSAC--------AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
           ++ VL AC         H G+I  GL++  +++              ++D+  +   L  
Sbjct: 158 YSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS------------ALIDVYSKWSDLDN 205

Query: 452 AEEVISSMPMEPNAAVWEALLGA 474
           A  V   MP   +  VW +++G 
Sbjct: 206 ALGVFDEMPTR-DLVVWNSIIGG 227


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 315/554 (56%), Gaps = 53/554 (9%)

Query: 154  QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
            QVH     +G+  ++ V +  +  Y+ +  ++ A  + D     D + W+ ++ G+ K G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 214  D--------------------------IEGAKEL-------------FKSTKDKNTGSYN 234
            D                          I   ++L             +K   D +     
Sbjct: 816  DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 875

Query: 235  AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
            A++  + +    E+AR LF++M ++D +TW+ +I GY + G   E+L +F++M+ + + P
Sbjct: 876  ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 935

Query: 295  RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
             K  +  V+ ACA LGA+ +   I D+++R    +D +LGTA++DM+AKCG ++ A ++F
Sbjct: 936  DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995

Query: 355  EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
            + M+ K V +W+AMI     HG+   A++LF  M R  + P++IT   +L AC+HAG+++
Sbjct: 996  DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055

Query: 415  RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             GL+  + M + Y +  +V+HY C+VDLLGRAG L EA ++I SM  E +  +W A LGA
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGA 1115

Query: 475  CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
            CR H +V   E+    LLE++PQN               R +DVAK+R LM +R +K  P
Sbjct: 1116 CRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIP 1175

Query: 521  GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
            G + I+V+   H+F  GD +HP+ KEIY MLK +  KL++ GY P+++ VL D+DEE K 
Sbjct: 1176 GWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKI 1235

Query: 581  TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                 HSEKLAIAFG I T     IR+IKNLRVC DCH+  KL+S +  R IIVRD  R+
Sbjct: 1236 GILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRF 1295

Query: 641  HHFRNGKCSCNDFW 654
            HHF+ G CSC D+W
Sbjct: 1296 HHFKEGACSCGDYW 1309



 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/512 (36%), Positives = 285/512 (55%), Gaps = 53/512 (10%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           QVHA    +G+  ++ V +  I  Y+ +  ++ A  + D     D + W+ ++ G+ K G
Sbjct: 80  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139

Query: 214 D--------------------------IEGAKEL-------------FKSTKDKNTGSYN 234
           D                          I   ++L             +K   D +     
Sbjct: 140 DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 199

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           A++  + +    E+AR LF++M ++D +TW+ +I GY + G   E+L +F +M+ + + P
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 259

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
            K  +  V+ ACA LGA+ +   I D+++R    +D +LGTA++DMYAKCG ++ A ++F
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           + M+ K V +W+AMI     HG+   A++LF  M    M PD+IT A +L AC+HAG+++
Sbjct: 320 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            GL+  + M + Y +  +V+HY C+VDLLGRAG L EA ++I SM +E +  +W A LGA
Sbjct: 380 EGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGA 439

Query: 475 CRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNP 520
           CR H +V   E+    LLE++ QN               R +DVAK+R LM +R +K  P
Sbjct: 440 CRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTP 499

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G + I+V+   H+F  GD +HP+ KEIY MLK +  KL++ GY P+++ VL D+DEE K 
Sbjct: 500 GWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKI 559

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
                HSEKLAIAFG I T     IR+IKNLR
Sbjct: 560 GILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 46/416 (11%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           + T+   T L  H + EE S  +       +  I  ++N +  T    ++Q HA     G
Sbjct: 33  IETQFRQTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLT---QVRQVHAQASVHG 89

Query: 61  HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
             ++  V+  L+  +  S +   + A  +F+ +   +   W+ ++    +  +       
Sbjct: 90  MLENIVVANKLI--YFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGT 147

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           + E++   ++P+ +T P V +AC   +  + G  +H  V K GL  D  V ++ + MY  
Sbjct: 148 FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 207

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---------- 230
              +  AR + D   + D++ W  +I GY +CG    +  LF+  +++            
Sbjct: 208 CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 267

Query: 231 -------GSYN----------------------AMISGFARFGRFEEARKLFNEMNDKDE 261
                  G+ +                      AMI  +A+ G  E AR++F+ M +K+ 
Sbjct: 268 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 327

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           I+WSA+I  Y   G  ++AL++F  M    + P K  L+ +L AC+  G +++G+     
Sbjct: 328 ISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSS 387

Query: 322 VKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMH 375
           +  + S+  D    T +VD+  + GRLD A K+ + M + K+   W A +G    H
Sbjct: 388 MWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 43/373 (11%)

Query: 44   TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            T+   ++Q H      G  Q+  V+  LV  +  S +   + A  +F+ +   +   W+ 
Sbjct: 749  TNLTQVRQVHXQASVHGMLQNLIVANKLVXFY--SYYRALDDAYGLFDGMCVRDSVSWSV 806

Query: 104  VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
            ++    +  +       + E++   ++P+ +T P V +AC   +  + G  +H  V K G
Sbjct: 807  MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 866

Query: 164  LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
            L  D  V ++ + MY     +  AR + D   + D++ W  +I GY +CG+   +  LF 
Sbjct: 867  LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFD 926

Query: 224  STKD--------------------------KNTGSY-------------NAMISGFARFG 244
              ++                          +    Y              AMI   A+ G
Sbjct: 927  KMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCG 986

Query: 245  RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
              E AR++F+ M +K+ I+WSA+I  Y   G  ++AL++F  M R  I P K  L  +L 
Sbjct: 987  CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 1046

Query: 305  ACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEV 362
            AC+  G +++G+     +  + S+  D    T +VD+  + GRLD A K+   M   K+ 
Sbjct: 1047 ACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDE 1106

Query: 363  FTWNAMIGGLAMH 375
              W A +G    H
Sbjct: 1107 GLWGAFLGACRTH 1119



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 96/204 (47%), Gaps = 8/204 (3%)

Query: 62   FQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120
            FQ   + GT ++  HA  +    E A ++F+ + + NV  W++++ A   H +  + + L
Sbjct: 968  FQLDVILGTAMIDMHA--KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 1025

Query: 121  YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYA 179
            +  M+     PNK T  ++  ACS     +EG++  + + ++  +  DV   +  + +  
Sbjct: 1026 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLG 1085

Query: 180  CFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDI---EGAKELFKSTKDKNTGSYNA 235
              G +++A +++   + + D   W A +       D+   E A       + +N G Y  
Sbjct: 1086 RAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYIL 1145

Query: 236  MISGFARFGRFEEARKLFNEMNDK 259
            + + +A  GR+E+  K+ + M+ +
Sbjct: 1146 LSNIYANAGRWEDVAKIRDLMSQR 1169



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           E A ++F+ + + NV  W++++ A   H +  + + L+  M+     P+K T  ++  AC
Sbjct: 313 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYAC 372

Query: 144 SITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVIC 201
           S     +EG++  + + ++  +  DV   +  + +    G +++A +++   + + D   
Sbjct: 373 SHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL 432

Query: 202 WNALIDGYLKCGDI---EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           W A +       D+   E A       + +N G Y  + + +A  GR+E+  K+ + M+ 
Sbjct: 433 WGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQ 492

Query: 259 K 259
           +
Sbjct: 493 R 493


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/437 (44%), Positives = 281/437 (64%), Gaps = 16/437 (3%)

Query: 234 NAMISGFARFGR--FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           N +I  ++ FG     +AR +F+ M+    +TWSA+I GY + G   +A+ +F EMQ   
Sbjct: 171 NTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASG 230

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++P +  +  VLAA A LGAL+   W+   V+R  I     L  AL+D  AKCG +D A 
Sbjct: 231 VRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAV 290

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VF+ M+ + V +W ++I  LAM GR  +A+ +F  M+   +RPD + F  VL+AC+HAG
Sbjct: 291 AVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAG 350

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           M+D G      M+  YGIDP++EHYGC+VD+ GRAG +  A E I +MPM+PN  +W  L
Sbjct: 351 MVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTL 410

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           + ACR HG +E GE + + LL   P +              +R  + +++R+ M +RGIK
Sbjct: 411 VAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIK 470

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PG S+++++G +HEF  GD SHPQ KEIY+M++++  +LK  G+   +S+VL D+DEE
Sbjct: 471 KVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEE 530

Query: 578 EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
           +KE A ++HSEKLAIAF  + T PG  +RV+KNLRVC DCH+A K IS V+ R+IIVRDR
Sbjct: 531 DKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDR 590

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+H F+NG CSCNDFW
Sbjct: 591 SRFHRFKNGSCSCNDFW 607



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 169/381 (44%), Gaps = 56/381 (14%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV----FVWNSVLR 106
           Q+ A +LKSG   +  V   L +  A+S  +   L   +  ++ +P+V    F+ N+++R
Sbjct: 45  QSLAFLLKSGLHANPLV---LTRLFASSAAAAPALLEPLVAALLRPSVPIDAFLVNTLIR 101

Query: 107 ACLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA-DKEGVQVHAHVVKN 162
           A      P    R  + +  M+     PNKFT+P + KAC+        G+Q HA  +K 
Sbjct: 102 AHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKF 161

Query: 163 GLCGDVHVKSSGIQMYACFG--CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           G   D +V ++ I MY+CFG   +  AR + D   KS V+ W+A+I GY++ G    A  
Sbjct: 162 GFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVG 221

Query: 221 LFKSTK---------------------------------------DKNTGSYNAMISGFA 241
           LF+  +                                        K+    NA+I   A
Sbjct: 222 LFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALA 281

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G  + A  +F  M ++  ++W+++ID    +G  KEA+ VF  M+   ++P   V   
Sbjct: 282 KCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIG 341

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKM 359
           VL AC+  G +D+G    D +K     +D  +     +VDM+ + G ++ A +    M M
Sbjct: 342 VLTACSHAGMVDEGYGYFDSMKME-YGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPM 400

Query: 360 K-EVFTWNAMIGGLAMHGRAD 379
           K     W  ++     HGR +
Sbjct: 401 KPNPIIWRTLVAACRAHGRLE 421



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 16/276 (5%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL--ALKVFNSVHKPNVFVWNSVLRAC 108
           QAHA  LK G   D YVS TL+  H  S F    L  A  VF+ + K +V  W++++   
Sbjct: 153 QAHAAALKFGFATDQYVSNTLI--HMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGY 210

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +        + L+ EM     +P++ T   V  A +   A +    V   V + G+   V
Sbjct: 211 VRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSV 270

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            + ++ I   A  G V+ A  +     +  V+ W ++ID     G  + A  +F++ K  
Sbjct: 271 TLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTA 330

Query: 229 NTGS----YNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIIDGYTKDGYYKE 279
                   +  +++  +  G  +E    F+ M      D     +  ++D + + G  + 
Sbjct: 331 GVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVER 390

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           A+E  + M    +KP   +   ++AAC + G L+ G
Sbjct: 391 AMEFIHTM---PMKPNPIIWRTLVAACRAHGRLELG 423


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 343/659 (52%), Gaps = 59/659 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + HA ILKS    D YV+  LV  H   RF     A ++F+ + + +   WNS++    +
Sbjct: 133 EIHAAILKSNQVLDVYVANALVAMHV--RFGKMSYAARIFDELDEKDNITWNSMIAGFTQ 190

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      +  +  +   + KP++ +  ++  A         G ++HA+ +KN L  ++ +
Sbjct: 191 NGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRI 250

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY--------------------- 209
            ++ I MY+   CV  A  + D     D+I W  +I  Y                     
Sbjct: 251 GNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGM 310

Query: 210 ----------------LKCGDIEGAKELFKSTKDKNTGSY---NAMISGFARFGRFEEAR 250
                           L+C  +  AKE+   T  +        N +I  +A  G    A 
Sbjct: 311 DVDTMMIGSTLLACSGLRC--LSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYAT 368

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F  +  KD ++W+++I  Y  +G   EAL VF  M+   ++P    L  +L+A ASL 
Sbjct: 369 RMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLS 428

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL++G  IH  + R    ++     +LVDMYA CG L+ A+KVF   + K +  W  MI 
Sbjct: 429 ALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMIN 488

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
              MHGR   A+ELF  M+ +K+ PD ITF  +L AC+H+G+I+ G + L  M+  Y ++
Sbjct: 489 AYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLE 548

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P  EHY C+VDLLGRA +L EA   + SM +EP A VW A LGACR H   + GE   + 
Sbjct: 549 PWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQK 608

Query: 491 LLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           LL+++P +               R  DV ++R  MK  G+K NPG S I+V   +H F  
Sbjct: 609 LLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLV 668

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            D SHP+  +IY  L +I EKL+ E GY P +  VL ++ +EEK      HSE+LAIA+G
Sbjct: 669 RDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYG 728

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            ++T  G  IR+ KNLRVC DCH+  KL+SK F+R++IVRD  R+HHF +G CSC DFW
Sbjct: 729 LMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 192/409 (46%), Gaps = 55/409 (13%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + FT+P V KAC + E    G ++H  ++K G    V V +S + MYA    +  AR++ 
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 192 DD-GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS------------------ 232
           D    ++DV+ WN++I  Y   G    A  LF+  +    G+                  
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 233 ---------------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                 NA+++   RFG+   A ++F+E+++KD ITW+++I G+
Sbjct: 129 KLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGF 188

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           T++G Y EAL+ F  +Q   +KP +  L  +LAA   LG L  G  IH +  +N +  + 
Sbjct: 189 TQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNL 248

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +G  L+DMY+KC  +  A  VF+ M  K++ +W  +I   A +    +A++L  K+Q +
Sbjct: 249 RIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTK 308

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID-----PEVEHYGCIVDLLGRA 446
            M  D +     L AC+       GL+ L++ ++++G        ++     I+D+    
Sbjct: 309 GMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADC 361

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           G +  A  +  S+  + +   W +++ +C  H  +   E LG   L  E
Sbjct: 362 GNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLA-NEALGVFYLMKE 407



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 242/529 (45%), Gaps = 81/529 (15%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN-VFVWNSVLRACL 109
           + H +I+K G+    +V+ +LV  +A  + ++   A K+F+ +++ N V  WNS++ A  
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYA--KCNDILGARKLFDRMNERNDVVSWNSIISAYS 88

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            + +    + L+ EM       N +T     +AC  +   K G+++HA ++K+    DV+
Sbjct: 89  LNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVY 148

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ + M+  FG ++ A +I D+  + D I WN++I G+ + G    A + F   +D N
Sbjct: 149 VANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDAN 208

Query: 230 TG----SYNAMISGFARFGRFEEARKL--------------------------------- 252
                 S  ++++   R G     +++                                 
Sbjct: 209 LKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 253 --FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
             F++M +KD I+W+ +I  Y ++  + EAL++  ++Q   +     ++   L AC+ L 
Sbjct: 269 LVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLR 328

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            L     +H +  +  +  D ++   ++D+YA CG ++ A ++FE +K K+V +W +MI 
Sbjct: 329 CLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMIS 387

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA------LTYMQ 424
               +G A++A+ +F+ M+   + PD IT   +LSA A    +++G +         +M 
Sbjct: 388 CYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFML 447

Query: 425 QMYGIDPEVEHYGC------------------------IVDLLGRAGYLAEAEEVISSM- 459
           +   ++  V+ Y C                        +++  G  G    A E+ S M 
Sbjct: 448 EGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIME 507

Query: 460 --PMEPNAAVWEALLGACRKHGEVEFGERLGKIL-----LEMEPQNRRC 501
              + P+   + ALL AC   G +  G+RL + +     LE  P++  C
Sbjct: 508 DQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYAC 556



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 136/332 (40%), Gaps = 38/332 (11%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
            H K+ H   LK G   D  +   ++  +A+    N   A ++F S+   +V  W S++ 
Sbjct: 331 SHAKEVHGYTLKRG-LSDLMMQNMIIDVYADC--GNINYATRMFESIKCKDVVSWTSMIS 387

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             + +      + ++  M     +P+  T  ++  A +   A  +G ++H  + + G   
Sbjct: 388 CYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFML 447

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           +    +S + MYAC G +  A ++        ++ W  +I+ Y   G  + A ELF   +
Sbjct: 448 EGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIME 507

Query: 227 DK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYY 277
           D+    +  ++ A++   +  G   E ++L   M  K ++      ++ ++D   +  + 
Sbjct: 508 DQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHL 567

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--- 334
           +EA      MQ   I+P   V    L AC           IH + K   I    +L    
Sbjct: 568 EEAYHFVKSMQ---IEPTAEVWCAFLGACR----------IHSNKKLGEIAAQKLLDLDP 614

Query: 335 ------TALVDMYAKCGRLDMAWKVFEDMKMK 360
                   + +++A  GR    WK  E+++M+
Sbjct: 615 DSPGSYVLISNVFAASGR----WKDVEEVRMR 642


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 326/623 (52%), Gaps = 54/623 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+S+   +V  WN+++  C  +      + L  +M      PN  T   V      
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +A   G  +H + V+      V V +  + MYA   C+  AR+I D     + + W+A+
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNT----------------------------------G 231
           I GY+    ++ A ELF     K+                                   G
Sbjct: 283 IGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342

Query: 232 SY------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           S       N ++S +A+ G  ++A + F+EMN KD +++SAI+ G  ++G    AL +F 
Sbjct: 343 SVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFR 402

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            MQ   I P    +  VL AC+ L AL  G   H ++       D ++  AL+DMY+KCG
Sbjct: 403 MMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCG 462

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           ++  A +VF  M   ++ +WNAMI G  +HG   +A+ LF  +    ++PD ITF C+LS
Sbjct: 463 KISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLS 522

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           +C+H+G++  G      M + + I P +EH  C+VD+LGRAG + EA   I +MP EP+ 
Sbjct: 523 SCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDV 582

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
            +W ALL ACR H  +E GE + K +  + P++               R DD A +R   
Sbjct: 583 RIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQ 642

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K+ G+K  PG S I++NG++H F  GD SH Q+ +I   L++++ ++K  GY    S V 
Sbjct: 643 KDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVF 702

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++EEEKE    YHSEKLAIAFG +N   G  I V KNLRVC DCH+A K ++ + KR+
Sbjct: 703 QDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKRE 762

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I VRD  R+HHF+NG C+C DFW
Sbjct: 763 ITVRDANRFHHFKNGTCNCGDFW 785



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 229/471 (48%), Gaps = 46/471 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H   LK+    D  V   L + + +   +   LA ++F+ +  P+V +WN ++RA  
Sbjct: 28  KKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEIPNPSVILWNQIIRA-Y 84

Query: 110 EHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             N P+   I LY  M+ +  +PNK+TYP V KACS   A ++GV++H+H    GL  DV
Sbjct: 85  AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ +  YA  G + +A+++    S  DV+ WNA+I G    G  + A +L    +++
Sbjct: 145 FVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEE 204

Query: 229 NTGSYNAMISG---------------------------------------FARFGRFEEA 249
                ++ I G                                       +A+      A
Sbjct: 205 GICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYA 264

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACAS 308
           RK+F+ M  ++E++WSA+I GY      KEALE+F++M  +D + P    L  VL ACA 
Sbjct: 265 RKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAK 324

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L  L +G  +H ++ +    +D +LG  L+ MYAKCG +D A + F++M  K+  +++A+
Sbjct: 325 LTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAI 384

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G   +G A  A+ +F  MQ   + PD  T   VL AC+H   +  G  +  Y+  + G
Sbjct: 385 VSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL-IVRG 443

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              +      ++D+  + G ++ A EV + M    +   W A++     HG
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHG 493



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 176/388 (45%), Gaps = 44/388 (11%)

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           K  Y  + +AC  +++  E  ++H H +KN    D  V     ++Y     V  AR++ D
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKST------KDKNTGSY------------- 233
           +     VI WN +I  Y   G  +GA +L+ S        +K T  +             
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 234 --------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                                A++  +A+ G   EA++LF+ M+ +D + W+A+I G + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G   +A+++  +MQ + I P    +  VL       AL  G  +H +  R S     V+
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-QREK 392
           GT L+DMYAKC  L  A K+F+ M ++   +W+AMIGG        +A+ELF +M  ++ 
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDA 307

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           M P  +T   VL ACA    + RG +   Y+ ++ G   ++     ++ +  + G + +A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL-GSVLDILLGNTLLSMYAKCGVIDDA 366

Query: 453 EEVISSMPMEPNAAV-WEALLGACRKHG 479
                   M P  +V + A++  C ++G
Sbjct: 367 IRFFDE--MNPKDSVSFSAIVSGCVQNG 392



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           +   K+T + ++   + +   +    +   AR+LF+E+ +   I W+ II  Y  +G + 
Sbjct: 32  QHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFD 91

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+++++ M    ++P K+    VL AC+ L A++ G+ IH H K   +  D  + TALV
Sbjct: 92  GAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALV 151

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D YAKCG L  A ++F  M  ++V  WNAMI G +++G  DDA++L  +MQ E + P+  
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS 211

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL     A  +  G +AL         D  V     ++D+  +   L  A ++   
Sbjct: 212 TIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDV 270

Query: 459 MPMEPNAAVWEALLGA-----CRKHGEVEFGERLGKILLEMEPQN-----RRC---DDVA 505
           M +  N   W A++G      C K     F + + K  ++  P       R C    D++
Sbjct: 271 MGVR-NEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 506 KMRKL 510
           + RKL
Sbjct: 330 RGRKL 334



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 102/231 (44%), Gaps = 24/231 (10%)

Query: 33  TILDILNTKCH-TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T+L +L    H  + QH   +H  ++  G   D  +   L+  +  S+      A +VFN
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMY--SKCGKISFAREVFN 472

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + ++  WN+++     H      + L+ +++ +  KP+  T+  +  +CS       
Sbjct: 473 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS-----HS 527

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACF---------GCVNKARQILDDGS-KSDVIC 201
           G+ +   +  + +  D  +     +M  C          G +++A   + +   + DV  
Sbjct: 528 GLVMEGRLWFDAMSRDFSIVP---RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 202 WNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEA 249
           W+AL+       +IE  +E+ K   S   ++TG++  + + ++  GR+++A
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDA 635


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 280/449 (62%), Gaps = 15/449 (3%)

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           LFK   D +    N +I  +   G  + A K+F EM ++D ++WS++I  + K+G+  EA
Sbjct: 110 LFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEA 169

Query: 281 LEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           L +F  MQ    +KP + ++  V++A + LG L+ G WI   + RN +     LGTALVD
Sbjct: 170 LALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVD 229

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           M+++CG ++ + +VF++M  + V TW A+I GLA+HGR+ +A+ +F++M+    +PD +T
Sbjct: 230 MFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVT 289

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL AC+H G++  G      ++  YG++P  EHYGC+VDLLGRAG L EA + +  M
Sbjct: 290 FTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGM 349

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P+ PN+ +W  LLGAC  H  +E  E++ + + E++  +               R  + A
Sbjct: 350 PIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKA 409

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
            +R  M+E+ I   PG S+I+VN +IHEF  GD +HPQ + I   L  +I+ LK+ GY+P
Sbjct: 410 GVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTP 469

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           + S VLFDI+EEEKE+   YHSEKLA+AF  +      TIRV+KNLR+C DCH   K  S
Sbjct: 470 DISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYAS 529

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            VF+R+II+RDR R+HHF  G CSC D+W
Sbjct: 530 DVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 174/372 (46%), Gaps = 48/372 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
            H+ + HA +LK+GH         L+   A S  ++   A  +F+ +  P+ F +N+++R
Sbjct: 2   NHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIR 61

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + +     +SL+S+M      P+ FT+P V KAC+  +    G+ +H+ + K G   
Sbjct: 62  AHADSSPS-FSLSLFSKMAMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDS 117

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV+V++  I  Y C G ++ A ++ ++  + D++ W+++I  + K G    A  LF+  +
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177

Query: 227 -----------------------DKNTGSY-----------------NAMISGFARFGRF 246
                                  D   G +                  A++  F+R G  
Sbjct: 178 LVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCI 237

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EE+ ++F+EM +++ +TW+A+I+G    G   EAL +F EM+    +P     + VL AC
Sbjct: 238 EESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVAC 297

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           +  G + +G  + + + RN   ++ +      +VD+  + G L+ A K  + M ++    
Sbjct: 298 SHGGLVSEGWHVFESI-RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSI 356

Query: 364 TWNAMIGGLAMH 375
            W  ++G    H
Sbjct: 357 IWRTLLGACVNH 368



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F+ +   D   ++ II  +  D     +L +F++M    + P  F    VL ACA 
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAHA-DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACAR 99

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L     G+ +H  + +     D  +   L+  Y  CG LD A KVFE+M  +++ +W++M
Sbjct: 100 L---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSM 156

Query: 369 IGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           I   A +G   +A+ LF +MQ    ++PD +    V+SA +  G ++ G     ++ +  
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISR-N 215

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G++  V     +VD+  R G + E+  V   M  E N   W AL+     HG
Sbjct: 216 GLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHG 266



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 138/314 (43%), Gaps = 46/314 (14%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+++ K G   D YV   L+  +    F +F  ALKVF  + + ++  W+S++    ++ 
Sbjct: 107 HSLLFKLGFDSDVYVQNGLIHFYGCCGFLDF--ALKVFEEMPERDLVSWSSMIACFAKNG 164

Query: 113 EPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
             +  ++L+  M  V + KP++    +V  A SI    + G  +   + +NGL   V + 
Sbjct: 165 FGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLG 224

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           ++ + M++  GC+ ++ ++ D+  + +V+ W ALI+                        
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMGERNVLTWTALIN------------------------ 260

Query: 232 SYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                  G A  GR  EA ++F EM +     D +T++ ++   +  G   E   VF  +
Sbjct: 261 -------GLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 288 QRD-KIKPRKFVLSCVLAACASLGALDQGIWIHD--HVKRNSICVDAVLGTALVDMYAKC 344
           + +  ++P      C++      G L++     D   ++ NSI    +LG  +   Y   
Sbjct: 314 RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY--- 370

Query: 345 GRLDMAWKVFEDMK 358
             +++A KV E + 
Sbjct: 371 --IELAEKVKEKIN 382



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 7/188 (3%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR    E +++VF+ + + NV  W +++     H      + ++ EM     +P+  T+ 
Sbjct: 232 SRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFT 291

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG--IQMYACFGCVNKARQILDDGS 195
            V  ACS      EG  V   + +N    +   +  G  + +    G +N+A + +D   
Sbjct: 292 GVLVACSHGGLVSEGWHVFESI-RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMP 350

Query: 196 -KSDVICWNALIDGYLKCGDIEGA---KELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
            + + I W  L+   +    IE A   KE        + G Y  + + +   GR+ E   
Sbjct: 351 IRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAG 410

Query: 252 LFNEMNDK 259
           + N M +K
Sbjct: 411 VRNSMREK 418


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/655 (33%), Positives = 345/655 (52%), Gaps = 55/655 (8%)

Query: 53   HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
            HA   K GH ++ +V   L+   A S       A +VF+ +   +   W +++    E++
Sbjct: 554  HACACKLGHDRNAFVGSALID--AYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEND 611

Query: 113  EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
             P   + ++S+M    SK N F   +V +A     +   G  +HA  VK     + HV  
Sbjct: 612  CPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG 671

Query: 173  SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDK 228
            + + MYA  G +  AR   +  +  DVI W+ +I  Y +C   E A ELF    +S+   
Sbjct: 672  ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSP 731

Query: 229  NTGSY-----------------------------------NAMISGFARFGRFEEARKLF 253
            N  S                                    NA+I  +A+    E + ++F
Sbjct: 732  NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIF 791

Query: 254  NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            + + D +E++W+ II GY+K G+ + AL VF EM+   +   +   S VL ACAS  +++
Sbjct: 792  SSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASIN 851

Query: 314  QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
                +H  +++++   D ++  +L+D YAKCG +  A ++FE +K  ++ +WNA+I G A
Sbjct: 852  HVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYA 911

Query: 374  MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            +HG+A  A ELF  M +  ++ + ITF  +LS C   G++ +GL     M+  +GI+P +
Sbjct: 912  VHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSM 971

Query: 434  EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            EHY CIV LLGRAG L +A   I  +P  P+A VW ALL +C  H  VE G    + +LE
Sbjct: 972  EHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLE 1031

Query: 494  MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
            +EPQ+                 D VA  RK M+  G++  PG S +++ G +H F  G  
Sbjct: 1032 IEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSE 1091

Query: 540  SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
             HP ++ I  ML+ +  K   EGY P++ +VL D++EE+K      HSE+LA+A+G + T
Sbjct: 1092 DHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMT 1151

Query: 600  DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             PG  IR++KNLR C DCH+  K+ISK+ K++IIVRD  R+HHF  G CSC D+W
Sbjct: 1152 PPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 210/480 (43%), Gaps = 47/480 (9%)

Query: 50  KQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           +  H  +++SG     D + +  L+  +  ++   F  A +VF+ + + N+  + ++++ 
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMY--TKVGPFGSAHRVFDGLPERNMVSFVTLVQG 505

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                E     +L+  +     + N+F   TV K     +       VHA   K G   +
Sbjct: 506 HALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRN 565

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
             V S+ I  Y+  G V+ AR++ D     D + W A++  Y +    E   ++F     
Sbjct: 566 AFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV 625

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K+  D     Y A++  +A+ G  E+
Sbjct: 626 AVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIED 685

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR  F  + + D I WS +I  Y +    ++A E+F  M R  + P +F LS VL ACA+
Sbjct: 686 ARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACAN 745

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +  LD G  IH+H  +     +  +G AL+D+YAKC  ++ + ++F  ++     +WN +
Sbjct: 746 MPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTI 805

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ-MY 427
           I G +  G  + A+ +F +M+   +   ++T++ VL ACA    I+   Q    +++  +
Sbjct: 806 IVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTF 865

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
             D  V +   ++D   + G + +A E+  ++  E +   W A++     HG+    + L
Sbjct: 866 NSDTIVSN--SLIDSYAKCGCIRDAREIFETL-KECDLVSWNAIISGYAVHGQAAMAQEL 922



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 174/448 (38%), Gaps = 108/448 (24%)

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
           + SL     GVDS    + Y  + + C      + G  VH HVV++G          G+ 
Sbjct: 416 LTSLAFPWPGVDS----YAYARLLQGCVARGDARGGRAVHGHVVRSG----------GL- 460

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAM 236
                             ++ D+ C N L++ Y K G    A  +F    ++N  S+  +
Sbjct: 461 ------------------ARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTL 502

Query: 237 ISGFARFGRFEEARKLFNEM---------------------------------------N 257
           + G A  G FEEA  LF  +                                       +
Sbjct: 503 VQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGH 562

Query: 258 DKDEITWSAIIDGYTKDGYYKEA-------------------------------LEVFNE 286
           D++    SA+ID Y+  G   +A                               L++F++
Sbjct: 563 DRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSK 622

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+    K   F L+ VL A   L ++  G  IH    +     +  +  AL+DMYAKCG 
Sbjct: 623 MRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGN 682

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           ++ A   FE +   +V  W+ MI   A   + + A ELF +M R  + P+  + + VL A
Sbjct: 683 IEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQA 742

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           CA+  ++D G Q   +  ++ G + E+     ++DL  +   +  + E+ SS+  + N  
Sbjct: 743 CANMPLLDLGKQIHNHAIKI-GHESELFVGNALIDLYAKCSDMESSLEIFSSL-RDVNEV 800

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEM 494
            W  ++    K G   FGE    +  EM
Sbjct: 801 SWNTIIVGYSKSG---FGEAALSVFREM 825



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 33/317 (10%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            KQ H   +K GH  + +V   L+  +A  + S+ E +L++F+S+   N   WN+++    
Sbjct: 753  KQIHNHAIKIGHESELFVGNALIDLYA--KCSDMESSLEIFSSLRDVNEVSWNTIIVGYS 810

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +       +S++ EM        + TY +V +AC+ T +     QVH  + K+    D  
Sbjct: 811  KSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTI 870

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
            V +S I  YA  GC+  AR+I +   + D++ WNA+I GY   G    A+ELF    K++
Sbjct: 871  VSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNS 930

Query: 226  KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
               N  ++ A++S     G   +   LF+ M     I      ++ I+    + G   +A
Sbjct: 931  IKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDA 990

Query: 281  LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------ 334
            L    ++      P   V   +L++C           +H +V+      + VL       
Sbjct: 991  LNFIGDIPS---APSAMVWRALLSSCI----------VHKNVELGRFSAEKVLEIEPQDE 1037

Query: 335  ---TALVDMYAKCGRLD 348
                 L +MY+  G LD
Sbjct: 1038 TTYVLLSNMYSAAGSLD 1054


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 344/623 (55%), Gaps = 56/623 (8%)

Query: 50  KQAHAVILKSG-HFQDHYVSGTL---VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           ++ +A I  SG    D  VS  +   +KC+A       ++A ++F+     N+ + N++ 
Sbjct: 256 EKVYAFIRNSGIEVNDLMVSALVDMYMKCNA------IDVAKRLFDEYGASNLDLCNAMA 309

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              +        + +++ M+    +P++ +  +   +CS       G   H +V++NG  
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF- 368

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                           D IC NALID Y+KC   + A  +F   
Sbjct: 369 -----------------------------ESWDNIC-NALIDMYMKCHRQDTAFRIFDRM 398

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            +K   ++N++++G+   G  + A + F  M +K+ ++W+ II G  +   ++EA+EVF 
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458

Query: 286 EMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            MQ ++ +      +  + +AC  LGALD   WI+ ++++N I +D  LGT LVDM+++C
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRC 518

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G  + A  +F  +  ++V  W A IG +AM G A+ AIELF  M  + ++PD + F   L
Sbjct: 519 GDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGAL 578

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+H G++ +G +    M +++G+ PE  HYGC+VDLLGRAG L EA ++I  MPMEPN
Sbjct: 579 TACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPN 638

Query: 465 AAVWEALLGACRKHGEVEFG------------ERLGKILL--EMEPQNRRCDDVAKMRKL 510
             +W +LL ACR  G VE              ER G  +L   +     R +D+AK+R  
Sbjct: 639 DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLS 698

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           MKE+G++  PG+S I + G  HEF +GD SHP++  I  ML ++ ++    G+ P+ S V
Sbjct: 699 MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNV 758

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D+DE+EK      HSEKLA+A+G I+++ G TIR++KNLRVC DCHS  K  SKV+ R
Sbjct: 759 LMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNR 818

Query: 631 DIIVRDRVRYHHFRNGKCSCNDF 653
           +II+RD  R+H+ R GKCSC DF
Sbjct: 819 EIILRDNNRFHYIRQGKCSCGDF 841



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 223/534 (41%), Gaps = 90/534 (16%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG 60
           M    TTT  P  L   + +    P+S  + KTI              LK  H  + K G
Sbjct: 13  MVLATTTTTKPSLLNQSKCTKAT-PSSLKNCKTI------------DELKMFHRSLTKQG 59

Query: 61  HFQDHYVSGTLV--KCHANSRFSNFELALKVF-NSVHKPNVFVWNSVLRACLEHNEPWRV 117
              D      LV   C   +R S    A +VF NS      F++NS++R           
Sbjct: 60  LDNDVSTITKLVARSCELGTRES-LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEA 118

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           I L+  M+     P+K+T+P    AC+ + A   G+Q+H  +VK G   D+ V++S +  
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHF 178

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--------------- 222
           YA  G ++ AR++ D+ S+ +V+ W ++I GY +    + A +LF               
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVT 238

Query: 223 --------KSTKDKNTGS-----------------YNAMISGFARFGRFEEARKLFNEMN 257
                      +D  TG                   +A++  + +    + A++LF+E  
Sbjct: 239 MVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYG 298

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
             +    +A+   Y + G  +EAL VFN M    ++P +  +   +++C+ L  +  G  
Sbjct: 299 ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKS 358

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKC-------------------------------GR 346
            H +V RN       +  AL+DMY KC                               G 
Sbjct: 359 CHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGE 418

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLS 405
           +D AW+ FE M  K + +WN +I GL      ++AIE+F  MQ +E +  D +T   + S
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           AC H G +D       Y+++  GI  +V     +VD+  R G    A  + +S+
Sbjct: 479 ACGHLGALDLAKWIYYYIEK-NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 319/574 (55%), Gaps = 50/574 (8%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC T + H+K+ HA I+K     D YV+  L+   A S      LA+ VFN +  PNV +
Sbjct: 32  KC-TDFNHIKEVHAQIIKRNLHNDLYVAPKLIS--AFSLCHQMNLAVNVFNQIQDPNVHL 88

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           +N+++RA +++++  +  + + +M       + FTYP + KAC+          +H HV 
Sbjct: 89  YNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVE 148

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVN---------------------------------KA 187
           K G  GD+ V +S I  Y+  G +                                  +A
Sbjct: 149 KYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRA 208

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE 247
           R++ D+ ++ D + WN ++DGY+K G++  A  LF+   ++N  S++ M+SG+ + G  E
Sbjct: 209 RKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDME 268

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR LF++M  K+ +TW+ II G+ + G  KEA  ++N+M+   +KP    L  +LAACA
Sbjct: 269 MARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACA 328

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
             G L  G  +H  +K+  I     +  ALVDMYAKCGR+D A  +F +M M+++ +WN 
Sbjct: 329 ESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNC 388

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           M+ GLAMHG  + AI+LF KMQ+E  +PD++T   +L AC HAG +D+GL     M++ +
Sbjct: 389 MLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDH 448

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P +EHYGC++DLLGR G L EA  ++ SMPMEPN  +W  LLGACR H  V   E++
Sbjct: 449 GIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKV 508

Query: 488 GKILLEME---PQNRRC-----------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L+ +E   P N              + VA MR  MK  G++   G+S I+++  +HE
Sbjct: 509 LDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHE 568

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           F   D SHP+  +IY +L K+ + LK   Y+P +
Sbjct: 569 FTVFDKSHPETDKIYQILVKLGQDLKQVAYAPEA 602


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 322/618 (52%), Gaps = 77/618 (12%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH-----------NEPWRVISLYSEMVG 126
           +R+   + A  +F+ +H+PNV  WN+++   +++             P+R    ++ M+ 
Sbjct: 332 ARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIA 391

Query: 127 VDSKPNKFTYPTV--------------------FKACSITEADKEGVQVHAHVVKNGLCG 166
             ++  +     V                    F ACS  EA + G QVH+  VK G   
Sbjct: 392 GYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAG--- 448

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
                      Y C                      NALI  Y K   I   +++F    
Sbjct: 449 ------CQFNSYVC----------------------NALITLYGKYRSIGSVRQIFDRMT 480

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
            K+T SYN+ +S   +   F+EAR +FN M   D ++W+ II    +     EA+E+F  
Sbjct: 481 VKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRS 540

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M  ++  P   +L+ +L    +LGA   G  IH    +  +    V+  ALV MY KC  
Sbjct: 541 MLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS 600

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
            D + KVF+ M+ +++FTWN +I G A HG   +AI ++  M    + P+ +TF  +L A
Sbjct: 601 AD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHA 659

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H+G++D G Q    M   YG+ P +EHY C+VDLLGRAG +  AE  I  MP+EP++ 
Sbjct: 660 CSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSV 719

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512
           +W ALLGAC+ H  VE G R  + L  +EP N                 D+VAK+RKLMK
Sbjct: 720 IWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMK 779

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           ERG+  +PG S + +   +H F TGD  H Q++ IY  L ++   LK  GY P++  VL 
Sbjct: 780 ERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLH 839

Query: 573 DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDI 632
           DIDEE+KE++  YHSEKLA+A+G + T  G  I+++KNLR+C DCH+  K +S V KR+I
Sbjct: 840 DIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREI 899

Query: 633 IVRDRVRYHHFRNGKCSC 650
            VRD  R+HHFRNG CSC
Sbjct: 900 DVRDGNRFHHFRNGSCSC 917



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 15/320 (4%)

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           G++   +  +  YA  G V  AR++ D     + + WNA++  Y++ GDI  A++LF + 
Sbjct: 93  GNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAM 152

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
             ++  S+N M++G+      EEAR LF  M +++ ++W+ +I GY     +  A ++F 
Sbjct: 153 PSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFR 212

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK-C 344
            M  + + P +  L  VL+A   LG       IH  V +     D V+GTA+++ Y K  
Sbjct: 213 TMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDV 272

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR--PDRITFAC 402
             LD A K FE M  +  +TW+ +I  L+  GR DDA  ++   QR+ ++  P R +   
Sbjct: 273 NMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY---QRDPLKSVPSRTS--- 326

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +L+  A  G ID    A     Q++  +P V  +  ++    +   + EAE++ + MP  
Sbjct: 327 MLTGLARYGRID---DAKILFDQIH--EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR 381

Query: 463 PNAAVWEALLGACRKHGEVE 482
            N   W  ++    ++G  E
Sbjct: 382 -NTISWAGMIAGYARNGRSE 400



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 130/251 (51%), Gaps = 8/251 (3%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
            +++ G  + G I+ AK LF    + N  S+NAMI+G+ +    +EA  LFN M  ++ I
Sbjct: 325 TSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTI 384

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           +W+ +I GY ++G  ++AL     + R  + P    L+    AC+++ AL+ G  +H   
Sbjct: 385 SWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLA 444

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            +     ++ +  AL+ +Y K   +    ++F+ M +K+  ++N+ +  L  +   D+A 
Sbjct: 445 VKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEAR 504

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
           ++F  M      PD +++  ++SACA A   D+G +A+   + M   + E+ +   +  L
Sbjct: 505 DVFNNMP----SPDVVSWTTIISACAQA---DQGNEAVEIFRSMLH-ERELPNPPILTIL 556

Query: 443 LGRAGYLAEAE 453
           LG +G L   +
Sbjct: 557 LGLSGNLGAPQ 567



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 141/309 (45%), Gaps = 20/309 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H++ +K+G   + YV   L+  +   ++ +     ++F+ +   +   +NS + A +
Sbjct: 438 KQVHSLAVKAGCQFNSYVCNALITLYG--KYRSIGSVRQIFDRMTVKDTVSYNSFMSALV 495

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++N       +++ M      P+  ++ T+  AC+  +   E V++   ++      +  
Sbjct: 496 QNNLFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPP 551

Query: 170 VKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           + +  + +    G     +QI    +  G  S ++  NAL+  Y KC   +  K +F S 
Sbjct: 552 ILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSM 610

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEAL 281
           ++++  ++N +I+G+A+ G   EA +++  M       +E+T+  ++   +  G   E  
Sbjct: 611 EERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGH 670

Query: 282 EVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGI--WIHDH-VKRNSICVDAVLGTAL 337
           + F  M  D  + P     +C++      G + QG   +I+D  ++ +S+   A+LG   
Sbjct: 671 QFFKSMSSDYGLTPLLEHYACMVDLLGRAGDV-QGAEHFIYDMPIEPDSVIWSALLGACK 729

Query: 338 VDMYAKCGR 346
           +    + GR
Sbjct: 730 IHKNVEIGR 738



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 26/260 (10%)

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           +   T + +A I    R GR  EAR++F+ M  +D I W+++I  Y  +G       + +
Sbjct: 29  RSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLAD 88

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKC 344
            +    ++    +LS      A  G +     + D +  RN++  +     A+V  Y + 
Sbjct: 89  AISGGNLRTGTILLS----GYARAGRVRDARRVFDGMGVRNTVAWN-----AMVTCYVQN 139

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR--ITFAC 402
           G + +A K+F+ M  ++V +WN M+ G       ++A  LF +M      P+R  +++  
Sbjct: 140 GDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERM------PERNGVSWTV 193

Query: 403 VLSACAHAGMIDRGLQALTYMQQMY--GIDPEVEHYGCIVDL---LGRAGYLAEAEEVIS 457
           ++S      +I++  +A    + M   G+ PE  +   ++     LG+ G L     ++ 
Sbjct: 194 MISGYV---LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVH 250

Query: 458 SMPMEPNAAVWEALLGACRK 477
               E +  V  A+L    K
Sbjct: 251 KTGFERDVVVGTAILNGYTK 270



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 10/216 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H + +K G      V+  LV  +     ++   +LKVF+S+ + ++F WN+++    
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD---SLKVFDSMEERDIFTWNTIITGYA 626

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDV 168
           +H      I +Y  MV     PN+ T+  +  ACS +    EG Q    +  + GL   +
Sbjct: 627 QHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLL 686

Query: 169 HVKSSGIQMYACFGCVNKARQ-ILDDGSKSDVICWNALIDGYLKCGDIE----GAKELFK 223
              +  + +    G V  A   I D   + D + W+AL+       ++E     A++LF 
Sbjct: 687 EHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLF- 745

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           S +  N G+Y  + + ++  G ++E  K+   M ++
Sbjct: 746 SIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKER 781


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 326/577 (56%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y T   AC+ ++  ++  +VHAH+  +   GD  + +S I +Y   G V +AR++
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 191 LDDGSKSDVICWNALIDGYLK-------CGDIEGA-KELFK------STKDKNTGSY--- 233
            D+  + D++ W +LI GY +        G + G  K  FK      ++  K  G++   
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 234 ----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                 +A++  +AR G  + A  +F++++ K+ ++W+A+I G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            + G  + AL  F EM R+  +   F  S V ++ A LGAL+QG W+H H+ ++   + A
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
             G  L+DMYAK G +  A KVF+ +  K++ TWN M+   A +G   +A+  F +M++ 
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
            +  +++TF C+L+AC+H G++  G +    M++ Y ++PE++H+  +V LLGRAG L  
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNF 407

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------ 499
           A   I  MP+EP AAVW ALL ACR H   + G+     + E++P +             
Sbjct: 408 ALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467

Query: 500 --RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             + D  A++R++MK  G+K  P  S +++   +H F   D +HP+ +EIY M  +I +K
Sbjct: 468 TGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKK 527

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           ++ EGY P+   VL  +D++E+E   +YHSEKLA+AF  I    GATIR++KN+R+C DC
Sbjct: 528 IRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDC 587

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           HSA K ISKVF R+I+VRD  R+HHF NG CSC D+W
Sbjct: 588 HSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 181/426 (42%), Gaps = 59/426 (13%)

Query: 10  LPHHLKPEEISATNIPTSEFSQKTILDILN---------------TKCHTS--WQHLKQA 52
           L  H +P   +A N   +  +    LD+L+               T C  S   +  ++ 
Sbjct: 14  LYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKV 73

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA +  S    D ++  +L+  H   +  +   A KVF+ + + ++  W S++    +++
Sbjct: 74  HAHLASSRFAGDAFLDNSLI--HLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQND 131

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   I L   M+    KPN FT+ ++ KA         G Q+HA  VK     DV+V S
Sbjct: 132 MPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGS 191

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDK 228
           + + MYA  G ++ A  + D     + + WNALI G+ + GD E A     E+ ++  + 
Sbjct: 192 ALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEA 251

Query: 229 NTGSYNAMISGFARFGRFEE-----------------------------------ARKLF 253
              +Y+++ S  AR G  E+                                   ARK+F
Sbjct: 252 THFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVF 311

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + ++DKD +TW+ ++  + + G  KEA+  F EM++  I   +    C+L AC+  G + 
Sbjct: 312 DRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVK 371

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGL 372
           +G    + +K   +  +      +V +  + G L+ A      M ++     W A++   
Sbjct: 372 EGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAAC 431

Query: 373 AMHGRA 378
            MH  A
Sbjct: 432 RMHKNA 437



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 6/194 (3%)

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
           ++ P   V    + ACA    L+    +H H+  +    DA L  +L+ +Y KCG +  A
Sbjct: 46  ELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEA 105

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC-AH 409
            KVF++M+ K++ +W ++I G A +   ++AI L   M + + +P+  TFA +L A  AH
Sbjct: 106 RKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAH 165

Query: 410 A-GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           A   I R + AL      +    +V     ++D+  R G +  A  V   +  + N   W
Sbjct: 166 ADSGIGRQIHALAVKCDWH---EDVYVGSALLDMYARCGMMDMATAVFDKLDSK-NGVSW 221

Query: 469 EALLGACRKHGEVE 482
            AL+    + G+ E
Sbjct: 222 NALISGFARKGDGE 235


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 320/587 (54%), Gaps = 55/587 (9%)

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
           EMV +  +     Y  +  AC    A +EG +VHAH++K       ++++  +  Y    
Sbjct: 41  EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 100

Query: 183 CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDKNTGSY----- 233
           C+  AR++LD+  + +V+ W A+I  Y + G    A     E+ +S    N  ++     
Sbjct: 101 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLT 160

Query: 234 ------------------------------NAMISGFARFGRFEEARKLFNEMNDKDEIT 263
                                         ++++  +A+ G+ EEAR++F  + ++D ++
Sbjct: 161 SCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVS 220

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
            +AII GY + G  +EALE+F  +Q + ++P     + +L A + L  LD G   H HV 
Sbjct: 221 CTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVL 280

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           R  +   AVL  +L+DMY+KCG L  A ++F++M  +   +WNAM+ G + HG   + +E
Sbjct: 281 RRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 340

Query: 384 LFFKMQREK-MRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVD 441
           LF  M+ EK ++PD +T   VLS C+H  M D GL     M    YGI P+ EHYGCIVD
Sbjct: 341 LFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVD 400

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-- 499
           +LGRAG + EA E I  MP +P A V  +LLGACR H  V+ GE +G  L+E+EP+N   
Sbjct: 401 MLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGN 460

Query: 500 ------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                       R +DV  +R +M ++ +   PG S I     +H F   D +HP+ +E+
Sbjct: 461 YVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 520

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
              +K+I  K+K  GY P+ S VL+D+DEE+KE     HSEKLA+ FG I T  G  IRV
Sbjct: 521 LAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRV 580

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLR+C DCH+  K+ SKVF+R++ +RD+ R+H    G CSC D+W
Sbjct: 581 FKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 173/373 (46%), Gaps = 45/373 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA ++K+ +    Y+   L+  +   +    E A KV + + + NV  W +++    
Sbjct: 71  QRVHAHMIKTRYLPATYLRTRLLIFYG--KCDCLEDARKVLDEMPEKNVVSWTAMISRYS 128

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       +S+++EM+  D KPN+FT+ TV  +C        G Q+H  +VK      + 
Sbjct: 129 QTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIF 188

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V SS + MYA  G + +AR+I +   + DV+   A+I GY + G  E A E+F+  + + 
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG 248

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                   N++I  +++ G    A+
Sbjct: 249 MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQ 308

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
           +LF+ M ++  I+W+A++ GY+K G  +E LE+F  M+ +K +KP    L  VL+ C+  
Sbjct: 309 RLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHG 368

Query: 310 GALDQGIWIHDHV--KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF-TWN 366
              D G+ I+D +      I  D      +VDM  + GR+D A++  + M  K       
Sbjct: 369 KMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLG 428

Query: 367 AMIGGLAMHGRAD 379
           +++G   +H   D
Sbjct: 429 SLLGACRVHLSVD 441



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 16/280 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H +I+K  +    +V  +L+  +A +     E A ++F  + + +V    +++    
Sbjct: 172 KQIHGLIVKWNYDSHIFVGSSLLDMYAKA--GQIEEAREIFECLPERDVVSCTAIIAGYA 229

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + ++  +     +PN  TY ++  A S       G Q H HV++  L     
Sbjct: 230 QLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAV 289

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           +++S I MY+  G ++ A+++ D+  +   I WNA++ GY K G      ELF+  +D+ 
Sbjct: 290 LQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK 349

Query: 229 ----NTGSYNAMISGFARFGRFEEARKLFNEMN------DKDEITWSAIIDGYTKDGYYK 278
               +  +  A++SG +     +    +++ M         D   +  I+D   + G   
Sbjct: 350 RVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRID 409

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           EA E    M     KP   VL  +L AC    ++D G ++
Sbjct: 410 EAFEFIKRMPS---KPTAGVLGSLLGACRVHLSVDIGEYV 446


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/650 (33%), Positives = 346/650 (53%), Gaps = 70/650 (10%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALK 88
           S + IL  L + C+T+ +  KQ H  +  +G H    +    L+ C  +        +L+
Sbjct: 7   SCEEILLSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLR 66

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITE 147
           +F+    P+ F++N+++R+    + P   +  + +++   +  P+ F++    K  +   
Sbjct: 67  LFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDG 126

Query: 148 ADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
             K +G+Q+H+H  ++G    + V ++ I MYA                           
Sbjct: 127 CSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYA--------------------------- 159

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFG-------RFEEARKLFNEMNDK 259
               +CG  E A+++F      N  ++NA+++   R G        F     +F EM  +
Sbjct: 160 ----ECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMR 215

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D+ +WS +I G+ K G + +A   F E+ RD+ +P +  L+ VL+ACA  GA + G  +H
Sbjct: 216 DDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILH 275

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
             +++        +  AL+D Y+KCG +DMA  VF                 LAMHGRAD
Sbjct: 276 GFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFNI--------------SLAMHGRAD 321

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +AI +F +M+   +RPD +TF  +L AC+H+G++++G    + M+  YGI+P +EHYGC+
Sbjct: 322 EAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCM 381

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           VDL GRA  L +A E I  MP+ PN  +W  LLGAC  HG +E  E +   L EM+P N 
Sbjct: 382 VDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNS 441

Query: 500 --------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         +  DVA +R+ M E+ +K  PG SMI+++ V + F  G+  +   K
Sbjct: 442 GDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTK 501

Query: 546 EIYLMLKKIIEKLK-MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           E +  L++I+ +L+  EGY+P    VL D++EEEKE +   HSEKLA AFG      G  
Sbjct: 502 EAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRI 561

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R++KNLRVC DCH+  KLISKV++ +IIVRDR R+H F+ G CSC D+W
Sbjct: 562 LRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/446 (43%), Positives = 284/446 (63%), Gaps = 19/446 (4%)

Query: 227 DKNTGSYNAMISGFARFGRFE--EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
           D  TG  N +I  +A+ G  +   ARKLF +M D+D ++W+ +I  Y ++G   EAL ++
Sbjct: 224 DGQTGVANTIIDAYAKGGGHDLGAARKLF-DMMDRDVVSWNTMIALYAQNGLSTEALGLY 282

Query: 285 NEMQ--RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           ++M      ++     LS VL ACA  GA+  G  IH+ V R  +  +  +GT++VDMY+
Sbjct: 283 SKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYS 342

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG+++MAWK F+ +K K + +W+AMI G  MHG   +A+ +F  M++  ++P+ ITF  
Sbjct: 343 KCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFIT 402

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL+AC+HAG++  G      M+  +GI+P VEHYGC+VDLLGRAG L EA  +I  M ++
Sbjct: 403 VLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVK 462

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           P+AA+W ALL ACR +  VE  +   + L E++  N                  +V +MR
Sbjct: 463 PDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMR 522

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
            L+K RGI+  PG S +++ G  H F  GD SHPQ KEIY  L+K++E++   GY PN+ 
Sbjct: 523 VLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTG 582

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            VL D+D EE+E+  + HSEKLA+AF  +N+  G+ I VIKNLRVC DCH+A K+I+K+ 
Sbjct: 583 SVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLT 642

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+II+RD  R+HHF++G CSC D+W
Sbjct: 643 GREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 163/368 (44%), Gaps = 51/368 (13%)

Query: 50  KQAHAVILKSGHF-QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H + L+SG F  D Y +  L+  + +  F   + A + F+ +  PN  +  ++   C
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMYHHC-FRPLD-ARRAFDEIPTPNPVIVTAMASGC 165

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ--VHAHVVKNGLCG 166
           + +N  +  +S++  MV   S         +    +       G+   +HA V K GL G
Sbjct: 166 MRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDG 225

Query: 167 DVHVKSSGIQMYACFGC--VNKARQILDDGSKSDVICWNALIDGY--------------- 209
              V ++ I  YA  G   +  AR++ D   + DV+ WN +I  Y               
Sbjct: 226 QTGVANTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQNGLSTEALGLYSK 284

Query: 210 -------------------LKC---GDIEGAK----ELFKSTKDKNTGSYNAMISGFARF 243
                              L C   G I+  K    ++ +   + N     +++  +++ 
Sbjct: 285 MLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKC 344

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+ E A K F ++  K+ ++WSA+I GY   GY +EAL VF +M++  +KP       VL
Sbjct: 345 GKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVL 404

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMK-E 361
           AAC+  G L +G + ++ +K        V     +VD+  + G LD A+ + ++MK+K +
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 464

Query: 362 VFTWNAMI 369
              W A++
Sbjct: 465 AALWGALL 472



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 146/327 (44%), Gaps = 38/327 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA++ K G      V+ T++  +A     +   A K+F+ + + +V  WN+++    ++ 
Sbjct: 215 HALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQNG 273

Query: 113 EPWRVISLYSEM--VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                + LYS+M  VG D + N  T   V  AC+   A + G ++H  VV+ GL  +V+V
Sbjct: 274 LSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYV 333

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTK 226
            +S + MY+  G V  A +        +++ W+A+I GY   G  + A  +F    KS  
Sbjct: 334 GTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGL 393

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEAL 281
             N  ++  +++  +  G   E R  +N M  +  I      +  ++D   + G   EA 
Sbjct: 394 KPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAY 453

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------- 334
            +  EM   K+KP   +   +L+AC           I+ +V+   IC + +         
Sbjct: 454 GLIKEM---KVKPDAALWGALLSACR----------IYKNVELAKICAERLFELDATNSG 500

Query: 335 --TALVDMYAKCGRLDMAWKVFEDMKM 359
               L ++YA+ G     WK  E M++
Sbjct: 501 YYVLLSNIYAEAG----MWKEVERMRV 523


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/432 (41%), Positives = 271/432 (62%), Gaps = 11/432 (2%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I    R   +  A+ +FN+M  +D +TW+ +I GY +   ++EAL +F  M +  ++
Sbjct: 80  NLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVE 139

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P K+  + V+  CA LGAL    W+H+ +    I ++ +L +AL+DMY+KCG++  A ++
Sbjct: 140 PDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEI 199

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ ++   V  WNAMI GLA+HG A DAI++F KM+ E + PD ITF  +L+AC+H G++
Sbjct: 200 FDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLV 259

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
             G +    M+  Y + P +EHYG +VDLLGRAG L EA  +I SMPMEP+  +W ALLG
Sbjct: 260 KEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLG 319

Query: 474 ACRKHGEVEFGE---------RLGKILL--EMEPQNRRCDDVAKMRKLMKERGIKTNPGS 522
           ACR + + E GE         R G  +L   +    +R D    + ++MK++G+    G 
Sbjct: 320 ACRTYKKPELGEAAMANISRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGK 379

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S  +  G +H F+ GD SHP+ + IY ML+ +I++ K+ GY P +  V  D+ EEEKE  
Sbjct: 380 SCFEWAGFLHPFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGN 439

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
             +HSEKLA+A+G + T  GA +R+ KNLR+C DCHS  K++S++  R IIVRDR+R+H 
Sbjct: 440 LYHHSEKLALAYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHR 499

Query: 643 FRNGKCSCNDFW 654
           F NG CSC D+W
Sbjct: 500 FENGLCSCGDYW 511



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 146/337 (43%), Gaps = 29/337 (8%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  N+ +A  VFN +   +V  WN+++   +        + L+  M   + +P+K+T+ +
Sbjct: 88  RTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFAS 147

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V   C+   A K    VH  +++  +  +  + S+ I MY+  G +  A++I D   +++
Sbjct: 148 VINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNN 207

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
           V  WNA+I G    G    A ++F   + +N      ++  +++  +  G  +E RK F+
Sbjct: 208 VCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFD 267

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  +      + A++D   + G  +EA  +   M    ++P   +   +L AC + 
Sbjct: 268 LMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSM---PMEPDVVIWRALLGACRTY 324

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV------- 362
              + G     ++ R     D VL   L ++Y    R D A  V+E MK K V       
Sbjct: 325 KKPELGEAAMANISRLR-SGDYVL---LSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKS 380

Query: 363 -FTWNAMIGGLAMHGRADDAIELFFKM-----QREKM 393
            F W   +       R+    E  +KM     QR K+
Sbjct: 381 CFEWAGFLHPFKAGDRSHPETEAIYKMLEGLIQRTKL 417



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 13/181 (7%)

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
           +D V    ++D   +     +A  VF  M+ ++V TWN MIGG     R ++A+ LF  M
Sbjct: 74  IDLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFM 133

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE----HYGCIVDLLG 444
            +  + PD+ TFA V++ CA  G     L+   ++ ++  I+  +E        ++D+  
Sbjct: 134 NKSNVEPDKYTFASVINGCAKLG----ALKHAQWVHELL-IEKRIELNFILSSALIDMYS 188

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           + G +  A+E+   +    N  +W A++     HG         K+  +ME +N   D +
Sbjct: 189 KCGKIQTAKEIFDGVQ-RNNVCIWNAMISGLAVHG---LALDAIKVFTKMEVENVLPDAI 244

Query: 505 A 505
            
Sbjct: 245 T 245



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/216 (18%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +H +  H ++++     +  +S  L+  +  S+    + A ++F+ V + NV +WN+++ 
Sbjct: 159 KHAQWVHELLIEKRIELNFILSSALIDMY--SKCGKIQTAKEIFDGVQRNNVCIWNAMIS 216

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
               H      I ++++M   +  P+  T+  +  ACS     KEG + +  ++++    
Sbjct: 217 GLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRK-YFDLMRSRYSV 275

Query: 167 DVHVKSSG--IQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKELFK 223
             H++  G  + +    G + +A  ++     + DV+ W AL+         E  +    
Sbjct: 276 QPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMA 335

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           +     +G Y  + + +    R++ A+ ++  M  K
Sbjct: 336 NISRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKK 371


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/651 (34%), Positives = 339/651 (52%), Gaps = 85/651 (13%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P    + + IL +L   C  S + L + HA IL +G+  +  +S  L+   A S   +  
Sbjct: 17  PLMMANARAILSLLQ-GC-NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLA 74

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV--ISLYSEMVGVD-SKPNKFTYPTVFK 141
            A  VF+ +H P    WNS++R   +   P ++  I  Y+ M+    ++P+ +T+  + K
Sbjct: 75  YAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLK 134

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC   EA +E           G C +VH    G               I+  G   DV+ 
Sbjct: 135 ACE--EAKEE-----------GKCREVH----GF--------------IIRFGYDQDVVL 163

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
              LI  Y                               A  G  E A K+F EM  +D 
Sbjct: 164 CTNLIRSY-------------------------------AGNGLIETAHKVFEEMPARDL 192

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           ++W+++I  Y + G ++EAL+++++M+   +    F L  +L++CA +GAL  G+ +H  
Sbjct: 193 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 252

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
                +  +  +G AL+DMYAKCG L  A  +F  M  ++VFTWN+MI G  +HGR D+A
Sbjct: 253 AGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 312

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           I  F  M    +RP+ ITF  +L  C+H G++  G+Q    M   + + P ++HYGC+VD
Sbjct: 313 ITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVD 372

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE-------RLGK----- 489
           L GRAG L EA EVI S P + +  +W  LLG+C+ H  VE GE       +LG      
Sbjct: 373 LFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGD 432

Query: 490 --ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
             +L  +  + +    VA+MRKL++ RGIKT PG S I+V   +H F   D SHP  +EI
Sbjct: 433 CVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREI 492

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK----ETAPKYHSEKLAIAFGFINTDPGA 603
           Y  L+++I +  + GY+   S ++   +   +    ET+  YHSEKLAIA+G   T  G 
Sbjct: 493 YRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGT 552

Query: 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++ ++KNLRVC DCH+ TK +S  F R+IIVRDRVR+HHF+ G CSC +FW
Sbjct: 553 SLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/545 (36%), Positives = 312/545 (57%), Gaps = 42/545 (7%)

Query: 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           YS  +G+ S   K     + +AC  +   +   Q HA ++K G      + +S +  YA 
Sbjct: 10  YSPFLGILSDHQKLN--CILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAH 67

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
             C++ A Q+LD+     +  W     G+                   +  + N +I+  
Sbjct: 68  CDCLDLAHQLLDE-----MPYW-----GF-------------------DLITANLIIASL 98

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + G F+ A+++F +M  +D +TW+++I G  ++  ++EAL  F EM    ++P  F  +
Sbjct: 99  MKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFA 158

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            V+  CA LG+      +H  +    I ++ +L +AL+D+Y+KCGR++ A KVF  ++  
Sbjct: 159 SVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHD 218

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +V  WN+MI GLA+HG A DAI +F +M+ E + PD ITF  +L+AC+H G++++G +  
Sbjct: 219 DVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYF 278

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             M++ Y I P++EHYG +VDLLGRAG + EA  +I +MPMEP+  +W ALL ACR    
Sbjct: 279 DLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKN 338

Query: 481 VEFGE-RLGKI----------LLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E GE  + KI          L  M     + D   ++R++MK  G++ N G S +++ G
Sbjct: 339 PELGEVAIAKISHLNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGG 398

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
           VIH+F+ GD SHP+   IY +L+ +I + K+EG+ P +  VL D+ +EE+E     HSEK
Sbjct: 399 VIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEK 458

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LA+A+  + T PG  IRV KNLR C DCH   K++S++  R IIVRDR+R+H F  G CS
Sbjct: 459 LALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCS 518

Query: 650 CNDFW 654
           C D+W
Sbjct: 519 CRDYW 523



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 132/290 (45%), Gaps = 18/290 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +   F+ A +VF  + + +V  WNS++  C+ +      +  + EM+  + +P+ FT+ +
Sbjct: 100 KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFAS 159

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V   C+   +      VH  +++  +  +  + S+ I +Y+  G +N A+++ +     D
Sbjct: 160 VINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDD 219

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
           V  WN++I+G    G    A  +F   + ++      ++  +++  +  G  E+ R+ F+
Sbjct: 220 VSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFD 279

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M     I      + A++D   + G  +EA  +   M    ++P   +   +L+AC + 
Sbjct: 280 LMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAM---PMEPDIVIWRALLSACRNF 336

Query: 310 GALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
              + G + I      NS   D +L   L +MY    + D A +V E MK
Sbjct: 337 KNPELGEVAIAKISHLNS--GDYIL---LSNMYCSLEKWDSAERVREMMK 381



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  H +  H ++++     +  +S  L+  +  S+      A KVFNS+   +V VWNS+
Sbjct: 169 SSHHAELVHGLMIEKKIQLNFILSSALIDLY--SKCGRINTAKKVFNSIQHDDVSVWNSM 226

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +     H      I ++S+M      P+  T+  +  ACS     ++G + +  +++   
Sbjct: 227 INGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQG-RRYFDLMRRHY 285

Query: 165 CGDVHVKSSG--IQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKEL 221
                ++  G  + +    G V +A  ++     + D++ W AL+       + E  +  
Sbjct: 286 SIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVA 345

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                  N+G Y  + + +    +++ A ++  EM  +D +
Sbjct: 346 IAKISHLNSGDYILLSNMYCSLEKWDSAERV-REMMKRDGV 385


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/485 (39%), Positives = 291/485 (60%), Gaps = 15/485 (3%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
           V+ AR++ +   +   + W +++ GY   G IE A+E F+    K   + NAMI      
Sbjct: 219 VDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEV 278

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR++F++M D+D  TW  +I  Y + G+  EALE+F +MQR  ++P    L  +L
Sbjct: 279 GEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISIL 338

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + CA+L +L  G  +H H+ R     D  + + L+ MY KCG L  A  VF+    K++ 
Sbjct: 339 SVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDII 398

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN++I G A HG  ++A+++F +M      P+++T   +L+AC++ G ++ GL+    M
Sbjct: 399 MWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESM 458

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +  + + P VEHY C VD+LGRAG + +A E+I+SM ++P+A VW ALLGAC+ H  ++ 
Sbjct: 459 ESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDL 518

Query: 484 GERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E   K L E+EP+N               +  DVA+MRK M+ + +   PG S I+V  
Sbjct: 519 AEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGK 578

Query: 530 VIHEF-RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
            +H F R G  +HP+   I +ML+K    L+  GYSP+ S VL D+DEEEK  +   HSE
Sbjct: 579 KVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSE 638

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LA+A+G +    G  IRV+KNLRVC DCH+A KLISKV +R+II+RD  R+HHF NG+C
Sbjct: 639 RLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGEC 698

Query: 649 SCNDF 653
           SC D+
Sbjct: 699 SCRDY 703



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 155/323 (47%), Gaps = 28/323 (8%)

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           +S +  Y   G   +ARQ+ D+  + +++ WN L+ GY+K   IE A+ +F+   ++N  
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S+ AM+ G+ + G   EA  LF  M +++E++W+ +  G    G   +A ++++ M    
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMM---- 167

Query: 292 IKPRKFVLSC--VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             P K V++   ++      G +D+   I D ++  ++    +  T ++  Y +  R+D+
Sbjct: 168 --PGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDV 221

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC--VLSAC 407
           A K+FE M  K   +W +M+ G  + GR +DA E F  M      P +   AC  ++ A 
Sbjct: 222 ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM------PMKPVIACNAMIVAL 275

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPN 464
              G I +  +    M+     D +   +  ++    R G+  EA E+ + M    + P+
Sbjct: 276 GEVGEIVKARRVFDQME-----DRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPS 330

Query: 465 AAVWEALLGACRKHGEVEFGERL 487
                ++L  C     +++G ++
Sbjct: 331 FPSLISILSVCATLASLQYGRQV 353



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
            G +N+AR+  D      +  WN+++ GY   G    A+++F    ++N  S+N ++SG+
Sbjct: 30  IGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGY 89

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVL 299
            +    EEAR +F  M +++ ++W+A++ GY ++G   EA  +F  M +R+++       
Sbjct: 90  IKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVS-----W 144

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           + +       G +D    ++D +       D V  T ++    + GR+D A ++F++M+ 
Sbjct: 145 TVMFGGLIDGGRIDDARKLYDMMPGK----DVVASTNMIGGLCREGRVDEAREIFDEMRE 200

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           + V TW  MI G   + R D A +LF  M  +      +++  +L     +G I+   + 
Sbjct: 201 RNVITWTTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEF 256

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M     + P +     IV  LG  G + +A  V   M    NA  W  ++ A  + G
Sbjct: 257 FEVMP----MKPVIACNAMIVA-LGEVGEIVKARRVFDQMEDRDNAT-WRGMIKAYERKG 310



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 34/285 (11%)

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           + G I  A++ F S + K  GS+N+++SG+   G   EAR++F+EM +++ ++W+ ++ G
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSG 88

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV------KR 324
           Y K+   +EA  VF      +I P + V+S         G + +G+ +   +      +R
Sbjct: 89  YIKNRMIEEARNVF------EIMPERNVVSW---TAMVKGYVQEGMVVEAELLFWRMPER 139

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N +    + G  L+D     GR+D A K+++ M  K+V     MIGGL   GR D+A E+
Sbjct: 140 NEVSWTVMFG-GLID----GGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREI 194

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M RE+   + IT+  +++       +D         ++++ + PE         LLG
Sbjct: 195 FDEM-RER---NVITWTTMITGYGQNKRVD-------VARKLFEVMPEKTEVSWTSMLLG 243

Query: 445 R--AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
              +G + +AEE    MPM+P  A   A++ A  + GE+    R+
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIAC-NAMIVALGEVGEIVKARRV 287



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 19/298 (6%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAV---ILKSGHFQDHYVSGTLVKCHAN----SRFSNFE 84
           + + +++  K   SW  +   + +   I  +  F +      ++ C+A            
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIV 282

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A +VF+ +   +   W  +++A          + L+++M     +P+  +  ++   C+
Sbjct: 283 KARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              + + G QVHAH+V+    GDV+V S  + MY   G + KA+ + D     D+I WN+
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNS 402

Query: 205 LIDGYLKCGDIEGAKELFK----STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I GY   G  E A ++F     S    N  +  A+++  +  G+ EE  ++F  M  K 
Sbjct: 403 IISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKF 462

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            +T     +S  +D   + G   +A+E+ N M    IKP   V   +L AC +   LD
Sbjct: 463 CVTPTVEHYSCTVDMLGRAGKVDKAMELINSMT---IKPDATVWGALLGACKTHSRLD 517


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 324/574 (56%), Gaps = 55/574 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y T+   C    A +EG +VH H++K      V++++  I +Y    C+  AR++ D+  
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISG------------ 239
           + +V+ W A+I  Y + G    A  LF    +S  + N  ++  +++             
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 240 -----------------------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                                  +A+ GR  +A  +F+ + ++D +  +AII GY + G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL++F ++Q + +       + VL A + L AL+ G  +H HV R+      VL  +
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRP 395
           L+DMY+KCG +  A ++F+ M  +   +WNAM+ G + HG A + +ELF  M+ E K++P
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 392

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D IT+  VLS C+H  + D GL+    M     GI+P++ HYGC+VDLLGRAG + EA +
Sbjct: 393 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 452

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
            I  MP  P AA+W +LLG+CR H +VE G  +G+ LLE+EP+N               +
Sbjct: 453 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 512

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +D+  +R LM+E+ +   PG S ++++ ++H F   D +HP+ +E+   +K++  K K 
Sbjct: 513 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKE 572

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           +GY P+ S VL+D+DEE+KE     HSEKLA+AFG I T  G TIRVIKNLR+C DCHS 
Sbjct: 573 DGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSF 632

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K +S+++ R +I+RD+ R+H+   G CSC D+W
Sbjct: 633 AKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 169/363 (46%), Gaps = 45/363 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+ + + NV  W +++ A  +    +  ++L+ EM+  D++PN FT+ T+  +C  
Sbjct: 144 AREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 203

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           +   + G Q+H+  +K      + V SS + MYA  G +  A  +     + DV+   A+
Sbjct: 204 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 263

Query: 206 IDGYLKCGDIEGAKELFKSTK----DKNTGSY---------------------------- 233
           I GY + G  E A +LF+  +    + N+ +Y                            
Sbjct: 264 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 323

Query: 234 -------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  N++I  +++ G    AR++F+ M ++  I+W+A++ GY+K G  +E LE+F  
Sbjct: 324 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 383

Query: 287 M-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAK 343
           M + +K+KP       VL+ C+     D G+ I  ++      ++  +G    +VD+  +
Sbjct: 384 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 443

Query: 344 CGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
            GR++ A+   + M  +     W +++G   +H  +D  I +    +  ++ P+      
Sbjct: 444 AGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH--SDVEIGIIVGQKLLELEPENAGNYV 501

Query: 403 VLS 405
           +LS
Sbjct: 502 ILS 504



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            +  H KQ H+ +L+SG +    +  +L+  +  S+  N   A ++F+S+ +     WN+
Sbjct: 306 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMY--SKCGNVCYARRIFDSMPERTCISWNA 363

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVV-- 160
           +L    +H     V+ L+  M   +  KP+  TY  V   CS  + +  G+++  ++V  
Sbjct: 364 MLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNG 423

Query: 161 KNGLCGDVHVKSSGIQMYAC----FGCVNKARQILDDGSKSDVI----CWNALIDGY--- 209
           K+G+  D       I  Y C     G   +  +  D   K   +     W +L+      
Sbjct: 424 KDGIEPD-------IGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 476

Query: 210 --LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
             ++ G I G K L    + +N G+Y  + + +A  G++E+ R + + M +K
Sbjct: 477 SDVEIGIIVGQKLL--ELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 526


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 279/449 (62%), Gaps = 15/449 (3%)

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           LFK   D +    N +I  +   G  + A K F EM ++D ++WS++I  + K+G+  EA
Sbjct: 110 LFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEA 169

Query: 281 LEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           L +F  MQ    +KP + ++  V++A + LG L+ G WI   + RN +     LGTALVD
Sbjct: 170 LALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVD 229

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           M+++CG ++ + +VF++M  + V TW A+I GLA+HGR+ +A+ +F++M+    +PD +T
Sbjct: 230 MFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVT 289

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VL AC+H G++  G      ++  YG++P  EHYGC+VDLLGRAG L EA + +  M
Sbjct: 290 FTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGM 349

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P+ PN+ +W  LLGAC  H  +E  E++ + + E++  +               R  + A
Sbjct: 350 PIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKA 409

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
            +R  M+E+ I   PG S+I+VN +IHEF  GD +HPQ + I   L  +I+ LK+ GY+P
Sbjct: 410 GVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTP 469

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
           + S VLFDI+EEEKE+   YHSEKLA+AF  +      TIRV+KNLR+C DCH   K  S
Sbjct: 470 DISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYAS 529

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            VF+R+II+RDR R+HHF  G CSC D+W
Sbjct: 530 DVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 173/372 (46%), Gaps = 48/372 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
            H+ + HA +LK+GH         L+   A S  ++   A  +F+ +  P+ F +N+++R
Sbjct: 2   NHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIR 61

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + +     +SL+S+M      P+ FT+P V KAC+  +    G+ +H+ + K G   
Sbjct: 62  AHADSSPS-FSLSLFSKMTMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDS 117

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV+V++  I  Y C G ++ A +  ++  + D++ W+++I  + K G    A  LF+  +
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177

Query: 227 -----------------------DKNTGSY-----------------NAMISGFARFGRF 246
                                  D   G +                  A++  F+R G  
Sbjct: 178 LVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCI 237

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EE+ ++F+EM +++ +TW+A+I+G    G   EAL +F EM+    +P     + VL AC
Sbjct: 238 EESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVAC 297

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVF 363
           +  G + +G  + + + RN   ++ +      +VD+  + G L+ A K  + M ++    
Sbjct: 298 SHGGLVSEGWHVFESI-RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSI 356

Query: 364 TWNAMIGGLAMH 375
            W  ++G    H
Sbjct: 357 IWRTLLGACVNH 368



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F+ +   D   ++ II  +  D     +L +F++M    + P  F    VL ACA 
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAHA-DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACAR 99

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L     G+ +H  + +     D  +   L+  Y  CG LD A K FE+M  +++ +W++M
Sbjct: 100 L---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSM 156

Query: 369 IGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           I   A +G   +A+ LF +MQ    ++PD +    V+SA +  G ++ G     ++ +  
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISR-N 215

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G++  V     +VD+  R G + E+  V   M  E N   W AL+     HG
Sbjct: 216 GLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTALINGLAVHG 266



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 137/314 (43%), Gaps = 46/314 (14%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+++ K G   D YV   L+  +    F +F  ALK F  + + ++  W+S++    ++ 
Sbjct: 107 HSLLFKLGFDSDVYVQNGLIHFYGCCGFLDF--ALKAFEEMPERDLVSWSSMIACFAKNG 164

Query: 113 EPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
             +  ++L+  M  V + KP++    +V  A SI    + G  +   + +NGL   V + 
Sbjct: 165 FGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLG 224

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           ++ + M++  GC+ ++ ++ D+  + +V+ W ALI+                        
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMGERNVLTWTALIN------------------------ 260

Query: 232 SYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                  G A  GR  EA ++F EM +     D +T++ ++   +  G   E   VF  +
Sbjct: 261 -------GLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESI 313

Query: 288 QRD-KIKPRKFVLSCVLAACASLGALDQGIWIHD--HVKRNSICVDAVLGTALVDMYAKC 344
           + +  ++P      C++      G L++     D   ++ NSI    +LG  +   Y   
Sbjct: 314 RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNY--- 370

Query: 345 GRLDMAWKVFEDMK 358
             +++A KV E + 
Sbjct: 371 --IELAEKVKEKIN 382



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 7/188 (3%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           SR    E +++VF+ + + NV  W +++     H      + ++ EM     +P+  T+ 
Sbjct: 232 SRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFT 291

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG--IQMYACFGCVNKARQILDDGS 195
            V  ACS      EG  V   + +N    +   +  G  + +    G +N+A + +D   
Sbjct: 292 GVLVACSHGGLVSEGWHVFESI-RNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMP 350

Query: 196 -KSDVICWNALIDGYLKCGDIEGA---KELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
            + + I W  L+   +    IE A   KE        + G Y  + + +   GR+ E   
Sbjct: 351 IRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAG 410

Query: 252 LFNEMNDK 259
           + N M +K
Sbjct: 411 VRNSMREK 418


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/644 (34%), Positives = 337/644 (52%), Gaps = 85/644 (13%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           + IL +L   C  S + L + HA IL +G+  +  +S  L+   A S   +   A  VF+
Sbjct: 6   RAILSLLQ-GC-NSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFH 63

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRV--ISLYSEMVGVD-SKPNKFTYPTVFKACSITEA 148
            +H P    WNS++R   +   P ++  I  Y+ M+    ++P+ +T+  + KAC   EA
Sbjct: 64  RIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACE--EA 121

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
            +E           G C +VH    G               I+  G   DV+    LI  
Sbjct: 122 KEE-----------GKCREVH----GF--------------IIRFGYDQDVVLCTNLIRS 152

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
           Y                               A  G  E A K+F EM  +D ++W+++I
Sbjct: 153 Y-------------------------------AGNGLIETAHKVFEEMPARDLVSWNSMI 181

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             Y + G ++EAL+++++M+   +    F L  +L++CA +GAL  G+ +H       + 
Sbjct: 182 SCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLV 241

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            +  +G AL+DMYAKCG L  A  +F  M  ++VFTWN+MI G  +HGR D+AI  F  M
Sbjct: 242 ENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSM 301

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
               +RP+ ITF  +L  C+H G++  G+Q    M   + + P ++HYGC+VDL GRAG 
Sbjct: 302 LMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGK 361

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE-------RLGK-------ILLEM 494
           L EA EVI S P + +  +W  LLG+C+ H  VE GE       +LG        +L  +
Sbjct: 362 LKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGI 421

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
             + +    VA+MRKL++ RGIKT PG S I+V   +H F   D SHP  +EIY  L+++
Sbjct: 422 YAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEV 481

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEK----ETAPKYHSEKLAIAFGFINTDPGATIRVIKN 610
           I +  + GY+   S ++   +   +    ET+  YHSEKLAIA+G   T  G ++ ++KN
Sbjct: 482 IHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKN 541

Query: 611 LRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           LRVC DCH+ TK +S  F R+IIVRDRVR+HHF+ G CSC +FW
Sbjct: 542 LRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/664 (31%), Positives = 356/664 (53%), Gaps = 56/664 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S   ++Q H+ ++K G+     VS +L+  +  +R  +  LA ++FN + + +   +N++
Sbjct: 213 SVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR--SLGLAFQLFNDIPERDSVTFNAL 270

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           L    +       I+L+ +M  V  +P +FT+  +  A    +  + G QVH  VVK   
Sbjct: 271 LTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNF 330

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +V V ++ +  Y+    V +A ++  +  + D I +N L+  Y   G ++ + ELFK 
Sbjct: 331 VWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKE 390

Query: 225 TK----DKNTGSY-----------------------------------NAMISGFARFGR 245
            +    D+    +                                   N+++  +A+ G 
Sbjct: 391 LQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGE 450

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           F EA ++F+++  +  + W+A+I  Y + G +++ L++F EMQR KI       + ++ A
Sbjct: 451 FGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRA 510

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CASL +L  G  +H H+  +    +   G+ALVDMYAKCG +  A ++F++M ++   +W
Sbjct: 511 CASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSW 570

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NA+I   A +G  D  + LF +M R  ++PD ++   +L AC+H G+++ GLQ    M +
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTR 630

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +Y + P+ EHY   +D+L R G   EAE++++ MP EP+  +W ++L +C  H   E  +
Sbjct: 631 IYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAK 690

Query: 486 RLGKILLEME---------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           +    L  M+                     D+V K++K M+ERG+K  P  S +++   
Sbjct: 691 KAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHK 750

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
            H F   D +HPQ++EI   L ++ EK+  +GY P+SS  L ++DEE K  + KYHSE++
Sbjct: 751 THVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERI 810

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIAF  I+T  G+ I V+KNLR C DCH+A K+ISK+ +R+I VRD  R+HHFR+G C+C
Sbjct: 811 AIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTC 870

Query: 651 NDFW 654
            D+W
Sbjct: 871 RDYW 874



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 199/445 (44%), Gaps = 41/445 (9%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           N   A  +F+S+ +     W  ++    ++N+      L+ EM      P+  +  T+  
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
             +  ++  E  QVH+HV+K G    + V +S +  Y     +  A Q+ +D  + D + 
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDK--------------------------------- 228
           +NAL+ GY K G    A  LF   ++                                  
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 229 ------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                 N    NA++  +++  R  EA KLF EM + D I+++ ++  Y  +G  KE+LE
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F E+Q      R F  + +L+  A    LD G  IH          + ++G +LVDMYA
Sbjct: 387 LFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYA 446

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           KCG    A ++F D+ ++    W AMI      G  +D ++LF +MQR K+  D  T+A 
Sbjct: 447 KCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYAS 506

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           ++ ACA    +  G Q  +++    G    V     +VD+  + G + +A ++   MP+ 
Sbjct: 507 IVRACASLASLTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR 565

Query: 463 PNAAVWEALLGACRKHGEVEFGERL 487
            N+  W AL+ A  ++G+ +   RL
Sbjct: 566 -NSVSWNALISAYAQNGDGDCTLRL 589



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
           I+  G   +    N L+  +L+ GD+ GA++LF     KN  S N MI G+ + G   EA
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R LF+ M  +  +TW+ +I GY ++  ++EA  +F EM R  I P    L+ +L+     
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            ++++   +H HV +       V+  +L+D Y K   L +A+++F D+  ++  T+NA++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G +  G   +AI LFFKMQ    RP   TFA +L+A      I+ G Q   ++ +   +
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
              V     ++D   +   + EA ++   MP
Sbjct: 332 -WNVFVANALLDFYSKHDRVVEASKLFYEMP 361



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/434 (21%), Positives = 185/434 (42%), Gaps = 75/434 (17%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N    P      +   A K  + V A ++K G   + +  +  ++ +   G +N AR++ 
Sbjct: 65  NNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLF 124

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI-------------- 237
           D+    ++   N +I GY+K G++  A+ LF S   +   ++  +I              
Sbjct: 125 DEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFG 184

Query: 238 ---------------------SGFARFGRFEEARK------------------------- 251
                                SGF  F    E R+                         
Sbjct: 185 LFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC 244

Query: 252 ----------LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                     LFN++ ++D +T++A++ GY+K+G+ +EA+ +F +MQ    +P +F  + 
Sbjct: 245 KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAA 304

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L A   L  ++ G  +H  V + +   +  +  AL+D Y+K  R+  A K+F +M   +
Sbjct: 305 ILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVD 364

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             ++N ++   A +GR  +++ELF ++Q          FA +LS  A +  +D G Q  +
Sbjct: 365 GISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHS 424

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
                  I  E+     +VD+  + G   EA  + S + ++ ++  W A++ +  + G  
Sbjct: 425 QTIVTDAIS-EILVGNSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPWTAMISSYVQKGLH 482

Query: 482 EFGERLGKILLEME 495
           E G    K+ +EM+
Sbjct: 483 EDGL---KLFVEMQ 493



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 153/355 (43%), Gaps = 16/355 (4%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+  T      F   T+L I     +      +Q H+  + +    +  V  +LV  +A
Sbjct: 389 KELQFTGFDRRNFPFATLLSIAAISLNLDIG--RQIHSQTIVTDAISEILVGNSLVDMYA 446

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
             +   F  A ++F+ +   +   W +++ + ++       + L+ EM       +  TY
Sbjct: 447 --KCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
            ++ +AC+   +   G Q+H+H++ +G   +V   S+ + MYA  G +  A Q+  +   
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPV 564

Query: 197 SDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
            + + WNALI  Y + GD +    LF    +S    ++ S  +++   +  G  EE  + 
Sbjct: 565 RNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQY 624

Query: 253 FNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           F+ M    ++      +++ ID   + G + EA ++  +M     +P + + S VL +C 
Sbjct: 625 FDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQM---PFEPDEIMWSSVLNSCG 681

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
                +      + +    +  DA     + ++YA  G  D   KV + M+ + V
Sbjct: 682 IHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGV 736


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/684 (33%), Positives = 360/684 (52%), Gaps = 69/684 (10%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           +  L I  T C T  Q  +  H ++ +SG  Q   VS  L   +A  R  +   A +VF+
Sbjct: 228 RITLVIALTVCATIRQ-AQAIHFIVRESGLEQTLVVSTALASAYA--RLGHLYQAKEVFD 284

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
              + +V  WN++L A  +H        L++ M+     P+K T       CS   + + 
Sbjct: 285 RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCS---SLRF 341

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G  +H   ++ GL  D+ + ++ + MY   G   +AR +       + + WN +I G  +
Sbjct: 342 GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR-IPCNAVSWNTMIAGSSQ 400

Query: 212 CGDIEGAKELFKSTK------------------DKNTGSYNAMISG-------------- 239
            G ++ A ELF+  +                    N     AM  G              
Sbjct: 401 KGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 240 -----------FARFGRFEEARKLFNE--MNDK-DEITWSAIIDGYTKDGYYKEALEVFN 285
                      +A  G  +EA   F    M D+ D ++W+AII   ++ G+ K AL  F 
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M    + P +     VL ACA   AL +G  +HDH++ + +  +  + TAL  MY +CG
Sbjct: 521 RMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCG 580

Query: 346 RLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
            L+ A ++FE + + ++V  +NAMI   + +G A +A++LF++MQ+E  RPD  +F  VL
Sbjct: 581 SLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC+H G+ D G +    M+Q YGI P  +HY C VD+LGRAG+LA+AEE+I  M ++P 
Sbjct: 641 SACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT 700

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
             VW+ LLGACRK+ +V+ G     ++ E++P +               + D+ A++R  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M+ RG++   G S I++   +HEF  GD SHP+ +EIY  L+++  +++  GY P++  V
Sbjct: 761 MESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L  +DE EKE     HSE+LAIA G +++    T+RV+KNLRVCEDCH+ATK ISK+  +
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMSSSTD-TVRVMKNLRVCEDCHNATKFISKIVNK 879

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +I+VRD  R+HHF +G CSC D+W
Sbjct: 880 EIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 190/435 (43%), Gaps = 50/435 (11%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+ +   +   W +++ A  EH +  R I ++  M     + +  T+  V KAC+   
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
              +G  +HA +V++GL G   + +  + +Y   GCV  A  +L +  + D++ WNA I 
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASA-MLLFEKMERDLVSWNAAIA 201

Query: 208 GYLKCGDIEGAKELFK------------------------------------STKDKNTG 231
              + GD+  A ELF+                                    S  ++   
Sbjct: 202 ANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLV 261

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
              A+ S +AR G   +A+++F+   ++D ++W+A++  Y + G+  EA  +F  M  + 
Sbjct: 262 VSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEG 321

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I P K  L      C+S   L  G  IH       +  D VLG AL+DMY +CG  + A 
Sbjct: 322 ISPSKVTLVNASTGCSS---LRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEAR 378

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            +F+ +    V +WN MI G +  G+   A+ELF +MQ E M P R T+  +L A A   
Sbjct: 379 HLFKRIPCNAV-SWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNP 437

Query: 412 MIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
              R +     +        Y  +P +     +V +    G + EA        ME    
Sbjct: 438 EEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 467 V--WEALLGACRKHG 479
           V  W A++ +  +HG
Sbjct: 496 VVSWNAIISSLSQHG 510



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L QG  IH  +   S+ ++  LG  L+ +Y KC  L    +VF  +++++  +W  +I  
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
              HG+A  AI +F +MQ+E +R D +TF  VL ACA  G + +G     ++ +  G+  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVE-SGLKG 161

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +      ++ + G  G +A A  +     ME +   W A + A  + G++
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFE--KMERDLVSWNAAIAANAQSGDL 209


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/667 (32%), Positives = 355/667 (53%), Gaps = 69/667 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-- 107
           KQ H  +++ G   +  +  ++V  +  SR +  ELA  VF+S    N+  WNS++ +  
Sbjct: 252 KQIHGYVIRFGRVSNTSICNSIVSMY--SRNNRLELARAVFDSTEDHNLASWNSIISSYA 309

Query: 108 ---CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK----------------------- 141
              CL  N  W    L+ EM     KP+  T+ ++                         
Sbjct: 310 VNGCL--NGAW---DLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGF 364

Query: 142 ---ACSITEADKE---------GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
              +CSIT A +          G ++H +++++ L  DV+V +S + MY    C+ KA  
Sbjct: 365 KPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEV 424

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGR 245
           +       ++  WN+LI GY   G  + A++L    K++       ++N+++SG++  G 
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGC 484

Query: 246 FEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            EEA  + N +       + ++W+A+I G  ++  Y +AL+ F++MQ + +KP    +S 
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTIST 544

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L ACA    L +G  IH    ++    D  + TAL+DMY+K G+L +A +VF ++K K 
Sbjct: 545 LLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKT 604

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +  WN M+ G A++G  ++   LF  M +  +RPD ITF  +LS C ++G++  G +   
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M+  Y I+P +EHY C+VDLLG+AG+L EA + I +MP + +A++W A+L ACR H ++
Sbjct: 665 SMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDI 724

Query: 482 EFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  E   + L  +EP N               R  DV ++++ M   G+K     S I V
Sbjct: 725 KIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQV 784

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
              IH F T   SHP+  EIY  L ++I ++K  GY P+++ V  +ID+ EKE     H+
Sbjct: 785 RQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHT 844

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLA+ +G +    G  IRV+KN R+C+DCH+A K IS    R+I +RD  R+HHF NG+
Sbjct: 845 EKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 648 CSCNDFW 654
           CSCND W
Sbjct: 905 CSCNDRW 911



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 196/441 (44%), Gaps = 35/441 (7%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + HA +LK G   D ++S  L+  +   +    + A +VF+       F+WN+++ A L 
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLY--EKCLGIDRANQVFDETPLQEDFLWNTIVMANLR 209

Query: 111 HNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +E W   + L   M    +K    T   + +AC    A  EG Q+H +V++ G   +  
Sbjct: 210 -SERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTS 268

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           + +S + MY+    +  AR + D     ++  WN++I  Y   G + GA +LF+  +  +
Sbjct: 269 ICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSS 328

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                                         D ITW++++ G+   G Y+  L     +Q 
Sbjct: 329 I---------------------------KPDIITWNSLLSGHLLQGSYENVLTNIRSLQS 361

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
              KP    ++  L A   LG  + G  IH ++ R+ +  D  + T+LVDMY K   L+ 
Sbjct: 362 AGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEK 421

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A  VF   K K +  WN++I G    G  D+A +L  +M+ E ++ D +T+  ++S  + 
Sbjct: 422 AEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSM 481

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME---PNAA 466
           +G  +  L  +  ++ + G+ P V  +  ++    +     +A +  S M  E   PN+ 
Sbjct: 482 SGCSEEALAVINRIKSL-GLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNST 540

Query: 467 VWEALLGACRKHGEVEFGERL 487
               LL AC     ++ GE +
Sbjct: 541 TISTLLRACAGPSLLKKGEEI 561



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 198/502 (39%), Gaps = 90/502 (17%)

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHN-EPWRVISLYSEMVGVDSKPNKFTYPT 138
           F +FE A KVF      N  +WNS L        +   ++ ++ E+     K +      
Sbjct: 77  FGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTV 136

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V K C        G++VHA ++K G   DVH+        +C                  
Sbjct: 137 VLKICLALMELWLGMEVHACLLKRGFQVDVHL--------SC------------------ 170

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
                ALI+ Y KC  I+                                A ++F+E   
Sbjct: 171 -----ALINLYEKCLGID-------------------------------RANQVFDETPL 194

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +++  W+ I+    +   +++ALE+   MQ    K     +  +L AC  L AL++G  I
Sbjct: 195 QEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQI 254

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H +V R     +  +  ++V MY++  RL++A  VF+  +   + +WN++I   A++G  
Sbjct: 255 HGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCL 314

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           + A +LF +M+   ++PD IT+  +LS     G  +  L  +  +Q   G  P+      
Sbjct: 315 NGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSA-GFKPDSCSITS 373

Query: 439 IVDLLGRAGYLAEAEEV---ISSMPMEPNAAVWEALL-----GACRKHGEVEFGERLGK- 489
            +  +   GY    +E+   I    +E +  V  +L+       C +  EV F     K 
Sbjct: 374 ALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKN 433

Query: 490 -----ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                 L+         D+  K+   MKE GIK +    ++  N ++  +     S   +
Sbjct: 434 ICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKAD----LVTWNSLVSGYSMSGCSEEAL 489

Query: 545 KEIYLMLKKIIEKLKMEGYSPN 566
                    +I ++K  G +PN
Sbjct: 490 --------AVINRIKSLGLTPN 503



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK-DGYYKEALEVFNEMQRDKIK 293
           +M+  +  FG FE A K+F     ++ + W++ ++ +    G   E LEVF E+    +K
Sbjct: 69  SMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVK 128

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                L+ VL  C +L  L  G+ +H  + +    VD  L  AL+++Y KC  +D A +V
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQV 188

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F++  ++E F WN ++       R +DA+EL  +MQ    +    T   +L AC     +
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRAL 248

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G Q   Y+ + +G          IV +  R   L  A  V  S   + N A W +++ 
Sbjct: 249 NEGKQIHGYVIR-FGRVSNTSICNSIVSMYSRNNRLELARAVFDSTE-DHNLASWNSIIS 306

Query: 474 ACRKHG 479
           +   +G
Sbjct: 307 SYAVNG 312


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/486 (39%), Positives = 289/486 (59%), Gaps = 15/486 (3%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
           V+ AR++ +   +   + W +++ GY   G IE A+E F+    K   + NAMI GF   
Sbjct: 219 VDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEV 278

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR++F+ M D+D  TW  +I  Y + G+  EAL++F +MQ+  ++P    L  +L
Sbjct: 279 GEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISIL 338

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           + CA+L +L  G  +H H+ R     D  + + L+ MY KCG L  A  VF+    K++ 
Sbjct: 339 SVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDII 398

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN++I G A HG  ++A+++F +M      P+++T   +L+AC++AG ++ GL+    M
Sbjct: 399 MWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESM 458

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +  + + P VEHY C VD+LGRAG + +A E+I SM ++P+A VW ALLGAC+ H  ++ 
Sbjct: 459 ESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDL 518

Query: 484 GERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
            E   K L E EP N               +  DVA +RK M+   +   PG S I+V  
Sbjct: 519 AEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGK 578

Query: 530 VIHEF-RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSE 588
            +H F R G  +HP+   I +ML+K    L+  GYSP+ S VL D+DEEEK  +   HSE
Sbjct: 579 KVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSE 638

Query: 589 KLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKC 648
           +LA+A+G +    G  IRV+KNLRVC DCH+A KLISKV +R+II+RD  R+HHF NG+C
Sbjct: 639 RLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGEC 698

Query: 649 SCNDFW 654
           SC D+W
Sbjct: 699 SCRDYW 704



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 155/323 (47%), Gaps = 28/323 (8%)

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           +S +  Y   G   +ARQ+ D+ S+ +V+ WN L+ GY+K   I  A+ +F+   ++N  
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S+ AM+ G+ + G   EA  LF  M +++E++W+ +  G   DG   +A ++++ M    
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMM---- 167

Query: 292 IKPRKFVLSC--VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             P K V++   ++      G +D+   I D ++  ++    V  T ++  Y +  R+D+
Sbjct: 168 --PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDV 221

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC--VLSAC 407
           A K+FE M  K   +W +M+ G  + GR +DA E F  M      P +   AC  ++   
Sbjct: 222 ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM------PMKPVIACNAMIVGF 275

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPN 464
              G I +  +    M+     D +   +  ++    R G+  EA ++ + M    + P+
Sbjct: 276 GEVGEISKARRVFDLME-----DRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330

Query: 465 AAVWEALLGACRKHGEVEFGERL 487
                ++L  C     +++G ++
Sbjct: 331 FPSLISILSVCATLASLQYGRQV 353



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 143/306 (46%), Gaps = 20/306 (6%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN 234
           I   +  G +N+AR+  D      +  WN+++ GY   G  + A++LF    ++N  S+N
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIK 293
            ++SG+ +     EAR +F  M +++ ++W+A++ GY ++G   EA  +F  M +R+++ 
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVS 143

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                 + +       G +D+   ++D +       D V  T ++    + GR+D A  +
Sbjct: 144 -----WTVMFGGLIDDGRIDKARKLYDMMP----VKDVVASTNMIGGLCREGRVDEARLI 194

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F++M+ + V TW  MI G   + R D A +LF  M  +      +++  +L     +G I
Sbjct: 195 FDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRI 250

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           +   +    M     + P +     IV   G  G +++A  V   M    NA  W  ++ 
Sbjct: 251 EDAEEFFEVMP----MKPVIACNAMIVG-FGEVGEISKARRVFDLMEDRDNAT-WRGMIK 304

Query: 474 ACRKHG 479
           A  + G
Sbjct: 305 AYERKG 310



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 136/279 (48%), Gaps = 22/279 (7%)

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           + G I  A++ F S + K  GS+N+++SG+   G  +EAR+LF+EM++++ ++W+ ++ G
Sbjct: 29  RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSG 88

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y K+    EA  VF  M    +     ++   +     +G  +   W     +RN +   
Sbjct: 89  YIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQE-GMVGEAESLFW--RMPERNEVSWT 145

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            + G  + D     GR+D A K+++ M +K+V     MIGGL   GR D+A  L F   R
Sbjct: 146 VMFGGLIDD-----GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEA-RLIFDEMR 199

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR--AGY 448
           E+   + +T+  +++       +D         ++++ + PE         LLG   +G 
Sbjct: 200 ER---NVVTWTTMITGYRQNNRVD-------VARKLFEVMPEKTEVSWTSMLLGYTLSGR 249

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           + +AEE    MPM+P  A   A++    + GE+    R+
Sbjct: 250 IEDAEEFFEVMPMKPVIAC-NAMIVGFGEVGEISKARRV 287



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 19/298 (6%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAV---ILKSGHFQDHYVSGTLVKCHAN----SRFSNFE 84
           + + +++  K   SW  +   + +   I  +  F +      ++ C+A            
Sbjct: 223 RKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEIS 282

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A +VF+ +   +   W  +++A          + L+++M     +P+  +  ++   C+
Sbjct: 283 KARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              + + G QVHAH+V+     DV+V S  + MY   G + KA+ + D  S  D+I WN+
Sbjct: 343 TLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNS 402

Query: 205 LIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I GY   G  E A ++F     S    N  +  A+++  +  G+ EE  ++F  M  K 
Sbjct: 403 IISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKF 462

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            +T     +S  +D   + G   +A+E+   M    IKP   V   +L AC +   LD
Sbjct: 463 CVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT---IKPDATVWGALLGACKTHSRLD 517


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/479 (39%), Positives = 293/479 (61%), Gaps = 28/479 (5%)

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           N ++DGY+KCG +  A+ +F+  ++ +  S+  ++ G  +    E  + +F+EM +++E+
Sbjct: 152 NGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEV 211

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRD---KIKPRKFVLSCVLAACASLGALDQGIWIH 319
            W+ +I GY   G+ KEA  +  EM              L  VL+AC+  G +  G W+H
Sbjct: 212 AWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVH 271

Query: 320 DH-VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
            + VK     +  ++GT+LVDMYAKCGR+  A  VF  M  + V  WNAM+ GLAMHG  
Sbjct: 272 CYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMG 331

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
              +E+F  M  E+++PD +TF  +LS+C+H+G++++G Q    +++ YGI PE+EHY C
Sbjct: 332 KVVVEMFACMV-EEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYAC 390

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGRAG L EAE+++  +P+ PN  V  +LLGAC  HG++  GE++ + L++M+P N
Sbjct: 391 MVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLN 450

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          + D    +RK++K RGI+  PG S I V+G +H F  GD SHP+ 
Sbjct: 451 TEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRT 510

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSS-QVLFDIDE--------EEKETAPKYHSEKLAIAFG 595
            +IY+ L  +I KL++ GY PN++ QVLF            EE E     HSEKLA+ FG
Sbjct: 511 ADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALCFG 570

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            ++T   + + + KNLR+C+DCHSA K+ S ++KR+I+VRDR R+H F+ G CSC+D+W
Sbjct: 571 LMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 125/297 (42%), Gaps = 48/297 (16%)

Query: 234 NAMISGFARFGRFEEARKLFNEM--NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           NA++  +A       ARKLF+ +  + KD + ++A+I    +  +  +AL  + +M++  
Sbjct: 53  NALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRA 108

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           +      L C L AC+ LG  +    +H  V +        +   ++D Y KCG +  A 
Sbjct: 109 LPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEAR 168

Query: 352 KVFEDMKMKEVFTWNAMIGGLA--------------MHGRADDAIELFFK---------- 387
           +VFE+++   V +W  ++ G+               M  R + A  +  K          
Sbjct: 169 RVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKE 228

Query: 388 ---MQREKMRP-------DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
              + +E +         + IT   VLSAC+ +G +  G     Y  +  G D  V    
Sbjct: 229 AFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGT 288

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
            +VD+  + G ++ A  V   MP   N   W A+L     HG       +GK+++EM
Sbjct: 289 SLVDMYAKCGRISAALMVFRHMPRR-NVVAWNAMLCGLAMHG-------MGKVVVEM 337



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 25/292 (8%)

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV---GVDSKPNKFTYPTVFKACSI 145
           VF+ + + N   W  +++  +          L  EMV   G     N  T  +V  ACS 
Sbjct: 201 VFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQ 260

Query: 146 TEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
           +     G  VH + VK  G    V V +S + MYA  G ++ A  +     + +V+ WNA
Sbjct: 261 SGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNA 320

Query: 205 LIDGYLKCGDIEGAKELFKSTKDK---NTGSYNAMISGFARFGRFEEARKLFNEMND--- 258
           ++ G    G  +   E+F    ++   +  ++ A++S  +  G  E+  + F+++     
Sbjct: 321 MLCGLAMHGMGKVVVEMFACMVEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYG 380

Query: 259 -KDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
            + EI  ++ ++D   + G  +EA ++  ++    I P + VL  +L AC + G L  G 
Sbjct: 381 IRPEIEHYACMVDLLGRAGRLEEAEDLVKKL---PIPPNEVVLGSLLGACYAHGKLRLG- 436

Query: 317 WIHDHVKRNSICVDAV---LGTALVDMYAKCGRLDMA---WKVFEDMKMKEV 362
              + + R  + +D +       L +MYA CG+ D A    KV ++  +++V
Sbjct: 437 ---EKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKV 485



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 12/194 (6%)

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVD--AVLGTALVDMYAKCGRLDMAWKVF 354
            +   +L  CA   A+  G  +H     + +     + L  AL+ +YA C     A K+F
Sbjct: 13  LIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLF 72

Query: 355 EDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           + +    K+   + A+I          DA+  + +M++  +  D +   C L AC+  G 
Sbjct: 73  DRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLG- 127

Query: 413 IDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            D  L    ++  + +G     +    ++D   + G + EA  V   +  EP+   W  +
Sbjct: 128 -DSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIE-EPSVVSWTVV 185

Query: 472 LGACRKHGEVEFGE 485
           L    K   VE G+
Sbjct: 186 LEGVVKCEGVESGK 199


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/659 (32%), Positives = 350/659 (53%), Gaps = 56/659 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA+++ +G+    +++  LV  +  S+    + ALK+F+++ + N+  W +++    
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMY--SKCGELDHALKLFDTMPQRNLVSWTAMISGLS 82

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++++    I  +  M      P +F + +  +AC+   + + G Q+H   +K G+  ++ 
Sbjct: 83  QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELF 142

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+   MY+  G +  A ++ ++    D + W A+IDGY K G+ E A   FK   D+ 
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 230 T--------------GSY-------------------------NAMISGFARFGRFEEAR 250
                          G+                          NA+   +++ G  E A 
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESAS 262

Query: 251 KLFN-EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            +F  +   ++ ++++ +IDGY +    ++ L VF E++R  I+P +F  S ++ ACA+ 
Sbjct: 263 NVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQ 322

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            AL+QG  +H  V + +   D  + + LVDMY KCG L+ A + F+++       WN+++
Sbjct: 323 AALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLV 382

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                HG   DAI+ F +M    ++P+ ITF  +L+ C+HAG+++ GL     M + YG+
Sbjct: 383 SVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  EHY C++DLLGRAG L EA+E I+ MP EPNA  W + LGACR HG+ E G+   +
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAE 502

Query: 490 ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L+++EP+N              R+ +DV  +R  M++  +K  PG S +DV    H F 
Sbjct: 503 KLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFG 562

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             D SH +   IY  L  +++++K  GY P +  V  D+D+  KE     HSE++A+AF 
Sbjct: 563 AEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFA 622

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I+   G  I V KNLRVC DCHSA K ISKV  R IIVRD  R+HHF +G CSC D+W
Sbjct: 623 LISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 197/435 (45%), Gaps = 64/435 (14%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V +  + T+  + G Q+HA ++  G      + +  + MY+  G ++ A ++ D   + +
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 199 VICWNALIDGYLK----------------CGD-------------------IEGAKELFK 223
           ++ W A+I G  +                CG+                   IE  K++  
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 224 STKDKNTGSYNAMISG----FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                  GS   + S     +++ G   +A K+F EM  KDE++W+A+IDGY+K G ++E
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 190

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL  F +M  +++   + VL   L AC +L A   G  +H  V +     D  +G AL D
Sbjct: 191 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD 250

Query: 340 MYAKCGRLDMAWKVFE-DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           MY+K G ++ A  VF  D + + V ++  +I G     + +  + +F +++R+ + P+  
Sbjct: 251 MYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 310

Query: 399 TFACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           TF+ ++ ACA+   +++G Q     M+  +  DP V     +VD+ G+ G L  A +   
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEHAIQAFD 368

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIK 517
            +  +P    W +L+    +HG       LGK             D  K  + M +RG+K
Sbjct: 369 EIG-DPTEIAWNSLVSVFGQHG-------LGK-------------DAIKFFERMVDRGVK 407

Query: 518 TNPGSSMIDVNGVIH 532
            N  + +  + G  H
Sbjct: 408 PNAITFISLLTGCSH 422


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/680 (33%), Positives = 347/680 (51%), Gaps = 101/680 (14%)

Query: 32  KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL---ALK 88
           KT+L   N     S    KQ HA IL++       +S  L      S +SN  L   +L 
Sbjct: 9   KTLLQ--NPSSVKSKSQAKQLHAQILRTSLPSPSLLSTIL------SIYSNLNLLHDSLL 60

Query: 89  VFNSV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +FNS+   P    W S++R    H      +S + +M+     P+   +P+V K+C++ +
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC---VNKARQILDDGSKSDVICWNA 204
             + G  VH  +++ G+  D++  ++ + MY+ F     VN  +++ D+G  SDV     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVY---- 176

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
                              S K+K +    ++             RK+F  M  +D ++W
Sbjct: 177 -------------------SKKEKESYYLGSL-------------RKVFEMMPKRDIVSW 204

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +I G  ++G +++AL +  EM    ++P  F LS VL   A    L +G  IH +  R
Sbjct: 205 NTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR 264

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N    D  +G++L+DMYAKC R+D + +VF  +   +  +WN++I G   +G  D+ ++ 
Sbjct: 265 NGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKF 324

Query: 385 FFKMQREKMRPDRITF-----AC-------------------------------VLSACA 408
           F +M   K++P+ ++F     AC                               VL+AC+
Sbjct: 325 FQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACS 384

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           HAG++D   +    M Q Y I P +EHY  + DLLGR G L EA E IS M +EP  +VW
Sbjct: 385 HAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVW 444

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
             LL ACR H  +E  E++ K L  ++PQN               R  D  K+R  M+++
Sbjct: 445 STLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDK 504

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           G+K  P  S I++   +H F  GD SHP    I   LK ++E+++ EGY  ++++VL D+
Sbjct: 505 GMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDV 564

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           +EE+K      HSE+LAI FG I+T  G TIRV KNLRVC DCH+ATK ISK+  R+I+V
Sbjct: 565 EEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVV 624

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF++GKCSC DFW
Sbjct: 625 RDNSRFHHFKDGKCSCGDFW 644


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/657 (32%), Positives = 343/657 (52%), Gaps = 56/657 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H +I + G   D YVS  LV  +   +  + E A  VF +    NVF W  ++  C 
Sbjct: 54  RRIHQLIRRVGLGSDVYVSNHLVMMYG--KCGSLEEARLVFEATPAKNVFSWTILITVCA 111

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI-TEADKEGVQVHAHVVKNGLCGDV 168
           +H      ++L+ EM+    +P+  ++     ACS   E    G  +HA + + G    V
Sbjct: 112 QHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAV 171

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------LKCGDIE 216
              +S + MY+  G + ++ +  +  ++ + + WNA+I  +            L+   +E
Sbjct: 172 VATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLE 231

Query: 217 GAK----------ELFKSTKDKNTGSY---------------NAMISGFARFGRFEEARK 251
           G +            +       +  Y               N +++ + + G  ++A  
Sbjct: 232 GIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNVILNMYGKCGCLQDAEA 291

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F  M+  D I W+ +I  Y++ G+  EAL  +  MQ + + P  +    V+ ACA+LG 
Sbjct: 292 MFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGD 351

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           ++ G  +H  +   +  V   L  +LV+MY KCG LD+A  +F D   K   TWNAMIG 
Sbjct: 352 MEVGKQVHRRLGDRAFQVTE-LANSLVNMYGKCGILDVARSIF-DKTAKGSVTWNAMIGA 409

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A H     A ELF  M+ +   P  ITF  VLSACA+AG+ +        MQQ +G+ P
Sbjct: 410 YAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRP 469

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
              HYGC+V+ LG+AG L++AE +I  MP EP+   W + L  CR HG+++ G+   K  
Sbjct: 470 GGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGA 529

Query: 492 LEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           + ++P+                   + +++RKLM +RGI+ N G S+I +   ++EF  G
Sbjct: 530 IRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAG 589

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D S+P+ KEI+  LK++ +++K  GY P+ + V  D++  +KE     HSE+LAIAFG I
Sbjct: 590 DQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGII 649

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +T  G  +R++KNLRVC DCH+ TKL SK+ +R+IIVRD  R+HHF+NG CSC DFW
Sbjct: 650 STSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 48/381 (12%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V ++C+   A  EG ++H  + + GL  DV+V +  + MY   G + +AR + +     +
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKN--------TGSYNA--------------- 235
           V  W  LI    + G  + A  LF     +         T + NA               
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 236 -----------------MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                            ++S +++ G  EE+ K F  M + + ++W+A+I  + +     
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGL 219

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EAL    +M  + I+        +++A      L    +IHD + R     D V    ++
Sbjct: 220 EALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVIL 277

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MY KCG L  A  +F+ M   +V  WN MI   + HG   +A+  +  MQ E + PD  
Sbjct: 278 NMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDY 337

Query: 399 TFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           T+  V+ ACA  G ++ G Q    +  + + +    E    +V++ G+ G L  A  +  
Sbjct: 338 TYVSVIDACATLGDMEVGKQVHRRLGDRAFQV---TELANSLVNMYGKCGILDVARSIFD 394

Query: 458 SMPMEPNAAVWEALLGACRKH 478
                  +  W A++GA  +H
Sbjct: 395 KTA--KGSVTWNAMIGAYAQH 413



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 2/193 (1%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           V+ +CA LGAL +G  IH  ++R  +  D  +   LV MY KCG L+ A  VFE    K 
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           VF+W  +I   A HGR+ +A+ LF++M ++ ++P  ++F   ++AC+         +AL 
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE- 480
            + + YG    V     +V +  + G L E+ +   SM  E NA  W A++ A  +H   
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMT-ELNAVSWNAMIAAFAEHRRG 218

Query: 481 VEFGERLGKILLE 493
           +E    L K+ LE
Sbjct: 219 LEALRTLQKMFLE 231


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/642 (34%), Positives = 348/642 (54%), Gaps = 54/642 (8%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-----------CLEH 111
           +D ++   L+  H  ++F     A  VF+++ K +V+ WN++L A            +  
Sbjct: 56  KDSFIHNQLL--HLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFD 113

Query: 112 NEPWRVISLYSEMVGVDS--------------------KPNKFTYPTVFKACSITEADKE 151
             P+R    Y+ ++   +                    +P ++++    +ACS     + 
Sbjct: 114 QMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRH 173

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G Q+H  +V   L  +  V+++   MYA  G ++KAR + D     +V+ WN +I GY+K
Sbjct: 174 GKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVK 233

Query: 212 CGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
            G+      LF   +      +  + + +++ + R GR ++AR LF ++  KDEI W+ +
Sbjct: 234 MGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTM 293

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I GY ++G  ++A  +F +M R  +KP  + +S ++++CA L +L  G  +H  V    I
Sbjct: 294 IVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGI 353

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
               ++ +ALVDMY KCG    A  +FE M ++ V TWNAMI G A +G+  +A+ L+ +
Sbjct: 354 DNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYER 413

Query: 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
           MQ+E  +PD ITF  VLSAC +A M+  G +    + + +GI P ++HY C++ LLGR+G
Sbjct: 414 MQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSG 472

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------- 499
            + +A ++I  MP EPN  +W  LL  C K G+++  E     L E++P+N         
Sbjct: 473 SVDKAVDLIQGMPHEPNYRIWSTLLSVCAK-GDLKNAELAASHLFELDPRNAGPYIMLSN 531

Query: 500 ------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKK 553
                 R  DVA +R LMKE+  K     S ++V   +H F + D  HP+V +IY  L +
Sbjct: 532 LYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNR 591

Query: 554 IIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG-ATIRVIKNLR 612
           +I  L+  GY+P+++ VL ++ EEEK  +  YHSEKLA+AF  I    G A IR+IKN+R
Sbjct: 592 LISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIR 651

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VC+DCH   K  S    R II+RD  R+HHF  GKCSCND W
Sbjct: 652 VCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/572 (34%), Positives = 321/572 (56%), Gaps = 54/572 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y T+ K C++ +   +G  VH H++++    D+ + ++ + MYA  G + +AR++ D   
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMP 113

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF--------------------------------- 222
           + D + W  LI GY +      A  LF                                 
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ 173

Query: 223 ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                 K   D N    +A++  + R+G  ++A+ +F+ +  +++++W+A+I G+ +   
Sbjct: 174 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCG 233

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            ++ALE+F  M R+  +P  F  + +  AC+S G L+QG W+H ++ ++   + A  G  
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 293

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAK G +  A K+F+ +  ++V +WN+++   A HG  ++A+  F +M+R  +RP+
Sbjct: 294 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I+F  VL+AC+H+G++D G      M++  GI  E  HY  IVDLLGRAG L  A   I
Sbjct: 354 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFI 412

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP+EP AA+W+ALL ACR H   E G    + + E++P +               R +
Sbjct: 413 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 472

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           D A++RK MKE G+K  P  S +++   IH F   D  HPQ +EI    ++++ K+K  G
Sbjct: 473 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 532

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P++S V+  +D++E+E   +YHSEK+A+AF  +NT PG+TI + KN+RVC DCHSA K
Sbjct: 533 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIK 592

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           L SK   R+IIVRD  R+HHF++G CSC D+W
Sbjct: 593 LASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 200/429 (46%), Gaps = 53/429 (12%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKC 74
           ++  + IP       T+L     KC T ++ L Q    H  +++S    D  ++ TL+  
Sbjct: 41  DLEGSYIPVDRRFYNTLL----KKC-TVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNM 95

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF 134
           +A  +  + E A KVF+ + + +   W +++    +H+ P+  + L+++M+     PN+F
Sbjct: 96  YA--KCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEF 153

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T  +V KA +       G Q+H   VK G   +VHV S+ + +Y  +G ++ A+ + D  
Sbjct: 154 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 213

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFK----------------------STKDKNTGS 232
              + + WNALI G+ +    E A ELF+                      ST     G 
Sbjct: 214 ESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGK 273

Query: 233 Y-----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           +                 N ++  +A+ G   +ARK+F+ +  +D ++W++++  Y + G
Sbjct: 274 WVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHG 333

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
           +  EA+  F EM+R  I+P +     VL AC+  G LD+G   ++ +K++ I ++A    
Sbjct: 334 FGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYV 393

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRAD---DAIELFFKMQRE 391
            +VD+  + G L+ A +  E+M ++     W A++    MH   +    A E  F++  +
Sbjct: 394 TIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 453

Query: 392 KMRPDRITF 400
              P  I +
Sbjct: 454 DPGPHVILY 462



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           N+++   I   +   + +L  C     L QG  +H H+ ++    D V+   L++MYAKC
Sbjct: 40  NDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKC 99

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+ A KVF+ M  ++  TW  +I G + H R  DA+ LF +M R    P+  T + V+
Sbjct: 100 GSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVI 159

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            A A       G Q   +  +  G D  V     ++DL  R G + +A+ V  ++    N
Sbjct: 160 KAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR-N 217

Query: 465 AAVWEALL-GACRKHG 479
              W AL+ G  R+ G
Sbjct: 218 DVSWNALIAGHARRCG 233


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/730 (30%), Positives = 366/730 (50%), Gaps = 119/730 (16%)

Query: 42  CHTSWQ-HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           C T  Q   K+ H +I+KS    + ++   L+  +A S+  N   A  VF+ + +PN F 
Sbjct: 16  CETRNQTQAKKLHCLIIKSLTNPETFLYNNLI--NAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDS------------------------------- 129
           WN++L A  +  +   +  ++S M   D                                
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 130 -KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
              N+ T+ T+    S       G Q+H  +VK G    V V SS + MYA  G V+ A 
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 189 QILDDGSKSDV-------------------------------ICWNALIDGYLK------ 211
           Q+ D+  + +V                               I W  +I G ++      
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 212 --------------------------CGDIEGAKE-------LFKSTKDKNTGSYNAMIS 238
                                     CG +   KE       + +S  + N    +A++ 
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
            + +      A  +F  M +K+ ++W+A++ GY ++G+ +EA+ VF +MQR+ I+P  F 
Sbjct: 314 MYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L  V+++CA+L +L++G   H     + +     +  AL+ +Y KCG ++ + ++F++M 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            ++  +W A++ G A  G+A++ I+LF +M  + ++PD +TF  VLSAC+ AG+++RG Q
Sbjct: 434 FRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQ 493

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M + +GI P  +HY C++DL GRAG L EA+  I+ MP  P++  W  LL +CR +
Sbjct: 494 YFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLY 553

Query: 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSM 524
           G  E G+   + LLE++PQN               +  +VA++R+ M+E+G +  PG S 
Sbjct: 554 GNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           I     ++ F   D S P   +IY  L+K+  K+  EGY P++S VL D+++ EK     
Sbjct: 614 IKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLN 673

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
           +HSEKLAIAFG +    G  IRV+KNLRVC DCH+ATK ISK+ +R+I+VRD VR+H F+
Sbjct: 674 HHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFK 733

Query: 645 NGKCSCNDFW 654
           +G CSC DFW
Sbjct: 734 DGTCSCGDFW 743



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 217/489 (44%), Gaps = 102/489 (20%)

Query: 106 RACLEHNEPWRV---------------ISLYSEMVGVDSK----------------PNKF 134
           + C E     +                  LY+ ++   SK                PN F
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 135 TYPTVFKACSITE------------ADKEGV-------------------QVHAHVVKNG 163
           ++ T+  A S +              +++GV                   + +  ++K+G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 164 LCGDVHVK-SSGIQMYACFGCVNKAR----QILDDGSKSDVICWNALIDGYLKCGDIEGA 218
           +     +  S+ + + +  GCV+  R    QI+  G  + V   ++L+D Y K G +  A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
            ++F   +++N   YN MI+G  R G  +++++LF+ M ++D I+W+ +I G  ++G   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EA+++F +M+++ +   ++    VL AC  L AL +G  IH  + R+    +  +G+ALV
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMY KC  +  A  VF+ M  K V +W AM+ G   +G +++A+ +F  MQR  + PD  
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   V+S+CA+   ++ G Q       + G+   +     ++ L G+ G + ++ ++   
Sbjct: 373 TLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 459 MP----------------------------------MEPNAAVWEALLGACRKHGEVEFG 484
           M                                   ++P+A  + A+L AC + G VE G
Sbjct: 432 MSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERG 491

Query: 485 ERLGKILLE 493
           ++  + +L+
Sbjct: 492 QQYFESMLK 500



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 66/394 (16%)

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           K C  T    +  ++H  ++K+    +  + ++ I  Y+  G +  AR + D   + +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
            WN ++  Y K GD+   +E+F    +++  S+N++ISG+  +G   EA K +N M    
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSM---- 128

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
                       KDG                +   +   S +L   +S G +D G  IH 
Sbjct: 129 -----------MKDGV---------------LNLNRITFSTMLLLVSSQGCVDLGRQIHG 162

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED------------------------ 356
            + +        +G++LVDMYAK G + +A +VF++                        
Sbjct: 163 QIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKD 222

Query: 357 -------MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
                  MK ++  +W  MI GL  +G   +A++LF  M++E M  D+ TF  VL+AC  
Sbjct: 223 SKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGG 282

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
              +  G +  T + +  G +  V     +VD+  +   +  AE V   M    N   W 
Sbjct: 283 LRALKEGKEIHTLIIRS-GYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMA-NKNVVSWT 340

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
           A+L     +G+  F E   ++  +M+      DD
Sbjct: 341 AMLVG---YGQNGFSEEAVRVFCDMQRNGIEPDD 371


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/436 (41%), Positives = 274/436 (62%), Gaps = 17/436 (3%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK--DGYYKEALEVFNEM-QRDKI 292
           ++  F R GR    R++F+ +   D   W+A++  Y +         LE+F+ M     +
Sbjct: 161 LLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTV 220

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P +  L  V+ AC  LGAL  G+W H ++ +  + ++ ++ TALV+MYA CGRLD+A  
Sbjct: 221 RPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEH 280

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF     ++   +NAM+ GLA HG    A++LF +M+   +  D +T   VL +CAHA +
Sbjct: 281 VFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAEL 340

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D GL+    M+  +GI+P +EHYGC+VD+L RAG L +AE++I  MP+ PNAA++ +L+
Sbjct: 341 VDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLI 400

Query: 473 GACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKT 518
            AC  HG +E GER+   L + +P +               R ++  K RK MK  GI  
Sbjct: 401 RACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMGIDK 460

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
           +PGSS++D+NGV+HEF  GD +HP  KEIY M+++I  +L   G+  +++ VLFD++EE+
Sbjct: 461 SPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHRSSTTSVLFDVEEED 520

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           K     YHSE+LAI F  I +DPG  IR+IKNLRVC DCH + KL+S+V+ R+I++RDR 
Sbjct: 521 KADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRT 580

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHFR G+CSC DFW
Sbjct: 581 RFHHFREGECSCGDFW 596



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLE--HNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACS 144
           +VF+ +  P++  WN++L A +    +    ++ L+S M+ + + +PN+ T   V  AC 
Sbjct: 176 RVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTVRPNEITLVAVIGACG 235

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A   GV  H ++VK  L  +  V ++ ++MYA  G ++ A  +    S  D  C+NA
Sbjct: 236 ELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNA 295

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKD 260
           ++ G    G    A +LF   +         +  +++   A     +E  + F++M  + 
Sbjct: 296 MLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEF 355

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
            I      +  ++D  ++ G   +A ++ +EM    I P   +   ++ AC   G L+ G
Sbjct: 356 GIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEM---PIVPNAAIYRSLIRACDIHGNLELG 412

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
             +   ++++    D+     + ++YA+  R + A K  ++MK
Sbjct: 413 ERMITELRQHDP-DDSGNHVLIANLYARMNRWEEAKKTRKEMK 454



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 44/239 (18%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGD--IEGAKELFKSTKDKNTGSYN----- 234
           G +   R++ D  +  D+  WNAL+  Y++C     +   ELF       T   N     
Sbjct: 169 GRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTVRPNEITLV 228

Query: 235 -----------------------------------AMISGFARFGRFEEARKLFNEMNDK 259
                                              A++  +A  GR + A  +F   +D+
Sbjct: 229 AVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDR 288

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D   ++A++ G    G+ + AL++F+ M+   +      +  VL +CA    +D+G+   
Sbjct: 289 DTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYF 348

Query: 320 DHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHG 376
           D ++    I         +VDM ++ GRLD A K+  +M +      + ++I    +HG
Sbjct: 349 DKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDIHG 407



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 23/232 (9%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
           AH  ++K     +  V+  LV+ +A       +LA  VF +    +   +N++L+    H
Sbjct: 246 AHTYLVKRQLAINRIVTTALVEMYAGC--GRLDLAEHVFATASDRDTRCYNAMLQGLAAH 303

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV-VKNGLCGDVHV 170
                 + L+  M G     +  T  +V  +C+  E   EG++    + ++ G+      
Sbjct: 304 GHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEFGI------ 357

Query: 171 KSSGIQMYACFGCVNKARQILDDGSK----SDVICWNALIDGYLKCGDIEGAKEL----- 221
               I+ Y C   +      LDD  K      ++   A+    ++  DI G  EL     
Sbjct: 358 -EPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLIRACDIHGNLELGERMI 416

Query: 222 --FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK--DEITWSAIID 269
              +     ++G++  + + +AR  R+EEA+K   EM     D+   S+++D
Sbjct: 417 TELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMGIDKSPGSSLLD 468


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/592 (34%), Positives = 335/592 (56%), Gaps = 23/592 (3%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH 61
           + K  T  + + + P  IS    P S  S K  L      C T    L    A ++K+  
Sbjct: 9   ALKQLTRSIGNFVSPPSISMPLQPPSRPSFKQTLLNRIKNCSTI-NELHGLCASMIKTNA 67

Query: 62  FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLY 121
            QD ++    +   A+   ++    +  F  +  PNVFV+N++++  +    P+R +  Y
Sbjct: 68  IQDCFLVHQFIS--ASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCY 125

Query: 122 SEMVG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
             M+   +  P  +T+ ++ KAC+   A + G  VH H+ K G    + V+++ +  Y+ 
Sbjct: 126 VHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSK 185

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGF 240
              +++AR++ D+  + D   W A++    + GD++ A++LF+   ++NT ++N MI G+
Sbjct: 186 LEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGY 245

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            R G  E A  LFN+M  KD I+W+ +I  Y+++  Y++AL +++EM+ + I P +  +S
Sbjct: 246 TRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMS 305

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            V +ACA +GAL+ G  IH +V    + +D  +G+ALVDMYAKCG LD++  +F  +  K
Sbjct: 306 TVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDK 365

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
            ++ WNA+I GLA+HG A+ A+ +F  M+REK+ P+ +TF  +LSAC HAG++D G    
Sbjct: 366 NLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRF 425

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             M + Y I P++ HYGC+VD+L ++GYL EA E+I SM  EPN+ +W ALL  C+ HG 
Sbjct: 426 LSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGN 485

Query: 481 VEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI-KTNPGSSMI 525
            E  E   + L+ +EP N              +   +VA +R +MKE+G+ K  PGSS I
Sbjct: 486 CEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 545

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY----SPNSSQVLFD 573
           ++ G IH+F     SHP   +IY +L ++  +LK+ GY    S  S+ +LF 
Sbjct: 546 ELEGTIHQFSASADSHPDSDKIYFILTELDGQLKLAGYILEPSVCSTALLFS 597


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 277/436 (63%), Gaps = 16/436 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEM-NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
             +++ +AR      AR +F+ M  DK+ + WS++I GY++ G   EAL +F +MQ   +
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P +  +  V++ACA  GALD G W+H  + R  I VD  L TAL+DMYAKCG ++ A  
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF+ M  ++   W+AMI GLAMHG A+DA+ LF +M + K+RP+ +TF  VLSACAH+G+
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGL 345

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D G +    MQ++ GI+  +E+YGC+VDLL R+G L EA   ++ MP+ PN+ +W  LL
Sbjct: 346 VDDGRRYWCTMQEL-GIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLL 404

Query: 473 GACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKT 518
            A +    ++  E   + L E+EPQN               + D V  MRK MK+  +  
Sbjct: 405 VASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTV 464

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
             G S I++NG +H+F   DGSHP++K+I L+L++I +++   G+ P ++ VL D+ EEE
Sbjct: 465 VAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEEE 524

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KE A   HSE+LAIA+G + T     IRV+KNLR C DCH  TK+ISK + R+IIVRDRV
Sbjct: 525 KEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDRV 584

Query: 639 RYHHFRNGKCSCNDFW 654
           R+H F  G CSCNDFW
Sbjct: 585 RFHRFIGGSCSCNDFW 600



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 65/328 (19%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS-----LYSEMVGVDSK-PNKFTYPTV 139
           A  +F+ + +P  F +NS++RA           +     LY  M+   S  PN FT   V
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFV 136

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK-SD 198
            KAC+   A  EG Q+HA    +GL    +V++  + +YA    V  AR + D   +  +
Sbjct: 137 LKACT---ALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKN 193

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK------DKNT----------------GSY--- 233
           ++ W+++I GY + G +  A  LF+  +      D+ T                G +   
Sbjct: 194 LVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA 253

Query: 234 --------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                          A+I  +A+ G  E A+ +F+ M ++D   WSA+I G    G  ++
Sbjct: 254 FIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAED 313

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT---- 335
           AL +F+ M + K++P       VL+ACA  G +D G        R   C    LG     
Sbjct: 314 ALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDG--------RRYWCTMQELGIEASM 365

Query: 336 ----ALVDMYAKCGRLDMAWKVFEDMKM 359
                +VD+  + G LD A+     M +
Sbjct: 366 ENYGCMVDLLCRSGLLDEAFSFVTGMPI 393



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 11/255 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA I + G   D  +S  L+  +A       E A  VF+S+ + +   W++++    
Sbjct: 249 KWVHAFIDRKGITVDLELSTALIDMYAKCGL--IERAKSVFDSMVERDTKAWSAMIVGLA 306

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      + L+S M+ +  +PN  T+  V  AC+ +    +G +    + + G+   + 
Sbjct: 307 MHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASME 366

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNALIDGYLKCGDIE----GAKELFKS 224
                + +    G +++A   +     S + + W  L+        I+     ++ LF+ 
Sbjct: 367 NYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFE- 425

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
            + +N  +Y  + + +A   +++  R +  +M D + +T  A       +GY  +   V 
Sbjct: 426 LEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNN-VTVVAGCSSIEINGYLHKF--VV 482

Query: 285 NEMQRDKIKPRKFVL 299
           ++    +IK  + VL
Sbjct: 483 SDGSHPEIKKIRLVL 497


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 301/535 (56%), Gaps = 21/535 (3%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P     P  FK+C+ T+    G Q+H+   + GL G+V V  S I MYA  G  + A Q+
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 69

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST-----KDKNTGSYNAMIS--GFARF 243
            ++    DV+ WNA+I G+   G    A ++F+          + G+  +++   G AR 
Sbjct: 70  FEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARV 129

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
                 + +F+EM  K  I+W+A++  YT +  + EA+E+F  MQ+D I+P    L+ VL
Sbjct: 130 EDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVL 189

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            +C  + AL  G  IH+ +KR  +C   +L  AL+DMYA CG L  A  VF+ M  ++V 
Sbjct: 190 PSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVV 249

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W ++I     HG   +AI+LF KM  + + PD I F  +L+AC+HAG++D G      M
Sbjct: 250 SWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSM 309

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              + I P++EHY C+VDLLGRAG + EA + I  MP++PN  VW ALLGACR H  ++ 
Sbjct: 310 TSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDI 369

Query: 484 GERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           G      LL + P+                R  DV+ +R +M+ +GIK  PG S  ++  
Sbjct: 370 GLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGD 429

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
            +H F  GD SHPQ K IY  L +++ +++  GY+P     L D++EE+KE     HSEK
Sbjct: 430 RVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEK 489

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
           LAIAF  INT+PG  IR+  NLR C DCH A KLIS +  R+II++D  R H+ +
Sbjct: 490 LAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 133/306 (43%), Gaps = 16/306 (5%)

Query: 69  GTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
            +++     +R  +  L   VF+ +    +  WN++L     +      + L+  M    
Sbjct: 118 ASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDG 177

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
            +P+  T  TV  +C    A   G ++H  + +  +C  + ++++ + MYA  GC+ +AR
Sbjct: 178 IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEAR 237

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST----KDKNTGSYNAMISGFARFG 244
            + D     DV+ W ++I  Y + G    A +LF+       + ++ ++ A+++  +  G
Sbjct: 238 DVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAG 297

Query: 245 RFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
             +  +  F  M  +  I      ++ ++D   + G  +EA +    M    IKP + V 
Sbjct: 298 LLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM---PIKPNERVW 354

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR---LDMAWKVFED 356
             +L AC     +D G+   D + R +          L ++YA+ GR   + M   V E 
Sbjct: 355 GALLGACRIHSNMDIGLLAADSLLRLAPKQTGYY-VLLSNIYARAGRWADVSMVRSVMES 413

Query: 357 MKMKEV 362
             +K++
Sbjct: 414 KGIKKL 419


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 325/603 (53%), Gaps = 61/603 (10%)

Query: 106 RACLEHNEPWRVI----SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           R C + + P R +    SL S  +  DS     TY  + K C    A  EG  +  H+  
Sbjct: 35  RLCYQRDLP-RAMKAMDSLQSHGLWADSA----TYSELIKCCISNRAVHEGNLICRHLYF 89

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           NG    + + +  I MY  F  +N A Q+ D   + +VI W  +I  Y KC   + A EL
Sbjct: 90  NGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149

Query: 222 F----KSTKDKNTGSYN--------------------------------AMISGFARFGR 245
                +     N  +Y+                                A+I  FA+ G 
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E+A  +F+EM   D I W++II G+ ++     ALE+F  M+R      +  L+ VL A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C  L  L+ G+  H H+ +     D +L  ALVDMY KCG L+ A +VF  MK ++V TW
Sbjct: 270 CTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           + MI GLA +G + +A++LF +M+    +P+ IT   VL AC+HAG+++ G      M++
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +YGIDP  EHYGC++DLLG+AG L +A ++++ M  EP+A  W  LLGACR    +   E
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447

Query: 486 RLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
              K ++ ++P++              ++ D V ++R  M++RGIK  PG S I+VN  I
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  GD SHPQ+ E+   L ++I +L   GY P ++ VL D++ E+ E + ++HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +AFG +       IR+ KNLR+C DCH   KL SK+  R I++RD +RYHHF++GKCSC 
Sbjct: 568 LAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCG 627

Query: 652 DFW 654
           D+W
Sbjct: 628 DYW 630



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 24/236 (10%)

Query: 265 SAIIDGYTKDGYYKE---ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           + ++  +T+  Y ++   A++  + +Q   +       S ++  C S  A+ +G  I  H
Sbjct: 27  TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           +  N       L   L++MY K   L+ A ++F+ M  + V +W  MI   +       A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 382 IELFFKMQREKMRPDRITFACVLSAC--------AHAGMIDRGLQALTYMQQMYGIDPEV 433
           +EL   M R+ +RP+  T++ VL +C         H G+I  GL++  +++         
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR--------- 197

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
                ++D+  + G   +A  V   M +  +A VW +++G   ++   +    L K
Sbjct: 198 ---SALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFK 249


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 333/601 (55%), Gaps = 72/601 (11%)

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           +V+ +Y +M G   +P+ F YP + K+     A   G+  HAHV+K G   D  V+++ I
Sbjct: 13  KVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLGHGSDAFVRNAVI 67

Query: 176 QMYA--------------CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            MYA               +    +A+ + D   + +VI W A++ GY K  D+E A+  
Sbjct: 68  DMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRY 127

Query: 222 FKSTKDKNTGSYNAMISGFA---------------------------------RFGRFEE 248
           F    +++  S+NAM+SG+A                                 R G  + 
Sbjct: 128 FDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDS 187

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACA 307
           ARKLFN M  ++ +TW+++I GY ++G    A+E+F EM    K+ P +  +  V++AC 
Sbjct: 188 ARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 247

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            LGAL+ G W+   +  N I +      A++ MY++CG ++ A +VF++M  ++V ++N 
Sbjct: 248 HLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 307

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I G A HG   +AI L   M+   + PDR+TF  VL+AC+HAG+++ G +    ++   
Sbjct: 308 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK--- 364

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
             DP ++HY C+VDLLGR G L +A+  +  MPMEP+A V+ +LL A R H +VE GE  
Sbjct: 365 --DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELA 422

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              L E+EP N               R  DV ++R+ MK+ G+K   G S ++  G +H+
Sbjct: 423 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHK 482

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F   D SH +  +IY +L ++ +K++  GY  + S VL D++EEEKE     HSEKLAI 
Sbjct: 483 FIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAIC 542

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           +  + ++ GA IRV+KNLRVC DCH+A K+ISK+  R IIVRD  R+H F +G CSC D+
Sbjct: 543 YALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDY 602

Query: 654 W 654
           W
Sbjct: 603 W 603



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 150/345 (43%), Gaps = 40/345 (11%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKF 134
           A  R  + + A K+FN++   NV  WNS++    ++ +    I L+ EM+      P++ 
Sbjct: 178 AYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 237

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T  +V  AC    A + G  V   + +N +   +   ++ I MY+  G +  A+++  + 
Sbjct: 238 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 297

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEAR 250
           +  DV+ +N LI G+   G    A  L  + K    + +  ++  +++  +  G  EE R
Sbjct: 298 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 357

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F  + D     ++ ++D   + G  ++A      M+R  ++P   V   +L A     
Sbjct: 358 KVFESIKDPAIDHYACMVDLLGRVGELEDAKRT---MERMPMEPHAGVYGSLLNASR--- 411

Query: 311 ALDQGIWIHDHVKRNSICVDAVLG---------TALVDMYAKCGRLDMAWKVFEDMK--- 358
                  IH  V+   +  + +             L ++YA  GR     ++ E MK   
Sbjct: 412 -------IHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGG 464

Query: 359 MKEVFTWNAMIGGLAMHG---------RADDAIELFFKMQREKMR 394
           +K+   W+ +  G  +H          R+DD  +L  ++ R+KMR
Sbjct: 465 VKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIEL-RKKMR 508


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/647 (34%), Positives = 332/647 (51%), Gaps = 85/647 (13%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P S      IL +L++   T    L  A A +L S    D     TLV     S      
Sbjct: 57  PPSTLLSNRILHLLSSHPAT----LPDALA-LLSSLPSTDVCSYNTLVAALGRSP-RGLA 110

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV---GVDSKPNKFTYPTVFK 141
            A  +F+ + + + F W++++ A + H +P   +++Y  M+   G     N+FT  +   
Sbjct: 111 SARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALA 170

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           A +     + G ++H HVV+ G+                                +D + 
Sbjct: 171 AATAARCARAGRELHCHVVRRGI-------------------------------DADAVV 199

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           W+AL D Y                               A+FGR ++AR +F+ M  +D 
Sbjct: 200 WSALADMY-------------------------------AKFGRLDDARSVFDRMPVRDV 228

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           ++W+A++D Y   G   E   +F  M R  I P +F  + VL ACA   +   G  +H  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + ++        G+ALV MY+K G +  A +VF  M   ++ +W AMI G A +G+ D+A
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +  F  +     RPD +TF  VLSACAHAG++D+GL     ++  YGI+   +HY C++D
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC 501
           LL R+G    AE++I++MP++PN  +W +LLG CR H  V       + L E+EP+N   
Sbjct: 409 LLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPAT 468

Query: 502 --------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                         D+V  MR+ M+ RGI   P SS I+V   +H F  GD SHPQ +EI
Sbjct: 469 YVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEI 528

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y +LKK+  K++ EGY  ++  VL D+++E+K+    YHSE+LA+AFG I T  G+ I+V
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKV 588

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLR+C DCH+  KLISK+ +R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/664 (32%), Positives = 349/664 (52%), Gaps = 64/664 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEH 111
           H +++ S    D  VS  L+  +   +  +   A +VF  + +  NV  W+ +  A   H
Sbjct: 81  HQMVVDSRLEIDPKVSNALLNMY--KKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALH 138

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
              W  +  +  M+ +  K  K    T+  ACS     ++G  +H+ +  +G   ++ V 
Sbjct: 139 GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVA 198

Query: 172 SSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYL------------------- 210
           ++ + MY   G V +AR++ D  D +  DV+ WN ++  Y+                   
Sbjct: 199 NAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRP 258

Query: 211 ----------KCGDIEGA-------KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
                      C   E         K++     +KN    NA++S +A+ G   EAR +F
Sbjct: 259 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 318

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-------QRDKIKPRKFVLSCVLAAC 306
           ++M  +  I+W+ II  Y +     EA  +F +M          ++KP       +L AC
Sbjct: 319 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 378

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTW 365
           A + AL+QG  + +      +  D  +GTA+V++Y KCG ++ A ++F+ +    +V  W
Sbjct: 379 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLW 438

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NAMI   A  G++ +A++LF++M+ E +RPD  +F  +L AC+H G+ D+G    T M  
Sbjct: 439 NAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 498

Query: 426 MY-GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            Y  +   ++H+GC+ DLLGR G L EAEE +  +P++P+A  W +LL ACR H +++  
Sbjct: 499 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 558

Query: 485 ERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           + +   LL +EP              + ++   VAK+RK M E+G+K   G S I++   
Sbjct: 559 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKY 618

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H+F TGD +HP+ +EI   L K+  ++K  GY P++  VL  +DE+EKE     HSE+L
Sbjct: 619 MHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERL 678

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIA G I+T  G  +RV KNLRVC DCH+ATKLISK+  R I+VRD  R+H F++GKCSC
Sbjct: 679 AIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSC 738

Query: 651 NDFW 654
            D+W
Sbjct: 739 QDYW 742



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 213/466 (45%), Gaps = 56/466 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A   F+++ + N++ W  ++ A     +    +     M     +P+  T+ T   +C  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNA 204
            E+ ++G+++H  VV + L  D  V ++ + MY   G ++ A+++     ++ +VI W+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 205 LIDGYLKCGDIEGAKELF--------KSTK------------------------------ 226
           +   +   G++  A   F        K+TK                              
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSG 190

Query: 227 -DKNTGSYNAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEV 283
            +      NA+++ + R G  EEARK+F+ M++  +D ++W+ ++  Y  +   K+A+++
Sbjct: 191 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQL 250

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           +  MQ   ++P K     +L+AC+S   +  G  +H  +  + +  + ++G ALV MYAK
Sbjct: 251 YQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 307

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-------QREKMRPD 396
           CG    A  VF+ M+ + + +W  +I          +A  LF +M         ++++PD
Sbjct: 308 CGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPD 367

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            + F  +L+ACA    +++G + ++      G+  +      +V+L G+ G + EA  + 
Sbjct: 368 ALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIF 426

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
            ++   P+  +W A++    + G+    E L K+   ME +  R D
Sbjct: 427 DAVCSRPDVQLWNAMIAVYAQFGQSH--EAL-KLFWRMEMEGVRPD 469



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 2/213 (0%)

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           +A+  F+ +  ++  +W+ ++  +   G  KE L     M++D ++P        L +C 
Sbjct: 10  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWN 366
              +L  GI IH  V  + + +D  +  AL++MY KCG L  A +VF  M + + V +W+
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 129

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            M G  A+HG   +A+  F  M    ++  +     +LSAC+   ++  G + +     +
Sbjct: 130 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RMIHSCIAL 188

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
            G + E+     ++ + GR G + EA +V  +M
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAM 221



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 169/403 (41%), Gaps = 63/403 (15%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWNSV 104
           Q  +  H+ I  SG   +  V+  ++  +   R    E A KVF+++ +   +V  WN +
Sbjct: 177 QDGRMIHSCIALSGFESELLVANAVMTMYG--RCGAVEEARKVFDAMDEALRDVVSWNIM 234

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           L   + ++     I LY  M     +P+K TY ++  ACS  E    G  +H  +V + L
Sbjct: 235 LSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDEL 291

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +V V ++ + MYA  G   +AR + D   +  +I W  +I  Y++   +  A  LF+ 
Sbjct: 292 EKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQ 351

Query: 225 ------------------------------------------------TKDKNTGSYNAM 236
                                                           + DK  G+  A+
Sbjct: 352 MLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGT--AV 409

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           ++ + + G  EEAR++F+ +  + ++  W+A+I  Y + G   EAL++F  M+ + ++P 
Sbjct: 410 VNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPD 469

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVK---RNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            F    +L AC+  G  DQG      +    RN        G  + D+  + GRL  A +
Sbjct: 470 SFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFG-CVADLLGRGGRLKEAEE 528

Query: 353 VFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             E + +K +   W +++     H     A E+  K+ R + R
Sbjct: 529 FLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPR 571



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYA C     A   F+ ++ + +++W  ++   A+ G++ + +    +M+++ +RPD +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           F   L +C     +  G++    + QM       IDP+V +   ++++  + G L+ A+ 
Sbjct: 61  FITALGSCGDPESLRDGIR----IHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKR 114

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEV 481
           V + M    N   W  + GA   HG V
Sbjct: 115 VFAKMERTRNVISWSIMAGAHALHGNV 141


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/619 (34%), Positives = 333/619 (53%), Gaps = 67/619 (10%)

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
           NS H  N+ + ++ LR  L          L+  + G+D+  N   Y TV   C    A +
Sbjct: 28  NSHHVLNIHIHDTRLREAL----------LHMALRGLDT--NFQDYNTVLNECLRKRAIR 75

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           EG +VHAH++K      V++++  I  Y     +  AR + D   + +V+ W A+I  Y 
Sbjct: 76  EGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYS 135

Query: 211 KCGDIEGAKELF----KSTKDKNTGSYNAMI------SGF-------------------- 240
           + G    A  LF    +S  + N  ++  ++      SGF                    
Sbjct: 136 QRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVY 195

Query: 241 ---------ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
                    A+ G+  EAR +F  + ++D ++ +AII GY + G  +EALE+F  +QR+ 
Sbjct: 196 VGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREG 255

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++      + VL A + L ALD G  +H+H+ R+ +    VL  +L+DMY+KCG L  A 
Sbjct: 256 MQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYAR 315

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHA 410
           ++F+ +  + V +WNAM+ G + HG   + +ELF  M  E K++PD +T   VLS C+H 
Sbjct: 316 RIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHG 375

Query: 411 GMIDRGLQALTYMQQ-MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           G+ D+G+     M      + P+ +HYGC+VD+LGRAG +  A E +  MP EP+AA+W 
Sbjct: 376 GLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWG 435

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERG 515
            LLGAC  H  ++ GE +G  LL++EP+N               R +DV  +R LM ++ 
Sbjct: 436 CLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKA 495

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           +   PG S I+++ V+H F   D SHP+ +E+   ++++  + K  GY P+ S VL D+D
Sbjct: 496 VTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVD 555

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           EE+KE     HSEKLA+ FG I T     IRVIKNLR+C DCH+  K  SK++ R++ +R
Sbjct: 556 EEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLR 615

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D+ R+H    GKCSC D+W
Sbjct: 616 DKNRFHRIVGGKCSCGDYW 634



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 189/399 (47%), Gaps = 47/399 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA ++K+ +    Y+   L+  +   +  +   A  VF+ + + NV  W +++ A  
Sbjct: 78  QRVHAHMIKTHYLPCVYLRTRLIVFYV--KCDSLRDARHVFDVMPERNVVSWTAMISAYS 135

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     + +SL+ +M+   ++PN+FT+ TV  +C  +     G Q+H+H++K      V+
Sbjct: 136 QRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVY 195

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V SS + MYA  G +++AR I     + DV+   A+I GY + G  E A ELF+  + + 
Sbjct: 196 VGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREG 255

Query: 230 TGS---------------------------------------YNAMISGFARFGRFEEAR 250
             S                                        N++I  +++ G    AR
Sbjct: 256 MQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYAR 315

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           ++F+ ++++  I+W+A++ GY+K G  +E LE+FN M   +K+KP    +  VL+ C+  
Sbjct: 316 RIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHG 375

Query: 310 GALDQGIWIHDHVKRNSICV--DAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWN 366
           G  D+G+ I   +    I V  D+     +VDM  + GR++ A++  + M  +     W 
Sbjct: 376 GLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWG 435

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            ++G  ++H   D  I  F   Q  ++ P+      +LS
Sbjct: 436 CLLGACSVHSNLD--IGEFVGHQLLQIEPENAGNYVILS 472



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 13/221 (5%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H KQ H  +L+S       +  +L+  +  S+  N   A ++F+++H+  V  WN++L  
Sbjct: 278 HGKQVHNHLLRSEVPSYVVLQNSLIDMY--SKCGNLTYARRIFDTLHERTVISWNAMLVG 335

Query: 108 CLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +H E   V+ L++ M+  +  KP+  T   V   CS    + +G+ +   +    +  
Sbjct: 336 YSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISV 395

Query: 167 DVHVKSSG--IQMYACFGCVNKARQILDDGS-KSDVICWNAL-----IDGYLKCGDIEGA 218
               K  G  + M    G V  A + +     +     W  L     +   L  G+  G 
Sbjct: 396 QPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGH 455

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           + L    + +N G+Y  + + +A  GR+E+ R L N M  K
Sbjct: 456 QLL--QIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKK 494


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 311/536 (58%), Gaps = 48/536 (8%)

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
           P   + L+  ++   + P+   Y     +C+  +      Q+HAH  K G          
Sbjct: 59  PHLALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLA------- 111

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY 233
                                S   V C   L+  Y  CG +  A+ +F    D +  ++
Sbjct: 112 ---------------------SHRRVRC--RLVHAYAVCGMLPHARRVFDGGTDNDMVAW 148

Query: 234 NAMISGFAR-FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDK 291
           N ++ G+A+  G  +  R  F  M  +D ++W+ ++     +G Y EA+ VF EM    +
Sbjct: 149 NCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQE 208

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
            +P +  L  V++A A LGAL QG+W H +V R  + V+  L +AL++MY+KCG L+ A 
Sbjct: 209 CQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAV 268

Query: 352 KVFEDMKMKEVF-TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            VF++++ K    TWNAM+ G   +G +  A+ LF +M+   + P++ITF C+L+AC+H 
Sbjct: 269 YVFDNVRGKRSLDTWNAMLAGFTANGCSGRALALFTRMETTGLMPNKITFNCILNACSHG 328

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G+++ G++    M ++YGI+P++ HYGC+VDL  RAG   +AEE+I  MPMEP+A++ +A
Sbjct: 329 GLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQIMPMEPDASMLKA 388

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI 516
           LLGACR H  +E G++ G  L+E  P +                   V K+RKLM +RG+
Sbjct: 389 LLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSNIYALDGNWGRVHKVRKLMLDRGV 448

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDE 576
              PGSS +++NGVIHEF +GD SH + ++IY ML +I ++LK  GY+P++SQVL DID+
Sbjct: 449 LKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLDEICQQLKSAGYTPDTSQVLLDIDD 508

Query: 577 EE-KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           E+ KE++   HSEKLAIAFG I+T PG  IRV+ NLR+C DCH+A KL+SK++ R+
Sbjct: 509 EDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCHNAIKLLSKIYGRN 564



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           WN+VL  C+ + E    I+++ EM+   + +P++ T  +V  A +   A  +G+  HA+V
Sbjct: 180 WNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYV 239

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIEGA 218
           ++ G+  +  + S+ I MY+  G +  A  + D+   K  +  WNA++ G+   G    A
Sbjct: 240 IRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRA 299

Query: 219 KELFKSTKDKNTG------SYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAI 267
             LF  T+ + TG      ++N +++  +  G  EE  + F  M+     + D   +  +
Sbjct: 300 LALF--TRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCM 357

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +D + + G +++A E+   M    ++P   +L  +L AC +   L+ G
Sbjct: 358 VDLFCRAGMFEKAEEIIQIM---PMEPDASMLKALLGACRTHKNLELG 402



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWNSVLRACLE 110
           AHA +++ G   +  +S  L+  ++   F   E A+ VF++V  K ++  WN++L     
Sbjct: 235 AHAYVIRKGVEVEEKLSSALINMYSKCGF--LEGAVYVFDNVRGKRSLDTWNAMLAGFTA 292

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK-NGLCGDVH 169
           +    R ++L++ M      PNK T+  +  ACS     +EG++    + +  G+  D+ 
Sbjct: 293 NGCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIA 352

Query: 170 VKSSGIQMYACFGCVNKARQIL 191
                + ++   G   KA +I+
Sbjct: 353 HYGCMVDLFCRAGMFEKAEEII 374


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/436 (42%), Positives = 276/436 (63%), Gaps = 15/436 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N+++  +A  G    A K+F++M +KD + W+++I+G+ ++G  +EAL ++ EM    IK
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F +  +L+ACA +GAL  G  +H ++ +  +  +      L+D+YA+CGR++ A  +
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGM 412
           F++M  K   +W ++I GLA++G   +AIELF  M+  E + P  ITF  +L AC+H GM
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +  G +    M++ Y I+P +EH+GC+VDLL RAG + +A E I SMPM+PN  +W  LL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 473 GACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKT 518
           GAC  HG+ +  E     +L++EP +              +R  DV K+RK M   G+K 
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 326

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PG S+++V   +HEF  GD SHPQ   IY  LK++  +L+ EGY P  S V  D++EEE
Sbjct: 327 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE 386

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KE A  YHSEK+AIAF  I+T   + I V+KNLRVC DCH A KL+SKV+ R+I+VRDR 
Sbjct: 387 KENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRS 446

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHF+NG CSC D+W
Sbjct: 447 RFHHFKNGSCSCQDYW 462



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 46/288 (15%)

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G  +H+ V+++G    ++V++S + +YA  G V  A ++ D   + D++ WN++I+G+ +
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 212 CGDIEGAKELFKSTKDK---------------------------------------NTGS 232
            G  E A  L+     K                                       N  S
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 126

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DK 291
            N ++  +AR GR EEA+ LF+EM DK+ ++W+++I G   +G+ KEA+E+F  M+  + 
Sbjct: 127 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEG 186

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDM 349
           + P +     +L AC+  G + +G      ++        +   G  +VD+ A+ G++  
Sbjct: 187 LLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG-CMVDLLARAGQVKK 245

Query: 350 AWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           A++  + M M+  V  W  ++G   +HG +D A   F ++Q  ++ P+
Sbjct: 246 AYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA--EFARIQILQLEPN 291



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 5/181 (2%)

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  V R+       +  +L+ +YA CG +  A+KVF+ M  K++  WN++I G A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G+ ++A+ L+ +M  + ++PD  T   +LSACA  G +  G +   YM ++ G+   + 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNLH 125

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
               ++DL  R G + EA+ +   M ++ N+  W +L+     +G   FG+   ++   M
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG---FGKEAIELFKYM 181

Query: 495 E 495
           E
Sbjct: 182 E 182


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/623 (34%), Positives = 325/623 (52%), Gaps = 54/623 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+S+   +V  WN+++  C  +      + L  +M      PN  T   V      
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +A   G  +H + V+      V V +  + MYA   C+  AR+I D     + + W+A+
Sbjct: 223 AKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAM 282

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNT--------GSY------------------------ 233
           I GY+    ++ A ELF     K+         GS                         
Sbjct: 283 IGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG 342

Query: 234 --------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                   N ++S +A+ G  ++A + F+ MN KD +++SAI+ G  ++G    AL +F 
Sbjct: 343 XVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFR 402

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            MQ   I P    +  VL AC+ L AL  G   H ++       D ++  AL+DMY+KCG
Sbjct: 403 MMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCG 462

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           ++  A +VF  M   ++ +WNAMI G  +HG   +A+ LF  +    ++PD ITF C+LS
Sbjct: 463 KISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLS 522

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           +C+H+G++  G      M + + I P +EH  C+VD+LGRAG + EA   I +MP EP+ 
Sbjct: 523 SCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDV 582

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
            +W ALL ACR H  +E GE + K +  + P++               R DD A +R   
Sbjct: 583 RIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQ 642

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K+ G+K  PG S I++NG++H F  GD SH Q+ +I   L++++ ++K  GY    S V 
Sbjct: 643 KDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVF 702

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++EEEKE    YHSEKLAIAFG +N   G  I V KNLRVC DCH+A K ++ + KR+
Sbjct: 703 QDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKRE 762

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I VRD  R+HHF+NG C+C DFW
Sbjct: 763 ITVRDANRFHHFKNGTCNCGDFW 785



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 228/471 (48%), Gaps = 46/471 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H   LK+    D  V   L + + +   +   LA ++F+ +  P+V +WN ++RA  
Sbjct: 28  KKIHQHFLKNTSNADSSVLHKLTRLYLSC--NQVVLARRLFDEIPNPSVILWNQIIRA-Y 84

Query: 110 EHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             N P+   I LY  M+ +  +PNK+TYP V KACS   A ++GV++H+H    GL  DV
Sbjct: 85  AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDV 144

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ +  YA  G + +A+++    S  DV+ WNA+I G    G  + A +L    +++
Sbjct: 145 FVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEE 204

Query: 229 NTGSYNAMISG---------------------------------------FARFGRFEEA 249
                ++ I G                                       +A+      A
Sbjct: 205 GICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYA 264

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACAS 308
           RK+F+ M  ++E++WSA+I GY      KEALE+F++M  +D + P    L  VL ACA 
Sbjct: 265 RKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAK 324

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L  L +G  +H ++ +    +D +LG  L+ MYAKCG +D A + F+ M  K+  +++A+
Sbjct: 325 LTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAI 384

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G   +G A  A+ +F  MQ   + PD  T   VL AC+H   +  G  +  Y+  + G
Sbjct: 385 VSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL-IVRG 443

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              +      ++D+  + G ++ A EV + M    +   W A++     HG
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHG 493



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 176/388 (45%), Gaps = 44/388 (11%)

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           K  Y  + +AC  +++  E  ++H H +KN    D  V     ++Y     V  AR++ D
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKST------KDKNTGSY------------- 233
           +     VI WN +I  Y   G  +GA +L+ S        +K T  +             
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 234 --------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                                A++  +A+ G   EA++LF+ M+ +D + W+A+I G + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G   +A+++  +MQ + I P    +  VL       AL  G  +H +  R S     V+
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-QREK 392
           GT L+DMYAKC  L  A K+F+ M ++   +W+AMIGG        +A+ELF +M  ++ 
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           M P  +T   VL ACA    + RG +   Y+ ++ G   ++     ++ +  + G + +A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL-GXVLDILLGNTLLSMYAKCGVIDDA 366

Query: 453 EEVISSMPMEPNAAV-WEALLGACRKHG 479
                   M P  +V + A++  C ++G
Sbjct: 367 IRFFDX--MNPKDSVSFSAIVSGCVQNG 392



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           +   K+T + ++   + +   +    +   AR+LF+E+ +   I W+ II  Y  +G + 
Sbjct: 32  QHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFD 91

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            A+++++ M    ++P K+    VL AC+ L A++ G+ IH H K   +  D  + TALV
Sbjct: 92  GAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALV 151

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           D YAKCG L  A ++F  M  ++V  WNAMI G +++G  DDA++L  +MQ E + P+  
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS 211

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL     A  +  G +AL         D  V     ++D+  +   L  A ++   
Sbjct: 212 TIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDV 270

Query: 459 MPMEPNAAVWEALLGA-----CRKHGEVEFGERLGKILLEMEPQN-----RRC---DDVA 505
           M +  N   W A++G      C K     F + + K  ++  P       R C    D++
Sbjct: 271 MGVR-NEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 506 KMRKL 510
           + RKL
Sbjct: 330 RGRKL 334



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L AC    +L +   IH H  +N+   D+ +   L  +Y  C ++ +A ++F+++    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           V  WN +I   A +G  D AI+L+  M    +RP++ T+  VL AC+    I+ G++  +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +  +M+G++ +V     +VD   + G L EA+ + SSM    +   W A++  C  +G  
Sbjct: 134 H-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG-- 189

Query: 482 EFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMI 525
                              CDD  ++   M+E GI   P SS I
Sbjct: 190 ------------------LCDDAVQLIMQMQEEGI--CPNSSTI 213



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 114/271 (42%), Gaps = 38/271 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  I+K G   D  +  TL+  +A  +    + A++ F+ ++  +   +++++  C+
Sbjct: 332 RKLHCYIIKLGXVLDILLGNTLLSMYA--KCGVIDDAIRFFDXMNPKDSVSFSAIVSGCV 389

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      +S++  M      P+  T   V  ACS   A + G   H +++  G   D  
Sbjct: 390 QNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT- 448

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                                        +IC NALID Y KCG I  A+E+F      +
Sbjct: 449 -----------------------------LIC-NALIDMYSKCGKISFAREVFNRMDRHD 478

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEM----NDKDEITWSAIIDGYTKDGYYKEALEVFN 285
             S+NAMI G+   G   EA  LF+++       D+IT+  ++   +  G   E    F+
Sbjct: 479 IVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFD 538

Query: 286 EMQRD-KIKPRKFVLSCVLAACASLGALDQG 315
            M RD  I PR     C++      G +D+ 
Sbjct: 539 AMSRDFSIVPRMEHCICMVDILGRAGLIDEA 569


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 338/594 (56%), Gaps = 27/594 (4%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTS--EFSQKTILDILNTKCHTSWQHLKQAHAVILKS 59
           + K  T  + + + P  IS    P S   F Q  +  I N  C T    L    A ++K+
Sbjct: 106 ALKQLTRSIGNFVSPPSISMPLQPPSCPSFKQTLLNRIKN--CSTI-NELHGLCASMIKT 162

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
              QD ++    +   A+   ++    +  F  +  PNVFV+N++++  +    P+R + 
Sbjct: 163 NAIQDCFLVHQFIS--ASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQ 220

Query: 120 LYSEMVG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            Y  M+   +  P  +T+ ++ KAC+   A + G  VH H+ K G    + V+++ +  Y
Sbjct: 221 CYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFY 280

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238
           +    +++AR++ D+  + D   W A++    + GD++ A++LF+   ++NT ++N MI 
Sbjct: 281 SKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMID 340

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           G+AR G  E A  LFN+M  KD I+W+ +I  Y+++  Y++AL +++EM+ + I P +  
Sbjct: 341 GYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVT 400

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           +S V +ACA +GAL+ G  IH +V    + +D  +G+ALVDMYAKCG LD++  +F  + 
Sbjct: 401 MSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLT 460

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            K ++ WNA+I GLA+HG A+ A+ +F  M+REK+ P+ +TF  +LSAC HAG++D G  
Sbjct: 461 DKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRS 520

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M + Y I P++ HYGC+VD+L ++GYL EA E+I SM  EPN+ +W ALL  C+ H
Sbjct: 521 RFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLH 580

Query: 479 GEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI-KTNPGSS 523
           G  E  E   + L+ +EP N              +   +VA +R +MKE+G+ K  PGSS
Sbjct: 581 GNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSS 640

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY----SPNSSQVLFD 573
            I++ G IH+F     SHP   +IY +L ++  +LK+ GY    S  S+ +LF 
Sbjct: 641 WIELEGTIHQFSASADSHPDSDKIYFVLTELDGQLKLAGYILEPSVCSTALLFS 694


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/459 (42%), Positives = 296/459 (64%), Gaps = 20/459 (4%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKE-LFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           G+ +  +  N+L+  Y   G I+ A+  L+      +  S+N M+SG+ + G    AR++
Sbjct: 108 GALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREV 167

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F  M +++ ++WSA++D   + G + EAL VF+ M R++ +P   VL  VL ACA LGA+
Sbjct: 168 FARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAV 227

Query: 313 DQGIWIHDHVKRNSICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           ++G W+H +++  S      + +L TALVDMY KCG ++ AW+VF+ +  ++V  WNAMI
Sbjct: 228 ERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMI 287

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           GGLAM+G  + A+ELF +M ++   P+  TF  VL AC H G +D G +    MQ  YGI
Sbjct: 288 GGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGI 346

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P+ EHYGC+ DLLGRAG + EAE ++  MPMEP+A+ W AL+ +C+ H ++  GER+GK
Sbjct: 347 KPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGK 406

Query: 490 ILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L+E+EP               N R ++   +R++M++RG K   G S I++NG++HEF 
Sbjct: 407 RLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFI 466

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI-DEEEKETAPKYHSEKLAIAF 594
           +GD  HP  ++IY +L+ I  +L++ GY  ++SQV+ D+ DEE+K  A  YHSE+LA+AF
Sbjct: 467 SGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAF 526

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDII 633
           G +N   G  IR++KNLRVC DCH  +KL+SK+++R+II
Sbjct: 527 GILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREII 565



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 148/332 (44%), Gaps = 23/332 (6%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           K + S   + +A  V+   G   D     T+V  +      +   A +VF  + + N+  
Sbjct: 121 KLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKG--GDLGAAREVFARMPERNLVS 178

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           W++++ AC+   E    + ++  M+  + +P+     +V KAC+   A + G  VH ++ 
Sbjct: 179 WSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLE 238

Query: 161 K---NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
                G  G++ ++++ + MY   GC+  A Q+ D   + DV+ WNA+I G    G  E 
Sbjct: 239 TGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGER 298

Query: 218 AKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIID 269
           A ELF+    K    N  ++ A++      GR +E +++F  M D         +  + D
Sbjct: 299 ALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLAD 358

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
              + G  +EA  +  +M    ++P       ++++C     +   I + + V +  I +
Sbjct: 359 LLGRAGNVEEAEALLLDM---PMEPHASQWGALMSSC----QMHNDINVGERVGKRLIEL 411

Query: 330 DAVLG---TALVDMYAKCGRLDMAWKVFEDMK 358
           +   G     L ++YA  GR + A  + + M+
Sbjct: 412 EPYDGGRYVVLFNLYAVNGRWEEARTIRQMME 443



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A +VF+ VH+ +V +WN+++     +    R + L+  M+     PN+ T+  V  A
Sbjct: 265 MEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCA 324

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ-ILDDGSKSDVIC 201
           C+ T    EG +V   +   G+            +    G V +A   +LD   +     
Sbjct: 325 CTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ 384

Query: 202 WNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           W AL+       DI   + + K     +  + G Y  + + +A  GR+EEAR +   M D
Sbjct: 385 WGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMED 444

Query: 259 K 259
           +
Sbjct: 445 R 445


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 323/572 (56%), Gaps = 54/572 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y ++  AC+   +  +   +HAH+  +   G V + +S I +Y   G V  AR++ D   
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 196 KSDVICWNALIDGY-----------LKCGDIEG---------AKELFKSTKDKNTG---- 231
             D+  W +LI GY           L  G + G         A  L  +    ++G    
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 232 ------SYN---------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                  Y+         A++  +AR GR + A  +F+++  K+ ++W+A+I G+ + G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +  L +F EMQR+  +   F  S V +A A +GAL+QG W+H H+ ++   + A +G  
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           ++DMYAK G +  A KVF+ +  K+V TWN+M+   A +G   +A+  F +M++  +  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
           +ITF  +L+AC+H G++  G Q    M++ Y ++PE++HY  +VDLLGRAG L +A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MPM+P AAVW ALLG+CR H   + G+     + E++P +               + D
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
             A++RK+MK  G+K  P  S +++   +H F   D +HP+ +EIY   ++I  +++  G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y PN+  VL  +DE+E++   +YHSEK+A+AF  IN   GATIR++KN+R+C DCHSA +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            ISKVFKR+I+VRD  R+HHF +G CSC D+W
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 150/333 (45%), Gaps = 40/333 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF+ +   ++  W S++    +++ P   + L   M+    KPN FT+ ++ KA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           + +   G Q+HA  VK     DV+V S+ + MYA  G ++ A  + D     + + WNAL
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 206 IDGYLKCGDIE-------------------------------GAKE--------LFKSTK 226
           I G+ + GD E                               GA E        + KS +
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
             +    N ++  +A+ G   +ARK+F+ ++ KD +TW++++  + + G  +EA+  F E
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEE 357

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M++  +   +     +L AC+  G + +G    D +K  ++  +      +VD+  + G 
Sbjct: 358 MRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGL 417

Query: 347 LDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRA 378
           L+ A      M MK     W A++G   MH  A
Sbjct: 418 LNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA 450



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA+ +K     D YV   L+  +A  R    ++A+ VF+ +   N   WN+++    
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYA--RCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    + +++EM     +   FTY +VF A +   A ++G  VHAH++K+G      
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKST 225
           V ++ + MYA  G +  AR++ D   K DV+ WN+++  + + G     +   +E+ K  
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 362

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFN---EMNDKDEIT-WSAIIDGYTKDGYYKEAL 281
              N  ++ ++++  +  G  +E ++ F+   E N + EI  +  ++D   + G   +AL
Sbjct: 363 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
               +M    +KP   V   +L +C        G +  DHV       D      L ++Y
Sbjct: 423 VFIFKM---PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELD-PDDTGPPVLLYNIY 478

Query: 342 AKCGRLDMAWKVFEDMKMKEV 362
           A  G+ D A +V + MK   V
Sbjct: 479 ASTGQWDAAARVRKMMKATGV 499


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/452 (41%), Positives = 276/452 (61%), Gaps = 18/452 (3%)

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           +FK   D N    NA+I+ +   G  + A KLF+EM  +D ++WS +I    K+    EA
Sbjct: 103 IFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEA 162

Query: 281 LEVFNEMQRDKIKPRKF----VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
           L VF +MQ      R +    ++  V++A +SLG ++ GIW+H  + R  I +   LGTA
Sbjct: 163 LSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTA 222

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L++MY++CG +D + KVF++M  + V TW A+I GLA+HGR+ +A+++F++M+   ++PD
Sbjct: 223 LINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPD 282

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
              F  VL AC+H G+++ G +    M+  +GI P +EHYGC+VDLLGRAG + EA + +
Sbjct: 283 GALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFV 342

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP++PN+ +W  LLGAC  H  +   E+  + ++E++P +                  
Sbjct: 343 EEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWG 402

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
             A +R  MK+  I   PG S + ++ V+HEF +GD  HPQ +EI   L  II+ +K+ G
Sbjct: 403 GKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGG 462

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y+PN+S VL DI +EEKE    YHSEKLA+AF  +      TIRVIKNLR+C DCH   K
Sbjct: 463 YTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMK 522

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             S +F RDII+RDR R+HHF  G CSC DFW
Sbjct: 523 HASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 126/266 (47%), Gaps = 18/266 (6%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           I K G   + +V   L+  + +    + ++A+K+F+ + + ++  W++++   +++N P 
Sbjct: 103 IFKLGFDTNIFVQNALINAYGSR--GSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPA 160

Query: 116 RVISLYSEMV----GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
             +S++ +M      + +  ++    +V  A S     + G+ VH+ +V+ G+   V + 
Sbjct: 161 EALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLG 220

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
           ++ I MY+  G ++++ ++ D+  + +V+ W ALI+G    G    A ++F   K+    
Sbjct: 221 TALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLK 280

Query: 232 SYNAMISGF----ARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
              A+  G     +  G  E+  ++F  M D+  I      +  ++D   + G   EA +
Sbjct: 281 PDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFD 340

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACAS 308
              EM    +KP   +   +L AC +
Sbjct: 341 FVEEM---PLKPNSVIWRTLLGACVN 363



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 124/289 (42%), Gaps = 24/289 (8%)

Query: 221 LFKSTKDKNTGSYNAMI---SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           L K+ + +N  S        S +    R+  A  L       D  +++ II   +  G  
Sbjct: 11  LIKTGQHQNPHSLRPFFLTCSNYPAAARYA-ATVLLRLPTPPDPFSYNTIIKHVSPTG-- 67

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
             A+ +F+ M R+ +    F    +L                  + +     +  +  AL
Sbjct: 68  --AISLFSHMHRNSVPFDHFTFPLILKHHHHHLLHSL-------IFKLGFDTNIFVQNAL 118

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ--REKMRP 395
           ++ Y   G LD+A K+F++M+ +++ +W+ +I  L  +    +A+ +F +MQ     +R 
Sbjct: 119 INAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRDIRN 178

Query: 396 --DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
             DR     V+SA +  G+I+ G+   +++ +M GI   V     ++++  R G +  + 
Sbjct: 179 WLDRAIMLSVISAVSSLGVIELGIWVHSFIVRM-GIVMTVPLGTALINMYSRCGLIDRSV 237

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
           +V   MP E N   W AL+     HG     E L K+  EM+    + D
Sbjct: 238 KVFDEMP-ERNVVTWTALINGLAVHGRSR--EAL-KVFYEMKESGLKPD 282


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/632 (34%), Positives = 334/632 (52%), Gaps = 34/632 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL---- 105
           KQ H V   SG   D +V G++   H   R      A KVF+ +   +V   +++L    
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMF--HMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193

Query: 106 -RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            + CLE      V+ + SEM     + N  ++  +    + +   KE V +   +   G 
Sbjct: 194 RKGCLE-----EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGF 248

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           C D    SS +        +N  R I    +  G   D    +A+ID Y K G + G   
Sbjct: 249 CPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIIS 308

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGY 276
           LF   +    G  NA I+G +R G  ++A ++F    ++    + ++W++II G  ++G 
Sbjct: 309 LFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EALE+F EMQ   +KP    +  +L AC ++ AL  G   H    R  +  +  +G+A
Sbjct: 369 DIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSA 428

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAKCGR++++  VF  M  K +  WN+++ G +MHG+A + + +F  + R +++PD
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD 488

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I+F  +LSAC   G+ D G +    M + YGI P +EHY C+V+LLGRAG L EA ++I
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------D 502
             MP EP++ VW ALL +CR    V+  E   + L  +EP+N                  
Sbjct: 549 KEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWT 608

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +V  +R  M+  G+K NPG S I V   ++    GD SHPQ+ +I   + +I ++++  G
Sbjct: 609 EVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSG 668

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + PN    L D++E+E+E     HSEKLA+ FG +NT  G  ++VIKNLR+C DCH+  K
Sbjct: 669 HRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIK 728

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IS    R+I +RD  R+HHF++G CSC DFW
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 208/471 (44%), Gaps = 74/471 (15%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           QAHA ILKSG   D Y+S  L+  ++N  ++ F  A  V  S+  P ++ ++S++ A  +
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSN--YNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                + I ++S M      P+    P +FK C+   A K G Q+H     +GL  D  V
Sbjct: 94  AKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTK 226
           + S   MY   G +  AR++ D  S  DV+  +AL+  Y + G +E       E+  S  
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           + N  S+N ++SGF R                                GY+KEA+ +F +
Sbjct: 214 EANIVSWNGILSGFNR-------------------------------SGYHKEAVVMFQK 242

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           +      P +  +S VL +      L+ G  IH +V +  +  D  + +A++DMY K G 
Sbjct: 243 IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGH 302

Query: 347 -------------------------------LDMAWKVFEDMKMK----EVFTWNAMIGG 371
                                          +D A ++FE  K +     V +W ++I G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            A +G+  +A+ELF +MQ   ++P+ +T   +L AC +   +  G     +  +++ +D 
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD- 421

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            V     ++D+  + G +  ++ V + MP + N   W +L+     HG+ +
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 170/404 (42%), Gaps = 59/404 (14%)

Query: 228 KNTGSYNA-MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           +N G  +A +I+ ++ +  F +A  +   + D    ++S++I   TK   + +++ VF+ 
Sbjct: 47  QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSR 106

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M    + P   VL  +   CA L A   G  IH     + + +DA +  ++  MY +CGR
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGR 166

Query: 347 LDMAWKVFEDMKMKEVFT-----------------------------------WNAMIGG 371
           +  A KVF+ M  K+V T                                   WN ++ G
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
               G   +A+ +F K+      PD++T + VL +   + M++ G     Y+ +  G+  
Sbjct: 227 FNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQ-GLLK 285

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           +      ++D+ G++G++     + +   M   A V  A +    ++G V+    + ++ 
Sbjct: 286 DKCVISAMIDMYGKSGHVYGIISLFNQFEMM-EAGVCNAYITGLSRNGLVDKALEMFELF 344

Query: 492 LE--ME-------------PQNRRCDDVAKMRKLMKERGIKTNPGS--SMIDVNGVIHEF 534
            E  ME              QN +  +  ++ + M+  G+K N  +  SM+   G I   
Sbjct: 345 KEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAAL 404

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP----NSSQVLFDI 574
             G  +H     ++L+    +    ++ Y+     N SQ++F++
Sbjct: 405 GHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/626 (34%), Positives = 333/626 (53%), Gaps = 83/626 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           + L+Q HA ++ + + +   +   L+    ++R   +   L  F SV  P+ F++NSV++
Sbjct: 23  KQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLL--FLSVPLPDDFLFNSVIK 80

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           +  +   P   ++ Y  M+  +  P+ +T+ +V K+C+   A K G  VH H V +G   
Sbjct: 81  STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGL 140

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D +V++                               AL+  Y KCGD+E          
Sbjct: 141 DTYVQA-------------------------------ALVTFYSKCGDMEA--------- 160

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                                 AR++F+ M +K  + W++++ G+ ++G  ++A+ VF +
Sbjct: 161 ----------------------ARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQ 198

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+    +P       +L+ACA  GA+  G W+H ++    + V+  LGTAL+++Y++CG 
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGD 258

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLS 405
           +  A +VF+ MK   V  W AMI     HG    A++LF KM+ +    P+ +TF  VLS
Sbjct: 259 VGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLS 318

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG+++ G      M + Y + P VEH+ CIVD+LGRAG+L EA   I  +    NA
Sbjct: 319 ACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNA 378

Query: 466 ---AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
              A+W A+LGAC+ H   + G  + K L+ +EP+N               + D+V+ +R
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
             M    ++   G S+I+V    + F  GD SH +  EIY  L+ +I + K  GY+P S 
Sbjct: 439 DRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE 498

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
           +V+  ++EEEKE A +YHSEKLA+AFG + T   A I V+KNLR+CEDCHSA K IS V 
Sbjct: 499 EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDSA-ITVVKNLRICEDCHSAFKYISIVS 557

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R IIVRD++R+HHF+NG CSC D+W
Sbjct: 558 NRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 275/436 (63%), Gaps = 20/436 (4%)

Query: 235 AMISGFARFGRFEEARKLFNEM--NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           +M+S +A  G    AR++F+    N +D   W++++  Y   G Y   L +F +M    +
Sbjct: 140 SMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQM----V 195

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
              +  L  V++AC+ LGALD G W H +  R        LGTAL++MY +CG ++ AW 
Sbjct: 196 ATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWS 255

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF +M  K+V TW+ MI GLA++G   DA++LF +M+   + PD IT   VLSAC+HAGM
Sbjct: 256 VFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGM 315

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +D G   L  M   Y + P +EHYGC+VDLLGRAG L EA  +I ++P + + A+W ALL
Sbjct: 316 VDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALL 375

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
            ACR H  V+ G+     +L+++P +               + D V ++R  MKE  I  
Sbjct: 376 VACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYK 435

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PGSS+++++GV++EF +GD SHPQ   IY ML ++ + L ++G+ P++ +V FDIDEE+
Sbjct: 436 PPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEED 495

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KE     HSEKLA+A G I+T  GA IR++KNLR+CEDCHS  K++S+V+ R I+VRDR 
Sbjct: 496 KEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRN 555

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHF+NG CSC D+W
Sbjct: 556 RFHHFKNGSCSCLDYW 571



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 175/411 (42%), Gaps = 58/411 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA +L+SG   D   +   +   A +    + ++L   +    P  F +N+ +R+  
Sbjct: 13  KPLHARLLRSGALFDDPSAAAPLAASAANSSLPYAISLLQAH----PTTFSYNTTIRSLA 68

Query: 110 EHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACS------ITEADKEGVQVHAHVVKN 162
               P   ++LY  M+    S PN +TYP +  AC+             G  VHA + + 
Sbjct: 69  HGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAGTAVHASLFRR 128

Query: 163 GL-CGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNALIDGYLKCGDIEGAK 219
           GL   D  + +S +  YA  G +  AR++ D    ++ D+  WN+L+  YL  G      
Sbjct: 129 GLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVL 188

Query: 220 ELFKS-------------------------------------TKDKNTGSYNAMISGFAR 242
            LF+                                         +N G+  A+++ + R
Sbjct: 189 RLFRQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGT--ALLNMYMR 246

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G  E A  +F+EM DKD  TWS +I G   +G  ++AL++F EM+   + P    ++ V
Sbjct: 247 CGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAV 306

Query: 303 LAACASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK- 360
           L+AC+  G +D+G +++H       +         +VD+  + G+L+ A  + E +  K 
Sbjct: 307 LSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKA 366

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +V  W A++     H   D  +     M+  K+ P     ACV  + A+A 
Sbjct: 367 DVALWGALLVACRAHKNVD--MGQMAAMEILKLDPHHAG-ACVFLSNAYAA 414


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/530 (38%), Positives = 305/530 (57%), Gaps = 52/530 (9%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------------------- 209
           I MY  FG ++ A+ + D     +V+ W  +I  Y                         
Sbjct: 7   INMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNM 66

Query: 210 -------LKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
                    C  +   ++L     K   D +    +A+I  ++R+G  E A ++F+EM  
Sbjct: 67  FTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVT 126

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
            D + WS+II G+ ++    EAL +F  M+R     ++  L+ VL AC  L  L+ G  +
Sbjct: 127 GDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQV 186

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H HV +     D +L  AL+DMY KCG L+ A  VF  M  K+V +W+ MI GLA +G +
Sbjct: 187 HVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYS 244

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A++LF  M+   ++P+ +T   VL AC+HAG+++ GL     M++++GIDP  EHYGC
Sbjct: 245 KEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGC 304

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGRAG L+EA ++I+ M  EP+A  W ALL ACR H  V+      K +L ++PQ+
Sbjct: 305 MIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQD 364

Query: 499 --------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                         +R +DVA++R+ M  RGIK  PG S I+V+  IH F  GD SHPQ+
Sbjct: 365 AGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQI 424

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +EI + L ++I KL   GY P+++ VL D++ E+ + + +YHSEKLAI FG ++   G T
Sbjct: 425 REINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQT 484

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IR+ KNLR+C DCH  TKL++K+ +R I++RD VRYHHF++G CSC DFW
Sbjct: 485 IRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 162/350 (46%), Gaps = 56/350 (16%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +F     A  VF+ +   NV  W +++ A        + +     M+    +PN FTY +
Sbjct: 12  KFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSS 71

Query: 139 VFKACSITEADKEGV----QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           V +AC       +G+    Q+H  ++K GL  DV V+S+ I +Y+ +G +  A ++ D+ 
Sbjct: 72  VLRAC-------DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEM 124

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTK---------------------------- 226
              D++ W+++I G+ +  D + A  LFK  K                            
Sbjct: 125 VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGR 184

Query: 227 ---------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                    D++    NA++  + + G  E+A  +F  M +KD I+WS +I G  ++GY 
Sbjct: 185 QVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYS 244

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT-- 335
           KEAL++F  M+   IKP    +  VL AC+  G +++G++ + H  +    +D   G   
Sbjct: 245 KEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLY-YFHSMKELFGIDP--GREH 301

Query: 336 --ALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGRADDAI 382
              ++D+  + GRL  A  +  +M+ + +  TW A++    +H   D AI
Sbjct: 302 YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAI 351



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I+ + +FG   +A+ +F++M D++ ++W+ +I  Y+      +ALE    M R+ ++
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F  S VL AC  L  L Q   +H  + +  +  D  + +AL+D+Y++ G L+ A +V
Sbjct: 64  PNMFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F++M   ++  W+++I G A +   D+A+ LF +M+R      + T   VL AC    ++
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
           + G Q   ++ +    D ++     ++D+  + G L +A  V   M +E +   W  ++ 
Sbjct: 181 ELGRQVHVHVLKY---DQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMIA 236

Query: 474 ACRKHG 479
              ++G
Sbjct: 237 GLAQNG 242


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/669 (31%), Positives = 353/669 (52%), Gaps = 62/669 (9%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           H     + Q    I+K G+     V  TLV  +  S  +  +LA ++F  + + +   +N
Sbjct: 162 HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS--NRLDLACQLFKEMPEIDSVSYN 219

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +++    +     + ++L+ EM     KP +FT+  V  A    +    G Q+H+ V+K 
Sbjct: 220 AMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKT 279

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
               +V V ++ +  Y+    V  AR++ D+  + D + +N +I GY   G  + A +LF
Sbjct: 280 NFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLF 339

Query: 223 K---------------------------------------STKDKNTGSYNAMISGFARF 243
           +                                       +T D      N+++  +A+ 
Sbjct: 340 RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 399

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+FEEA  +F  +  +  + W+A+I  Y + G+Y+E L++FN+M++  +   +   + +L
Sbjct: 400 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 459

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            A AS+ +L  G  +H  + ++    +   G+AL+D+YAKCG +  A + F++M  + + 
Sbjct: 460 RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIV 519

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WNAMI   A +G A+  ++ F +M    ++PD ++F  VLSAC+H+G+++ GL     M
Sbjct: 520 SWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSM 579

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
            Q+Y +DP  EHY  +VD+L R+G   EAE++++ MP++P+  +W ++L ACR H   E 
Sbjct: 580 TQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQEL 639

Query: 484 GERLGKILLEME---------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             R    L  ME                   + ++V+K+ K M++RG+K  P  S +++ 
Sbjct: 640 ARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIK 699

Query: 529 GVIHEFRTGDGSHPQVKEIYL---MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
              H F   D  HPQ++EI     ML K +E+L   GY P++S  L + DE+ K  + KY
Sbjct: 700 HETHMFSANDRCHPQIEEIRKKIDMLTKTMEEL---GYKPDTSCALHNEDEKFKVESLKY 756

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSE+LAIAF  I+T  G+ I V+KNLR C DCH+A K+ISK+  R+I VRD  R+HHFR+
Sbjct: 757 HSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRD 816

Query: 646 GKCSCNDFW 654
           G CSC DFW
Sbjct: 817 GFCSCGDFW 825



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 212/473 (44%), Gaps = 44/473 (9%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L QA  +  K  H ++   +  ++  +  S   N   A K+F+ + +     W  ++   
Sbjct: 68  LSQARQLFEKMPH-KNTVSTNMMISGYVKS--GNLGEARKLFDGMVERTAVTWTILIGGY 124

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            + N+      L+ +M    ++P+  T+ T+   C+  E   +  QV   ++K G    +
Sbjct: 125 SQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRL 184

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ +  Y     ++ A Q+  +  + D + +NA+I GY K G  E A  LF   ++ 
Sbjct: 185 IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNS 244

Query: 229 ---------------------------------------NTGSYNAMISGFARFGRFEEA 249
                                                  N    NA++  +++     +A
Sbjct: 245 GLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 304

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           RKLF+EM ++D ++++ II GY  DG +K A ++F E+Q      ++F  + +L+  ++ 
Sbjct: 305 RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 364

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
              + G  IH      +   + ++G +LVDMYAKCG+ + A  +F ++  +    W AMI
Sbjct: 365 LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMI 424

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                 G  ++ ++LF KM++  +  D+ TFA +L A A    +  G Q  +++ +  G 
Sbjct: 425 SAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIK-SGF 483

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
              V     ++D+  + G + +A +    MP + N   W A++ A  ++GE E
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAE 535



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
           +I+  G   D    N  +  +LK G++  A++LF+    KNT S N MISG+ + G   E
Sbjct: 42  RIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGE 101

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           ARKLF+ M ++  +TW+ +I GY++   +KEA E+F +MQR   +P       +L+ C  
Sbjct: 102 ARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNG 161

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
               +Q   +   + +       ++G  LVD Y K  RLD+A ++F++M   +  ++NAM
Sbjct: 162 HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAM 221

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           I G +  G  + A+ LF +MQ   ++P   TFA VL  CA+ G+ D
Sbjct: 222 ITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD 265


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/663 (33%), Positives = 343/663 (51%), Gaps = 56/663 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP--NVFVWN 102
           S +H  Q H+ ++ + +        TL+  +A  +  +    L +FN+   P  NV  W 
Sbjct: 112 SLKHATQIHSQLVTTNNHASLANINTLLLLYA--KCGSIHHTLLLFNTYPHPSTNVVTWT 169

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +++      N+P++ ++ ++ M      PN FT+  +  AC+      EG Q+HA + K+
Sbjct: 170 TLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKH 229

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK----------- 211
               D  V ++ + MYA  G +  A  + D+    +++ WN++I G++K           
Sbjct: 230 CFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVF 289

Query: 212 -------------------CG---DIEGAKELFKSTKDKNTGSY----NAMISGFARFGR 245
                              C    +++  K++  S   +         N+++  + + G 
Sbjct: 290 REVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGL 349

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           FE+A KLF    D+D +TW+ +I G  +   +++A   F  M R+ ++P +   S +  A
Sbjct: 350 FEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHA 409

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
            AS+ AL QG  IH HV +     ++ + ++LV MY KCG +  A++VF + K   V  W
Sbjct: 410 SASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCW 469

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            AMI     HG A++AI+LF +M  E + P+ ITF  VLSAC+H G ID G +    M  
Sbjct: 470 TAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMAN 529

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           ++ I P +EHY C+VDLLGR G L EA   I SMP EP++ VW ALLGAC KH  VE G 
Sbjct: 530 VHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGR 589

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
            + + L ++EP N                 ++  ++R+LM   G++   G S IDV    
Sbjct: 590 EVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRT 649

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
             F   D SH + +EIY ML+K+ E +K  GY    +Q   +  E  +E +   HSEKLA
Sbjct: 650 FVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVA-ETQFATNSVEGSEEQSLWCHSEKLA 708

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +AFG +   PG+ +R+ KNLR C DCH+  K  S++F+R+IIVRD  R+H F NG CSC 
Sbjct: 709 LAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCM 768

Query: 652 DFW 654
           D+W
Sbjct: 769 DYW 771


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/572 (34%), Positives = 322/572 (56%), Gaps = 47/572 (8%)

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
           +  +N+++   +        + +   MV    + ++FTYP+V +AC+     + G QVHA
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           +V++                              D     D    N+L+  Y KCG  + 
Sbjct: 311 YVLRRE----------------------------DFSFHFD----NSLVSLYYKCGKFDE 338

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
           A+ +F+    K+  S+NA++SG+   G   EA+ +F EM +K+ ++W  +I G  ++G+ 
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +E L++F+ M+R+  +P  +  S  + +CA LGA   G   H  + +         G AL
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNAL 458

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYAKCG ++ A +VF  M   +  +WNA+I  L  HG   +A++++ +M ++ +RPDR
Sbjct: 459 ITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDR 518

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           IT   VL+AC+HAG++D+G +    M+ +Y I P  +HY  ++DLL R+G  ++AE VI 
Sbjct: 519 ITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIE 578

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFG------------ERLGKILL--EMEPQNRRCDD 503
           S+P +P A +WEALL  CR HG +E G            E  G  +L   M     + ++
Sbjct: 579 SLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEE 638

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           VA++RKLM++RG+K     S I++   +H F   D SHP+ + +Y+ L+ + ++++  GY
Sbjct: 639 VARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGY 698

Query: 564 SPNSSQVLFDIDEE-EKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
            P++S VL D++ +  KE     HSEK+A+AFG +   PG TIR+ KNLR C DCH+  +
Sbjct: 699 VPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFR 758

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +S V +RDII+RDR R+HHFRNG+CSC +FW
Sbjct: 759 FLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 185/425 (43%), Gaps = 81/425 (19%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD-KEGVQV 155
           +  ++N+++     +N+ +  I+L+ +M     KP+ FT+ +V    ++   D K+ VQ 
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171

Query: 156 HAHVVKNGLCGDVHVKSSGIQMY----ACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           HA  +K+G      V ++ + +Y    +    ++ AR++ D+  + D   W  ++ GY+K
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 212 CGDIEGAKELFKSTKDK-NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
            G  +  +EL +   D     +YNAMISG+   G ++E                      
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE---------------------- 269

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN---SI 327
                    ALE+   M    I+  +F    V+ ACA+ G L  G  +H +V R    S 
Sbjct: 270 ---------ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF 320

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA-------------------- 367
             D     +LV +Y KCG+ D A  +FE M  K++ +WNA                    
Sbjct: 321 HFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 368 -----------MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
                      MI GLA +G  ++ ++LF  M+RE   P    F+  + +CA  G    G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 417 LQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            Q   Y  Q+   G D  +     ++ +  + G + EA +V  +MP   ++  W AL+ A
Sbjct: 437 QQ---YHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAA 492

Query: 475 CRKHG 479
             +HG
Sbjct: 493 LGQHG 497



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 147/367 (40%), Gaps = 75/367 (20%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH +++  G     H+ +  I +Y     +N ARQ+ D+ S+ D I    ++ GY   GD
Sbjct: 36  VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 215 IEGAKELFKSTKD--KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
           I  A+ +F+      ++T  YNAMI+GF+                             + 
Sbjct: 96  ITLARGVFEKAPVCMRDTVMYNAMITGFS-----------------------------HN 126

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD--QGIWIHDHVKRNSICVD 330
            DGY   A+ +F +M+ +  KP  F  + VLA  A L A D  Q +  H    ++     
Sbjct: 127 NDGY--SAINLFCKMKHEGFKPDNFTFASVLAGLA-LVADDEKQCVQFHAAALKSGAGYI 183

Query: 331 AVLGTALVDMYAKCGR----LDMAWKVFEDMKMKEVFTW--------------------- 365
             +  ALV +Y+KC      L  A KVF+++  K+  +W                     
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243

Query: 366 -----------NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
                      NAMI G    G   +A+E+  +M    +  D  T+  V+ ACA AG++ 
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G Q   Y+ +    D        +V L  + G   EA  +   MP + +   W ALL  
Sbjct: 304 LGKQVHAYVLRRE--DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSG 360

Query: 475 CRKHGEV 481
               G +
Sbjct: 361 YVSSGHI 367


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 312/557 (56%), Gaps = 68/557 (12%)

Query: 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
           P   + L+  ++   + P+   Y      C+     +   Q+H+H  K G          
Sbjct: 59  PQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRG---------- 108

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY 233
                                +    +C N LI  Y  CG +  A+++F    + +  ++
Sbjct: 109 --------------------AASHRRVC-NGLIHAYAVCGSLLDARKVFDRGHEGDAVAW 147

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N+++ G+A  G     R+ F  M  +D ++W+ II    ++G Y+EA+ VF EM      
Sbjct: 148 NSLLRGYAAAGDVNALREFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFREM------ 201

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                        AS+  L   + +        I V+  L +AL++MY+KC  ++ A  V
Sbjct: 202 ------------LASMECLPDRVTL---FPGKGIEVEERLSSALINMYSKCACIEGAVHV 246

Query: 354 FEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           FE++  +  V TWNAM+ G   +G ++ A+ELF +M+   + P++ITF  VL+AC+H G 
Sbjct: 247 FENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGF 306

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           ++ G+     M ++YGI+P++ HYGC+VDL  RAG   +AE++I  MPM+P+AAVW+AL+
Sbjct: 307 VEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALV 366

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
           GAC+ H   E G + G +L+E  P +                   V K+RKLM +RG++ 
Sbjct: 367 GACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQK 426

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PGSS I+++GVIHEF +GD SH   ++IY ML ++ ++LK+ GY P++S VL DID+E+
Sbjct: 427 VPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDED 486

Query: 579 -KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDR 637
            KE++   HSEKLAIAFG I+T PG  IR+ KNLRVC DCH+A KL+SK++ R IIVRD 
Sbjct: 487 VKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDA 546

Query: 638 VRYHHFRNGKCSCNDFW 654
            R+HHFR G CSC DFW
Sbjct: 547 NRFHHFREGSCSCGDFW 563



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 136/329 (41%), Gaps = 59/329 (17%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H+   K G      V   L+  HA +   +   A KVF+  H+ +   WNS+LR    
Sbjct: 99  QLHSHAAKRGAASHRRVCNGLI--HAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRG--- 153

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +     V +L    VG+ ++ +  ++ T+   C      +E + V               
Sbjct: 154 YAAAGDVNALREFFVGMQAR-DTVSWNTIIAWCVENGEYEEAIAVFR------------- 199

Query: 171 KSSGIQMYACFGCV-NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
                +M A   C+ ++       G + +    +ALI+ Y KC  IEGA  +F++   + 
Sbjct: 200 -----EMLASMECLPDRVTLFPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQM 254

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           N  ++NAM++GF                               T +G  ++ALE+F  M+
Sbjct: 255 NVDTWNAMLAGF-------------------------------TANGCSEKALELFARME 283

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRL 347
              + P K   + VL AC+  G +++G+   + + K   I  D      +VD++ + G  
Sbjct: 284 ITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLF 343

Query: 348 DMAWKVFEDMKMK-EVFTWNAMIGGLAMH 375
           D A K+ + M MK +   W A++G    H
Sbjct: 344 DKAEKMIQMMPMKPDAAVWKALVGACKTH 372


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 335/661 (50%), Gaps = 105/661 (15%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN--------------------------- 77
           +W   KQ H   L+SG F+D +V   +V  +A                            
Sbjct: 265 AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVT 324

Query: 78  --SRFSNFELALKVFNSVHKP----NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
             S+   F+ AL +F  + +     NV  W++V+    +    +  + ++ +M+   S+P
Sbjct: 325 GYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEP 384

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N  T  ++   C+       G + H H +K  L  D                        
Sbjct: 385 NVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLD------------------------ 420

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
           ++    D++  NALID Y KC   + A+ +F     K                       
Sbjct: 421 ENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK----------------------- 457

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDK-IKPRKFVLSCVLAACASL 309
                 D+  +TW+ +I G  + G   EALE+F++M Q D  + P  F +SC L ACA L
Sbjct: 458 ------DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARL 511

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTA--LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           GAL  G  IH +V RN     A+L  A  L+DMY+K G +D A  VF++M  +   +W +
Sbjct: 512 GALRFGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTS 570

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           ++ G  MHGR ++A+++F++MQ+  + PD +TF  VL AC+H+GM+D+G+     M + +
Sbjct: 571 LMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDF 630

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           G+ P  EHY C+VDLL RAG L EA E+I  MPM+P  AVW ALL ACR +  VE GE  
Sbjct: 631 GVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYA 690

Query: 488 GKILLEMEP-------------QNRRC-DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              LLE+E               N RC  DVA++R LMK  GIK  PG S +        
Sbjct: 691 ANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTAT 750

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD SHP  ++IY +L+ +++++K  GY P++   L D+D+EEK      HSEKLA+A
Sbjct: 751 FFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALA 810

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           +G + T PGA IR+ KNLR C DCHSA   IS + + +IIVRD  R+HHF+NG CSC  +
Sbjct: 811 YGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGY 870

Query: 654 W 654
           W
Sbjct: 871 W 871



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 233/489 (47%), Gaps = 62/489 (12%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           T  F  K   +I + +C  S       HAV+  SG   + +V   LV  +   R   +E 
Sbjct: 147 TFPFVLKACGEIPSFRCGAS------VHAVVFASGFEWNVFVGNGLVSMYG--RCGAWEN 198

Query: 86  ALKVFNSVHKPNV---FVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFK 141
           A +VF+ + +  V     WNS++ A ++  +  R + ++  M   +  +P+  +   V  
Sbjct: 199 ARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLP 258

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+   A   G QVH + +++GL  DV V                               
Sbjct: 259 ACASVGAWSRGKQVHGYALRSGLFEDVFVG------------------------------ 288

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK-- 259
            NA++D Y KCG +E A ++F+  K K+  S+NAM++G+++ GRF++A  LF ++ ++  
Sbjct: 289 -NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 347

Query: 260 --DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
             + +TWSA+I GY + G   EAL+VF +M     +P    L  +L+ CAS G L  G  
Sbjct: 348 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKE 407

Query: 318 IHDH-------VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAM 368
            H H       +  N    D ++  AL+DMY+KC     A  +F+ +  K+  V TW  +
Sbjct: 408 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467

Query: 369 IGGLAMHGRADDAIELFFKMQREK--MRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           IGG A HG A++A+ELF +M +    + P+  T +C L ACA  G +  G Q   Y+ + 
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
                 +    C++D+  ++G +  A  V  +M  + N   W +L+     HG    GE 
Sbjct: 528 RFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMHGR---GEE 583

Query: 487 LGKILLEME 495
             +I  EM+
Sbjct: 584 ALQIFYEMQ 592



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG--LQA 419
           VF WN +I      G  +D ++L+ +MQR   RPD  TF  VL AC        G  + A
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           + +     G +  V     +V + GR G    A +V   M
Sbjct: 170 VVFAS---GFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/650 (32%), Positives = 343/650 (52%), Gaps = 57/650 (8%)

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
           G  ++ ++   L+  +  ++   F+ AL VF+ +   NVF W  +L A  E+ +  R   
Sbjct: 5   GWIRNRFLCNLLIDLY--TKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179
            +  M+     P +        AC+       G  +   ++  G+  +  V+++ + +Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 180 CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK---------------- 223
             G    A  +    S  DV+ W+A++  Y + G    A  LF+                
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 224 ------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDKD 260
                 S  D  +G+                   A+++ + + GR E A + F ++ +K+
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            + WSAI   Y ++   ++A+ V + M  + + P       VL ACA++ AL QG  IH+
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 321 --HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
             HV    +  D  + TALV+MY+KCG L +A  +F+ +   ++  WN++I   A HG+ 
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQT 362

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           + A+ELF +M+ E ++P  ITF  VL AC+HAGM+D+G +        +GI PE EH+GC
Sbjct: 363 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC 422

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           +VDLLGRAG++ ++E+++  MP EP+   W A LGACR +  ++      + L +++P+ 
Sbjct: 423 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRK 482

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
           R              R  DVA+MR+ M+        G S I+V   +HEF +GD  HP++
Sbjct: 483 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRI 542

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
            EI+  L+++ + +K  GY P++  VL D+ +E KET   YHSEKLA+AF  + T  G+ 
Sbjct: 543 GEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSP 602

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IRV+KNLRVC DCH+A+K ISK+  R+I+VRD  R+H F+NG CSC D+W
Sbjct: 603 IRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/664 (32%), Positives = 348/664 (52%), Gaps = 64/664 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEH 111
           H +++ S    D  VS  L+  +   +  +   A +VF  + +  NV  W+ +  A   H
Sbjct: 168 HQMVVDSRLEIDPKVSNALLNMY--KKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALH 225

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
              W  +  +  M+ +  K  K    T+  ACS     ++G  +H+ +  +G   ++ V 
Sbjct: 226 GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVA 285

Query: 172 SSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYL------------------- 210
           ++ + MY   G V +AR++ D  D +  DV+ WN ++  Y+                   
Sbjct: 286 NAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRA 345

Query: 211 ----------KCGDIEGA-------KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
                      C   E         K++     +KN    NA++S +A+ G   EAR +F
Sbjct: 346 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 405

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-------QRDKIKPRKFVLSCVLAAC 306
           ++M  +  I+W+ II  Y +     EA  +F +M          ++KP       +L AC
Sbjct: 406 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 465

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTW 365
           A + AL+QG  + +      +  D  +GTA+V++Y KCG ++   ++F+ +    +V  W
Sbjct: 466 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLW 525

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NAMI   A  G++ +A++LF++M+ E +RPD  +F  +L AC+H G+ D+G    T M  
Sbjct: 526 NAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 585

Query: 426 MY-GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            Y  +   ++H+GC+ DLLGR G L EAEE +  +P++P+A  W +LL ACR H +++  
Sbjct: 586 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 645

Query: 485 ERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           + +   LL +EP              + ++   VAK+RK M E+G+K   G S I++   
Sbjct: 646 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKY 705

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H+F TGD +HP+ +EI   L K+  ++K  GY P++  VL  +DE+EKE     HSE+L
Sbjct: 706 MHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERL 765

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIA G I+T  G  +RV KNLRVC DCH+ATKLISK+  R I+VRD  R+H F++GKCSC
Sbjct: 766 AIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSC 825

Query: 651 NDFW 654
            D+W
Sbjct: 826 QDYW 829



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/466 (21%), Positives = 210/466 (45%), Gaps = 56/466 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A   F+++ + N++ W  ++ A     +    +     M     +P+  T+ T   +C  
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNA 204
            E+ ++G+++H  VV + L  D  V ++ + MY   G ++ A+++     ++ +VI W+ 
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 205 LIDGYLKCGDIEGAKELF--------KSTK------------------------------ 226
           +   +   G++  A   F        K+TK                              
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSG 277

Query: 227 -DKNTGSYNAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEV 283
            +      NA+++ + R G  EEARK+F+ M++  +D ++W+ ++  Y  +   K+A+++
Sbjct: 278 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQL 337

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           +  MQ   ++  K     +L+AC+S   +  G  +H  +  + +  + ++G ALV MYAK
Sbjct: 338 YQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 394

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-------QREKMRPD 396
           CG    A  VF+ M+ + + +W  +I          +A  LF +M         ++++PD
Sbjct: 395 CGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPD 454

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            + F  +L+ACA    +++G + ++      G+  +      +V+L G+ G + E   + 
Sbjct: 455 ALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIF 513

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502
             +   P+  +W A++    + G+    E L K+   ME +  R D
Sbjct: 514 DGVCSRPDVQLWNAMIAVYAQFGQSH--EAL-KLFWRMEMEGVRPD 556



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 118/519 (22%), Positives = 223/519 (42%), Gaps = 92/519 (17%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVK-NGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
           TY  + + C+  +A  EG ++H+  VK N L G++ + +  + MYA       A+   D 
Sbjct: 45  TYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDA 104

Query: 194 GSKSDVICWNALIDGYL--------------------------------KCGDIEGAKE- 220
             + ++  W  L+  +                                  CGD E  ++ 
Sbjct: 105 LEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDG 164

Query: 221 ------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-NDKDEITWSAIIDGYTK 273
                 +  S  + +    NA+++ + + G    A+++F +M   ++ I+WS +   +  
Sbjct: 165 IRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHAL 224

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            G   EAL  F  M    IK  K  +  +L+AC+S   +  G  IH  +  +    + ++
Sbjct: 225 HGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLV 284

Query: 334 GTALVDMYAKCGRLDMAWKVFEDM--KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
             A++ MY +CG ++ A KVF+ M   +++V +WN M+     + R  DAI+L+ +MQ  
Sbjct: 285 ANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ-- 342

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG-IDPEVEHYGCIVDLLGRAGYLA 450
            +R D++T+  +LSAC+ A   D GL  + + Q +   ++  V     +V +  + G   
Sbjct: 343 -LRADKVTYVSLLSACSSAE--DVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHT 399

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR---------- 500
           EA  V   M  + +   W  ++ A  +   V     L + +LE+E               
Sbjct: 400 EARAVFDKME-QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAF 458

Query: 501 ------CDDVAKMR--KLMKER----GIKTNP--GSSMIDVNGVIHEFRTG----DG--S 540
                 C DV+ +   K++ E+    G+ ++   G++++++ G   E   G    DG  S
Sbjct: 459 VTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCS 518

Query: 541 HPQVKEIYLMLK------------KIIEKLKMEGYSPNS 567
            P V+    M+             K+  +++MEG  P+S
Sbjct: 519 RPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDS 557



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 12/202 (5%)

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD-HVKRNSICVDAVLGTALVDMYAKC 344
           ++++  ++      + +L  CA   AL +G  IH   VK N +  + +LG  +V MYA C
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
                A   F+ ++ + +++W  ++   A+ G++ + +    +M+++ +RPD +TF   L
Sbjct: 93  DSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 152

Query: 405 SACAHAGMIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
            +C     +  G++    + QM       IDP+V +   ++++  + G L+ A+ V + M
Sbjct: 153 GSCGDPESLRDGIR----IHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAKM 206

Query: 460 PMEPNAAVWEALLGACRKHGEV 481
               N   W  + GA   HG V
Sbjct: 207 ERTRNVISWSIMAGAHALHGNV 228


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/636 (32%), Positives = 339/636 (53%), Gaps = 77/636 (12%)

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P+   W  +++    H      ++ ++ +      P++  +P++ +A ++ +       +
Sbjct: 39  PHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSL 98

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGC----------------------VNKARQILDD 193
           HA V++ G   D++  ++ + MY+ F                        ++  R++ D 
Sbjct: 99  HAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDR 158

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS--------------------------TKD 227
               DV+ WN +I G  + G  E A  + K                           TK 
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG 218

Query: 228 KNTGSY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           K    Y             +++I  +A+  + E +   F+ ++++D I+W++II G  ++
Sbjct: 219 KEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQN 278

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G + + L  F  M ++K+KP +   S V+ ACA L AL+ G  +H ++ R     +  + 
Sbjct: 279 GRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA 338

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           ++L+DMYAKCG + MA  +F  ++M  +++ +W A+I G AMHG A DA+ LF +M  + 
Sbjct: 339 SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDG 398

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           ++P  + F  VL+AC+HAG++D G +    MQ+ +G+ P +EHY  + DLLGRAG L EA
Sbjct: 399 VKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEA 458

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------------- 498
            + IS+M  EP  +VW  LL ACR H  +E  E++   +L ++P N              
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAA 518

Query: 499 RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
           +R  D AK+R  M++ G+K  P  S I+V   +H F  GD SHP   +I   L  ++E++
Sbjct: 519 QRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQM 578

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           + EGY  ++++VL D+DEE K    + HSE+LAIAFG I+T  G TIRVIKN+RVC DCH
Sbjct: 579 EKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCH 638

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +A K ++K+  R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 639 TAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 171/410 (41%), Gaps = 70/410 (17%)

Query: 41  KCHTSWQHLKQA---HAVILKSGHFQDHYVSGTLVKCHA-------------------NS 78
           +  T ++H   A   HA +++ G   D Y +  L+  ++                   N+
Sbjct: 84  RASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNN 143

Query: 79  RFS-NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           ++S   +   K+F+ +   +V  WN+V+    ++      +++  EM   + +P+ FT  
Sbjct: 144 KYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLS 203

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           ++    +      +G ++H + +++G   DV + SS I MYA    V  +       S  
Sbjct: 204 SILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR 263

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTK------------------------------- 226
           D I WN++I G ++ G  +     F+                                  
Sbjct: 264 DAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLH 323

Query: 227 --------DKNTGSYNAMISGFARFGRFEEARKLFN--EMNDKDEITWSAIIDGYTKDGY 276
                   D N    ++++  +A+ G  + AR +FN  EM D+D ++W+AII G    G+
Sbjct: 324 AYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGT 335
             +A+ +F EM  D +KP       VL AC+  G +D+G    + ++R+  +        
Sbjct: 384 ALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYA 443

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMHGRADDAIEL 384
           A+ D+  + GRL+ A+    +M  +   + W+ ++       RA   IEL
Sbjct: 444 AVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAAC----RAHKNIEL 489



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 18/301 (5%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+   N+    F+  +IL I     H +    K+ H   ++ G  +D ++  +L+  +A
Sbjct: 188 KEMGKENLRPDSFTLSSILPIFTE--HANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYA 245

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
             + +  EL++  F+ +   +   WNS++  C+++    + +  +  M+    KP + ++
Sbjct: 246 --KCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSF 303

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD--DG 194
            +V  AC+   A   G Q+HA++++ G   +  + SS + MYA  G +  AR I +  + 
Sbjct: 304 SSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM 363

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEAR 250
              D++ W A+I G    G    A  LF+            ++ A+++  +  G  +E  
Sbjct: 364 CDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGW 423

Query: 251 KLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           K FN M     +      ++A+ D   + G  +EA +  + M  +   P   V S +LAA
Sbjct: 424 KYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEE---PTGSVWSTLLAA 480

Query: 306 C 306
           C
Sbjct: 481 C 481


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 309/542 (57%), Gaps = 46/542 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHA-NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
           HA ++K G   + +V+ +LV  +A     +     L  + +       VWN+++      
Sbjct: 42  HAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRS 101

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
            +       + +MV     P   TY TV  AC   +    G+QVH  VV +G+  D+ V 
Sbjct: 102 RQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVG 161

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
                                          NALID Y +C +++ A ELF+  + +NT 
Sbjct: 162 -------------------------------NALIDMYAECSEMDAAWELFEGMEVRNTV 190

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S+ ++ISGF R G+ ++AR LF+ M ++D ++W+A+IDGY + G ++EALE+F EMQ  K
Sbjct: 191 SWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSK 250

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           ++  +F +  V+ ACA LGAL+ G W   ++ R+ I +D  +G ALVDMY+KCG +  A 
Sbjct: 251 VRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQAL 310

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VF++M +++ FTW A+I GLA++G  ++AI +F++M R    PD +TF  VL+AC HAG
Sbjct: 311 GVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAG 370

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
           ++D+G      M   YGI P V H+GC++DLLGRAG L EA E I +MPM PN+A+W  L
Sbjct: 371 LVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTL 430

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIK 517
           L ACR HG  E G+   + LLE++ +N               R +DV ++R+++ E+GIK
Sbjct: 431 LAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIK 490

Query: 518 TNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEE 577
             PG S+I++NG IHEF  GD SHP  KEIY  L K++  LK  GY P+ +++   +  E
Sbjct: 491 KEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLTEIFVQVTRE 550

Query: 578 EK 579
           EK
Sbjct: 551 EK 552



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 10/208 (4%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVL---AACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           L V+  M     +P  +    +L    A A  GA+  G  +H HV +  + ++A + ++L
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAV--GDAVHAHVVKFGMELNAHVASSL 60

Query: 338 VDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           V MYA  G   +A  + +    +       WNA+I G     +   +   F  M R  + 
Sbjct: 61  VLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVV 120

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P  +T+  VLSAC     I  G+Q    +    G+ P+++    ++D+      +  A E
Sbjct: 121 PTPVTYITVLSACGKDKYIWLGMQVHKCVVA-SGVLPDLKVGNALIDMYAECSEMDAAWE 179

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVE 482
           +   M +  N   W +++    + G+V+
Sbjct: 180 LFEGMEVR-NTVSWTSVISGFLRLGQVD 206


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/673 (34%), Positives = 351/673 (52%), Gaps = 63/673 (9%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           H+S    +  HA + + G   D  V+  LV  +   R  + + ++ VF ++   N   WN
Sbjct: 246 HSSLPLARSIHARVEELGFLGDVVVATALVTMYG--RCGSVDESIAVFEAMAVRNHVSWN 303

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEAD-KEGVQVHAHVV 160
           +++ A  +        ++Y  M     +PNK T+ T  KA CS +  D  E   +H  + 
Sbjct: 304 AMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIA 363

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
             GL GDV V ++ + MY   G +++AR   D     +++ WNA++  Y   G    A E
Sbjct: 364 CAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAME 423

Query: 221 LFKSTKDK----NTGSY---------------------------------NAMISGFARF 243
           LF + K +    N  SY                                 N ++  FAR 
Sbjct: 424 LFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARS 483

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  EEA   F+    KD ++W+  +   +       A+  F  MQ +  +P KF L  V+
Sbjct: 484 GSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVV 543

Query: 304 AACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGR-LDMAWKVFEDMK--M 359
             CA LG L+ G  I   +     +  D V+ +A+++M AKCG  +D   ++F  M    
Sbjct: 544 DVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDR 603

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K++  WN MI   A HG    A++LF  MQ R  +RPD  TF  VLS C+HAG+++ G+ 
Sbjct: 604 KDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIH 663

Query: 419 ALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                +++ GI+ + VEHY C+VD+LGR GYL EAE+ I  MP+  ++ VW +LLGAC  
Sbjct: 664 CFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSS 723

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN-PGS 522
           +G++E GER  +  +E+   +               R +D  ++R+ M ER +K   PG 
Sbjct: 724 YGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGK 783

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I V   +HEF   D SHPQ  EIY  L+++   ++  GY P++  VL D++EE+KE  
Sbjct: 784 SSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQL 843

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
             YHSEKLAIAFG I+     +IRVIKNLRVC+DCH+ATK I++V +R+I VRD  R+HH
Sbjct: 844 LWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHH 903

Query: 643 F-RNGKCSCNDFW 654
           F ++G+CSC D+W
Sbjct: 904 FGKDGECSCGDYW 916



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 211/474 (44%), Gaps = 50/474 (10%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLY 121
           +D +V+  L+   A  +    E AL+VF+ +  P++  WN+ + AC  ++E P R + L 
Sbjct: 164 RDLFVATALLD--AYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLV 221

Query: 122 SEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
             M      PN+ ++  +  +C    +      +HA V + G  GDV V ++ + MY   
Sbjct: 222 RRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRC 281

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA--------KELFK---------- 223
           G V+++  + +  +  + + WNA+I  + +CG    A        +E F+          
Sbjct: 282 GSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTAL 341

Query: 224 ----STKDKNTGSY-------------------NAMISGFARFGRFEEARKLFNEMNDKD 260
               S+  ++ G                      A+++ +   G  + AR  F+ +  K+
Sbjct: 342 KAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 401

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++W+A++  Y  +G  +EA+E+F  M+R  + P K     VL  C     + +   IH 
Sbjct: 402 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHA 458

Query: 321 HVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            V  N +   ++ +   +V M+A+ G L+ A   F+   +K+  +WN  +  L+      
Sbjct: 459 EVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLH 518

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            AI  F+ MQ E  RPD+ T   V+  CA  G ++ G      +     ++ +V     +
Sbjct: 519 GAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAV 578

Query: 440 VDLLGRAG-YLAEAEEVISSMPME-PNAAVWEALLGACRKHGEVEFGERLGKIL 491
           ++++ + G  + E E + + MP +  +   W  ++ A  +HG      +L +I+
Sbjct: 579 MNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIM 632



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 203/507 (40%), Gaps = 85/507 (16%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  I+K G  ++  +   LV+ ++  R  + + A   F+++    +  WN+++ A  
Sbjct: 44  RQLHRQIVKQGLARNDLLGNYLVQMYSKCR--SLDDANAAFSALRSRGIATWNTLIAA-- 99

Query: 110 EHNEPWRVISLYSEMV---GVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGLC 165
             + P  V  LY+ M      +++PN+ T   V  A  S   +     +  A +V + + 
Sbjct: 100 -QSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSSSSSRAQARIVHDDIR 158

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           G                             + D+    AL+D Y KCG +E A E+    
Sbjct: 159 GS--------------------------DLERDLFVATALLDAYGKCGCVESALEV---- 188

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW-SAIIDGYTKDGYYKEALEVF 284
                                      F+ +   D I W +AI+     D     AL + 
Sbjct: 189 ---------------------------FSRIQVPDLICWNAAIMACAGNDERPDRALLLV 221

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M  + + P +     +L++C    +L     IH  V+      D V+ TALV MY +C
Sbjct: 222 RRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRC 281

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D +  VFE M ++   +WNAMI   A  G    A  ++++MQ+E  RP++ITF   L
Sbjct: 282 GSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTAL 341

Query: 405 SACAHAGMIDRG-LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
            A   +   D G   AL       G++ +V     +V + G  G +  A     ++P + 
Sbjct: 342 KAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAK- 400

Query: 464 NAAVWEALLGACRKHGEV-EFGERLGKILLEMEPQNRR--------CDDVAKMRKLMKE- 513
           N   W A+L A   +G   E  E    +  +    N+         C+DV++ R +  E 
Sbjct: 401 NIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEV 460

Query: 514 --RGIKTNPGSSMIDVNGVIHEF-RTG 537
              G+     S     NGV+  F R+G
Sbjct: 461 VGNGLFAQESSI---ANGVVRMFARSG 484



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 12/190 (6%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L+ +L  C     L QG  +H  + +  +  + +LG  LV MY+KC  LD A   F  ++
Sbjct: 27  LAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALR 86

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHA---GM 412
            + + TWN +I   A         +L+ +M   +R + RP+R+T   VL A A       
Sbjct: 87  SRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSS 143

Query: 413 IDRGLQALTYMQQMYGIDPEVEHY--GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
                QA      + G D E + +    ++D  G+ G +  A EV S + + P+   W A
Sbjct: 144 SSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQV-PDLICWNA 202

Query: 471 LLGACRKHGE 480
            + AC  + E
Sbjct: 203 AIMACAGNDE 212


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 352/663 (53%), Gaps = 60/663 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  HA     G   D +VS  L+  +   R + F  A  VF  +   +V  WN++L    
Sbjct: 119 RTIHAHAAAVGLHTDLFVSTALIDLYI--RCARFGPAANVFAKMPMRDVVAWNAMLAGYA 176

Query: 110 EHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD- 167
            H      I+   +M      +PN  T  ++    +   A  +G  VHA+ ++  L  + 
Sbjct: 177 NHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNE 236

Query: 168 --VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
             V + ++ + MYA    +  A ++    +  + + W+ALI G++ C  +  A  LFK  
Sbjct: 237 EQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDM 296

Query: 224 ---------------------STKDKNTGSY-----------------NAMISGFARFGR 245
                                S  D   G+                  N+++S +A+ G 
Sbjct: 297 LVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGL 356

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
             EA  LF+E+  KD I++ A++ GY ++G  +EA  VF +MQ   ++P    +  ++ A
Sbjct: 357 INEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPA 416

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C+ L AL  G   H  V    + ++  +  +L+DMYAKCGR+D++ +VF+ M  +++ +W
Sbjct: 417 CSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSW 476

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           N MI G  +HG   +A  LF  M+ +   PD +TF C+++AC+H+G++  G      M  
Sbjct: 477 NTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTH 536

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            YGI P +EHY C+VDLL R G+L EA + I SMP++ +  VW ALLGACR H  ++ G+
Sbjct: 537 KYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGK 596

Query: 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           ++ +++ ++ P+                R D+ A++R + K +G K +PG S I++NG +
Sbjct: 597 QVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSL 656

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  GD SHP   +IY  L  I+  +K  GY  ++S VL D++EEEKE A  YHSEKLA
Sbjct: 657 HAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLA 716

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           IAFG ++ +   TI V KNLRVC DCH+A K ++ V  R IIVRD  R+HHF+NG+CSC 
Sbjct: 717 IAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCG 776

Query: 652 DFW 654
           DFW
Sbjct: 777 DFW 779



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 204/467 (43%), Gaps = 49/467 (10%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
              LA +VF+ +  P+   +N+++RA          I LY  M+     PNK+T+P V K
Sbjct: 48  QLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLK 107

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS       G  +HAH    GL  D+ V ++ I +Y        A  +       DV+ 
Sbjct: 108 ACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVA 167

Query: 202 WNALIDGYLKCG-------------DIEGAKE-----------------LFKSTK----- 226
           WNA++ GY   G             D  G +                  LF+ T      
Sbjct: 168 WNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYC 227

Query: 227 -----DKNTGSY---NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                D+N        A++  +A+      A ++F+ M  ++E+TWSA+I G+       
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMT 287

Query: 279 EALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           EA  +F +M  + +       ++  L  CASL  L  G  +H  + ++ I  D   G +L
Sbjct: 288 EAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSL 347

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYAK G ++ A  +F+++ +K+  ++ A++ G   +G+A++A  +F KMQ   ++PD 
Sbjct: 348 LSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDI 407

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            T   ++ AC+H   +  G  +   +  + G+  E      ++D+  + G +  + +V  
Sbjct: 408 ATMVSLIPACSHLAALQHGRCSHGSV-IIRGLALETSICNSLIDMYAKCGRIDLSRQVFD 466

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            MP   +   W  ++     HG    G+    + L M+ Q    DDV
Sbjct: 467 KMPAR-DIVSWNTMIAGYGIHG---LGKEATTLFLSMKNQGFEPDDV 509



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+   AR++F+ +   D   ++A+I  Y+  G +  A++++  M   ++ P K+    VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC++L  L  G  IH H     +  D  + TAL+D+Y +C R   A  VF  M M++V 
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            WNAM+ G A HG    AI     MQ R  +RP+  T   +L   A  G + +G     Y
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 423 MQQMYGIDPEVEHY---GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             + Y +D   E       ++D+  +  +L  A  V   M +  N   W AL+G 
Sbjct: 227 CLRAY-LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIGG 279


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 350/627 (55%), Gaps = 48/627 (7%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            K  H  IL++G   D  ++ +++  +   R   F  A K+F  + + +   WN ++ + L
Sbjct: 408  KGIHGWILRNGLDLDAVLNNSILDYYVKCR--CFGYAEKLFGLMAEKDTVSWNIMMSSYL 465

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +  +  + + L+ ++ G D+     ++ T+         ++  +++   +V  G   +  
Sbjct: 466  QIGDMQKSVDLFRQLPGKDAA----SWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKL 521

Query: 170  VKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
              S  + + +    +   +QI    L  G   D    N+LID Y KCG++E A  +FK  
Sbjct: 522  TFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHL 581

Query: 226  KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD----EITWSAIIDGYTKDGYYKEAL 281
                                 +E+  + +E +  D     ++WS+++ GY ++G +++AL
Sbjct: 582  P--------------------QESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDAL 621

Query: 282  EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            + F+ M   +++  KF L+ V++ACAS G L+ G  +H ++++    +D  LG++++DMY
Sbjct: 622  KTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMY 681

Query: 342  AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
             KCG L+ AW +F   K + V  W +MI G A+HG+  +A+ LF  M  E + P+ ++F 
Sbjct: 682  VKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFV 741

Query: 402  CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
             VL+AC+HAG+++ G +    M+++YGI P  EH+ C+VDL GRAG L E +E I +  +
Sbjct: 742  GVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAI 801

Query: 462  EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKM 507
               ++VW + L +CR H  +E G  + K LLE+EP                 R ++ AK+
Sbjct: 802  SKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKI 861

Query: 508  RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
            R LM++RG+K NP  S I +   +H F  GD SHPQ  +IY  L ++I +LK  GYS + 
Sbjct: 862  RSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDV 921

Query: 568  SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
            + V+ D+++E+++    YHSEKLAIA+G I+T PG  IRV+KNLRVC DCH+  K  S++
Sbjct: 922  TPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASEL 981

Query: 628  FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              R+II+RD  R+HHF++G CSC D+W
Sbjct: 982  LGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 209/439 (47%), Gaps = 53/439 (12%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L+  +A S+  N E A K+F  + + +VF W  ++           V+ L+++M      
Sbjct: 327 LLNLYAKSQ--NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 131 PNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           PN+FT   V K+CS    D   G  +H  +++NGL                         
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGL------------------------- 419

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                   D +  N+++D Y+KC     A++LF    +K+T S+N M+S + + G  +++
Sbjct: 420 ------DLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKS 473

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             LF ++  KD  +W+ +IDG  ++G  + ALE+  +M        K   S  L   +SL
Sbjct: 474 VDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSL 533

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-------------- 355
             L  G  IH  V +  +  D  +  +L+DMY KCG ++ A  +F+              
Sbjct: 534 SVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEES 593

Query: 356 -DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
            D  + E  +W++M+ G   +GR +DA++ F  M   ++  D+ T   V+SACA AG+++
Sbjct: 594 CDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLE 653

Query: 415 RGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
            G Q   Y+Q++ +G+D  V     I+D+  + G L +A  +I +   + N  +W +++ 
Sbjct: 654 LGRQVHGYIQKIGHGLD--VFLGSSIIDMYVKCGSLNDA-WLIFNQAKDRNVVLWTSMIS 710

Query: 474 ACRKHGEVEFGERLGKILL 492
            C  HG+     RL ++++
Sbjct: 711 GCALHGQGREAVRLFELMI 729



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  + +N  CV  + G  L+++YAK   L+ A K+FE++   +VF+W  +I G A  G 
Sbjct: 310 LHAKLIKNG-CV-GIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACA---HAGMIDRGLQALTYMQQMYGIDPEVE 434
           + D + LF KMQ + + P++ T + VL +C+   +   I +G+          G+D +  
Sbjct: 368 SADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRN---GLDLDAV 424

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
               I+D   +      AE++   M  E +   W  ++ +  + G+++
Sbjct: 425 LNNSILDYYVKCRCFGYAEKLFGLMA-EKDTVSWNIMMSSYLQIGDMQ 471


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 323/574 (56%), Gaps = 55/574 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y ++   C    A +EG +VH H++K      V++++  I +Y    C+  AR + D+  
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISG------------ 239
           + +V+ W A+I  Y + G    A  LF    +S  + N  ++  +++             
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 240 -----------------------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                                  +A+ GR  +A  +F+ + ++D +  +AII GY + G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL++F ++Q + +       + VL A + L AL+ G  +H HV R+      VL  +
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRP 395
           L+DMY+KCG +  A ++F+ M  +   +WNAM+ G + HG A + +ELF  M+ E K++P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D IT+  VLS C+H  + D GL+    M     GI+P++ HYGC+VDLLGRAG + EA +
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
            I  MP  P AA+W +LLG+CR H +VE G  +G+ LLE+EP+N               +
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +D+  +R LM+E+ +   PG S ++++ ++H F   D +HP+ +E+   +K++  K K 
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKE 544

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           +GY P+ S VL+D+DEE+KE     HSEKLA+AFG I T  G TIRVIKNLR+C DCHS 
Sbjct: 545 DGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSF 604

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K +S+++ R +I+RD+ R+H+   G CSC D+W
Sbjct: 605 AKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 168/363 (46%), Gaps = 45/363 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A  +F+ + + NV  W +++ A  +    +  ++L+ EM+  D++PN FT+ T+  +C  
Sbjct: 116 ARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYG 175

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           +   + G Q+H+  +K      + V SS + MYA  G +  A  +     + DV+   A+
Sbjct: 176 SLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAI 235

Query: 206 IDGYLKCGDIEGAKELFKSTK----DKNTGSY---------------------------- 233
           I GY + G  E A +LF+  +    + N+ +Y                            
Sbjct: 236 ISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQ 295

Query: 234 -------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  N++I  +++ G    AR++F+ M ++  I+W+A++ GY+K G  +E LE+F  
Sbjct: 296 YSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKL 355

Query: 287 M-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAK 343
           M + +K+KP       VL+ C+     D G+ I  ++      ++  +G    +VD+  +
Sbjct: 356 MREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGR 415

Query: 344 CGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
            GR++ A+   + M  +     W +++G   +H  +D  I +    +  ++ P+      
Sbjct: 416 AGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH--SDVEIGIIVGQKLLELEPENAGNYV 473

Query: 403 VLS 405
           +LS
Sbjct: 474 ILS 476



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            +  H KQ H+ +L+SG +    +  +L+  +  S+  N   A ++F+S+ +     WN+
Sbjct: 278 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMY--SKCGNVCYARRIFDSMPERTCISWNA 335

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVV-- 160
           +L    +H     V+ L+  M   +  KP+  TY  V   CS  + +  G+++  ++V  
Sbjct: 336 MLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNG 395

Query: 161 KNGLCGDVHVKSSGIQMYAC----FGCVNKARQILDDGSKSDVI----CWNALIDGY--- 209
           K+G+  D       I  Y C     G   +  +  D   K   +     W +L+      
Sbjct: 396 KDGIEPD-------IGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVH 448

Query: 210 --LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
             ++ G I G K L    + +N G+Y  + + +A  G++E+ R + + M +K
Sbjct: 449 SDVEIGIIVGQKLL--ELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 498


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/658 (32%), Positives = 353/658 (53%), Gaps = 56/658 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + H + +K G  +D  V+ +LV  +  S+      A  +F+  ++ N   WN+++     
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMY--SKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCT 212

Query: 111 HNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
               +   +L+ EM +  D + N+ T   +  AC      +   ++H + +++G   D  
Sbjct: 213 KGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDEL 272

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V +  +  YA  G +  A ++        V  WNALI G  + GD   A  L+       
Sbjct: 273 VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSG 332

Query: 223 ------------KSTKDKNTGSYNAMISGFA--------------------RFGRFEEAR 250
                        ++    +  Y   + GF                       G    AR
Sbjct: 333 LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSAR 392

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            LF+ M +K  ++W+A+I GY+++G  ++AL +F ++  D  +P    +  VL AC+   
Sbjct: 393 LLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQS 452

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G   H +  +  +  D  +  + +DMYAK G +  +  VF+ +K K++ +WNA+I 
Sbjct: 453 ALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIA 512

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
              +HG  +++IELF +M++    PD  TF  +L+ C+HAG+++ GL+    MQ  +GI+
Sbjct: 513 AYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIE 572

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P++EHY C++D+LGRAG L +A  ++  MP +P++ VW +LL  CR  GE+E G+ + + 
Sbjct: 573 PKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEK 632

Query: 491 LLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           LLE+EP+N               R DDV ++R+++K+ G++ + G S I++ G +H F  
Sbjct: 633 LLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVA 692

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD   PQ KE+ +  +K+ +K+   GY PN+S VL D+DEE+K    + HSEKLAI FG 
Sbjct: 693 GDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGL 752

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +NT  G T+R+ KNLR+C DCH+A+K +S+V  R+II+RD  R+HHF++G CSC D+W
Sbjct: 753 LNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 221/485 (45%), Gaps = 52/485 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H +++K G   D +V   L+  +   +F   + A+KVF+ +   N+  WNS++    E+ 
Sbjct: 54  HGMVIKMGLLLDVFVGNALIAMYG--KFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENG 111

Query: 113 EPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
                  +  EM+  +    P+  T  TV   C+     + G+++H   VK GL  DV V
Sbjct: 112 FSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRV 171

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF-------- 222
            +S + MY+  G + +A+ + D  ++ + + WN +I G    G I  A  LF        
Sbjct: 172 NNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQED 231

Query: 223 ---------------------KSTKDKNTGSY-----------NAMISGFARFGRFEEAR 250
                                +S K+ +  S            N  ++ +A+ G    A 
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAE 291

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F  M  K   +W+A+I G  ++G  ++AL ++ +M    + P  F +  +L A A L 
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +L  G  +H  V R+ + +D+ +G +L+ +Y  CG    A  +F+ M+ K   +WNAMI 
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMIS 411

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G + +G  +DA+ LF K+  +  +P  I    VL AC+    +  G +  T+   +  + 
Sbjct: 412 GYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE--THCYALKALL 469

Query: 431 PEVEHYGC-IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE----VEFGE 485
            E     C  +D+  ++G + E+  V   +    + A W A++ A   HG+    +E  E
Sbjct: 470 MEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGEESIELFE 528

Query: 486 RLGKI 490
           R+ K+
Sbjct: 529 RMRKV 533



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 184/396 (46%), Gaps = 56/396 (14%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           + FT+P V KAC+ +     G  +H  V+K GL  DV V ++ I MY  FG V+ A ++ 
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 192 DDGSKSDVICWNALIDGYLK------CGDI--------EG---------------AKEL- 221
                 +++ WN++I G+ +      C D+        EG               A+E+ 
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 222 -----------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                       K    ++    N+++  +++ G   EA+ LF++ N K+ ++W+ +I G
Sbjct: 150 VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209

Query: 271 YTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
               GY  EA  +F EMQ ++ I+  +  +  +L AC  +  L     +H +  R+    
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D ++    V  YAKCG L  A +VF  M+ K V +WNA+IGG A +G    A+ L+ +M 
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI----DPEVEHYGCI--VDLL 443
              + PD  T   +L A AH       L++L Y ++++G       E++ +  I  + L 
Sbjct: 330 YSGLVPDWFTIGSLLLASAH-------LKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLY 382

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              G  + A  +   M  E ++  W A++    ++G
Sbjct: 383 IHCGESSSARLLFDGME-EKSSVSWNAMISGYSQNG 417



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 160/337 (47%), Gaps = 18/337 (5%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           TI  +L    H  S ++ K+ H  +L+ G   D ++  +L+  + +   S+   A  +F+
Sbjct: 339 TIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSS--ARLLFD 396

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            + + +   WN+++    ++  P   + L+ ++V    +P+     +V  ACS   A + 
Sbjct: 397 GMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRL 456

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
           G + H + +K  L  DV V  S I MYA  GC+ ++R + D     D+  WNA+I  Y  
Sbjct: 457 GKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGV 516

Query: 212 CGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT---- 263
            GD E + ELF+  +      +  ++  +++  +  G  EE  K FNEM +   I     
Sbjct: 517 HGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLE 576

Query: 264 -WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG-IWIHDH 321
            ++ ++D   + G   +AL + +EM     +P   V S +L+ C + G L+ G I     
Sbjct: 577 HYACVMDMLGRAGRLDDALRLVHEMPE---QPDSRVWSSLLSFCRNFGELEIGQIVAEKL 633

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           ++     V+  +  +L ++YA  GR D   +V + +K
Sbjct: 634 LELEPKNVENYV--SLSNLYAGSGRWDDVRRVRQMIK 668



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 9/214 (4%)

Query: 273 KDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIW--IHDHVKRNSICV 329
           ++  Y +A+++F ++  D +     F   CV+ AC   G+LD+G+   IH  V +  + +
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLL 64

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  +G AL+ MY K G +D A KVF  M ++ + +WN++I G + +G + D  ++  +M 
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 390 --REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
              E + PD  T   VL  CA    +  G++      ++ G+  +V     +VD+  + G
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKL-GLSEDVRVNNSLVDMYSKCG 183

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           YL EA+ +        NA  W  ++G     G +
Sbjct: 184 YLTEAQMLFDK-NNRKNAVSWNTMIGGLCTKGYI 216


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/686 (32%), Positives = 360/686 (52%), Gaps = 65/686 (9%)

Query: 29  FSQKTILDILNTKCHTSWQHL-KQAHAVILKS-GHFQDHYVSGTLVKCHAN-SRFSNFEL 85
            S  ++  ++ +   T    L + AHA I+K+  +    ++   LV  ++   R ++ +L
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 86  ALKVFNSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
            L +      PN  V  W +++   +++      +  +S M     +PN FT+P  FKA 
Sbjct: 64  LLSL-----TPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKAS 118

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
               +   G QVHA  VK G   DV V  S   MY+  G   +AR++ D+  + ++  WN
Sbjct: 119 GSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWN 178

Query: 204 ALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMI-----SGFARFGR--------- 245
           A +   +  G  + A   F   +    + N  ++ A +     + + R GR         
Sbjct: 179 AYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQS 238

Query: 246 -FEE--------------------ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
            FE                     +  +F+ ++  ++++W ++I  Y ++   ++A  VF
Sbjct: 239 GFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVF 298

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
              +++ I+P  F++S VL+ACA L  L+ G  +H    +  +  +  +G+ALVDMY KC
Sbjct: 299 LRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKC 358

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ--REKMRPDRITFAC 402
           G ++ A + F++M  + + TWNAMIGG A  G+AD A+ LF +M     ++ P+ +TF C
Sbjct: 359 GSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVC 418

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VLSAC+ AG ++ G++    M+  YGI+P  EHY C+VDLLGRAG + +A + I  MP+ 
Sbjct: 419 VLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR 478

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
           P  +VW ALLGA +  G+ E G+     L E++P +               R ++   +R
Sbjct: 479 PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVR 538

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
           K MK+ GIK   G S I     +H F+  D SH +  EI  ML K+  +++  GY P++S
Sbjct: 539 KEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTS 598

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
             LFD++EEEK     YHSEK+A+AFG I+   G  IR+ KNLR+C DCHSA K IS + 
Sbjct: 599 FALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIV 658

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R+IIVRD   +H FR+ +CSC D+W
Sbjct: 659 GREIIVRDNNLFHRFRDNQCSCRDYW 684


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/568 (37%), Positives = 319/568 (56%), Gaps = 67/568 (11%)

Query: 151 EGVQVHAHVVKNGLC-GDVHVKSSGIQMYAC---FGCVNKARQILDDGSKSDVICWNALI 206
           E +QVH  VVK G+   D   K S +  +A    FG +N AR +L      +   +N L+
Sbjct: 8   EALQVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLL 67

Query: 207 DGY-------------------------------LKCGDIEGAKELFKSTKDKNTGS--- 232
             +                               LKC        L K      T     
Sbjct: 68  RAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFA 127

Query: 233 -----YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                 N ++  ++ FG    AR LF+ M  +D ++W+++I G        EA+ +F  M
Sbjct: 128 PDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERM 187

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCG 345
            +  ++  +  +  VL ACA  GAL  G  +H +++   I + +   + TALVDMYAK G
Sbjct: 188 LQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGG 247

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A KVF+D+  ++VF W AMI GLA HG   DAI++F  M+   ++PD  T   VL+
Sbjct: 248 CIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLT 307

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC +AG+I  G    + +Q+ YG+ P ++H+GC+VDLL RAG L EAE+ +++MP+EP+ 
Sbjct: 308 ACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDT 367

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV-------------------AK 506
            +W  L+ AC+ HG+ +  ERL K    +E Q+ R DD                    A+
Sbjct: 368 VLWRTLIWACKVHGDADRAERLMK---HLEIQDMRADDSGSYILASNVYASTGKWCNKAE 424

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R+LM ++G+   PG+S I+V+G +HEF  GD +HP+ +EI++ L ++++K++ EGY P 
Sbjct: 425 VRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPR 484

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
            S+VL ++D+EEK     +HSEKLA+A+G I    G+TIR++KNLR CEDCH   KLISK
Sbjct: 485 VSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISK 544

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++KRDIIVRDR+R+HHF+NG+CSC D+W
Sbjct: 545 IYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/561 (22%), Positives = 238/561 (42%), Gaps = 68/561 (12%)

Query: 46  WQHLKQAHAVILK--SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           W+ L Q H  ++K   GH         +    A S F +   A  + ++    N + +N+
Sbjct: 7   WEAL-QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNT 65

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           +LRA  +   P       S  + + S P+ FT+P + K CS ++    G Q+HA + K G
Sbjct: 66  LLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLG 125

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY-------------- 209
              D+++++  + MY+ FG +  AR + D     DV+ W ++I G               
Sbjct: 126 FAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFE 185

Query: 210 --LKCG-DIEGAK--ELFKSTKDKNTGSY----------------------NAMISGFAR 242
             L+CG ++  A    + ++  D    S                        A++  +A+
Sbjct: 186 RMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAK 245

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G    ARK+F+++  +D   W+A+I G    G  K+A+++F +M+   +KP +  ++ V
Sbjct: 246 GGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAV 305

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMK- 360
           L AC + G + +G  +   V+R      ++     LVD+ A+ GRL  A      M ++ 
Sbjct: 306 LTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEP 365

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQA 419
           +   W  +I    +HG AD A  L   ++ + MR D   ++    +  A  G      + 
Sbjct: 366 DTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEV 425

Query: 420 LTYMQQMYGIDP----EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
              M +   + P     +E  G + + +       EAEE+   +           ++   
Sbjct: 426 RELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVEL---------AEVVDKI 476

Query: 476 RKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG-IKTNPGSSMIDVNGVIHEF 534
           RK G   +  R+ ++LLEM+ + +    +    KL    G I+   GS++     ++   
Sbjct: 477 RKEG---YDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTI----RIVKNL 529

Query: 535 RTGDGSHPQVKEIYLMLKKII 555
           R+ +  H  +K I  + K+ I
Sbjct: 530 RSCEDCHEFMKLISKIYKRDI 550


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/645 (35%), Positives = 341/645 (52%), Gaps = 98/645 (15%)

Query: 27  SEFSQKTIL---------DILNTKCHTSWQHLKQAHAVILKSG------HFQDHYVSGTL 71
           S FS+ ++L         ++L T   +S   L+Q HA  ++ G          H +   L
Sbjct: 2   SPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIF-YL 60

Query: 72  VKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDS 129
           V   +    S    A KVF+ + KP NVF+WN+++R   E        SLY EM V    
Sbjct: 61  VSLPSPPPMS---YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV 117

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +P+  TYP + KA +     + G  +H+ V+++G    ++V+                  
Sbjct: 118 EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQ------------------ 159

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
                        N+L+  Y  CGD+  A                               
Sbjct: 160 -------------NSLLHLYANCGDVASA------------------------------- 175

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            K+F++M +KD + W+++I+G+ ++G  +EAL ++ EM    IKP  F +  +L+ACA +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL  G  +H ++ +  +  +      L+D+YA+CGR++ A  +F++M  K   +W ++I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 370 GGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            GLA++G   +AIELF  M+  E + P  ITF  +L AC+H GM+  G +    M++ Y 
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
           I+P +EH+GC+VDLL RAG + +A E I SMPM+PN  +W  LLGAC  HG+ +  E   
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415

Query: 489 KILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
             +L++EP +              +R  DV K+RK M   G+K  PG S+++V   +HEF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             GD SHPQ   IY  LK++  +L+ EGY P  S V  D++EEEKE A  YHSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVR 639
             I+T   + I V+KNLRVC DCH A KL+SKV+ R+I+VRDR R
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 321/545 (58%), Gaps = 48/545 (8%)

Query: 99  FVWNSVLRACLEH-NEPWR--VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           F+WN ++RA + + + P R   IS+Y  M      P+  T+P +  +         G + 
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
           HA ++  GL  D  V++S + MY+                                CGD+
Sbjct: 85  HAQILLFGLDKDPFVRTSLLNMYS-------------------------------SCGDL 113

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
             A+ +F  +  K+  ++N++++ +A+ G  ++ARKLF+EM +++ I+WS +I+GY   G
Sbjct: 114 RSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCG 173

Query: 276 YYKEALEVFNEMQRDK-----IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            YKEAL++F EMQ  K     ++P +F +S VL+AC  LGAL+QG W+H ++ +  + +D
Sbjct: 174 KYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEID 233

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            VLGTAL+DMYAKCG L+ A +VF  +   K+V  ++AMI  LAM+G  D+  +LF +M 
Sbjct: 234 IVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMT 293

Query: 390 -REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
             + + P+ +TF  +L AC H G+I+ G      M + +GI P ++HYGC+VDL GR+G 
Sbjct: 294 TSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGL 353

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC-----DD 503
           + EAE  I+SMPMEP+  +W +LL   R  G+++  E   K L+E++P N        + 
Sbjct: 354 IKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNV 413

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
            AK  + M+  GI   PG S ++V GV+HEF  GD S  + + IY ML +I+++L+  GY
Sbjct: 414 YAKTGRWME--GINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGY 471

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
             ++ +VL D++E++KE A  YHSEKLAIAF  + T PG  +R+IKNLR+C DCH     
Sbjct: 472 VTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLTGLA 531

Query: 624 ISKVF 628
           ++++F
Sbjct: 532 LAEIF 536



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           ++S   L+ A  V   SG  +D     ++V  +A +     + A K+F+ + + NV  W+
Sbjct: 107 YSSCGDLRSAQRVFDDSGS-KDLPAWNSVVNAYAKAGL--IDDARKLFDEMPERNVISWS 163

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDS-----KPNKFTYPTVFKACSITEADKEGVQVHA 157
            ++   +   +    + L+ EM          +PN+FT  TV  AC    A ++G  VHA
Sbjct: 164 CLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHA 223

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVICWNALIDGYLKCGDIE 216
           ++ K  +  D+ + ++ I MYA  G + +A+++ +  GSK DV  ++A+I      G  +
Sbjct: 224 YIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTD 283

Query: 217 GAKELFK--STKDK---NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSA 266
              +LF   +T D    N+ ++  ++      G   E +  F  M ++  IT     +  
Sbjct: 284 ECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGC 343

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           ++D Y + G  KEA      M    ++P   +   +L+    LG +       +   +  
Sbjct: 344 MVDLYGRSGLIKEAESFIASM---PMEPDVLIWGSLLSGSRMLGDIKTC----EGALKRL 396

Query: 327 ICVDAVLGTALV---DMYAKCGR 346
           I +D +   A V   ++YAK GR
Sbjct: 397 IELDPMNSGAYVLLSNVYAKTGR 419


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 305/527 (57%), Gaps = 40/527 (7%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + +AC  +   +   Q HA ++K G      + +S +  YA   C++ A Q+LD+     
Sbjct: 65  ILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDE----- 119

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           +  W     G+                   +  + N +I+   + G F+ A+++F +M  
Sbjct: 120 MPYW-----GF-------------------DLITANLIIASLMKVGEFDFAKRVFRKMLR 155

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +D +TW+++I G  ++  ++EAL  F EM    ++P  F  + V+  CA LG+      +
Sbjct: 156 RDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELV 215

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  +    I ++ +L +AL+D+Y+KCGR++ A KVF  ++  +V  WN+MI GLA+HG A
Sbjct: 216 HGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLA 275

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            DAI +F +M+ E + PD ITF  +L+AC+H G++++G +    M++ Y I P++EHYG 
Sbjct: 276 LDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGA 335

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE-RLGKI------- 490
           +VDLLGRAG + EA  +I +MPMEP+  +W ALL ACR     E GE  + KI       
Sbjct: 336 MVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLNSGD 395

Query: 491 ---LLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
              L  M     + D   ++R++MK  G++ N G S +++ GVIH+F+ GD SHP+   I
Sbjct: 396 YILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAI 455

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y +L+ +I + K+EG+ P +  VL D+ +EE+E     HSEKLA+A+  + T PG  IRV
Sbjct: 456 YKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRV 515

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLR C DCH   K++S++  R IIVRDR+R+H F  G CSC D+W
Sbjct: 516 SKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 132/290 (45%), Gaps = 18/290 (6%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +   F+ A +VF  + + +V  WNS++  C+ +      +  + EM+  + +P+ FT+ +
Sbjct: 139 KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFAS 198

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V   C+   +      VH  +++  +  +  + S+ I +Y+  G +N A+++ +     D
Sbjct: 199 VINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDD 258

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
           V  WN++I+G    G    A  +F   + ++      ++  +++  +  G  E+ R+ F+
Sbjct: 259 VSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFD 318

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M     I      + A++D   + G  +EA  +   M    ++P   +   +L+AC + 
Sbjct: 319 LMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAM---PMEPDIVIWRALLSACRNF 375

Query: 310 GALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
              + G + I      NS   D +L   L +MY    + D A +V E MK
Sbjct: 376 KNPELGEVAIAKISHLNS--GDYIL---LSNMYCSLEKWDSAERVREMMK 420



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  H +  H ++++     +  +S  L+  +  S+      A KVFNS+   +V VWNS+
Sbjct: 208 SSHHAELVHGLMIEKKIQLNFILSSALIDLY--SKCGRINTAKKVFNSIQHDDVSVWNSM 265

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +     H      I ++S+M      P+  T+  +  ACS     ++G + +  +++   
Sbjct: 266 INGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQG-RRYFDLMRRHY 324

Query: 165 CGDVHVKSSG--IQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAKEL 221
                ++  G  + +    G V +A  ++     + D++ W AL+       + E  +  
Sbjct: 325 SIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVA 384

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                  N+G Y  + + +    +++ A ++  EM  +D +
Sbjct: 385 IAKISHLNSGDYILLSNMYCSLEKWDSAERV-REMMKRDGV 424


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 324/603 (53%), Gaps = 61/603 (10%)

Query: 106 RACLEHNEPWRVI----SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           R C + + P R +    SL S  +  DS     TY  + K C    A  EG  +  H+  
Sbjct: 35  RLCYQRDLP-RAMKAMDSLQSHGLWADSA----TYSELIKCCISNRAVHEGNLICRHLYF 89

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           NG    + + +  I MY  F  +N A Q+ D   + +VI W  +I  Y KC   + A EL
Sbjct: 90  NGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149

Query: 222 F----KSTKDKNTGSYN--------------------------------AMISGFARFGR 245
                +     N  +Y+                                A+I  FA+ G 
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E+A  +F+EM   D I W++II G+ ++     ALE+F  M+R      +  L+ VL A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C  L  L+ G+  H H+ +     D +L  ALVDMY KCG L+ A +VF  MK ++V TW
Sbjct: 270 CTGLALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           + MI GLA +G + +A++LF +M+    +P+ IT   VL AC+HAG+++ G      M++
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +YGIDP  EHYGC++DLLG+AG L +A ++++ M  EP+A  W  LLGACR    +   E
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447

Query: 486 RLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
              K ++ ++P++              ++ D V ++R  M++RGIK  PG S I+VN  I
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  GD SHPQ+ E+   L ++I +L   GY P ++ VL D++ E+ E + ++HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +AFG +       IR+ KNLR+C DCH   KL SK+  R I++R  +RYHHF++GKCSC 
Sbjct: 568 LAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCG 627

Query: 652 DFW 654
           D+W
Sbjct: 628 DYW 630



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 24/236 (10%)

Query: 265 SAIIDGYTKDGYYKE---ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           + ++  +T+  Y ++   A++  + +Q   +       S ++  C S  A+ +G  I  H
Sbjct: 27  TLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRH 86

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           +  N       L   L++MY K   L+ A ++F+ M  + V +W  MI   +       A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 382 IELFFKMQREKMRPDRITFACVLSAC--------AHAGMIDRGLQALTYMQQMYGIDPEV 433
           +EL   M R+ +RP+  T++ VL +C         H G+I  GL++  +++         
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR--------- 197

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
                ++D+  + G   +A  V   M +  +A VW +++G   ++   +    L K
Sbjct: 198 ---SALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFK 249


>gi|413955987|gb|AFW88636.1| hypothetical protein ZEAMMB73_169634 [Zea mays]
          Length = 555

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 316/567 (55%), Gaps = 45/567 (7%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           NS+LRA LE   P +++  YS ++   +  P+  TY  + +AC+        +++H H+ 
Sbjct: 20  NSILRASLEKGSPQKLLMDYSTLLHFTAFCPDYRTYAFLLRACAKCSDLYAAMEIHCHLT 79

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K GL    H+     ++Y   G + +A ++L          W+ L               
Sbjct: 80  KVGLLSKQHITPPLFKLYISHGYMLEACELL----------WSML--------------- 114

Query: 221 LFKSTKDKNTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                 + NT  +  N M+ GF + GR ++A ++F  M  KD I+W+++I G  +  + K
Sbjct: 115 ------EWNTDPFHGNLMLMGFLKSGRLDKAYQIFKRMPVKDLISWNSMIAGAVRSSHLK 168

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           EA+ +F+ +    + P  F  S VL+ACA  GA   G+W+H  +    + ++ +L +ALV
Sbjct: 169 EAMNIFSRLVSSGLVPDCFSFSSVLSACARAGARRYGVWVHHLMTELGVEMNHILSSALV 228

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMYAKCGR+D+A ++F  +K   +  WN MI GLA HG   D + LF KM+ E++ PD +
Sbjct: 229 DMYAKCGRIDVATEIFNKVKGNHISVWNTMISGLASHGLGSDVVILFHKMKSEELVPDGV 288

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           TF  +L+AC+  GM++        M   Y I PEVEHYG +VD L RAG L EA E++ S
Sbjct: 289 TFVALLTACSRCGMVEEARHYFRSMTTEYSITPEVEHYGALVDTLSRAGLLDEAYELVMS 348

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGK-----------ILLEMEPQNRRCDDVAKM 507
           M ++P+  +W ALL ACR++   + GE   +           +L  +     R +D  ++
Sbjct: 349 MNVKPDVVIWRALLSACRRYRHTKLGEATIEHMACHGSGDYTLLSNIYSSANRWNDSEEV 408

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
            K  K++ ++   G S +++ G  HEF+ GD SHP  ++IY++L  +  + K+EGY+P +
Sbjct: 409 WKQRKQKKVRKTKGLSWVELGGSTHEFKAGDRSHPDTEDIYVVLHGLCRRAKVEGYAPLT 468

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
             V  D+ EEE+E    +HSEKLA+A+  + T PG  I V KNL+VC DCH   K+ISKV
Sbjct: 469 ELVTKDVSEEEREENLTFHSEKLAVAYSVLKTGPGTEIMVSKNLQVCSDCHEWMKIISKV 528

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             R II+RDRVR+H F +G CSC D+W
Sbjct: 529 LCRVIILRDRVRFHRFESGWCSCKDYW 555



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F  +   ++  WNS++   +  +     ++++S +V     P+ F++ +V  AC+ 
Sbjct: 139 AYQIFKRMPVKDLISWNSMIAGAVRSSHLKEAMNIFSRLVSSGLVPDCFSFSSVLSACAR 198

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             A + GV VH  + + G+  +  + S+ + MYA  G ++ A +I +    + +  WN +
Sbjct: 199 AGARRYGVWVHHLMTELGVEMNHILSSALVDMYAKCGRIDVATEIFNKVKGNHISVWNTM 258

Query: 206 IDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           I G    G       LF   K +    +  ++ A+++  +R G  EEAR  F  M  +  
Sbjct: 259 ISGLASHGLGSDVVILFHKMKSEELVPDGVTFVALLTACSRCGMVEEARHYFRSMTTEYS 318

Query: 262 IT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           IT     + A++D  ++ G   EA E+   M    +KP   +   +L+AC
Sbjct: 319 ITPEVEHYGALVDTLSRAGLLDEAYELVMSMN---VKPDVVIWRALLSAC 365



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/203 (17%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H ++ + G   +H +S  LV  +A  +    ++A ++FN V   ++ VWN+++     H 
Sbjct: 209 HHLMTELGVEMNHILSSALVDMYA--KCGRIDVATEIFNKVKGNHISVWNTMISGLASHG 266

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ-VHAHVVKNGLCGDVHVK 171
               V+ L+ +M   +  P+  T+  +  ACS     +E      +   +  +  +V   
Sbjct: 267 LGSDVVILFHKMKSEELVPDGVTFVALLTACSRCGMVEEARHYFRSMTTEYSITPEVEHY 326

Query: 172 SSGIQMYACFGCVNKARQ-ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            + +   +  G +++A + ++    K DV+ W AL+    +    +  +   +      +
Sbjct: 327 GALVDTLSRAGLLDEAYELVMSMNVKPDVVIWRALLSACRRYRHTKLGEATIEHMACHGS 386

Query: 231 GSYNAMISGFARFGRFEEARKLF 253
           G Y  + + ++   R+ ++ +++
Sbjct: 387 GDYTLLSNIYSSANRWNDSEEVW 409


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/730 (31%), Positives = 357/730 (48%), Gaps = 109/730 (14%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           T  F  K   +I + +C  S      AHA+ L +G   + +V   LV  +  SR  +   
Sbjct: 129 TFPFVFKACGEISSVRCGES------AHALSLVTGFISNVFVGNALVAMY--SRCRSLSD 180

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVFKACS 144
           A KVF+ +   +V  WNS++ +  +  +P   + ++S M      +P+  T   V   C+
Sbjct: 181 ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCA 240

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS--------- 195
                  G Q+H   V + +  ++ V +  + MYA  G +++A  +  + S         
Sbjct: 241 SLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNA 300

Query: 196 --------------------------KSDVICWNALIDGY-------------------- 209
                                     K DV+ W+A I GY                    
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 210 --------------------------LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                                     + C  I+   +L K+         N +I  +A+ 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420

Query: 244 GRFEEARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD--KIKPRKFVL 299
            + + AR +F+ ++  ++D +TW+ +I GY++ G   +ALE+ +EM  +  + +P  F +
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           SC L ACASL AL  G  IH +  RN    V   +   L+DMYAKCG +  A  VF++M 
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMM 540

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            K   TW +++ G  MHG  ++A+ +F +M+R   + D +T   VL AC+H+GMID+G++
Sbjct: 541 AKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME 600

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M+ ++G+ P  EHY C+VDLLGRAG L  A  +I  MPMEP   VW A L  CR H
Sbjct: 601 YFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIH 660

Query: 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSM 524
           G+VE GE   + + E+   +               R  DV ++R LM+ +G+K  PG S 
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSW 720

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           ++       F  GD +HP  KEIY +L   ++++K  GY P +   L D+D+EEK+    
Sbjct: 721 VEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLF 780

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSEKLA+A+G + T  GA IR+ KNLRVC DCH+A   +S++   DII+RD  R+HHF+
Sbjct: 781 EHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFK 840

Query: 645 NGKCSCNDFW 654
           NG CSC  +W
Sbjct: 841 NGSCSCKGYW 850



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 227/499 (45%), Gaps = 90/499 (18%)

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
           V+ WNS++R+  ++    + + L+  M  +   P+ +T+P VFKAC    + + G   HA
Sbjct: 92  VYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHA 151

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
             +  G   +V V ++ + MY+    ++ AR++ D+ S  DV+ WN++I+ Y K G  + 
Sbjct: 152 LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211

Query: 218 AKELFKSTKD----------------------------------------KNTGSYNAMI 237
           A E+F    +                                        +N    N ++
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK------ 291
             +A+ G  +EA  +F+ M+ KD ++W+A++ GY++ G +++A+ +F +MQ +K      
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331

Query: 292 -----------------------------IKPRKFVLSCVLAACASLGALDQGIWIHDH- 321
                                        IKP +  L  VL+ CAS+GAL  G  IH + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 322 ------VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLA 373
                 +++N    + ++   L+DMYAKC ++D A  +F+ +  KE  V TW  MIGG +
Sbjct: 392 IKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYS 451

Query: 374 MHGRADDAIELFFKMQRE--KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            HG A+ A+EL  +M  E  + RP+  T +C L ACA    +  G Q   Y  +      
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +    C++D+  + G +++A  V  +M M  N   W +L+     HG   +GE    I 
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHG---YGEEALGIF 567

Query: 492 LEMEPQNRRCDDVAKMRKL 510
            EM     + D V  +  L
Sbjct: 568 DEMRRIGFKLDGVTLLVVL 586


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 323/609 (53%), Gaps = 62/609 (10%)

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF----KACSITEADKE 151
           P+V  + S+LR  + H      I L+ +M     + N  TY  +      A  + EA K 
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQM----PERNHVTYTVLLGGFLDAGRVNEARK- 164

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
                  +       DV  +++ +  Y   G + +AR + D+  K +V+ W A+I GY +
Sbjct: 165 -------LFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND------------- 258
            G +  A++LF+   D+N  S+ AM+ G+ + G  E+A  LFN M D             
Sbjct: 218 NGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGF 277

Query: 259 ------------------KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
                             +D+ TWSA+I  Y ++ +  EAL  F EM    I+P      
Sbjct: 278 GQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFI 337

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
            +L  CA+L   D G  +H  + R S   D    +AL+ MY KCG LD A +VF   + K
Sbjct: 338 SILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPK 397

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +V  WN+MI G A HG  ++A+ +F  ++  +M PD IT+  VL+AC++ G +  G +  
Sbjct: 398 DVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIF 457

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             M     I     HY C+VDLLGRAG + EA ++I++MP+EP+A +W AL+GACR H  
Sbjct: 458 NSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKN 517

Query: 481 VEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSSMID 526
            E  E   K LLE+EP                 R +D + MRK +  R +  +PG S I+
Sbjct: 518 AEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIE 577

Query: 527 VNGVIHEFRTGDG-SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
            N ++H F +GD  SHP+   I  ML+++   L   GYS + S VL D+DEE+K  + +Y
Sbjct: 578 YNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRY 637

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSE+ A+A+G +    G  IRV+KNLRVC DCHSA KLI+K+  R+II+RD  R+HHF++
Sbjct: 638 HSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKD 697

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 698 GLCSCRDYW 706



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 146/350 (41%), Gaps = 57/350 (16%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS--- 238
           G +  AR   D         +NALI GY +    + A  LF     ++ GSYNA+I+   
Sbjct: 31  GNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLS 90

Query: 239 ------------------------------GFARFGRFEEARKLFNEMNDKDEITWSAII 268
                                         G+ R G   +A +LF++M +++ +T++ ++
Sbjct: 91  LRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLL 150

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            G+   G   EA ++F+EM    +  R  +LS    A    G + +   + D + + ++ 
Sbjct: 151 GGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQA----GRITEARALFDEMPKRNV- 205

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
              V  TA++  YA+ G++ +A K+FE M  +   +W AM+ G    G  +DA +LF  M
Sbjct: 206 ---VSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAM 262

Query: 389 QREKMRPDRITFAC--VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
                 PD    AC  ++      GM+D    A    ++M   D     +  ++ +  + 
Sbjct: 263 ------PDHPVAACNAMMVGFGQHGMVD---AAKAMFERMCARDDGT--WSAMIKVYEQN 311

Query: 447 GYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
            +L EA      M    + PN   + ++L  C      ++G  L   +L 
Sbjct: 312 EFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR 361



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 164/364 (45%), Gaps = 34/364 (9%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
           + L   +   V+  NA I   ++ G+IEGA+  F +   + T SYNA+I+G+ R    + 
Sbjct: 7   RFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDA 66

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  LF+ M  +D  +++A+I G +   +     +    +    + P     + +L     
Sbjct: 67  ALGLFHRMPSRDLGSYNALIAGLSLRRHTLP--DAAAALASIPLPPSVVSFTSLLRGYVR 124

Query: 309 LGALDQGIWI-HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            G L   I + H   +RN +    +LG      +   GR++ A K+F++M  K+V    A
Sbjct: 125 HGLLADAIRLFHQMPERNHVTYTVLLGG-----FLDAGRVNEARKLFDEMPDKDVVARTA 179

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           M+ G    GR  +A  LF +M +  +    +++  ++S  A  G +          ++++
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKV-------ILARKLF 228

Query: 428 GIDPEVEHYGCIVDLLG--RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG- 484
            + P+         L+G  +AG++ +AE++ ++MP  P AA   A++    +HG V+   
Sbjct: 229 EVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAAC-NAMMVGFGQHGMVDAAK 287

Query: 485 ---ERL-------GKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
              ER+          ++++  QN    +     + M  RGI+ N  +S I +  V    
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPN-YTSFISILTVCAAL 346

Query: 535 RTGD 538
            T D
Sbjct: 347 ATAD 350



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 14/218 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA +L+     D +    L+  +   +  N + A +VFN     +V +WNS++    
Sbjct: 353 RELHAAMLRCSFDTDVFAVSALITMYI--KCGNLDKAKRVFNMFEPKDVVMWNSMITGYA 410

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG--LCGD 167
           +H      + ++ ++      P+  TY  V  ACS T   KEG ++   +  N     G 
Sbjct: 411 QHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGA 470

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIE----GAKELF 222
            H  S  + +    G V++A  ++++   + D I W AL+       + E     AK+L 
Sbjct: 471 AHY-SCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLL 529

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEA---RKLFNEMN 257
           +  +  + G Y  +   +   GR+E+A   RK  +  N
Sbjct: 530 E-LEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRN 566


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/530 (36%), Positives = 296/530 (55%), Gaps = 49/530 (9%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV-KCHANSRFSNFE 84
           +S F    IL     +  TS   L QAHA ILKSG     + +  L+     NS      
Sbjct: 2   SSSFPPPPILSF--AEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP 59

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A  +F+ +  PN ++WN+++RA      P   ++++ +M+     P+K+T+    K+C 
Sbjct: 60  YAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCG 119

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                +EG Q+H HV+K GL  D+ ++                               N 
Sbjct: 120 SFSGVEEGRQIHGHVLKTGLGDDLFIQ-------------------------------NT 148

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA-RKLFNEMNDKDEIT 263
           LI  Y  CG IE A+ L     +++  S+NA++S +A  G  E A R++F E   K+ ++
Sbjct: 149 LIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVS 208

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           W+A+I GY+  G + E L +F +MQ   +KP    L  VL+ACA +GAL QG W+H ++ 
Sbjct: 209 WNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID 268

Query: 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383
           +N I +D  + TALVDMY+KCG ++ A +VF     K++ TWN++I GL+ HG    A++
Sbjct: 269 KNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQ 328

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           +F +M  E  +P+ +TF CVLSAC+ AG++D G +    M  ++GI P +EHYGC+VDLL
Sbjct: 329 IFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLL 388

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---- 499
           GR G L EAEE++  MP +  + VWE+LLGACR HG VE  ER+ + LLE+ PQ      
Sbjct: 389 GRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFV 448

Query: 500 ----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
                     R  DV ++R+ M+ +G++ +PG SMI+V+G ++EF  G+G
Sbjct: 449 QLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGEG 498


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/673 (34%), Positives = 350/673 (52%), Gaps = 63/673 (9%)

Query: 43  HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWN 102
           H+S    +  HA + + G   D  V+  LV  +   R  + + ++ VF ++   N   WN
Sbjct: 250 HSSLPLARSIHARVEELGFLGDVVVATALVTMYG--RCGSVDESIAVFEAMAVRNHVSWN 307

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEAD-KEGVQVHAHVV 160
           +++ A  +        ++Y  M     +PNK T+ T  KA CS +  D  E   +H  + 
Sbjct: 308 AMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIA 367

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
             GL GDV V ++ + MY   G +++AR   D     +++ WNA++  Y   G    A E
Sbjct: 368 CAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAME 427

Query: 221 LFKSTKDK----NTGSY---------------------------------NAMISGFARF 243
           LF + K +    N  SY                                 N ++  FAR 
Sbjct: 428 LFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARS 487

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  EEA   F+    KD ++W+  +   +       A+  F  MQ +  +P KF L  V+
Sbjct: 488 GSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVV 547

Query: 304 AACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGR-LDMAWKVFEDMK--M 359
             CA LG L+ G  I   +     +  D V+ +A+++M AKCG  +D   ++F  M    
Sbjct: 548 DVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDR 607

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K++  WN MI   A HG    A++LF  MQ R  +RPD  TF  VLS C+HAG+++ G+ 
Sbjct: 608 KDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIH 667

Query: 419 ALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                +++ GI+ + VEHY C+VD+LGR GYL EAE+ I  MP+  ++ VW +LLGAC  
Sbjct: 668 CFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSS 727

Query: 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTN-PGS 522
           +G++E GER  +  +E+   +               R +D  ++R+ M ER +K   PG 
Sbjct: 728 YGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRVPGK 787

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I V   +HEF   D SHPQ   IY  L+++   ++  GY P++  VL D++EE+KE  
Sbjct: 788 SSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQL 847

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
             YHSEKLAIAFG I+     +IRVIKNLRVC+DCH+ATK I++V +R+I VRD  R+HH
Sbjct: 848 LWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHH 907

Query: 643 F-RNGKCSCNDFW 654
           F ++G+CSC D+W
Sbjct: 908 FGKDGECSCGDYW 920



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 211/474 (44%), Gaps = 50/474 (10%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLY 121
           +D +V+  L+   A  +    E AL+VF+ +  P++  WN+ + AC  ++E P R + L 
Sbjct: 168 RDLFVATALLD--AYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLV 225

Query: 122 SEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF 181
             M      PN+ ++  +  +C    +      +HA V + G  GDV V ++ + MY   
Sbjct: 226 RRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRC 285

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA--------KELFK---------- 223
           G V+++  + +  +  + + WNA+I  + +CG    A        +E F+          
Sbjct: 286 GSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTAL 345

Query: 224 ----STKDKNTGSY-------------------NAMISGFARFGRFEEARKLFNEMNDKD 260
               S+  ++ G                      A+++ +   G  + AR  F+ +  K+
Sbjct: 346 KAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 405

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++W+A++  Y  +G  +EA+E+F  M+R  + P K     VL  C     + +   IH 
Sbjct: 406 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHA 462

Query: 321 HVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
            V  N +   ++ +   +V M+A+ G L+ A   F+   +K+  +WN  +  L+      
Sbjct: 463 EVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLH 522

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            AI  F+ MQ E  RPD+ T   V+  CA  G ++ G      +     ++ +V     +
Sbjct: 523 GAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAV 582

Query: 440 VDLLGRAG-YLAEAEEVISSMPME-PNAAVWEALLGACRKHGEVEFGERLGKIL 491
           ++++ + G  + E E + + MP +  +   W  ++ A  +HG      +L +I+
Sbjct: 583 MNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIM 636



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 207/510 (40%), Gaps = 87/510 (17%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  I+K G  ++  +   LV+ ++  R  + + A   F+++    +  WN+++ A  
Sbjct: 44  RQLHRQIVKQGLARNDLLGNYLVQMYSKCR--SLDDANAAFSALRSRGIATWNTLIAA-- 99

Query: 110 EHNEPWRVISLYSEMV---GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             + P  V  LY+ M      +++PNK T   V  A  I   D                 
Sbjct: 100 -QSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGA--IASGDPSSSSS----------- 145

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDD--GS--KSDVICWNALIDGYLKCGDIEGAKELF 222
               ++  I          +AR + DD  GS  + D+    AL+D Y KCG +E A E+ 
Sbjct: 146 ---SRAPSIA---------QARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEV- 192

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW-SAIIDGYTKDGYYKEAL 281
                                         F+ +   D I W +AI+     D     AL
Sbjct: 193 ------------------------------FSRIQVPDLICWNAAIMACAGNDERPDRAL 222

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            +   M  + + P +     +L++C    +L     IH  V+      D V+ TALV MY
Sbjct: 223 LLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMY 282

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            +CG +D +  VFE M ++   +WNAMI   A  G    A  ++++MQ+E  RP++ITF 
Sbjct: 283 GRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFV 342

Query: 402 CVLSACAHAGMIDRG-LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             L A   +   D G   AL       G++ +V     +V + G  G +  A     ++P
Sbjct: 343 TALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIP 402

Query: 461 MEPNAAVWEALLGACRKHGEV-EFGERLGKILLEMEPQNRR--------CDDVAKMRKLM 511
            + N   W A+L A   +G   E  E    +  +    N+         C+DV++ R + 
Sbjct: 403 AK-NIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIH 461

Query: 512 KE---RGIKTNPGSSMIDVNGVIHEF-RTG 537
            E    G+     S     NGV+  F R+G
Sbjct: 462 AEVVGNGLFAQESSI---ANGVVRMFARSG 488



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L+ +L  C     L QG  +H  + +  +  + +LG  LV MY+KC  LD A   F  ++
Sbjct: 27  LAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALR 86

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKM---QREKMRPDRITFACVLSACAHAGMIDR 415
            + + TWN +I   A         +L+ +M   +R + RP+++T   VL A A       
Sbjct: 87  SRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSSS 143

Query: 416 GL-------QALTYMQQMYGIDPEVEHY--GCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
                    QA      + G D E + +    ++D  G+ G +  A EV S + + P+  
Sbjct: 144 SSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQV-PDLI 202

Query: 467 VWEALLGACRKHGE 480
            W A + AC  + E
Sbjct: 203 CWNAAIMACAGNDE 216


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 321/575 (55%), Gaps = 55/575 (9%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD- 193
           TY  + K C+ ++A  EG +VH+ +VK+G   D  + +  I+MY   G + +AR + D  
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 194 -GSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-------------------------- 226
               +DVI WN +I  Y + G  + A  LFK+                            
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 227 -------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
                        + +T    ++++ F +    + AR +F+ +  K+ +TW+ ++  Y++
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +   K+A++VF  M  + ++P       ++ ACA+L A  +G  +HD +  + I +D  L
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           GTA++  Y KCGRLD A  +F+ +  K   TW+A++   A +G   +AIEL+ +M +  +
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
             + ITF  +L AC+HAG    G+     M + +G+ P  EHY  ++DLLGR+G L  +E
Sbjct: 326 EVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSE 385

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR-------------- 499
           ++I+SMP EP+++ W ALLGACR HG+V+ G R+ +++ E++P++               
Sbjct: 386 DLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTG 445

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R D+  + RK M+ RGI   PG S I+V   +HEF      HPQ+  I+  ++++  ++K
Sbjct: 446 RMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVK 505

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY  +   VL D++EEEKE    YHSE+LAIAFG I+T PG  + ++KNLRVC DCH+
Sbjct: 506 EAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHA 565

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A K ISKV  R I+VRD +R+HHF NG CSC D+W
Sbjct: 566 AVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 172/407 (42%), Gaps = 50/407 (12%)

Query: 37  ILNTKCHTSWQHL--KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           +L  KC  S   L  K+ H+ ++K G+  D  ++  L++ +   +      A  VF+ + 
Sbjct: 29  LLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYG--KCGGIAEARSVFDQIQ 86

Query: 95  KPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           + N  V  WN ++ A  ++      + L+  M       N+ T      AC+   +++EG
Sbjct: 87  EKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEG 146

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY--- 209
             VHA  V   L  D  V +S + M+     V+ AR + D   + +++ WN ++  Y   
Sbjct: 147 RIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQN 206

Query: 210 ---------LKCGDIEGAK---------------------------ELFKSTKDKNTGSY 233
                     +  D+EG +                           ++  S    +    
Sbjct: 207 WQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALG 266

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
            A++  + + GR + AR +F+ +  K+ +TWSAI+  Y ++GY  EA+E+++EM +  ++
Sbjct: 267 TAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLE 326

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-TALVDMYAKCGRLDMAWK 352
                   +L AC+  G    G+     + R+   V        L+D+  + G+L ++  
Sbjct: 327 VNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSED 386

Query: 353 VFEDMKMK-EVFTWNAMIGGLAMHGRADDA---IELFFKMQREKMRP 395
           +   M  + +   W A++G   MHG  D      EL +++  E   P
Sbjct: 387 LINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGP 433



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 141/319 (44%), Gaps = 15/319 (4%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA+ +      D  V  +LV      +  N + A  VF+S+ + N+  WN+++    ++ 
Sbjct: 150 HAIAVDKRLESDTMVGTSLVNMFGKCK--NVDAARAVFDSLPRKNLVTWNNMVAVYSQNW 207

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +  + I ++  M     +P+  T+ T+  AC+   A  EG  VH  +  +G+  DV + +
Sbjct: 208 QCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGT 267

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKSTKDK 228
           + +  Y   G ++ AR I D   K + + W+A++  Y + G     IE   E+ +   + 
Sbjct: 268 AVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEV 327

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEV 283
           N  ++  ++   +  GR  +    F  M     +      +  +ID   + G  + + ++
Sbjct: 328 NGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDL 387

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
            N M     +P       +L AC   G +D+G  I + +       D+     L ++Y+ 
Sbjct: 388 INSM---PYEPDSSAWLALLGACRMHGDVDRGARIAELIYELD-PEDSGPYILLSNLYSS 443

Query: 344 CGRLDMAWKVFEDMKMKEV 362
            GR+D A +  + M+++ +
Sbjct: 444 TGRMDEARRTRKAMRLRGI 462


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/730 (31%), Positives = 358/730 (49%), Gaps = 109/730 (14%)

Query: 26  TSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           T  F  K   +I + +C  S      +HA+   +G   + +V   LV  +  SR  +   
Sbjct: 129 TFPFVFKACGEISSVRCGDS------SHALSRVTGFMSNVFVGNALVAMY--SRCGSLSD 180

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVFKACS 144
           A KVF+ +   +V  WNS++ +  +  +P   + ++S+M      +P+  T   V   C+
Sbjct: 181 ARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCA 240

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA----------------- 187
                  G Q H   V + +  ++ V +  + MYA FG +++A                 
Sbjct: 241 SVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNA 300

Query: 188 ------------------RQILDDGSKSDVICWNALIDGY-------------------- 209
                              Q+ ++  K DV+ W+A I GY                    
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 210 --------------------------LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                                     + C  I+   +L K+         N +I  +A+ 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKC 420

Query: 244 GRFEEARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD--KIKPRKFVL 299
            + + AR +F+ ++  ++D +TW+ +I GY++ G   +ALE+ +EM  +  + +P  F +
Sbjct: 421 KKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           SC L ACASL AL  G  IH +  RN    V   +   L+DMYAKCG +  A  VF++M 
Sbjct: 481 SCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMM 540

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            K   TW +++ G  MHG  ++A+ +F +M+R   + D +T   VL AC+H+GMID+G++
Sbjct: 541 EKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME 600

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M+  +G+ P  EHY C+VDLLGRAG L  A  +I  MPMEP   VW ALL  CR H
Sbjct: 601 YFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIH 660

Query: 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSM 524
           G+VE GE   K + E+   N               R  DV ++R LM+ +GIK  PG S 
Sbjct: 661 GKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSW 720

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           ++       F  GD +HP  KEIY +L   ++++K  GY P +   L D+D+EEK+    
Sbjct: 721 VEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLF 780

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
            HSEKLA+A+G + T  GA IR+ KNLRVC DCH+A   +S++   +II+RD  R+HHF+
Sbjct: 781 EHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFK 840

Query: 645 NGKCSCNDFW 654
           NG CSC  +W
Sbjct: 841 NGLCSCKGYW 850



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 225/496 (45%), Gaps = 90/496 (18%)

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA 157
           V+ WNS++R+   +    + +S +  M  +   P+ +T+P VFKAC    + + G   HA
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
                G   +V V ++ + MY+  G ++ AR++ D+    DV+ WN++I+ Y K G  + 
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 218 AKELFKSTKD----------------------------------------KNTGSYNAMI 237
           A E+F    +                                        +N    N ++
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK------ 291
             +A+FG  +EA  +F+ M  KD ++W+A++ GY++ G +++A+ +F +MQ +K      
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331

Query: 292 -----------------------------IKPRKFVLSCVLAACASLGALDQGIWIHDH- 321
                                        IKP +  L  VL+ CAS+GAL  G  IH + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 322 ------VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLA 373
                 +++N    + ++   L+DMYAKC ++D+A  +F+ +  KE  V TW  MIGG +
Sbjct: 392 IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYS 451

Query: 374 MHGRADDAIELFFKMQRE--KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
            HG A+ A+EL  +M  E  + RP+  T +C L ACA    +  G Q   Y  +      
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAV 511

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            +    C++D+  + G + +A  V  +M ME N   W +L+     HG   +GE    I 
Sbjct: 512 PLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG---YGEEALGIF 567

Query: 492 LEMEPQNRRCDDVAKM 507
            EM     + D V  +
Sbjct: 568 EEMRRIGFKLDGVTLL 583



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKE--VFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           L + L+  Y   G L  A  +       +  V+ WN++I     +GRA+  +  F  M  
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHS 120

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
               PD  TF  V  AC     +  G  +   + ++ G    V     +V +  R G L+
Sbjct: 121 LSWTPDNYTFPFVFKACGEISSVRCG-DSSHALSRVTGFMSNVFVGNALVAMYSRCGSLS 179

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +A +V   MP+  +   W +++ +  K G+
Sbjct: 180 DARKVFDEMPVW-DVVSWNSIIESYAKLGK 208


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/624 (34%), Positives = 337/624 (54%), Gaps = 84/624 (13%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           L Q HA I+ SG+ +   +   L+   C A S         ++F +V  P+ F++ S+++
Sbjct: 28  LHQVHAHIIVSGYGRSRSLLTKLLNLACAAGS----ISYTRQIFLAVPNPDSFLFTSLIK 83

Query: 107 ACLE-HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           +  + HN     +  YS MV  +  P+ +T+ +V K+C+   A K G  VH HV+ +G  
Sbjct: 84  STSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFG 143

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            DV+V++                               AL+  Y KCGD+          
Sbjct: 144 LDVYVQA-------------------------------ALVALYGKCGDLI--------- 163

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                                  ARK+F+++ ++  + W+++I GY ++G+ KEA+ +F+
Sbjct: 164 ----------------------NARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFD 201

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M+   ++P       VL+ACA LGA   G W+H+++  N + ++ VLGT+L++MY +CG
Sbjct: 202 RMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCG 261

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A +VF+ MK + V  W AMI G   +G    A+ELF +M+R  + P+ ITF  VLS
Sbjct: 262 NVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLS 321

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSMPMEPN 464
           ACAHAG+++ G +    +++ Y + P VEH  C+VD+LGRAG L EA   I   +P  P 
Sbjct: 322 ACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPA 381

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
            A+  A+LGAC+ H   + G ++ + LL  EP+N               R D V  +R  
Sbjct: 382 PAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNN 441

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M  + +K   G S ++V+   + F  GD SH +   IY  L +++ K    GY P S  V
Sbjct: 442 MIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSV 501

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           + +++EEE+E A +YHSEKLAIAFG + T  G  IR++KNLR+CEDCHSA K IS +  R
Sbjct: 502 MHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSR 561

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +IIVRD++R+HHF+ G CSC D+W
Sbjct: 562 EIIVRDKLRFHHFKVGSCSCLDYW 585



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 14/326 (4%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           ++ +H +  H  +L  G   D YV   LV  +   +  +   A KVF+ + + ++  WNS
Sbjct: 125 SALKHGRVVHGHVLVHGFGLDVYVQAALVALYG--KCGDLINARKVFDKIRERSIVAWNS 182

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    ++      I L+  M     +P+  T+ +V  AC+   A   G  VH ++V NG
Sbjct: 183 MISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNG 242

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
           L  +V + +S I MY   G V+KAR++ D   + +V+ W A+I GY   G    A ELF 
Sbjct: 243 LDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFH 302

Query: 224 STKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA-----IIDGYTKD 274
             +      N+ ++ A++S  A  G   E R+LF  + ++  +         ++D   + 
Sbjct: 303 EMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRA 362

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G   EA     E   +   P   +L+ +L AC      D G  + +H+       +    
Sbjct: 363 GLLDEAYNFIKEEIPE--NPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAE-PENPAHY 419

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMK 360
             L ++YA  GR+D    V  +M  K
Sbjct: 420 VILSNIYALAGRMDQVEIVRNNMIRK 445


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/503 (38%), Positives = 296/503 (58%), Gaps = 19/503 (3%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC  S   LKQ  + ++ +G  +D + S  L+   A S + + +    +  +   PN F 
Sbjct: 59  KC-KSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFS 117

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
           WN  +R  L+   P   + LY  ++  D +KP+ +TYP +FKAC+     + G ++  HV
Sbjct: 118 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 177

Query: 160 VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           +  G   D+ V ++ I +    G ++ AR++ D     D++ WN++I+GY  CG++E A+
Sbjct: 178 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESAR 235

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           +LF S  +K   S+  M+ G+A+ G  + A KLF+EM DKD + W+A+I GY      KE
Sbjct: 236 KLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKE 295

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL +FNEMQ   I P +  +   L+AC+ LGALD GIWIH +++++ + ++  LGTAL+D
Sbjct: 296 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 355

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG++  A +VF+++  +   TW A+I GLA+HG A  AI  F +M    + PD +T
Sbjct: 356 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 415

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  +LSAC H G+++ G +  + M   + + P+++HY C+VDLLGRAG L EAEE+I SM
Sbjct: 416 FLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSM 475

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVA 505
           P+E +A VW AL  ACR HG V  GER    LL+M+P +                  +  
Sbjct: 476 PIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAG 535

Query: 506 KMRKLMKERGIKTNPGS-SMIDV 527
           K RKLM++RG++  P S S++ V
Sbjct: 536 KARKLMRQRGVEKTPDSWSLLSV 558


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 265/443 (59%), Gaps = 14/443 (3%)

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           K  N    NA+++ + R G  EEARK+F+ M+  D  +W+ +I   T++    EALE+F+
Sbjct: 7   KSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFH 66

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M  + I P    L+ VL ACA  GAL  G  IH  +  +      +  TAL+DMYAKCG
Sbjct: 67  RMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCG 126

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L+ + KVF  M+ +   +W AMI  LA HG+ D+A+ELF +M  E M  D  TF CVL 
Sbjct: 127 SLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLR 186

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+HAG+I   L+    M + Y I P   HY   +D +GRAG L +AEE+I SMP  P  
Sbjct: 187 ACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPET 246

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLM 511
             W+ LL ACR H + E   ++ ++L ++ P++               R  D  ++RK M
Sbjct: 247 VTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSM 306

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
            +RG+K  PG S I+V   +HEF  GD +HP   EI L L+K+  +++  GY PN+  VL
Sbjct: 307 TDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVL 366

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
             ++EEEKE     HSEKLAIAFG I T PG  + ++KNLRVC DCH+ATK+I+K+ +R 
Sbjct: 367 HAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRR 426

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I+VRD  R+HHF +G+CSC D+W
Sbjct: 427 IVVRDTHRFHHFEDGQCSCKDYW 449



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 75/322 (23%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R  + E A KVF+++  P+ F W +++ AC E+ E    + L+  M      P   T  +
Sbjct: 23  RCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIPPTSVTLAS 82

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC+ + A K G Q+H+ +  +G                                 S 
Sbjct: 83  VLNACACSGALKVGKQIHSRLDASGF-------------------------------HSS 111

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           V+   AL+D Y KCG +E + ++F + + +N+ S+ AMI+  A+ G+ +EA +LF EMN 
Sbjct: 112 VLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNL 171

Query: 259 K----DEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALD 313
           +    D  T+  ++   +  G  KE+LE F+ M  D  I P +                 
Sbjct: 172 EGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTE----------------- 214

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGL 372
                  H  R             +D   + GRL  A ++   M    E  TW  ++   
Sbjct: 215 ------THYCRA------------LDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNAC 256

Query: 373 AMHGRADDAI---ELFFKMQRE 391
            +H +A+ A    EL  K+  E
Sbjct: 257 RIHSQAERATKVAELLAKLAPE 278



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 102/262 (38%), Gaps = 26/262 (9%)

Query: 9   DLPHHLKPEEISATNIPTSEFSQKTILDILNT-KCHTSWQHLKQAHAVILKSGHFQDHYV 67
           +L H +  E I  T++        T+  +LN   C  + +  KQ H+ +  SG       
Sbjct: 63  ELFHRMNLEGIPPTSV--------TLASVLNACACSGALKVGKQIHSRLDASGFHSSVLA 114

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
              L+  +A  +  + E + KVF ++   N   W +++ A  +H +    + L+ EM   
Sbjct: 115 QTALLDMYA--KCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLE 172

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
               +  T+  V +ACS     KE ++    +V+     D  +  +          + +A
Sbjct: 173 GMVADATTFICVLRACSHAGLIKESLEFFHSMVE-----DYAIAPTETHYCRALDTIGRA 227

Query: 188 RQILDDGS-------KSDVICWNALIDGYLKCGDIEGAK---ELFKSTKDKNTGSYNAMI 237
            ++ D            + + W  L++        E A    EL      +++ +Y  + 
Sbjct: 228 GRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLG 287

Query: 238 SGFARFGRFEEARKLFNEMNDK 259
           + +A   R+ +  ++   M D+
Sbjct: 288 NVYAATERYGDQMRVRKSMTDR 309


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 334/597 (55%), Gaps = 52/597 (8%)

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           +KC+A       ++A ++F+     N+ + N++    +        + + + M+    +P
Sbjct: 281 MKCNA------IDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRP 334

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           ++ +  +   +CS       G   H +V++NG                            
Sbjct: 335 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGF--------------------------- 367

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
                 D IC NALID Y+KC   + A  +F    +K   ++N++++G+   G  + A +
Sbjct: 368 ---ESWDNIC-NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWE 423

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLG 310
            FN M +K+ ++W+ II    ++  Y+EA+EVF+ MQ  + +      +  + +AC  LG
Sbjct: 424 TFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLG 483

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           ALD   WI+ ++++N I +D  LGT LVDM+++CG  + A  +F  +  ++V  W A IG
Sbjct: 484 ALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 543

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
            +AM G  + AIELF +M  + ++PD + F   L+AC H G++ +G +    M++++G+ 
Sbjct: 544 AMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVS 603

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG------ 484
           PE  HYGC+VDLLGRAG L EA ++I  MP EPN  +W +LL ACR  G VE        
Sbjct: 604 PEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEK 663

Query: 485 ------ERLGKILL--EMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
                 ER G  +L   +     R +D+AK+R  MKE+G++  PG+S+I + G  HEF +
Sbjct: 664 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTS 723

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD SHP++++I  ML ++ ++    G+ P+ S VL D+DE+EK      HSEKLA+AFG 
Sbjct: 724 GDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGL 783

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           I+++ G TIR++KNLRVC  CHS  K  SKV+ R+II+RD  R+H  R GKCSC+DF
Sbjct: 784 ISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 204/487 (41%), Gaps = 77/487 (15%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLV--KCHANSRFSNFELALKVF-NSVHKPNVFVWNSV 104
            LK  H  + K G   D      LV   C   +R S    A +VF N       F++NS+
Sbjct: 46  ELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRES-LSFAKEVFENGESYGTCFMYNSL 104

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +R           I L+  M+     P+K+T+P     C+ +     G+Q+H  ++K   
Sbjct: 105 IRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDY 164

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY--------------- 209
             D+ V++S +  YA  G ++ AR++ D+ S+ +V+ W ++I GY               
Sbjct: 165 AKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFR 224

Query: 210 ---------------------LKCGDIEGAKELFKSTKDKNTGSYNAMISG----FARFG 244
                                 K  D+E  ++++   +D      + MIS     + +  
Sbjct: 225 MVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCN 284

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
             + A++LF+E    +    +A+   Y + G  KEAL V N M    I+P +  +   ++
Sbjct: 285 AIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAIS 344

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           +C+ L  +  G   H +V RN       +  AL+DMY KC R D A+++F+ M  K V T
Sbjct: 345 SCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 404

Query: 365 WNAMIGGLAMHGRAD-------------------------------DAIELFFKMQ-REK 392
           WN+++ G   +G  D                               +AIE+F  MQ +E 
Sbjct: 405 WNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQEC 464

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           +  D +T   + SAC H G +D       Y+++   I  +V     +VD+  R G    A
Sbjct: 465 VNVDGVTMMSIASACGHLGALDLAKWIYYYIEK-NRIQLDVRLGTTLVDMFSRCGDPESA 523

Query: 453 EEVISSM 459
             + +S+
Sbjct: 524 MSIFNSL 530


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 336/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA ++++    D YV+  LV+ +A  +   F+ A  VFNS+H  N   W  ++   L
Sbjct: 290 KQLHAQVIRNLPCIDPYVASALVELYA--KCGCFKEAKGVFNSLHDRNNVAWTVLIAGFL 347

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +H      + L+++M       ++F   T+   C        G Q+H+      LC    
Sbjct: 348 QHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS------LC---- 397

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           +KS  IQ                      V+  N+LI  Y KC +++ A+ +F+   +K+
Sbjct: 398 LKSGQIQA---------------------VVVSNSLISMYAKCDNLQSAESIFRFMNEKD 436

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+  ++ G   +AR+ F+ M+ K+ ITW+A++  Y + G  ++ L ++N M  
Sbjct: 437 IVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLS 496

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           +K ++P       +   CA LGA   G  I     +  + +D  +  A++ MY+KCGR+ 
Sbjct: 497 EKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRIL 556

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A KVF+ + +K++ +WNAMI G + HG    AIE+F  + +   +PD I++  VLS C+
Sbjct: 557 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M++++ I P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 617 HSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVW 676

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 677 GALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDK 736

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++VN  +H F+  D SHPQV  I   L +++EK+   GY           
Sbjct: 737 GIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGY--------VRT 788

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D    E    +HSEKLA+AFG ++      I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 789 DSPRSEI---HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVI 845

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF  G CSC D+W
Sbjct: 846 RDAVRFHHFNGGSCSCGDYW 865



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 195/439 (44%), Gaps = 63/439 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACS 144
           A+++F  +   +V  WN+++    +  +    +  +  M    DS PN FT+    K+C 
Sbjct: 90  AVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSC- 148

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                                G +  +S  +Q+    G V K       GS+ D     A
Sbjct: 149 ---------------------GALGERSLALQL---LGMVQKF------GSQDDSDVAAA 178

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+D +++CG ++ A  LF   K+      N+M+ G+ +    + A +LF+ M ++D ++W
Sbjct: 179 LVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSW 238

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + ++   ++ G  +EAL++  +MQ   ++      +  L ACA L +L  G  +H  V R
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           N  C+D  + +ALV++YAKCG    A  VF  +  +    W  +I G   HG   +++EL
Sbjct: 299 NLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVEL 358

Query: 385 FFKMQREKMRPDRITFACVLSACA-----------HAGMIDRG-LQALTYMQQMYGI--- 429
           F +M+ E M  D+   A ++S C            H+  +  G +QA+     +  +   
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 430 ---------------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
                          + ++  +  ++    + G +A+A E    M  + N   W A+LGA
Sbjct: 419 CDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK-NVITWNAMLGA 477

Query: 475 CRKHGEVEFGERLGKILLE 493
             +HG  E G R+  ++L 
Sbjct: 478 YIQHGAEEDGLRMYNVMLS 496



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 37/320 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  YL CG +  A+ L  +     N  ++N M++G+ + GR  +A +L
Sbjct: 34  GLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVEL 93

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGA 311
           F  M  +D  +W+ ++ GY +   Y  +LE F  M R     P  F  +  + +C +LG 
Sbjct: 94  FGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGE 153

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK------------------- 352
               + +   V++     D+ +  ALVDM+ +CG +D+A +                   
Sbjct: 154 RSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVG 213

Query: 353 ------------VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                       +F+ M  ++V +WN M+  L+  GR  +A+++   MQ + +R D  T+
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +V+L  + G   EA+ V +S+
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA--SALVELYAKCGCFKEAKGVFNSL 331

Query: 460 PMEPNAAVWEALLGACRKHG 479
               N A W  L+    +HG
Sbjct: 332 HDRNNVA-WTVLIAGFLQHG 350


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 314/583 (53%), Gaps = 46/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+ +   N   W  ++    ++      + L  E+      P+  +  ++F ACS 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             A + G QVH+  VK G              +  F C                   NAL
Sbjct: 432 IVALETGTQVHSLAVKVGC------------QFNSFAC-------------------NAL 460

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y KC ++E A+++F     K+  S+N+ ++   +    +EAR  F+ M  +D+++W+
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWT 520

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            II  Y       EA+  F  M  +   P   +L+ +L  C SLGA   G  IH    + 
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  + ++  AL+ MY KCG  D + ++F+ M+ +++FTWN +I G A HG   +AI+++
Sbjct: 581 GMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMY 639

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
             M+   + P+ +TF  +L+AC+HAG++D G +    M Q YG+ P  EHY C+VDLLGR
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
            G +  AE+ I  MP+EP+  +W ALLGAC+ H   E G+R  + L  +EP N       
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                      +VA++RK+MK++G+   PG S   +   +H F TGD  H Q++EI   L
Sbjct: 760 SNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATL 819

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++   LK  GY P++  VL DIDEE+KE++  YHSEKLA+A+  + T  G  I+++KNL
Sbjct: 820 EELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNL 879

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH+  K +S V KR I +RD  R+HHFRNG CSC DFW
Sbjct: 880 RICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 196/426 (46%), Gaps = 58/426 (13%)

Query: 67  VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG 126
           VSG   +     R      A +VF+++ + ++  WNS++ A   +  P     LY  + G
Sbjct: 34  VSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
                                                  G++   +  +  Y   G V +
Sbjct: 94  ---------------------------------------GNMRTGAILLSGYGRLGRVLE 114

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           AR++ D   + + + WNA+I  Y++ GDI  A+ LF +   ++  S+N+M++G+    + 
Sbjct: 115 ARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQM 174

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +AR LF +M +++ ++W+ +I GY +   + +A ++F +M R+ + P +   +  L+A 
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK-CGRLDMAWKVFEDMKMKEVFTW 365
             LG LD    +     +     D V+GTA++++Y++    LD A K FE M  +  +TW
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC---VLSACAHAGMIDRGLQALTY 422
           + MI  L+  GR D AI ++   +R+ ++    + AC   +++  A  G ID    A   
Sbjct: 295 STMIAALSHGGRIDAAIAVY---ERDPVK----SIACRTALITGLAQCGRID---DARIL 344

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            +Q+   +P V  +  ++    + G + EA+E+   MP   N   W  ++    ++G  E
Sbjct: 345 FEQI--PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSE 401

Query: 483 FGERLG 488
             E LG
Sbjct: 402 --EALG 405



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 51/351 (14%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G ++ A  + +      + C  ALI G  +CG I+ A+ LF+   +    S+NA+I+G+ 
Sbjct: 305 GRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYM 364

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G   EA++LF++M  ++ I+W+ +I GY ++G  +EAL +  E+ R  + P    L+ 
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +  AC+++ AL+ G  +H    +     ++    AL+ MY KC  ++ A +VF  M  K+
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           + +WN+ +  L  +   D+A   F  M    +  D +++  ++SA AHA   ++  +A+ 
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHA---EQSNEAMG 537

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
             + M+          C  +L                    PN+ +   LLG C   G  
Sbjct: 538 AFKTMF----------CEHEL--------------------PNSPILTILLGVCGSLGAS 567

Query: 482 EFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKT 518
           + G+++  + +++   +                C D  ++  LM+ER I T
Sbjct: 568 KIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFDLMEERDIFT 618



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 57/333 (17%)

Query: 156 HAHVVKNGLCGDVHVK--SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           HAH       G++ V   S+ I+     G V +AR++ D   + D+I WN++I  Y   G
Sbjct: 27  HAH-------GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNG 79

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
             + A++L+ +    N  +   ++SG+ R GR  EAR++F+ M +++ + W+A+I  Y +
Sbjct: 80  MPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQ 139

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G    A  +F+ M    +     +L+     C SL  +D                    
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLT---GYCHSLQMVD-------------------- 176

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG---LAMHGRADDAIELFFKMQR 390
                           A  +FE M  + + +W  MI G   +  HG+A D   +F KM R
Sbjct: 177 ----------------ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD---IFCKMHR 217

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR-AGYL 449
           E + PD+  FA  LSA    G +D  L++L  +    G + +V     I+++  R    L
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             A +   SM +E N   W  ++ A    G ++
Sbjct: 277 DTAIKFFESM-IERNEYTWSTMIAALSHGGRID 308



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 142/317 (44%), Gaps = 38/317 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H++ +K G   + +    L+  +   R  N E A +VF+ +   ++  WNS L A ++
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCR--NMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA-----HVVKN--- 162
           ++      + +  M+  D      ++ T+  A +  E   E +         H + N   
Sbjct: 498 NDLLDEARNTFDNMLSRDD----VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 163 -----GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
                G+CG +     G Q++            +  G  S++I  NALI  Y KCG  + 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTV---------AIKLGMDSELIVANALISMYFKCGCAD- 603

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTK 273
           ++ +F   ++++  ++N +I+G+A+ G   EA K++  M       +E+T+  +++  + 
Sbjct: 604 SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSH 663

Query: 274 DGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGI--WIHDH-VKRNSICV 329
            G   E  + F  M +D  + P     +C++      G + QG   +I+D  ++ +++  
Sbjct: 664 AGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDV-QGAEQFIYDMPIEPDTVIW 722

Query: 330 DAVLGTALVDMYAKCGR 346
            A+LG   +   A+ G+
Sbjct: 723 SALLGACKIHKNAEIGK 739


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/673 (33%), Positives = 349/673 (51%), Gaps = 66/673 (9%)

Query: 46  WQ-----HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           WQ      +++ HA I      ++ ++   LV   A S+  +   A   F  +   N   
Sbjct: 43  WQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVD--AYSKHGSLHGAQLAFGRITLHNAHS 100

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN ++ A  ++  P    +L+  M     +PN  T  T   AC+       G +++  + 
Sbjct: 101 WNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIA 160

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY----------- 209
              L  D HV+SS I MY     + +A +  D   + DV+CW A+I  Y           
Sbjct: 161 SEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALE 220

Query: 210 -LKCGDIEGAK----------ELFKSTKDKNTGSY------------------NAMISGF 240
            ++  D+EG K          +   ST D   G                      +++ +
Sbjct: 221 LVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLY 280

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
            + GR ++AR++ + M  +  ++W+A+I  Y ++G   EA+ +F  M  +  +P    L 
Sbjct: 281 GKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLI 340

Query: 301 CVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFE--DM 357
            V+ +CA LG L  G  IH  ++ + S     +L  A++ MY KCG L++A +VFE   +
Sbjct: 341 SVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPL 400

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACAHAGMIDRG 416
           + + V TW AMI   A +G  ++AIELF +M  +    P+R+TF  VL AC+H G +++ 
Sbjct: 401 RTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQA 460

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSMPMEPNAAVWEALLGAC 475
            +    M   +G+ P  +HY C+VDLLGRAG L EAE+++      E +   W A L AC
Sbjct: 461 WEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSAC 520

Query: 476 RKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPG 521
           + +G++E  +R  K + E+EP+N               R  DVA++R  MK  G+K   G
Sbjct: 521 QMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAG 580

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S I++N  +HEF   D SHP+  EIY  L+++  ++K  GY P++  VL D+DEE+K  
Sbjct: 581 RSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQ 640

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSE+LA+A G I+T PG T+RV+KNLRVC DCH+ATK IS++  R IIVRD  R+H
Sbjct: 641 LLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFH 700

Query: 642 HFRNGKCSCNDFW 654
           HF++G CSC D+W
Sbjct: 701 HFKDGVCSCGDYW 713


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/662 (33%), Positives = 347/662 (52%), Gaps = 67/662 (10%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H +++KSG     +V  ++V  ++ S       A  VF+S+   N   WNS++   + 
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLM--VSDAKAVFDSMENRNAVSWNSMIAGFVT 271

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +        L+  M     K  +  + TV K C+  +      Q+H  V+KNG   D+++
Sbjct: 272 NGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNI 331

Query: 171 KSSGIQMYACFGCVNKARQILDDGSK--------SDVICWNALIDGYLKCGDIEGAKELF 222
           K++ +  Y+      K  +I DD  K         +V+ W A+I GY++ G  + A  LF
Sbjct: 332 KTALMVAYS------KCSEI-DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 223 -----------------------------------KSTKDKNTGSYNAMISGFARFGRFE 247
                                              K+  + +     A+   +++ G   
Sbjct: 385 CQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDAN 444

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA K+F  +++KD + WSA++ GY + G  + A+++F ++ ++ ++P +F  S VL ACA
Sbjct: 445 EAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504

Query: 308 S-LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           +   +++QG   H    ++       + +ALV MYAK G ++ A +VF+    +++ +WN
Sbjct: 505 APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWN 564

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +MI G A HG    ++++F +M+ + +  D ITF  V+SAC HAG+++ G +    M + 
Sbjct: 565 SMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKD 624

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           Y I P +EHY C+VDL  RAG L +A ++I+ MP    A +W  LL ACR H  V+ GE 
Sbjct: 625 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 684

Query: 487 LGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             + L+ ++PQ+                  + AK+RKLM  + +K   G S I+V     
Sbjct: 685 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 744

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F  GD SHPQ   IYL L+++  +LK  GY P++  VL D++EE KE     HSE+LAI
Sbjct: 745 SFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAI 804

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG I T PG  I+++KNLRVC DCH+  KLISK+  RDI+VRD  R+HHF+ G CSC D
Sbjct: 805 AFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGD 864

Query: 653 FW 654
           +W
Sbjct: 865 YW 866



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 233/496 (46%), Gaps = 52/496 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H   +K G  +D  V  +LV  +  +   + E   +VF+ +   NV  W S+L    
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+S+M     KPN FT+  V    +   A ++GVQVH  V+K+GL   + 
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------DIEG 217
           V +S + MY+    V+ A+ + D     + + WN++I G++  G             +EG
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 218 AK---------------------------ELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            K                           ++ K+  D +     A++  +++    ++A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 251 KLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           KLF  M+  ++ ++W+AII GY ++G    A+ +F +M+R+ ++P  F  S +L A A++
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV 409

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
                   IH  V + +      +GTAL D Y+K G  + A K+FE +  K++  W+AM+
Sbjct: 410 SPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAML 465

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH-AGMIDRGLQALTYMQQMYG 428
            G A  G  + A+++F ++ +E + P+  TF+ VL+ACA     +++G Q         G
Sbjct: 466 SGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCSIKSG 524

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
               +     +V +  + G +  A EV     ++ +   W +++    +HG    G++  
Sbjct: 525 FSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHG---CGKKSL 580

Query: 489 KILLEMEPQNRRCDDV 504
           KI  EM  +N   D +
Sbjct: 581 KIFEEMRSKNLELDGI 596



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 178/384 (46%), Gaps = 46/384 (11%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V K C        G QVH   +K G   DV V +S + MY     V    ++ D+    +
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFE------- 247
           V+ W +L+ GY + G  E A +LF   +      N  ++ A++ G A  G  E       
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 248 ----------------------------EARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                       +A+ +F+ M +++ ++W+++I G+  +G   E
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE 277

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A E+F  M+ + +K  + + + V+  CA++  +     +H  V +N    D  + TAL+ 
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV 337

Query: 340 MYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            Y+KC  +D A+K+F  M  ++ V +W A+I G   +GR D A+ LF +M+RE +RP+  
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHF 397

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T++ +L+  A+A +    + AL  ++  Y   P V     + D   + G   EA ++   
Sbjct: 398 TYSTILT--ANAAVSPSQIHALV-VKTNYENSPSVGT--ALSDSYSKIGDANEAAKIFEL 452

Query: 459 MPMEPNAAVWEALLGACRKHGEVE 482
           +  E +   W A+L    + G++E
Sbjct: 453 ID-EKDIVAWSAMLSGYAQMGDIE 475



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 129/246 (52%), Gaps = 3/246 (1%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           +++LF+E   +     + ++  ++++   KEAL +F  ++R         LSCVL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L     G  +H    +     D  +GT+LVDMY K   ++   +VF++M++K V +W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           + G   +G  + A++LF +MQ E ++P+  TFA VL   A  G +++G+Q  T M    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT-MVIKSG 223

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG-EVEFGERL 487
           +D  +     +V++  ++  +++A+ V  SM    NA  W +++     +G ++E  E  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 488 GKILLE 493
            ++ LE
Sbjct: 283 YRMRLE 288



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 21/263 (7%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           +++   +  +EF+  ++L+        S +  KQ H+  +KSG      VS  LV  +A 
Sbjct: 483 QLAKEGVEPNEFTFSSVLNACAAPT-ASVEQGKQFHSCSIKSGFSNALCVSSALVTMYA- 540

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            +  N E A +VF      ++  WNS++    +H    + + ++ EM   + + +  T+ 
Sbjct: 541 -KRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFI 599

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHV------KSSGIQMYACFGCVNKARQIL 191
            V  AC+      EG +    +VK     D H+       S  + +Y+  G + KA  ++
Sbjct: 600 GVISACTHAGLVNEGQRYFDLMVK-----DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 654

Query: 192 DDGS-KSDVICWNALIDG---YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE 247
           +     +    W  L+     +L     E A E   S + +++ +Y  + + +A  G ++
Sbjct: 655 NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQ 714

Query: 248 E---ARKLFNEMNDKDEITWSAI 267
           E    RKL +    K E  +S I
Sbjct: 715 ERAKVRKLMDMKKVKKEAGYSWI 737


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 314/583 (53%), Gaps = 46/583 (7%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+ +   N   W  ++    ++      + L  E+      P+  +  ++F ACS 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSN 431

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             A + G QVH+  VK G              +  F C                   NAL
Sbjct: 432 IVALETGTQVHSLAVKVGC------------QFNSFAC-------------------NAL 460

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           I  Y KC ++E A+++F     K+  S+N+ ++   +    +EAR  F+ M  +D+++W+
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWT 520

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            II  Y       EA+  F  M  +   P   +L+ +L  C SLGA   G  IH    + 
Sbjct: 521 TIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
            +  + ++  AL+ MY KCG  D + ++F+ M+ +++FTWN +I G A HG   +AI+++
Sbjct: 581 GMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMY 639

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
             M+   + P+ +TF  +L+AC+HAG++D G +    M Q YG+ P  EHY C+VDLLGR
Sbjct: 640 QHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGR 699

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
            G +  AE+ I  MP+EP+  +W ALLGAC+ H   E G+R  + L  +EP N       
Sbjct: 700 TGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVML 759

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                      +VA++RK+MK++G+   PG S   +   +H F TGD  H Q++EI   L
Sbjct: 760 SNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATL 819

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++   LK  GY P++  VL DIDEE+KE++  YHSEKLA+A+  + T  G  I+++KNL
Sbjct: 820 EELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNL 879

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCH+  K +S V KR I +RD  R+HHFRNG CSC DFW
Sbjct: 880 RICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 196/426 (46%), Gaps = 58/426 (13%)

Query: 67  VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG 126
           VSG   +     R      A +VF+++ + ++  WNS++ A   +  P     LY  + G
Sbjct: 34  VSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISG 93

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
                                                  G++   +  +  Y   G V +
Sbjct: 94  ---------------------------------------GNMRTGAILLSGYGRLGRVLE 114

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           AR++ D   + + + WNA+I  Y++ GDI  A+ LF +   ++  S+N+M++G+    + 
Sbjct: 115 ARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQM 174

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +AR LF +M +++ ++W+ +I GY +   + +A ++F +M R+ + P +   +  L+A 
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK-CGRLDMAWKVFEDMKMKEVFTW 365
             LG LD    +     +     D V+GTA++++Y++    LD A K FE M  +  +TW
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC---VLSACAHAGMIDRGLQALTY 422
           + MI  L+  GR D AI ++   +R+ ++    + AC   +++  A  G ID    A   
Sbjct: 295 STMIAALSHGGRIDAAIAVY---ERDPVK----SIACRTALITGLAQCGRID---DARIL 344

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            +Q+   +P V  +  ++    + G + EA+E+   MP   N   W  ++    ++G  E
Sbjct: 345 FEQI--PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSE 401

Query: 483 FGERLG 488
             E LG
Sbjct: 402 --EALG 405



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 51/351 (14%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G ++ A  + +      + C  ALI G  +CG I+ A+ LF+   +    S+NA+I+G+ 
Sbjct: 305 GRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYM 364

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           + G   EA++LF++M  ++ I+W+ +I GY ++G  +EAL +  E+ R  + P    L+ 
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS 424

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +  AC+++ AL+ G  +H    +     ++    AL+ MY KC  ++ A +VF  M  K+
Sbjct: 425 IFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKD 484

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           + +WN+ +  L  +   D+A   F  M    +  D +++  ++SA AHA   ++  +A+ 
Sbjct: 485 IVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHA---EQSNEAMG 537

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
             + M+          C  +L                    PN+ +   LLG C   G  
Sbjct: 538 AFKTMF----------CEHEL--------------------PNSPILTILLGVCGSLGAS 567

Query: 482 EFGERLGKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKT 518
           + G+++  + +++   +                C D  ++  LM+ER I T
Sbjct: 568 KIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFDLMEERDIFT 618



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 57/333 (17%)

Query: 156 HAHVVKNGLCGDVHVK--SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           HAH       G++ V   S+ I+     G V +AR++ D   + D+I WN++I  Y   G
Sbjct: 27  HAH-------GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNG 79

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
             + A++L+ +    N  +   ++SG+ R GR  EAR++F+ M +++ + W+A+I  Y +
Sbjct: 80  MPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQ 139

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G    A  +F+ M    +     +L+     C SL  +D                    
Sbjct: 140 NGDITMARRLFDAMPSRDVSSWNSMLT---GYCHSLQMVD-------------------- 176

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG---LAMHGRADDAIELFFKMQR 390
                           A  +FE M  + + +W  MI G   +  HG+A D   +F KM R
Sbjct: 177 ----------------ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD---IFCKMHR 217

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR-AGYL 449
           E + PD+  FA  LSA    G +D  L++L  +    G + +V     I+++  R    L
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             A +   SM +E N   W  ++ A    G ++
Sbjct: 277 DTAIKFFESM-IERNEYTWSTMIAALSHGGRID 308



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 142/317 (44%), Gaps = 38/317 (11%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H++ +K G   + +    L+  +   R  N E A +VF+ +   ++  WNS L A ++
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMYGKCR--NMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHA-----HVVKN--- 162
           ++      + +  M+  D      ++ T+  A +  E   E +         H + N   
Sbjct: 498 NDLLDEARNTFDNMLSRDD----VSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 163 -----GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
                G+CG +     G Q++            +  G  S++I  NALI  Y KCG  + 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTV---------AIKLGMDSELIVANALISMYFKCGCAD- 603

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTK 273
           ++ +F   ++++  ++N +I+G+A+ G   EA K++  M       +E+T+  +++  + 
Sbjct: 604 SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSH 663

Query: 274 DGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGI--WIHDH-VKRNSICV 329
            G   E  + F  M +D  + P     +C++      G + QG   +I+D  ++ +++  
Sbjct: 664 AGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDV-QGAEQFIYDMPIEPDTVIW 722

Query: 330 DAVLGTALVDMYAKCGR 346
            A+LG   +   A+ G+
Sbjct: 723 SALLGACKIHKNAEIGK 739


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 318/588 (54%), Gaps = 63/588 (10%)

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
           +S P++ TY  +   C    +  +G++VH H++ NG   D  + +  I MY+  G V+ A
Sbjct: 72  ESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYA 131

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------KSTKDKNTGSY-------- 233
           R++ D   K  +  WNAL       G  E    L+          D+ T +Y        
Sbjct: 132 RKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS 191

Query: 234 -----------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITW 264
                                          ++  +ARFG  + A  +FN M  ++ ++W
Sbjct: 192 ECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSW 251

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           SA+I  Y K+G   EAL  F EM  +     P    +  VL ACASL AL+QG  IH ++
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYI 311

Query: 323 KRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            R  +  D++L   +ALV MY +CG+LD+  +VF+ M  ++V +WN++I    +HG    
Sbjct: 312 LRRGL--DSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRK 369

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AI++F +M      P  +TF  VL AC+H G+++ G +    M + +GI P+VEHY C+V
Sbjct: 370 AIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMV 429

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRA  L EA +++  M  EP   VW +LLG+CR HG VE  ER  + L  +EP+N  
Sbjct: 430 DLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG 489

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                       +  D+V +++KL++ RG++  PG   ++V   ++ F + D  +P +++
Sbjct: 490 NYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQ 549

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I+  L K+ E +K +GY P +  VL++++ EEKE     HSEKLA+AFG INT  G  IR
Sbjct: 550 IHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + KNLR+CEDCH  TK ISK  +++I+VRD  R+H F+NG CSC D+W
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 195/403 (48%), Gaps = 50/403 (12%)

Query: 27  SEFSQKTI-LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           S  SQ+T  L IL     +S     + H  IL +G  QD +++  L+  +++    + + 
Sbjct: 73  SSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSD--LGSVDY 130

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+   K  ++VWN++ RA         V+ LY +M  +  + ++FTY  V KAC  
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190

Query: 146 TE--AD--KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           +E  AD   +G ++HAH+ + G    V++ ++ + MYA FGCV+ A  + +     +V+ 
Sbjct: 191 SECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVS 250

Query: 202 WNALIDGYLKCGD----IEGAKELFKSTKDKNTGSY------------------------ 233
           W+A+I  Y K G     +   +E+   TKD +  S                         
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGY 310

Query: 234 -------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                        +A+++ + R G+ +  +++F+ M+D+D ++W+++I  Y   GY ++A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVD 339
           +++F EM  +   P       VL AC+  G +++G  + + + R+      V   A +VD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430

Query: 340 MYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDA 381
           +  +  RLD A K+ +DM+ +     W +++G   +HG  + A
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 10/224 (4%)

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
           +I+ + +I    K+G  K+AL V ++      +  + ++ C    C    +L  G+ +H 
Sbjct: 46  KISNNQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLILC----CGHRSSLSDGLRVHR 101

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           H+  N    D  L T L+ MY+  G +D A KVF+  + + ++ WNA+   L + G  ++
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 381 AIELFFKMQREKMRPDRITFACVLSACA----HAGMIDRGLQALTYMQQMYGIDPEVEHY 436
            + L++KM R  +  DR T+  VL AC      A  + +G +   ++ +  G +  V   
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRR-GYNSHVYIM 220

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             +VD+  R G +  A  V + MP+  N   W A++    K+G+
Sbjct: 221 TTLVDMYARFGCVDYASYVFNGMPVR-NVVSWSAMIACYAKNGK 263


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/558 (35%), Positives = 314/558 (56%), Gaps = 22/558 (3%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R    E A  +FNS  + +V  WN+++   ++  +      L+  M G D          
Sbjct: 174 RNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSG 233

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
             +   + EA +        +       DV   ++ +  YA  G + +AR++ D   + +
Sbjct: 234 YARRGDMVEARR--------LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERN 285

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + WNA++  Y++   ++ AKELF     +N  S+N M++G+A+ G  EEA+ +F+ M  
Sbjct: 286 AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           KD ++W+A++  Y++ G  +E L++F EM R      +   +CVL+ CA + AL+ G+ +
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  + R    V   +G AL+ MY KCG ++ A   FE+M+ ++V +WN MI G A HG  
Sbjct: 406 HGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFG 465

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+E+F  M+    +PD IT   VL+AC+H+G++++G+     M   +G+  + EHY C
Sbjct: 466 KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTC 525

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLLGRAG LAEA +++  MP EP++ +W ALLGA R H   E G    + + E+EP+N
Sbjct: 526 MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN 585

Query: 499 R--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                          +  D  KMR +M+ERG+K  PG S I+V   +H F  GD  HP+ 
Sbjct: 586 AGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEK 645

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           ++IY  L+ +  ++K  GY   +  VL D++EEEKE   KYHSEKLA+A+G +N  PG  
Sbjct: 646 EKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRP 705

Query: 605 IRVIKNLRVCEDCHSATK 622
           IRVIKNLRVC DCH+A K
Sbjct: 706 IRVIKNLRVCGDCHNAFK 723



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 206/441 (46%), Gaps = 38/441 (8%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
           L    AN R     LA  +F ++ +P+ + +N++L A    +       L+ EM   DS 
Sbjct: 76  LAGYSANGRLP---LAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDS- 131

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
               TY  +      + A+   V +  H        D    +  +  Y   G V +AR +
Sbjct: 132 ---VTYNVMIS----SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL 184

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            +  ++ DVI WNAL+ GY++ G +  A+ELF     ++  S+N M+SG+AR G   EAR
Sbjct: 185 FNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASL 309
           +LF+    +D  TW+A++ GY ++G  +EA  VF+ M +R+ +       + ++AA    
Sbjct: 245 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQR 299

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             +D+   + + +     C +      ++  YA+ G L+ A  VF+ M  K+  +W AM+
Sbjct: 300 RMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 355

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL-TYMQQMYG 428
              +  G +++ ++LF +M R     +R  FACVLS CA    ++ G+Q     ++  YG
Sbjct: 356 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 415

Query: 429 IDPEVEHYGCIVD-----LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
           +       GC V      +  + G + +A      M  E +   W  ++    +HG   F
Sbjct: 416 V-------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG---F 464

Query: 484 GERLGKILLEMEPQNRRCDDV 504
           G+   +I   M   + + DD+
Sbjct: 465 GKEALEIFDMMRTTSTKPDDI 485



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 43/326 (13%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241
           G V  A ++     +     +NA++ GY   G +  A  LF++    +  SYN ++   A
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                 +AR LF+EM  +D +T++ +I  +   G    A   F+      + P K  +S 
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD------LAPEKDAVSW 165

Query: 302 --VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +LAA    G +++   + +    +    D +   AL+  Y + G++  A ++F+ M  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPG 221

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +WN M+ G A  G   +A  LF       +R D  T+  V+S  A  GM++   + 
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLF---DAAPVR-DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 420 LTYM------------------------QQMYGIDP--EVEHYGCIVDLLGRAGYLAEAE 453
              M                        ++++ + P   V  +  ++    +AG L EA+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 454 EVISSMPMEPNAAVWEALLGACRKHG 479
            V  +MP + +A  W A+L A  + G
Sbjct: 338 AVFDTMP-QKDAVSWAAMLAAYSQGG 362



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 130/282 (46%), Gaps = 24/282 (8%)

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + +VI  N  I  +++ G +  A+ LF +   ++T +YNAM++G++  GR   A  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQ 314
           +   D  +++ ++          +A  +F+EM  RD +       + ++++ A+ G +  
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV-----TYNVMISSHANHGLVSL 149

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
                D         DAV    ++  Y + GR++ A  +F      +V +WNA++ G   
Sbjct: 150 ARHYFDLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP--E 432
            G+  +A ELF +M       D +++  ++S  A  G        +   ++++   P  +
Sbjct: 206 WGKMSEARELFDRMPGR----DVVSWNIMVSGYARRG-------DMVEARRLFDAAPVRD 254

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           V  +  +V    + G L EA  V  +MP E NA  W A++ A
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAA 295


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 338/632 (53%), Gaps = 34/632 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL---- 105
           KQ H V   SG   D +V G+L   H   R      A KVF+ + + +V   +++L    
Sbjct: 136 KQIHCVACVSGLDMDAFVQGSLF--HMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYA 193

Query: 106 -RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            + CLE      V+ + SEM     +PN  ++  +    + +   KE V +   +   G 
Sbjct: 194 RKGCLE-----EVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGF 248

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           C D    SS +        +N  RQI    +  G   D    +A++D Y K G + G  +
Sbjct: 249 CPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIK 308

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGY 276
           LF   +   TG  NA I+G +R G  ++A ++F    ++    + ++W++II G  ++G 
Sbjct: 309 LFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGK 368

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EALE+F EMQ   +KP +  +  +L AC ++ AL  G   H    R  +  D  +G+A
Sbjct: 369 DIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSA 428

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAKCGR+ M+  VF  M  K +  WN+++ G +MHG+A + + +F  + R +++PD
Sbjct: 429 LIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD 488

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I+F  +LSAC   G+ D G +    M + YGI P +EHY C+V+LLGRAG L EA ++I
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------D 502
             +P EP++ VW ALL +CR    V+  E   + L  +EP+N                  
Sbjct: 549 KEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWT 608

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +V  +R  M+  G+K NPG S I V   ++     D SHPQ+ +I   + +I E+++  G
Sbjct: 609 EVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSG 668

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + PN    L D++E+E+E     HSEKLA+ FG +NT  G  ++VIKNLR+C DCH+  K
Sbjct: 669 HRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIK 728

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            IS    R+I +RD  R+HHF++G CSC DFW
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 222/501 (44%), Gaps = 77/501 (15%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQ---HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           +P  E   +TIL IL +             QAHA ILKSG   D Y+S  L+  ++N  +
Sbjct: 6   LPLIEKIPQTILGILESSSSLWSSSLSKTTQAHARILKSGAQNDGYISAKLIASYSN--Y 63

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
           + F  A  +  S+  P V+ ++S++ A  +     + I ++S M      P+    P +F
Sbjct: 64  NCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLF 123

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           K C+   A K G Q+H     +GL  D  V+ S   MY   G +  AR++ D  S+ DV+
Sbjct: 124 KVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVV 183

Query: 201 CWNALIDGYLKCGDIEGA----KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
             +AL+ GY + G +E       E+ KS  + N  S+N ++SGF R              
Sbjct: 184 TCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNR-------------- 229

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
                        GY K     EA+ +F +M      P +  +S VL +      L+ G 
Sbjct: 230 ------------SGYHK-----EAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE--------------- 361
            IH +V +  +  D  + +A++DMY K G +    K+F++ +M E               
Sbjct: 273 QIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNG 332

Query: 362 --------------------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
                               V +W ++I G A +G+  +A+ELF +MQ   ++P+R+T  
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            +L AC +   +  G     +  +++ +D +V     ++D+  + G +  ++ V + MP 
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVFNMMPT 451

Query: 462 EPNAAVWEALLGACRKHGEVE 482
           + N   W +L+     HG+ +
Sbjct: 452 K-NLVCWNSLMNGYSMHGKAK 471


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/659 (32%), Positives = 333/659 (50%), Gaps = 57/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            +Q HA   K G   ++ + G L+  +A  + ++ E AL  F      NV +WN +L A  
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLYA--KCADIETALDYFLETEVENVVLWNVMLVAYG 466

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLCGDV 168
              ++      ++ +M   +  PN++TYP++ K C I   D E G Q+H+ ++K     + 
Sbjct: 467  LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC-IRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +V S  I MYA  G ++ A  IL   +  DV+ W  +I GY +    + A   F+   D+
Sbjct: 526  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 229  NTGS---------------------------------------YNAMISGFARFGRFEEA 249
               S                                        NA+++ ++R G+ EE+
Sbjct: 586  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query: 250  RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
               F +    D I W+A++ G+ + G  +EAL VF  M R+ I    F     + A +  
Sbjct: 646  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
              + QG  +H  + +     +  +  AL+ MYAKCG +  A K F ++  K   +WNA+I
Sbjct: 706  ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
               + HG   +A++ F +M    +RP+ +T   VLSAC+H G++D+G+     M   YG+
Sbjct: 766  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             P+ EHY C+VD+L RAG L+ A+E I  MP++P+A VW  LL AC  H  +E GE    
Sbjct: 826  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 885

Query: 490  ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             LLE+EP++              ++ D     R+ MKE+G+K  PG S I+V   IH F 
Sbjct: 886  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 945

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD +HP   EI+   + + ++    GY  +   +L ++  E+K+     HSEKLAI+FG
Sbjct: 946  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFG 1005

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             ++      I V+KNLRVC DCH+  K +SKV  R+IIVRD  R+HHF  G CSC D+W
Sbjct: 1006 LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 211/484 (43%), Gaps = 55/484 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++Q HA IL  G      V   L+  ++ + F   +LA +VF+ +   +   W +++   
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGF--VDLARRVFDGLRLKDHSSWVAMISGL 263

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            ++      I L+ +M  +   P  + + +V  AC   E+ + G Q+H  V+K G   D 
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 323

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--- 225
           +V ++ + +Y   G +  A  I  + S+ D + +N LI+G  +CG  E A ELFK     
Sbjct: 324 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 383

Query: 226 ---KDKNT-----------------------------GSYN----AMISGFARFGRFEEA 249
               D NT                              S N    A+++ +A+    E A
Sbjct: 384 GLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETA 443

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
              F E   ++ + W+ ++  Y      + +  +F +MQ ++I P ++    +L  C  L
Sbjct: 444 LDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 503

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G L+ G  IH  + + +  ++A + + L+DMYAK G+LD AW +      K+V +W  MI
Sbjct: 504 GDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI 563

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY-- 427
            G   +   D A+  F +M    +R D +     +SACA       GLQAL   QQ++  
Sbjct: 564 AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA-------GLQALKEGQQIHAQ 616

Query: 428 ----GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
               G   ++     +V L  R G + E+           N A W AL+   ++ G  E 
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 675

Query: 484 GERL 487
             R+
Sbjct: 676 ALRV 679



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 182/435 (41%), Gaps = 94/435 (21%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + +  +F WN +++     N    V  L+  MV  +  PN+ T+  V +AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-- 196

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G  V   VV+              Q++A         +IL  G +   +  N L
Sbjct: 197 -----RGGSVAFDVVE--------------QIHA---------RILYQGLRDSTVVCNPL 228

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           ID Y                               +R G  + AR++F+ +  KD  +W 
Sbjct: 229 IDLY-------------------------------SRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           A+I G +K+    EA+ +F +M    I P  +  S VL+AC  + +L+ G  +H  V + 
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
               D  +  ALV +Y   G L  A  +F +M  ++  T+N +I GL+  G  + A+ELF
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM------------------- 426
            +M  + + PD  T A ++ AC+  G + RG Q   Y  ++                   
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 437

Query: 427 --------YGIDPEVEH---YGCIVDLLGRAGYLAEAEEVISSMPME---PNAAVWEALL 472
                   Y ++ EVE+   +  ++   G    L  +  +   M +E   PN   + ++L
Sbjct: 438 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 497

Query: 473 GACRKHGEVEFGERL 487
             C + G++E GE++
Sbjct: 498 KTCIRLGDLELGEQI 512



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 39/283 (13%)

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           + R +F  +      +++AI    ++D  ++E  +  + ++   I+P    L  +L  C 
Sbjct: 38  KTRTVFPTLCGTRRASFAAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCL 95

Query: 308 SL-GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
              G+LD+G  +H  + +  +  +  L   L D Y   G L  A+KVF++M  + +FTWN
Sbjct: 96  KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            MI  LA      +   LF +M  E + P+  TF+ VL AC   G +   +    + + +
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAFDVVEQIHARIL 214

Query: 427 Y-GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME----------------------- 462
           Y G+         ++DL  R G++  A  V   + ++                       
Sbjct: 215 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 274

Query: 463 -----------PNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
                      P    + ++L AC+K   +E GE+L  ++L++
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 329/614 (53%), Gaps = 61/614 (9%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
            H+ QAHA +   G      +   L         ++    L +F      + F  N +LR
Sbjct: 41  HHVLQAHARLAVLGLATARALPQLLAALPRLPLAASHSYPLSLFRCASCASAFASNHLLR 100

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF--------KACSITEADK-EGVQVHA 157
             L H  P R+             P+ FT+             A +++ A +  G  VHA
Sbjct: 101 -VLPHPLPLRLFPRLPR-----RNPHSFTFLLASLSNHLDADPAVAVSIASRLMGAHVHA 154

Query: 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
             VK G  GD++V+                               NALI  Y  CGD+  
Sbjct: 155 LAVKAGAAGDLYVR-------------------------------NALIHFYGVCGDVAA 183

Query: 218 AKELFKSTK-DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
            +++F      ++  ++NA+++G+ R G    AR++F+ M  +DE++WS ++ GY K+G 
Sbjct: 184 MRKVFDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGE 243

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            + AL VF  M    +K  +  +   L+A A LG L+QG ++H+ +KR  + +   LG A
Sbjct: 244 LEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAA 303

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMY+KCG +  A +VF+ M  ++VF WN+MI GLA HG   DA++LF K   E   P 
Sbjct: 304 LVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 363

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  VL+AC+  G++D G      M + YGI+ E+EHYGC+VDLL RAG + EA E+I
Sbjct: 364 NITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELI 423

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCD 502
             M + P+  +W  +L AC++HG V+ G  +G  L+E++P +              ++ D
Sbjct: 424 EGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWD 483

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +V K+RKLM  RG   + G S+++ +G++H+F  GD  H    +IY ML  I  +L   G
Sbjct: 484 EVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHKDSVQIYNMLCMIDRRLAEAG 543

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P+ S VL DI +EEK  A K HSE+LAIA+GFI  + G+ IR++KNL VC DCH  +K
Sbjct: 544 YVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSK 603

Query: 623 LISKVFKRDIIVRD 636
           +++KVF R+IIVRD
Sbjct: 604 MVTKVFGREIIVRD 617


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/634 (33%), Positives = 335/634 (52%), Gaps = 80/634 (12%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSG--TLVKCHANSRFSNFELALKVFNSVHK 95
           L  +CH +    KQ HA  +K   F     S    L KC  +   ++   A  +F  +  
Sbjct: 36  LLKRCH-NIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDD 94

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQV 155
           P  F +N+++R  +        +  Y+EM+   ++P+ FTYP + KAC+  ++ +E    
Sbjct: 95  PCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE---- 150

Query: 156 HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI 215
                             G Q++          Q+   G ++DV   N+LI+ Y +C   
Sbjct: 151 ------------------GKQIHG---------QVFKLGLEADVFVQNSLINMYGRC--- 180

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                                       G  E +  +F ++  K   +WS+++      G
Sbjct: 181 ----------------------------GEMELSSAVFEKLESKTAASWSSMVSARAGMG 212

Query: 276 YYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
            + E L +F  M     +K  +  +   L ACA+ GAL+ G+ IH  + RN   ++ ++ 
Sbjct: 213 MWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQ 272

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           T+LVDMY KCG LD A  +F+ M+ +   T++AMI GLA+HG  + A+ +F KM +E + 
Sbjct: 273 TSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLE 332

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD + +  VL+AC+H+G++  G +    M +   ++P  EHYGC+VDLLGRAG L EA E
Sbjct: 333 PDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALE 392

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RR 500
            I S+P+E N  +W   L  CR    +E G+   + LL++   N              + 
Sbjct: 393 TIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQM 452

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            DDVA+ R  +  +G+K  PG S++++ G  H F + D SHP+ KEIY ML ++  +LK 
Sbjct: 453 WDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKF 512

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
           EGYSP+ +Q+L ++DEEEK+   K HS+K+AIAFG + T PG+ I++ +NLR+C DCH+ 
Sbjct: 513 EGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTY 572

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           TK IS +++R+I+VRDR R+H F+ G CSC D+W
Sbjct: 573 TKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/659 (32%), Positives = 333/659 (50%), Gaps = 57/659 (8%)

Query: 50   KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            +Q HA   K G   ++ + G L+  +A  + ++ E AL  F      NV +WN +L A  
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLYA--KCADIETALDYFLETEVENVVLWNVMLVAYG 426

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE-GVQVHAHVVKNGLCGDV 168
              ++      ++ +M   +  PN++TYP++ K C I   D E G Q+H+ ++K     + 
Sbjct: 427  LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC-IRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +V S  I MYA  G ++ A  IL   +  DV+ W  +I GY +    + A   F+   D+
Sbjct: 486  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 229  NTGS---------------------------------------YNAMISGFARFGRFEEA 249
               S                                        NA+++ ++R G+ EE+
Sbjct: 546  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605

Query: 250  RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
               F +    D I W+A++ G+ + G  +EAL VF  M R+ I    F     + A +  
Sbjct: 606  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 665

Query: 310  GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
              + QG  +H  + +     +  +  AL+ MYAKCG +  A K F ++  K   +WNA+I
Sbjct: 666  ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 725

Query: 370  GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
               + HG   +A++ F +M    +RP+ +T   VLSAC+H G++D+G+     M   YG+
Sbjct: 726  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 785

Query: 430  DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             P+ EHY C+VD+L RAG L+ A+E I  MP++P+A VW  LL AC  H  +E GE    
Sbjct: 786  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 845

Query: 490  ILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
             LLE+EP++              ++ D     R+ MKE+G+K  PG S I+V   IH F 
Sbjct: 846  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 905

Query: 536  TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
             GD +HP   EI+   + + ++    GY  +   +L ++  E+K+     HSEKLAI+FG
Sbjct: 906  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFG 965

Query: 596  FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             ++      I V+KNLRVC DCH+  K +SKV  R+IIVRD  R+HHF  G CSC D+W
Sbjct: 966  LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 211/484 (43%), Gaps = 55/484 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           ++Q HA IL  G      V   L+  ++ + F   +LA +VF+ +   +   W +++   
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGF--VDLARRVFDGLRLKDHSSWVAMISGL 223

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            ++      I L+ +M  +   P  + + +V  AC   E+ + G Q+H  V+K G   D 
Sbjct: 224 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 283

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--- 225
           +V ++ + +Y   G +  A  I  + S+ D + +N LI+G  +CG  E A ELFK     
Sbjct: 284 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 343

Query: 226 ---KDKNT-----------------------------GSYN----AMISGFARFGRFEEA 249
               D NT                              S N    A+++ +A+    E A
Sbjct: 344 GLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETA 403

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
              F E   ++ + W+ ++  Y      + +  +F +MQ ++I P ++    +L  C  L
Sbjct: 404 LDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 463

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G L+ G  IH  + + +  ++A + + L+DMYAK G+LD AW +      K+V +W  MI
Sbjct: 464 GDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI 523

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY-- 427
            G   +   D A+  F +M    +R D +     +SACA       GLQAL   QQ++  
Sbjct: 524 AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA-------GLQALKEGQQIHAQ 576

Query: 428 ----GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
               G   ++     +V L  R G + E+           N A W AL+   ++ G  E 
Sbjct: 577 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 635

Query: 484 GERL 487
             R+
Sbjct: 636 ALRV 639



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 182/435 (41%), Gaps = 94/435 (21%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+ + +  +F WN +++     N    V  L+  MV  +  PN+ T+  V +AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-- 156

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
                 G  V   VV+              Q++A         +IL  G +   +  N L
Sbjct: 157 -----RGGSVAFDVVE--------------QIHA---------RILYQGLRDSTVVCNPL 188

Query: 206 IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
           ID Y                               +R G  + AR++F+ +  KD  +W 
Sbjct: 189 IDLY-------------------------------SRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           A+I G +K+    EA+ +F +M    I P  +  S VL+AC  + +L+ G  +H  V + 
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 277

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
               D  +  ALV +Y   G L  A  +F +M  ++  T+N +I GL+  G  + A+ELF
Sbjct: 278 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 337

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM------------------- 426
            +M  + + PD  T A ++ AC+  G + RG Q   Y  ++                   
Sbjct: 338 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 397

Query: 427 --------YGIDPEVEH---YGCIVDLLGRAGYLAEAEEVISSMPME---PNAAVWEALL 472
                   Y ++ EVE+   +  ++   G    L  +  +   M +E   PN   + ++L
Sbjct: 398 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 457

Query: 473 GACRKHGEVEFGERL 487
             C + G++E GE++
Sbjct: 458 KTCIRLGDLELGEQI 472



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 25/303 (8%)

Query: 205 LIDGYLKC-GDI-EGAK---ELFKSTKDKNTGSYNAMISGFARF-GRFEEARKLFNEMND 258
           L++G LK  G + EG K   ++ K   D N G  +  +  F  F G    A K+F+EM +
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSN-GCLSEKLFDFYLFKGDLYGAFKVFDEMPE 108

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC-ASLGALDQGIW 317
           +   TW+ +I          E   +F  M  + + P +   S VL AC     A D    
Sbjct: 109 RTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQ 168

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH  +    +    V+   L+D+Y++ G +D+A +VF+ +++K+  +W AMI GL+ +  
Sbjct: 169 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV---- 433
             +AI LF  M    + P    F+ VLSAC       + +++L   +Q++G+  ++    
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSAC-------KKIESLEIGEQLHGLVLKLGFSS 281

Query: 434 EHYGC--IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           + Y C  +V L    G L  AE + S+M  + +A  +  L+    + G   +GE+  ++ 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCG---YGEKAMELF 337

Query: 492 LEM 494
             M
Sbjct: 338 KRM 340



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 39/268 (14%)

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-GALDQGIWIHDH 321
           +++AI    ++D  ++E  +  + ++   I+P    L  +L  C    G+LD+G  +H  
Sbjct: 13  SFAAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ 70

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + +  +  +  L   L D Y   G L  A+KVF++M  + +FTWN MI  LA      + 
Sbjct: 71  ILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV 130

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY-GIDPEVEHYGCIV 440
             LF +M  E + P+  TF+ VL AC   G +   +    + + +Y G+         ++
Sbjct: 131 FGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLI 189

Query: 441 DLLGRAGYLAEAEEVISSMPME----------------------------------PNAA 466
           DL  R G++  A  V   + ++                                  P   
Sbjct: 190 DLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 249

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEM 494
            + ++L AC+K   +E GE+L  ++L++
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKL 277


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/665 (32%), Positives = 350/665 (52%), Gaps = 73/665 (10%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA+++K G   +  V  +L+   + S       A  VF+++   +   WNS++   + 
Sbjct: 224 QIHALVVKLGFETERLVCNSLISMLSKSGM--LRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +       ++ M    +KP   T+ +V K+C+  +       +H   +K+GL  + +V
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV 341

Query: 171 KSSGIQMYACFGCVNKARQILDDGS-------KSDVICWNALIDGYLKCGDIEGAKELF- 222
                 + A    + K ++I D  S          V+ W A+I GYL+ GD + A  LF 
Sbjct: 342 ------LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFS 395

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K+  +K++    A++  F + G   +
Sbjct: 396 LMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISD 455

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC-A 307
           A K+F  +  KD I WSA++ GY + G  +EA ++F+++ R+ IKP +F    ++ AC A
Sbjct: 456 AVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTA 515

Query: 308 SLGALDQGIWIHDHVKR----NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
              +++QG   H +  +    N++CV     ++LV +YAK G ++ A ++F+  K +++ 
Sbjct: 516 PTASVEQGKQFHAYAIKLRLNNALCVS----SSLVTLYAKRGNIESAHEIFKRQKERDLV 571

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WN+MI G A HG+A  A+E+F +MQ+  +  D ITF  V+SACAHAG++ +G      M
Sbjct: 572 SWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIM 631

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              + I+P +EHY C++DL  RAG L +A ++I+ MP  P A VW  +L A R H  +E 
Sbjct: 632 INDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIEL 691

Query: 484 GERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           G+   + ++ +EPQ+                  +   +RKLM +R +K  PG S I+V  
Sbjct: 692 GKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKN 751

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
             + F  GD SHP    IY  L ++  +L+  GY P+++ V  DI++E+KET   +HSE+
Sbjct: 752 KTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSER 811

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG I T P   ++++KNLRVC DCHS  KL+S V KR I+VRD  R+HHF+ G CS
Sbjct: 812 LAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCS 871

Query: 650 CNDFW 654
           C D+W
Sbjct: 872 CGDYW 876



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 229/500 (45%), Gaps = 60/500 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H   +K G      V  +LV  +  ++  N     +VF+ +   +V  WNS+L    
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMY--TKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYS 179

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +    +V  L+  M     +P+ +T  TV  A +   A   G+Q+HA VVK G   +  
Sbjct: 180 WNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERL 239

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-DIE-----------G 217
           V +S I M +  G +  AR + D+    D + WN++I G++  G D+E           G
Sbjct: 240 VCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAG 299

Query: 218 AK---------------------------ELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
           AK                           +  KS    N     A++    +    ++A 
Sbjct: 300 AKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAF 359

Query: 251 KLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            LF+ M+  +  ++W+A+I GY ++G   +A+ +F+ M+R+ +KP  F  S +L    ++
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAV 419

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
              +    IH  V + +    + +GTAL+D + K G +  A KVFE ++ K+V  W+AM+
Sbjct: 420 FISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAML 475

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC-AHAGMIDRGLQALTYMQQMYG 428
            G A  G  ++A ++F ++ RE ++P+  TF  +++AC A    +++G Q        Y 
Sbjct: 476 AGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYA 530

Query: 429 IDPEVEHYGCI----VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           I   + +  C+    V L  + G +  A E+      E +   W +++    +HG+    
Sbjct: 531 IKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQ---A 586

Query: 485 ERLGKILLEMEPQNRRCDDV 504
           ++  ++  EM+ +N   D +
Sbjct: 587 KKALEVFEEMQKRNLEVDAI 606



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 196/472 (41%), Gaps = 92/472 (19%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANS-------RFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           IL+   +Q H  +  L++ H  +       R S+   A ++F+     ++   N +L   
Sbjct: 18  ILRIRRYQLHCHANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRY 77

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
              ++    + L+  +      P+ +T   V   C+ +     G QVH   VK   CG V
Sbjct: 78  SRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK---CGLV 134

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
           H  S G                            N+L+D Y K G++             
Sbjct: 135 HHLSVG----------------------------NSLVDMYTKTGNVR------------ 154

Query: 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                              + R++F+EM D+D ++W++++ GY+ + +  +  E+F  MQ
Sbjct: 155 -------------------DGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQ 195

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            +  +P  + +S V+AA A+ GA+  G+ IH  V +     + ++  +L+ M +K G L 
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLR 255

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  VF++M+ K+  +WN+MI G  ++G+  +A E F  MQ    +P   TFA V+ +C 
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC- 314

Query: 409 HAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
            A + + GL  + + + +  G+         ++  L +   + +A  + S M    +   
Sbjct: 315 -ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVS 373

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
           W A++    ++G+                     D    +  LM+  G+K N
Sbjct: 374 WTAMISGYLQNGDT--------------------DQAVNLFSLMRREGVKPN 405



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 27/295 (9%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQH---LKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           +  + F+  TIL +         QH   + + HA ++K+ + +   V   L+   A  + 
Sbjct: 402 VKPNHFTYSTILTV---------QHAVFISEIHAEVIKTNYEKSSSVGTALLD--AFVKI 450

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            N   A+KVF  +   +V  W+++L    +  E      ++ ++     KPN+FT+ ++ 
Sbjct: 451 GNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSII 510

Query: 141 KACSITEADKE-GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            AC+   A  E G Q HA+ +K  L   + V SS + +YA  G +  A +I     + D+
Sbjct: 511 NACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDL 570

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNE 255
           + WN++I GY + G  + A E+F+  + +N      ++  +IS  A  G   + +  FN 
Sbjct: 571 VSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNI 630

Query: 256 MNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           M +   I      +S +ID Y++ G   +A+++ N M      P   V   VLAA
Sbjct: 631 MINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM---PFPPAATVWRIVLAA 682


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 312/587 (53%), Gaps = 61/587 (10%)

Query: 124 MVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           M+   + PN FT+P   K+C+       G Q+H HV K G   +  V++S I MY     
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 184 VNKARQILDDGSKSD--VICWNALIDGYLKCGDIEGAKELF------------------- 222
           ++ AR++ D+  +S    +C+N+L+ GY     ++    LF                   
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 223 --------------------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                               K   D ++   N +++ + + G  +  RKLF+EM  K  I
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           TW+A+I+GY ++G     LE++ EM+     P    L  VL++CA LGAL  G  +   +
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
           +      +  L  ALV+MYA+CG L  A  +F+ M +K V +W A+IGG  MHG+ + A+
Sbjct: 241 EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAV 300

Query: 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442
            LF +M R  ++PD   F  VLSAC+HAG+ ++GL     M++ YG+ P  EHY C+VDL
Sbjct: 301 GLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDL 360

Query: 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--- 499
           LGRAG L EA E+I SM +  + A+W ALLGAC+ H  VE  E   + ++E+EP N    
Sbjct: 361 LGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYY 420

Query: 500 -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                        + + ++R LM++R +K +PG S ++  G +H F  GD +HPQ  EIY
Sbjct: 421 VLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIY 480

Query: 549 LMLKKIIEKLK-MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
             L ++   +K ++G   N  +       EE   +   HSEKLA+AF  +NT     I +
Sbjct: 481 KKLNELENLVKDLDGCKKNDHE-----RREEYLNSMGVHSEKLAVAFALLNTRKETEIII 535

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           IKNLR+C DCH   KL+SK+  R  +VRD  R+HHF+NG CSC ++W
Sbjct: 536 IKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 182/399 (45%), Gaps = 47/399 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF--NSVHKPNVFVWNSVLRA 107
           KQ H  + K+G   + +V  +L+  +   + S  + A K+F  N   +     +NS+L  
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYG--KCSLIDNARKLFDENPQSRKLTVCYNSLLSG 87

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
              ++    V+ L+ EM  +  + N  T   + + C I      G+ VH   VK GL  D
Sbjct: 88  YALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMD 147

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             V +  + MY   G ++  R++ D+  +  +I WNA+I+GY + G      EL+K  + 
Sbjct: 148 SSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMES 207

Query: 228 K---------------------------------------NTGSYNAMISGFARFGRFEE 248
           K                                       N    NA+++ +AR G  ++
Sbjct: 208 KGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKK 267

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           AR +F+ M  K  ++W+AII GY   G  + A+ +F+EM R  IKP       VL+AC+ 
Sbjct: 268 ARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH 327

Query: 309 LGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWN 366
            G  ++G+     ++R   +   A   + +VD+  + GRL+ A ++ E M+++ +   W 
Sbjct: 328 AGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWG 387

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           A++G   +H R  +  EL F+ Q  ++ P    +  +LS
Sbjct: 388 ALLGACKIH-RNVELAELAFE-QVIELEPTNTGYYVLLS 424



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 33/329 (10%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H   +K G   D  V   L+  +  S     +   K+F+ + +  +  WN+++    ++
Sbjct: 135 VHGFCVKFGLDMDSSVGNCLLTMYVKS--GEIDCGRKLFDEMPRKGLITWNAMINGYAQN 192

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
                V+ LY EM      P+  T   V  +C+   A   G +V   +   G   +  + 
Sbjct: 193 GLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLN 252

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKD 227
           ++ + MYA  G + KAR I D      V+ W A+I GY   G  E A  LF    +    
Sbjct: 253 NALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIK 312

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALE 282
            +  ++ +++S  +  G   +    F  M  K  +      +S ++D   + G   EA E
Sbjct: 313 PDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARE 372

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-------- 334
           +   MQ             V A  A  GAL     IH +V+   +  + V+         
Sbjct: 373 LIESMQ-------------VRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGY 419

Query: 335 -TALVDMYAKCGRLDMAWKVFEDMKMKEV 362
              L ++Y + G L+   +V   M+ +++
Sbjct: 420 YVLLSNVYTEAGNLEGILRVRMLMRKRKL 448


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 322/571 (56%), Gaps = 54/571 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y ++  AC+   +  +   +HAH+  +   G V + +S I +Y   G V  AR++ D   
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 196 KSDVICWNALIDGY-----------LKCGDIEG---------AKELFKSTKDKNTG---- 231
             D+  W +LI GY           L  G + G         A  L  +    ++G    
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 232 ------SYN---------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                  Y+         A++  +AR GR + A  +F+++  K+ ++W+A+I G+ + G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +  L +F EMQR+  +   F  S V +A A +GAL+QG W+H H+ ++   + A +G  
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           ++DMYAK G +  A KVF+ +  K+V TWN+M+   A +G   +A+  F +M++  +  +
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
           +ITF  +L+AC+H G++  G Q    M++ Y ++PE++HY  +VDLLGRAG L +A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MPM+P AAVW ALLG+CR H   + G+     + E++P +               + D
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
             A++RK+MK  G+K  P  S +++   +H F   D +HP+ +EIY   ++I  +++  G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y PN+  VL  +DE+E++   +YHSEK+A+AF  IN   GATIR++KN+R+C DCHSA +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
            ISKVFKR+I+VRD  R+HHF +G CSC D+
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 150/333 (45%), Gaps = 40/333 (12%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF+ +   ++  W S++    +++ P   + L   M+    KPN FT+ ++ KA   
Sbjct: 118 ARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGA 177

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           + +   G Q+HA  VK     DV+V S+ + MYA  G ++ A  + D     + + WNAL
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNAL 237

Query: 206 IDGYLKCGDIE-------------------------------GAKE--------LFKSTK 226
           I G+ + GD E                               GA E        + KS +
Sbjct: 238 IAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGE 297

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
             +    N ++  +A+ G   +ARK+F+ ++ KD +TW++++  + + G  +EA+  F E
Sbjct: 298 RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEE 357

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M++  +   +     +L AC+  G + +G    D +K  ++  +      +VD+  + G 
Sbjct: 358 MRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGL 417

Query: 347 LDMAWKVFEDMKMKEV-FTWNAMIGGLAMHGRA 378
           L+ A      M MK     W A++G   MH  A
Sbjct: 418 LNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA 450



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA+ +K     D YV   L+  +A  R    ++A+ VF+ +   N   WN+++    
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYA--RCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    + +++EM     +   FTY +VF A +   A ++G  VHAH++K+G      
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKST 225
           V ++ + MYA  G +  AR++ D   K DV+ WN+++  + + G     +   +E+ K  
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 362

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFN---EMNDKDEIT-WSAIIDGYTKDGYYKEAL 281
              N  ++ ++++  +  G  +E ++ F+   E N + EI  +  ++D   + G   +AL
Sbjct: 363 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDAL 422

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
               +M    +KP   V   +L +C        G +  DHV       D      L ++Y
Sbjct: 423 VFIFKM---PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELD-PDDTGPPVLLYNIY 478

Query: 342 AKCGRLDMAWKVFEDMKMKEV 362
           A  G+ D A +V + MK   V
Sbjct: 479 ASTGQWDAAARVRKMMKATGV 499


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 331/589 (56%), Gaps = 60/589 (10%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC T + HLKQ  ++++ SG     +    +++    S   +    L +F+ +  P +F+
Sbjct: 17  KCGT-FDHLKQTTSILITSGLAHHTFFLSDILR----SATKDLGYTLLLFDRLATPYIFL 71

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+++R     ++P  V+  YS +      P++ T+P + KA S    ++   Q +AH+V
Sbjct: 72  WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR-NENPFQFYAHIV 130

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K GL  D  V++S +  +A  G V+ +R++  + +K DV+ W ALI+G L+ G    A E
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 221 LFKSTKDKNT---------------------------GSY-------------NAMISGF 240
            F   +                               G Y             +A++  +
Sbjct: 191 CFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMY 250

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
           ++ G  ++A K+FNEM  ++ ++W A+I GY +   YKEAL+VF EM  + I+P +  ++
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVT 310

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
             L ACA LG+LDQG W+H++V R+ + +++ LGTALVDMY+KCG +D A  VFE +  K
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK 370

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +V+ W AMI GLAM G A  ++ LF +M R +++P+ +TF  VLSACAH G++D GL+  
Sbjct: 371 DVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELF 430

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             M   Y ++P V+HYGC+VDLLGRAG L EA + I SMPMEP   VW AL   C  H  
Sbjct: 431 RLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKA 490

Query: 481 VEFGERLGKILLEMEPQN-----------RRC---DDVAKMRKLMKERGIKTNPGSSMID 526
            E GE +G  L++++P +            RC   +  A +R+LMK +G+  +PG S I+
Sbjct: 491 FELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIE 550

Query: 527 VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           VNGVIHEF   D SH +   +Y+ML+ +  +LK+  Y+ +S+ + F ID
Sbjct: 551 VNGVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSNLLTFTID 599


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/613 (33%), Positives = 317/613 (51%), Gaps = 85/613 (13%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
            D +P+   Y T+  AC    A + G +VHAH   +     V + +  + MYA  G +  
Sbjct: 81  TDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVD 140

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF 246
           A+ + D+    D+  WN +I GY K G +E A++LF     ++  S+NA ISG+    + 
Sbjct: 141 AQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQP 200

Query: 247 EEARKLFNEMN----------------------------------------DKDEITWSA 266
            EA +LF  M                                         + DE+ WSA
Sbjct: 201 REALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSA 260

Query: 267 IIDGYTK-------------------------------DGYYKEALEVFNEMQRDKIKPR 295
           ++D Y K                               DG  +E   +F ++ +  ++P 
Sbjct: 261 LLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPN 320

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           ++  + VL ACA   A   G  +H ++        +   +ALV MY+KCG   +A +VF 
Sbjct: 321 EYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFN 380

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
           +M   ++ +W ++I G A +G+ D+A+  F  + +   +PD++T+  VLSAC HAG++D+
Sbjct: 381 EMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDK 440

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           GL+    +++ +G+    +HY C++DLL R+G   EAE +I +MP++P+  +W +LLG C
Sbjct: 441 GLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGC 500

Query: 476 RKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPG 521
           R HG +E  +R  K L E+EP+N                  +VA +RK M   GI   PG
Sbjct: 501 RIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPG 560

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
            S I++   +H F  GD SHP+  +I+  L ++ +K+K EGY P+++ VL D++EE+KE 
Sbjct: 561 KSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQ 620

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSEKLA+ FG I+T PG  I+V KNLR C DCH+A K ISK+ +R I VRD  R+H
Sbjct: 621 NLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFH 680

Query: 642 HFRNGKCSCNDFW 654
            F +G CSC D+W
Sbjct: 681 CFEDGSCSCKDYW 693



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 202/437 (46%), Gaps = 57/437 (13%)

Query: 21  ATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF 80
           A+N     F    +LD+   KC +    L  A  +  + GH +D     T++  +A  + 
Sbjct: 115 ASNFVPGVFISNRLLDMY-AKCGS----LVDAQMLFDEMGH-RDLCSWNTMIVGYA--KL 166

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTV 139
              E A K+F+ + + + F WN+ +   + HN+P   + L+  M   + S  NKFT  + 
Sbjct: 167 GRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSA 226

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
             A +     + G ++H ++++  L  D  V S+ + +Y   G +++AR I D     DV
Sbjct: 227 LAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDV 286

Query: 200 ICWNALI----------DGYLKCGDI---------------------EGAKELFKSTK-- 226
           + W  +I          +G+L   D+                       A+ L K     
Sbjct: 287 VSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGY 346

Query: 227 ------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                 D  + + +A++  +++ G    AR++FNEM+  D ++W+++I GY ++G   EA
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVD 339
           L  F  + +   KP +     VL+AC   G +D+G+ + H   +++ +   A     ++D
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466

Query: 340 MYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQREKMRP 395
           + A+ GR   A  + ++M +K + F W +++GG  +HG    A  A +  ++++ E    
Sbjct: 467 LLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE---- 522

Query: 396 DRITFACVLSACAHAGM 412
           +  T+  + +  A+AG+
Sbjct: 523 NPATYITLANIYANAGL 539



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 43/277 (15%)

Query: 254 NEMNDKDEIT----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           N +N KD ++    +   +D   +    KEA+E+   + R   +P   V S ++AAC   
Sbjct: 44  NHLNPKDLVSEDNKFEEAVDVLCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRH 100

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC------------------------- 344
            AL+ G  +H H K ++      +   L+DMYAKC                         
Sbjct: 101 RALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMI 160

Query: 345 ------GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDR 397
                 GRL+ A K+F++M  ++ F+WNA I G   H +  +A+ELF  MQR E+   ++
Sbjct: 161 VGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNK 220

Query: 398 ITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            T +  L+A A    +  G +   Y+ +    +D  V  +  ++DL G+ G L EA  + 
Sbjct: 221 FTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV--WSALLDLYGKCGSLDEARGIF 278

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
             M  + +   W  ++  C + G  E G  L + L++
Sbjct: 279 DQMK-DRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ 314


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/624 (33%), Positives = 340/624 (54%), Gaps = 55/624 (8%)

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKAC 143
           +A K+F+S+ + NV  W++++   +++  P  V  L+ +MV  D+  PN++   T   +C
Sbjct: 75  IARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC 134

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
             ++   EG Q H + +K+GL    +VK++ IQ+Y+    V  A QIL     +D+ C+N
Sbjct: 135 D-SQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYN 193

Query: 204 ALIDGYLKCGDIEGAKELFK----------------------STKDKNTGSY-------- 233
            +++G L+   +  A ++ K                      S KD   G          
Sbjct: 194 LVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS 253

Query: 234 ---------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                    +++I  + + G     R  F+ +  ++ ++W++II  Y ++ +++EAL +F
Sbjct: 254 DIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLF 313

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           ++M+ D I P ++ ++ +  + A L AL  G  +H   +++ +  + ++G AL+ MY K 
Sbjct: 314 SKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKS 373

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +  A  VF +M    + TWNA+I G + HG   +A+ +F  M     RP+ +TF  V+
Sbjct: 374 GDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVI 433

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            ACAH  ++D G     ++ + + I P +EHY CIV LL R+G L EAE  + S  +  +
Sbjct: 434 LACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWD 493

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
              W  LL AC  H   + G ++ + LL++EP++              RR D V ++RKL
Sbjct: 494 VVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKL 553

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M+ER +K  PG S +++  V H F + D  HP+   IY  +K ++ K++  GY P+   V
Sbjct: 554 MRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNV 613

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L DI++E+K     YHSEKLA+A+G + T  GA I VIKNLR+C+DCH+A KLISKV  R
Sbjct: 614 LHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANR 673

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
            I+VRD  R+HHF+NG CSC D+W
Sbjct: 674 VIVVRDANRFHHFQNGCCSCGDYW 697



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 129/271 (47%), Gaps = 7/271 (2%)

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           +D      N++I+ + +      ARKLF+ M  ++ ++WSA++ GY ++G   E  E+F 
Sbjct: 53  RDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFK 112

Query: 286 EM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           +M  +D I P ++V++  +++C S   + +G   H +  ++ +     +  AL+ +Y+KC
Sbjct: 113 KMVVKDNIFPNEYVIATAISSCDSQMYV-EGKQCHGYALKSGLEFHQYVKNALIQLYSKC 171

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +  A ++   +   ++F +N ++ GL  H    +A+++   +  E +  +  T+  + 
Sbjct: 172 SDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIF 231

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
             CA    I  G Q    M +   ID +V     I+D+ G+ G +         +    N
Sbjct: 232 RLCASLKDITLGKQVHAQMLKS-DIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRL-QSRN 289

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEME 495
              W +++ A   + + EF E    +  +ME
Sbjct: 290 VVSWTSIIAA---YFQNEFFEEALNLFSKME 317



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 144/322 (44%), Gaps = 15/322 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +LKS    D Y+  +++  +   +  N       F+ +   NV  W S++ A  
Sbjct: 244 KQVHAQMLKSDIDCDVYIGSSIIDMYG--KCGNVLSGRTFFDRLQSRNVVSWTSIIAAYF 301

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      ++L+S+M      PN++T   +F + +   A   G Q+HA   K+GL G+V 
Sbjct: 302 QNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVM 361

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----ST 225
           V ++ I MY   G +  A+ +  + +  ++I WNA+I G+   G  + A  +F+    + 
Sbjct: 362 VGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATG 421

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
           +  N  ++  +I   A     +E    FN +  +  I      ++ I+   ++ G   EA
Sbjct: 422 ERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEA 481

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
               N M+  +I         +L AC      D+G  I +++ +     D      L +M
Sbjct: 482 E---NFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLE-PRDVGTYILLSNM 537

Query: 341 YAKCGRLDMAWKVFEDMKMKEV 362
           +A+  R D   ++ + M+ + V
Sbjct: 538 HARVRRWDHVVEIRKLMRERNV 559


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/626 (33%), Positives = 333/626 (53%), Gaps = 83/626 (13%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           + L+Q HA ++ +G+ +   +   L+    ++R   +   L  F SV  P+ F++NSV++
Sbjct: 23  KQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLL--FLSVPLPDDFLFNSVIK 80

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           +  +   P   ++ Y  M+  +  P+ +T+ +V K+C+   A + G  VH H V +G   
Sbjct: 81  STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGL 140

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           D +V++                               AL+  Y KCGD+EGA        
Sbjct: 141 DTYVQA-------------------------------ALVTFYSKCGDMEGA-------- 161

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                                  R++F+ M +K  + W++++ G+ ++G   EA++VF +
Sbjct: 162 -----------------------RQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 198

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+    +P       +L+ACA  GA+  G W+H ++    + ++  LGTAL+++Y++CG 
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGD 258

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLS 405
           +  A +VF+ MK   V  W AMI     HG    A+ELF KM+ +    P+ +TF  VLS
Sbjct: 259 VGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLS 318

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG+++ G      M + Y + P VEH+ C+VD+LGRAG+L EA + I  +     A
Sbjct: 319 ACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKA 378

Query: 466 ---AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMR 508
              A+W A+LGAC+ H   + G  + K L+ +EP N               + D+V+ +R
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIR 438

Query: 509 KLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSS 568
             M    ++   G S+I+V    + F  GD SH +  EIY  L+ +I + K  GY+P S 
Sbjct: 439 DGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSE 498

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
           +V+  ++EEEKE A +YHSEKLA+AFG + T   A I ++KNLR+CEDCHSA K IS V 
Sbjct: 499 EVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDVA-ITIVKNLRICEDCHSAFKYISIVS 557

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
            R I VRD++R+HHF+NG CSC D+W
Sbjct: 558 NRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/606 (36%), Positives = 332/606 (54%), Gaps = 70/606 (11%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN--FELAL 87
           + K++L ++ T C T+ Q LKQ HA  + S      ++   ++    NS  S+   + A 
Sbjct: 5   TPKSVLALIET-C-TNIQQLKQIHAKSIISSLSYTQFIITKII----NSFLSHACLDYAT 58

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSIT 146
           +VFN   +P+ F++N+++RA      P   IS+Y++M    +   +K+TYP VFKAC+  
Sbjct: 59  QVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQ 118

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            A ++G +VH  +V+ G   D  ++SS +  Y   G +  A+Q+ D+    DV+ WNALI
Sbjct: 119 FAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALI 178

Query: 207 DGYLKCGDIEGAKELFKSTKD-----KNTGSY---------------------------- 233
            GY + G +  +  +FK   +      N G+                             
Sbjct: 179 TGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMV 238

Query: 234 --------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                    A+I+ + + G  + ARKLF+E+ +K+ + W+++I GY + G   E +E+  
Sbjct: 239 LREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLR 298

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           EM    +KP +F +S VL+ACA +GA + G W+H   ++  I  D  +GTAL+DMYAKCG
Sbjct: 299 EMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCG 357

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            +  A KVF+ M  + V TWNA++ G A HG+A+ AIELF +M+    RPD ITF  VL 
Sbjct: 358 FIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLH 417

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAH+G+++ G Q    M Q Y I P VEHYGC+VDLLGRAG L EA E+I  M +EPN 
Sbjct: 418 ACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNV 477

Query: 466 AVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCDDVAKMRKLM 511
            VW ALL AC  HG +E GE                  IL  +    +R + V  +R++M
Sbjct: 478 VVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMM 537

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
            E+GI  + G SMI++  V+HEF   D  HP+ +EIY +L ++ +KLKM GY P     L
Sbjct: 538 VEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVP-----L 592

Query: 572 FDIDEE 577
             +DEE
Sbjct: 593 LALDEE 598


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/694 (32%), Positives = 362/694 (52%), Gaps = 75/694 (10%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF 83
           IP+S +     + +L +KC+     L  AH    ++ H  + +    L+  +A    S  
Sbjct: 39  IPSSTYLSNHFI-LLYSKCNL----LTTAHHAFNQT-HEPNVFSFNALIAAYAKE--SLI 90

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
            +A  +F+ + +P++  +N+++ A  +  +    +SL+ EM  +    + FT+  V  AC
Sbjct: 91  HVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITAC 150

Query: 144 SITEADKEGV--QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS--DV 199
                +  G+  Q+H+    +G    V VK+S +  Y+  G + +A  + +   +   D 
Sbjct: 151 ----CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDE 206

Query: 200 ICWNALIDGY----------------------------------LKC-----GDIEGAKE 220
           + WN++I  Y                                    C     G ++   +
Sbjct: 207 VSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAK 266

Query: 221 LFKSTKDKNTGSYNAMISGFARFGR-FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK- 278
             K+  +KN    + +I  +A+ G    E+RK+F E+   D + W+ +I GY+++     
Sbjct: 267 AIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSV 326

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV-LGTAL 337
           EALE F +MQR    P      C ++AC++L +  QG   H    ++ I  + + +  AL
Sbjct: 327 EALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNAL 386

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           V MY+KCG L  A K+F+ M      T N++I G A HG   +++ LF +M    + P  
Sbjct: 387 VTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTS 446

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           IT   +LSACAH G ++ G +    M+ ++GI+PE EHY C++DLLGRAG L+EAE +I 
Sbjct: 447 ITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLID 506

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDD 503
           +MP  P +A W ALLGACRK+G +E  E+     L++EP N              R+ ++
Sbjct: 507 TMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEE 566

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
            A++RKLM++RGI+  PG S I++N  +H F   D SHP++KEI++ L ++  K+K  GY
Sbjct: 567 AARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGY 626

Query: 564 SPNSSQVLFDID---EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            P+        D   E+EKE    +HSEKLA+AFG + T  G  + V+KNLR+C DCH+A
Sbjct: 627 VPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNA 686

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K +S + +R I VRD  R+H F +G+CSC D+W
Sbjct: 687 IKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 164/417 (39%), Gaps = 73/417 (17%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           ++  + K+C   +    G  +H   +K+ +    ++ +  I +Y+    +  A    +  
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
            + +V  +NALI  Y K   I  A  LF      +  S+N +I+ +A  G    A  LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 255 EMND----KDEITWSAIIDG---------------------------------YTKDGYY 277
           EM +     D  T+S +I                                   Y+K+G  
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189

Query: 278 KEALEVFNEMQ---RDKIKPRK------------------------------FVLSCVLA 304
           +EA  VFN M    RD++                                  F L+ VL 
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR-LDMAWKVFEDMKMKEVF 363
             + +  L  G+  H    +     +  +G+ L+DMYAKCG  +  + KVFE++   ++ 
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLV 309

Query: 364 TWNAMIGGLAMHGRAD-DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            WN MI G + +     +A+E F +MQR    PD  +F C +SAC++     +G Q    
Sbjct: 310 VWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHAL 369

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             +      ++     +V +  + G L +A ++   MP + N     +++    +HG
Sbjct: 370 AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQHG 425


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/736 (30%), Positives = 370/736 (50%), Gaps = 120/736 (16%)

Query: 37  ILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK 95
           +L   C T ++   K  H+ I+K+  + + ++   L+  +A  +  +   A KVF+ +  
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYA--KLGSIPYACKVFDQMPH 72

Query: 96  PNVFVWNSVLRAC-----------LEHNEP--------------------WRVISLYSEM 124
           PN++ WN++L A            L    P                    ++ +  Y+ M
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132

Query: 125 VGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
           +  D     N+ T+ T+    S     K G Q+H HVVK G    V V S  + MY+  G
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMG 192

Query: 183 CVNKARQILDDGSKSDV-------------------------------ICWNALIDGYLK 211
            ++ AR++ D+  + +V                               I W ++I G+ +
Sbjct: 193 MISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ 252

Query: 212 CGDIEGAKELFKSTKDKNT-------GSY------------------------------- 233
            G    A ++F+  K +N        GS                                
Sbjct: 253 NGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFV 312

Query: 234 -NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
            +A++  + +    + A  +F +M  K+ ++W+A++ GY ++GY +EA++ F++MQ+  I
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI 372

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P  F L  V+++CA+L +L++G   H     + +     +  ALV +Y KCG ++ + +
Sbjct: 373 EPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHR 432

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           +F ++  K+  TW A++ G A  G+A++ I LF  M    ++PD++TF  VLSAC+ AG+
Sbjct: 433 LFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGL 492

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +++G Q    M   +GI P  +HY C++DL  RAG + EA   I+ MP  P+A  W  LL
Sbjct: 493 VEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLL 552

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
            +CR +G ++ G+   + L+E++P N               + ++VA++RK M+++G++ 
Sbjct: 553 SSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRK 612

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PG S I     +H F   D S+P   +IY  L+K+  K+  EGY P+ + VL D+ + E
Sbjct: 613 EPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSE 672

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           K     +HSEKLAIAFG +   PG  IRV+KNLRVC DCH+ATK ISK+  R+I+VRD  
Sbjct: 673 KIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTA 732

Query: 639 RYHHFRNGKCSCNDFW 654
           R+H F++G CSC DFW
Sbjct: 733 RFHLFKDGTCSCGDFW 748



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 171/374 (45%), Gaps = 15/374 (4%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  + K C  T    +   +H+H++K     +  + ++ I  YA  G +  A ++ D   
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
             ++  WN ++  Y K G +   + LF +   ++  S+N++ISG+A  G   ++ K +N 
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 256 MNDKD------EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           M   D       IT+S ++   +K G  K   ++   + +       FV S ++   + +
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           G +     + D +   ++    V+   L+    +CGR++ + ++F +M+ ++  +W +MI
Sbjct: 192 GMISCARKVFDELPEKNV----VMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMI 247

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G   +G   DAI++F +M+ E ++ D+ TF  VL+AC     +  G Q   Y+ +    
Sbjct: 248 TGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK 307

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           D  +     +VD+  +   +  AE V   M  + N   W A+L     +G+  + E   K
Sbjct: 308 D-NIFVASALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAMLVG---YGQNGYSEEAVK 362

Query: 490 ILLEMEPQNRRCDD 503
              +M+      DD
Sbjct: 363 TFSDMQKYGIEPDD 376


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/660 (34%), Positives = 349/660 (52%), Gaps = 60/660 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  +++ G   D  V   L+  +   +  +   A  VF+ + + +   WN+++    
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYV--KCGDIFSARLVFDRMPRRDRISWNAMISGYF 272

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E++     + L+  M      P+  T  +V  AC     ++ G +VH +V+K G   +V 
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS 332

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           V +S IQM++  GC ++A  +       D++ W A+I GY K G  E A E +   +   
Sbjct: 333 VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 227 ---------------------DKN---------TG--SY----NAMISGFARFGRFEEAR 250
                                DK          TG  SY    N++I  +++    ++A 
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ + +K+ I+W++II G   +    EAL  F +M    +KP    L  VL+ACA +G
Sbjct: 453 EVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIG 511

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G  IH H  R  +  D  L  AL+DMY +CGR++ AW  F   + K+V +WN ++ 
Sbjct: 512 ALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLT 570

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A  G+   A+ELF KM    + PD ITF  +L AC+ +GM+  GL+    M+  + I 
Sbjct: 571 GYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIA 630

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HY  +VDLLGRAG L +A E I  MP++P+ A+W ALL ACR +  VE GE   + 
Sbjct: 631 PNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQH 690

Query: 491 LLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           + EM+ +              + + D+VA++RK+M+E  +  +PG S ++V G +H F T
Sbjct: 691 IFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLT 750

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD  HPQ+KEI  +L+   EK++  G S +      DID  + E     HSE+LAIAFG 
Sbjct: 751 GDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGL 809

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND--FW 654
           INT PG  I V KNL +CE+CH+  K ISKV +R I VRD  ++HHF++G CSC D  +W
Sbjct: 810 INTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 49/444 (11%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           RF +   A  VF  + + ++F WN ++    +       ++LY  M+ V  +P+ +T+P 
Sbjct: 141 RFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V + C        G +VH HV++ G   DV V ++ I MY   G +  AR + D   + D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 199 VICWNALIDGYLK---CGDIEGAKELF---------------------KSTKDKNTGS-- 232
            I WNA+I GY +   C  +EG +  F                     ++  D+  G   
Sbjct: 261 RISWNAMISGYFENDVC--LEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 233 ---------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                           N++I   +  G ++EA  +F++M  KD ++W+A+I GY K+G  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           ++A+E +  M+ + + P +  ++ VL+ACA LG LD+GI +H+   R  +    ++  +L
Sbjct: 379 EKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSL 438

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMY+KC  +D A +VF  +  K V +W ++I GL ++ R+ +A+  FF+     ++P+ 
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNS 497

Query: 398 ITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
           +T   VLSACA  G +  G +   + ++   G D  + +   ++D+  R G +  A    
Sbjct: 498 VTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQF 555

Query: 457 SSMPMEPNAAVWEALLGACRKHGE 480
           +S   E + A W  LL    + G+
Sbjct: 556 NS--CEKDVASWNILLTGYAQQGK 577



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 187/412 (45%), Gaps = 42/412 (10%)

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           +L  CL+ +    +I L S M  +     + TY  + + C    A  EG +VH++V K  
Sbjct: 66  ILELCLKGDLEKALIHLDS-MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTV 124

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF- 222
               V + ++ + M+  FG + +A  +    ++ D+  WN L+ GY K G  + A  L+ 
Sbjct: 125 TRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYH 184

Query: 223 --------------------------------------KSTKDKNTGSYNAMISGFARFG 244
                                                 +   + +    NA+I+ + + G
Sbjct: 185 RMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG 244

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
               AR +F+ M  +D I+W+A+I GY ++    E L +F  M+   + P    ++ V++
Sbjct: 245 DIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS 304

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC +LG    G  +H +V +     +  +  +L+ M++  G  D A  VF  M+ K++ +
Sbjct: 305 ACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVS 364

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W AMI G   +G  + A+E +  M+ E + PD IT A VLSACA  G++D+G+    +  
Sbjct: 365 WTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFAD 424

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           +  G+   V     ++D+  +   + +A EV   +P   N   W +++   R
Sbjct: 425 RT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLR 474



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 148/310 (47%), Gaps = 13/310 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA++S F RFG   EA  +F +M ++D  +W+ ++ GY K GY+ EAL +++ M    I+
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  +   CVL  C  L  L +G  +H HV R     D  +  AL+ MY KCG +  A  V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++  +WNAMI G   +    + + LFF M+   + PD +T   V+SAC   G  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
             G +   Y+ +  G   EV     ++ +    G   EAE V S M  + +   W A++ 
Sbjct: 313 RLGREVHGYVIKT-GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMIS 370

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              K+G     E+  +    ME +    D++     L          G  ++D   ++HE
Sbjct: 371 GYEKNG---LPEKAVETYTIMEHEGVVPDEITIASVL------SACAGLGLLDKGIMLHE 421

Query: 534 F--RTGDGSH 541
           F  RTG  S+
Sbjct: 422 FADRTGLTSY 431


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/664 (31%), Positives = 338/664 (50%), Gaps = 95/664 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTL----VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           KQ H+  +K+G   D  V G+L    VKC        F L     ++++K          
Sbjct: 372 KQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKS--------- 422

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
                         ++++M      PN+FTYP++ K C+   A   G Q+H  V+K G  
Sbjct: 423 ------------FQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ 470

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            +V+V S  I MYA  G ++ A +I     ++DV+ W A+I GY +      A  LFK  
Sbjct: 471 FNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEM 530

Query: 226 KDKNTGS---------------------------------------YNAMISGFARFGRF 246
           +D+   S                                        NA++S +AR G+ 
Sbjct: 531 QDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKV 590

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            EA   F+++  KD ++W++++ G+ + GY++EAL +F +M +  ++   F     ++A 
Sbjct: 591 REAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAA 650

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A++  +  G  IH  +++     +  +  AL+ +YAKCG +D       D+      +WN
Sbjct: 651 ANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID-------DI------SWN 697

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +MI G + HG   +A++LF  M++  + P+ +TF  VLSAC+H G++D G+     M + 
Sbjct: 698 SMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEA 757

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + + P+ EHY C+VDLLGR+G L+ A+  +  MP++P+A VW  LL AC  H  ++ GE 
Sbjct: 758 HNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEF 817

Query: 487 LGKILLEMEPQNRR----------------CDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
               LLE+EP++                  C D  + R++MK+RG+K  PG S ++V+  
Sbjct: 818 AASHLLELEPKDSATYVLVSNMYAVSGKWDCRD--RTRQMMKDRGVKKEPGRSWVEVDNS 875

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F  GD +HP+   IY  L+ +  +    GY P  + +L D +  +K+     HSE+L
Sbjct: 876 VHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERL 935

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIAFG ++      + V KNLRVCEDCH+  K +SK+  R IIVRD  R+HHF+ G CSC
Sbjct: 936 AIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSC 995

Query: 651 NDFW 654
            D+W
Sbjct: 996 KDYW 999



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 218/480 (45%), Gaps = 48/480 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H ++LK G   + YV   LV  +  SR  N   A ++F+ + + +   +NS++    
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLY--SRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +     R ++L+ +M     KP+  T  ++  AC+   A   G Q H++ +K G+  D+ 
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIV 388

Query: 170 VKSSGIQMYA-------------CFG---CVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           V+ S + +Y              C+G    +NK+ QI        ++         LK  
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 214 DIEGAKEL--------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
              GA +L         K+    N    + +I  +A+ G+ + A K+F  + + D ++W+
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWT 508

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
           A+I GYT+   + EAL +F EMQ   IK      +  ++ACA + ALDQG  IH     +
Sbjct: 509 AMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLS 568

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
               D  +G ALV +YA+CG++  A+  F+ +  K+  +WN+++ G A  G  ++A+ +F
Sbjct: 569 GYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIF 628

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M +  +  +  TF   +SA A+   +  G Q +  M +  G D E E    ++ L  +
Sbjct: 629 AQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAK 687

Query: 446 AGYLAEAE---------------------EVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
            G + +                       E +  + + PN   +  +L AC   G V+ G
Sbjct: 688 CGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 210/464 (45%), Gaps = 44/464 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S++ ++Q HA  + SG     ++   L+  +  + F     A KVF ++   +   W +
Sbjct: 178 VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF--LSSAKKVFENLKARDSVSWVA 235

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    ++      + L+ ++V                AC+  E  + G Q+H  V+K G
Sbjct: 236 MISGLSQNGYEEEAMLLFCQIV--------------LSACTKVEFFEFGKQLHGLVLKQG 281

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              + +V ++ + +Y+  G ++ A QI    S+ D + +N+LI G  + G I  A  LFK
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFK 341

Query: 224 ST----KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK- 278
                 +  +  +  +++S  A  G     ++ F+    K  +T   +++G   D Y K 
Sbjct: 342 KMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKC 400

Query: 279 --------------------EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
                               ++ ++F +MQ + I P +F    +L  C +LGA D G  I
Sbjct: 401 SDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  V +     +  + + L+DMYAK G+LD A K+F  +K  +V +W AMI G   H + 
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKF 520

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +A+ LF +MQ + ++ D I FA  +SACA    +D+G Q +     + G   ++     
Sbjct: 521 TEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-IHAQSCLSGYSDDLSIGNA 579

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +V L  R G + EA      +  + N + W +L+    + G  E
Sbjct: 580 LVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFE 622



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 204/468 (43%), Gaps = 52/468 (11%)

Query: 80  FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV 139
           F +   A+ VF+ +   ++  WN +    +      RV  L+  M+  + + ++  +  V
Sbjct: 110 FGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVV 169

Query: 140 FKACSITEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
            + CS        V Q+HA  + +G      + +  I +Y   G ++ A+++ ++    D
Sbjct: 170 LRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARD 229

Query: 199 VICWNALIDGYLKCGDIEGAKELF-------------------------KSTKDKNTGSY 233
            + W A+I G  + G  E A  LF                         K      T   
Sbjct: 230 SVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVC 289

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+++ ++R G    A ++F+ M+ +D ++++++I G  + GY   AL +F +M  D  K
Sbjct: 290 NALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQK 349

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P    ++ +L+ACAS+GAL  G   H +  +  +  D V+  +L+D+Y KC  +  A + 
Sbjct: 350 PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEF 409

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADD---AIELFFKMQREKMRPDRITFACVLSACAHA 410
           F                    +G+ D+   + ++F +MQ E + P++ T+  +L  C   
Sbjct: 410 F------------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTL 451

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           G  D G Q  T + +  G    V     ++D+  + G L  A ++   +  E +   W A
Sbjct: 452 GATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTA 509

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKT 518
           ++    +H   +F E L  +  EM+ Q  + D++     +    GI+ 
Sbjct: 510 MIAGYTQHD--KFTEAL-NLFKEMQDQGIKSDNIGFASAISACAGIQA 554



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 28/278 (10%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I  +  FG    A  +F+EM  +    W+ I + +  +        +F  M    ++  
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 296 KFVLSCVLAACA----SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + + + VL  C+    S   ++Q   IH     +       +   L+D+Y K G L  A 
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQ---IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           KVFE++K ++  +W AMI GL+ +G  ++A+ LF ++              VLSAC    
Sbjct: 220 KVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVE 265

Query: 412 MIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
             + G  L  L   Q   G   E      +V L  R+G L+ AE++   M      + + 
Sbjct: 266 FFEFGKQLHGLVLKQ---GFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-YN 321

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507
           +L+    + G +     L K  + ++ Q   C  VA +
Sbjct: 322 SLISGLAQQGYINRALALFK-KMNLDCQKPDCVTVASL 358



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
           G  L+D Y   G L+ A  VF++M ++ +  WN +               LF +M  + +
Sbjct: 100 GLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV 159

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
             D   FA VL  C+   +  R ++ +       G +        ++DL  + G+L+ A+
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +V  ++    + + W A++    ++G  E
Sbjct: 220 KVFENLKARDSVS-WVAMISGLSQNGYEE 247


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 334/627 (53%), Gaps = 92/627 (14%)

Query: 51  QAHAVILKSGH--FQDHYVSGTLVKCHANSRFSNFELAL---KVFNSVHKPNVFVWNSVL 105
           Q HA +L++G   F     +   +   A S  S+  LA+    +    + P+ F  NS+L
Sbjct: 40  QLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSIL 99

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGL 164
           RA    ++P   +     +  +  + N FT   + K  CS+  A     Q+HA+VV  G 
Sbjct: 100 RAL---SDPSDALRFLCRVRALGRRGNAFTLAILLKPRCSLAHAR----QLHANVVAEG- 151

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
               H++                          D +   +L+  Y   GD +GA      
Sbjct: 152 ----HLR--------------------------DALLATSLMRCYANRGDGDGA------ 175

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                    RKLF+EM  +D + W+ +I  Y ++   K+AL++F
Sbjct: 176 -------------------------RKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLF 210

Query: 285 NEMQRDKIKPRKFVLSCVL--AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
            EM+    +     ++C+L   AC+SLGALD G  +  + + +    +  +  +L+ MY 
Sbjct: 211 EEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYL 270

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG +D A++VF     K V TW AMI GLA +G  +DAI +F +M R  + PD  TF  
Sbjct: 271 RCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTG 330

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS-MPM 461
           VLSAC+H+G++D G +    M+  YG+ P V HYGCIVDL+GRAG L EA E +++ M +
Sbjct: 331 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKV 390

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
            P+A +W  LLGACR HG V+ GER+   L+E++ Q                    V+++
Sbjct: 391 APDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEI 450

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RKLM+E GI+T PG + ++ NG +HEF   D +HP+  EIY  L +I ++L++ GY PN 
Sbjct: 451 RKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNV 510

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           S  L D+D E KE+A  YHSEKLAIAF  + T     IR+ KNLRVC DCH+ TK+ S +
Sbjct: 511 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAI 570

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++R +IVRDR R+HHF+ GKCSCND+W
Sbjct: 571 YRRIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           T+  +L  +C  S  H +Q HA ++  GH +D  ++ +L++C+AN    + + A K+F+ 
Sbjct: 126 TLAILLKPRC--SLAHARQLHANVVAEGHLRDALLATSLMRCYANR--GDGDGARKLFDE 181

Query: 93  VHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSK--PNKFTYPTVFKACSITEAD 149
           +   +   WN VL  C   N   +  + L+ EM G DS+  P+  T   + +ACS   A 
Sbjct: 182 MPVRDAVAWN-VLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGAL 240

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G QV A+  ++G  G++ V++S I MY   GCV+KA ++     +  V+ W A+I G 
Sbjct: 241 DFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 300

Query: 210 LKCG----DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-- 263
              G     I   +E+ +S    +  ++  ++S  +  G  +E  + F+ M  +  +   
Sbjct: 301 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 360

Query: 264 ---WSAIIDGYTKDGYYKEALE-VFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
              +  I+D   + G   EA E V NEM   K+ P   +   +L AC   G +D G
Sbjct: 361 VRHYGCIVDLMGRAGLLDEAYEFVTNEM---KVAPDATIWRTLLGACRIHGHVDLG 413


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/656 (32%), Positives = 353/656 (53%), Gaps = 54/656 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H V++K+G  +   VS +L+  +   +  N   A  +F+     +V  WNS++     
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      + ++  M     + ++ ++ +V K C+  +  +   Q+H  VVK G   D ++
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 171 KSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           +++ +  Y+ C   ++  R   + G   +V+ W A+I G+L+    E A +LF   K K 
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG 392

Query: 229 ---NTGSYN-------------------------------AMISGFARFGRFEEARKLFN 254
              N  +Y+                               A++  + + G+ EEA K+F+
Sbjct: 393 VRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA-LD 313
            ++DKD + WSA++ GY + G  + A+++F E+ +  IKP +F  S +L  CA+  A + 
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 512

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           QG   H    ++ +     + +AL+ MYAK G ++ A +VF+  + K++ +WN+MI G A
Sbjct: 513 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYA 572

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG+A  A+++F +M++ K++ D +TF  V +AC HAG+++ G +    M +   I P  
Sbjct: 573 QHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 632

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EH  C+VDL  RAG L +A +VI +MP    + +W  +L ACR H + E G    + ++ 
Sbjct: 633 EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIA 692

Query: 494 MEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M+P++                  + AK+RKLM ER +K  PG S I+V    + F  GD 
Sbjct: 693 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY+ L+ +  +LK  GY P++S VL DID+E KE     HSE+LAIAFG I T
Sbjct: 753 SHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 812

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF-RNGKCSCNDFW 654
             G+ + +IKNLRVC DCH   KLI+K+ +R+I+VRD  R+HHF  +G CSC DFW
Sbjct: 813 PKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 231/497 (46%), Gaps = 67/497 (13%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           ++L +  T C   +   +Q H   +K G   D  V  +LV  +     SNF+   KVF+ 
Sbjct: 98  SVLKVSATLCDELFG--RQLHCQCIKFGFLDDVSVGTSLVDTYMKG--SNFKDGRKVFDE 153

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           + + NV  W +++     ++    V++L+  M    ++PN FT+       +       G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
           +QVH  VVKNGL   + V +S I +Y   G V KAR + D      V+ WN++I GY   
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 213 G-DIEGAKELFKSTK-----------------------------------------DKNT 230
           G D+E A  +F S +                                         D+N 
Sbjct: 274 GLDLE-ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMN-DKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
            +  A++  +++     +A +LF E+    + ++W+A+I G+ ++   +EA+++F+EM+R
Sbjct: 333 RT--ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             ++P +F  S +L A   +   +    +H  V + +    + +GTAL+D Y K G+++ 
Sbjct: 391 KGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEE 446

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A KVF  +  K++  W+AM+ G A  G  + AI++F ++ +  ++P+  TF+ +L+ CA 
Sbjct: 447 AAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

Query: 410 AGMIDRGLQALTYMQQMYG------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
                    ++   +Q +G      +D  +     ++ +  + G +  AEEV      E 
Sbjct: 507 TN------ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ-REK 559

Query: 464 NAAVWEALLGACRKHGE 480
           +   W +++    +HG+
Sbjct: 560 DLVSWNSMISGYAQHGQ 576



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 168/373 (45%), Gaps = 49/373 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNVFVWNSVLRAC 108
           +Q H  ++K G   D  +   L+  +  S+ +    AL++F  +    NV  W +++   
Sbjct: 315 EQLHCSVVKYGFLFDQNIRTALMVAY--SKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           L+++     + L+SEM     +PN+FTY  +  A  +        +VHA VVK       
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSS 428

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
            V ++ +  Y   G V +A ++       D++ W+A++ GY + G+ E A ++F      
Sbjct: 429 TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG 488

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             KS  D +    +A+++ +A+ G  E 
Sbjct: 489 GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIES 548

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A ++F    +KD ++W+++I GY + G   +AL+VF EM++ K+K        V AAC  
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH 608

Query: 309 LGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WN 366
            G +++G    D + R+  I       + +VD+Y++ G+L+ A KV E+M      T W 
Sbjct: 609 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWR 668

Query: 367 AMIGGLAMHGRAD 379
            ++    +H + +
Sbjct: 669 TILAACRVHKKTE 681



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 2/241 (0%)

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           G     R   A  LF++   +D  ++ +++ G+++DG  +EA  +F  + R  ++    +
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S VL   A+L     G  +H    +     D  +GT+LVD Y K        KVF++MK
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            + V TW  +I G A +   D+ + LF +MQ E  +P+  TFA  L   A  G+  RGLQ
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
             T + +  G+D  +     +++L  + G + +A  +     ++ +   W +++     +
Sbjct: 216 VHTVVVK-NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAAN 273

Query: 479 G 479
           G
Sbjct: 274 G 274



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 134/299 (44%), Gaps = 21/299 (7%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+    +  +EF+   IL  L     +      + HA ++K+ + +   V   L+  +  
Sbjct: 387 EMKRKGVRPNEFTYSVILTALPVISPS------EVHAQVVKTNYERSSTVGTALLDAYV- 439

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            +    E A KVF+ +   ++  W+++L    +  E    I ++ E+     KPN+FT+ 
Sbjct: 440 -KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFS 498

Query: 138 TVFKACSITEADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           ++   C+ T A   +G Q H   +K+ L   + V S+ + MYA  G +  A ++     +
Sbjct: 499 SILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKL 252
            D++ WN++I GY + G    A ++FK  K +       ++  + +     G  EE  K 
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 253 FNEMNDKDEITW-----SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           F+ M    +I       S ++D Y++ G  ++A++V   M          +   +LAAC
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPN---PAGSTIWRTILAAC 674


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/433 (42%), Positives = 266/433 (61%), Gaps = 23/433 (5%)

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTK---------DGYYKEALEVFNEMQRDKIKPR 295
           R    R++F+ +   D   W+A++  Y +                LE+F  M    I+P 
Sbjct: 159 RIASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPN 218

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +  L  V+ AC  LGA+  G+W H +  +  + V+ ++ TALV+MYA CGRLD+A +VF 
Sbjct: 219 EITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFA 278

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
               ++   +NAM+ GLA+HG    A+ L  +M    +  D +T   V+ ACAHAG++D 
Sbjct: 279 AASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDE 338

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           GL     M+  +GI+P +EHYGC++D+L RAG L  AE++I  M + PNAA++ +L+ AC
Sbjct: 339 GLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRAC 398

Query: 476 RKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPG 521
             HG++E GE++   L+ +EP              +  R +D  K RK MK  GI  NPG
Sbjct: 399 GIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPG 458

Query: 522 SSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKET 581
           SS++D+NGV+HEF  GD +HP  KEIY M+++I  +L   G   ++S  LFD++EE+K  
Sbjct: 459 SSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKAD 518

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
              YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH + KL+S+V+ R+I++RDR R+H
Sbjct: 519 TLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFH 578

Query: 642 HFRNGKCSCNDFW 654
           HFR+G CSC DFW
Sbjct: 579 HFRDGVCSCGDFW 591



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 21/246 (8%)

Query: 88  KVFNSVHKPNVFVWNSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +VF+ +  P++  WN++L A             +    ++ L+  M+ +  +PN+ T   
Sbjct: 165 RVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVA 224

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV  H + VK  L  +  V ++ ++MYA  G ++ A Q+    S  D
Sbjct: 225 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRD 284

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
             C+NA++ G    G    A  L              +  +++   A  G  +E    F+
Sbjct: 285 TRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 344

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  I      +  +ID  ++ G    A ++ +EM    I P   +   ++ AC   
Sbjct: 345 RMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEML---IVPNAAIYRSLIRACGIH 401

Query: 310 GALDQG 315
           G L+ G
Sbjct: 402 GKLELG 407


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/657 (33%), Positives = 338/657 (51%), Gaps = 60/657 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  +++ G   D  V   L+  +   +  +   A  VF+ +   +   WN+++    
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYV--KCGDVNTARLVFDKMPNRDRISWNAMISGYF 284

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E+      + L+  M+     P+  T  +V  AC +   D+ G Q+H +V++     D  
Sbjct: 285 ENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPS 344

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----- 224
           + +S I MY+  G + +A  +       D++ W A+I GY  C   + A E +K      
Sbjct: 345 IHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEG 404

Query: 225 ------------------------------TKDKNTGSY----NAMISGFARFGRFEEAR 250
                                          K K   SY    N++I  +A+    ++A 
Sbjct: 405 IMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKAL 464

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+   +K+ ++W++II G   +    EAL  F EM R ++KP    L CVL+ACA +G
Sbjct: 465 EIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLVCVLSACARIG 523

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G  IH H  R  +  D  +  A++DMY +CGR++ AWK F  +   EV +WN ++ 
Sbjct: 524 ALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLT 582

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A  G+   A ELF +M    + P+ +TF  +L AC+ +GM+  GL+    M+  Y I 
Sbjct: 583 GYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIM 642

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK- 489
           P ++HY C+VDLLGR+G L EA E I  MPM+P+ AVW ALL +CR H  VE GE   + 
Sbjct: 643 PNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAEN 702

Query: 490 -------------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
                        +L  +   N + D VA++RK+M++ G+  +PG S ++V G +H F +
Sbjct: 703 IFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLS 762

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGY-SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            D  HPQ+KEI  +L++  +K+K  G   P SS +  DI E  K      HSE+LAI FG
Sbjct: 763 SDNFHPQIKEINALLERFYKKMKEAGVEGPESSHM--DIMEASKADIFCGHSERLAIVFG 820

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
            IN+ PG  I V KNL +C+ CH+  K IS+  +R+I VRD  ++HHF+ G CSC D
Sbjct: 821 LINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 219/477 (45%), Gaps = 72/477 (15%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           RF N   A  VF  + K N+F WN ++    +       + LY  M+ V  KP+ +T+P 
Sbjct: 153 RFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPC 212

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V + C        G ++H HV++ G   DV V ++ I MY   G VN AR + D     D
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRD 272

Query: 199 VICWNALIDGYLKCGD-IEGAK-------------------------------------- 219
            I WNA+I GY + G  +EG +                                      
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
            + ++   ++   +N++I  ++  G  EEA  +F+    +D ++W+A+I GY      ++
Sbjct: 333 YVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           ALE +  M+ + I P +  ++ VL+AC+ L  LD G+ +H+  K+  +   +++  +L+D
Sbjct: 393 ALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLID 452

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKC  +D A ++F     K + +W ++I GL ++ R  +A+  F +M R +++P+ +T
Sbjct: 453 MYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVT 511

Query: 400 FACVLSACA-----------HAGMIDRGLQALTYM------------------QQMYGID 430
             CVLSACA           HA  +  G+    +M                  +Q + +D
Sbjct: 512 LVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD 571

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFG 484
            EV  +  ++      G  A A E+   M    + PN   + ++L AC + G V  G
Sbjct: 572 HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEG 628



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 182/422 (43%), Gaps = 46/422 (10%)

Query: 94  HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153
           H PN  ++   L   L+     R +S    M  +        Y  + + C    A KEG 
Sbjct: 72  HNPNSHIYQLCLLGNLD-----RAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGS 126

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           +V+++V  +     + + ++ + M+  FG +  A  +     K ++  WN L+ GY K G
Sbjct: 127 RVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAG 186

Query: 214 DIEGAKELF---------------------------------------KSTKDKNTGSYN 234
             + A +L+                                       +   + +    N
Sbjct: 187 LFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVN 246

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           A+I+ + + G    AR +F++M ++D I+W+A+I GY ++G   E L +F  M +  + P
Sbjct: 247 ALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDP 306

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               ++ V+ AC  LG    G  IH +V R     D  +  +L+ MY+  G ++ A  VF
Sbjct: 307 DLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVF 366

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
              + +++ +W AMI G         A+E +  M+ E + PD IT A VLSAC+    +D
Sbjct: 367 SRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLD 426

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G+  L  + +  G+         ++D+  +   + +A E+  S  +E N   W +++  
Sbjct: 427 MGMN-LHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILG 484

Query: 475 CR 476
            R
Sbjct: 485 LR 486



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 2/219 (0%)

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G    A+   + M   +I         ++  C    A  +G  ++ +V  +   +   LG
Sbjct: 85  GNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLG 144

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            AL+ M+ + G L  AW VF  M+ + +F+WN ++GG A  G  D+A++L+ +M    ++
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD  TF CVL  C     + RG +   ++ + YG + +V+    ++ +  + G +  A  
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIR-YGFESDVDVVNALITMYVKCGDVNTARL 263

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           V   MP     + W A++    ++G    G RL  ++++
Sbjct: 264 VFDKMPNRDRIS-WNAMISGYFENGVCLEGLRLFGMMIK 301


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 322/588 (54%), Gaps = 50/588 (8%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P     ++  + +L + C TS + + Q  A I+ +G   + Y++  LV   A  +   + 
Sbjct: 32  PPHRLLEERFISLLQS-CKTS-KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY- 88

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A ++F+ +  PN+ +WNS+ R   +      V+ L+ +M G+D +PN FT+P V K+C 
Sbjct: 89  -ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCG 147

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A  EG QVH  ++K G  G+  V ++ I MY+  G V  A +I  +  + +V+ W +
Sbjct: 148 KINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTS 207

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI-- 262
           +I+GY+   D+  A+ LF    +++   +N M+SG+   G   EARKLF+EM ++D +  
Sbjct: 208 MINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFW 267

Query: 263 -----------------------------TWSAIIDGYTKDGYYKEALEVFNEMQRDK-I 292
                                        +W+A+I GY  +G + E L  F  M  +  +
Sbjct: 268 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 327

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P    L  VL+ACA LGALD G W+H + + + +  +  +G AL+DMYAKCG ++ A  
Sbjct: 328 PPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAIS 387

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF  M  K++ +WN +IGGLAMH R  DA+ LFF+M+    +PD ITF  +L AC H G+
Sbjct: 388 VFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGL 447

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           ++ G      M   Y I P++EHYGC+VD+L RAG L +A   +  MP+E +  +W  LL
Sbjct: 448 VEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 507

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
           GACR +  VE  E   + L+E+EP+N               R +DVA+++  M++ G K 
Sbjct: 508 GACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKK 567

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
            PG S+I+VN  + EF + D  HPQ++EIY +L+ +++ L+  GY P+
Sbjct: 568 LPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPD 615


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/656 (34%), Positives = 347/656 (52%), Gaps = 58/656 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  +++ G   D  V   L+  +   +  +   A  VF+ + + +   WN+++    
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYV--KCGDIFSARLVFDRMPRRDRISWNAMISGYF 272

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E++     + L+  M      P+  T  +V  AC     ++ G +VH +V+K G   +V 
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS 332

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           V +S IQM++  GC ++A  +       D++ W A+I GY K G  E A E +   +   
Sbjct: 333 VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 227 ---------------------DKN---------TG--SY----NAMISGFARFGRFEEAR 250
                                DK          TG  SY    N++I  +++    ++A 
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ + +K+ I+W++II G   +    EAL  F +M    +KP    L  VL+ACA +G
Sbjct: 453 EVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIG 511

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           AL  G  IH H  R  +  D  L  AL+DMY +CGR++ AW  F   + K+V +WN ++ 
Sbjct: 512 ALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLT 570

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           G A  G+   A+ELF KM    + PD ITF  +L AC+ +GM+  GL+    M+  + I 
Sbjct: 571 GYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIA 630

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           P ++HY  +VDLLGRAG L +A E I  MP++P+ A+W ALL ACR +  VE GE   + 
Sbjct: 631 PNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQH 690

Query: 491 LLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           + EM+ +              + + D+VA++RK+M+E  +  +PG S ++V G +H F T
Sbjct: 691 IFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLT 750

Query: 537 GDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           GD  HPQ+KEI  +L+   EK++  G S +      DID  + E     HSE+LAIAFG 
Sbjct: 751 GDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGL 809

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           INT PG  I V KNL +CE+CH+  K ISKV +R I VRD  ++HHF++G CSC D
Sbjct: 810 INTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 49/444 (11%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           RF +   A  VF  + + ++F WN ++    +       ++LY  M+ V  +P+ +T+P 
Sbjct: 141 RFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V + C        G +VH HV++ G   DV V ++ I MY   G +  AR + D   + D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 199 VICWNALIDGYLK---CGDIEGAKELF---------------------KSTKDKNTGS-- 232
            I WNA+I GY +   C  +EG +  F                     ++  D+  G   
Sbjct: 261 RISWNAMISGYFENDVC--LEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 233 ---------------YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                           N++I   +  G ++EA  +F++M  KD ++W+A+I GY K+G  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           ++A+E +  M+ + + P +  ++ VL+ACA LG LD+GI +H+   R  +    ++  +L
Sbjct: 379 EKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSL 438

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMY+KC  +D A +VF  +  K V +W ++I GL ++ R+ +A+  FF+     ++P+ 
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNS 497

Query: 398 ITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
           +T   VLSACA  G +  G +   + ++   G D  + +   ++D+  R G +  A    
Sbjct: 498 VTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQF 555

Query: 457 SSMPMEPNAAVWEALLGACRKHGE 480
           +S   E + A W  LL    + G+
Sbjct: 556 NS--CEKDVASWNILLTGYAQQGK 577



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 197/435 (45%), Gaps = 43/435 (9%)

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           +L  CL+ +    +I L S M  +     + TY  + + C    A  EG +VH++V K  
Sbjct: 66  ILELCLKGDLEKALIHLDS-MQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTV 124

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF- 222
               V + ++ + M+  FG + +A  +    ++ D+  WN L+ GY K G  + A  L+ 
Sbjct: 125 TRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYH 184

Query: 223 --------------------------------------KSTKDKNTGSYNAMISGFARFG 244
                                                 +   + +    NA+I+ + + G
Sbjct: 185 RMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG 244

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
               AR +F+ M  +D I+W+A+I GY ++    E L +F  M+   + P    ++ V++
Sbjct: 245 DIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS 304

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           AC +LG    G  +H +V +     +  +  +L+ M++  G  D A  VF  M+ K++ +
Sbjct: 305 ACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVS 364

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W AMI G   +G  + A+E +  M+ E + PD IT A VLSACA  G++D+G+    +  
Sbjct: 365 WTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFAD 424

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA-LLGACRKHGEVEF 483
           +  G+   V     ++D+  +   + +A EV   +P   N   W + +LG    +   E 
Sbjct: 425 RT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYRSFEA 482

Query: 484 GERLGKILLEMEPQN 498
                +++L ++P +
Sbjct: 483 LFFFQQMILSLKPNS 497



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 148/310 (47%), Gaps = 13/310 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA++S F RFG   EA  +F +M ++D  +W+ ++ GY K GY+ EAL +++ M    I+
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  +   CVL  C  L  L +G  +H HV R     D  +  AL+ MY KCG +  A  V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M  ++  +WNAMI G   +    + + LFF M+   + PD +T   V+SAC   G  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
             G +   Y+ +  G   EV     ++ +    G   EAE V S M  + +   W A++ 
Sbjct: 313 RLGREVHGYVIKT-GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMIS 370

Query: 474 ACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
              K+G     E+  +    ME +    D++     L          G  ++D   ++HE
Sbjct: 371 GYEKNG---LPEKAVETYTIMEHEGVVPDEITIASVL------SACAGLGLLDKGIMLHE 421

Query: 534 F--RTGDGSH 541
           F  RTG  S+
Sbjct: 422 FADRTGLTSY 431


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 335/609 (55%), Gaps = 62/609 (10%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADK-EGVQVHAH 158
           WN +L A      P   + ++  +    ++PN  T+     AC+ + + D  E V+V A 
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
               G   DV V S+ + +Y+  G + +A ++ D   + D + W+ ++ G++  G    A
Sbjct: 135 AAGYG--HDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEA 192

Query: 219 KELFK----------------------STKDKNTG-----------------SYNAMISG 239
             ++                       ST +   G                 +  +++S 
Sbjct: 193 LAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSM 252

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G  + A ++F  M  ++++TWSA+I G+ ++G   EAL++F E+Q D ++P  + L
Sbjct: 253 YAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWAL 312

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L ACAS+G L  G  IH  + R  +    +LGTA++DMY+KCG L+ A K+F  +  
Sbjct: 313 VSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSS 371

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           +++  WNA+I     HG   DA+ LF ++    ++PD  TFA +LSA +H+G+++ G   
Sbjct: 372 RDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 431

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M + +GI+P  +HY CIVDLL R+G + EA ++++SM  EP  A+W  LL  C  + 
Sbjct: 432 FDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNK 491

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
           ++E GE + K +LE+ P++              ++ D V ++RKLMK+ G K  PG S+I
Sbjct: 492 KLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLI 551

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           +V G  H F   D SHPQ +EI  M+ K+  +++  GY P +  V  D+DE++  +   Y
Sbjct: 552 EVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQLLS---Y 608

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSE+LAIAFG +NT PG  + +IKNLRVC DCH A K ISK+  R+I+VRD  R+HHF++
Sbjct: 609 HSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKD 668

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 669 GACSCGDYW 677



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 46/391 (11%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKS---GHFQDHYVSGTLVKCHANSRF 80
           +P+S     T   +  T C      L  A +V +++   G+  D +V   L+  H  SR 
Sbjct: 99  LPSSARPNSTTFTLTLTAC-ARLGDLDAAESVRVRAFAAGYGHDVFVCSALL--HLYSRC 155

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
              E A++VF+ + + +   W++++   +    P   +++YS M       ++     V 
Sbjct: 156 GAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVI 215

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           +AC  T   + G  VH  ++++ +  DV   +S + MYA  G ++ A Q+       + +
Sbjct: 216 QACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDV 275

Query: 201 CWNALIDGYLKCGDIEGAKELFKSTK--------------------------DKNTGSY- 233
            W+ALI G+ + G    A +LF+  +                           K+   + 
Sbjct: 276 TWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFI 335

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                       A++  +++ G  E ARKLFN+++ +D + W+AII      G   +AL 
Sbjct: 336 LRRLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALA 395

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMY 341
           +F E+    IKP     + +L+A +  G +++G  W    +K   I         +VD+ 
Sbjct: 396 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLL 455

Query: 342 AKCGRLDMAWKVFEDMKMK-EVFTWNAMIGG 371
           A+ G ++ A  +   M+ +  +  W  ++ G
Sbjct: 456 ARSGLVEEANDMLASMQTEPTIAIWVILLSG 486


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/628 (35%), Positives = 338/628 (53%), Gaps = 91/628 (14%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA  +KS   Q+      L    A S   +   A  + N+    N + +N+++RA   
Sbjct: 6   QLHAQFIKS---QNQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSH 62

Query: 111 HNEP---WRVISLYSEMVGVDS---KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            + P   ++ +SL+  M+   +   KP+ FTY    K+                      
Sbjct: 63  TSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKS---------------------- 100

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
           CG + +     Q++   G +NK       G   D+   NALI  Y               
Sbjct: 101 CGRLKLTQQAKQLH---GFINKM------GFGFDLYIQNALIHMY--------------- 136

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                           +  G    AR++F+ M+ +D ++W+++I G+       EA+++F
Sbjct: 137 ----------------SEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLF 180

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M    +   +  +  VL  CA  GAL  G  +H  VK   I   A + TAL+ MY+KC
Sbjct: 181 QRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKC 240

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+ A +VF+D+  ++VF W AMI GLA HG   +AIELF +M+   ++PD  T   VL
Sbjct: 241 GCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVL 300

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SA  +AG++  G      +Q+ Y + P ++H+GC+VDLL + G L EAE+ I++MPM+P+
Sbjct: 301 SAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPD 360

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEME------------------PQNRRCDDVAK 506
           A +W  L+ AC+ H + E  ERL K  LE++                     + CD  A+
Sbjct: 361 AVIWRTLIWACKVHADTERAERLMK-HLELQGMSAHDSGSYILASNVYASTGKWCDK-AE 418

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           +R+LM ++G+   PGSS I+V+GV+HEF  GD  HP  ++I++ L ++++KL+ EGY+P 
Sbjct: 419 VRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPK 478

Query: 567 SSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISK 626
            S+V+ ++D+EEK     +HSEKLA+A+G I T PG+ IR++KNLR CEDCH   KLISK
Sbjct: 479 VSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISK 538

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V++RDIIVRDR+R+HHF+NG CSC D+W
Sbjct: 539 VYQRDIIVRDRIRFHHFKNGDCSCKDYW 566



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 135/334 (40%), Gaps = 51/334 (15%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q  KQ H  I K G   D Y+   L+  H  S      +A +VF+ +   +V  W S++ 
Sbjct: 108 QQAKQLHGFINKMGFGFDLYIQNALI--HMYSEIGELVIARQVFDRMSHRDVVSWTSMIA 165

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             + H+     I L+  M+ V    N+ T  +V + C+ + A   G +VH  V + G+  
Sbjct: 166 GFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDF 225

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
             +V ++ I MY+  GC+  AR++ DD    DV  W                        
Sbjct: 226 KANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVW------------------------ 261

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMN----DKDEITWSAIIDGYTKDGYYKEALE 282
                   AMI G A  G  +EA +LF EM       DE T   ++  Y   G  +E   
Sbjct: 262 -------TAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYM 314

Query: 283 VFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
            FN++Q R  +KP      C++   A  G L++     D +    +  DAV+   L+   
Sbjct: 315 FFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEA---EDFINAMPMKPDAVIWRTLI--- 368

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
                   A KV  D +  E    +  + G++ H
Sbjct: 369 -------WACKVHADTERAERLMKHLELQGMSAH 395


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 299/534 (55%), Gaps = 59/534 (11%)

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           Y   G +++AR++ D   + +V+ W A+I GY++ G IE A+ LF    ++N  S+  M+
Sbjct: 35  YVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVML 94

Query: 238 SGFARFGRFEEARKLFNEM----------------------------------------- 256
            G    GR +EAR+LF+ M                                         
Sbjct: 95  GGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTS 154

Query: 257 ---NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
               +KD+ TWS +I  Y + G+  EAL +F+ MQR+ ++P    +  VL+ C SL +LD
Sbjct: 155 MISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLD 214

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G  +H  + R+   +D  + + L+ MY KCG L  A +VF+    K++  WN++I G A
Sbjct: 215 HGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYA 274

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG  + A+E+F  M    + PD ITF  VLSAC++ G +  GL+    M+  Y +DP+ 
Sbjct: 275 QHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKT 334

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C+VDLLGRAG L EA  +I +MP+E +A VW ALLGACR H  ++  E   K LL+
Sbjct: 335 EHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQ 394

Query: 494 MEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EP N               R  DV ++RK M+ + ++ +PG S I+V+  +H F  G  
Sbjct: 395 LEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGS 454

Query: 540 -SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
            SHP+ + I   L K+   L+  GY P+ S V+ D+DEEEK  + + HSEKLA+A+G + 
Sbjct: 455 TSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLK 514

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
              G  IRV+KNLRVC D HS  KLI++V  R+II+RD  R+HHF++G CSC+D
Sbjct: 515 VPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 32/314 (10%)

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
           GY +      A++LF    + NT S+N ++SG+ + G   EARK+F++M +++ ++W+A+
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAM 62

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS--CVLAACASLGALDQGIWIHDHVKRN 325
           I GY ++G  +EA  +F  M      P + V+S   +L      G +D+   + D +   
Sbjct: 63  IRGYVQEGLIEEAELLFWRM------PERNVVSWTVMLGGLIEDGRVDEARQLFDMMP-- 114

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG----------LAMH 375
               D V  T ++D     GRL  A ++F++M  + V  W +MI G          + ++
Sbjct: 115 --VKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIY 172

Query: 376 GRAD---DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDP 431
            R     +A+ LF  MQRE +RP   +   VLS C     +D G Q  + + +  + ID 
Sbjct: 173 ERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDI 232

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
            V     ++ +  + G L  A+ V      + +  +W +++    +HG   FGE+  ++ 
Sbjct: 233 YVS--SVLITMYIKCGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQHG---FGEKALEVF 286

Query: 492 LEMEPQNRRCDDVA 505
            +M   +   D++ 
Sbjct: 287 HDMFSSSIAPDEIT 300



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 124/312 (39%), Gaps = 79/312 (25%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPW--------------RVISLYSEMVGVDSKP 131
           A ++F+ + + NV  W S++    + +  W                ++L+S M     +P
Sbjct: 137 AREIFDEMPQRNVVAWTSMISG-EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRP 195

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           +  +  +V   C    +   G QVH+ +V++    D++V S  I MY   G +  A+++ 
Sbjct: 196 SFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVF 255

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARK 251
           D  S  D++ WN++I GY + G  E A E+F                             
Sbjct: 256 DRFSSKDIVMWNSIIAGYAQHGFGEKALEVF---------------------------HD 288

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLG 310
           +F+     DEIT+  ++   +  G  KE LE+F  M+ + ++ P+    +C         
Sbjct: 289 MFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYAC--------- 339

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMI 369
                                     +VD+  + G+L+ A  + E+M ++ +   W A++
Sbjct: 340 --------------------------MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373

Query: 370 GGLAMHGRADDA 381
           G    H   D A
Sbjct: 374 GACRTHKNLDLA 385



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 23/230 (10%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S  H +Q H+ +++S    D YVS  L+  +   +  +   A +VF+     ++ +WNS
Sbjct: 211 ASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYI--KCGDLVTAKRVFDRFSSKDIVMWNS 268

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++    +H    + + ++ +M      P++ T+  V  ACS T   KEG+++   +    
Sbjct: 269 IIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK- 327

Query: 164 LCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDG-----YL 210
                +      + YAC        G +N+A  ++++   ++D I W AL+        L
Sbjct: 328 -----YQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNL 382

Query: 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
              +I  AK+L +  +  N G Y  + + ++   R+++  +L   M  K+
Sbjct: 383 DLAEI-AAKKLLQ-LEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKN 430


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 320/609 (52%), Gaps = 83/609 (13%)

Query: 67  VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV--ISLYSEM 124
           +S  L+   A S   +   A  VF+ +H P    WNS++R   +   P ++  I  Y+ M
Sbjct: 432 ISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHM 491

Query: 125 VGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183
           +    ++P+ +T+  + KAC   EA +EG            C +VH    G         
Sbjct: 492 LSASHARPDTYTFSFLLKACE--EAKEEGK-----------CREVH----GF-------- 526

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                 I+  G   DV+    LI  Y                               A  
Sbjct: 527 ------IIRFGYDQDVVLCTNLIRSY-------------------------------AGN 549

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G  E A K+F EM  +D ++W+++I  Y + G ++EAL+++++M+   +    F L  +L
Sbjct: 550 GLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLL 609

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           ++CA +GAL  G+ +H       +  +  +G AL+DMYAKCG L  A  +F  M  ++VF
Sbjct: 610 SSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVF 669

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           TWN+MI G  +HGR D+AI  F  M    +RP+ ITF  +L  C+H G++  G+Q    M
Sbjct: 670 TWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMM 729

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              + + P ++HYGC+VDL GRAG L EA EVI S P + +  +W  LLG+C+ H  VE 
Sbjct: 730 SSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEI 789

Query: 484 GE-------RLGK-------ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GE       +LG        +L  +  + +    VA+MRKL++ RGIKT PG S I+V  
Sbjct: 790 GEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGD 849

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK----ETAPKY 585
            +H F   D SHP  +EIY  L+++I +  + GY+   S ++   +   +    ET+  Y
Sbjct: 850 QVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSY 909

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSEKLAIA+G   T  G ++ ++KNLRVC DCH+ TK +SK F R+IIVRDRVR+HHFR 
Sbjct: 910 HSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRG 969

Query: 646 GKCSCNDFW 654
           G CSC +FW
Sbjct: 970 GHCSCKEFW 978



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 135/307 (43%), Gaps = 40/307 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  I++ G+ QD  +   L++ +A +     E A KVF  +   ++  WNS++    
Sbjct: 521 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGL--IETAHKVFEEMPARDLVSWNSMISCYC 578

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + +Y +M   +   + FT  ++  +C             AHV      G +H
Sbjct: 579 QTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSC-------------AHV------GALH 619

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           +   G+QM+   G     R+++++     +   NALID Y KCG +  A  +F S   ++
Sbjct: 620 M---GVQMHRFAG----ERRLVEN-----IFVGNALIDMYAKCGSLASALSIFNSMPKRD 667

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEM----NDKDEITWSAIIDGYTKDGYYKEALEVFN 285
             ++N+MI G+   GR +EA   F  M       + IT+  ++ G +  G  KE ++ F+
Sbjct: 668 VFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFH 727

Query: 286 EMQRD-KIKPRKFVLSCVLAACASLGALDQGIWI--HDHVKRNSICVDAVLGTALVDMYA 342
            M  +  +KP      C++      G L + + +      + + +    +LG+  +    
Sbjct: 728 MMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNV 787

Query: 343 KCGRLDM 349
           + G + M
Sbjct: 788 EIGEMAM 794


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 334/627 (53%), Gaps = 92/627 (14%)

Query: 51  QAHAVILKSGH--FQDHYVSGTLVKCHANSRFSNFELAL---KVFNSVHKPNVFVWNSVL 105
           Q HA +L++G   F     +   +   A S  S+  LA+    +    + P+ F  NS+L
Sbjct: 54  QLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQCNSIL 113

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGL 164
           RA    ++P   +     +  +  + N FT   + K  CS+  A     Q+HA+VV  G 
Sbjct: 114 RAL---SDPSDALRFLCRVRALGRRGNAFTLAILLKPRCSLAHAR----QLHANVVAEG- 165

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
               H++                          D +   +L+  Y   GD +GA      
Sbjct: 166 ----HLR--------------------------DALLATSLMRCYANRGDGDGA------ 189

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                    RKLF+EM  +D + W+ +I  Y ++   K+AL++F
Sbjct: 190 -------------------------RKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLF 224

Query: 285 NEMQRDKIKPRKFVLSCVL--AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
            EM+    +     ++C+L   AC+SLGALD G  +  + + +    +  +  +L+ MY 
Sbjct: 225 EEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYL 284

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG +D A++VF     K V TW AMI GLA +G  +DAI +F +M R  + PD  TF  
Sbjct: 285 RCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTG 344

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS-MPM 461
           VLSAC+H+G++D G +    M+  YG+ P V HYGCIVDL+GRAG L EA E +++ M +
Sbjct: 345 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKV 404

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
            P+A +W  LLGACR HG V+ GER+   L+E++ Q                    V+++
Sbjct: 405 APDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEI 464

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RKLM+E GI+T PG + ++ NG +HEF   D +HP+  EIY  L +I ++L++ GY PN 
Sbjct: 465 RKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNV 524

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           S  L D+D E KE+A  YHSEKLAIAF  + T     IR+ KNLRVC DCH+ TK+ S +
Sbjct: 525 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAI 584

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ++R +IVRDR R+HHF+ GKCSCND+W
Sbjct: 585 YRRIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           T+  +L  +C  S  H +Q HA ++  GH +D  ++ +L++C+AN    + + A K+F+ 
Sbjct: 140 TLAILLKPRC--SLAHARQLHANVVAEGHLRDALLATSLMRCYANR--GDGDGARKLFDE 195

Query: 93  VHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSK--PNKFTYPTVFKACSITEAD 149
           +   +   WN VL  C   N   +  + L+ EM G DS+  P+  T   + +ACS   A 
Sbjct: 196 MPVRDAVAWN-VLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGAL 254

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G QV A+  ++G  G++ V++S I MY   GCV+KA ++     +  V+ W A+I G 
Sbjct: 255 DFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 314

Query: 210 LKCG----DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-- 263
              G     I   +E+ +S    +  ++  ++S  +  G  +E  + F+ M  +  +   
Sbjct: 315 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 374

Query: 264 ---WSAIIDGYTKDGYYKEALE-VFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
              +  I+D   + G   EA E V NEM   K+ P   +   +L AC   G +D G
Sbjct: 375 VRHYGCIVDLMGRAGLLDEAYEFVTNEM---KVAPDATIWRTLLGACRIHGHVDLG 427


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/624 (33%), Positives = 339/624 (54%), Gaps = 55/624 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A+++F+++ +PN+  W +++    +++     ++ +S M      P +F   +  +A + 
Sbjct: 72  AVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAA 131

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
             A   G Q+H   V+ G   ++ V S+   MY+  G + +A ++ D   + D + W A+
Sbjct: 132 LAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAM 191

Query: 206 IDGYLKCGDIEGAKELF----------------------------------------KST 225
           IDGY K G++E A   F                                        KS 
Sbjct: 192 IDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSG 251

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFN-EMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
            ++     NA+   +A+    + A ++   +    + ++ +++IDGY +    ++AL +F
Sbjct: 252 FEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMF 311

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            E++R  ++P +F  S ++  CA    L+QG  +H  V + S+  D+ + + L+DMY KC
Sbjct: 312 IELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKC 371

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G + ++ ++F++++      WNA I  LA HG   +AI  F +M    +RP+ ITF  +L
Sbjct: 372 GLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLL 431

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+HAG++D GL+    M+  +GI+P+ EHY CI+D+ GRAG L EAE+ I  MP++PN
Sbjct: 432 TACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPN 491

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKL 510
           A  W +LLGACR  G  E GE     ++++EP N               + +DV  +RKL
Sbjct: 492 AYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKL 551

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M++  IK  PG S +D N   H F + D SHPQ ++IY  L+++ E++K EGY P++  +
Sbjct: 552 MRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFL 611

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
             ++++  K+   +YHSE++A+AF  I+      I V KNLR+C DCHSA K ISKV  R
Sbjct: 612 PCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENR 671

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           DIIVRD  R+HHF  G CSC D+W
Sbjct: 672 DIIVRDNSRFHHFVKGGCSCGDYW 695



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 148/331 (44%), Gaps = 21/331 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRAC 108
           +  H+ ++KSG  Q+  V   L   +A +  ++ + A +V        NV    S++   
Sbjct: 241 RAIHSCVMKSGFEQEVAVRNALTDMYAKA--ADMDNAARVVKIDQGSLNVVSATSLIDGY 298

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +E +   + + ++ E+     +PN+FT+ ++ K C++    ++G Q+HA V+K  L  D 
Sbjct: 299 IETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDS 358

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD----IEGAKELFKS 224
            V S+ + MY   G ++ + Q+  +      I WNA I+   + G     I     +  S
Sbjct: 359 FVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSS 418

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
               N  ++ ++++  +  G  +E  K F  M D   I      +S IID Y + G   E
Sbjct: 419 GIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDE 478

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A +   EM    +KP  +    +L AC   G  + G    D++ +       V   +L  
Sbjct: 479 AEKFIGEM---PVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGV-HVSLSG 534

Query: 340 MYAKCGR---LDMAWKVFEDMKMKEV--FTW 365
           +YA  G+   +    K+  D ++K++  F+W
Sbjct: 535 IYASLGQWEDVKAVRKLMRDNRIKKLPGFSW 565



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 4/251 (1%)

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
           G L+ G    A+ +       +T   N +I+ ++       A +LF+ M   + ++W+ +
Sbjct: 31  GDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTL 90

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           + G T++  +++AL  F+ M R  + P +F LS    A A+L A   G  +H    R   
Sbjct: 91  VSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGF 150

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             +  + + L DMY+K G L  A +VF+ M  K+   W AMI G A +G  + A+  F  
Sbjct: 151 DAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRD 210

Query: 388 MQREKM-RPDRITFACVLSACAHAGMIDRGL-QALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           M+RE +   D+     VLSA    G+ D  L +A+       G + EV     + D+  +
Sbjct: 211 MRREGLVGADQHVLCSVLSAS--GGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAK 268

Query: 446 AGYLAEAEEVI 456
           A  +  A  V+
Sbjct: 269 AADMDNAARVV 279


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/544 (37%), Positives = 318/544 (58%), Gaps = 47/544 (8%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           S + +L +L+ +C T   H+KQ  + +  SG   D + +G ++   A S   +   A  +
Sbjct: 12  SSRRVLSLLD-QCVT-MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLL 69

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F S+ +   F+WN++LRA  +  EP  V+SLY  M+     PN +T+  + +AC+     
Sbjct: 70  FLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDL 129

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
             G+ +HA  V+ G              +  +  V                  N L+  Y
Sbjct: 130 SFGILLHAQAVRLG--------------WEAYDFVQ-----------------NGLLHLY 158

Query: 210 LKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
             C  ++ A+ LF  + +++  ++ A+I+G+A+ G+   AR+LF+EM +K+ ++WSA+I 
Sbjct: 159 ASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMIT 218

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           GY + G ++EALE+FN+MQ    +P    +   L ACA LGALDQG WIH +V RN + +
Sbjct: 219 GYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVL 278

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D +LGTAL+DMYAKCG ++ A +VF++M  ++VF + ++I GLA HG +  AIE+F +MQ
Sbjct: 279 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            E + P+ +TF C+LSAC+  G+++ GL+    M  +YGI+P V+HYGC+VDLLGRAG L
Sbjct: 339 NEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGML 398

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE--------------ME 495
            +A+ V+  MP+EP++ V  ALL ACR HG+VE G+   + L E              M 
Sbjct: 399 EDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMY 458

Query: 496 PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               + +DVAK+RK M+E+ +K  PG S+I+V+G + EF  GD SH  + EI L+L  I 
Sbjct: 459 ASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGID 518

Query: 556 EKLK 559
           + LK
Sbjct: 519 KHLK 522


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 313/577 (54%), Gaps = 54/577 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P    Y ++ ++C   +A K G Q+HA V   G   D  + +  + +Y     ++ AR +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----------------------- 227
            D   K ++  WN LI GY   G  E A +L+    D                       
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 228 ----------------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                           K+     A+I  +A+ G    AR++F+++  +D + W++++  Y
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY 252

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
           +++G+    L + +EM    ++P +  L   ++A A   AL QG  +H    R       
Sbjct: 253 SQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHD 312

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            + TALVDMYAKCG + +A  +FE + +K V +WNAMI G AMHG A +A++LF +M R 
Sbjct: 313 KVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRV 372

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451
             +PD ITF  VLSAC+H G+++ G      M + Y IDP V+HY C+VDLLG +G L E
Sbjct: 373 A-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 431

Query: 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------Q 497
           A  +I  M + P++ VW ALL +C+ H  VE GE   + L+E+EP              Q
Sbjct: 432 AYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQ 491

Query: 498 NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEK 557
             + + VAK+RKLM +R +K +   S I+V   +H F +GD SHP   EIY  L+++   
Sbjct: 492 AGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGL 551

Query: 558 LKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           +K  GYSP++  V  D++++EK      HSE+LAIAFG I+T PG  + + KNLR+CEDC
Sbjct: 552 MKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDC 611

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H A K ISK+ +R+I VRD  RYHHF++G CSC D+W
Sbjct: 612 HVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 171/375 (45%), Gaps = 52/375 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           KQ HA +  +G   D  ++  LV   C  +S  S    A  +F+ + K N+F+WN ++R 
Sbjct: 95  KQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS----ARLLFDRIPKHNIFLWNVLIRG 150

Query: 108 CLEHNEPWRV-ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
               N P+   + LY +M      P+ FT+P V KAC+   A + G ++H HVV+ G   
Sbjct: 151 -YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------------ 214
           DV V ++ I MYA  GCV  AR++ D     D + WN+++  Y + G             
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 215 -----------------------IEGAKELFKSTKDKNTGSYN----AMISGFARFGRFE 247
                                  +   +EL   +  +   S++    A++  +A+ G   
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVR 329

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            AR LF  +  K  ++W+A+I GY   G+  EAL++F EM R   KP       VL+AC+
Sbjct: 330 VARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNR-VAKPDHITFVGVLSACS 388

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMK-MKEVFT 364
             G L++G W+          +D  +   T +VD+    GRLD A+ +   MK + +   
Sbjct: 389 HGGLLEEG-WMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGV 447

Query: 365 WNAMIGGLAMHGRAD 379
           W A++    +H   +
Sbjct: 448 WGALLNSCKIHANVE 462


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/692 (32%), Positives = 372/692 (53%), Gaps = 70/692 (10%)

Query: 28   EFSQKTILDILNTKCHTSWQHLKQA-------HAVILKSGHFQDHYVSGTLVKCHANSRF 80
            E + ++++ +L+T   T + +LK+        HA + +SG   D  +S      +   + 
Sbjct: 448  EINSESLVVLLST--FTEFSNLKEGKRKGQEVHAYLFRSG-LVDARISIGNALVNMYGKC 504

Query: 81   SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTV 139
            +  + A  VF  +   +   WNS++   L+HNE +   +S +  M      P+ F+  + 
Sbjct: 505  TAIDNACSVFQLMPSKDTVSWNSMISG-LDHNERFEEAVSCFHTMKRNGMVPSNFSVIST 563

Query: 140  FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
              +CS       G Q+H    K GL  DV V ++ + +YA    +N+ +++     + D 
Sbjct: 564  LSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ 623

Query: 200  ICWNALIDGYLK--CGDIEGAK---ELFKSTKDKNTGSY--------------------- 233
            + WN+ I    K     ++  K   E+ ++    N  ++                     
Sbjct: 624  VSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHA 683

Query: 234  --------------NAMISGFARFGRFEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYK 278
                          NA+++ + +  + E+   +F+ M+++ DE++W+++I GY   G   
Sbjct: 684  LILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILH 743

Query: 279  EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            +A+++   M +   K   F  + VL+ACAS+  L++G+ +H    R  +  D V+G+ALV
Sbjct: 744  KAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALV 803

Query: 339  DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            DMYAKCG++D A + FE M ++ +++WN+MI G A HG    A+++F +M++    PD +
Sbjct: 804  DMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHV 863

Query: 399  TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            TF  VLSAC+H G++D G +    M ++YG+ P +EH+ C+VDLLGRAG + + E+ I +
Sbjct: 864  TFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKT 923

Query: 459  MPMEPNAAVWEALLGA-CRKHGE-VEFGERLGKILLEMEPQNR--------------RCD 502
            MPM+PN  +W  +LGA CR +G   E G+R  K+L+E+EPQN                 +
Sbjct: 924  MPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWE 983

Query: 503  DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
            DV + R  M++  +K + G S +++   +H F  GD +HP+ ++IY  LK+++ K++  G
Sbjct: 984  DVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAG 1043

Query: 563  YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
            Y P +   L+D++ E KE    YHSEKLAIAF  +       IR++KNLRVC DCH+A K
Sbjct: 1044 YVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFK 1102

Query: 623  LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             ISK+  R II+RD  R+HHF  G CSC D+W
Sbjct: 1103 YISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 231/521 (44%), Gaps = 66/521 (12%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           K  +S       H  + K+G   D +   TL+  +   R  N   A K+F+ + + N+  
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYV--RIGNLVSARKLFDEMPQKNLVS 208

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI--TEADKEGVQVHAH 158
           W+ ++    ++  P    SL+  ++     PN F   +  +AC    +   K G+Q+HA 
Sbjct: 209 WSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAF 268

Query: 159 VVKNGLCGDVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217
           + K     D+ + +  + MY+ C G ++ A ++ D+    + + WN++I  Y + GD   
Sbjct: 269 ICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVS 328

Query: 218 AKELFKST-----------------------------------------------KDKNT 230
           A +LF                                                  +D   
Sbjct: 329 AFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYV 388

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
           GS  A+++GFAR+G  + A+ +F +M D++ +T + ++ G  +    +EA +VF EM +D
Sbjct: 389 GS--ALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KD 445

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIW----IHDHVKRNSICVDA--VLGTALVDMYAKC 344
            ++     L  +L+       L +G      +H ++ R+ + VDA   +G ALV+MY KC
Sbjct: 446 LVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL-VDARISIGNALVNMYGKC 504

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +D A  VF+ M  K+  +WN+MI GL  + R ++A+  F  M+R  M P   +    L
Sbjct: 505 TAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTL 564

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           S+C+  G +  G Q +      +G+D +V     ++ L      + E ++V   MP E +
Sbjct: 565 SSCSSLGWLTLGRQ-IHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYD 622

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
              W + +GA  K+ E    + L K  LEM     R + V 
Sbjct: 623 QVSWNSFIGALAKY-EASVLQAL-KYFLEMMQAGWRPNRVT 661



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/504 (23%), Positives = 217/504 (43%), Gaps = 56/504 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L+Q    I KSG  +D YV   LV   A  R+   + A  +F  ++  N    N ++   
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVNGFA--RYGLMDCAKMIFKQMYDRNAVTMNGLMVGL 427

Query: 109 LEHNEPWRVISLYSEM---VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              ++      ++ EM   V ++S+       T  +  ++ E  ++G +VHA++ ++GL 
Sbjct: 428 ARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLV 487

Query: 166 -GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID----------------- 207
              + + ++ + MY     ++ A  +       D + WN++I                  
Sbjct: 488 DARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHT 547

Query: 208 -----------------------GYLKCG-DIEGAKELFKSTKDKNTGSYNAMISGFARF 243
                                  G+L  G  I G  E FK   D +    NA+++ +A  
Sbjct: 548 MKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHG--EGFKWGLDLDVSVSNALLTLYAET 605

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTK-DGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
               E +K+F +M + D+++W++ I    K +    +AL+ F EM +   +P +     +
Sbjct: 606 DSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINI 665

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKE 361
           LAA +S   L  G  IH  + + S+  D  +  AL+  Y KC +++    +F  M + ++
Sbjct: 666 LAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRD 725

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             +WN+MI G    G    A++L + M +   + D  TFA VLSACA    ++RG++   
Sbjct: 726 EVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHA 785

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
              +   ++ +V     +VD+  + G +  A      MP+  N   W +++    +HG  
Sbjct: 786 CAVRA-CLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGH- 842

Query: 482 EFGERLGKILLEMEPQNRRCDDVA 505
             G++  KI   M+   +  D V 
Sbjct: 843 --GQKALKIFTRMKQHGQSPDHVT 864



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 210/474 (44%), Gaps = 52/474 (10%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA I K     D  +S  L+  +++   S  + A +VF+ +   N   WNS++     
Sbjct: 264 QIHAFICKLPCVSDMILSNVLMSMYSDCSGS-IDDAHRVFDEIKFRNSVTWNSIISVYCR 322

Query: 111 HNEPWRVISLYSEM----VGVDSKPNKFTYPT-VFKACSITEADKEGV-QVHAHVVKNGL 164
             +      L+S M    V ++ +PN++T  + V  ACS+ +     + Q+   + K+G 
Sbjct: 323 RGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGF 382

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             D++V S+ +  +A +G ++ A+ I       + +  N L+ G  +    E A ++FK 
Sbjct: 383 LRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKE 442

Query: 225 TKDK---NTGSYNAMISGFARFGRFEEARK------------------------------ 251
            KD    N+ S   ++S F  F   +E ++                              
Sbjct: 443 MKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYG 502

Query: 252 ----------LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
                     +F  M  KD ++W+++I G   +  ++EA+  F+ M+R+ + P  F +  
Sbjct: 503 KCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIS 562

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
            L++C+SLG L  G  IH    +  + +D  +  AL+ +YA+   ++   KVF  M   +
Sbjct: 563 TLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYD 622

Query: 362 VFTWNAMIGGLAMH-GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
             +WN+ IG LA +      A++ F +M +   RP+R+TF  +L+A +   ++  G Q  
Sbjct: 623 QVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIH 682

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             + + Y +  +      ++   G+   + + E + S M    +   W +++  
Sbjct: 683 ALILK-YSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISG 735


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/697 (33%), Positives = 362/697 (51%), Gaps = 76/697 (10%)

Query: 17  EEISATNIPTSEFSQ----KTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLV 72
           E I +T + +S   Q    K+I DI   + H             LK G    H +   L+
Sbjct: 72  ETIQSTKLYSSLIQQCIGIKSITDITKIQSHA------------LKRGF--HHSLGNKLI 117

Query: 73  KCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132
             +   +  +   A KVF+ V   ++  WNS++ + + +      I +Y  MV     P+
Sbjct: 118 DAYL--KCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 175

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGL-CGDVHVKSSGIQMYACFGCVNKARQIL 191
           +FT+ +VFKA S      EG + H   V  G+   +V V S+ + MYA FG +  AR + 
Sbjct: 176 EFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVS 235

Query: 192 DDGSKSDVICWNALIDGY--------------------------------LKCGDIEGAK 219
           D     DV+ + ALI GY                                + CG++E   
Sbjct: 236 DQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLT 295

Query: 220 E-------LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                   + K+  +    S  ++++ + R G  +++ K+F +  + +++TW+++I G  
Sbjct: 296 SGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLV 355

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332
           ++G  + AL  F +M R  I P  F LS VL AC+SL  L+QG  IH  V +  + +D  
Sbjct: 356 QNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKY 415

Query: 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
           +G AL+D Y KCG  ++A  VF  +   +V + N+MI   A +G   +A++LF  M+   
Sbjct: 416 VGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTG 475

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           + P+ +T+  VLSAC +AG+++ G    +  +    I+   +HY C+VDLLGRAG L EA
Sbjct: 476 LEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEA 535

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------------- 498
           E +I+ + +  +  +W  LL ACR HG+VE  +R+   ++++ P++              
Sbjct: 536 EMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYAST 594

Query: 499 RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
                V +M+  M+E  +K NP  S +DV   IH F  GD SHP  ++I   L+++IEK+
Sbjct: 595 GNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKV 654

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD-PGATIRVIKNLRVCEDC 617
           K  GY P++  VL D+DEE+K  +  YHSEKLA+AF    ++    TIR++KNLRVC DC
Sbjct: 655 KELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDC 714

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+  K +SK+  RDII RD  R+HHFRNG CSC D+W
Sbjct: 715 HTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/664 (32%), Positives = 351/664 (52%), Gaps = 63/664 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H   +++G        G  L+  +A  +  + + A  VF  +   +   WNS++   
Sbjct: 122 RQVHGYAIRTGLNDAKVAVGNGLINMYA--KCGDIDHARSVFGLMVDKDSVSWNSMITG- 178

Query: 109 LEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           L+ N+ +   +  Y+ M      P+ F   +   +C+       G Q H   +K GL  D
Sbjct: 179 LDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMD 238

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD-----IEGAKELF 222
           V V ++ + +YA    + + +++     + D + WN +I      G      IE   E+ 
Sbjct: 239 VSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM 298

Query: 223 KSTKDKNTGSY-----------------------------------NAMISGFARFGRFE 247
           ++    N  ++                                   NA+++ + + G  E
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEME 358

Query: 248 EARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              ++F+ M+++ DE++W+++I GY  +    +A+++   M +   +   F  + VL+AC
Sbjct: 359 NCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSAC 418

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A++  L+ G+ +H    R  +  D V+G+ALVDMY+KCGR+D A + F  M ++ +++WN
Sbjct: 419 ATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWN 478

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           +MI G A HG  D+A+ LF +M+     PD ITF  VLSAC+H G++D G +    M ++
Sbjct: 479 SMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEV 538

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHG-EVEFG 484
           YG+ P VEHY C+VDLLGRAG L + E  I+ MP++PN  +W  +LGA CR +G + E G
Sbjct: 539 YGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELG 598

Query: 485 ERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
            R  ++L  M+PQN               + +D+A+ R+ M+E  +K   G S + +   
Sbjct: 599 RRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDG 658

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F  GD SHP+   IY  LK++ +K++  GY P     L+D++ E KE    YHSEKL
Sbjct: 659 VHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKL 718

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           A+AF  +  + G  IR++KNLRVC DCHSA K ISKV  R I++RD  R+HHF +GKCSC
Sbjct: 719 AVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSC 777

Query: 651 NDFW 654
            D+W
Sbjct: 778 RDYW 781



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 180/422 (42%), Gaps = 66/422 (15%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  +LK G   D ++  TL+  +   R  +   A K+F+ +   N   W  ++    ++ 
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYV--RIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA-DKEGVQVHAHVVKNGLCGDVHVK 171
            P     +  EM+     PN+F + +  +AC  +    ++G QVH + ++ GL       
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGL------- 133

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231
                        N A+          V   N LI+ Y KCGDI+ A+ +F    DK++ 
Sbjct: 134 -------------NDAK----------VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSV 170

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
           S+N+MI+G  +   FE+A K                                +N M++  
Sbjct: 171 SWNSMITGLDQNKCFEDAVK-------------------------------SYNSMRKTG 199

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           + P  F L   L++CASLG +  G   H    +  + +D  +   L+ +YA+  RL    
Sbjct: 200 LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQ 259

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRA-DDAIELFFKMQREKMRPDRITFACVLSACAHA 410
           KVF  M  ++  +WN +IG LA  G +  +AIE+F +M R    P+R+TF  +L+  +  
Sbjct: 260 KVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSL 319

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
                  Q    + + Y +  +      ++   G++G +   EE+ S M    +   W +
Sbjct: 320 STSKLSHQIHALILK-YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNS 378

Query: 471 LL 472
           ++
Sbjct: 379 MI 380



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 6/249 (2%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I+ + R G    ARKLF+EM D++ +TW+ +I GYT++G  ++A  V  EM  +   
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 294 PRKFVLSCVLAACA-SLGALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAW 351
           P +F     + AC  S+    +G  +H +  R  +      +G  L++MYAKCG +D A 
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            VF  M  K+  +WN+MI GL  +   +DA++ +  M++  + P        LS+CA  G
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 412 MIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
            I  G Q  T+ + +  G+D +V     ++ L      LAE ++V S M +E +   W  
Sbjct: 219 CILLGQQ--THGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM-LERDQVSWNT 275

Query: 471 LLGACRKHG 479
           ++GA    G
Sbjct: 276 VIGALADSG 284



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 20/287 (6%)

Query: 33  TILDILNTKCHTSWQHLK-QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T +++L T    S   L  Q HA+ILK     D+ +   L+ C+  S     E   ++F+
Sbjct: 308 TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKS--GEMENCEEIFS 365

Query: 92  SV-HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
            +  + +   WNS++   + +    + + L   M+    + + FT+ TV  AC+     +
Sbjct: 366 RMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLE 425

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G++VHA  ++  L  DV + S+ + MY+  G ++ A +  +     ++  WN++I GY 
Sbjct: 426 CGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYA 485

Query: 211 KCGDIEGAKELFKSTKDKNTG------SYNAMISGFARFGRFEEARKLFNEMNDKDEIT- 263
           + G  + A  LF  T+ K +G      ++  ++S  +  G  +E  + F  M +   +  
Sbjct: 486 RHGHGDNALRLF--TRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVP 543

Query: 264 ----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
               +S ++D   + G   +     N+M    IKP   +   VL AC
Sbjct: 544 RVEHYSCMVDLLGRAGELDKIENFINKM---PIKPNILIWRTVLGAC 587


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 313/571 (54%), Gaps = 49/571 (8%)

Query: 42  CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVW 101
           C TS + + Q  A I+ +G   + Y++  LV   A  +   +  A ++F+ +  PN+ +W
Sbjct: 111 CKTS-KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY--ARQLFDQIPDPNIALW 167

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           NS+ R   +      V+ L+ +M G+D +PN FT+P V K+C    A  EG QVH  ++K
Sbjct: 168 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 227

Query: 162 NGLCGDVHVKSSGIQMYACFGCVN-------------------------------KARQI 190
            G  G+  V ++ I MY+  G V                                 AR++
Sbjct: 228 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRL 287

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            D   + DV+ WN ++ GY++ GD+  A++LF    +++   +N ++ G+A  G  E   
Sbjct: 288 FDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALE 347

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
            LF EM +++  +W+A+I GY  +G + E L  F  M  +  + P    L  VL+ACA L
Sbjct: 348 GLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARL 407

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GALD G W+H + + + +  +  +G AL+DMYAKCG ++ A  VF  M  K++ +WN +I
Sbjct: 408 GALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLI 467

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           GGLAMH R  DA+ LFF+M+    +PD ITF  +L AC H G+++ G      M   Y I
Sbjct: 468 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 527

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P++EHYGC+VD+L RAG L +A   +  MP+E +  +W  LLGACR +  VE  E   +
Sbjct: 528 MPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQ 587

Query: 490 ILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            L+E+EP+N               R +DVA+++  M++ G K  PG S+I+VN  + EF 
Sbjct: 588 RLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFY 647

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566
           + D  HPQ++EIY +L+ +++ L+  GY P+
Sbjct: 648 SLDERHPQIEEIYGVLRGLVKVLRSFGYVPD 678


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 352/665 (52%), Gaps = 73/665 (10%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA+++K G  +   V  +L+  +  SR      A  VF+ +   +   WNS++   + 
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLY--SRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +   V  ++++M     KP   T+ +V K+C+          +    +K+G   D   
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTD--- 329

Query: 171 KSSGIQMYACFGCVNKARQILDDGS-------KSDVICWNALIDGYLKCGDIEGAKELF- 222
               I + A    ++K +++ D  S         +V+ W A+I G L+ G  + A  LF 
Sbjct: 330 ---QIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFS 386

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K+  ++++    A++  + + G   +
Sbjct: 387 QMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTID 446

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A K+F  +  KD + WSA++ GY + G  +EA ++F+++ ++ IKP +F  S V+ ACAS
Sbjct: 447 AVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACAS 506

Query: 309 -LGALDQGIWIHDHVKR----NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
              A +QG   H +  +    N++CV     +ALV MYAK G +D A +VF+  K +++ 
Sbjct: 507 PTAAAEQGKQFHAYAIKMRLNNALCVS----SALVTMYAKRGNIDSAHEVFKRQKERDLV 562

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WN+MI G + HG+A  A+E+F +MQ+  M  D +TF  V++AC HAG++++G +    M
Sbjct: 563 SWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSM 622

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEF 483
              + I+P ++HY C++DL  RAG L +A  +I+ MP  P A VW  LLGA R H  VE 
Sbjct: 623 INDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVEL 682

Query: 484 GERLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNG 529
           GE   + L+ ++P++                  +   +RKLM +R +K  PG S I+V  
Sbjct: 683 GELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKN 742

Query: 530 VIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEK 589
             + F  GD +HP   +IY  L ++  +LK  GY P++  V  DI++E+KET   +HSE+
Sbjct: 743 KTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSER 802

Query: 590 LAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
           LAIAFG I T P   I+++KNLRVC DCH+ TKL+S V +R I+VRD  R+HHF++G CS
Sbjct: 803 LAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCS 862

Query: 650 CNDFW 654
           C D+W
Sbjct: 863 CGDYW 867



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 172/363 (47%), Gaps = 42/363 (11%)

Query: 85  LALKVFNSV-HKPNVFV-WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
           +A  +F+ + H+P      N +L +     +    ++L+  ++    +P++ T   VF  
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C+ +   K G QVH   VK GL   V V +S + MY     VN  R++ D+  + +V+ W
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 203 NALIDGYLKCGDIEGAKELF---------------------------------------K 223
            +L+ GY   G      ELF                                       K
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEV 283
              ++    +N++IS ++R G   +AR +F++M  +D +TW+++I GY ++G   E  E+
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 284 FNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           FN+MQ   +KP     + V+ +CASL  L     +     ++    D ++ TAL+   +K
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSK 342

Query: 344 CGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           C  +D A  +F  M+  K V +W AMI G   +G  D A+ LF +M+RE ++P+  T++ 
Sbjct: 343 CKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSA 402

Query: 403 VLS 405
           +L+
Sbjct: 403 ILT 405



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 127/249 (51%), Gaps = 12/249 (4%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           + + HA ++K+ + +   V   L+  +   +  N   A+KVF  +   ++  W+++L   
Sbjct: 412 VSEMHAEVIKTNYERSSSVGTALLDAYV--KLGNTIDAVKVFEIIEAKDLMAWSAMLAGY 469

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC-SITEADKEGVQVHAHVVKNGLCGD 167
            +  E      L+ +++    KPN+FT+ +V  AC S T A ++G Q HA+ +K  L   
Sbjct: 470 AQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNA 529

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           + V S+ + MYA  G ++ A ++     + D++ WN++I GY + G  + A E+F   + 
Sbjct: 530 LCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQK 589

Query: 228 KNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYK 278
           +N      ++  +I+     G  E+ +K FN M +   I      +S +ID Y++ G  +
Sbjct: 590 RNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLE 649

Query: 279 EALEVFNEM 287
           +A+ + NEM
Sbjct: 650 KAMGIINEM 658



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 138/278 (49%), Gaps = 17/278 (6%)

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ--GIWIHDHVKR 324
           ++  Y++D   KEAL +F  +    ++P +  LSCV   CA  G+LD   G  +H    +
Sbjct: 64  LLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICA--GSLDGKLGRQVHCQCVK 121

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
             +     +GT+LVDMY K   ++   +VF++M  + V +W +++ G + +G      EL
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +MQ E + P+R T + V++A  + G++  GLQ +  M   +G +  +  +  ++ L  
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALL-GACRKHGEVEFGERLGKILLE-MEPQNRRCD 502
           R G L +A +V   M +  +   W +++ G  R   ++E  E   K+ L  ++P +    
Sbjct: 241 RLGMLRDARDVFDKMEIR-DWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFA 299

Query: 503 DVAK---------MRKLMKERGIKTNPGSSMIDVNGVI 531
            V K         + KLM+ + +K+   +  I +  ++
Sbjct: 300 SVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALM 337


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/665 (33%), Positives = 346/665 (52%), Gaps = 63/665 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H  +LKSG   +   S  L+  +   R     +A KVF+S+ + NV  W++++   + 
Sbjct: 27  QVHCYLLKSGSGLNLITSNYLIDMYCKCR--EPLMAYKVFDSMPERNVVSWSALMSGHVL 84

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +    +SL+SEM      PN+FT+ T  KAC +  A ++G+Q+H   +K G    V V
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN- 229
            +S + MY+  G +N+A ++        +I WNA+I G++  G    A + F   ++ N 
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANI 204

Query: 230 ------------------TG-------------------SYNAMISG-----FARFGRFE 247
                             TG                     +A I+G     + + G   
Sbjct: 205 KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLF 264

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            ARK F+++ +K  I+WS++I GY ++G + EA+ +F  +Q    +   F LS ++   A
Sbjct: 265 SARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFA 324

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
               L QG  +     +    ++  +  ++VDMY KCG +D A K F +M++K+V +W  
Sbjct: 325 DFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 384

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I G   HG    ++ +F++M R  + PD + +  VLSAC+H+GMI  G +  + + + +
Sbjct: 385 VITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETH 444

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P VEHY C+VDLLGRAG L EA+ +I +MP++PN  +W+ LL  CR HG++E G+ +
Sbjct: 445 GIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEV 504

Query: 488 GKILLEMEPQNRR--------------CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
           GKILL ++ +N                 ++    R+L   +G+K   G S +++   +H 
Sbjct: 505 GKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHF 564

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
           FR+G+ SHP    I   LK+   +L+ E GY       L DID+E KE   + HSEKLAI
Sbjct: 565 FRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAI 624

Query: 593 AFGFIN---TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649
                       G TIRV KNLRVC DCH   K +SK+ K   +VRD VR+H F +G CS
Sbjct: 625 GLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCS 684

Query: 650 CNDFW 654
           C D+W
Sbjct: 685 CGDYW 689



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 199/418 (47%), Gaps = 52/418 (12%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           ++ + C+      +G QVH +++K+G   ++   +  I MY        A ++ D   + 
Sbjct: 11  SILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER 70

Query: 198 DVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSYNAMISG---- 239
           +V+ W+AL+ G++  GD++G+  LF               ST  K  G  NA+  G    
Sbjct: 71  NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIH 130

Query: 240 ---------------------FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                                +++ GR  EA K+F  + D+  I+W+A+I G+   GY  
Sbjct: 131 GFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGS 190

Query: 279 EALEVFNEMQRDKIK--PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI-C-VDAVLG 334
           +AL+ F  MQ   IK  P +F L+ +L AC+S G +  G  IH  + R+   C   A + 
Sbjct: 191 KALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT 250

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            +LVD+Y KCG L  A K F+ +K K + +W+++I G A  G   +A+ LF ++Q    +
Sbjct: 251 GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQ 310

Query: 395 PDRITFACVLSACAHAGMIDRG--LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            D    + ++   A   ++ +G  +QAL  ++   G++  V     +VD+  + G + EA
Sbjct: 311 IDSFALSSIIGVFADFALLRQGKQMQALA-VKLPSGLETSV--LNSVVDMYLKCGLVDEA 367

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
           E+  + M ++ +   W  ++    KHG    G++  +I  EM   N   D+V  +  L
Sbjct: 368 EKCFAEMQLK-DVISWTVVITGYGKHG---LGKKSVRIFYEMLRHNIEPDEVCYLAVL 421



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 94/176 (53%), Gaps = 2/176 (1%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L  +L  C   G  DQG  +H ++ ++   ++ +    L+DMY KC    MA+KVF+ M 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            + V +W+A++ G  ++G    ++ LF +M R+ + P+  TF+  L AC     +++GLQ
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ 128

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
              +  ++ G +  VE    +VD+  + G + EAE+V   + ++ +   W A++  
Sbjct: 129 IHGFCLKI-GFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAG 182


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/650 (34%), Positives = 347/650 (53%), Gaps = 57/650 (8%)

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK-PNVFVWNSVLRACLEHNEPWRVI 118
           G  +D  V+ +L+  H  ++    E A  VF S+    ++    +++ A + H +    +
Sbjct: 98  GFEKDVVVATSLI--HLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLAL 155

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
             Y +M     +P+ FTY  +  ACS  +   +G  +H H++++   G++ V+++ I MY
Sbjct: 156 DTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMY 215

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---------------- 222
           A  G +  ++ +       DV+ WNA+I  Y   G  + A  LF                
Sbjct: 216 AKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFS 275

Query: 223 ------KSTK-----------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
                  S K                 D++    N +IS F R G  E AR+ F  +  K
Sbjct: 276 SILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKK 335

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           +   W+ ++  Y +    K+AL ++  M  +   P +F  S V+ +CASLGAL +G +IH
Sbjct: 336 ELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIH 395

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           +         D +LGTALV+MYAKCG L  A K F+ +  K+V +W+AMI   A HG A+
Sbjct: 396 ECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAE 455

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +A+EL   M  + +  + +T + VL AC+H G +  G+     + Q +GI+ + E+    
Sbjct: 456 EALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGF 515

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           +DLLGRAG+L EAE V+ +MP + +      LLG C+ HG+V  G+ L K ++ +EP+N 
Sbjct: 516 IDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENP 575

Query: 500 --------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         R DDVAK+R+ M+++G+K   G S I+    I+EF  GD S+P+  
Sbjct: 576 GSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNL 635

Query: 546 EIYLMLKKIIEKLK-MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           EI   L+++  ++K  EGY P++  V  D+ +++KE   K+HSEK+A+ FG I + PG+T
Sbjct: 636 EIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGST 695

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+IKNLRVC DCH+  KL SK+  R IIVRD  R+HHF  G CSC D+W
Sbjct: 696 LRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 208/457 (45%), Gaps = 45/457 (9%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKA 142
           E A +VF+ + + N F W S+L  C   N  ++  + +Y EMV  +   + +T  +V  A
Sbjct: 19  EDARQVFDRIKQRNAFSW-SILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAA 77

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-GSKSDVIC 201
           C+     +EG  V     + G   DV V +S I ++A  GC+ +A  +    G+  D+I 
Sbjct: 78  CTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIIS 137

Query: 202 WNALIDGYLKCGD-------------------------IEGA--------------KELF 222
             A+I  Y++ G                          I GA              K + 
Sbjct: 138 VTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHIL 197

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           +S    N    NA+I+ +A+ G  ++++ LF  M+ KD ++W+A+I  YT  G+ K+A  
Sbjct: 198 ESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFS 257

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F+ M      P  +  S +L ACAS   L+ G  +H  +       D  +   L+ M+ 
Sbjct: 258 LFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFT 317

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG L+ A + F  ++ KE+  WN M+   A   +  DA+ L+  M  E   PDR TF+ 
Sbjct: 318 RCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSS 377

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           V+ +CA  G +  G + +       G + +V     +V++  + G LA+A++    +   
Sbjct: 378 VVDSCASLGALREG-KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-N 435

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKIL-LEMEPQN 498
            +   W A++ A  +HG  E    L  ++ L+   QN
Sbjct: 436 KDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQN 472



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 137/253 (54%), Gaps = 15/253 (5%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +I  + +    E+AR++F+ +  ++  +WS +++ Y ++  Y+EALEV+ EM R +I 
Sbjct: 6   NMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEIS 65

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
              + LS VLAAC  L  +++G  +    +      D V+ T+L+ ++AKCG L+ A  V
Sbjct: 66  IDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESV 125

Query: 354 FEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           F  M  M+++ +  AMIG    HG+ D A++ ++KM+ + + PD  T+A +L AC+    
Sbjct: 126 FRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDF 185

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYG------CIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           +  G       + ++    E +H+G       ++ +  + G L +++ +  +M ++ +  
Sbjct: 186 LLDG-------KHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVK-DVV 237

Query: 467 VWEALLGACRKHG 479
            W A++ A   +G
Sbjct: 238 SWNAMIAAYTLYG 250



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 42/348 (12%)

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS-- 224
           D  + +  IQMY        ARQ+ D   + +   W+ L++ Y++    + A E++K   
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 225 ------------------TK-------------------DKNTGSYNAMISGFARFGRFE 247
                             TK                   +K+     ++I  FA+ G  E
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 248 EARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           EA  +F  M   +D I+ +A+I  Y + G    AL+ + +M+   ++P  F  + +L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           +S   L  G  IH H+  +    +  +  AL+ MYAKCG L  +  +F  M +K+V +WN
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI    ++G   DA  LF +M      PD  TF+ +L ACA    ++ G + L      
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG-RMLHVRITA 299

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G D +      ++ +  R G L  A     S+  +   A W  +L A
Sbjct: 300 RGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGA-WNTMLAA 346



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 33/331 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H  I   G  +D  +   L+     +R  + E A + F S+ K  +  WN++L A  
Sbjct: 291 RMLHVRITARGFDRDFAMQNNLISMF--TRCGSLESARRYFYSIEKKELGAWNTMLAAYA 348

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + ++    + LY  M+     P++FT+ +V  +C+   A +EG  +H      G   DV 
Sbjct: 349 QFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVI 408

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           + ++ + MYA  G +  A++  D  S  DV+ W+A+I    + G  E A EL        
Sbjct: 409 LGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQG 468

Query: 227 -DKNTGSYNAMISGFARFGRFEEARKLFNEMN-----DKDEITWSAIIDGYTKDGYYKEA 280
             +N  + ++++   +  GR  E    F  ++     ++DE      ID   + G+ KEA
Sbjct: 469 IAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEA 528

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------ 334
             V + M         F +S V     +L  L  G  +H  V+R       ++       
Sbjct: 529 EHVLHTM--------PFKVSFV-----ALVTLLGGCKVHGDVRRGKALTKRIVALEPENP 575

Query: 335 ---TALVDMYAKCGRLDMAWKVFEDMKMKEV 362
                L +MYA  GR D   K+   M+ K V
Sbjct: 576 GSYVLLNNMYAAAGRWDDVAKLRRYMRKKGV 606



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 1/151 (0%)

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           D  L   ++ MY KC   + A +VF+ +K +  F+W+ ++     +    +A+E++ +M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           R+++  D  T + VL+AC     ++ G       +++ G + +V     ++ L  + G L
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEEL-GFEKDVVVATSLIHLFAKCGCL 119

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            EAE V  SM    +     A++GA  +HG+
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGK 150


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/629 (34%), Positives = 314/629 (49%), Gaps = 83/629 (13%)

Query: 40   TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
            + C+ S Q  +     IL+SG ++   +   L+  H   R    E A  VFN +   +V 
Sbjct: 549  SSCYCS-QEAQVLRMCILESG-YRSACLETALISMHGRCR--ELEQARSVFNEMDHGDVV 604

Query: 100  VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
             W +++ A  E+ +   V +L+  M      P+KFT  T    C  +     G  +HA V
Sbjct: 605  SWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV 664

Query: 160  VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
             + GL  D+ V+                               NAL++ Y  CGD     
Sbjct: 665  TEIGLEADIAVE-------------------------------NALLNMYSNCGD----- 688

Query: 220  ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                      + EA   F  M  +D ++W+ +   Y + G  KE
Sbjct: 689  --------------------------WREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 280  ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            A+ +F +MQ + +KP K   S  L        +  G   H     + +  D  + T LV 
Sbjct: 723  AVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVK 782

Query: 340  MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            +YAKCG+LD A  +F       V   NA+IG LA HG +++A+++F+KMQ+E +RPD  T
Sbjct: 783  LYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 400  FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
               ++SAC HAGM++ G  +   M++ +GI P +EHY C VDLLGRAG L  AE++I  M
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 460  PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
            P E N  VW +LLG C+  G+ E GER  + +LE++P N               +  D  
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 506  KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
              RK M +  +K  PG S  ++   +HEF  GD SHP+  EIY++L K+   ++  GY  
Sbjct: 963  VDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEA 1022

Query: 566  NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +      D+++E KE A  YHSE++AIAFG I T P  T++++KNLRVC DCH+ATK IS
Sbjct: 1023 DKG---LDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYIS 1079

Query: 626  KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             V  R+IIVRD +R+HHF NG CSC D W
Sbjct: 1080 MVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 234/527 (44%), Gaps = 55/527 (10%)

Query: 33  TILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           T++ ILN    +   +   +  H  I +SG+ +D  +   ++  +A   F  F  A  VF
Sbjct: 336 TLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGF--FSAAWAVF 393

Query: 91  NSVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
             +  K +V  WN++L A  +     +V++ +  M+     PNK ++  +  ACS +EA 
Sbjct: 394 RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEAL 453

Query: 150 KEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNALI 206
             G ++H+ ++ +     +  V +  + MY   G +++A  +  +       ++ WN ++
Sbjct: 454 DFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVML 513

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSY--------------------------------- 233
             Y +    + +KE F +  +   G                                   
Sbjct: 514 GAYAQN---DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYR 570

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                 A+IS   R    E+AR +FNEM+  D ++W+A++    ++  +KE   +F  MQ
Sbjct: 571 SACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQ 630

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + + P KF L+  L  C +   L  G  IH  V    +  D  +  AL++MY+ CG   
Sbjct: 631 LEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWR 690

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A   FE MK +++ +WN M    A  G A +A+ LF +MQ E ++PD++TF+  L+   
Sbjct: 691 EALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSG 750

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
            + ++  G +    +    G+D +V     +V L  + G L EA  +      +    + 
Sbjct: 751 GSALVSDG-KLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRG-ACDWTVVLL 808

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG 515
            A++GA  +HG   F E   K+  +M+ +  R  DVA +  ++   G
Sbjct: 809 NAIIGALAQHG---FSEEAVKMFWKMQQEGVR-PDVATLVSIISACG 851



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 210/476 (44%), Gaps = 56/476 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K AH +I  +G  Q  ++   L+  +   R  + E A  +F+ + + NV  W +++ A  
Sbjct: 45  KHAHELIANAGLEQHLFLGNCLINMYV--RCGSLEEAHAIFSKMEERNVVSWTALISANA 102

Query: 110 EHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL---- 164
           +     R  +L+  M+   S  PN +T   +  AC+ +     G  +HA + + GL    
Sbjct: 103 QCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERAS 162

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------- 211
                V ++ I MYA  G +  A  +     + DV+ W A+   Y +             
Sbjct: 163 TTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFR 222

Query: 212 --------------------CGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFE 247
                               C  +     L     + + G    + NA+I+ + + G +E
Sbjct: 223 EMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWE 282

Query: 248 EARKLFNEMNDKDE---ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
            A  +F  M  + E   ++W+A+I    + G + +A+ +F  ++ + ++P    L  +L 
Sbjct: 283 GAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILN 342

Query: 305 ACASLGALDQGI--WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-E 361
           A A+ G +D G     H  +  +    D V+G A++ MYAKCG    AW VF  ++ K +
Sbjct: 343 ALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCD 401

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID--RGLQA 419
           V +WN M+G           +  F  M    + P++++F  +L+AC+++  +D  R + +
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS 461

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV-WEALLGA 474
           L   ++   ++  V     +V + G+ G ++EAE V   MP+   + V W  +LGA
Sbjct: 462 LILTRRRDYVESSVATM--LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 179/409 (43%), Gaps = 55/409 (13%)

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           R +   S  V VD   +   Y  + ++C  +    +G   H  +   GL   + + +  I
Sbjct: 8   RQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLI 67

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----------- 224
            MY   G + +A  I     + +V+ W ALI    +CG    A  LF++           
Sbjct: 68  NMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNS 127

Query: 225 ------------TKDKNTGSY---------------------NAMISGFARFGRFEEARK 251
                       ++D   G                       NAMI+ +A+ G  E+A  
Sbjct: 128 YTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIA 187

Query: 252 LFNEMNDKDEITWSAIIDGYTKDG-YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +F  + +KD ++W+A+   Y ++  +Y +AL +F EM    + P        L AC SL 
Sbjct: 188 VFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL- 246

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE---VFTWNA 367
               G W+H  +   S+  D +   AL++MY KCG  + A+ VF+ M  ++   + +WNA
Sbjct: 247 --RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNA 304

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI      GR  DA+ +F +++ E MRP+ +T   +L+A A +G +D G  A  +  +++
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFG-AARGFHGRIW 362

Query: 428 --GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             G   +V     I+ +  + G+ + A  V   +  + +   W  +LGA
Sbjct: 363 ESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 181/409 (44%), Gaps = 55/409 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK---CHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +  HA+I + G  +    + TLV     +  ++  + E A+ VF ++ + +V  W ++  
Sbjct: 147 RSIHAMIWELG-LERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAG 205

Query: 107 ACLEHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           A  +    +   + ++ EM+     PN  T+ T   AC+   + ++G  +H+ + +  L 
Sbjct: 206 AYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLG 262

Query: 166 GDVHVKSSGIQMYACFGCVNKARQI---LDDGSKSDVICWNALIDGYLKCGD-------- 214
            D    ++ I MY   G    A  +   +    + D++ WNA+I   ++ G         
Sbjct: 263 FDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIF 322

Query: 215 ----IEGAK----------------------------ELFKSTKDKNTGSYNAMISGFAR 242
               +EG +                             +++S   ++    NA+IS +A+
Sbjct: 323 RRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK 382

Query: 243 FGRFEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            G F  A  +F  +  K D I+W+ ++        + + +  F+ M    I P K     
Sbjct: 383 CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 302 VLAACASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM- 359
           +L AC++  ALD G  IH  +  R    V++ + T LV MY KCG +  A  VF++M + 
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLP 502

Query: 360 -KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
            + + TWN M+G  A + R+ +A     +M +  + PD ++F  VLS+C
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC 551



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 150/330 (45%), Gaps = 47/330 (14%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-I 292
           N +I+ + R G  EEA  +F++M +++ ++W+A+I    + G +  A  +F  M  +   
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSA 123

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHV-----KRNSICVDAVLGTALVDMYAKCGRL 347
            P  + L  +L ACA+   L  G  IH  +     +R S     V G A+++MYAKCG L
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLV-GNAMINMYAKCGSL 182

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSA 406
           + A  VF  +  K+V +W AM G  A   R   DA+ +F +M  + + P+ ITF   L A
Sbjct: 183 EDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGA 242

Query: 407 CAHAGMIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP- 460
           C         L+  T++  +      G DP   +   ++++ G+ G    A  V  +M  
Sbjct: 243 CT-------SLRDGTWLHSLLHEASLGFDPLASN--ALINMYGKCGDWEGAYSVFKAMAS 293

Query: 461 -MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
             E +   W A++ A      VE G              R  D +A  R+L  E G++ N
Sbjct: 294 RQELDLVSWNAMISA-----SVEAG--------------RHGDAMAIFRRLRLE-GMRPN 333

Query: 520 PGSSMIDVNGVIH---EFRTGDGSHPQVKE 546
             + +  +N +     +F    G H ++ E
Sbjct: 334 SVTLITILNALAASGVDFGAARGFHGRIWE 363


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/631 (32%), Positives = 342/631 (54%), Gaps = 54/631 (8%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTY 136
           ++ +   +A  +F+ + + NV  W++++   L +    +VI L  +M+   +  PN++  
Sbjct: 77  AKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYIL 136

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
                +C      +EG Q H  ++K G     +V+++ + MY+    V  A  + ++   
Sbjct: 137 AIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPV 196

Query: 197 SDVICWNALI-----DGYLKCG-----------------DIEGAKELFKSTKDKNTGSY- 233
           +D++ +N+++     +GYL+ G                     A  L  S KD   G + 
Sbjct: 197 NDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHV 256

Query: 234 ----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                           +A+I+ + + G+   AR +F+ +  ++ + W+A++    ++G +
Sbjct: 257 HGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCF 316

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           +EAL +F++M+++ +K  +F  + +L ACA L A   G  +H H +++      ++G AL
Sbjct: 317 EEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNAL 376

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           ++MYAK G ++ A KVF DM  +++ TWNAMI G + HG    A+ +F  M   +  P+ 
Sbjct: 377 INMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNY 436

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +TF  VLSAC H G++  G   L ++ + +G+ P +EHY CIV LL + G L EA   + 
Sbjct: 437 VTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMR 496

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDD 503
           + P++ +   W  LL AC  H     G  + + +LEM+P +              +R D 
Sbjct: 497 TAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDG 556

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           V K+RKLM+++ IK  PG S I++  V H F + D  HP   + Y  +K+++  +K  GY
Sbjct: 557 VVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGY 616

Query: 564 SPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKL 623
           +P+   VL D+++E+KE    YHSEKLAIA+G +     A+I VIKNLR+C+DCHSA +L
Sbjct: 617 TPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRL 676

Query: 624 ISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           ISKV  R I+VRD  R+HHFR+G+CSC D+W
Sbjct: 677 ISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 180/384 (46%), Gaps = 46/384 (11%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHV--KSSGIQMYACFGCVNKARQILDDGSK 196
           + K  + T+  K G  +H+H++      +  +   +S I  YA    V+ A  + D   +
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPE 94

Query: 197 SDVICWNALIDGYL---------------------------------KC---GDIEGAKE 220
            +V+ W+AL+ GYL                                  C   G +E  ++
Sbjct: 95  RNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQ 154

Query: 221 ----LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
               L K+    +    NA++S +++    ++A  ++NE+   D + +++I+    ++GY
Sbjct: 155 CHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGY 214

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +E LEV   M  + +K  K       + CASL  L  G+ +H  +  + +  DA + +A
Sbjct: 215 LREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSA 274

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           +++MY KCG+  MA  VF+ ++ + V  W A++     +G  ++A+ LF KM++E ++ +
Sbjct: 275 IINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSN 334

Query: 397 RITFACVLSACAHAGMIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
             T+A +L+AC  AG+  R   +L +   +  G    V     ++++  ++G +  A++V
Sbjct: 335 EFTYAVLLNAC--AGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKV 392

Query: 456 ISSMPMEPNAAVWEALLGACRKHG 479
            S M M  +   W A++     HG
Sbjct: 393 FSDM-MHRDIITWNAMICGFSHHG 415



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 182/405 (44%), Gaps = 49/405 (12%)

Query: 14  LKPEEISATNIPTSEFSQKTILDILNTKC--HTSWQHLKQAHAVILKSGHFQDHYVSGTL 71
           L  + IS  N+  +E+    IL I  + C      +  +Q H ++LK+G    +YV   L
Sbjct: 119 LLKDMISEGNVSPNEY----ILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNAL 174

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           V  +  S+ S  + A+ V+N V   ++  +NS+L + +E+      + +   MV    K 
Sbjct: 175 VSMY--SKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKW 232

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           +K T+   F  C+  +  + G+ VH  ++ + +  D +V S+ I MY   G    AR + 
Sbjct: 233 DKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVF 292

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY------------------ 233
           D     +V+ W A++    + G  E A  LF   + +N  S                   
Sbjct: 293 DGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARR 352

Query: 234 ---------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                                NA+I+ +A+ G  E A+K+F++M  +D ITW+A+I G++
Sbjct: 353 NGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFS 412

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSICVDA 331
             G  K+AL VF +M   +  P     + VL+AC  LG + +G  ++H  +K+  +    
Sbjct: 413 HHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGL 472

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH 375
              T +V + +K G+L+ A        +K +V  W  ++    +H
Sbjct: 473 EHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVH 517



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 149/313 (47%), Gaps = 14/313 (4%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKI 292
           N++I+ +A+  +   A  LF+ M +++ ++WSA++ GY  +G+  + + +  +M     +
Sbjct: 70  NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 129

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P +++L+  +++C   G +++G   H  + +        +  ALV MY+KC  +  A  
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMG 189

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           V+ ++ + ++  +N+++  L  +G   + +E+   M  E ++ D++TF    S CA    
Sbjct: 190 VWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKD 249

Query: 413 IDRGLQALTYMQQMYGIDPEVEHY--GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           +  GL       +M   D E + Y    I+++ G+ G    A  V   +    N  +W A
Sbjct: 250 LRLGLHV---HGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGL-QSRNVVLWTA 305

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMI----D 526
           ++ +C ++G   F E L  +  +ME +N + ++      L    G+      S++    +
Sbjct: 306 VMASCFQNG--CFEEAL-NLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSE 362

Query: 527 VNGVIHEFRTGDG 539
            +G  H    G+ 
Sbjct: 363 KSGFKHHVMVGNA 375



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 15/321 (4%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
             H  +L S    D YVS  ++  +     S   +A  VF+ +   NV +W +V+ +C +
Sbjct: 255 HVHGKMLTSDVECDAYVSSAIINMYGKCGKS--LMARGVFDGLQSRNVVLWTAVMASCFQ 312

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      ++L+S+M   + K N+FTY  +  AC+   A + G  +H H  K+G    V V
Sbjct: 313 NGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMV 372

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTK 226
            ++ I MYA  G +  A+++  D    D+I WNA+I G+   G  + A    +++  + +
Sbjct: 373 GNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEE 432

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEAL 281
             N  ++  ++S     G  +E     + +  +  +      ++ I+   +K G   EA 
Sbjct: 433 HPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEAR 492

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
              N M+   +K        +L AC        G W+ + V       D    T L ++Y
Sbjct: 493 ---NFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPN-DVGTYTLLSNIY 548

Query: 342 AKCGRLDMAWKVFEDMKMKEV 362
           AK  R D   KV + M+ K++
Sbjct: 549 AKEKRWDGVVKVRKLMRDKKI 569


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/443 (43%), Positives = 273/443 (61%), Gaps = 52/443 (11%)

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           ++N  S+N+M+SGF + G  EEA  LF+EM  +D ++W++++  Y + G   EAL +F++
Sbjct: 3   ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 62

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           MQ                                     ++ V++++GTALVDMYAKCG+
Sbjct: 63  MQ-------------------------------------AVGVNSIVGTALVDMYAKCGK 85

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           + +A +VF  M+ K+V  WN +I G+A+ G   +A +LF +M+   + P+ ITF  +LSA
Sbjct: 86  ISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSA 145

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+HAGM+D G + L  M   YGI+P+VEHYGC++DLL RAG L EA E+I +MPMEPN  
Sbjct: 146 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPC 205

Query: 467 VWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMK 512
              ALL  CR HG  E GE +GK L+ ++P                ++ DD  K+R LMK
Sbjct: 206 ALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMK 265

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVL 571
             GI   PG S+I++ G++H F  GD SHP+  +IY  L +I  +LK   GYS ++   L
Sbjct: 266 VNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNGL 325

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D++EE+KE A   HSEKLAIA+G ++ D    IR++KNLRVC DCH  TKLISKV+  +
Sbjct: 326 LDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGE 385

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRDR R+HHF +G+CSC DFW
Sbjct: 386 IIVRDRNRFHHFEDGECSCLDFW 408



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 18/206 (8%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY--NAMISG 239
           G V +A  +  +    DV+ WN+++  Y +CG    A  LF   +     S    A++  
Sbjct: 20  GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQAVGVNSIVGTALVDM 79

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G+   A ++FN M  KD + W+ II G    G+ KEA ++F EM+   ++P     
Sbjct: 80  YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITF 139

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT--------ALVDMYAKCGRLDMAW 351
             +L+AC+  G +D+G  + D       C+ +  G          ++D+ A+ G L+ A 
Sbjct: 140 VAMLSACSHAGMVDEGQKLLD-------CMSSSYGIEPKVEHYGCVIDLLARAGLLEEAM 192

Query: 352 KVFEDMKMK-EVFTWNAMIGGLAMHG 376
           ++   M M+       A++ G  +HG
Sbjct: 193 ELIGTMPMEPNPCALGALLEGCRIHG 218



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 60/303 (19%)

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM--VGVD 128
            VKC       N E A  +F+ +   +V  WNS+L    +  +P   ++L+ +M  VGV+
Sbjct: 16  FVKC------GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQAVGVN 69

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           S                                        V ++ + MYA  G ++ A 
Sbjct: 70  SI---------------------------------------VGTALVDMYAKCGKISLAT 90

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFG 244
           Q+ +     DV+ WN +I G    G ++ A++LFK  K    + N  ++ AM+S  +  G
Sbjct: 91  QVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAG 150

Query: 245 RFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
             +E +KL + M+    I      +  +ID   + G  +EA+E+   M    ++P    L
Sbjct: 151 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNPCAL 207

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L  C   G  + G  +   +     C        L ++YA   + D A KV   MK+
Sbjct: 208 GALLEGCRIHGNFELGEMVGKRLINLQPCHSGRY-ILLSNIYAAAKKWDDARKVRNLMKV 266

Query: 360 KEV 362
             +
Sbjct: 267 NGI 269


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/671 (32%), Positives = 346/671 (51%), Gaps = 69/671 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H  ++K+G   D +V+ +LV  +A  R    + A  +F+ + + NV  W +++    
Sbjct: 98  RALHGHMVKTGTSADMFVATSLV--NAYMRCGASQDARSLFDQMPEKNVVTWTALITGYT 155

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +++    + ++ EM+     P+ +T   +  ACS +     G QVH + +K        
Sbjct: 156 VNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITS 215

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI----------------------D 207
           + +S  +MYA  G +  A +        +VI W  +I                      D
Sbjct: 216 IGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMD 275

Query: 208 GYLK-----------CG---DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G L            CG   D+   K++    FK     N    N+ +  + R G  +EA
Sbjct: 276 GVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEA 335

Query: 250 RKLFNEMNDKDEITWSAIIDGYT------KDGYYK-----EALEVFNEMQRDKIKPRKFV 298
            + F EM+D   ITW+A+I GY       KD  +      +AL+VF  ++R  +KP  F 
Sbjct: 336 MRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFT 395

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S +L+ C+S+ AL+QG  IH    +     D V+ +ALV+MY KCG ++ A K F +M 
Sbjct: 396 FSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMS 455

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           ++ + TW +MI G + HGR  +AI+LF  M+   +RP+ ITF CVLSAC++AG+ ++   
Sbjct: 456 IRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEH 515

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M++ Y I+P V+HYGC+VD+  R G L +A   I     EPN A+W +L+  CR H
Sbjct: 516 YFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSH 575

Query: 479 GEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSM 524
           G +E        L+E+ P+              N R  DVA++RKLMK+ G+      S 
Sbjct: 576 GNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSW 635

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP- 583
           I +   ++ F+  D +H    E+Y +L+ ++EK K  GY P  S  L D ++++K  A  
Sbjct: 636 ITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEPYQSAELSDSEDDKKPPAGS 695

Query: 584 -KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
            ++HSE+LA+A G + T PGAT+RV KN+ +C DCHS+ K  S +  R+I+VRD  R H 
Sbjct: 696 VRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVVRDSKRLHK 755

Query: 643 FRNGKCSCNDF 653
           F++G+CSC DF
Sbjct: 756 FKDGRCSCGDF 766



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 10/245 (4%)

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA----LEVFNEMQ--RDK 291
           SGF   G  +  R   + ++  D+  W+       ++G   EA    L+V   M   R+ 
Sbjct: 14  SGFPAAGGADSRRPPPSSVSAADKNNWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREG 73

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
              +  +   +L  C   G+L     +H H+ +     D  + T+LV+ Y +CG    A 
Sbjct: 74  KTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDAR 133

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            +F+ M  K V TW A+I G  ++ +  +A+E+F +M      P   T   +L+AC+ + 
Sbjct: 134 SLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASN 193

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYG-CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
             D G Q   Y  +   +   +   G  +  +  ++G L  A      +P + N   W  
Sbjct: 194 NADLGSQVHGYTIKYRALS--ITSIGNSLCRMYAKSGSLESAMRAFRMVP-DKNVITWTT 250

Query: 471 LLGAC 475
           ++ AC
Sbjct: 251 MISAC 255


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 318/587 (54%), Gaps = 65/587 (11%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           EE S  N+      Q+    +L T C T  + LKQ H  I+ +G  Q +++   L+  + 
Sbjct: 4   EEASPANLTGLRALQQHFFSLLQT-CDTI-KKLKQIHTQIIVNGFSQKNFLLVKLLSFYI 61

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
            S   N   A KVF  +  P+  VWN ++R   +   P +++ LY+ MV  +++PN+FTY
Sbjct: 62  TS--GNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTY 119

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG---CVNKARQILDD 193
             +   C+ +   +EG QVH  VV NG C +V V++S + +YA  G    V KAR++ D+
Sbjct: 120 SFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDE 179

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
               +++ WN+L+ GY++CGD++GA+ +F    ++N  S+  MI+G A+ GR ++A    
Sbjct: 180 IVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA---- 235

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
                                      L +F+EM+R  +K  +  L   L+ACA LG L 
Sbjct: 236 ---------------------------LHLFHEMRRAGVKLDQVALVAALSACAELGDLK 268

Query: 314 QGIWIHD------HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            G WIH       H     + V   L  +L+ MYA CG +D A+KVF  M+ +   +W +
Sbjct: 269 LGTWIHSYIDERLHAGNQPLLVS--LNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 326

Query: 368 MIGGLAMHGRADDAIELFFKMQR---EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           MI G A  G A++A+ +F  MQR   ++ RPD ITF  VL AC+HAG +D+G      M 
Sbjct: 327 MITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMN 386

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           + +GI P +EHYGC+VDLL RAG+L EA  +I SMPM+PN AVW ALLG CR H   E  
Sbjct: 387 KKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELA 446

Query: 485 ERLG-KILLEMEPQN---------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
             +  K+ LE++P                 +R  DVA +R+ M E G++   G S + +N
Sbjct: 447 SHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 506

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           GV+H+F  GD +H     +Y ML KI  + K+EGY  + S+VL D++
Sbjct: 507 GVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVLLDVE 553


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/702 (32%), Positives = 373/702 (53%), Gaps = 71/702 (10%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA-HAVILKSGHFQDHYVSGTLVKCH 75
           E++  T  P     + T++ +L      +W    +A H + +KSG      VS  LV  +
Sbjct: 155 EDLGGTAAP----DEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMY 210

Query: 76  AN-SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV----GVDSK 130
           A     ++ E A          NV  WN +L     + E      L  EM     GV + 
Sbjct: 211 AKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPA- 269

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL--CGDVHVKSSGIQMYACFGCVNKAR 188
            ++ T  +V   CS      +  ++HA VV+ GL   GD+ V ++ I  Y   GC+  A 
Sbjct: 270 -DEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDM-VPNALIAAYGRCGCLLHAC 327

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK---------------------- 226
           ++ D      V  WNALI  + + G+   A ELF+                         
Sbjct: 328 RVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNL 387

Query: 227 ------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
                             +K++    +++S + + GR   AR LF+ + +KDE++W+ +I
Sbjct: 388 KHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMI 447

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIK--PRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
            GY+++G   E+L++F EMQ  K    P     +  L AC+ L A+  G  +H    +  
Sbjct: 448 AGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKAD 507

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           +C D+ L ++++DMY+KCG +D A   F+ +K K+  +W  MI G A++GR  +A+ L+ 
Sbjct: 508 LCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYD 567

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           KM RE M PD  T+  +L AC HAGM++ GL     M+ +  I+ ++EHY C++ +L RA
Sbjct: 568 KMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRA 627

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------- 497
           G  A+A  ++  MP EP+A +  ++L AC  HGEVE G+++   LLE+EP          
Sbjct: 628 GRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLAS 687

Query: 498 -----NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                +R+ D++ K+RK++++ G+   PG S ID+ G ++ F  G+ S P++ ++  M  
Sbjct: 688 NMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWY 747

Query: 553 KIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
            + EK++  GY+P+++ +L +++EEEK  A ++HSEK AIAFG + T     +RV KN+R
Sbjct: 748 SLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIR 807

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +C+DCH+A KLISKV  R+I+VRD+ R+HHFR+G CSC D+W
Sbjct: 808 MCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 180/411 (43%), Gaps = 57/411 (13%)

Query: 50  KQAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q HAV  K G    D +V  +LV  +   R    + A KVF  +   N+  WN+++ A 
Sbjct: 83  RQVHAVAAKLGLADGDPFVGNSLVSMYG--RCGRVDDAEKVFEGMAGRNLVSWNALMAAV 140

Query: 109 LEHNEPWRVISLYS---EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               +P R + L+    E +G  + P++ T  TV   C+     + G  VH   VK+G  
Sbjct: 141 ---ADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWD 197

Query: 166 GDVHVKSSGIQMYACFGCVNKARQIL---DDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
               V +  + MYA  G +  A         G+  +V+ WN ++ GY + G+   A  L 
Sbjct: 198 AAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLL 257

Query: 223 KSTKDKNTG------------------------------------------SYNAMISGF 240
           +  + +  G                                            NA+I+ +
Sbjct: 258 REMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAY 317

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVL 299
            R G    A ++F+ +  K   +W+A+I  + ++G    A+E+F EM      KP  F +
Sbjct: 318 GRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSI 377

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L AC +L  L  G   H  + RN +  D+ +  +L+ +Y +CGR  +A  +F+ ++ 
Sbjct: 378 GSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEE 437

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR--PDRITFACVLSACA 408
           K+  +WN MI G + +G   ++++LF +MQ +K    P  +     L AC+
Sbjct: 438 KDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACS 488



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 141/329 (42%), Gaps = 57/329 (17%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC-GDVHVKSSGIQMYACFGCVNKARQ 189
           P++FT P   K+C       +G QVHA   K GL  GD  V +S + MY   G V+ A +
Sbjct: 65  PDRFTLPPALKSCR----GDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEK 120

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--------------------------- 222
           + +  +  +++ WNAL+       D     ELF                           
Sbjct: 121 VFEGMAGRNLVSWNALMAAV---ADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAA 177

Query: 223 ---------------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM---NDKDEITW 264
                          KS  D      N ++  +A+ G   +A   F E      ++ ++W
Sbjct: 178 LAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSW 237

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           + ++ GY ++G    A  +  EMQ ++  +   +  +  VL  C+ L  L +   +H  V
Sbjct: 238 NVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFV 297

Query: 323 KRNSICVDA-VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
            R  + +   ++  AL+  Y +CG L  A +VF+ +  K V +WNA+IG  A +G A  A
Sbjct: 298 VRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAA 357

Query: 382 IELFFKMQRE-KMRPDRITFACVLSACAH 409
           IELF +M      +PD  +   +L AC +
Sbjct: 358 IELFREMTNACGQKPDWFSIGSLLLACGN 386



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 19/244 (7%)

Query: 264 WSAIIDGYTKDGYYKEALEVFNEM--QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           W+ ++   ++ G + +AL +   +    D + P +F L   L +C      D G  +H  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 322 VKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
             +  +   D  +G +LV MY +CGR+D A KVFE M  + + +WNA++  +A   R   
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRR--- 145

Query: 381 AIELFFKMQRE---KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
            +ELF     +      PD  T   VL  CA     + G +A+  +    G D       
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRVSN 204

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEP--NAAVWEALLGACRKHGEVEFGERLGKILLEME 495
            +VD+  + G +A+AE      P     N   W  +LG   ++GE   G   G +L EM+
Sbjct: 205 VLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEA--GAAFG-LLREMQ 261

Query: 496 PQNR 499
            + R
Sbjct: 262 MEER 265


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/664 (32%), Positives = 351/664 (52%), Gaps = 65/664 (9%)

Query: 51   QAHAVILKSGHFQDHYVSGT-LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
            + HA +++SG        G  L+  +A     N   A  VF  +   +   WNS++    
Sbjct: 409  EVHAFLIRSGLLNAQIAIGNGLINMYAKCGAIND--ACVVFRLMDNKDSVTWNSMITGLD 466

Query: 110  EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            ++ +    +  + EM   +  P+ FT  +   +C+       G Q+H   +K GL  DV 
Sbjct: 467  QNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVS 526

Query: 170  VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD------IEGAKELFK 223
            V ++ + +Y   G V + ++        D + WN+LI G L   +      +E    + +
Sbjct: 527  VSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-GALADSEPSMLEAVESFLVMMR 585

Query: 224  STKDKNTGSY-----------------------------------NAMISGFARFGRFEE 248
            +  D N  ++                                   NA+++ + + G    
Sbjct: 586  AGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGY 645

Query: 249  ARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
               +F+ M+D+ DE++W+++I GY  +    +A+++   M +   +   F  + VL+ACA
Sbjct: 646  CENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACA 705

Query: 308  SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            ++  L++G+ +H    R  +  D V+G+ALVDMYAKCGR+D A + FE M  + +++WN+
Sbjct: 706  TVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNS 765

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            MI G A HG    +++LF +M+ +   PD +TF  VLSAC+HAG+++ G      M ++Y
Sbjct: 766  MISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIY 825

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA-CRKHGE-VEFGE 485
            G+ P +EH+ C+VDLLGR G L + E+ ++ MP++PN  +W  +LGA CR +G     G 
Sbjct: 826  GLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGR 885

Query: 486  RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
            R  ++LLEMEP N               + DDVAK R  M++  +K   G S + +   +
Sbjct: 886  RAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGV 945

Query: 532  HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
            H F  GD SHP+   IY  LK++  K+++ GY P +   L+D++ E KE    YHSEK+A
Sbjct: 946  HVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIA 1005

Query: 592  IAFGFINTDPG-ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
            +A  F+ T P    IR++KNLRVC DCHSA K IS++ +R I++RD  R+HHF NGKCSC
Sbjct: 1006 VA--FVLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSC 1063

Query: 651  NDFW 654
             DFW
Sbjct: 1064 GDFW 1067



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 219/479 (45%), Gaps = 60/479 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  + K+G   D ++  TL+  +A  R  +     KVF+ +   N+  W+ ++    
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYA--RVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI--TEADKEGVQVHAHVVKNGLCGD 167
            +  P     L+ +MV     PN + + +V +AC        K G+Q+H  + K     D
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND 210

Query: 168 VHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           V   +  I MY    G V+ AR+  D     +++  N++I  Y + GD   A ++F + +
Sbjct: 211 VTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQ 270

Query: 227 DK------------------------NTGSY---------------------NAMISGFA 241
            +                        N+G                       +A++SGFA
Sbjct: 271 KEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFA 330

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLS 300
           + G    A+ +F +M+ ++ ++ + +I G  +    +EA+E+F EM+   ++ P  +++ 
Sbjct: 331 KAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI- 389

Query: 301 CVLAACASLGALD----QGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFE 355
            +L A      L+    +G  +H  + R+ +      +G  L++MYAKCG ++ A  VF 
Sbjct: 390 -ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR 448

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M  K+  TWN+MI GL  + +  +A++ F +M+R ++ P   T    LS+CA  G I  
Sbjct: 449 LMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISV 508

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           G Q L       G+D +V     ++ L G  GY+ E ++  S M ++ +   W +L+GA
Sbjct: 509 GEQ-LHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGA 565



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 123/563 (21%), Positives = 217/563 (38%), Gaps = 112/563 (19%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+    +  +E++  +++    +  ++    L+Q    + KSG   D YV   LV   A
Sbjct: 271 KEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFA 330

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKF- 134
            +   +   A  +F  +   NV   N ++   +        + L+ EM   V+  PN + 
Sbjct: 331 KA--GSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYM 388

Query: 135 TYPTVFKACSITEADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
              T F    + E  K +G +VHA ++++GL                             
Sbjct: 389 IILTAFPEFHVLENGKRKGSEVHAFLIRSGLL---------------------------- 420

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
              + +   N LI+ Y KCG I  A  +F+   +K++ ++N+MI+G  +  +F EA K F
Sbjct: 421 --NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTF 478

Query: 254 NEMN---------------------------------------DKDEITWSAIIDGYTKD 274
            EM                                        D D    +A++  Y + 
Sbjct: 479 QEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGEC 538

Query: 275 GYYKE--------------------------------ALEVFNEMQRDKIKPRKFVLSCV 302
           GY KE                                A+E F  M R    P +     +
Sbjct: 539 GYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITI 598

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKE 361
           LAA +SL   + G  IH  V + ++  D  +  AL+  Y KCG +     +F  M   ++
Sbjct: 599 LAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQD 658

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             +WN+MI G   +     A+++ + M ++  R D  TFA VLSACA    ++RG++   
Sbjct: 659 EVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHG 718

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
              +   ++ ++     +VD+  + G +  A      MP   N   W +++    +HG  
Sbjct: 719 CSVRA-CLESDIVIGSALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGH- 775

Query: 482 EFGERLGKILLEMEPQNRRCDDV 504
             G +   +  +M+ Q    D V
Sbjct: 776 --GTKSLDLFAQMKLQGPLPDHV 796



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 16/286 (5%)

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           +LFK+    +    N +I+ +AR G     RK+F+EM  ++ ++WS +I GYT++    E
Sbjct: 98  QLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNE 157

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLG--ALDQGIWIHDHVKRNSICVDAVLGTAL 337
           A E+F +M  D   P  +    V+ AC   G   L  G+ IH  + +     D      L
Sbjct: 158 ACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVL 217

Query: 338 VDMYAKC-GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM--- 393
           + MY    G +D A + F+ +  + + + N+MI      G A  A ++F  MQ+E M   
Sbjct: 218 ISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDG 277

Query: 394 -RPDRITFACVLSAC---AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            +P+  TF  ++SA    A++G++   L+ L    +  G   ++     +V    +AG +
Sbjct: 278 LKPNEYTFGSLISATCSLANSGLVL--LEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSI 335

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
             A+ +   M      ++   ++G  R+    + GE   ++ +EM+
Sbjct: 336 GYAKNIFQKMSYRNVVSLNGLIIGLVRQ----KRGEEAVELFMEMK 377



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 146/320 (45%), Gaps = 55/320 (17%)

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
             K+  ++H  + KNG   D+ + ++ I +YA  G +   R++ D+    +++ W+ LI 
Sbjct: 88  GSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLIS 147

Query: 208 GYLKCGDIEGAKELFKSTKD-----------------KNTGSY----------------- 233
           GY +      A ELF+                     +  G Y                 
Sbjct: 148 GYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQY 207

Query: 234 -------NAMISGFAR-FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                  N +IS +    G  + AR+ F+ +  ++ ++ +++I  Y + G    A ++F+
Sbjct: 208 VNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFS 267

Query: 286 EMQR----DKIKPRKFVLSCVLAACASLGALDQGIWIHDH----VKRNSICVDAVLGTAL 337
            MQ+    D +KP ++    +++A  SL   + G+ + +     V+++    D  +G+AL
Sbjct: 268 TMQKEVMGDGLKPNEYTFGSLISATCSLA--NSGLVLLEQLLTRVEKSGFLHDLYVGSAL 325

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPD 396
           V  +AK G +  A  +F+ M  + V + N +I GL    R ++A+ELF +M+   ++ P+
Sbjct: 326 VSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN 385

Query: 397 RITFACVLSACAHAGMIDRG 416
             ++  +L+A     +++ G
Sbjct: 386 --SYMIILTAFPEFHVLENG 403



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 174/413 (42%), Gaps = 77/413 (18%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCH 75
           +E+  T +  S F   T++  L++     W  + +Q H   LK G   D  VS  L+  +
Sbjct: 479 QEMRRTELYPSNF---TMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALY 535

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNK 133
               +   +   K F+ +   +   WNS++ A L  +EP  + ++ S +V + +   PN+
Sbjct: 536 GECGY--VKECQKAFSLMLDYDHVSWNSLIGA-LADSEPSMLEAVESFLVMMRAGWDPNR 592

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG-------CVNK 186
            T+ T+  A S     + G Q+HA V+K  +  D  ++++   + AC+G       C N 
Sbjct: 593 VTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENA---LLACYGKCGDMGYCENI 649

Query: 187 ARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL--FKSTKDKNTGSY----------- 233
             ++ D   + D + WN++I GY+    +  A ++  F   K +    +           
Sbjct: 650 FSRMSD---RQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACAT 706

Query: 234 --------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
                                     +A++  +A+ GR + A + F  M  ++  +W+++
Sbjct: 707 VATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSM 766

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           I GY + G+  ++L++F +M+     P       VL+AC+  G +++G    D +     
Sbjct: 767 ISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSE--- 823

Query: 328 CVDAVLGTA--------LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGG 371
               + G A        +VD+  + G L+        M +K  V  W  ++G 
Sbjct: 824 ----IYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGA 872



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 125/285 (43%), Gaps = 16/285 (5%)

Query: 33  TILDILNTKCHTSWQHL-KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T + IL      S   L KQ HA++LK     D  +   L+ C+   +  +      +F+
Sbjct: 594 TFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYG--KCGDMGYCENIFS 651

Query: 92  SVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADK 150
            +  + +   WNS++   + +    + + +   M+    + + FT+ TV  AC+     +
Sbjct: 652 RMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLE 711

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G++VH   V+  L  D+ + S+ + MYA  G ++ A +  +     ++  WN++I GY 
Sbjct: 712 RGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYA 771

Query: 211 KCGDIEGAKELFKSTKDKNT----GSYNAMISGFARFGRFEEARKLFNEMNDKDEIT--- 263
           + G    + +LF   K +       ++  ++S  +  G   E    F+ M++   +    
Sbjct: 772 RHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRM 831

Query: 264 --WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             +S ++D   + G   +  +  N+M    +KP   +   VL AC
Sbjct: 832 EHFSCMVDLLGRVGELNKMEDFLNQM---PVKPNVLIWRTVLGAC 873


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/638 (34%), Positives = 333/638 (52%), Gaps = 86/638 (13%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSG---TLVKCHANSRFSNFELALKVFN 91
           +D +  KC T+  H+KQ  A +L +G F           L  C  +   +    A  +  
Sbjct: 4   MDSIIQKC-TTLSHIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLPYAAHIHR 62

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +  P+   +N++LR       P   ++  S ++  D+    F+     +A +++E    
Sbjct: 63  HIPHPSTNDFNALLRGLARGPHPTHALTFLSTILHPDALTFSFSLIASARALALSETS-- 120

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK 211
             Q+H+H+++ G                                 +D++    LID Y K
Sbjct: 121 --QIHSHLLRRG-------------------------------CHADILLGTTLIDAYAK 147

Query: 212 CGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
           CGD++                                A+++F+E+  +D   W+A+I G 
Sbjct: 148 CGDLD-------------------------------SAQRVFDEIPLRDVAAWNALIAGL 176

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
            +     EAL +FN M+ +  K  +  +   LAAC+ LGAL  G  +H  V++  + ++ 
Sbjct: 177 AQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINV 236

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
            +  A++DMYAKCG  D  ++VF  M   K V TWN MI   AMHG    A+ELF +M +
Sbjct: 237 QVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGK 296

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
            ++  D +T+  VL AC HAG+++ G++    M    G++  V+HYG +VDLLGRAG L 
Sbjct: 297 TQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVG-RGVNRNVKHYGSVVDLLGRAGRLG 355

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------------ 498
           EA  +I+SMP+ P+  +W++LLGAC+ +G VE  E   + L+EM   +            
Sbjct: 356 EAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYA 415

Query: 499 --RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R +DV ++R+ MK R ++  PG S I+V GVIH+F  GD SHP  +EIY  L +I  
Sbjct: 416 ARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRF 475

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
           ++K  GY   +S VL DI EE+KE A  +HSEKLA+AFG I+T  G  IRV KNLR+C D
Sbjct: 476 RIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGD 535

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH   KLISK++ ++IIVRDR R+H F++G CSC D+W
Sbjct: 536 CHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/624 (36%), Positives = 337/624 (54%), Gaps = 77/624 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRA 107
           L Q+ A +LKSG   +  V   L    A++  +  E  +        P + F+ N+++R 
Sbjct: 47  LLQSFAFLLKSGLHSNPLVVTRLFAASASAAPALLEPLVSSLLGPSLPLDAFLVNTLIRT 106

Query: 108 CLEHNEP---WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            +    P    R  + +  M+     PNKFT+P + K+C+                   L
Sbjct: 107 HVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCA------------------AL 148

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
            G   V   G+Q +A           L  G  +D    N LI  Y   G           
Sbjct: 149 PGSPDV---GLQAHAA---------ALKFGFAADHYVSNTLIHMYSCFG----------- 185

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                        +GF       +AR +F  M  +  +TWSA+I GY + G   +A+ +F
Sbjct: 186 -------------AGF-----LGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLF 227

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             MQ   ++P +  +  VLAA A LGAL+   W+   V+R  I     L  AL+D  AKC
Sbjct: 228 RGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKC 287

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D A  VFE M+ + V +W ++I  LAM GR  +A+ +F +M+   + PD + F  VL
Sbjct: 288 GDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVL 347

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           +AC+HAGM+D G      M+  YGI+P++EHYGC+VD+ GRAG + +  E + +MPM+PN
Sbjct: 348 TACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPN 407

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKL 510
             +W  L+ ACR HG +E GE + + LL   P +              +R  + +++R+ 
Sbjct: 408 PIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRRE 467

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M +RGIK  PG S+++++G +HEF  GD SHPQ KEIY M++++  +L+  G+   +S+V
Sbjct: 468 MSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEV 527

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D+DEE+KE A ++HSEKLAIAF  + T PG  +RV+KNLRVC DCH+A K IS+V+ R
Sbjct: 528 LLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNR 587

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           +I+VRDR R+H F++G CSC DFW
Sbjct: 588 EIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/626 (34%), Positives = 339/626 (54%), Gaps = 57/626 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           K  HA I+K G  Q   ++ TLV    KC A S       AL+VF+ +   +   W SVL
Sbjct: 23  KALHAHIVKLGIVQCCPLANTLVNVYGKCGAASH------ALQVFDEMPHRDHIAWASVL 76

Query: 106 RACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            A  + N   + +S++S +      +P+ F +  + KAC+   +   G QVH H + +  
Sbjct: 77  TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 136

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             D  VKSS + MYA  G +N A+ + D     + I W A++ GY K G  E A ELF+ 
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              KN  S+ A+ISGF + G+  EA  +F EM                     +E +++ 
Sbjct: 197 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMR--------------------RERVDIL 236

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           + +          VLS ++ ACA+L A   G  +H  V          +  AL+DMYAKC
Sbjct: 237 DPL----------VLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +  A  +F  M+ ++V +W ++I G+A HG+A+ A+ L+  M    ++P+ +TF  ++
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            AC+H G +++G +    M + YGI P ++HY C++DLLGR+G L EAE +I +MP  P+
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 406

Query: 465 AAVWEALLGACRKHGEVEFGERLGK---------------ILLEMEPQNRRCDDVAKMRK 509
              W ALL AC++ G  + G R+                 +L  +         V++ R+
Sbjct: 407 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARR 466

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSS 568
            + E  ++ +PG S ++V      F  G+ SHP  ++I+ +LKK+ E++++  GY P++S
Sbjct: 467 KLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTS 526

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            +L D+DE+EKE    +HSE+ A+A+G +   PG  IR++KNLRVC DCH   K IS++ 
Sbjct: 527 WILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT 586

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +R+IIVRD  RYHHF+ GKCSCNDFW
Sbjct: 587 EREIIVRDATRYHHFKGGKCSCNDFW 612



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA    L     +H H+ +  I     L   LV++Y KCG    A +VF++M  ++ 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 363 FTWNAMIGGLAMHGRADDAI-ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA-L 420
             W +++  L     +   +           +RPD   F+ ++ ACA+ G ID G Q   
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            ++   Y  D  V+    +VD+  + G L  A+ V  S+ ++ N   W A++    K G 
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKSGR 186

Query: 481 VEFGERLGKIL 491
            E    L +IL
Sbjct: 187 KEEALELFRIL 197


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/497 (40%), Positives = 301/497 (60%), Gaps = 20/497 (4%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS-RFSNFELALKVFNSVHKPNVFVWN 102
           T+  HL QAHA ++ SG     +    L+ C A S   S+   A  +F   H P+ F++N
Sbjct: 22  TATSHLHQAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFLHTHNPSPFMFN 81

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           +++ A    +     ++ Y  M+     P+ FT+P + K+ S +     G Q+HAHVVK 
Sbjct: 82  TIIMAS---SRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKF 138

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDG-SKSDVICWNALIDGYLKCGDIEGAKEL 221
           GL  DV V ++ I +Y+ F  +  AR++ D+  S  DV+ W  LI G+   G I+ A+++
Sbjct: 139 GLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKI 198

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
           F     KNT S+NAMISG+A   R  EARKLF+EM D+D  +WSA++ GY++ G   EAL
Sbjct: 199 FDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEAL 258

Query: 282 EVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           ++F EM   DK+ P +  L   ++ACA L AL++G W+H ++K   + ++  LGT L+DM
Sbjct: 259 DLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDM 318

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y KCG +  A  VF  M  + V +WN+MI GLA++G   +A+ LF+KMQ     P+ ITF
Sbjct: 319 YGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITF 378

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +L+ C+H+G+I  G    + M Q+YGI P+++HYGC+VDLLGRAG + EA + +  MP
Sbjct: 379 IALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMP 438

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAK 506
           M+P++ +W AL+GACR HG+VE GE LGK L+++EP +              +R DDVA 
Sbjct: 439 MKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAM 498

Query: 507 MRKLMKERGIKTNPGSS 523
           +R L K R +  NPG++
Sbjct: 499 VRDLEKGRKVLKNPGNN 515


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/660 (35%), Positives = 341/660 (51%), Gaps = 58/660 (8%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           W+  ++ HA +L+ G  ++  V   L+  +A  +  +   A KVF+S+   +   WN+++
Sbjct: 205 WRMGREVHAHVLRFGFGEEVDVLNALMTMYA--KCGDVMAARKVFDSMTVMDCISWNAMI 262

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               E+ E    + L+  M+  + +PN  T  +V  A  +        ++H   VK G  
Sbjct: 263 AGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFA 322

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
           GDV   +S IQMYA  G + +AR +       D + W A+I GY K G  + A E++   
Sbjct: 323 GDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALM 382

Query: 226 KDKNTG-----------------------------------SY----NAMISGFARFGRF 246
           +  N                                     SY    NA++  +A+  R 
Sbjct: 383 EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRI 442

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           ++A ++F  M++KD ++WS++I G+  +    EAL  F  M  D +KP        LAAC
Sbjct: 443 DKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAAC 501

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           A+ GAL  G  IH HV R  I  +  L  AL+D+Y KCG+   AW  F     K+V +WN
Sbjct: 502 AATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWN 561

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            MI G   HG  D A+  F +M +    PD +TF  +L AC+  GM+  G +    M + 
Sbjct: 562 IMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEK 621

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           Y I P ++HY C+VDLL RAG L EA   I+ MP+ P+AAVW ALL  CR H  VE GE 
Sbjct: 622 YSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGEL 681

Query: 487 LGKILLEMEPQNR------------RC--DDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             K +L +EP +              C  D +A++RK M+E+G+  + G S ++V GV+H
Sbjct: 682 AAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVH 741

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F T D SHPQ++EI  +L+ I E++K  GY+P  S      DE  K+     HSE+LA+
Sbjct: 742 AFLTDDESHPQIREINTVLEGIYERMKASGYAPVESHC--PEDEVLKDDIFCGHSERLAV 799

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AFG INT PG +I V KN   C+ CH   K+IS + +RDIIVRD  + HHF++G CSC D
Sbjct: 800 AFGLINTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 180/361 (49%), Gaps = 40/361 (11%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           RF     A +VF  + + +VF WN ++    +       + LY  M+    +P+ +T+P 
Sbjct: 135 RFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPC 194

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V ++C      + G +VHAHV++ G   +V V ++ + MYA  G V  AR++ D  +  D
Sbjct: 195 VLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMD 254

Query: 199 VICWNALIDGYLKCGDIEGAKELF------------------------------------ 222
            I WNA+I G+ + G+     ELF                                    
Sbjct: 255 CISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHG 314

Query: 223 ---KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
              K     +    N++I  +A  G   +AR +F+ M+ +D +TW+A+I GY K+G+  +
Sbjct: 315 LAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDK 374

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           ALEV+  M+ + + P    ++  LAACA LG+LD G+ +H+  +        V+  A+++
Sbjct: 375 ALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILE 434

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAK  R+D A +VF+ M  K+V +W++MI G   + R  +A+  +F+     ++P+ +T
Sbjct: 435 MYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEAL-YYFRHMLADVKPNSVT 493

Query: 400 F 400
           F
Sbjct: 494 F 494



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 140/277 (50%), Gaps = 17/277 (6%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NAM+S   RFG    A ++F +M ++D  +W+ ++ GY K G   EAL++++ M    ++
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  +   CVL +C  +     G  +H HV R     +  +  AL+ MYAKCG +  A KV
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKV 246

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+ M + +  +WNAMI G   +G  +  +ELF  M  ++++P+ +T   V  A   +G+ 
Sbjct: 247 FDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVA---SGL- 302

Query: 414 DRGLQALTYMQQMYGI------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
              L  +T+ ++M+G+        +V     ++ +    G + +A  V S M    +A  
Sbjct: 303 ---LSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTR-DAMT 358

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
           W A++    K+G   F ++  ++   ME  N   DD+
Sbjct: 359 WTAMISGYEKNG---FPDKALEVYALMEVNNVSPDDI 392



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 183/434 (42%), Gaps = 45/434 (10%)

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           LRA   H +  + + L          P++  Y  +F+ C    A + G++  AH      
Sbjct: 63  LRALCSHGQLAQALWLLESSA---EPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHA 119

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK- 223
              + + ++ + M   FG    A ++     + DV  WN ++ GY K G ++ A +L+  
Sbjct: 120 WFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHR 179

Query: 224 ---------------------STKDKNTGS-----------------YNAMISGFARFGR 245
                                   D   G                   NA+++ +A+ G 
Sbjct: 180 MMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGD 239

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
              ARK+F+ M   D I+W+A+I G+ ++G     LE+F  M  D+++P    ++ V  A
Sbjct: 240 VMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVA 299

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
              L  +     +H    +     D     +L+ MYA  G +  A  VF  M  ++  TW
Sbjct: 300 SGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTW 359

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
            AMI G   +G  D A+E++  M+   + PD IT A  L+ACA  G +D G++ L  + +
Sbjct: 360 TAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAE 418

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL-GACRKHGEVEFG 484
             G    +     I+++  ++  + +A EV   M  E +   W +++ G C  H   E  
Sbjct: 419 SKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCM-HEKDVVSWSSMIAGFCFNHRNFEAL 477

Query: 485 ERLGKILLEMEPQN 498
                +L +++P +
Sbjct: 478 YYFRHMLADVKPNS 491


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/654 (34%), Positives = 340/654 (51%), Gaps = 83/654 (12%)

Query: 19  ISATNIPTSEFSQKT---ILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKC 74
           I+  N P    S+K    I D+L ++  + S    +Q HA I+KSG      V   L+  
Sbjct: 39  ITPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINF 98

Query: 75  HANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF 134
           ++ ++     L+ +VF    + +   W+SV+ +  ++ EP   I  +  M+G +  P+  
Sbjct: 99  YSKTQLP--LLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDH 156

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
            +P+  KAC+I      G  VH  V+K G   DV V SS                     
Sbjct: 157 IFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSS--------------------- 195

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
                     L+D Y KCGDI+                               EAR +F+
Sbjct: 196 ----------LVDMYAKCGDIK-------------------------------EARNVFD 214

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           EM  ++ ++WS +I GYT+ G ++EA+ +F E   + +    F LS V+  C S   L+ 
Sbjct: 215 EMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLEL 274

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH    + S  +   +G++L+ +Y+KCG ++ A++VF+++ +K +  WNAM+   A 
Sbjct: 275 GKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQ 334

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           H    +A +LF KM+   MRP+ ITF CVL AC+HAG+++ G +    M++ Y I+P  +
Sbjct: 335 HAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQ 393

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY  +VDLLGRAG L EA  VI  MP EP  +VW A +  CR HG  +        + E+
Sbjct: 394 HYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFEL 453

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
              +               R +D AK RK++++RG+K   G S I+    +H+F  GD  
Sbjct: 454 GAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRF 513

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           H ++KEIY  L+ + E+++  GY  ++S VL ++  EEK    +YHSE+LAIAFG I+  
Sbjct: 514 HVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIP 573

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            G  IR++KNLRVC DCH+A K ISK+  R IIVRD  R+H F +GKCSC D+W
Sbjct: 574 LGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 314/587 (53%), Gaps = 77/587 (13%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM---VGVDSKPNKFTYPTVFKA 142
           A ++F+ + + + F W++++     H +P   ++LY  M    G D   N+FT  +   A
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            +     + G ++H HVV+ G+                            D +  D + W
Sbjct: 174 AAAARCGRAGRELHCHVVRRGI----------------------------DAAGGDAVLW 205

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
           +AL D Y KCG                               R ++AR++F+ M  +D +
Sbjct: 206 SALADMYAKCG-------------------------------RVDDARRVFDRMPVRDAV 234

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +W+A+++ Y   G   E   +F  M R + ++P +F  + VL ACA       G  +H  
Sbjct: 235 SWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGR 294

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + ++         +AL+ MY+KCG +  A +VFE M   ++ +W A+I G A +G+ ++A
Sbjct: 295 MAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEA 354

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +  F    R  ++PD +TF  VLSACAHAG++D+GL+    +++ Y I+   +HY C++D
Sbjct: 355 LRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVID 414

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC 501
           LL R+G    AE++I +M ++PN  +W +LLG CR H  V    R  + L E+EP+N   
Sbjct: 415 LLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPAT 474

Query: 502 --------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
                         D+V  +R++M+ +GI   P SS I+V   +H F  GD SHP+  EI
Sbjct: 475 YVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEI 534

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y +LKK+  K+  EGY  +   VL D+++E+KE    YHSE+LA+AFG I T  G+ I+V
Sbjct: 535 YALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKV 594

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLR+C DCH+A KLIS++ +RDIIVRD  R+HHF++G CSC D+W
Sbjct: 595 FKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 10/283 (3%)

Query: 218 AKELFKSTKDKNTGSYNAMISGFARFGR-FEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
           A  LF S    +  S+N +IS  +R  R    AR+LF+ M  +D   WSA++ GYT+ G 
Sbjct: 82  ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQ 141

Query: 277 YKEALEVFNEMQRDKIKP---RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV---D 330
            + AL ++  MQ +        +F  S  LAA A+      G  +H HV R  I     D
Sbjct: 142 PEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGD 201

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
           AVL +AL DMYAKCGR+D A +VF+ M +++  +W AM+      GR  +   LF  M R
Sbjct: 202 AVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLR 261

Query: 391 EK-MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
            + +RP+  T+A VL ACA   +   G Q    M +  G          ++ +  + G +
Sbjct: 262 TRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSKCGDM 320

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
             A  V  +M  +P+   W A++    ++G+ E   R   + L
Sbjct: 321 GSAVRVFEAM-AKPDLVSWTAVISGYAQNGQPEEALRYFDMFL 362



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  + KSG     +    L++ +  S+  +   A++VF ++ KP++  W +V+    
Sbjct: 289 RQVHGRMAKSGTGDSCFAESALLRMY--SKCGDMGSAVRVFEAMAKPDLVSWTAVISGYA 346

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ +P   +  +   +    KP+  T+  V  AC+      +G+++  H +K   C + H
Sbjct: 347 QNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIF-HSIKEQYCIE-H 404

Query: 170 VKSSGIQMYACF-------GCVNKARQILDD-GSKSDVICWNALIDG---YLKCGDIEGA 218
                   YAC        G   +A +++ +   K +   W +L+ G   +   G    A
Sbjct: 405 TADH----YACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRA 460

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
            E     + +N  +Y  + + +A  G F+E   +   M  K
Sbjct: 461 AEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESK 501


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/658 (33%), Positives = 332/658 (50%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA +LKSG   +   +  LV     ++    + AL+VF  + + +   WNS+L   +
Sbjct: 286 RELHAALLKSGSEVNIQCNALLV---MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV 342

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      I   SEM+    +P+     ++  A         G +VHA+ +K  L  D  
Sbjct: 343 QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQ 402

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ + MY     +  +  + D     D I W  +I  Y +      A E+F+  + + 
Sbjct: 403 VGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG 462

Query: 230 T-------GSY-------------------------------NAMISGFARFGRFEEARK 251
                   GS                                N +I  +   G    + K
Sbjct: 463 IKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLK 522

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F  +  KD +TW+++I+ Y   G   EAL +F EMQ   ++P    L  +L A   L +
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSS 582

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L +G  +H  + R +  ++  + ++LVDMY+ CG L  A KVF  +K K++  W AMI  
Sbjct: 583 LAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINA 642

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             MHG    AI+LF +M +  + PD ++F  +L AC+H+ +++ G   L  M   Y ++P
Sbjct: 643 TGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEP 702

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             EHY C+VDLLGR+G   EA E I SMP++P + VW +LLGACR H   E        L
Sbjct: 703 WQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRL 762

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           LE+EP N               + ++  ++R  + ERG++ +P  S I++   +H F T 
Sbjct: 763 LELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTR 822

Query: 538 DGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           D SH   + I L L +I E+L+ E GY+ ++  VL D+ EEEK      HSE+LAI+FG 
Sbjct: 823 DNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGL 882

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           INT PG  +R+ KNLRVC DCH  TKL+SK+F RDI+VRD  R+HHF  G CSC DFW
Sbjct: 883 INTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 220/476 (46%), Gaps = 60/476 (12%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWNSVLRACL 109
           + H + +K G  +  +V+  L+  +A       + A++VF  +H   +V  WNS++  CL
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGI--LDSAMRVFELMHDGRDVASWNSMISGCL 242

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+  M       N +T   V + C+       G ++HA ++K+G   +V+
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVN 300

Query: 170 VKSSGIQ-MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELF-- 222
           ++ + +  MY   G V+ A ++  +  + D I WN+++  Y++ G     IE   E+   
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 223 ---------------------------------KSTKDKNTGSYNAMISGFARFGRFEEA 249
                                            K   D +T   N ++  + +    E +
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYS 420

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F+ M  KD I+W+ II  Y +   + EALE+F E Q++ IK    ++  +L AC+ L
Sbjct: 421 AHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
             +     +H +  RN + +D V+   ++D+Y +CG +  + K+FE ++ K++ TW +MI
Sbjct: 481 ETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMI 539

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG- 428
              A  G  ++A+ LF +MQ   ++PD +    +L A         GL +L   ++++G 
Sbjct: 540 NCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIG-------GLSSLAKGKEVHGF 592

Query: 429 -----IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
                   E      +VD+    G L+ A +V +++  + +  +W A++ A   HG
Sbjct: 593 LIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHG 647



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 186/416 (44%), Gaps = 50/416 (12%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
            S+ + C E N    +  L S+  G    P +  Y  V    +  +A  +GVQVHAH V 
Sbjct: 29  TSLKQLCKEGNLRQALRLLTSQTPG--RSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVA 86

Query: 162 NG-LCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
            G L G D  + +  + MY   G V  AR + D  S   V  WNALI  YL  G    A 
Sbjct: 87  TGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEAL 146

Query: 220 ELFKSTK------------------------------------------DKNTGSYNAMI 237
            ++++ +                                          D++T   NA+I
Sbjct: 147 GVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALI 206

Query: 238 SGFARFGRFEEARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           + +A+ G  + A ++F  M+D +D  +W+++I G  ++G + +AL++F  MQR  +    
Sbjct: 207 AMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNS 266

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           +    VL  C  L  L+ G  +H  + ++   V+ +   AL+ MY KCGR+D A +VF +
Sbjct: 267 YTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFRE 325

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           +  K+  +WN+M+     +G   +AIE   +M R   +PD      + SA  H G +  G
Sbjct: 326 IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
            +   Y  +   +D + +    ++D+  +  Y+  +  V   M ++ + + W  ++
Sbjct: 386 KEVHAYAIKQR-LDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHIS-WTTII 439



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSI-CVD 330
           K+G  ++AL +       +  P++     VL   A+  A+ QG+ +H H V   S+   D
Sbjct: 36  KEGNLRQALRLLTSQTPGRSPPQEHY-GWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDD 94

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             L T L+ MY KCGR+  A  +F+ M  + VF+WNA+IG     G A +A+ ++  M+ 
Sbjct: 95  GFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRL 154

Query: 391 EK---MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447
                + PD  T A VL A    G    G + +  +   +G+D        ++ +  + G
Sbjct: 155 SAASGVAPDGCTLASVLKASGVEGDGRCGCE-VHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            L  A  V   M    + A W +++  C ++G
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 316/536 (58%), Gaps = 49/536 (9%)

Query: 35  LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH 94
           L IL   C T+ + L++ HA +LK+G  +       ++   A S   +   A  VF  +H
Sbjct: 27  LSILEKHC-TTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIH 85

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGV 153
            PN+F WN+++R   + + P   ISL+ +M+ V S +P++ TYP+VFKA +       G 
Sbjct: 86  SPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGA 145

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213
           Q+H  V+K GL  D  ++++ I MYA                                CG
Sbjct: 146 QLHGRVIKLGLQFDPFIRNTIIYMYA-------------------------------NCG 174

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
            +    + F    D +  ++N+MI G A+ G  +E+RKLF+EM  ++ ++W+++I GY +
Sbjct: 175 FLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVR 234

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +G  +EAL++F +MQ ++IKP +F +  +L A A LGAL QG WIHD++++N+  ++ ++
Sbjct: 235 NGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIV 294

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
             +++DMY KCG +  A++VFE   +K + +WN MI GLAM+G  ++AI+LF +++   +
Sbjct: 295 TASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNL 354

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           RPD +TF  VL+AC ++G++D+  +  + M + Y I+P ++HY C+VD LGRAG L EAE
Sbjct: 355 RPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAE 414

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC------------ 501
           E+I +MP+ P+A +W +LL ACRKHG VE  +R  K +++++  N  C            
Sbjct: 415 ELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLD-GNDSCGYVLLSNIYAAS 473

Query: 502 ---DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
              ++  + R  MKE+ I+  PG S+I+VNG IHEF  G   HPQ +E+Y +L ++
Sbjct: 474 DQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNEL 529


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 347/659 (52%), Gaps = 91/659 (13%)

Query: 21  ATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSG-----HFQDHYVSGTLVKCH 75
           A N+  ++ S  T++ +LN     S   +  A A +L+         +D+ +  TL+  +
Sbjct: 343 AMNLEGTKPSGVTLVSVLNA---CSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTY 399

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A  R ++   A   F+++  P+V  WN++  A L+H+     + L+  M+    +P+  T
Sbjct: 400 A--RSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVAT 457

Query: 136 YPTVFKACSI---TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           + T   AC+      A   G ++ + + + GL GD  V                      
Sbjct: 458 FITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVA--------------------- 496

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
                     NA ++ Y KCG +  A+                     A F R   AR+ 
Sbjct: 497 ----------NATLNMYAKCGSLADAR---------------------AVFERISPARR- 524

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGA 311
                  D ITW++++  Y   G  KEA E+F  M+ +K +KP K     VL A  S  +
Sbjct: 525 -------DCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTS 577

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE--DMKMKEVFTWNAMI 369
           + QG  IH  V  N    D V+  AL++MYAKCG LD A  +F+      ++V  W ++I
Sbjct: 578 IAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLI 637

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
            G A +G+A+ A++LF+ MQ++ +RP+ +TF   L+AC H G +++G + L+ M   +GI
Sbjct: 638 AGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGI 697

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P  +H+ CIVDLLGR G L EAE+++     + +   W ALL AC+   E+E GER  +
Sbjct: 698 LPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAE 756

Query: 490 ILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            +++++P+                R ++ A +RK M ++GI+ +PG S ++VN  +H F 
Sbjct: 757 RIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFS 816

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFG 595
            GD SHP+ +EIYL L+++   +K  GY  ++  VL D+ +E KE     HSEKLAIAFG
Sbjct: 817 AGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFG 876

Query: 596 FINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            ++T  G+ +RVIKNLRVC DCH+ATKLISKV  RDI++RD  RYHHF +G CSC D+W
Sbjct: 877 LMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 196/457 (42%), Gaps = 65/457 (14%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +V+   +++RA +EH  P + + L+  M   + +PN      +  ACS       G ++H
Sbjct: 108 SVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAAGRRIH 164

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD---GSKSDVICWNALIDGYLKCG 213
           + +       +  + ++ I MY+  G +  A+Q  D     SK DV+ WNA+I  +L+ G
Sbjct: 165 SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 224

Query: 214 DIEGAKELFKSTKDKNTGSYN--------------------------------------- 234
               A +LF+          N                                       
Sbjct: 225 SAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAF 284

Query: 235 ---AMISGFARFGRFEEARKLFNEMNDKDE----ITWSAIIDGYTKDGYYKEALEVFNEM 287
              A++  + + G  ++A ++F    D++     +T SA+I    ++G+ +E+L +F  M
Sbjct: 285 VRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAM 344

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALVDMYAKCGR 346
             +  KP    L  VL AC+ L       ++ +  ++  S   D VLGT L+  YA+   
Sbjct: 345 NLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSND 404

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           L  A   F+ ++  +V +WNAM      H R+ +A+ LF +M  E +RP   TF   L+A
Sbjct: 405 LPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTA 464

Query: 407 CAH-----AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P 460
           CA      A  I + +Q+L    +  G++ +       +++  + G LA+A  V   + P
Sbjct: 465 CAAYPPQTASAIGKRIQSLL---EEAGLEGDTAVANATLNMYAKCGSLADARAVFERISP 521

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
              +   W ++L A   HG    G+   ++   ME +
Sbjct: 522 ARRDCITWNSMLAAYGHHG---LGKEAFELFQAMEAE 555



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           +I   A+ G   EA  L +        T  A+I  + + G   +A+E+F+ M+   ++P 
Sbjct: 86  LIVMHAKCGNLAEAEALADRFASVYSCT--AMIRAWMEHGRPDKAMELFDRME---VRPN 140

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
              L  ++ AC+ LG L  G  IH  +       ++VLG AL+ MY+KCG L  A + F+
Sbjct: 141 CHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFD 200

Query: 356 DM---KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-RPDRITFACVLSACAHAG 411
            +     ++V TWNAMI     +G A +A++LF  M R+    P+ +TF  VL +C  AG
Sbjct: 201 RLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAG 260

Query: 412 MID-RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV-ISSMPMEPNAAV-- 467
           ++    ++A+       GI+ E      +VD  G+ G L +A EV +     EP+ ++  
Sbjct: 261 LLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVT 320

Query: 468 WEALLGACRKHGEVEFGERL 487
             A++ AC ++G  +   RL
Sbjct: 321 CSAMISACWQNGWPQESLRL 340



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 145/343 (42%), Gaps = 82/343 (23%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH----VKSSGIQMYACFGCVNKARQI 190
           TY  + +AC    A K+G ++HAH++   +  D+H    + S  I M+A  G + +A  +
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRI--DLHNHSFLASDLIVMHAKCGNLAEAEAL 102

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------------------------ 226
            D    + V    A+I  +++ G  + A ELF   +                        
Sbjct: 103 AD--RFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVRPNCHALIALVNACSCLGNLAAG 160

Query: 227 ------------DKNTGSYNAMISGFARFGRFEEARKLFNEM---NDKDEITWSAIIDGY 271
                       ++N+   NA+IS +++ G   +A++ F+ +   + +D +TW+A+I  +
Sbjct: 161 RRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAF 220

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFV-LSCVLAAC--ASLGALDQGIWIHDHVKRNSIC 328
            ++G  +EAL++F +M RD   P   V    VL +C  A L +L+    IH  +    I 
Sbjct: 221 LRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE 280

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            +A + TALVD Y K G LD                               DA E+F + 
Sbjct: 281 REAFVRTALVDSYGKLGSLD-------------------------------DAWEVFLRK 309

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             E+     +T + ++SAC   G     L+ L +   + G  P
Sbjct: 310 GDEEPSTSLVTCSAMISACWQNGWPQESLR-LFFAMNLEGTKP 351


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/551 (36%), Positives = 297/551 (53%), Gaps = 50/551 (9%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC- 212
           ++HA V K+ L  D  +    +  Y   G    A ++ DD    D++ WN+LI G+ +C 
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCL 119

Query: 213 -------------------------------GDIEGAKEL----FKSTKDKNTGSYNAMI 237
                                          G ++  K +     K          N++I
Sbjct: 120 HMSLTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
           + + + G    A +LF  + D + ++W++II     +G  +E ++ FN+M+R  I+  + 
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            +  +L AC  LG       IH  +          + TAL+D YAK GRL  ++ VF ++
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
              +   W AM+ G A HG   +AI+LF  M  + + PD +TF  +LSAC+H+G+++ G 
Sbjct: 300 GFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGK 359

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                M ++YGI+P V+HY C+VDLLGR G L +A EVI +MPMEPNA VW ALLGACR 
Sbjct: 360 SYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRV 419

Query: 478 HGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSS 523
           HG +E G+ + + L+ MEP               +R   D AK+R L+KERG+K  PG S
Sbjct: 420 HGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYS 479

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+     H F  GD SHP+ ++IY  L++++ K++  GYS  +  VL D++EE KE   
Sbjct: 480 SIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMI 539

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
             HSEKLAIAFG + +  G  + + KNLR+C DCHS  KLIS + KR II+RD  R+HHF
Sbjct: 540 NKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHF 599

Query: 644 RNGKCSCNDFW 654
            +G CSC D+W
Sbjct: 600 SDGFCSCADYW 610



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 125/550 (22%), Positives = 237/550 (43%), Gaps = 93/550 (16%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  + ++ HA + KS  ++D ++   LV C+  ++    E ALK+F+ +   ++  WNS+
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCY--NKLGYAEDALKLFDDMPHKDLVSWNSL 111

Query: 105 LRA---CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +     CL  +    + + Y+    +  KPN+ T  ++  ACS   A   G  +H   +K
Sbjct: 112 ISGFSRCLHMS----LTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIK 165

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   +V V +S I MY   G +  A ++ +     + + WN++I   +  G      + 
Sbjct: 166 VGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDY 225

Query: 222 FKSTK----DKNTGSY-----------------------------------NAMISGFAR 242
           F   +    +++ G+                                     A++  +A+
Sbjct: 226 FNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAK 285

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            GR   +  +F E+   D + W+A++ GY   G  +EA+++F  M    ++P     + +
Sbjct: 286 LGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHL 345

Query: 303 LAACASLGALDQG---IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           L+AC+  G +++G     +   V      VD    + +VD+  +CG L+ A++V ++M M
Sbjct: 346 LSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY--SCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 360 K-EVFTWNAMIGGLAMHGRADDAIELFFKM-QREKMRP-DRITFACVLSAC--------A 408
           +     W A++G   +HG  +   E+   +   E + P + I  + + SA          
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 409 HAGMIDRGLQALT-YMQQMYG-----------IDPEVEH-YGCIVDLLG---RAGYLAEA 452
            A + +RGL+    Y    YG             PE E  Y  + +LLG   +AGY ++ 
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFG---ERLGKILLEMEPQNRRCDD---VAK 506
           E V+  +  E    V E ++    +   + FG    + G+ L+ +    R C D    AK
Sbjct: 524 EYVLQDVEEE----VKEDMINKHSEKLAIAFGLLVSKEGEALI-ITKNLRICGDCHSTAK 578

Query: 507 MRKLMKERGI 516
           +  L+++R I
Sbjct: 579 LISLIEKRTI 588



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 159/352 (45%), Gaps = 42/352 (11%)

Query: 203 NALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           +AL+     C  I   +E+    FKS   ++    + +++ + + G  E+A KLF++M  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIW 317
           KD ++W+++I G+++      +L  F  M+ +  +KP +  +  +++AC+  GALD G +
Sbjct: 103 KDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKY 158

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH    +    ++  +  +L++MY K G L  A ++FE +      +WN++I     +G 
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAG-----------MIDRGLQA------- 419
           A + I+ F KM+R  +  D  T   +L AC H G           M   G  A       
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATA 278

Query: 420 -------LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA-----EAEEVISSMP---MEPN 464
                  L  +   YG+  EV     +      AGY A     EA ++  SM    +EP+
Sbjct: 279 LLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPD 338

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGI 516
              +  LL AC   G V  G+    ++ E+     R D  + M  L+   G+
Sbjct: 339 HVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGL 390



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 133/302 (44%), Gaps = 15/302 (4%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           ++ TIL ++ + C  +    K  H   +K G   +  V+ +L+  +  S   +   A ++
Sbjct: 138 NEVTILSMI-SACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKS--GDLTSACRL 194

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F ++  PN   WNS++ A + +      I  +++M  +  + ++ T   + +AC      
Sbjct: 195 FEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVG 254

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
           K    +H  +   G    + + ++ +  YA  G ++ +  +  +   +D + W A++ GY
Sbjct: 255 KLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGY 314

Query: 210 LKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-- 263
              G    A +LF+S  +K       ++  ++S  +  G   E +  FN M++   I   
Sbjct: 315 AAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPR 374

Query: 264 ---WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
              +S ++D   + G   +A EV   M    ++P   V   +L AC   G ++ G  + +
Sbjct: 375 VDHYSCMVDLLGRCGLLNDAYEVIQNM---PMEPNAGVWGALLGACRVHGNIELGKEVAE 431

Query: 321 HV 322
           H+
Sbjct: 432 HL 433



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 31/238 (13%)

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           ++S +L A  S  ++     IH  V ++ +  D  +G  LV  Y K G  + A K+F+DM
Sbjct: 41  IVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDM 100

Query: 358 KMKEVFTWNAMIGGLA--MHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMID 414
             K++ +WN++I G +  +H     ++  F+ M+ E  ++P+ +T   ++SAC  +G +D
Sbjct: 101 PHKDLVSWNSLISGFSRCLH----MSLTAFYTMKFEMSVKPNEVTILSMISAC--SGALD 154

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G     +  ++ G   EV+    ++++ G++G L  A  +  ++P +PN   W +++ A
Sbjct: 155 AGKYIHGFGIKVGG-TLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212

Query: 475 CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
              +G    G                 D   KMR+L    GI+ + G+ +  +   +H
Sbjct: 213 QVTNGCAREG----------------IDYFNKMRRL----GIEQDEGTILALLQACLH 250


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 327/585 (55%), Gaps = 58/585 (9%)

Query: 8   TDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV 67
           T L    KP  +S +    S F++K+ + +L  K   S QHLKQ    IL++G  Q    
Sbjct: 13  TSLHFLSKPLHLSTS----SHFTKKSCIFLL--KNCKSMQHLKQIQTQILRTGFHQSGDT 66

Query: 68  SGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127
               + C  +    N   A ++FN +  P +F++N V++A  ++    + + L+ ++   
Sbjct: 67  LNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREE 126

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
              P+ FTYP VFKA       +EG +V+  VVK+GL  D +V +S + MYA  G V   
Sbjct: 127 GLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNL 186

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGA----KELFKSTKDKNTGSYNAMISGFARF 243
           RQ+ ++  + DV+ WN LI GY+KC   E A    +++F     K    + +M+SG+   
Sbjct: 187 RQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNC 246

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+ +EAR+LF     +D + W+A+I+GY +   + +A+ +F EMQ  ++ P +F L  +L
Sbjct: 247 GQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALL 306

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
                                     DAV+GTAL++MYAKCG ++ + ++F  +K K+  
Sbjct: 307 T-------------------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTA 341

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W ++I GLAM+G+   A+ELF +M +  ++PD ITF  VLSAC+H G+++ G +    M
Sbjct: 342 SWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSM 401

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV---WEALLGACRKHGE 480
             +Y I+P++EHYGC++DLLGRAG L EAEE+I   P   N  +   + ALL ACR HG 
Sbjct: 402 TAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGN 461

Query: 481 VEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMID 526
           VE GER+ K L+ +E  +               R +DV K+R+ MK+ G+K  PG S ++
Sbjct: 462 VEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVE 521

Query: 527 VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL------KMEGYSP 565
           VNG++HEF  GD SHP+++EIY ML  I + L      +MEG  P
Sbjct: 522 VNGIVHEFLVGDASHPEMREIYSMLDSIAKPLLGLDENEMEGEIP 566


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/551 (36%), Positives = 297/551 (53%), Gaps = 50/551 (9%)

Query: 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC- 212
           ++HA V K+ L  D  +    +  Y   G    A ++ DD    D++ WN+LI G+ +C 
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCL 119

Query: 213 -------------------------------GDIEGAKEL----FKSTKDKNTGSYNAMI 237
                                          G ++  K +     K          N++I
Sbjct: 120 HMSLTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297
           + + + G    A +LF  + D + ++W++II     +G  +E ++ FN+M+R  I+  + 
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
            +  +L AC  LG       IH  +          + TAL+D YAK GRL  ++ VF ++
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417
              +   W AM+ G A HG   +AI+LF  M  + + PD +TF  +LSAC+H+G+++ G 
Sbjct: 300 GFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGK 359

Query: 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                M ++YGI+P V+HY C+VDLLGR G L +A EVI +MPMEPNA VW ALLGACR 
Sbjct: 360 SYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRV 419

Query: 478 HGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERGIKTNPGSS 523
           HG +E G+ + + L+ MEP               +R   D AK+R L+KERG+K  PG S
Sbjct: 420 HGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYS 479

Query: 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP 583
            I+     H F  GD SHP+ ++IY  L++++ K++  GYS  +  VL D++EE KE   
Sbjct: 480 SIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMI 539

Query: 584 KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF 643
             HSEKLAIAFG + +  G  + + KNLR+C DCHS  KLIS + KR II+RD  R+HHF
Sbjct: 540 NKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHF 599

Query: 644 RNGKCSCNDFW 654
            +G CSC D+W
Sbjct: 600 SDGFCSCADYW 610



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 124/550 (22%), Positives = 237/550 (43%), Gaps = 93/550 (16%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S  + ++ HA + KS  ++D ++   LV C+  ++    E ALK+F+ +   ++  WNS+
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCY--NKLGYAEDALKLFDDMPHKDLVSWNSL 111

Query: 105 LRA---CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +     CL  +    + + Y+    +  KPN+ T  ++  AC+   A   G  +H   +K
Sbjct: 112 ISGFSRCLHMS----LTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIK 165

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   +V V +S I MY   G +  A ++ +     + + WN++I   +  G      + 
Sbjct: 166 VGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDY 225

Query: 222 FKSTK----DKNTGSY-----------------------------------NAMISGFAR 242
           F   +    +++ G+                                     A++  +A+
Sbjct: 226 FNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAK 285

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            GR   +  +F E+   D + W+A++ GY   G  +EA+++F  M    ++P     + +
Sbjct: 286 LGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHL 345

Query: 303 LAACASLGALDQG---IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           L+AC+  G +++G     +   V      VD    + +VD+  +CG L+ A++V ++M M
Sbjct: 346 LSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY--SCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 360 K-EVFTWNAMIGGLAMHGRADDAIELFFKM-QREKMRP-DRITFACVLSAC--------A 408
           +     W A++G   +HG  +   E+   +   E + P + I  + + SA          
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 409 HAGMIDRGLQALT-YMQQMYG-----------IDPEVEH-YGCIVDLLG---RAGYLAEA 452
            A + +RGL+    Y    YG             PE E  Y  + +LLG   +AGY ++ 
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFG---ERLGKILLEMEPQNRRCDD---VAK 506
           E V+  +  E    V E ++    +   + FG    + G+ L+ +    R C D    AK
Sbjct: 524 EYVLQDVEEE----VKEDMINKHSEKLAIAFGLLVSKEGEALI-ITKNLRICGDCHSTAK 578

Query: 507 MRKLMKERGI 516
           +  L+++R I
Sbjct: 579 LISLIEKRTI 588



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 158/352 (44%), Gaps = 42/352 (11%)

Query: 203 NALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
           +AL+     C  I   +E+    FKS   ++    + +++ + + G  E+A KLF++M  
Sbjct: 43  SALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPH 102

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIW 317
           KD ++W+++I G+++      +L  F  M+ +  +KP +  +  +++AC   GALD G +
Sbjct: 103 KDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKY 158

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH    +    ++  +  +L++MY K G L  A ++FE +      +WN++I     +G 
Sbjct: 159 IHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGC 218

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAG-----------MIDRGLQA------- 419
           A + I+ F KM+R  +  D  T   +L AC H G           M   G  A       
Sbjct: 219 AREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATA 278

Query: 420 -------LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA-----EAEEVISSMP---MEPN 464
                  L  +   YG+  EV     +      AGY A     EA ++  SM    +EP+
Sbjct: 279 LLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPD 338

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGI 516
              +  LL AC   G V  G+    ++ E+     R D  + M  L+   G+
Sbjct: 339 HVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGL 390



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 134/302 (44%), Gaps = 15/302 (4%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           ++ TIL ++ + C+ +    K  H   +K G   +  V+ +L+  +  S   +   A ++
Sbjct: 138 NEVTILSMI-SACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKS--GDLTSACRL 194

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
           F ++  PN   WNS++ A + +      I  +++M  +  + ++ T   + +AC      
Sbjct: 195 FEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVG 254

Query: 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY 209
           K    +H  +   G    + + ++ +  YA  G ++ +  +  +   +D + W A++ GY
Sbjct: 255 KLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGY 314

Query: 210 LKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-- 263
              G    A +LF+S  +K       ++  ++S  +  G   E +  FN M++   I   
Sbjct: 315 AAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPR 374

Query: 264 ---WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
              +S ++D   + G   +A EV   M    ++P   V   +L AC   G ++ G  + +
Sbjct: 375 VDHYSCMVDLLGRCGLLNDAYEVIQNM---PMEPNAGVWGALLGACRVHGNIELGKEVAE 431

Query: 321 HV 322
           H+
Sbjct: 432 HL 433



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 114/238 (47%), Gaps = 31/238 (13%)

Query: 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           ++S +L A  S  ++     IH  V ++ +  D  +G  LV  Y K G  + A K+F+DM
Sbjct: 41  IVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDM 100

Query: 358 KMKEVFTWNAMIGGLA--MHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMID 414
             K++ +WN++I G +  +H     ++  F+ M+ E  ++P+ +T   ++SAC   G +D
Sbjct: 101 PHKDLVSWNSLISGFSRCLH----MSLTAFYTMKFEMSVKPNEVTILSMISAC--NGALD 154

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
            G     +  ++ G   EV+    ++++ G++G L  A  +  ++P +PN   W +++ A
Sbjct: 155 AGKYIHGFGIKVGG-TLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212

Query: 475 CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
              +G    G                 D   KMR+L    GI+ + G+ +  +   +H
Sbjct: 213 QVTNGCAREG----------------IDYFNKMRRL----GIEQDEGTILALLQACLH 250


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 318/592 (53%), Gaps = 50/592 (8%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P     ++  + +L + C  +++ L Q  A I+  G   + +V+   +     SRF    
Sbjct: 6   PVQRIVEEKFITLLRS-C-KNYERLHQIQAQIVTHGLEHNDFVAPNFIT--TCSRFKRIH 61

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A K+F+ + +PN   WN++ R  L++      + L+ E+  +   PN FT+P + K+C 
Sbjct: 62  HARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCG 121

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
             E  +EG +VH    K+G   +  V +S I MY+  GCV  A ++  +  + +V+ W A
Sbjct: 122 KLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTA 181

Query: 205 LIDGYLKCGDI-------------------------------EGAKELFKSTKDKNTGSY 233
           +I+GY+ CGD+                                 A+ELF    +++T S+
Sbjct: 182 IINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSW 241

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KI 292
           NAM++G+A  G  E   K+F+EM +++  +W+ +I GY K+G + E LE F  M  +  +
Sbjct: 242 NAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHV 301

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
            P  F L  VL+AC+ LGALD G W+H + +      +  +G  L+DMYAKCG ++ A  
Sbjct: 302 IPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVV 361

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           VF  +  K++ +WN +I GLA+HG A DA+ +F +M+ E   PD +TF  +LSAC H G+
Sbjct: 362 VFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGL 421

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +  G      M   Y I P++EHYGC+VDLLGRAG L +A   I  MP+EP+A +W ALL
Sbjct: 422 VKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALL 481

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
           GACR +  VE  E   + L+E+EP N               R +DVA+++  M++ G + 
Sbjct: 482 GACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRK 541

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
            PG S+I+ N  + EF + D  H + + IY +LK +   L+  GY PN S V
Sbjct: 542 LPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLSDV 593


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 312/569 (54%), Gaps = 53/569 (9%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + K C+  +   +G   HA ++  GL  D+   +  I MY+  G V+ ARQ+ D+     
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 199 VICWNALIDGYLKCGDIEGAKELF------------------------------------ 222
           ++ WN +I    + G+   A +L                                     
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 223 ---KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
              K+  D N     A++  +A+ G  ++A  +F  M D+  +TWS++  GY ++  Y++
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL +F +     +K  +F++S V+ ACA L A+ +G  ++  + ++  C +  + ++L+D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLID 309

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG ++ ++KVF D++ + V  WNAMI GL+ H R+ + + LF KMQ+  + P+ +T
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VLSAC H G++ +G +    M + + + P V HY C+VD L RAG + EA ++IS +
Sbjct: 370 FVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P   +A++W +LL +CR HG +E  E   K L ++EP N               + D+VA
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           KMRKL+KE  +K   G S I++   +H F  G+ +HP++ EIY  L +++++L+  GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +   L  + E  K+   ++HSEKLA   G +   P A IR++KNLR+C DCHS  KL S
Sbjct: 550 ETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLAS 609

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K F RD+IVRD  R+HHF+NG CSC DFW
Sbjct: 610 KFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 159/373 (42%), Gaps = 43/373 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA IL  G   D   S  L+  +  S+  + + A +VF+ +   ++  WN+++ +  
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMY--SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ E    + L  +M    +  ++FT  +V  AC+   A  E   +HA  +K  +  +V 
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ + +YA  G +  A  + +      V+ W+++  GY++    E A  LF       
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           KS    N    +++I  +A+ G  EE+ 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F ++  ++ + W+A+I G ++     E + +F +MQ+  + P       VL+AC  +G
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMG 381

Query: 311 ALDQGIWIHD-HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAM 368
            + +G    D   K + +  +    + +VD  ++ G++  A+ +   +      + W ++
Sbjct: 382 LVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSL 441

Query: 369 IGGLAMHGRADDA 381
           +     HG  + A
Sbjct: 442 LASCRTHGNLELA 454



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P SEF+  ++L     KC  S   L   HA  +K+    + +V+  L+  +A       +
Sbjct: 162 PFSEFTISSVLCACAAKCALSECQL--LHAFAIKAAMDLNVFVATALLDVYAKCGL--MK 217

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A+ VF S+   +V  W+S+    +++    + ++L+ +      K ++F   +V  AC+
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A  EG QV+A + K+G C ++ V SS I MYA  G + ++ ++  D  K +V+ WNA
Sbjct: 278 GLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 205 LIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G  +         LF+  +      N  ++ +++S     G  ++ +K F+ M  + 
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEH 397

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            +      +S ++D  ++ G   EA ++ +++          +   +LA+C + G L+
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL---PFNASASMWGSLLASCRTHGNLE 452


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/625 (33%), Positives = 344/625 (55%), Gaps = 57/625 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACS 144
           A K+F+ + + NV  W++++   L   E   V+ L+  +V +DS  PN++ +  V   C+
Sbjct: 80  ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCA 139

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWN 203
            +   KEG Q H +++K+GL    +VK++ I MY+ CF  V+ A QILD     DV  +N
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFH-VDSAMQILDTVPGDDVFSYN 198

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSY-------------------------- 233
           +++   ++ G    A ++ K   D+    ++ +Y                          
Sbjct: 199 SILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKT 258

Query: 234 ---------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                    + +I  + + G    ARK F+ + D++ + W+A++  Y ++G+++E L +F
Sbjct: 259 GLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLF 318

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +M+ +  +P +F  + +L ACASL AL  G  +H  +  +      ++G AL++MY+K 
Sbjct: 319 TKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKS 378

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G +D ++ VF +M  ++V TWNAMI G + HG    A+ +F  M      P+ +TF  VL
Sbjct: 379 GNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVL 438

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSMPMEP 463
           SAC H  ++  G      + + + ++P +EHY C+V LLGRAG L EAE  + ++  ++ 
Sbjct: 439 SACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKW 498

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRK 509
           +   W  LL AC  H     G+++ + +++M+P +              R+ D V K+RK
Sbjct: 499 DVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRK 558

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LMKER IK  PG+S +D+    H F +   +HP+  +I+  +++++  +K  GY+P+   
Sbjct: 559 LMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGV 618

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           VL D+++E+KE    +HSEKLA+A+G +   P   IR+IKNLR+C+DCH A KLISK   
Sbjct: 619 VLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATN 678

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R IIVRD  R+HHFR G C+CND W
Sbjct: 679 RLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 50/371 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H  +LKSG     YV   L+  H  SR  + + A+++ ++V   +VF +NS+L A +
Sbjct: 148 KQCHGYLLKSGLLLHQYVKNALI--HMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALV 205

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E         +   MV      +  TY +V   C+     + G+Q+HA ++K GL  DV 
Sbjct: 206 ESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVF 265

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+ I  Y   G V  AR+  D     +V+ W A++  YL+ G  E    LF   + ++
Sbjct: 266 VSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELED 325

Query: 230 TG-------------------SY--------------------NAMISGFARFGRFEEAR 250
           T                    +Y                    NA+I+ +++ G  + + 
Sbjct: 326 TRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSY 385

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+ M ++D ITW+A+I GY+  G  K+AL VF +M      P       VL+AC  L 
Sbjct: 386 NVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLA 445

Query: 311 ALDQGIWIHDHVKRNSICVDAVLG----TALVDMYAKCGRLDMAWKVFEDMKMK--EVFT 364
            + +G +  D + +     D   G    T +V +  + G LD A    +       +V  
Sbjct: 446 LVQEGFYYFDQIMKK---FDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVA 502

Query: 365 WNAMIGGLAMH 375
           W  ++    +H
Sbjct: 503 WRTLLNACHIH 513



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 149/282 (52%), Gaps = 6/282 (2%)

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           +++KD +    N++I+ +++ G+ + ARKLF+ M  ++ ++WSA++ GY   G   E L 
Sbjct: 54  QTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLG 113

Query: 283 VF-NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
           +F N +  D   P +++ + VL+ CA  G + +G   H ++ ++ + +   +  AL+ MY
Sbjct: 114 LFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMY 173

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
           ++C  +D A ++ + +   +VF++N+++  L   G   +A ++  +M  E +  D +T+ 
Sbjct: 174 SRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYV 233

Query: 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
            VL  CA    +  GLQ    + +  G+  +V     ++D  G+ G +  A +    +  
Sbjct: 234 SVLGLCAQIRDLQLGLQIHAQLLKT-GLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR- 291

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
           + N   W A+L A  ++G   F E L  +  +ME ++ R ++
Sbjct: 292 DRNVVAWTAVLTAYLQNG--HFEETL-NLFTKMELEDTRPNE 330



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 165/384 (42%), Gaps = 45/384 (11%)

Query: 139 VFKACSITEADKEGVQVHAH-VVKNGLCGDVHVK--SSGIQMYACFGCVNKARQILDDGS 195
           + K  +  ++ + G  +HA  VV+N    D  +   +S I +Y+  G    AR++ D   
Sbjct: 29  LLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRML 88

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKST---------------------------KDK 228
           + +V+ W+AL+ GYL  G++     LF++                            + K
Sbjct: 89  QRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGK 148

Query: 229 NTGSY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
               Y             NA+I  ++R    + A ++ + +   D  ++++I+    + G
Sbjct: 149 QCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESG 208

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
              EA +V   M  + +         VL  CA +  L  G+ IH  + +  +  D  + +
Sbjct: 209 CRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSS 268

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
            L+D Y KCG +  A K F+ ++ + V  W A++     +G  ++ + LF KM+ E  RP
Sbjct: 269 TLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRP 328

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           +  TFA +L+ACA    +  G   L     M G    +     ++++  ++G +  +  V
Sbjct: 329 NEFTFAVLLNACASLVALAYG-DLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNV 387

Query: 456 ISSMPMEPNAAVWEALLGACRKHG 479
            S+M M  +   W A++     HG
Sbjct: 388 FSNM-MNRDVITWNAMICGYSHHG 410


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 319/588 (54%), Gaps = 63/588 (10%)

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
           +S P++ TY  +   C    +  + ++VH H++ NG   D  + +  I MY+  G V+ A
Sbjct: 72  ESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYA 131

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------KSTKDKNTGSY-------- 233
           R++ D   K  +  WNAL       G  E    L+          D+ T +Y        
Sbjct: 132 RKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS 191

Query: 234 ----NAMISG-------------------------FARFGRFEEARKLFNEMNDKDEITW 264
               N ++ G                         +ARFG  + A  +F  M  ++ ++W
Sbjct: 192 ECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSW 251

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           SA+I  Y K+G   EAL  F EM R+     P    +  VL ACASL AL+QG  IH ++
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYI 311

Query: 323 KRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            R  +  D++L   +ALV MY +CG+L++  +VF+ M  ++V +WN++I    +HG    
Sbjct: 312 LRRGL--DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKK 369

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AI++F +M      P  +TF  VL AC+H G+++ G +    M + +GI P++EHY C+V
Sbjct: 370 AIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMV 429

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRA  L EA +++  M  EP   VW +LLG+CR HG VE  ER  + L  +EP+N  
Sbjct: 430 DLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG 489

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                       +  D+V +++KL++ RG++  PG   ++V   ++ F + D  +P +++
Sbjct: 490 NYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQ 549

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I+  L K+ E +K +GY P +  VL++++ EEKE     HSEKLA+AFG INT  G  IR
Sbjct: 550 IHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + KNLR+CEDCH  TK ISK  +++I+VRD  R+H F+NG CSC D+W
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 193/403 (47%), Gaps = 50/403 (12%)

Query: 27  SEFSQKTI-LDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL 85
           S  SQ+T  L IL     +S     + H  IL +G  QD +++  L+  +++    + + 
Sbjct: 73  SSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSD--LGSVDY 130

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A KVF+   K  ++VWN++ RA         V+ LY +M  +  + ++FTY  V KAC  
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190

Query: 146 TEAD----KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           +E       +G ++HAH+ + G    V++ ++ + MYA FGCV+ A  +       +V+ 
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250

Query: 202 WNALIDGYLKCGD----IEGAKELFKSTKDKNTGSY------------------------ 233
           W+A+I  Y K G     +   +E+ + TKD +  S                         
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310

Query: 234 -------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
                        +A+++ + R G+ E  +++F+ M+D+D ++W+++I  Y   GY K+A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVD 339
           +++F EM  +   P       VL AC+  G +++G  + + + R+      +   A +VD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430

Query: 340 MYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGRADDA 381
           +  +  RLD A K+ +DM+ +     W +++G   +HG  + A
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 32/235 (13%)

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
           +I+ + +I    K+G  K+A+ V ++      +  + ++ C    C    +L   + +H 
Sbjct: 46  KISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILC----CGHRSSLSDALRVHR 101

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
           H+  N    D  L T L+ MY+  G +D A KVF+  + + ++ WNA+   L + G  ++
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 381 AIELFFKMQREKMRPDRITFACVLSACA---------------HAGMIDRGLQALTYMQQ 425
            + L++KM R  +  DR T+  VL AC                HA +  RG  +  Y+  
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT 221

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
                        +VD+  R G +  A  V   MP+  N   W A++    K+G+
Sbjct: 222 ------------TLVDMYARFGCVDYASYVFGGMPVR-NVVSWSAMIACYAKNGK 263


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 329/589 (55%), Gaps = 60/589 (10%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC T + HL Q  ++++ SG     +    L++    S   +    L +F+ +  P +F+
Sbjct: 17  KCGT-FDHLNQTTSILITSGLAHHTFFLSDLLR----SATKDLGYTLLLFDRLATPYIFL 71

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+++R+    ++P  V+  YS +      P++ T+P + KA S    ++   Q +AH+V
Sbjct: 72  WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR-NENPFQFYAHIV 130

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K GL  D  V++S +  +A  G V+ +R++  + +K DV+ W ALI+G L+ G    A E
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 221 LFKSTKDKNT---------------------------GSY-------------NAMISGF 240
            F   +                               G Y             +A++  +
Sbjct: 191 CFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMY 250

Query: 241 ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300
           ++ G  ++A K+FNEM  ++ ++W A+I GY +   YKEAL+VF EM  + I+P +  ++
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVT 310

Query: 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK 360
             L ACA LG+LDQG W+H++V R+ + +++ LGTALVDMY+KCG +D A  VFE +  K
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK 370

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +V+ W AMI GLAM G A  ++ LF +M R +++P+ +TF  VLSACAH G++D GL+  
Sbjct: 371 DVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELF 430

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
             M   Y ++P V+HYGC+VDLLGRAG L EA + I SMPMEP   VW AL   C  H  
Sbjct: 431 RLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKA 490

Query: 481 VEFGERLGKILLEMEPQN-----------RRC---DDVAKMRKLMKERGIKTNPGSSMID 526
            E GE +G  L++++P +            RC   +  A +R+LMK +G+  +P  S I+
Sbjct: 491 FELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIE 550

Query: 527 VNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           VNGVIHEF   D SH +   +Y+ML  +  +LK+  Y+ +S+ + F ID
Sbjct: 551 VNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLLTFTID 599


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/554 (36%), Positives = 310/554 (55%), Gaps = 57/554 (10%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI--QMYACFGCVNKAR 188
           P+   Y  + K C+     ++G  VHAH+V +    D H+    I   MYA  GC++ AR
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFL-DNHLVLQNIIVNMYAKCGCLDDAR 143

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------STKDKNTGSY- 233
           ++ D+    D++ W ALI G+ +      A  LF               S+  K +GS  
Sbjct: 144 RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEH 203

Query: 234 ------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                                   +A++  +AR G  + A+  F+ M  K E++W+A+I 
Sbjct: 204 GLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALIS 263

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G+ + G  + AL +  +MQR   +P  F  S V +ACAS+GAL+QG W+H H+ ++ + +
Sbjct: 264 GHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKL 323

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
            A +G  L+DMYAK G +D A +VF+ +   +V +WN M+ G A HG   + ++ F +M 
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQML 383

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           R  + P+ I+F CVL+AC+H+G++D GL     M++ Y ++P+V HY   VDLLGR G L
Sbjct: 384 RIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLL 442

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------- 499
             AE  I  MP+EP AAVW ALLGACR H  +E G    +   E++P +           
Sbjct: 443 DRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIY 502

Query: 500 ----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
               R  DVAK+RK+MKE G+K  P  S +++   +H F   D +HPQ+KEI    ++I 
Sbjct: 503 ASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEIS 562

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            K+K  GY P++S VL  +D++E+E   +YHSEKLA+AF  +NT  G+ IR+ KN+RVC 
Sbjct: 563 GKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCG 622

Query: 616 DCHSATKLISKVFK 629
           DCH+A K +SK+++
Sbjct: 623 DCHAAIKFVSKIYE 636



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 167/363 (46%), Gaps = 41/363 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA ++ S HF D+++    +  +  ++    + A ++F+ +   ++  W +++    ++N
Sbjct: 110 HAHLVDS-HFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNN 168

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
            P   + L+ +M+ +  +PN FT  ++ KA         G Q+HA  +K G    V+V S
Sbjct: 169 RPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGS 228

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN--- 229
           + + MYA  G ++ A+   D       + WNALI G+ + G+ E A  L    + KN   
Sbjct: 229 ALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP 288

Query: 230 -------------------TGSY-----------------NAMISGFARFGRFEEARKLF 253
                               G +                 N ++  +A+ G  ++A+++F
Sbjct: 289 THFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + +   D ++W+ ++ G  + G  KE L+ F +M R  I+P +    CVL AC+  G LD
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGL 372
           +G++  + +K+  +  D       VD+  + G LD A +   +M ++     W A++G  
Sbjct: 409 EGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468

Query: 373 AMH 375
            MH
Sbjct: 469 RMH 471



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALV 338
            L   + +QR  + P   + S +L  C  LG ++QG  +H H V  + +    VL   +V
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           +MYAKCG LD A ++F++M  K++ TW A+I G + + R  DA+ LF +M R  ++P+  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHF 190

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T + +L A      +D G Q   +  + YG    V     +VD+  R G++  A+     
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           MP +   + W AL+    + GE   GE    +L +M+ +N
Sbjct: 250 MPTKSEVS-WNALISGHARKGE---GEHALHLLWKMQRKN 285


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/609 (33%), Positives = 328/609 (53%), Gaps = 59/609 (9%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS-ITEADK-EGVQVHAH 158
           WN++L A      P   + ++  +    ++P+  T+     AC+ + + D  E V+V A 
Sbjct: 80  WNALLAARSRAGSPGAALRVFRALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 159 VVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA 218
               G   DV V S+ + +Y+  G +  A ++ D   + D + W+ ++ G++  G    A
Sbjct: 139 AAGYGR--DVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEA 196

Query: 219 KELFKSTKDKNTGSYNAMISG--------------------------------------- 239
             ++   ++        ++ G                                       
Sbjct: 197 LGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDM 256

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           +A+ G F+ AR++F  M  ++ ++W+A+I G+ ++G+  EAL++F EM    ++P    L
Sbjct: 257 YAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGAL 316

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L ACA +G L  G  IH  + R  +    +LGTA++DMY+KCG L+ A K+F  +  
Sbjct: 317 VSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSS 375

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           +++  WNAMI     HG   DA+ LF ++    ++PD  TFA +LSA +H+G+++ G   
Sbjct: 376 RDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 435

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              M   +GI+P  +H  C+VDLL R+G + EA E+++SM  EP   +W ALL  C  + 
Sbjct: 436 FDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNK 495

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
           ++E GE + K +LE +P++              ++ D V ++RKLMK+ G K  PG S+I
Sbjct: 496 KLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLI 555

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKY 585
           +V+G  H F   D SHPQ +EI  M+ K+  +++  GY P +  V  D+DE+ KE    Y
Sbjct: 556 EVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSY 615

Query: 586 HSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRN 645
           HSE+LAIAFG +NT PG  + +IKNLRVC DCH A K ISK+  R+I+VRD  R+HHF++
Sbjct: 616 HSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKD 675

Query: 646 GKCSCNDFW 654
           G CSC D+W
Sbjct: 676 GACSCGDYW 684



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 171/391 (43%), Gaps = 46/391 (11%)

Query: 24  IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKS---GHFQDHYVSGTLVKCHANSRF 80
           +P+S     T   +  T C      L  A AV +++   G+ +D +V   L+  H  SR 
Sbjct: 103 LPSSARPDSTTFTLALTAC-ARLGDLDAAEAVRVRAFAAGYGRDVFVCSALL--HVYSRC 159

Query: 81  SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
                A++VF+ + + +   W++++   +    P   + +YS M       ++     V 
Sbjct: 160 GAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVI 219

Query: 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI 200
           +AC++T   + G  VH   +++G+  DV + +S + MYA  G  + ARQ+       + +
Sbjct: 220 QACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAV 279

Query: 201 CWNALIDGYLKCGDIEGAKELFK----STKDKNTGSY----------------------- 233
            WNALI G+ + G  + A +LF+    S    ++G+                        
Sbjct: 280 SWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFI 339

Query: 234 -----------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                       A++  +++ G  E ARKLFN+++ +D + W+A+I      G   +AL 
Sbjct: 340 LRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALA 399

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMY 341
           +F E+    IKP     + +L+A +  G +++G  W    +    I         +VD+ 
Sbjct: 400 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLL 459

Query: 342 AKCGRLDMAWKVFEDMKMKEVF-TWNAMIGG 371
           A+ G ++ A ++   M  +     W A++ G
Sbjct: 460 ARSGLVEEANEMLASMHTEPTIPIWVALLSG 490


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/574 (35%), Positives = 313/574 (54%), Gaps = 55/574 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y  +  AC    A ++G +VHAH++K       ++++  +  Y    C+  AR++LD+  
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 196 KSDVICWNALIDGYLKCGDIEGA----KELFKSTKDKNTGSY------------------ 233
           + +V+ W A+I  Y + G    A     E+ +S    N  ++                  
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ 174

Query: 234 -----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                            ++++  +A+ G+ +EAR++F  + ++D ++ +AII GY + G 
Sbjct: 175 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGL 234

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EALE+F+ +  + + P     + +L A + L  LD G   H HV R  +   AVL  +
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRP 395
           L+DMY+KCG L  A ++F++M  +   +WNAM+ G + HG   + +ELF  M+ EK ++P
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 354

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           D +T   VLS C+H  M D GL     M    YG  P  EHYGCIVD+LGRAG + EA E
Sbjct: 355 DAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFE 414

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
            I  MP +P A V  +LLGACR H  V+ GE +G+ L+E+EP+N               R
Sbjct: 415 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DV  +R +M ++ +   PG S I     +H F   D +HP+ +E+   +K+I  K+K 
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY P+ S VL+D+DEE+KE     HSEKLA+ FG I T  G  IRV KNLR+C DCH+ 
Sbjct: 535 AGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNF 594

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            K+ SKVF+R++ +RD+ R+H   +G CSC D+W
Sbjct: 595 AKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 170/375 (45%), Gaps = 49/375 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA ++K+ +    Y+   L+  +   +    E A KV + + + NV  W +++    
Sbjct: 72  QRVHAHMIKTRYLPATYLRTRLLIFYG--KCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       +++++EM+  D KPN+FT+ TV  +C        G Q+H  +VK      + 
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V SS + MYA  G + +AR+I +   + DV+   A+I GY + G  E A E+F     + 
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249

Query: 229 ---NTGSY-----------------------------------NAMISGFARFGRFEEAR 250
              N  +Y                                   N++I  +++ G    AR
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASL 309
           +LF+ M ++  I+W+A++ GY+K G  +E LE+F  M+ +K +KP    L  VL+ C+  
Sbjct: 310 RLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHG 369

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGT----ALVDMYAKCGRLDMAWKVFEDMKMKEVF-T 364
              D G+ I D +           GT     +VDM  + GR+D A++  + M  K     
Sbjct: 370 RMEDTGLNIFDGMVAGEYGTKP--GTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGV 427

Query: 365 WNAMIGGLAMHGRAD 379
             +++G   +H   D
Sbjct: 428 LGSLLGACRVHLSVD 442


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/531 (34%), Positives = 311/531 (58%), Gaps = 17/531 (3%)

Query: 56  ILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115
           ++K+   QD ++    +   A S  S   LA   F +V  PNV V+N+++R C+      
Sbjct: 1   MIKTNTTQDCFLVNQFIS--ACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSE 58

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           + +  Y  M+  +  P  +++ ++ KAC++      G  VH HV K+G    V V+++ I
Sbjct: 59  QALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLI 118

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA 235
           + Y+ FG V  +R++ DD  + DV  W  +I  +++ GD+  A  LF    +KN  ++NA
Sbjct: 119 EFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNA 178

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           MI G+ + G  E A  LFN+M  +D I+W+ +++ Y+++  YKE + +F+++    + P 
Sbjct: 179 MIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPD 238

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +  ++ V++ACA LGAL  G  +H ++      +D  +G++L+DMYAKCG +DMA  VF 
Sbjct: 239 EVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFY 298

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            ++ K +F WN +I GLA HG  ++A+ +F +M+R+++RP+ +TF  +L+AC HAG I+ 
Sbjct: 299 KLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEE 358

Query: 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGAC 475
           G +    M Q Y I P+VEHYGC+VDLL +AG L +A E+I +M +EPN+ +W ALL  C
Sbjct: 359 GRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGC 418

Query: 476 RKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGI-KTNP 520
           + H  +E      + L+ +EP N               R ++VAK+R  MK+ G+ K  P
Sbjct: 419 KLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCP 478

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           GSS +++N  +H F   D  HP   +++L+L ++ ++L++ GY P    +L
Sbjct: 479 GSSWVEINKTVHLFAASDTYHPSYSQLHLLLAELDDQLRLAGYVPELGSIL 529


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 315/585 (53%), Gaps = 73/585 (12%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC--FGCVNKARQILDDGS 195
           ++   CS T+  K   Q+HA +++ GL  D    S  I   A   F  ++ A+Q+ D   
Sbjct: 40  SLIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 196 KSDVICWNALIDGYLKCGD---------------------------IEGAKEL------- 221
             ++  WN LI  Y    +                           I+ A EL       
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 222 ------FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
                  K     +    N++I  +A+ G      ++F     +D ++W+++I  + + G
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGG 216

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             +EALE+F EM+   +KP    +  VL+ACA     + G W+H +++RN I     L  
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSN 276

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI------------GGLAMHGRADDAIE 383
           A++DMY KCG ++ A ++F+ M  K++ +W  M+             GLAMHG   DAI 
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIA 336

Query: 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL 443
           LF KMQ +K++P+ +TF  +L AC+H G+++ G      M+ +YG+ P V+HY C+VD+L
Sbjct: 337 LFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDIL 396

Query: 444 GRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---- 499
           GRAG L EA E+I  MPM P A+VW ALLGAC  H  V   E+    L+E+EP N     
Sbjct: 397 GRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYV 456

Query: 500 ----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYL 549
                     + D V+ +RKLM++ G+K  PG S I+V+G++HEF  GD SHP  K+IY 
Sbjct: 457 LLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYA 516

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEE-KETAPKYHSEKLAIAFGFINTDPGATIRVI 608
            L +I+ +L+  GY PN S +L  ++EE+ KE A   HSEKLAIAFG I+T     IR++
Sbjct: 517 KLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIV 576

Query: 609 KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           KNLRVC DCHS  KL+SK++ R+I++RDRV +     G+ S  DF
Sbjct: 577 KNLRVCGDCHSVAKLVSKLYDREILLRDRV-WIVVDYGRISYEDF 620



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 201/414 (48%), Gaps = 58/414 (14%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P  I+  N     F+    L +++ +C  + Q LKQ HA +L++G F D + +  L+   
Sbjct: 22  PNSITLNN--DRYFANHPTLSLID-QCSETKQ-LKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKF 134
           A S F + + A +VF+ +  PN++ WN+++RA    + P + + ++  M+      P+KF
Sbjct: 78  ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T+P + KA S  E    G   H  V+K  L  DV + +S I  YA  G +    ++  + 
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNX 197

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----------------------- 231
            + DV+ WN++I  +++ G  E A ELF+  + +N                         
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 232 ---SY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
              SY             NAM+  + + G  E+A++LF++M +KD ++W+ ++ GY K G
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 276 YY------------KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
            Y            K+A+ +F++MQ DK+KP     + +L AC+ +G +++G    + ++
Sbjct: 318 EYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 377

Query: 324 RNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMH 375
                +  V   A +VD+  + G L+ A ++ E M M    + W A++G   +H
Sbjct: 378 LVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 431


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/370 (48%), Positives = 249/370 (67%), Gaps = 14/370 (3%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           ++ +L ACAS+ AL+QG  +H  + +    +D  +   LVDMY KCGR++ A +VF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
             +V +WNAMI GLA HG   +A+ LF +M +  ++P++ITF  VLS C+HAG++D G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M + +GI P+ EHY C+VDL GRAG L EA   I+ MP+EPNA+VW +LLGACR H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 479 GEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSM 524
           G +E  ER  + L+E+ P+N               R DD  K+RK+MK+R +K  PG S 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPK 584
           I+V   +H F  GD SHPQ++EIY  L+ +  ++K  GY PN++ VL D++EE+KE    
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 585 YHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644
           +HSEKLAIAFG I+T PG TIRV+KNLRVC DCH+ATK IS++  R+I++RD  R+HHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 645 NGKCSCNDFW 654
           +G+CSC D+W
Sbjct: 361 DGQCSCGDYW 370



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N ++  + + GR E+A+++F+++ + D  +W+A+I G  + G  KEA+ +F +M +  +K
Sbjct: 37  NGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVK 96

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWK 352
           P +     VL+ C+  G +D+G    D + R+  I   A   + +VD++ + G LD A  
Sbjct: 97  PNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALN 156

Query: 353 VFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQRE 391
               M ++     W +++G   +HG    A+ A+E   ++  E
Sbjct: 157 FINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPE 199



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 31/242 (12%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + +AC+   A ++G QVHA ++K G   DV V +  + MY   G +  A+++     + D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 199 VICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
           V  WNA+I G  + G  + A  LF    ++    N  ++  ++SG +  G  +E R  F+
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M     I+     +S ++D + + G   EAL   N+M    ++P   V   +L AC   
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM---PVEPNASVWGSLLGACR-- 178

Query: 310 GALDQGIWIHDHVKRNSICVDAVL-------GT--ALVDMYAKCGRLDMAWKVFEDMKMK 360
                   +H +++     V+ ++       GT   L ++YA  GR D A KV + MK +
Sbjct: 179 --------VHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDR 230

Query: 361 EV 362
            V
Sbjct: 231 SV 232



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA I+K G   D  VS  LV  +   +    E A +VF+ + +P+V  WN+++    
Sbjct: 18  KQVHADIIKIGFELDVSVSNGLVDMYG--KCGRIEDAQEVFSKLLEPDVASWNAMISGLA 75

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDV 168
           +H      + L+ +M+    KPN+ T+  V   CS      EG      + ++ G+    
Sbjct: 76  QHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKA 135

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGAK---ELFKS 224
              S  + ++   GC+++A   ++    + +   W +L+      G+IE A+   E    
Sbjct: 136 EHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIE 195

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
              +N G+Y  + + +A  GR+++A K+   M D+
Sbjct: 196 LTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDR 230


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/643 (34%), Positives = 336/643 (52%), Gaps = 72/643 (11%)

Query: 76  ANSRFSNFELALKVF--NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133
           ++ R+S  +L++  F  N    PN    + +   C + N      +LY  ++  +S P +
Sbjct: 15  SSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQ---ALY--LLSHESNPTQ 69

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
            T   +  + +   +  + + VH  +V  G   D  + +  I M++    V+ AR++ D 
Sbjct: 70  QTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDK 129

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS------TKDKNTGSY-------------- 233
             K  +  WNAL       G      EL+        + D+ T +Y              
Sbjct: 130 TRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSF 189

Query: 234 -----------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
                                    ++  +ARFG    A  +F+EM  K+ ++WSA+I  
Sbjct: 190 LQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIAC 249

Query: 271 YTKDGYYKEALEVFNEMQ---RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           Y K+G   EALE+F EM     D + P    +  VL ACA+  AL+QG  IH ++ R  +
Sbjct: 250 YAKNGKPYEALELFREMMLNTHDSV-PNSVTMVSVLQACAAFAALEQGKLIHAYILRRGL 308

Query: 328 CVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
             D++L   +AL+ MYA+CG+L+    +F+ M  K+V  WN++I    +HG    AI++F
Sbjct: 309 --DSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIF 366

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M      P  I+F  VL AC+H G+++ G +    M + +GI P VEHY C+VDLLGR
Sbjct: 367 EEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGR 426

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN------- 498
           A  L EA ++I  + +EP   VW +LLGACR H  VE  ER  K L ++EP N       
Sbjct: 427 ANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLL 486

Query: 499 -------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                     D+V +++KL+  R ++  PG S I+V   I+ F + D  +PQ ++++ +L
Sbjct: 487 ADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALL 546

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
             +  ++K  GY+P +  VL+D+D+EEKE     HSEKLA+AFG INT  G TIR+ KNL
Sbjct: 547 VNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNL 606

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+CEDCHS TK ISK   R+I+VRD  R+HHF++G CSC D+W
Sbjct: 607 RLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 52/409 (12%)

Query: 31  QKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           Q   L IL+     S       H +++  G  QD +++  L+     S     + A KVF
Sbjct: 70  QTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMF--SELDTVDNARKVF 127

Query: 91  NSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD- 149
           +   K  ++VWN++ RA         V+ LY  M  +    ++FTY  + KAC  +E   
Sbjct: 128 DKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLV 187

Query: 150 ---KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
              ++G ++HAH++++G    VHV ++ + MYA FGCV+ A  + D+    +V+ W+A+I
Sbjct: 188 SFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMI 247

Query: 207 DGYLKCGDIEGAKELFK----STKDKNTGSY----------------------------- 233
             Y K G    A ELF+    +T D    S                              
Sbjct: 248 ACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRG 307

Query: 234 --------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
                   +A+I+ +AR G+ E  + +F+ M+ KD + W+++I  Y   GY ++A+++F 
Sbjct: 308 LDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFE 367

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDAVLGTALVDMYAKC 344
           EM      P       VL AC+  G +++G  + +  VK + I         +VD+  + 
Sbjct: 368 EMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRA 427

Query: 345 GRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGR---ADDAIELFFKMQ 389
            RLD A K+ ED++++     W +++G   +H     A+ A +  FK++
Sbjct: 428 NRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLE 476


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 311/550 (56%), Gaps = 52/550 (9%)

Query: 24  IPT-SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYV-SGTLVKCHANSRFS 81
           +PT   F   + +  L   C T+   L+Q HA I++ G  QDH++ S  L  C++    S
Sbjct: 16  LPTLRSFDTTSSISTLLKACTTT-STLEQVHARIIRKGLHQDHFIISQFLTLCNS---LS 71

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           NF     VFN V  P+  +WN+ ++   E+      +SL+  M   D+ P+KFTYP++ K
Sbjct: 72  NFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIK 131

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY----------------------- 178
           ACS     KEGV  H   V+ G+ GDV V +S I +Y                       
Sbjct: 132 ACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVS 191

Query: 179 --------ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
                   A F  + +AR++ D+  + + + WNA+I GY+KCGD+  A+++F     +N 
Sbjct: 192 WTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNV 251

Query: 231 GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
            S+  MI G+A+ G    AR +F E  ++D + WSA+I GY ++G   EA+++F EM   
Sbjct: 252 VSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSR 311

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVDMYAKCGRLDM 349
            +KP +F++  +++AC+ +G+L+   W+ D+V+++SI V  A +  AL+DM AKCG +D 
Sbjct: 312 NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDR 371

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A K+FE+M  +++ ++ +M+ GL++HG    A+ LF +M  E + PD + F  +L+AC+ 
Sbjct: 372 ATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSR 431

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           AG++D G      M+  Y I P  +HY C+VDLLGRAG L EA E++ SMP+EP+A  W 
Sbjct: 432 AGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWG 491

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERG 515
           ALLGAC+ H ++E GE +   L E+EPQN               +  DV+ +R  M+ERG
Sbjct: 492 ALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERG 551

Query: 516 IKTNPGSSMI 525
           I+  PG S I
Sbjct: 552 IRKIPGCSWI 561


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 346/683 (50%), Gaps = 68/683 (9%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELAL 87
           E +  T   IL    H    H+ + H   L S      ++S  LV  +  S+      A 
Sbjct: 14  ESAVSTHCSILGRTIHA---HIIRTHVTPLPS------FLSNHLVNMY--SKLDLLNSAQ 62

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
            V +  H   V  W S++  C+ +      +  ++ M   + +PN FT+P VFKA +  +
Sbjct: 63  HVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQ 122

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
               G Q+H   +K G+  DV V  S   MY   G    A  + D+  + ++  WNA I 
Sbjct: 123 IPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYIS 182

Query: 208 GYLK--------------------------CGDIEGAKELFKSTKDKNTGSY-------- 233
             ++                          C  +    ++ +    +   ++        
Sbjct: 183 NAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKE 242

Query: 234 -----NAMISGFARFGRFEEARKLFNEM-NDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
                N +I  + + G    A  +FN + N K+ ++W +++    ++   + A  VF + 
Sbjct: 243 DVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQ- 301

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
            R +++P  F++S VL+ACA LG L+ G  +H    +  +  +  +G+ALVDMY KCG +
Sbjct: 302 ARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSI 361

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ--REKMRPDRITFACVLS 405
           + A +VF ++  + + TWNAMIGG A  G  D A+ LF +M      +RP  +T   +LS
Sbjct: 362 ENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILS 421

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
            C+  G ++RG+Q    M+  YGI+P  EH+ C+VDLLGR+G +  A E I +M ++P  
Sbjct: 422 VCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTI 481

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
           +VW ALLGACR HG+ E G+   + L E++  +               R ++   +RK M
Sbjct: 482 SVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEM 541

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K+ GIK N G S I V   IH F+  D SH +  EI  ML K+   +K  GY P+++  L
Sbjct: 542 KDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSL 601

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD+++EEK +   YHSEK+A+AFG I    G  IR+ KNLR+C DCHSA K IS++  R+
Sbjct: 602 FDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGRE 661

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           IIVRD  R+H F++G CSC D+W
Sbjct: 662 IIVRDNHRFHRFKDGCCSCKDYW 684


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 312/569 (54%), Gaps = 53/569 (9%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           + K C+  +   +G   HA ++  GL  D+   +  I MY+  G V+ ARQ+ D+     
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 199 VICWNALIDGYLKCGDIEGAKELF------------------------------------ 222
           ++ WN +I    + G+   A +L                                     
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 223 ---KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
              K+  D N     A++  +A+ G  ++A  +F  M D+  +TWS++  GY ++  Y++
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           AL +F +     +K  +F++S V+ ACA L A+ +G  ++  + ++  C +  + ++L+D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLID 309

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MYAKCG ++ ++KVF D++ + V  WNAMI GL+ H R+ + + LF KMQ+  + P+ +T
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F  VLSAC H G++ +G +    M + + + P V HY C+VD L RAG + EA ++IS +
Sbjct: 370 FVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
           P   +A++W +LL +CR HG +E  E   K L ++EP N               + D+VA
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 506 KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           KMRKL+KE  +K   G S I++   +H F  G+ +HP++ EIY  L +++++L+  GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 566 NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +   L  + E  K+   ++HSEKLA   G +   P A IR++KNLR+C DCHS  KL S
Sbjct: 550 ETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLAS 609

Query: 626 KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           K F RD+IVRD  R+HHF+NG CSC DFW
Sbjct: 610 KFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 158/373 (42%), Gaps = 43/373 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  HA IL  G   D   S  L+  +  S+  + + A +VF+ +   ++  WN+++ +  
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMY--SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++ E    + L  +M    +  ++FT  +V  AC+   A  E   +HA  +K  +  +V 
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ + +YA  G +  A  + +      V+ W+++  GY++    E A  LF       
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           KS    N    +++I  +A+ G  EE+ 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F ++  ++ + W+A+I G ++     E + +F +MQ+  + P       VL+AC  +G
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMG 381

Query: 311 ALDQGIWIHD-HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            + +G    D   K + +  +    + +VD  ++ G++  A+ +   +        W ++
Sbjct: 382 LVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSL 441

Query: 369 IGGLAMHGRADDA 381
           +     HG  + A
Sbjct: 442 LASCRTHGNLELA 454



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 16/298 (5%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P SEF+  ++L     KC  S   L   HA  +K+    + +V+  L+  +A       +
Sbjct: 162 PFSEFTISSVLCACAAKCALSECQL--LHAFAIKAAMDLNVFVATALLDVYAKCGL--MK 217

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            A+ VF S+   +V  W+S+    +++    + ++L+ +      K ++F   +V  AC+
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
              A  EG Q++A + K+G C ++ V SS I MYA  G + ++ ++  D  K +V+ WNA
Sbjct: 278 GLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 205 LIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G  +         LF+  +      N  ++ +++S     G   + +K F+ M  + 
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEH 397

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
            +      +S ++D  ++ G   EA ++ +++          +   +LA+C + G L+
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL---PFNASASMWGSLLASCRTHGNLE 452


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/620 (33%), Positives = 335/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA ++++    D YV+  LV+ +A S    F+ A  VFNS+H  N   W  ++   L
Sbjct: 310 KQLHAQVIRNLPHIDPYVASALVELYAKS--GCFKEAKGVFNSLHDRNNVAWTVLISGFL 367

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + L+++M       ++F   T+   C        G Q+H+      LC    
Sbjct: 368 QYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS------LC---- 417

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           +KS  IQ                      V+  N+LI  Y KC +++ A+ +F+   +K+
Sbjct: 418 LKSGQIQA---------------------VVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 456

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+ +++ G   +AR+ F+ M++K+ ITW+A++  Y + G  ++ L ++  M  
Sbjct: 457 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 516

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           ++ ++P       +   CA LGA   G  I     +  + +D  +  A++ MY+KCGR+ 
Sbjct: 517 EEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 576

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A KVF+ + +K++ +WNAMI G + HG    AIE+F  + +   +PD I++  VLS C+
Sbjct: 577 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 636

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M++ + I P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 637 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 696

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 697 GALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDK 756

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++V+  +H F+  D SHPQV  I   L +++EK+   GY           
Sbjct: 757 GIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT-------- 808

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D    E    +HSEKLA+AFG +       I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 809 DSTRSEI---HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVI 865

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF  G CSC D+W
Sbjct: 866 RDAVRFHHFNGGSCSCGDYW 885



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 197/455 (43%), Gaps = 63/455 (13%)

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSK 130
           V  +  ++      A+++F  +   +V  WN+++    +  +    +  +  M    DS 
Sbjct: 96  VMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSW 155

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN FT     K+C                      G +   S  +Q+ A         Q 
Sbjct: 156 PNAFTLACAMKSC----------------------GALGWHSLALQLLAMV-------QK 186

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            D    S+V    AL+D +++CG ++ A  LF   K+      N+M++G+ +    + A 
Sbjct: 187 FDSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 244

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +LF+ M ++D ++W+ ++   ++ G  +EAL++  +MQ   ++      +  L ACA L 
Sbjct: 245 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 304

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +L  G  +H  V RN   +D  + +ALV++YAK G    A  VF  +  +    W  +I 
Sbjct: 305 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 364

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-----------HAGMIDRG-LQ 418
           G   +G   +++ELF +M+ E M  D+   A ++S C            H+  +  G +Q
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 424

Query: 419 ALTYMQQMYGI------------------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           A+     +  +                  + ++  +  ++    + G +A+A E    M 
Sbjct: 425 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 484

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
            E N   W A+LGA  +HG  E G R+ K++L  E
Sbjct: 485 -EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEE 518



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 37/320 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELF-KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  YL CG +  A+ L        N  ++N M++G+A+ GR  +A +L
Sbjct: 54  GLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVEL 113

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGA 311
           F  M  +D  +W+ ++ GY +   Y  +LE F  M R     P  F L+C + +C +LG 
Sbjct: 114 FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 173

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK------------------- 352
               + +   V++     D+ +  ALVDM+ +CG +D+A +                   
Sbjct: 174 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 233

Query: 353 ------------VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                       +F+ M  ++V +WN M+  L+  GR  +A+++   MQ + +R D  T+
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +V+L  ++G   EA+ V +S+
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSL 351

Query: 460 PMEPNAAVWEALLGACRKHG 479
               N A W  L+    ++G
Sbjct: 352 HDRNNVA-WTVLISGFLQYG 370


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 327/620 (52%), Gaps = 55/620 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q   Q H+ + K+G   D+ + G+L+  +   +  + E AL +FNS  + NV +WN +L 
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYV--KCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + N+  +   L+ +M     +PN+FTYP + + C+ T     G Q+H+  VK G   
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--------------- 211
           D++V    I MY+ +G + KAR++L+   + DV+ W ++I GY++               
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 212 -----------------CGDIEGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFE 247
                            C  I   ++       ++ S    +   +NA+++ +AR GR  
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA   F E+  KDEITW+ ++ G+ + G ++EAL+VF  M +  +K   F     L+A A
Sbjct: 499 EAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L  + QG  IH  V +     +  +G AL+ +Y KCG  + A   F +M  +   +WN 
Sbjct: 559 NLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNT 618

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I   + HGR  +A++LF +M++E ++P+ +TF  VL+AC+H G+++ GL     M   Y
Sbjct: 619 IITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEY 678

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P  +HY C++D+ GRAG L  A++ I  MP+  +A VW  LL AC+ H  +E GE  
Sbjct: 679 GIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFA 738

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K LLE+EP +               +  +  ++RK+M++RG++  PG S I+V  V+H 
Sbjct: 739 AKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHA 798

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HP  ++IY  L  I +++   GY      +  D ++E ++     HSEKLA+ 
Sbjct: 799 FFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVT 858

Query: 594 FGFINTDPGATIRVIKNLRV 613
           FG ++  P   +RVIKNLRV
Sbjct: 859 FGLMSLPPCMPLRVIKNLRV 878



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 190/415 (45%), Gaps = 42/415 (10%)

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV-QVHAHVVKN 162
            L   L H +P +V+SL+++            +    +AC       + V ++HA  V  
Sbjct: 12  TLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTR 71

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA---- 218
           GL     V +  I +Y+  G V  AR++ ++ S  D + W A++ GY + G  E A    
Sbjct: 72  GLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLY 131

Query: 219 ------------------------KELFKSTKDKNTGSY-----------NAMISGFARF 243
                                    ELF   +  +   Y           NA+I+ + R 
Sbjct: 132 RQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRC 191

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F  A ++F +M  +D +T++ +I G+ + G+ + ALE+F EMQ   + P    +S +L
Sbjct: 192 GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           AACASLG L +G  +H ++ +  I  D ++  +L+D+Y KCG ++ A  +F       V 
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVV 311

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN M+           + ELF +MQ   +RP++ T+ C+L  C     ID G Q +  +
Sbjct: 312 LWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSL 370

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               G + ++   G ++D+  + G+L +A  V+  M  E +   W +++    +H
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYVQH 424



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 193/448 (43%), Gaps = 46/448 (10%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           WQ + + HA  +  G  +   V   L+  ++ +       A +VF  +   +   W ++L
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGL--VLPARRVFEELSARDNVSWVAML 115

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               ++      + LY +M      P  +   +V  +C+  E   +G  +HA   K+G C
Sbjct: 116 SGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFC 175

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
            ++ V ++ I +Y   G    A ++  D    D + +N LI G+ +CG  E A E+F+  
Sbjct: 176 SEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM 235

Query: 224 --------------------STKDKNTGS------YNAMISG-----------FARFGRF 246
                               S  D   G+      + A IS            + + G  
Sbjct: 236 QFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +FN  +  + + W+ ++  + +     ++ E+F +MQ   I+P +F   C+L  C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
                +D G  IH    +     D  +   L+DMY+K G L+ A +V E +K K+V +W 
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQ 424
           +MI G   H    DA+  F +MQ+  + PD I  A  +S CA    + +GLQ  A  Y+ 
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
              G   +V  +  +V+L  R G + EA
Sbjct: 476 ---GYSGDVSIWNALVNLYARCGRIREA 500


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 308/526 (58%), Gaps = 45/526 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           H+KQ  + +  SG   D + +G ++   A S   +   A  +F S+ +   F+WN++LRA
Sbjct: 3   HIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRA 62

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  EP  V+SLY  M+     PN +T+  + +AC+       G+ +HA  V+ G    
Sbjct: 63  FTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLG---- 118

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                     +  +  V                  N L+  Y  C  ++ A+ LF  + +
Sbjct: 119 ----------WEAYDFVQ-----------------NGLLHLYASCNCMDSARRLFDGSVN 151

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           ++  ++ A+I+G+A+ G+   AR+LF+EM +K+ ++WSA+I GY + G ++EALE+FN+M
Sbjct: 152 RDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM 211

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q    +P    +   L ACA LGALDQG WIH +V RN + +D +LGTAL+DMYAKCG +
Sbjct: 212 QIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCV 271

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           + A +VF++M  ++VF + ++I GLA HG +  AIE+F +MQ E + P+ +TF C+LSAC
Sbjct: 272 ETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSAC 331

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +  G+++ GL+    M  +YGI+P V+HYGC+VDLLGRAG L +A+ V+  MP+EP++ V
Sbjct: 332 SRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYV 391

Query: 468 WEALLGACRKHGEVEFGERLGKILLE--------------MEPQNRRCDDVAKMRKLMKE 513
             ALL ACR HG+VE G+   + L E              M     + +DVAK+RK M+E
Sbjct: 392 LGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEE 451

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           + +K  PG S+I+V+G + EF  GD SH  + EI L+L  I + LK
Sbjct: 452 KKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHLK 497


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/620 (33%), Positives = 335/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA ++++    D YV+  LV+ +A S    F+ A  VFNS+H  N   W  ++   L
Sbjct: 290 KQLHAQVIRNLPHIDPYVASALVELYAKS--GCFKEAKGVFNSLHDRNNVAWTVLISGFL 347

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++      + L+++M       ++F   T+   C        G Q+H+      LC    
Sbjct: 348 QYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS------LC---- 397

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           +KS  IQ                      V+  N+LI  Y KC +++ A+ +F+   +K+
Sbjct: 398 LKSGQIQA---------------------VVVSNSLISMYAKCDNLQSAEAIFRFMNEKD 436

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+ +++ G   +AR+ F+ M++K+ ITW+A++  Y + G  ++ L ++  M  
Sbjct: 437 IVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLS 496

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
           ++ ++P       +   CA LGA   G  I     +  + +D  +  A++ MY+KCGR+ 
Sbjct: 497 EEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRIL 556

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A KVF+ + +K++ +WNAMI G + HG    AIE+F  + +   +PD I++  VLS C+
Sbjct: 557 EARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS 616

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M++ + I P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 617 HSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVW 676

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 677 GALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDK 736

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++V+  +H F+  D SHPQV  I   L +++EK+   GY           
Sbjct: 737 GIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT-------- 788

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D    E    +HSEKLA+AFG +       I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 789 DSTRSEI---HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVI 845

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF  G CSC D+W
Sbjct: 846 RDAVRFHHFNGGSCSCGDYW 865



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 197/455 (43%), Gaps = 63/455 (13%)

Query: 72  VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSK 130
           V  +  ++      A+++F  +   +V  WN+++    +  +    +  +  M    DS 
Sbjct: 76  VMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSW 135

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN FT     K+C                      G +   S  +Q+ A         Q 
Sbjct: 136 PNAFTLACAMKSC----------------------GALGWHSLALQLLAMV-------QK 166

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEAR 250
            D    S+V    AL+D +++CG ++ A  LF   K+      N+M++G+ +    + A 
Sbjct: 167 FDSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 224

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +LF+ M ++D ++W+ ++   ++ G  +EAL++  +MQ   ++      +  L ACA L 
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
           +L  G  +H  V RN   +D  + +ALV++YAK G    A  VF  +  +    W  +I 
Sbjct: 285 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 344

Query: 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA-----------HAGMIDRG-LQ 418
           G   +G   +++ELF +M+ E M  D+   A ++S C            H+  +  G +Q
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 404

Query: 419 ALTYMQQMYGI------------------DPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           A+     +  +                  + ++  +  ++    + G +A+A E    M 
Sbjct: 405 AVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS 464

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
            E N   W A+LGA  +HG  E G R+ K++L  E
Sbjct: 465 -EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEE 498



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 37/320 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELF-KSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  YL CG +  A+ L        N  ++N M++G+A+ GR  +A +L
Sbjct: 34  GLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVEL 93

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGA 311
           F  M  +D  +W+ ++ GY +   Y  +LE F  M R     P  F L+C + +C +LG 
Sbjct: 94  FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGW 153

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK------------------- 352
               + +   V++     D+ +  ALVDM+ +CG +D+A +                   
Sbjct: 154 HSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 213

Query: 353 ------------VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                       +F+ M  ++V +WN M+  L+  GR  +A+++   MQ + +R D  T+
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +V+L  ++G   EA+ V +S+
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSL 331

Query: 460 PMEPNAAVWEALLGACRKHG 479
               N A W  L+    ++G
Sbjct: 332 HDRNNVA-WTVLISGFLQYG 350


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/699 (30%), Positives = 368/699 (52%), Gaps = 71/699 (10%)

Query: 21  ATNIPTSE---FSQKTILDILNTKCHTSWQHLKQ---AHAVIL-KSGHFQDHYVSGTL-- 71
           A+ +P S+   F    + ++L    ++S+  + +   AH ++  +S   +D Y   +L  
Sbjct: 18  ASLVPKSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLIN 77

Query: 72  --VKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVD 128
             VKC    R      A K+F+ + + NV  W ++++        + V+ L+  M    +
Sbjct: 78  LYVKCRETVR------ARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGE 131

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           S+PN+F    VFK+CS +   +EG Q H   +K GL     V+++ + MY+      +A 
Sbjct: 132 SRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAI 191

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIE----------------------GAKELFKSTK 226
           ++LDD    D+  +++ + GYL+CG  +                       +  LF + +
Sbjct: 192 RVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLR 251

Query: 227 DKNTG----------SYNA-------MISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
           D N             +NA       +I+ + + G+   A+++F++ + ++    + I+D
Sbjct: 252 DLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMD 311

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
            Y +D  ++EAL +F++M   ++ P ++  + +L + A L  L QG  +H  V ++    
Sbjct: 312 AYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRN 371

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
             ++G ALV+MYAK G ++ A K F  M  +++ TWN MI G + HG   +A+E F +M 
Sbjct: 372 HVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMI 431

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
                P+RITF  VL AC+H G +++GL     + + + + P+++HY CIV LL +AG  
Sbjct: 432 FTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMF 491

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP------------- 496
            +AE+ + + P+E +   W  LL AC        G+++ +  +E  P             
Sbjct: 492 KDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIH 551

Query: 497 -QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
            ++R  + VAK+R LM  RG+K  PG S I +    H F   D  HP++  IY  +K+++
Sbjct: 552 AKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVM 611

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            K+K  GYSP+ +    D+DEE++E    YHSEKLA+A+G I T   + + V KN+R+C+
Sbjct: 612 SKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICD 671

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCHSA KLISK+ KR I++RD  R+HHF +G+CSC D+W
Sbjct: 672 DCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/696 (32%), Positives = 365/696 (52%), Gaps = 69/696 (9%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P +  +  ++LD        S + ++  H  I+ +G  ++ +V   LV  +   +  + +
Sbjct: 109 PPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYG--KLGSLD 166

Query: 85  LALKVF--NSVHKPN--VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140
            A +VF   S  +P+  +   ++++ AC ++  P   + L+  M    +KP+  T  +V 
Sbjct: 167 DAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVL 226

Query: 141 KACSITEADKEGVQVHAHVVKN-GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            ACS+         V    ++      D  + ++ +  YA    +++AR   D     DV
Sbjct: 227 NACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDV 286

Query: 200 ICWNALIDGYLKCGDIEGAKELFK------------------------------------ 223
           + WNA+   YL+      A  LF+                                    
Sbjct: 287 VSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRI 346

Query: 224 ------STKDKNTGSYNAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDG 275
                 +  + +T   NA ++ +A+ G   +AR +F  ++   +D ITW++++  Y   G
Sbjct: 347 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHG 406

Query: 276 YYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
             KEA E+F  M+ +K +KP K     VL A  S  ++ QG  IH  V  N    D V+ 
Sbjct: 407 LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ 466

Query: 335 TALVDMYAKCGRLDMAWKVFE--DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
            AL++MYAKCG LD A  +F+      ++V  W +++ G A +G+A+ A++LF+ MQ++ 
Sbjct: 467 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQG 526

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
           +RP+ ITF   L+AC H G +++G + L+ M   +GI P  +H+ CIVDLLGR G L EA
Sbjct: 527 VRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEA 586

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ--------------N 498
           E+++     + +   W ALL AC+   E+E GER  + +++++P+               
Sbjct: 587 EKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAA 645

Query: 499 RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            R ++ A +RK M ++GI+ +PG S ++VN  +H F  GD SHP+ +EIYL L+++   +
Sbjct: 646 GRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSI 705

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
           K  GY  ++  VL D+ +E KE     HSEKLAIAFG ++T  G+ +RVIKNLRVC DCH
Sbjct: 706 KAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCH 765

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +ATKLISKV  RDI++RD  RYHHF +G CSC D+W
Sbjct: 766 TATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 180/427 (42%), Gaps = 62/427 (14%)

Query: 127 VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
           ++ +PN      +  ACS       G ++H+ +       +  + ++ I MY+  G +  
Sbjct: 1   MEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60

Query: 187 ARQILDD---GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN--------- 234
           A+Q  D     SK DV+ WNA+I  +L+ G    A +LF+          N         
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 235 ---------------------------------AMISGFARFGRFEEARKLFNEMNDKDE 261
                                            A++  + + G  ++A ++F   +D++ 
Sbjct: 121 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180

Query: 262 ----ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
               +T SA+I    ++G+ +E+L +F  M  +  KP    L  VL AC+ L       +
Sbjct: 181 STSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAF 240

Query: 318 IHDH-VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           + +  ++  S   D VLGT L+  YA+   L  A   F+ ++  +V +WNAM      H 
Sbjct: 241 VLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHH 300

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAH-----AGMIDRGLQALTYMQQMYGIDP 431
           R  +A+ LF +M  E +RP   TF   L+ACA      A  I + +Q+L    +  G++ 
Sbjct: 301 RPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLL---EEAGLEG 357

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
           +       +++  + G LA+A  V   + P   +   W ++L A   HG    G+   ++
Sbjct: 358 DTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHG---LGKEAFEL 414

Query: 491 LLEMEPQ 497
              ME +
Sbjct: 415 FQAMEAE 421


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/619 (35%), Positives = 331/619 (53%), Gaps = 79/619 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA + + G   +  ++  LV  +  S  ++   A  +F+ + K N+F+WN ++RA  
Sbjct: 78  KQLHARLCQLGIAYNLDLATKLVNFY--SVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYA 135

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      ISLY +M+    KP+ FT P V KACS      EG  +H  V+++G      
Sbjct: 136 WNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGW----- 190

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                                     + DV    AL+D Y KCG +              
Sbjct: 191 --------------------------ERDVFVGAALVDMYAKCGCVV------------- 211

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                             +AR +F+++ D+D + W++++  Y ++G+  E+L +  EM  
Sbjct: 212 ------------------DARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAA 253

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
             ++P +  L  V+++ A +  L  G  IH    R+    +  + TAL+DMYAKCG + +
Sbjct: 254 KGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKV 313

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A  +FE ++ K V +WNA+I G AMHG A +A++LF +M +E  +PD ITF   L+AC+ 
Sbjct: 314 ACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSR 372

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
             ++D G      M +   I+P VEHY C+VDLLG  G L EA ++I  M + P++ VW 
Sbjct: 373 GRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWG 432

Query: 470 ALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLMKERG 515
           ALL +C+ HG VE  E   + L+E+EP              Q+ + + VA++R+LM ++G
Sbjct: 433 ALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKG 492

Query: 516 IKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDID 575
           IK N   S I+V   ++ F +GD SHP    IY  LK++   ++  GY P++  V  D++
Sbjct: 493 IKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVE 552

Query: 576 EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVR 635
           E+EK      HSE+LAIAFG I+T PG  + + KNLR+CEDCH A K ISK+ +R+I VR
Sbjct: 553 EDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVR 612

Query: 636 DRVRYHHFRNGKCSCNDFW 654
           D  RYHHFR+G CSC D+W
Sbjct: 613 DVNRYHHFRHGLCSCGDYW 631



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           +  + +L +C S  AL+ G  +H  + +  I  +  L T LV+ Y+ C  L  A  +F+ 
Sbjct: 59  YYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDK 118

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           +    +F WN +I   A +G  + AI L+ +M    ++PD  T   VL AC+    I  G
Sbjct: 119 IPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG 178

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
            + +       G + +V     +VD+  + G + +A  V   + ++ +A +W ++L A  
Sbjct: 179 -RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKI-VDRDAVLWNSMLAAYA 236

Query: 477 KHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRT 536
           ++G  +  E L  +  EM  +  R  +   +  +     I   P    I   G  H F+ 
Sbjct: 237 QNGHPD--ESL-SLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQY 293

Query: 537 GDGSHPQVKEIY 548
            D     + ++Y
Sbjct: 294 NDKVKTALIDMY 305


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 327/620 (52%), Gaps = 55/620 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q   Q H+ + K+G   D+ + G+L+  +   +  + E AL +FNS  + NV +WN +L 
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYV--KCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A  + N+  +   L+ +M     +PN+FTYP + + C+ T     G Q+H+  VK G   
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--------------- 211
           D++V    I MY+ +G + KAR++L+   + DV+ W ++I GY++               
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 212 -----------------CGDIEGAKE-------LFKSTKDKNTGSYNAMISGFARFGRFE 247
                            C  I   ++       ++ S    +   +NA+++ +AR GR  
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA   F E+  KDEITW+ ++ G+ + G ++EAL+VF  M +  +K   F     L+A A
Sbjct: 499 EAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L  + QG  IH  V +     +  +G AL+ +Y KCG  + A   F +M  +   +WN 
Sbjct: 559 NLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNT 618

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I   + HGR  +A++LF +M++E ++P+ +TF  VL+AC+H G+++ GL     M   Y
Sbjct: 619 IITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEY 678

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           GI P  +HY C++D+ GRAG L  A++ I  MP+  +A VW  LL AC+ H  +E GE  
Sbjct: 679 GIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFA 738

Query: 488 GKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            K LLE+EP +               +  +  ++RK+M++RG++  PG S I+V  V+H 
Sbjct: 739 AKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHA 798

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F  GD  HP  ++IY  L  I +++   GY      +  D ++E ++     HSEKLA+ 
Sbjct: 799 FFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVT 858

Query: 594 FGFINTDPGATIRVIKNLRV 613
           FG ++  P   +RVIKNLRV
Sbjct: 859 FGLMSLPPCMPLRVIKNLRV 878



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 190/415 (45%), Gaps = 42/415 (10%)

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV-QVHAHVVKN 162
            L   L H +P +V+SL+++            +    +AC       + V ++HA  V  
Sbjct: 12  TLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTR 71

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA---- 218
           GL     V +  I +Y+  G V  AR++ ++ S  D + W A++ GY + G  E A    
Sbjct: 72  GLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLY 131

Query: 219 ------------------------KELFKSTKDKNTGSY-----------NAMISGFARF 243
                                    ELF   +  +   Y           NA+I+ + R 
Sbjct: 132 RQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRC 191

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G F  A ++F +M  +D +T++ +I G+ + G+ + ALE+F EMQ   + P    +S +L
Sbjct: 192 GSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLL 251

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           AACASLG L +G  +H ++ +  I  D ++  +L+D+Y KCG ++ A  +F       V 
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVV 311

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            WN M+           + ELF +MQ   +RP++ T+ C+L  C     ID G Q +  +
Sbjct: 312 LWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSL 370

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               G + ++   G ++D+  + G+L +A  V+  M  E +   W +++    +H
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYVQH 424



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 193/448 (43%), Gaps = 46/448 (10%)

Query: 46  WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           WQ + + HA  +  G  +   V   L+  ++ +       A +VF  +   +   W ++L
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGL--VLPARRVFEELSARDNVSWVAML 115

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
               ++      + LY +M      P  +   +V  +C+  E   +G  +HA   K+G C
Sbjct: 116 SGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFC 175

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK-- 223
            ++ V ++ I +Y   G    A ++  D    D + +N LI G+ +CG  E A E+F+  
Sbjct: 176 SEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM 235

Query: 224 --------------------STKDKNTGS------YNAMISG-----------FARFGRF 246
                               S  D   G+      + A IS            + + G  
Sbjct: 236 QFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E A  +FN  +  + + W+ ++  + +     ++ E+F +MQ   I+P +F   C+L  C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
                +D G  IH    +     D  +   L+DMY+K G L+ A +V E +K K+V +W 
Sbjct: 356 TCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ--ALTYMQ 424
           +MI G   H    DA+  F +MQ+  + PD I  A  +S CA    + +GLQ  A  Y+ 
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
              G   +V  +  +V+L  R G + EA
Sbjct: 476 ---GYSGDVSIWNALVNLYARCGRIREA 500


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/610 (34%), Positives = 316/610 (51%), Gaps = 62/610 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANS 78
           ++ T+ P     +   + +L T C T  + L Q  A I+  G   + YV+ + +   A +
Sbjct: 10  VNQTSKPLHRVVEDKFISLLRT-CGTCVR-LHQIQAQIVTHGLEGNDYVTPSFIT--ACA 65

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           R      A +VF+   +PN   WN++ R   + N    V+ L++ M    + PN FT+P 
Sbjct: 66  RLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPM 125

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCV-------------- 184
           V K+C+   A KEG +VH  V K G   +  V  + I MY+  G V              
Sbjct: 126 VVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRD 185

Query: 185 -------------------NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
                                AR++ D   + DV+ WN ++ GY++ GD+  A+ELF   
Sbjct: 186 KNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRM 245

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            D++  S+N ++SG+A  G  E   KLF EM  ++  +W+ +I GY ++G +KEALE F 
Sbjct: 246 PDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFK 305

Query: 286 EM-----------QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
            M               + P  + +  VL AC+ LG L+ G W+H + +      +  +G
Sbjct: 306 RMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVG 365

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            AL+DMYAKCG ++ A  VF+ + +K++ TWN +I GLAMHG   DA+ LF +M+R   R
Sbjct: 366 NALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGER 425

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD +TF  +LSAC H G++  GL     M   Y I P++EHYGC+VDLLGRAG + +A +
Sbjct: 426 PDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVD 485

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           ++  MPMEP+A +W ALLGACR +  VE  E   + L+E+EP N               R
Sbjct: 486 IVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGR 545

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DVA+++  M++ G +  PG S+I  N  + EF + D  HP+   IY  L+ +   L+ 
Sbjct: 546 SQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLRS 605

Query: 561 EGYSPNSSQV 570
            GY PN   V
Sbjct: 606 HGYVPNLVDV 615


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/720 (31%), Positives = 362/720 (50%), Gaps = 110/720 (15%)

Query: 41   KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
            +C TS   L Q HA +  +G  +    S  L++ +A  +   FE + +VF++  KP+ F+
Sbjct: 357  RCATS-TTLTQLHAHLFITGLHRHPPASTKLIESYA--QIGIFESSKRVFDTFPKPDSFM 413

Query: 101  WNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACS--------------- 144
            W  +++  +        +SLY EMV  D ++ + F +P+V KACS               
Sbjct: 414  WGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQAS 473

Query: 145  -----------------------ITEA--------------DKEGVQVHAHVVKNGLCGD 167
                                   +TEA               KEG  VH  V++  +  +
Sbjct: 474  EGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPE 533

Query: 168  VHVKSSGI-QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            +      + ++YA  G +    ++ +   +  ++ WN LI  + + G  E A  LF   +
Sbjct: 534  LDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQ 593

Query: 227  DKN---------------------------------TGSYN-----AMISGFARFGRFEE 248
             +                                  TG++N     A+I  +A+ G    
Sbjct: 594  TQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHS 653

Query: 249  ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            A K+F ++ +K  +TW+++I G++++GY  EA+ +F++M  + +K  K     V+ AC+ 
Sbjct: 654  ANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSH 713

Query: 309  LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
            LG L++G W+H  +    +  D+ L TAL DMY+KCG L MA  VF+ M  + + +W+ M
Sbjct: 714  LGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVM 773

Query: 369  IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
            I G  MHG+ +  I LF +M    ++P+ ITF  +LSAC+HAG ++ G      M + +G
Sbjct: 774  IAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FG 832

Query: 429  IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLG 488
            ++P+ +H+ C+VDLL RAG L  A ++I+S+P   N+++W ALL  CR H  ++  + + 
Sbjct: 833  VEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIE 892

Query: 489  KILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
            K LL+++  +                 D   K+R +MK +G++  PG S I+++  I+ F
Sbjct: 893  KNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRF 952

Query: 535  RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
              GD SH Q K+IY  L+     +  + Y       +    +  KE     HSEKLAIAF
Sbjct: 953  GPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAF 1012

Query: 595  GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            G INT PG T+R+ KNLRVC DCHS  K+ SK+  R+II+RD  R+H FRNG CSCND+W
Sbjct: 1013 GIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 150/356 (42%), Gaps = 69/356 (19%)

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           YACF  +N +R +      S   C  +     L          LF +   ++  +   +I
Sbjct: 340 YACFFTLNSSRSL-----TSHKRCATSTTLTQLHA-------HLFITGLHRHPPASTKLI 387

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRK 296
             +A+ G FE ++++F+     D   W  +I  Y   G+++EA+ +++EM  +D+ +   
Sbjct: 388 ESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISN 447

Query: 297 FVLSCVLAACASLGALDQG--------------IWIHDHVKRNSICVDAV---------- 332
           FV   VL AC+  G L  G                I + V+ +S+ + +V          
Sbjct: 448 FVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSL 507

Query: 333 -----------------------------LGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
                                        LG AL+++YA  G L    KVFE +K K + 
Sbjct: 508 RLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTIL 567

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +WN +I     +G+ ++A+ LF +MQ + + PD  + A  LSAC        G Q   Y+
Sbjct: 568 SWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYI 627

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            +    +  V++   ++D+  + G++  A ++   +  E +   W +++    ++G
Sbjct: 628 IKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNG 680


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/646 (34%), Positives = 342/646 (52%), Gaps = 62/646 (9%)

Query: 67   VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG 126
            VS  LV  +A  +    E A K+F  +   +   WN+++ A  ++      +  YS M  
Sbjct: 417  VSNGLVNMYA--KCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQ 474

Query: 127  VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNK 186
                P+ F   +   +C+  +    G QVH   VK GL  D  V +  ++MY   G ++ 
Sbjct: 475  SCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSD 534

Query: 187  ARQILDDGSKSDVICWNALI-----------------DGYLKCGDI-------------- 215
              ++ +  ++ D + WN ++                 +  ++ G I              
Sbjct: 535  YWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALS 594

Query: 216  -----EGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDK-DEITWS 265
                 E  K++  +       ++    NA+IS +A+ G       LF  M+D+ D I+W+
Sbjct: 595  PLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWN 654

Query: 266  AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            ++I GY  +G  +EA++    M            S +L ACAS+ AL++G+ +H    R+
Sbjct: 655  SMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRS 714

Query: 326  SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
             +  D V+ +ALVDMY+KCGR+D A K+F  M  +  F+WN+MI G A HG    AIE+F
Sbjct: 715  HLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIF 774

Query: 386  FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
             +M R +  PD +TF  VLSAC+HAG+++RGL+    M   +GI P++EHY C++DLLGR
Sbjct: 775  EEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGR 833

Query: 446  AGYLAEAEEVISSMPMEPNAAVWEALLGACRKH---GEVEFGERLGKILLEMEPQNR--- 499
            AG + + +E I  MP+EPNA +W  +L ACR+      ++ G    ++LLE+EPQN    
Sbjct: 834  AGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNY 893

Query: 500  -----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIY 548
                         +D AK R  M++   K   G S + +N  +H F  GD SHP  KEIY
Sbjct: 894  VLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIY 953

Query: 549  LMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVI 608
              L  +I+ ++  GY P +   L+D++EE KE    YHSEKLAIAF    +  G  IR++
Sbjct: 954  EKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSGP-IRIM 1012

Query: 609  KNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KNLRVC DCH A + IS++  R II+RD +R+HHF++GKCSC D+W
Sbjct: 1013 KNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 211/483 (43%), Gaps = 73/483 (15%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++K G   D ++   LV  +A    +    A +VF+ + + N   W  ++   + H 
Sbjct: 84  HVELIKRGLNHDLFLCNHLVNSYAKG--ARLAAASQVFDEMPERNAVSWTCLVSGYVLHG 141

Query: 113 ---EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG--VQVHAHVVKNGLCGD 167
              E +RV       V    +P  FT+ T+ +AC     D+ G  VQVH  V K     +
Sbjct: 142 IAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASN 201

Query: 168 VHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
             V ++ I MY     G    A+++ D     D+I WNAL+  Y K GD+     LFK  
Sbjct: 202 TTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDM 261

Query: 226 KDKNT-----------GSY---------------------------------NAMISGFA 241
           +  ++           GS                                  +A++S FA
Sbjct: 262 QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFA 321

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
           R G  +EA+ +F  +  K+ +T + +I G  +  + +EA+++F    R+ +         
Sbjct: 322 RHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG-TRNTVDVNADTYVV 380

Query: 302 VLAACASLGALDQGIWI----HDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFED 356
           +L+A A     ++G+ I    H H+ R  +  +   +   LV+MYAKCG ++ A K+F+ 
Sbjct: 381 LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQL 440

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           M+  +  +WN +I  L  +G  ++A+  +  M++  + P        LS+CA       G
Sbjct: 441 MEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCA-------G 493

Query: 417 LQALTYMQQM------YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           L+ LT  QQ+      +G+D +      +V + G  G +++  +V +SM  E +   W  
Sbjct: 494 LKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNT 552

Query: 471 LLG 473
           ++G
Sbjct: 553 MMG 555



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/514 (21%), Positives = 226/514 (43%), Gaps = 51/514 (9%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+ A   PTS F+  T+L               Q H ++ K+ +  +  V   L+  + +
Sbjct: 156 EVQAGCRPTS-FTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGS 214

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK----PNK 133
                  LA +VF+     ++  WN+++    +  +     +L+ +M   DS+    P +
Sbjct: 215 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTE 274

Query: 134 FTYPTVFKACSITEADKEGV-QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
            T+ ++  A S++      + QV   V+K+G   D++V S+ +  +A  G  ++A+ I  
Sbjct: 275 HTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFL 334

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELF---KSTKDKNTGSY---------------- 233
              + + +  N LI G ++    E A ++F   ++T D N  +Y                
Sbjct: 335 SLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEG 394

Query: 234 ------------------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                                   N +++ +A+ G  E A K+F  M   D I+W+ II 
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
              ++G  +EA+  ++ M++  I P  F L   L++CA L  L  G  +H    +  + +
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDL 514

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA-MHGRADDAIELFFKM 388
           D  +   LV MY +CG +   WKVF  M   +  +WN M+G +A       + +++F  M
Sbjct: 515 DTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNM 574

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
            R  + P+++TF  +L+A +   +++ G Q    + + +G+  +      ++    ++G 
Sbjct: 575 MRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMK-HGVMEDNVVDNALISCYAKSGD 633

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +   E + ++M    +A  W +++     +G ++
Sbjct: 634 MGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 222/524 (42%), Gaps = 65/524 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L Q    +LKSG   D YV   LV   A  R    + A  +F S+ + N    N ++   
Sbjct: 294 LDQVLVWVLKSGCSSDLYVGSALVSAFA--RHGLTDEAKDIFLSLKQKNAVTLNGLIVGL 351

Query: 109 LEHNEPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQ----VHAHVVKN 162
           +  +     + ++   VG  +    N  TY  +  A +     +EG++    VH H+++ 
Sbjct: 352 VRQDFSEEAVKIF---VGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRT 408

Query: 163 GLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE----- 216
           GL    + V +  + MYA  G +  A +I      +D I WN +I    + G+ E     
Sbjct: 409 GLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMH 468

Query: 217 ------------------------GAKELFKSTK----------DKNTGSYNAMISGFAR 242
                                   G K L    +          D +T   N ++  +  
Sbjct: 469 YSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGE 528

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGY-TKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            G   +  K+FN M + DE++W+ ++    +      E ++VFN M R  + P K     
Sbjct: 529 CGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFIN 588

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MK 360
           +LAA + L  L+ G  +H  V ++ +  D V+  AL+  YAK G +     +F +M   +
Sbjct: 589 LLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRR 648

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +  +WN+MI G   +G   +A++  + M       D  TF+ +L+ACA    ++RG++  
Sbjct: 649 DAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELH 708

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
            +  + + ++ +V     +VD+  + G +  A ++ +SM  + N   W +++    +HG 
Sbjct: 709 AFGIRSH-LESDVVVESALVDMYSKCGRVDYASKLFNSMT-QRNEFSWNSMISGYARHG- 765

Query: 481 VEFGERLGKILLEMEPQNRRCDDVAKMRKL-------MKERGIK 517
              G +  +I  EM       D V  +  L       + ERG++
Sbjct: 766 --LGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLE 807



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 15/284 (5%)

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           EL K   + +    N +++ +A+  R   A ++F+EM +++ ++W+ ++ GY   G  +E
Sbjct: 86  ELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEE 145

Query: 280 ALEVFNEMQRD---KIKPRKFVLSCVLAACASLGA--LDQGIWIHDHVKRNSICVDAVLG 334
           A  VF  M R+     +P  F    +L AC   G   L   + +H  V +     +  + 
Sbjct: 146 AFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVC 205

Query: 335 TALVDMYAKC--GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE- 391
            AL+ MY  C  G   +A +VF+   ++++ TWNA++   A  G       LF  MQR  
Sbjct: 206 NALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGD 265

Query: 392 ---KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              ++RP   TF  +++A + +      L  +       G   ++     +V    R G 
Sbjct: 266 SRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGL 325

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492
             EA+++  S+  +    +   ++G  R+    +F E   KI +
Sbjct: 326 TDEAKDIFLSLKQKNAVTLNGLIVGLVRQ----DFSEEAVKIFV 365



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 125/266 (46%), Gaps = 14/266 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF-NSVHKPNVFVWNSVLRAC 108
           KQ HA ++K G  +D+ V   L+ C+A S   +      +F N   + +   WNS++   
Sbjct: 603 KQVHAAVMKHGVMEDNVVDNALISCYAKS--GDMGSCEHLFTNMSDRRDAISWNSMISGY 660

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           + +      +     M+      +  T+  +  AC+   A + G+++HA  +++ L  DV
Sbjct: 661 IYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDV 720

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----DIEGAKELFKS 224
            V+S+ + MY+  G V+ A ++ +  ++ +   WN++I GY + G     IE  +E+ +S
Sbjct: 721 VVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRS 780

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT----WSAIIDGYTKDGYYKEA 280
            +  +  ++ +++S  +  G  E   + F  M D   +     +S +ID   + G   + 
Sbjct: 781 RESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKI 840

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAAC 306
            E    +QR  I+P   +   VL AC
Sbjct: 841 KEY---IQRMPIEPNALIWRTVLVAC 863



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 17/175 (9%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  + +  +  D  L   LV+ YAK  RL  A +VF++M  +   +W  ++ G  +HG 
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 378 ADDAIELFFKMQREKM---RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           A++A  +F  M RE     RP   TF  +L AC      D G   L +  Q++G+  + E
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQ-----DGGPDRLGFAVQVHGLVSKTE 197

Query: 435 HYG------CIVDLLGR--AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +         ++ + G    G    A+ V    P+  +   W AL+    K G+V
Sbjct: 198 YASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIR-DLITWNALMSVYAKKGDV 251


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/602 (33%), Positives = 323/602 (53%), Gaps = 63/602 (10%)

Query: 116 RVISLYSEMVGVDSKPNKFT----------YPTVFKACSITEADKEGVQVHAHVVKNGLC 165
           R IS+++     +  P +++          +  + + C+   A  E    H   ++  L 
Sbjct: 36  RNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQ 95

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-------------- 211
           GDV + +  I  Y+  G V  ARQ+ D   +  ++ WN +I  Y +              
Sbjct: 96  GDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEM 155

Query: 212 ------------------CG---DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRF 246
                             CG   D    K+L     K++ D N     A++  +A+ G  
Sbjct: 156 RNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMI 215

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +A ++F  M DK  +TWS+++ GY +   Y+EAL ++   QR  ++  +F LS V+ AC
Sbjct: 216 NDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICAC 275

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           ++L AL +G  +H  ++++    +  + ++ VDMYAKCG L  ++ +F +++ K +  WN
Sbjct: 276 SNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWN 335

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
            +I G A H R  + + LF KMQ++ M P+ +TF+ +LS C H G+++ G +    M+  
Sbjct: 336 TIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTT 395

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           YG+ P V HY C+VD+LGRAG L+EA E+I S+P EP A++W +LL +CR    +E  E 
Sbjct: 396 YGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEV 455

Query: 487 LGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
             K L E+EP+              N++ +++AK RKL+++  +K   G S ID+   +H
Sbjct: 456 AAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVH 515

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            FR G+ SHP+++EI  ML  ++ +L+  GY P+    L D++  +KE     HSEKLA+
Sbjct: 516 IFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLAL 575

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
            FG +    G+T+R++KNLR+C DCH   K  S   +R IIVRD  R+HHF +G CSC +
Sbjct: 576 VFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGE 635

Query: 653 FW 654
           FW
Sbjct: 636 FW 637



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 163/363 (44%), Gaps = 43/363 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H   ++     D  +S  L+  ++   F   ELA +VF+ + + ++  WN+++    
Sbjct: 83  KACHGKTMRMELQGDVTLSNVLINAYSKCGF--VELARQVFDGMLERSLVSWNTMIGLYT 140

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +      + ++ EM     K ++FT  +V  AC       E  ++H   +K  L  +++
Sbjct: 141 RNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLY 200

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK--- 226
           V ++ + +YA  G +N A Q+ +       + W++++ GY++  + E A  L++  +   
Sbjct: 201 VGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMS 260

Query: 227 -DKNTGSYNAMI---------------------SGF--------------ARFGRFEEAR 250
            ++N  + +++I                     SGF              A+ G   E+ 
Sbjct: 261 LEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESY 320

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
            +F+E+ +K+   W+ II G+ K    KE + +F +MQ+D + P +   S +L+ C   G
Sbjct: 321 IIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTG 380

Query: 311 ALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAM 368
            +++G      ++    +  + V  + +VD+  + G L  A+++ + +  +   + W ++
Sbjct: 381 LVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSL 440

Query: 369 IGG 371
           +  
Sbjct: 441 LAS 443



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 16/289 (5%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           SEF+  ++L      C       K+ H + +K+    + YV   L+  +A     N   A
Sbjct: 163 SEFTISSVLSACGANCDA--LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIND--A 218

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
           ++VF S+   +   W+S++   ++       + LY     +  + N+FT  +V  ACS  
Sbjct: 219 VQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNL 278

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
            A  EG Q+HA + K+G   +V V SS + MYA  G + ++  I  +  + ++  WN +I
Sbjct: 279 AALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTII 338

Query: 207 DGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMN----- 257
            G+ K    +    LF+  +      N  ++++++S     G  EE R+ F  M      
Sbjct: 339 SGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGL 398

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             + + +S ++D   + G   EA E+   +     +P   +   +LA+C
Sbjct: 399 SPNVVHYSCMVDILGRAGLLSEAYELIKSI---PFEPTASIWGSLLASC 444


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/593 (36%), Positives = 334/593 (56%), Gaps = 52/593 (8%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           ++  + E A + F+ + + +V  WN++L    ++     V+ L+ EMV    +P++ T+ 
Sbjct: 205 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWV 264

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           TV  ACS +  D          +   L   +H K   IQ+  CF                
Sbjct: 265 TVISACS-SRGDP--------CLAASLVRTLHQKQ--IQL-NCF---------------- 296

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKD-KNTGSYNAMISGFARFGRFEEARKLFNEM 256
                 AL+D Y KCG I  A+ +F      +N+ ++NAMIS + R G  + AR+LFN M
Sbjct: 297 ---VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQG 315
             ++ +TW+++I GY ++G    A+E+F EM    K+ P +  +  V++AC  LGAL+ G
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
            W+   +  N I +      A++ MY++CG ++ A +VF++M  ++V ++N +I G A H
Sbjct: 414 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 473

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G   +AI L   M+   + PDR+TF  VL+AC+HAG+++ G +    ++     DP ++H
Sbjct: 474 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDH 528

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
           Y C+VDLLGR G L +A+  +  MPMEP+A V+ +LL A R H +VE GE     L E+E
Sbjct: 529 YACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELE 588

Query: 496 PQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           P N               R  DV ++R+ MK+ G+K   G S ++  G +H+F   D SH
Sbjct: 589 PDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 648

Query: 542 PQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDP 601
            +  +IY +L ++ +K++  GY  + S VL D++EEEKE     HSEKLAI +  + ++ 
Sbjct: 649 ERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEA 708

Query: 602 GATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           GA IRV+KNLRVC DCH+A K+ISK+  R IIVRD  R+H F +G CSC D+W
Sbjct: 709 GAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 236/474 (49%), Gaps = 51/474 (10%)

Query: 45  SWQHLKQAHA-VILKSGHFQDHYVSGTLVKC---HANSRFSNFELALKVFNSVHKPNVFV 100
           ++ HL+Q HA +I  S H  +++V+  +  C    A   +++      +FNS   PNVFV
Sbjct: 13  NFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHL-----LFNSTLNPNVFV 67

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           + S+LR      +  +V+ ++  M G   +P+ F YP + K+     A   G+  HAHV+
Sbjct: 68  FTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKS-----AGNGGIGFHAHVL 122

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDD--GSKSDVICWNALIDGYLKCGDIEGA 218
           K G   D  V+++ I MYA  G +  AR++ D+    +  V  WNA++ GY K      A
Sbjct: 123 KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
           + LF    ++N  ++ AM++G+A+    E AR+ F+ M ++  ++W+A++ GY ++G  +
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
           E L +F+EM    I+P +     V++AC+S G       +   + +  I ++  + TAL+
Sbjct: 243 EVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALL 302

Query: 339 DMYAKC--------------------------------GRLDMAWKVFEDMKMKEVFTWN 366
           DMYAKC                                G LD A ++F  M  + V TWN
Sbjct: 303 DMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWN 362

Query: 367 AMIGGLAMHGRADDAIELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           +MI G A +G++  AIELF +M   +K+ PD +T   V+SAC H G ++ G   + ++ +
Sbjct: 363 SMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 422

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              I   +  +  ++ +  R G + +A+ V   M    +   +  L+     HG
Sbjct: 423 NQ-IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHG 474



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 151/345 (43%), Gaps = 40/345 (11%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS-KPNKF 134
           A +R  N + A ++FN++   NV  WNS++    ++ +    I L+ EM+      P++ 
Sbjct: 336 AYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 395

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           T  +V  AC    A + G  V   + +N +   +   ++ I MY+  G +  A+++  + 
Sbjct: 396 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEAR 250
           +  DV+ +N LI G+   G    A  L  + K    + +  ++  +++  +  G  EE R
Sbjct: 456 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 515

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           K+F  + D     ++ ++D   + G  ++A      M+R  ++P   V   +L A     
Sbjct: 516 KVFESIKDPAIDHYACMVDLLGRVGELEDAKRT---MERMPMEPHAGVYGSLLNASR--- 569

Query: 311 ALDQGIWIHDHVKRNSICVDAVLG---------TALVDMYAKCGRLDMAWKVFEDMK--- 358
                  IH  V+   +  + +             L ++YA  GR     ++ E MK   
Sbjct: 570 -------IHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGG 622

Query: 359 MKEVFTWNAMIGGLAMHG---------RADDAIELFFKMQREKMR 394
           +K+   W+ +  G  +H          R+DD  +L  ++ R+KMR
Sbjct: 623 VKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIEL-RKKMR 666



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 39/289 (13%)

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LFN   + +   +++++  Y+    + + + +F  MQ   ++P  FV   ++ +     A
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKS-----A 110

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK--MKEVFTWNAMI 369
            + GI  H HV +     DA +  A++DMYA+ G +  A KVF+++    ++V  WNAM+
Sbjct: 111 GNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            G         A  LF  M      P+R  IT+  +++  A        ++ L   ++ +
Sbjct: 171 SGYWKWESEGQAQWLFDVM------PERNVITWTAMVTGYAK-------VKDLEAARRYF 217

Query: 428 GIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVE 482
              PE  V  +  ++    + G   E   +   M    +EP+   W  ++ AC   G+  
Sbjct: 218 DCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPC 277

Query: 483 FGERLGKILLEMEPQ------------NRRCDDVAKMRKLMKERGIKTN 519
               L + L + + Q              +C  +   R++  E G   N
Sbjct: 278 LAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRN 326


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/664 (32%), Positives = 332/664 (50%), Gaps = 88/664 (13%)

Query: 79  RFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV-DSKPNKFTYP 137
           R   F  A  VF+        VW   +  C         +  ++EM+   ++ PN F   
Sbjct: 57  RRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLA 116

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR--------- 188
            V + C+     + G +VH  +++NG+  DV + ++ + MYA  G   +AR         
Sbjct: 117 AVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAER 176

Query: 189 ----------------------QILDDGSKSDVICWNALIDGYLKCGDIEGA----KELF 222
                                 Q+ D+    D   WN +I G ++ G    A    + + 
Sbjct: 177 DAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMA 236

Query: 223 KSTKDKNTGSYN-----------------------------------AMISGFARFGRFE 247
           ++    N  +Y+                                   +++  + + G  E
Sbjct: 237 QAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLE 296

Query: 248 EARKLFNE---MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
            A  +F+    +       WS ++ GY ++G  +EAL++F  M R+ +   +F L+ V A
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAA 356

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
           ACA++G ++QG  +H  V++    +DA L +A+VDMYAKCG L+ A  +F+    K +  
Sbjct: 357 ACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424
           W +M+   A HG+   AIELF +M  EKM P+ IT   VLSAC+H G++  G      MQ
Sbjct: 417 WTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQ 476

Query: 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484
           + YGI P +EHY CIVDL GR+G L +A+  I    +   A VW+ LL ACR H   E+ 
Sbjct: 477 EEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYA 536

Query: 485 ERLGKILLEME--------------PQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           +   + L+++E                N +  D  ++R  M+ER ++  PG S I +   
Sbjct: 537 KLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNT 596

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           +H F  GD SHPQ  EIY  L+K++E+LK  GY+  +  V+ D+++E++ETA K+HSEKL
Sbjct: 597 VHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKL 656

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIAFG I+T  G  +R+ KNLRVCEDCH A K IS    R+I+VRD  R+HHF++  CSC
Sbjct: 657 AIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSC 716

Query: 651 NDFW 654
            DFW
Sbjct: 717 EDFW 720



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 8/198 (4%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFV 298
           + R  RF +AR +F+E   +    W+  I G  + G Y + +  F EM  + +  P  FV
Sbjct: 55  WVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFV 114

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
           L+ V+  CA +G ++ G  +H  + RN + +D VL  A++DMYAKCG+ + A +VF  M 
Sbjct: 115 LAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMA 174

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            ++  +WN  IG     G    +++LF     E    D  ++  ++S    +G       
Sbjct: 175 ERDAVSWNIAIGACIQSGDILGSMQLF----DESPLRDTTSWNTIISGLMRSG---HAAD 227

Query: 419 ALTYMQQMYGIDPEVEHY 436
           AL+++++M        HY
Sbjct: 228 ALSHLRRMAQAGVVFNHY 245


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 319/585 (54%), Gaps = 25/585 (4%)

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           +P +  WN+VL  C  H      +++   M+     P+  T  ++ K+ + + +   G +
Sbjct: 282 EPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTE 341

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH   +++GL  D +  ++ + MYA  G ++ A+++ D     ++  WN+L+ G+   G 
Sbjct: 342 VHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGH 401

Query: 215 IEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSA 266
            + A EL ++ K    D N  ++N +I+G+A  G   +A  L  ++       + ++W++
Sbjct: 402 FDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTS 461

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I G    G Y+++   F+EMQ+D I+P    +  +L ACA L  L +G  +H    R +
Sbjct: 462 LISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRA 521

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              + V+ TAL+DMYAK G L  A +VF  ++ K +   NAM+ GLA+HG+A +A  LF 
Sbjct: 522 YDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFH 581

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M R  ++PD ITF  +L+AC   G++    + L  M+  YG+ P  EH+ C+VDLL R 
Sbjct: 582 DMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARR 641

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------- 498
           GYL EA   I   P EP A+ W ALL  C  HG ++  E   + L ++EP N        
Sbjct: 642 GYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMM 701

Query: 499 ------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS--HPQVKEIYLM 550
                 +  D+   ++  MK RG+   PG S       IH F    GS  HP+  EIY  
Sbjct: 702 SLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDE 761

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG-ATIRVIK 609
           + +++ +++M GY P++  + +D+ EEEKE     H+EKLA+ +G I +D   A +RV+K
Sbjct: 762 MSRLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSRAPVRVVK 821

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           N R+C DCH   K +S +  R II+RD  R+HHF +GKCSC+D+W
Sbjct: 822 NTRMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 866



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 175/386 (45%), Gaps = 33/386 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +  +WN  +    E  +    I+ + EM       + +       AC       EG  VH
Sbjct: 142 DAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVH 201

Query: 157 AHVVKNGLCGDVHVKSSGI--QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           AH ++ GL  D H    G    MYA    V  A  +L   + + V+ WNA+I   ++ G 
Sbjct: 202 AHALRVGLV-DAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGL 260

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           ++ A EL +                  R  R  E     +E  +    TW+ ++ G  + 
Sbjct: 261 VDDALELAE------------------RMARDAET----SEAAEPTLATWNTVLSGCARH 298

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G  +EAL V   M    I P    +S +L + A+ G+L  G  +H    R+ +  DA  G
Sbjct: 299 GRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTG 358

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TALVDMYAKCGRLD+A +VF+ ++ + + TWN+++ G A  G  D A+EL   M+R ++ 
Sbjct: 359 TALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRID 418

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIVDLLGRAGYLAEA 452
           P+  T+  +++  A  G+     QA+  ++Q+   G+ P V  +  ++      G   ++
Sbjct: 419 PNVTTWNGLITGYAMNGLSS---QAMLLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDS 475

Query: 453 EEVISSMP---MEPNAAVWEALLGAC 475
               S M    ++P+      LL AC
Sbjct: 476 FTFFSEMQQDGIQPSLVTMLVLLRAC 501



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 169/413 (40%), Gaps = 23/413 (5%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T+  +L +  ++ S  H  + H   L+ G   D Y    LV  +A  +    ++A +VF+
Sbjct: 322 TVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYA--KCGRLDIAQRVFD 379

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +   N+  WNS++          R + L   M      PN  T+  +    ++     +
Sbjct: 380 GLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQ 439

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFG-----CVNKARQILDDGSKSDVICWNALI 206
            + +   +   G+  +V V  + +   +C G           ++  DG +  ++    L+
Sbjct: 440 AMLLLRQIKSAGVAPNV-VSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 498

Query: 207 DGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                   +   KEL     +   D       A+I  +A+ G    A+++F  +  K+ +
Sbjct: 499 RACAGLALLTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLV 558

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDH 321
             +A++ G    G   EA  +F++M R  +KP     + +L AC S+G + +   ++ D 
Sbjct: 559 CCNAMLTGLAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDM 618

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGR--- 377
             +  +   A     +VD+ A+ G LD A    E    +    +W A++ G A+HG    
Sbjct: 619 EAKYGVAPTAEHHACMVDLLARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDL 678

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           A+ A    FK++      +   +  ++S      M D   ++L Y  +  G+D
Sbjct: 679 AESAARHLFKLEPH----NSANYLAMMSLYEQHQMFDEA-ESLKYAMKARGVD 726



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 19/261 (7%)

Query: 242 RFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           R GR    R+L  E +    KD + W+  +    + G +  A+  F EM+   +    + 
Sbjct: 121 RLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYA 180

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDA--VLGTALVDMYAKCGRLDMAWKVFED 356
            +  L AC   G   +G  +H H  R  + VDA  ++   L  MYA+   +  A  V   
Sbjct: 181 CARALHACGRAGRRLEGRAVHAHALRVGL-VDAHPLVPGFLAGMYAEGADVAAATTVLLR 239

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-----EKMRPDRITFACVLSACAHAG 411
                V  WNA+I      G  DDA+EL  +M R     E   P   T+  VLS CA  G
Sbjct: 240 TAGAGVVAWNAVIACCVRLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHG 299

Query: 412 MIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAA 466
              R  +AL  +++M   GI P+      ++  +  +G L    EV        + P+A 
Sbjct: 300 ---RDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAY 356

Query: 467 VWEALLGACRKHGEVEFGERL 487
              AL+    K G ++  +R+
Sbjct: 357 TGTALVDMYAKCGRLDIAQRV 377


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 343/656 (52%), Gaps = 57/656 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LKS HF D YV+  L+  +A  +    E A +VF S+   +   WN++L   L  N
Sbjct: 271 HGAALKSNHFADVYVANALIAMYA--KCGRMEDAERVFASMLCRDYVSWNTLLSG-LVQN 327

Query: 113 EPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVK 171
           E +R  ++ + +M     KP++ +   +  A   +     G +VHA+ ++NGL  ++ + 
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIG 387

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-- 229
           ++ I MYA   CV       +   + D+I W  +I GY +      A  LF+  + K   
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447

Query: 230 -----TGSY-------------------------------NAMISGFARFGRFEEARKLF 253
                 GS                                NA+++ +   G  + AR+ F
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAF 507

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             +  KD ++W+++I     +G   EALE+F  +++  I+P    +   L+A A+L +L 
Sbjct: 508 ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLK 567

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +G  IH  + R    ++  + ++LVDMYA CG ++ + K+F  +K +++  W +MI    
Sbjct: 568 KGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANG 627

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHG  ++AI LF KM  E + PD ITF  +L AC+H+G++  G +    M+  Y ++P  
Sbjct: 628 MHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWP 687

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C+VDLL R+  L EA + + SMP++P++ VW ALLGAC  H   E GE   K LL+
Sbjct: 688 EHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQ 747

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
            + +N               R +DV ++R  MK  G+K NPG S I+V+  IH F   D 
Sbjct: 748 SDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDK 807

Query: 540 SHPQVKEIYLMLKKIIEKL-KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN 598
           SHPQ  +IYL L +  + L K  GY   +  V  ++ EEEK      HSE+LA+ +G + 
Sbjct: 808 SHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLV 867

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T  G +IR+ KNLR+C+DCH+  K+ S+V +R ++VRD  R+HHF  G CSC DFW
Sbjct: 868 TPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 219/477 (45%), Gaps = 60/477 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA +LKS H      +  L   H   +  + + A+KVF+ + +  +F WN+++ A +
Sbjct: 66  QQLHARLLKS-HLSAFLATKLL---HMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFV 121

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    I LY EM  +    +  T+P+V KAC      + G ++H   VK G    V 
Sbjct: 122 SSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVF 181

Query: 170 VKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           V ++ I MY   G +  AR +L DG    K D + WN++I  ++  G    A  LF+  +
Sbjct: 182 VCNALIAMYGKCGDLGGAR-VLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQ 240

Query: 227 D----KNTGSY-----------------------------------NAMISGFARFGRFE 247
           +     NT ++                                   NA+I+ +A+ GR E
Sbjct: 241 EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRME 300

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           +A ++F  M  +D ++W+ ++ G  ++  Y++AL  F +MQ    KP +  +  ++AA  
Sbjct: 301 DAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASG 360

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
             G L  G  +H +  RN +  +  +G  L+DMYAKC  +      FE M  K++ +W  
Sbjct: 361 RSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTT 420

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           +I G A +    +AI LF K+Q + M  D +    VL AC+       GL++  ++++++
Sbjct: 421 IIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREIH 473

Query: 428 GID-----PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           G        ++     IV++ G  G+   A     S+    +   W +++  C  +G
Sbjct: 474 GYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIR-SKDIVSWTSMITCCVHNG 529



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/470 (22%), Positives = 209/470 (44%), Gaps = 46/470 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV--HKPNVFVWNSVLRAC 108
           + H V +K G  +  +V   L+  +   +  +   A  +F+ +   K +   WNS++ A 
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMYG--KCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +   +    +SL+  M  V    N +T+    +        K G+ +H   +K+    DV
Sbjct: 224 VTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADV 283

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL------------------ 210
           +V ++ I MYA  G +  A ++       D + WN L+ G +                  
Sbjct: 284 YVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNS 343

Query: 211 -----------------KCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
                            + G++   KE+     ++  D N    N +I  +A+    +  
Sbjct: 344 AQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHM 403

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
              F  M++KD I+W+ II GY ++  + EA+ +F ++Q   +     ++  VL AC+ L
Sbjct: 404 GYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGL 463

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            + +    IH +V +  +  D +L  A+V++Y + G  D A + FE ++ K++ +W +MI
Sbjct: 464 KSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMI 522

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                +G   +A+ELF+ +++  ++PD I     LSA A+   + +G +   ++ +  G 
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GF 581

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
             E      +VD+    G +  + ++  S+  + +  +W +++ A   HG
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHG 630


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 319/585 (54%), Gaps = 25/585 (4%)

Query: 95  KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQ 154
           +P +  WN+VL  C  H      +++   M+     P+  T  ++ K+ + + +   G +
Sbjct: 283 EPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTE 342

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VH   +++GL  D +  ++ + MYA  G ++ A+++ D     ++  WN+L+ G+   G 
Sbjct: 343 VHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGH 402

Query: 215 IEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSA 266
            + A EL ++ K    D N  ++N +I+G+A  G   +A  L  ++       + ++W++
Sbjct: 403 FDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTS 462

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I G    G Y+++   F+EMQ+D I+P    +  +L ACA L  L +G  +H    R +
Sbjct: 463 LISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRA 522

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
              + V+ TAL+DMYAK G L  A +VF  ++ K +   NAM+ GLA+HG+A +A  LF 
Sbjct: 523 YDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFH 582

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            M R  ++PD ITF  +L+AC   G++    + L  M+  YG+ P  EH+ C+VDLL R 
Sbjct: 583 DMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARR 642

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------- 498
           GYL EA   I   P EP A+ W ALL  C  HG ++  E   + L ++EP N        
Sbjct: 643 GYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMM 702

Query: 499 ------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS--HPQVKEIYLM 550
                 +  D+   ++  MK RG+   PG S       IH F    GS  HP+  EIY  
Sbjct: 703 SLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDE 762

Query: 551 LKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG-ATIRVIK 609
           + +++ +++M GY P++  + +D+ EEEKE     H+EKLA+ +G I +D   A +RV+K
Sbjct: 763 MSRLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSRAPVRVVK 822

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           N R+C DCH   K +S +  R II+RD  R+HHF +GKCSC+D+W
Sbjct: 823 NTRMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 867



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 175/386 (45%), Gaps = 33/386 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           +  +WN  +    E  +    I+ + EM       + +       AC       EG  VH
Sbjct: 143 DAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVH 202

Query: 157 AHVVKNGLCGDVHVKSSGI--QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           AH ++ GL  D H    G    MYA    V  A  +L   + + V+ WNA+I   ++ G 
Sbjct: 203 AHALRVGLV-DAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGL 261

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           ++ A EL +                  R  R  E     +E  +    TW+ ++ G  + 
Sbjct: 262 VDDALELAE------------------RMARDAET----SEAAEPTLATWNTVLSGCARH 299

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G  +EAL V   M    I P    +S +L + A+ G+L  G  +H    R+ +  DA  G
Sbjct: 300 GRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTG 359

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TALVDMYAKCGRLD+A +VF+ ++ + + TWN+++ G A  G  D A+EL   M+R ++ 
Sbjct: 360 TALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRID 419

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQM--YGIDPEVEHYGCIVDLLGRAGYLAEA 452
           P+  T+  +++  A  G+     QA+  ++Q+   G+ P V  +  ++      G   ++
Sbjct: 420 PNVTTWNGLITGYAMNGLSS---QAMLLLRQIKSAGVAPNVVSWTSLISGSCNGGDYQDS 476

Query: 453 EEVISSMP---MEPNAAVWEALLGAC 475
               S M    ++P+      LL AC
Sbjct: 477 FTFFSEMQQDGIQPSLVTMLVLLRAC 502



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 169/413 (40%), Gaps = 23/413 (5%)

Query: 33  TILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN 91
           T+  +L +  ++ S  H  + H   L+ G   D Y    LV  +A  +    ++A +VF+
Sbjct: 323 TVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYA--KCGRLDIAQRVFD 380

Query: 92  SVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151
            +   N+  WNS++          R + L   M      PN  T+  +    ++     +
Sbjct: 381 GLEHRNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQ 440

Query: 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFG-----CVNKARQILDDGSKSDVICWNALI 206
            + +   +   G+  +V V  + +   +C G           ++  DG +  ++    L+
Sbjct: 441 AMLLLRQIKSAGVAPNV-VSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLL 499

Query: 207 DGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEI 262
                   +   KEL     +   D       A+I  +A+ G    A+++F  +  K+ +
Sbjct: 500 RACAGLALLTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLV 559

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDH 321
             +A++ G    G   EA  +F++M R  +KP     + +L AC S+G + +   ++ D 
Sbjct: 560 CCNAMLTGLAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDM 619

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAMHGR--- 377
             +  +   A     +VD+ A+ G LD A    E    +    +W A++ G A+HG    
Sbjct: 620 EAKYGVAPTAEHHACMVDLLARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDL 679

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID 430
           A+ A    FK++      +   +  ++S      M D   ++L Y  +  G+D
Sbjct: 680 AESAARHLFKLEPH----NSANYLAMMSLYEQHQMFDEA-ESLKYAMKARGVD 727



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 19/261 (7%)

Query: 242 RFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           R GR    R+L  E +    KD + W+  +    + G +  A+  F EM+   +    + 
Sbjct: 122 RLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYA 181

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDA--VLGTALVDMYAKCGRLDMAWKVFED 356
            +  L AC   G   +G  +H H  R  + VDA  ++   L  MYA+   +  A  V   
Sbjct: 182 CARALHACGRAGRRLEGRAVHAHALRVGL-VDAHPLVPGFLAGMYAEGADVAAATTVLLR 240

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-----EKMRPDRITFACVLSACAHAG 411
                V  WNA+I      G  DDA+EL  +M R     E   P   T+  VLS CA  G
Sbjct: 241 TAGAGVVAWNAVIACCVRLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHG 300

Query: 412 MIDRGLQALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAA 466
              R  +AL  +++M   GI P+      ++  +  +G L    EV        + P+A 
Sbjct: 301 ---RDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAY 357

Query: 467 VWEALLGACRKHGEVEFGERL 487
              AL+    K G ++  +R+
Sbjct: 358 TGTALVDMYAKCGRLDIAQRV 378


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/500 (39%), Positives = 291/500 (58%), Gaps = 24/500 (4%)

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----S 232
           MY    C+  ++ I D+    +++ WN+LI GY   G  + AK L    K++       +
Sbjct: 1   MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60

Query: 233 YNAMISGFARFGRFEEARKLFNEMN----DKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +N++++G++  G  +EA  L +++       + ++W+A+I G +++G Y E++E F +MQ
Sbjct: 61  WNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQ 120

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + IKP    +S +L  C  L  L +G  IH    R S   D  + TAL+D Y+K G L+
Sbjct: 121 EEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLE 180

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A KVF   + K + +WN MI G A++G   + I L   MQR  + PD ITF  +LS C 
Sbjct: 181 SAHKVFWSAE-KTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCK 239

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           ++G+++ G +    M   YGI P +EHY C+ DLLGRAGYL EA + I +MP++P+A+VW
Sbjct: 240 NSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVW 299

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
            A+LG+CR HG +EF E   K L ++EP N               R +DV +++ LM  R
Sbjct: 300 GAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYAMSNRWEDVDRIKDLMDTR 359

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK     S I ++  +H F  G   H    EIY  L +++ +LK  GY P+ + V  +I
Sbjct: 360 GIKPRQVWSWIQIDQRVHLFSAGGIPHQDEGEIYYELYQLVSELKKFGYLPDVNCVYQNI 419

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           DEEEK      H+EKLAI +G I T   A IRVIKN R+C DCH+A KLIS V  R+I +
Sbjct: 420 DEEEKVKMLLSHTEKLAITYGLIKTS-SAPIRVIKNTRICSDCHTAAKLISLVRSREIFL 478

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF+ GKCSCND+W
Sbjct: 479 RDGVRFHHFKAGKCSCNDYW 498



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 53/325 (16%)

Query: 82  NFELALKVFNSVH----KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           +F+ A ++ N +     KP++  WNS++            ++L  ++      PN  ++ 
Sbjct: 38  HFDHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWT 97

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI----LDD 193
            +   CS      E ++    + + G+  +    SS ++       + K ++I    +  
Sbjct: 98  ALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRK 157

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
               D+    ALID Y K GD+E A ++F S  +K   S+N MI GFA  G   E   L 
Sbjct: 158 SFIEDLYVATALIDTYSKSGDLESAHKVFWSA-EKTLASWNCMIMGFAINGCGREVIALL 216

Query: 254 NEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACAS 308
           + M       D IT++A++ G    G  +E  + F+ M  D  IKP     SC       
Sbjct: 217 DGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSC------- 269

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
                                       + D+  + G LD AW   + M +K +   W A
Sbjct: 270 ----------------------------MADLLGRAGYLDEAWDFIQTMPIKPDASVWGA 301

Query: 368 MIGGLAMHGR---ADDAIELFFKMQ 389
           M+G   +HG    A+ A +  FK++
Sbjct: 302 MLGSCRIHGNIEFAEIAAKELFKLE 326


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/623 (33%), Positives = 333/623 (53%), Gaps = 60/623 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A+   + + +P+  ++++++ ACL H    R + L  + V   +K + F    V     I
Sbjct: 51  AVDYLHRIPQPSPRLYSTLIAACLRH----RKLEL-GKRVHAHTKASNFIPGIVISNRLI 105

Query: 146 TEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
               K G  V A ++ + +   D+   ++ I  YA  G + +AR++ D+    D   WNA
Sbjct: 106 HMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNA 165

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYN------------------------------ 234
           +I GY+  G    A +LF+  ++  + + N                              
Sbjct: 166 VISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRS 225

Query: 235 ----------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                     A++  + + G   EAR +F++M DKD ++W+ +I    +DG  KE   +F
Sbjct: 226 GLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLF 285

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            ++    ++P ++  + VL ACA L A   G  +H ++ R      +   +ALV +Y+KC
Sbjct: 286 RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKC 345

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G  + A +VF  M   ++ +W ++I G A +G+ D A++ F  + R   +PD ITF  VL
Sbjct: 346 GNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVL 405

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC HAG++D GL+    +++ +G+    +HY C++DLL R+G   EAE +I +MPM+P+
Sbjct: 406 SACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPD 465

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDVAKMRKL 510
             +W +LLG CR HG +E  ER  K L E+EP+N                  +  K+R  
Sbjct: 466 KFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRND 525

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M  RGI   PG S I++   +H F  GD SHP++ +I+  L ++ +K+K EGY  +++ V
Sbjct: 526 MDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFV 585

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
           L D++EE+KE    YHSEKLA+AFG I+T PG  I+V KNLR C DCH+A K ISK+ +R
Sbjct: 586 LHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQR 645

Query: 631 DIIVRDRVRYHHFRNGKCSCNDF 653
            IIVRD  R+H F +G CSC D+
Sbjct: 646 KIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 178/388 (45%), Gaps = 51/388 (13%)

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
           T++  +AN      E A K+F+ +   + F WN+V+   +        + L+  M   +S
Sbjct: 134 TMISGYAN--VGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENES 191

Query: 130 KP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
              N FT  +   A +   + + G ++H +++++GL  D  V ++ + +Y   G +N+AR
Sbjct: 192 SNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEAR 251

Query: 189 QILDDGSKSDVICWNALI-----DG---------------------YLKCGDIEGAKELF 222
            I D  +  D++ W  +I     DG                     Y   G +    +L 
Sbjct: 252 GIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLA 311

Query: 223 KSTKDKNTGSY-------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
                K    Y             +A++  +++ G  E AR++FN+M   D ++W+++I 
Sbjct: 312 AEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIV 371

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI-WIHDHVKRNSIC 328
           GY ++G    AL+ F  + R   KP +     VL+AC   G +D G+ + H   +++ + 
Sbjct: 372 GYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLV 431

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIEL 384
             A     ++D+ A+ GR   A  + ++M MK + F W +++GG  +HG    A+ A + 
Sbjct: 432 HTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKA 491

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGM 412
            F+++ E    +  T+  + +  A+AG+
Sbjct: 492 LFELEPE----NPATYITLSNIYANAGL 515



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 129/273 (47%), Gaps = 14/273 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H  +++SG   D  V   L+  +   +  +   A  +F+ +   ++  W +++  C 
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDLYG--KCGSLNEARGIFDQMADKDIVSWTTMIHRCF 273

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           E        SL+ +++G   +PN++T+  V  AC+   A++ G +VH ++ + G      
Sbjct: 274 EDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF 333

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
             S+ + +Y+  G    AR++ +   + D++ W +LI GY + G  + A + F+S     
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSG 393

Query: 230 TG----SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA-----IIDGYTKDGYYKEA 280
           T     ++  ++S     G  +   + F+ + +K  +  +A     +ID   + G +KEA
Sbjct: 394 TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEA 453

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
             + + M    +KP KF+ + +L  C   G ++
Sbjct: 454 ENIIDNM---PMKPDKFLWASLLGGCRIHGNIE 483


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 316/576 (54%), Gaps = 57/576 (9%)

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           +  TY  + K C +  A ++   VH HV  NG      + ++ I MY  FG +++AR + 
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 192 DDGSKSDVICWNALI--------------------------------------DGYLKCG 213
           D+    +V+ W  +I                                      DG L   
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR 134

Query: 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK 273
            + G+  + K   + +    +A+I  +++ G   +A  +FNEM   D + W++II G+ +
Sbjct: 135 QLHGS--ILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQ 192

Query: 274 DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           +    E L ++  M+R      +  L+ VL AC  L  L+ G  +H HV +     D +L
Sbjct: 193 NSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLIL 250

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392
             AL+DMY KCG L+ A  +F  M   K+V +W+ MI GLA +G + DA++LF  M+ + 
Sbjct: 251 NNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKG 310

Query: 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            +P+ IT   VL AC+HAG+++ G      M++ +GIDP  EHYGCI+DLLGRAG L EA
Sbjct: 311 PKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEA 370

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QN 498
            ++I  M  EP+A  W  LLGACR H  V+      K +L+++P               +
Sbjct: 371 VKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANS 430

Query: 499 RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
           ++ +DVA++R+ M+ RG+K +PG S I+V+  +H F  GD SHP+++EI   L ++I++L
Sbjct: 431 QKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRL 490

Query: 559 KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCH 618
              GY P+++ VL D++ E+ E + +YHSEKLAI FG ++     TI + KNLR+C DCH
Sbjct: 491 MRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCH 550

Query: 619 SATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              KL+S++  R I++RD +RYHHFR G CSC D+W
Sbjct: 551 IFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 197 SDVICWNALIDGYLKCGDIEGAK----ELFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           +D I ++ LI   L  G ++ A+     +F +  +  T   N +I+ + +FG  +EAR L
Sbjct: 14  ADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNL 73

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F+EM D++ ++W+ +I  Y+      +AL+    M R+ ++P  +  S VL AC  L  L
Sbjct: 74  FDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL 133

Query: 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372
            Q   +H  + +  +  D  + +AL+D Y+K G    A  VF +M   ++  WN++IGG 
Sbjct: 134 RQ---LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGF 190

Query: 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432
           A +   D+ + L+ +M+R     D+ T   VL AC    +++ G Q   ++ +    D +
Sbjct: 191 AQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKY---DQD 247

Query: 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           +     ++D+  + G L +A  + + M  E +   W  ++    ++G
Sbjct: 248 LILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG 294



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 47/377 (12%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           Q  +  H  +  +G+    ++  TL+  +   +F   + A  +F+ +   NV  W +++ 
Sbjct: 33  QQARLVHEHVFSNGYEPKTFLINTLINMYV--KFGLLDEARNLFDEMPDRNVVSWTTMIS 90

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
           A    N   + +     M+    +PN +TY +V +AC   +      Q+H  ++K GL  
Sbjct: 91  AYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC---DGLLNLRQLHGSILKVGLES 147

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           DV V+S+ I  Y+  G  + A  + ++    D++ WN++I G+ +  D +    L+K  K
Sbjct: 148 DVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMK 207

Query: 227 -------------------------------------DKNTGSYNAMISGFARFGRFEEA 249
                                                D++    NA++  + + G  E+A
Sbjct: 208 RADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDA 267

Query: 250 RKLFNE-MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
             LF   M +KD I+WS +I G  ++G+  +AL++F  M+    KP    +  VL AC+ 
Sbjct: 268 NLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSH 327

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTW 365
            G ++ G W +    +    +D        ++D+  + G+LD A K+  +M  + +  TW
Sbjct: 328 AGLVNDG-WYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTW 386

Query: 366 NAMIGGLAMHGRADDAI 382
             ++G   +H   D AI
Sbjct: 387 RILLGACRVHKNVDLAI 403



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 14/252 (5%)

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           ++    M R+++       S ++  C   GA+ Q   +H+HV  N       L   L++M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           Y K G LD A  +F++M  + V +W  MI   +       A++    M RE +RP+  T+
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
           + VL AC   G+++  L+ L       G++ +V     ++D   + G   +A  V + M 
Sbjct: 121 SSVLRAC--DGLLN--LRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM- 175

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNP 520
           +  +  VW +++G   ++ +       G   L +  + +R D VA    L     ++   
Sbjct: 176 ITGDLVVWNSIIGGFAQNSD-------GDETLHLYKRMKRADFVADQSTLTSV--LRACT 226

Query: 521 GSSMIDVNGVIH 532
           G +++++   +H
Sbjct: 227 GLALLELGRQVH 238


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 317/589 (53%), Gaps = 65/589 (11%)

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
           +  P + T+  +  +C+   +  +G+ VH  +V +G   D  + +  I MY   G +++A
Sbjct: 73  EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRA 132

Query: 188 RQILDDGSKSDVICWNAL-------------IDGY------------------------- 209
           R++ D+  +  +  WNAL             +D Y                         
Sbjct: 133 RKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVS 192

Query: 210 -LKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
            L    ++  KE+     +   + N      ++  +A+FG    A  +F  M  K+ ++W
Sbjct: 193 ELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSW 252

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQ---RDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           SA+I  + K+    +ALE+F  M     D + P    +  VL ACA L AL+QG  IH +
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMLEAHDSV-PNSVTMVNVLQACAGLAALEQGKLIHGY 311

Query: 322 VKRNSICVDAVLGT--ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           + R  +  D++L    AL+ MY +CG + M  +VF++MK ++V +WN++I    MHG   
Sbjct: 312 ILRRGL--DSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGK 369

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
            AI++F  M  +   P  I+F  VL AC+HAG+++ G      M   Y I P +EHY C+
Sbjct: 370 KAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACM 429

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN- 498
           VDLLGRA  L EA ++I  M  EP   VW +LLG+CR H  VE  ER   +L E+EP+N 
Sbjct: 430 VDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNA 489

Query: 499 -------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                        +   +   + KL++ RG++  PG S I+V   ++ F + D  +PQ++
Sbjct: 490 GNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIE 549

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           EI+ +L K+  ++K +GY P ++ VL+D+DEEEKE     HSEKLA+AFG INT  G TI
Sbjct: 550 EIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETI 609

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+ KNLR+CEDCH+ TK ISK   R+I+VRD  R+HHF++G CSC D+W
Sbjct: 610 RIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 174/388 (44%), Gaps = 52/388 (13%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H  ++ SG  QD +++  L+  +      + + A KVF+   +  ++VWN++ RA    
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYY--ELGSIDRARKVFDETRERTIYVWNALFRALAMV 157

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD----KEGVQVHAHVVKNGLCGD 167
                ++ LY +M  +    ++FTY  V KAC ++E      ++G ++HAH++++G   +
Sbjct: 158 GCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEAN 217

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
           +HV ++ + +YA FG V+ A  +       + + W+A+I  + K      A ELF     
Sbjct: 218 IHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMML 277

Query: 223 ------------------------------------KSTKDKNTGSYNAMISGFARFGRF 246
                                               +   D      NA+I+ + R G  
Sbjct: 278 EAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEI 337

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              +++F+ M ++D ++W+++I  Y   G+ K+A+++F  M      P       VL AC
Sbjct: 338 LMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGAC 397

Query: 307 ASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT- 364
           +  G +++G I     + +  I         +VD+  +  RLD A K+ EDM  +   T 
Sbjct: 398 SHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTV 457

Query: 365 WNAMIGGLAMHGR---ADDAIELFFKMQ 389
           W +++G   +H     A+ A  L F+++
Sbjct: 458 WGSLLGSCRIHCNVELAERASTLLFELE 485



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 20/303 (6%)

Query: 18  EISATNIPTSEFSQKTILD--ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           +++   IP+  F+   +L   +++    +  Q  K+ HA IL+ G+  + +V  TL+  +
Sbjct: 169 QMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVY 228

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE-PWRVISLYSEMV--GVDSKPN 132
           A  +F +   A  VF ++   N   W++++ AC   NE P + + L+  M+    DS PN
Sbjct: 229 A--KFGSVSYANSVFCAMPTKNFVSWSAMI-ACFAKNEMPMKALELFQLMMLEAHDSVPN 285

Query: 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
             T   V +AC+   A ++G  +H ++++ GL   + V ++ I MY   G +   +++ D
Sbjct: 286 SVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFD 345

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEE 248
           +    DV+ WN+LI  Y   G  + A ++F++   + +     S+  ++   +  G  EE
Sbjct: 346 NMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEE 405

Query: 249 ARKLFNEMNDKDEI-----TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
            + LF  M  K  I      ++ ++D   +     EA+++  +M     +P   V   +L
Sbjct: 406 GKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMH---FEPGPTVWGSLL 462

Query: 304 AAC 306
            +C
Sbjct: 463 GSC 465



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 120/255 (47%), Gaps = 17/255 (6%)

Query: 233 YNAMISGFA--RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290
           YN+ +S      F     +  L N++   +    + +I    K G  K+A+ +       
Sbjct: 21  YNSHVSSRVPVSFVSLNPSANLMNDIKGNN----NQLIQSLCKGGNLKQAIHLLC----C 72

Query: 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350
           +  P +     ++ +CA   +L  G+ +H  +  +    D  L T L++MY + G +D A
Sbjct: 73  EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRA 132

Query: 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410
            KVF++ + + ++ WNA+   LAM G   + ++L+ +M    +  DR T+  VL AC  +
Sbjct: 133 RKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVS 192

Query: 411 GM----IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
            +    + +G +   ++ + +G +  +     ++D+  + G ++ A  V  +MP + N  
Sbjct: 193 ELSVSPLQKGKEIHAHILR-HGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFV 250

Query: 467 VWEALLGACRKHGEV 481
            W A++ AC    E+
Sbjct: 251 SWSAMI-ACFAKNEM 264


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/634 (34%), Positives = 342/634 (53%), Gaps = 65/634 (10%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           AN+ F + E  L         +V +WN+++ A  ++  P   + ++  M+ +   P+  T
Sbjct: 182 ANALFGHLERHL---------DVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVT 232

Query: 136 YPTVFKACSITEADKEGVQV---HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           + +VFKACS + + +   QV   HA + + GL  DV V ++ +  YA  G ++ AR+   
Sbjct: 233 FVSVFKACSSSPSLRAS-QVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFA 291

Query: 193 DGSKSDVICWNALIDGYLKCGDI-----------EGA----KELFKSTKD---------- 227
           +  + + + W ++I  + + G +           EG       LF + +           
Sbjct: 292 EMPERNAVSWTSMIAAFTQIGHLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVARLV 351

Query: 228 ----------KNTGSYNAMISGFARFGRFEEARKLFN--EMNDKDEITWSAIIDGYTKDG 275
                      +      ++  +AR    E+A ++F+  E  + D    +A+I  Y +  
Sbjct: 352 EAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCR 411

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLG 334
             +   +++       I P + +    L ACASL AL +G  IH  V  +  +  D  LG
Sbjct: 412 DRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLG 471

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            A+V MY +CG L  A   F+ M  ++  +WNAM+   A HGR +D  +LF  M +E   
Sbjct: 472 NAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFD 531

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
            +RI F  +LSACAHAG++  G +  + M   +G+ P  EHYGC+VDLLGR G LA+A  
Sbjct: 532 AERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHG 591

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           ++ +MP+ P+AA W AL+GACR +G+ E G    + +LE+   +               R
Sbjct: 592 IVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGR 651

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            DD A +RK+M + G++  PG S I++   +HEF   D SHPQ + IY  L++++  ++ 
Sbjct: 652 WDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIER 711

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY   + +VL D++EE+KE   ++HSEKLAIAFG ++T  G+T+RVIKNLRVC DCH+A
Sbjct: 712 AGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNA 771

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +K ISKVF R+I+VRD  R+HHF++G CSC D+W
Sbjct: 772 SKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 194/469 (41%), Gaps = 61/469 (13%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           +D Y++ +LV  +   R  + E A+ VF+ +   ++ +W  ++ A +        I+L+ 
Sbjct: 60  RDGYLASSLVYMYL--RCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFH 117

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
            ++      +   + +V  ACS  E    G  +H   V+ GL     V S+ + MY   G
Sbjct: 118 RILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCG 177

Query: 183 CVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAKELF------------------- 222
            +  A  +     +  DV+ WNA+I    + G    A E+F                   
Sbjct: 178 SLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVF 237

Query: 223 ------------------KSTKDKNTGS----YNAMISGFARFGRFEEARKLFNEMNDKD 260
                                 +   GS      A+++ +AR G  + ARK F EM +++
Sbjct: 238 KACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERN 297

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL--GALDQGIWI 318
            ++W+++I  +T+ G+   A+E F+ M  + + P +  L   L  C  L    L + I  
Sbjct: 298 AVSWTSMIAAFTQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAI-- 354

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI--GGLAMHG 376
               +   +  D  + T LV  YA+C   + A +VF     +E   W+A +    +A++ 
Sbjct: 355 ---AQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVF---SAREEGEWDAALVTAMIAVYA 408

Query: 377 RADD---AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           +  D     +L+       + PDRI +   L ACA    +  G Q    +     +D +V
Sbjct: 409 QCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDV 468

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
                IV + G+ G L +A +    MP     + W A+L A  +HG VE
Sbjct: 469 TLGNAIVSMYGQCGSLRDARDAFDGMPARDEIS-WNAMLSASAQHGRVE 516



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           ++++  + R G  E A  +F+++  K  + W+ +I  Y   G+   A+ +F+ + ++ I 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
               V   VL+AC+S   L  G  IH       + +  ++ +ALV MY +CG L  A  +
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANAL 185

Query: 354 FEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           F  + +  +V  WNAMI   + +G   +A+E+F++M +  + PD +TF  V  AC+ +  
Sbjct: 186 FGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPS 245

Query: 413 IDRGLQALTYMQQM--YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           + R  Q   +   +   G+  +V     +V+   R G +  A +  + MP E NA  W +
Sbjct: 246 L-RASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMP-ERNAVSWTS 303

Query: 471 LLGACRKHGEVEFGERLGKILLE 493
           ++ A  + G +   E    +LLE
Sbjct: 304 MIAAFTQIGHLLAVETFHAMLLE 326


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/658 (32%), Positives = 334/658 (50%), Gaps = 56/658 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ HA +LK G   +   +  LV     +++   + AL+VF  + + +   WNS+L   +
Sbjct: 287 RELHAALLKCGSELNIQCNALLV---MYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYV 343

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +++     I  + EM+    +P+     ++  A         G + HA+ +K  L  D+ 
Sbjct: 344 QNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQ 403

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V ++ + MY   G +  + ++ +     D I W  ++  + +      A E+    + + 
Sbjct: 404 VGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEG 463

Query: 230 T-------GSY-------------------------------NAMISGFARFGRFEEARK 251
                   GS                                N +I  +   G F+ +  
Sbjct: 464 IMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLN 523

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LF  +  KD ++W+++I+  T +G    A+ +F EMQ+  I+P    L  +L A A L +
Sbjct: 524 LFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSS 583

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L +G  +H  + R +  ++  + ++LVDMY+ CG ++ A +VFE  K K+V  W AMI  
Sbjct: 584 LTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINA 643

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             MHG    AI+LF +M +  + PD ++F  +L AC+H+ +++ G   L  M   Y + P
Sbjct: 644 TGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKP 703

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
             EHY C+VD+LGR+G   EA E I +MPM+P +AVW ALLGACR H            L
Sbjct: 704 WQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKL 763

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           LE+EP N               + ++  + R  M ERG++ NP  S I++   IH F +G
Sbjct: 764 LELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSG 823

Query: 538 DGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGF 596
           D  H   + I+L L +I E L+ E GY  ++  VL D  EEEK      HSE++AIAFG 
Sbjct: 824 DYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGL 883

Query: 597 INTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I+T PG  IR+ KNLRVC DCH  TKL+SK+F+RDI+VRD  R+HHF  G CSC DFW
Sbjct: 884 ISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/524 (22%), Positives = 235/524 (44%), Gaps = 72/524 (13%)

Query: 50  KQAHAVILKSGHFQ---DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           +Q HA  + +G      D +++  LV  +   R    + A ++FN +    VF WN+++ 
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYG--RCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 107 ACLEHNEPWRVISLYSEM---VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           A L        + +Y  M       S P+  T  +V KAC      + G +VH   VK G
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLKCGDIEGAKEL 221
           L     V ++ I MYA  G ++ A ++ +       DV  WN+++ G ++ G    A  L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 222 FKSTKDKN--TGSY------------------------------------NAMISGFARF 243
           F+  +       SY                                    NA++  +A++
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKY 314

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           GR + A ++F ++ +KD I+W++++  Y ++ +Y EA++ F EM +   +P    +  + 
Sbjct: 315 GRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLS 374

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           +A   L  L+ G   H +  +  +  D  +G  L+DMY KCG ++ + KVFE M +++  
Sbjct: 375 SALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHI 434

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           +W  ++   A   R  +A+E+  ++Q+E +  D +    +L  C        GL++++ +
Sbjct: 435 SWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC-------GLKSISLL 487

Query: 424 QQMYG-------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           +Q++        +D  +E+   ++D+ G  G    +  +   +  + +   W +++  C 
Sbjct: 488 KQVHCYAIRNGLLDLILENR--LIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCT 544

Query: 477 KHGEVEFGERLGKILL--EMEPQNRRCDDVAKMRKLMKERGIKT 518
            +G +      G + L  EM+  N + D VA +  L+   G+ +
Sbjct: 545 NNGRLN-----GAVFLFTEMQKANIQPDSVALVSILVAIAGLSS 583



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 20/285 (7%)

Query: 34  ILDILNTKCHT-SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           I  IL T C   S   LKQ H   +++G   D  +   L+  +       F+ +L +F  
Sbjct: 471 IGSILETCCGLKSISLLKQVHCYAIRNG-LLDLILENRLIDIYGEC--GEFDHSLNLFQR 527

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEG 152
           V K ++  W S++  C  +      + L++EM   + +P+     ++  A +   +  +G
Sbjct: 528 VEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKG 587

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212
            QVH  +++     +  V SS + MY+  G +N A ++ +     DV+ W A+I+     
Sbjct: 588 KQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMH 647

Query: 213 GDIEGAKELFKSTKDKNTG------SYNAMISGFARFGRFEEARKLFNEMNDKDEIT--- 263
           G  + A +LFK  +   TG      S+ A++   +     EE +   + M  K  +    
Sbjct: 648 GHGKQAIDLFK--RMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQ 705

Query: 264 --WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
             ++ ++D   + G  +EA E    M  D   P+  V   +L AC
Sbjct: 706 EHYACVVDILGRSGQTEEAYEFIKTMPMD---PKSAVWCALLGAC 747


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/657 (32%), Positives = 348/657 (52%), Gaps = 58/657 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H + +K G  ++  V+  +V  ++   + N   A   F   +  NV  WN+++ A     
Sbjct: 271 HGLAVKLGLSEEVMVNNAMVYMYSKCGYLN--EAQMSFVKNNNKNVVSWNTMISAFSLEG 328

Query: 113 EPWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +     +L  EM   G + K N+ T   V  AC      +   ++H +  ++     V +
Sbjct: 329 DVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVEL 387

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL-FKSTKDKN 229
            ++ I  YA  G +N A ++        V  WNALI G+ + GD   A  L F+ T    
Sbjct: 388 SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ 447

Query: 230 TGSY--------------------------------------NAMISGFARFGRFEEARK 251
              +                                       +++S +   G+   AR 
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           LF+ M DK+ ++W+A+I GY+++G   E+L +F +   + I+  +  +  V  AC+ L A
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L  G   H +V +     DA +G +++DMYAK G +  + KVF+ +K K V +WNA+I  
Sbjct: 568 LRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVA 627

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
             +HG   +AIEL+ +M++    PDR T+  +L AC HAG+++ GL+    MQ    I+P
Sbjct: 628 HGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEP 687

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
           ++EHY C++D+L RAG L +A  +++ MP E +  +W +LL +CR  G +E GE++ K L
Sbjct: 688 KLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKL 747

Query: 492 LEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537
           LE+EP                 + D V ++R++MKE G++ + G S I+V G ++ F  G
Sbjct: 748 LELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVG 807

Query: 538 DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFI 597
           D   P+  EI ++ +++ E++   GY PN+S VL ++ EEEK    + HSEKLAI+FG +
Sbjct: 808 DSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLL 867

Query: 598 NTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            T  G T+R+ KNLR+C DCH+A KLISK  +R+I+VRD  R+HHFR+G CSC D+W
Sbjct: 868 KTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 206/430 (47%), Gaps = 68/430 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGT-LVKCHA------NSRFSNFELALKVFNSVHKPNVFVWN 102
           ++ H  +  S H+++ YV  T L+K +A      +SR         VF+++   N+  WN
Sbjct: 63  RRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRL--------VFDNMETKNLIQWN 114

Query: 103 SVLRACLEHNEPWRVISLYSEMVG-VDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +++     +     V+ ++ ++V   D +P+ FT+P+V KAC      + G  +H  V+K
Sbjct: 115 ALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIK 174

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-------- 213
            GL  DV V ++ + MY   G V++A ++ D   +++++ WN++I  + + G        
Sbjct: 175 MGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDL 234

Query: 214 --DIEGAKELF---------------KSTKDKNTGSY---------------NAMISGFA 241
             ++ G + L                +   D   G +               NAM+  ++
Sbjct: 235 LMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYS 294

Query: 242 RFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM--QRDKIKPRKFVL 299
           + G   EA+  F + N+K+ ++W+ +I  ++ +G   EA  +  EM  Q +++K  +  +
Sbjct: 295 KCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTI 354

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLDMAWKVFEDMK 358
             VL AC     L     +H +  R+  C   V L  A +  YAKCG L+ A KVF  + 
Sbjct: 355 LNVLPACLDKLQLRSLKELHGYSFRH--CFQHVELSNAFILAYAKCGALNSAEKVFHGIG 412

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            K V +WNA+IGG A +G    A+ L F+M     +PD  T + +L ACAH       L+
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH-------LK 465

Query: 419 ALTYMQQMYG 428
           +L Y ++++G
Sbjct: 466 SLQYGKEIHG 475



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 15/296 (5%)

Query: 212 CG---DIEGAKELFK----STKDKNTGSYNA-MISGFARFGRFEEARKLFNEMNDKDEIT 263
           CG   DIE  + L K    ST  +N    N  +I  +A  G   ++R +F+ M  K+ I 
Sbjct: 53  CGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQ 112

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHV 322
           W+A++ GYT++G Y + ++VF ++  D   +P  F    V+ AC  +  +  G  IH  V
Sbjct: 113 WNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMV 172

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382
            +  + +D  +G ALV MY KCG +D A KVF+ M    + +WN+MI   + +G + D+ 
Sbjct: 173 IKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSF 232

Query: 383 ELFFKM-QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +L  +M   E + PD +T   +L  CA  G +D G+  +  +    G+  EV     +V 
Sbjct: 233 DLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGM-GIHGLAVKLGLSEEVMVNNAMVY 291

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
           +  + GYL EA+          N   W  ++ A    G+V     L   L EM+ Q
Sbjct: 292 MYSKCGYLNEAQMSFVK-NNNKNVVSWNTMISAFSLEGDVNEAFNL---LQEMQIQ 343



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 201/438 (45%), Gaps = 61/438 (13%)

Query: 13  HLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQ--HLKQAHAVILKSGHFQDHYVSGT 70
            ++ EE+ A  +        TIL++L   C    Q   LK+ H    +   FQ   +S  
Sbjct: 341 QIQGEEMKANEV--------TILNVL-PACLDKLQLRSLKELHGYSFRHC-FQHVELSNA 390

Query: 71  LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK 130
            +  +A  +      A KVF+ +    V  WN+++    ++ +P + + L  +M     +
Sbjct: 391 FILAYA--KCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQ 448

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           P+ FT  ++  AC+  ++ + G ++H +V++NGL  D  V +S +  Y   G  + AR +
Sbjct: 449 PDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVL 508

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN---------------- 234
            D     +++ WNA+I GY + G    +  LF+ +  +   S+                 
Sbjct: 509 FDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSAL 568

Query: 235 -----------------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                                  ++I  +A+ G  +E+RK+F+ + DK+  +W+AII  +
Sbjct: 569 RLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAH 628

Query: 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331
              G+ KEA+E++  M++    P +F    +L AC   G +++G+     ++  ++    
Sbjct: 629 GIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPK 688

Query: 332 VLGTA-LVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           +   A L+DM A+ GRLD A ++  +M +  +   W++++      G    A+E+  K+ 
Sbjct: 689 LEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFG----ALEIGEKVA 744

Query: 390 RE--KMRPDRITFACVLS 405
           ++  ++ PD+     +LS
Sbjct: 745 KKLLELEPDKAENYVLLS 762



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 182/413 (44%), Gaps = 57/413 (13%)

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG-LCGDVHVKSSGI 175
           +I  +S+     S   K     + +AC   +  + G ++H  V  +     D  + +  I
Sbjct: 27  LIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLI 86

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG----------------DIEGAK 219
           +MYA  G    +R + D+    ++I WNAL+ GY + G                D +   
Sbjct: 87  KMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDN 146

Query: 220 ELFKSTKDKNTGSY------------------------NAMISGFARFGRFEEARKLFNE 255
             F S      G                          NA++  + + G  +EA K+F+ 
Sbjct: 147 FTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDF 206

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLGALDQ 314
           M + + ++W+++I  ++++G+ +++ ++  EM   + + P    +  +L  CA  G +D 
Sbjct: 207 MPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDI 266

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G+ IH    +  +  + ++  A+V MY+KCG L+ A   F     K V +WN MI   ++
Sbjct: 267 GMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSL 326

Query: 375 HGRADDAIELFFKM--QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGID-- 430
            G  ++A  L  +M  Q E+M+ + +T   VL AC     +D+ LQ L  +++++G    
Sbjct: 327 EGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC-----LDK-LQ-LRSLKELHGYSFR 379

Query: 431 ---PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
                VE     +    + G L  AE+V   +  +   + W AL+G   ++G+
Sbjct: 380 HCFQHVELSNAFILAYAKCGALNSAEKVFHGIG-DKTVSSWNALIGGHAQNGD 431


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/656 (32%), Positives = 352/656 (53%), Gaps = 54/656 (8%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q H V++K+G  +   VS +L+  +   +  N   A  +F+     +V  WNS++     
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           +      + ++  M     + ++ ++ ++ K C+  +  +   Q+H  VVK G   D ++
Sbjct: 277 NGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNI 336

Query: 171 KSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           +++ +  Y+ C   ++  R   + G   +V+ W A+I G+L+    E A  LF   K K 
Sbjct: 337 RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKG 396

Query: 229 ---NTGSYN-------------------------------AMISGFARFGRFEEARKLFN 254
              N  +Y+                               A++  + + G+ +EA K+F+
Sbjct: 397 VRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFS 456

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA-LD 313
            +++KD + WSA++ GY + G  + A+++F+E+ +  +KP +F  S +L  CA+  A + 
Sbjct: 457 GIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMG 516

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           QG   H    ++ +     + +AL+ MYAK G ++ A +VF+  + K++ +WN+MI G A
Sbjct: 517 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYA 576

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG+A  A+++F +M++ K++ D +TF  V +AC HAG+++ G +    M +   I P  
Sbjct: 577 QHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 636

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EH  C+VDL  RAG L +A +VI +MP    + +W  +L ACR H + E G    + ++ 
Sbjct: 637 EHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIA 696

Query: 494 MEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           M P++                  + AK+RKLM ER +K  PG S I+V    + F  GD 
Sbjct: 697 MIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDR 756

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           SHP   +IY+ L+ +  +LK  GY P++S VL DID+E KE     HSE+LAIAFG I T
Sbjct: 757 SHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 816

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHF-RNGKCSCNDFW 654
             G+ + +IKNLRVC DCH   KLI+K+ +R+I+VRD  R+HHF  +G CSC DFW
Sbjct: 817 PKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 222/480 (46%), Gaps = 65/480 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H   +K G   D  V  +LV  +     SNF+    VF+ + + NV  W +++    
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKG--SNFKDGRNVFDEMKERNVVTWTTLISGYA 174

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            ++    V++L+  M    ++PN FT+       +       G+QVH  VVKNGL   + 
Sbjct: 175 RNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIP 234

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-DIEGAKELFKSTK-- 226
           V +S I +Y   G V KAR + D      V+ WN++I GY   G D+E A  +F S +  
Sbjct: 235 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE-ALGMFYSMRLN 293

Query: 227 ---------------------------------------DKNTGSYNAMISGFARFGRFE 247
                                                  D+N  +  A++  +++     
Sbjct: 294 HVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT--ALMVAYSKCMAML 351

Query: 248 EARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           +A +LF E     + ++W+A+I G+ ++   +EA+ +F+EM+R  ++P +F  S +L A 
Sbjct: 352 DALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL 411

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
             +   +    +H  V + +    + +GTAL+D Y K G++D A KVF  +  K++  W+
Sbjct: 412 PVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AM+ G A  G  + AI++F ++ +  ++P+  TF+ +L+ CA          ++   +Q 
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAAT------TASMGQGKQF 521

Query: 427 YG------IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           +G      +D  +     ++ +  + G++  AEEV      E +   W +++    +HG+
Sbjct: 522 HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQ 580



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 167/373 (44%), Gaps = 49/373 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV-HKPNVFVWNSVLRAC 108
           +Q H  ++K G   D  +   L+  +  S+      AL++F       NV  W +++   
Sbjct: 319 EQLHCSVVKYGFVFDQNIRTALMVAY--SKCMAMLDALRLFKETGFLGNVVSWTAMISGF 376

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           L+++     + L+SEM     +PN+FTY  +  A  +        +VHA VVK       
Sbjct: 377 LQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSS 432

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------ 222
            V ++ +  Y   G V++A ++       D++ W+A++ GY + G+ E A ++F      
Sbjct: 433 TVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKG 492

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             KS  D +    +A+++ +A+ G  E 
Sbjct: 493 GVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIES 552

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A ++F    +KD ++W+++I GY + G   +AL+VF EM++ K+K        V AAC  
Sbjct: 553 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTH 612

Query: 309 LGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWN 366
            G +++G    D + R+  I       + +VD+Y++ G+L+ A KV ++M  +     W 
Sbjct: 613 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWR 672

Query: 367 AMIGGLAMHGRAD 379
            ++    +H + +
Sbjct: 673 TILAACRVHKKTE 685



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 139/291 (47%), Gaps = 31/291 (10%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
            +++  + +   F++ R +F+EM +++ +TW+ +I GY ++   +E L +F  MQ +  +
Sbjct: 136 TSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQ 195

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F  +  L   A  G   +G+ +H  V +N +     +  +L+++Y KCG +  A  +
Sbjct: 196 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 255

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413
           F+  ++K V TWN+MI G A +G   +A+ +F+ M+   +R    +FA ++  CA+    
Sbjct: 256 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN---- 311

Query: 414 DRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLG 473
              L+ L + +Q++     V  YG + D   R   +    + +             A+L 
Sbjct: 312 ---LKELRFTEQLH---CSVVKYGFVFDQNIRTALMVAYSKCM-------------AMLD 352

Query: 474 ACRKHGEVEFGERLGKI-----LLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
           A R   E  F   LG +     ++    QN   ++   +   MK +G++ N
Sbjct: 353 ALRLFKETGF---LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPN 400



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 167/394 (42%), Gaps = 60/394 (15%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           + +V K  +    +  G Q+H   +K G   DV V +S +  Y         R + D+  
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF--------------------------------- 222
           + +V+ W  LI GY +    E    LF                                 
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 223 ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                 K+  DK     N++I+ + + G   +AR LF++   K  +TW+++I GY  +G 
Sbjct: 220 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 279

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EAL +F  M+ + ++  +   + ++  CA+L  L     +H  V +     D  + TA
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTA 339

Query: 337 LVDMYAKCGRLDMAWKVFEDMK-MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           L+  Y+KC  +  A ++F++   +  V +W AMI G   +   ++A+ LF +M+R+ +RP
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRP 399

Query: 396 DRITFACVLSAC-------AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
           +  T++ +L+A         HA ++    +  + +               ++D   + G 
Sbjct: 400 NEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGT------------ALLDAYVKLGK 447

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           + EA +V S +    +   W A+L    + GE E
Sbjct: 448 VDEAAKVFSGID-NKDIVAWSAMLAGYAQAGETE 480



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
           G A   R   A  LF++  D+D  ++++++ G+++DG  +EA  +F  +Q   ++    +
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S VL   A+L     G  +H    +     D  +GT+LVD Y K         VF++MK
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            + V TW  +I G A +   ++ + LF +MQ E  +P+  TFA  L   A  G+  RGLQ
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
             T + +  G+D  +     +++L  + G + +A  +     ++ +   W +++     +
Sbjct: 220 VHTVVVK-NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAAN 277

Query: 479 G 479
           G
Sbjct: 278 G 278



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 158/355 (44%), Gaps = 22/355 (6%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+    +  +EF+   IL  L     +      + HA ++K+ + +   V   L+  +  
Sbjct: 391 EMKRKGVRPNEFTYSVILTALPVISPS------EVHAQVVKTNYERSSTVGTALLDAYV- 443

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
            +    + A KVF+ +   ++  W+++L    +  E    I ++SE+     KPN+FT+ 
Sbjct: 444 -KLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFS 502

Query: 138 TVFKACSITEADK-EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
           ++   C+ T A   +G Q H   +K+ L   + V S+ + MYA  G +  A ++     +
Sbjct: 503 SILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQRE 562

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKL 252
            D++ WN++I GY + G    A ++FK  K +    ++ ++  + +     G  EE  K 
Sbjct: 563 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKY 622

Query: 253 FNEMNDKDEITW-----SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           F+ M    +I       S ++D Y++ G  ++A++V + M          +   +LAAC 
Sbjct: 623 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPN---LAGSTIWRTILAACR 679

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
                + G    + +    I  D+     L +MYA+ G      KV + M  + V
Sbjct: 680 VHKKTELGRLAAEKIIA-MIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 733


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/620 (33%), Positives = 338/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +++S    D YV+  L++ +A  +  +F+ A +VFNS+   N   W  ++   L
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 347

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+++M       ++F   T+   C        G Q+H+  +K+G     H
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-----H 402

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                          N+A           ++  N+LI  Y KCGD++ A+ +F S  +++
Sbjct: 403 ---------------NRA-----------IVVSNSLISLYAKCGDLQNAEFVFSSMSERD 436

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+ +++ G   +AR+ F+ M+ ++ ITW+A++  Y + G  ++ L++++ M  
Sbjct: 437 IVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            K + P       +   CA +GA   G  I  H  +  + ++  +  A + MY+KCGR+ 
Sbjct: 497 QKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS 556

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A K+F+ +  K+V +WNAMI G + HG    A + F  M  +  +PD I++  VLS C+
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M +++GI P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 677 GALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 736

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++V   +H F+  D SHPQV  I   L +++EK+   GY           
Sbjct: 737 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYV---------- 786

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
              E   +  +HSEKLA+AFG ++      I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 787 -RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 845

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF++G CSC D+W
Sbjct: 846 RDGVRFHHFKSGSCSCGDYW 865



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  Y  CG +  A+ L ++  K+ N  ++N M++G+A+ G   +A +L
Sbjct: 34  GLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEEL 93

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGA 311
           F+ M  +D  +W+ ++ GY +   + + LE F  M R     P  F   CV+ +C +LG 
Sbjct: 94  FDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV------------------ 353
            +    +     +     D  + TALVDM+ +CG +D A ++                  
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 354 -------------FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                        FEDM  ++V +WN MI  L+  GR  +A+ L  +M R+ +R D  T+
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +++L  + G   EA+ V +S+
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSL 331

Query: 460 PMEPNAAVWEALLGACRKH 478
             + N+  W  L+G   ++
Sbjct: 332 Q-DRNSVSWTVLIGGSLQY 349



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 187/439 (42%), Gaps = 63/439 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACS 144
           A ++F+ + + +V  WN+++    +       +  +  M    DS PN FT+  V K+C 
Sbjct: 90  AEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCG 149

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                +   Q+     K    GD  V++                               A
Sbjct: 150 ALGCRELAPQLLGLFWKFDFWGDPDVET-------------------------------A 178

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+D +++CG ++ A  LF   +       N+M++G+A+    + A + F +M ++D ++W
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +I   ++ G  +EAL +  EM R  ++      +  L ACA L +L  G  +H  V R
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           +   +D  + +AL+++YAKCG    A +VF  ++ +   +W  +IGG   +     ++EL
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E M  D+   A ++S C +   +  G Q L  +    G +  +     ++ L  
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYA 417

Query: 445 RAGYLAEAEEVISSMPMEP------------------------------NAAVWEALLGA 474
           + G L  AE V SSM                                  NA  W A+LGA
Sbjct: 418 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGA 477

Query: 475 CRKHGEVEFGERLGKILLE 493
             +HG  E G ++   +L 
Sbjct: 478 YIQHGAEEDGLKMYSAMLS 496



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-DM 357
           L+  L +C S GAL     +H  +    +     L   L+  Y  CG L  A ++   D+
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR----------------------- 394
           K   V T N M+ G A  G   DA ELF +M R  +                        
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 395 ---------PDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLG 444
                    P+  TF CV+ +C   G  +   Q L    +  +  DP+VE    +VD+  
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET--ALVDMFV 184

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG---EVEFGERLGK-------ILLEM 494
           R GY+  A  + S +           L G  + +G    +E+ E + +       +++  
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
             Q+ R  +   +   M  +G++ +  +    +      F  G G     K I
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI 297


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/637 (35%), Positives = 331/637 (51%), Gaps = 93/637 (14%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS------NFELALKVFNSVHKPN 97
           T   HL+Q HAV+L++       +  + V  H  SR +      +   + +VF+    P 
Sbjct: 22  TGKLHLRQIHAVLLRTS-----LIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPT 76

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVH 156
           +   N+++RA      P     L+  +    S P N  +     K C  +     G+Q+H
Sbjct: 77  LSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIH 136

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
                                           +I  DG  SD +    L+D Y  C +  
Sbjct: 137 G-------------------------------KIFSDGFLSDSLLMTTLMDLYSTCEN-- 163

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                  ST                      +A K+F+E+  +D ++W+ +I  Y ++  
Sbjct: 164 -------ST----------------------DACKVFDEIPQRDTVSWNVLISCYLRNKR 194

Query: 277 YKEALEVFNEMQRDK---IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
            ++ L +F++M+ D    +KP        L ACA+LGALD G  +HD +  N +     L
Sbjct: 195 TRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNL 254

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
              LV MY++CG +D A++VF  M+ + V +W AMI GLAM+G   +AIE F +M +  +
Sbjct: 255 SNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGI 314

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQ-MYGIDPEVEHYGCIVDLLGRAGYLAEA 452
            P+  T   +LSAC+H+G++D G+     M+   + I P + HYGCIVDLLGRA  L +A
Sbjct: 315 SPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKA 374

Query: 453 EEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------------- 499
             +I SM M+P++ +W  LLGACR HG VE GER+   L+E + +               
Sbjct: 375 YSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSV 434

Query: 500 -RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKL 558
            + + V ++R LMK++ I+TNPG S I++ G +HEF   D SHP+ +EIY ML +I ++L
Sbjct: 435 GKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQL 494

Query: 559 KMEGYSPNSSQVLFDID-EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDC 617
           K+ GY    +  L ++D EEEK  A +YHSEKLAIAFG + T P  TIRV KNLR C DC
Sbjct: 495 KIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDC 554

Query: 618 HSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           H+  K +S V+ R +IVRDR R+HHF+ G CSCNDFW
Sbjct: 555 HNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 319/573 (55%), Gaps = 74/573 (12%)

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACF--------GCVNKARQILDDGSKSDVICW 202
           + +Q+HA ++K+G     H    G   +  F        G +N AR IL      +   +
Sbjct: 8   QAMQLHARILKSGAYDSNH----GQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYY 63

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGS----------YNAMI-----SGFARFGR-- 245
           N +I  Y    D   A  LF   ++ +  S          Y  ++     SG ARFG+  
Sbjct: 64  NTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQI 123

Query: 246 ----FEE------------------------ARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
               F+                         A K+F++M D+D ++W++IIDG+  +   
Sbjct: 124 HGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRP 183

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            EA+ +F  M  + I+P +  ++ VL ACA  GAL+ G  IH  VK  +   +A + TAL
Sbjct: 184 IEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTAL 243

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +DMYAKCG +D A +VF++   K+V+ W A+I GLA HG    AIE F  M++  ++ D 
Sbjct: 244 IDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDE 303

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
                VLSA  +AG++  GL     +++ + I P ++HYGC+VD+L RAG L +AEE I 
Sbjct: 304 RAITAVLSAYRNAGLVSEGLLFFRRLKK-HKIKPTIQHYGCVVDMLTRAGRLKDAEEFIR 362

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL--LEMEPQNR--------------RC 501
            MP+EP+A +W  L+  C+  G+VE  ERL + L  L M+ ++               + 
Sbjct: 363 KMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKW 422

Query: 502 DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME 561
           ++ AK R+LM +RG+   P  S I+++GV+HEF  GD  H +   +Y  L+ + E+L+ E
Sbjct: 423 EEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGE 482

Query: 562 GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSAT 621
           GY+P  S+VL +ID++EK +   +HSEKLA++FG + + PG+ IR++KNLR CEDCHS  
Sbjct: 483 GYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFM 542

Query: 622 KLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           KLISKV++RDIIVRDR+R+HHF  G CSC D W
Sbjct: 543 KLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 180/401 (44%), Gaps = 54/401 (13%)

Query: 44  TSWQHLKQAHAVILKSG-----HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98
           TS     Q HA ILKSG     H QD +    L    A S   +   A  +  ++H PN 
Sbjct: 4   TSMTQAMQLHARILKSGAYDSNHGQDFH---KLFTFSALSPSGDLNYARHILRTLHTPNS 60

Query: 99  FVWNSVLRACLEHNEPWRVISLYSEMVGVDS------KPNKFTYPTVFKACSITEADKEG 152
           F +N+++RA  +  +P R  +L+  M   D       +P+ FTYP V KACS +   + G
Sbjct: 61  FYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFG 120

Query: 153 VQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL-- 210
            Q+H  V K+G+  D ++ ++ I +Y+  G  N A ++ D     DV+ W ++IDG++  
Sbjct: 121 KQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDN 180

Query: 211 ------------------------------KCGD---IEGAKELFKSTKDKNTGS----Y 233
                                          C D   +   + +    K+KN  S     
Sbjct: 181 DRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVS 240

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
            A+I  +A+ G  + A ++F+E  +KD   W+AII G    G   +A+E F  M++  +K
Sbjct: 241 TALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVK 300

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
             +  ++ VL+A  + G + +G+     +K++ I         +VDM  + GRL  A + 
Sbjct: 301 MDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEF 360

Query: 354 FEDMKMK-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
              M ++ +   W  +I G  + G  + +  L  +++   M
Sbjct: 361 IRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNM 401



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 34/323 (10%)

Query: 16  PEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
           P++ S        F+   +L   +   H  +   KQ H ++ KSG   D Y++  L+  +
Sbjct: 89  PDDASVAVPRPDHFTYPFVLKACSKSGHARFG--KQIHGLVFKSGVGSDRYINNALIHLY 146

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           + S   N  LA KVF+ +   +V  W S++   ++++ P   I L++ M+    +PN+ T
Sbjct: 147 SVSGEPN--LAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVT 204

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
             +V +AC+ T A   G ++H+ V +     + +V ++ I MYA  GC++ A ++ D+  
Sbjct: 205 VASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETL 264

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255
           + DV  W A+I G    G    A E F++ K  +                          
Sbjct: 265 EKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDV------------------------- 299

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
               DE   +A++  Y   G   E L  F  +++ KIKP      CV+      G L   
Sbjct: 300 --KMDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDA 357

Query: 316 IWIHDHVKRNSICVDAVLGTALV 338
               + +++  I  DAVL   L+
Sbjct: 358 ---EEFIRKMPIEPDAVLWRTLI 377



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 15/218 (6%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL+VF+   + +V+VW +++     H    + I  +  M   D K ++     V  A   
Sbjct: 256 ALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRN 315

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNA 204
                EG+     + K+ +   +      + M    G +  A + +     + D + W  
Sbjct: 316 AGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRT 375

Query: 205 LIDGYLKCGDIEGAKELFKSTK-----DKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           LI G    GD+E ++ L +  +      ++TGSY  + + +A  G++EE  K    M  +
Sbjct: 376 LIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQR 435

Query: 260 --------DEITWSAIIDGYTK-DGYYKEALEVFNEMQ 288
                     I    ++  +T  D  + EA  V+ +++
Sbjct: 436 GLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLE 473


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/647 (31%), Positives = 347/647 (53%), Gaps = 60/647 (9%)

Query: 62  FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLY 121
           +Q + +    VKC    R      A KVF+ + + NV  W ++++        + V+ L+
Sbjct: 70  YQINSLINLYVKCGETVR------ARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLF 123

Query: 122 SEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
             MV  D S+PN+F    VFK+CS +   +EG Q H   +K+GL     V+++ + MY+ 
Sbjct: 124 KSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSL 183

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI-EGAKELFKSTKD------------ 227
                +A ++LDD    D+  +++ + GYL+CG   EGA+ L +  K+            
Sbjct: 184 CSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSC 243

Query: 228 ----KNTGSYN----------------------AMISGFARFGRFEEARKLFNEMNDKDE 261
                N    N                      A+I+ + + G+   A+++F+  + ++ 
Sbjct: 244 LRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNI 303

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +  + I+D Y +D  ++EAL +F++M   ++ P ++  +  L + A L  L  G  +H  
Sbjct: 304 VLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGL 363

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           V ++      ++G ALV+MYAK G ++ A K F  M  +++ TWN MI G + HG   + 
Sbjct: 364 VLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREG 423

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           +E F +M      P+RITF  VL AC+H G +++GL     + + + + P+++HY CIV 
Sbjct: 424 LEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVG 483

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK------------ 489
           LL +AG   +AE+ + + P+E +   W ALL AC        G+++ +            
Sbjct: 484 LLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGV 543

Query: 490 --ILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
             +L  +  ++R  + VA++R LM +RG+K  PG S I +    H F   +  HP++  I
Sbjct: 544 YVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLI 603

Query: 548 YLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRV 607
           Y  +K+++ K++  GYSP+ + V  D+DEE++E    YHSEKLA+A+G + T   + + V
Sbjct: 604 YAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYV 663

Query: 608 IKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            KN+R+C+DCHSA KLISK+ KR I++RD  R+HHFR+G+CSC D+W
Sbjct: 664 TKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 135/260 (51%), Gaps = 7/260 (2%)

Query: 200 ICWNALIDGYLKCGD-IEGAKELF-KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           +C N+    YL+ G+ I G   +  +S++ K+    N++I+ + + G    ARK+F+ M 
Sbjct: 40  VCANS---SYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMP 96

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAACASLGALDQGI 316
           +++ ++W A++ GY   G+  E L++F  M   D+ +P +FV + V  +C+S G +++G 
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGK 156

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
             H    ++ +     +   LV MY+ C     A +V +D+   ++  +++ + G    G
Sbjct: 157 QFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              +  E+  +M +E +  D IT+   L  C++   ++   Q  + M ++ G + EVE  
Sbjct: 217 AFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRL-GFNSEVEAS 275

Query: 437 GCIVDLLGRAGYLAEAEEVI 456
           G I+++ G+ G +  A+ V 
Sbjct: 276 GAIINMYGKCGKVLYAQRVF 295



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 51/367 (13%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK----CHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           KQ H   LKSG     +V  TLV     C  N        A++V + +   ++ V++S L
Sbjct: 156 KQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGE------AIRVLDDLPYCDLSVFSSAL 209

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC 165
              LE         +   M   D   +  TY +  + CS         Q+H+ +V+ G  
Sbjct: 210 SGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFN 269

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS- 224
            +V    + I MY   G V  A+++ D+    +++    ++D Y +    E A  LF   
Sbjct: 270 SEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKM 329

Query: 225 -TKDKNTGSY-------------------------------------NAMISGFARFGRF 246
            TK+     Y                                     NA+++ +A+ G  
Sbjct: 330 DTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSI 389

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           E+ARK F+ M  +D +TW+ +I G++  G  +E LE F+ M      P +     VL AC
Sbjct: 390 EDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQAC 449

Query: 307 ASLGALDQGIWIHDHV-KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFT 364
           + +G ++QG++  + + K+ ++  D    T +V + +K G    A        ++ +V  
Sbjct: 450 SHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVA 509

Query: 365 WNAMIGG 371
           W A++  
Sbjct: 510 WRALLNA 516



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 177/429 (41%), Gaps = 53/429 (12%)

Query: 121 YSEMVGVDSKPNKFTYPT-----VFKACSITEADKEGVQVHAHVV---KNGLCGDVHVKS 172
           + ++  +  KP K  +P      + K C+ +   + G  +H H++   ++    DV+  +
Sbjct: 14  WDKLASLVPKPKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQIN 73

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-DIEGAKELFKSTKDKNTG 231
           S I +Y   G   +AR++ D   + +V+ W A++ GY   G D E  K LFKS    +  
Sbjct: 74  SLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLK-LFKSMVFSDES 132

Query: 232 SYNAMISGF-----ARFGRFEEAR-----------------------------------K 251
             N  ++       +  GR EE +                                   +
Sbjct: 133 RPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIR 192

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           + +++   D   +S+ + GY + G +KE  EV   M ++ +          L  C++L  
Sbjct: 193 VLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRD 252

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG 371
           L+    IH  + R     +     A+++MY KCG++  A +VF++   + +     ++  
Sbjct: 253 LNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDA 312

Query: 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP 431
                  ++A+ LF KM  +++ P+  TFA  L++ A   ++  G   L  +    G   
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHG-DLLHGLVLKSGYRN 371

Query: 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG-ERLGKI 490
            V     +V++  ++G + +A +  S M    +   W  ++     HG    G E   ++
Sbjct: 372 HVMVGNALVNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMICGFSHHGLGREGLEAFDRM 430

Query: 491 LLEMEPQNR 499
           ++  E  NR
Sbjct: 431 MIAGEIPNR 439



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 32/263 (12%)

Query: 24  IPTSEFSQKTILDILNTKCHTSW-QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSN 82
           +P +E+   T    LN+    S  +H    H ++LKSG+     V   LV  +A S   +
Sbjct: 334 VPPNEY---TFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKS--GS 388

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            E A K F+ +   ++  WN+++     H      +  +  M+     PN+ T+  V +A
Sbjct: 389 IEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQA 448

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-GCVNKARQILD--DGSKS-- 197
           CS     ++G+        N L    +V+   +Q Y C  G ++KA    D  D  ++  
Sbjct: 449 CSHVGFVEQGLYYF-----NQLMKKFNVQPD-LQHYTCIVGLLSKAGMFKDAEDFMRTAP 502

Query: 198 ---DVICWNALIDG-----YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE-- 247
              DV+ W AL++        + G       ++K   D  +G Y  + +  A+   +E  
Sbjct: 503 IEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPND--SGVYVLLSNIHAKSREWEGV 560

Query: 248 -EARKLFNEMNDKDE--ITWSAI 267
            E R L N+   K E  ++W  I
Sbjct: 561 AEVRSLMNKRGVKKEPGVSWIGI 583


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 314/574 (54%), Gaps = 61/574 (10%)

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY---------P 137
           L +F   +  + F  N +LR  L H  P R+             P+ FT+          
Sbjct: 83  LLLFRCSNCTSAFASNHLLR-VLPHPLPLRLFPRLPR-----RNPHSFTFLLASLSNHLD 136

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           T   A     +   G  VHA  VK G  GD++V+++ I  Y                   
Sbjct: 137 TEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV----------------- 179

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKD-KNTGSYNAMISGFARFGRFEEARKLFNEM 256
                         CGD+   +++F      ++  ++NA+++G+ R G    AR++F+ M
Sbjct: 180 --------------CGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
             +DE++WS +I GY K+G  + AL VF  M    +K  +  +   L+A A LG L+QG 
Sbjct: 226 PVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK 285

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
           ++H+ VKR  + +   LG AL+DMY+KCG +  A +VF+ M  ++VF WN+MI GLA HG
Sbjct: 286 FVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHG 345

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436
              DA++LF K   E   P  ITF  VL+AC+  G++D G +    M + Y I+ E+EHY
Sbjct: 346 LGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHY 405

Query: 437 GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496
           GC+VDLL RAG + EA E+I  M + P+  +W  +L AC++HG V+ G  +G  L+E++P
Sbjct: 406 GCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDP 465

Query: 497 QN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHP 542
            +              ++ D+V K+RKLM  RG   + G S+++ +G++H+F  GD +H 
Sbjct: 466 AHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHK 525

Query: 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPG 602
               IY ML  I  +L   GY P+ S VL DI +EEK  A K HSE+LAIA+GFI  + G
Sbjct: 526 DSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAG 585

Query: 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRD 636
           + IR++KNL VC DCH  +K+++KVF R+I+VRD
Sbjct: 586 SPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRD 619



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
           +A +VF+ +   +   W++V+   ++  EP   + ++  MV    K N+    T   A +
Sbjct: 217 VAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAA 276

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                ++G  VH  V + G+   V++ ++ I MY+  G V  A+++ D   + DV  WN+
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 205 LIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
           +I G    G    A +LF+    +     + ++  +++  +R G  +E R+ F  M +K 
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 261 EIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +I      +  ++D  ++ G  +EA+E+   M   +I P   +   +L+AC   G +D G
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGM---RIPPDPVLWGTILSACKRHGLVDLG 453

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDM 357
           I + + +       D      L  +YAK  + D   KV + M
Sbjct: 454 ITVGNKLIELDPAHDGYY-VLLASIYAKAKKWDEVRKVRKLM 494



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H V+ + G      +   L+  +  S+  +   A +VF+++ + +VF WNS++    
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMY--SKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H      + L+ + V     P   T+  V  ACS T    EG +         L  + +
Sbjct: 343 THGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK------LMAEKY 396

Query: 170 VKSSGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALID-----GYLKCGDIE 216
              S ++ Y C        G V +A ++++      D + W  ++      G +  G   
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259
           G K +       + G Y  + S +A+  +++E RK+   M+++
Sbjct: 457 GNKLI--ELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNR 497


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/623 (33%), Positives = 332/623 (53%), Gaps = 55/623 (8%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  I K G+    +V   LV  +A + F N   A ++F  + + N+ V+N+++   L
Sbjct: 158 RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIN--DANRIFEEIPEKNIVVYNTMITGLL 215

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                     L+  M   DS     ++ T+    +     KE V     +   G C D  
Sbjct: 216 RCRFIVEAEQLFDNMPEKDS----ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQF 271

Query: 170 VKSSGIQMYACFGCVNKARQI----LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
              S +     F  +++ +QI    +    + ++   +AL+D Y KC +++ A+ +F+  
Sbjct: 272 TFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKM 331

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           + KN                                I+W+A++ GY ++GY +EA+ +F 
Sbjct: 332 RHKNV-------------------------------ISWTAMLVGYGQNGYSEEAVRIFC 360

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
           +MQR++I P  F L  V+++CA+L +L++G   H     + +     +  AL+ +Y KCG
Sbjct: 361 DMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCG 420

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
            L+ A ++F +MK+++  +W A++ G A  G+A++ I LF  M    + PD +TF  VLS
Sbjct: 421 SLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLS 480

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC+ AG++++G      M + + I P  +HY C++DLL RAG L EA+  I+ MP  P+A
Sbjct: 481 ACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDA 540

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511
             W  LL +CR +G +E G+   + L ++EPQN               + DDVAK+RK M
Sbjct: 541 IGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGM 600

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           +E G+K  PG S I     +H F   D S P   +IY  L+ +  K+  EGY P+ S VL
Sbjct: 601 REMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVL 660

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
            D+++ EK     +HSEKLAIAFG +    G  IRV+KNLRVC DCH+ATK IS++ +R+
Sbjct: 661 HDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQRE 720

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I+VRD VR+H F++G CSC DFW
Sbjct: 721 ILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 219/441 (49%), Gaps = 19/441 (4%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
            +K+ H  I+++    + ++   L+  +   +  + + A  VF+ + +PN+F WN++L A
Sbjct: 23  QVKKLHCRIIRTLTNPETFLYNNLINTYG--KLGDLKNARNVFDHIPQPNLFSWNTLLSA 80

Query: 108 CLEHNEPWRVISLYSEMVGV-DSKPNK--FTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
                  +  +    +M  V DS PN    ++ ++    +      E V+V+  ++K+G 
Sbjct: 81  -------YSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGS 133

Query: 165 CGDVHVK-SSGIQMYACFGCVNKAR----QILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
                +  S+ + + +  G V+  R    QI   G +S +   + L+D Y K G I  A 
Sbjct: 134 VNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDAN 193

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
            +F+   +KN   YN MI+G  R     EA +LF+ M +KD I+W+ II G T++G +KE
Sbjct: 194 RIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKE 253

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
           A++ F EM  +     +F    VL AC    ALD+G  IH ++ R     +  +G+AL+D
Sbjct: 254 AVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLD 313

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KC  +  A  VF  M+ K V +W AM+ G   +G +++A+ +F  MQR ++ PD  T
Sbjct: 314 MYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              V+S+CA+   ++ G Q         G+   V     ++ L G+ G L  A ++   M
Sbjct: 374 LGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 460 PMEPNAAVWEALLGACRKHGE 480
            +    + W AL+    + G+
Sbjct: 433 KIRDEVS-WTALVSGYAQFGK 452



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 37/347 (10%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
           +I+   +  +   +N LI+ Y K GD++ A+ +F      N  S+N ++S +++ G  ++
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQD 89

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACA 307
            +++F+ M + D ++W++++ GY  +G   E++ V+N M +D  +   +   S +L   +
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSS 149

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE------------ 355
           + G +D G  IH  + +        +G+ LVDMYAK G ++ A ++FE            
Sbjct: 150 NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209

Query: 356 -------------------DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
                              +M  K+  +W  +I GL  +G   +A++ F +M  E    D
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
           + TF  VL+AC     +D G Q   Y+ +    D  +     ++D+  +   +  AE V 
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD-NIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDD 503
             M    N   W A+L     +G+  + E   +I  +M+      DD
Sbjct: 329 RKM-RHKNVISWTAMLVG---YGQNGYSEEAVRIFCDMQRNEIHPDD 371


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 318/584 (54%), Gaps = 69/584 (11%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKC-----------HA 76
           EF Q  +L    + C  S + +KQ HA I+K+   +       +  C           H 
Sbjct: 26  EFPQLLLL----SSC-KSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHL 80

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW-RVISLYSEMVGVDSKPNKFT 135
                N   A  + N  H+  V+++N+++++    N  +  + SLY +M+ +   P+ +T
Sbjct: 81  ADSIQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYT 140

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
            P + KACS + A  E +Q+HAH +K GL  ++ VK++ ++ YA  G +    ++ D G 
Sbjct: 141 LPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGP 200

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF---KSTKDKNT-----------GSY-------- 233
             D+I W  LI  Y K G    A   F     T D+ T           G +        
Sbjct: 201 HWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILA 260

Query: 234 ----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277
                           NA++  + + G+   AR+LF+ M  K+ ++W+++I G    G +
Sbjct: 261 YMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLF 320

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           KEAL +F  MQ   +KP    L  VL +CA+LG L+ G W+H ++ +N +  D  +  AL
Sbjct: 321 KEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANAL 380

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           VDMYAKCG +D A+ VF+ MK K+V+++ AMI G AMHG+AD A+ +F +M R  +RPD 
Sbjct: 381 VDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDH 440

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           +T   VLSAC+HAG+++ G +    M ++Y + P+ EHYGC+VDLLGRAG ++EAE   +
Sbjct: 441 VTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTN 500

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDD 503
            MP+ P+A+VW +LLGAC+ H +VE GE + + L+EMEP+                R  D
Sbjct: 501 KMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRD 560

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
             K RK MK+  IK  PG S I+V+G++HEFR G+ SHP+ +E+
Sbjct: 561 ALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 340/625 (54%), Gaps = 63/625 (10%)

Query: 88  KVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147
           +VF+ + +  V VW  ++    +       + L+ +M+    +P+++T  ++  AC+   
Sbjct: 210 RVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELG 269

Query: 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA---CFGCVNKARQILDDGSKSDVICWNA 204
           + + G Q+H+  ++ GL  D  V    + MYA       ++ AR++ +   K +V+ W A
Sbjct: 270 SFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTA 329

Query: 205 LIDGYLK------------------------------------CGDIEGAKELFKSTKDK 228
           L+ GY++                                     GD +  +++       
Sbjct: 330 LLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKS 389

Query: 229 NTGSY----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
           N        NA++S +A  G  EEAR  F+++ +K+ +++S  +DG  +   Y++     
Sbjct: 390 NLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD----- 444

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
            +++R ++    F    +++A AS+G L +G  +H    +     D  +G +LV MY++C
Sbjct: 445 YQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRC 504

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L  A +VF++M    V +W +MI GLA HG A  A+ELF  M    ++P+ +T+  VL
Sbjct: 505 GYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVL 564

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
           SAC+HAG++  G +    MQ+ +G+ P +EHY C+VDLLGR+G + +A + I+ MP + +
Sbjct: 565 SACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVD 624

Query: 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKMRKL 510
           A VW+ LLGAC+ H  ++ GE     ++++EPQ+                 D VA++R L
Sbjct: 625 ALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSL 684

Query: 511 MKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQV 570
           M+++ +    G S + V+  IHEFR GD SHPQ +EIY  L+ +I ++K+ GY P++S V
Sbjct: 685 MRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVV 744

Query: 571 LFDIDEEEKETAPKYHSEKLAIAFGFIN-TDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           L D+ +E KE     HSEK+A+AFG I+ T     IR+ KNLRVC DCHSA K +SK   
Sbjct: 745 LHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATG 804

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+II+RD  R+H  ++G+CSC ++W
Sbjct: 805 REIILRDSNRFHRMKDGECSCGEYW 829



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 229/516 (44%), Gaps = 68/516 (13%)

Query: 48  HLKQA-HAVILKSGHF--QDHYVSGTLVKCHANSRFSNFELALKVFNS--VHKPNVFVWN 102
           HL +A    +L++G     D  V+ +L+  +  S+ S    A  VF+   V   ++  W 
Sbjct: 64  HLGRALQGHLLRTGSLLETDAVVANSLLTLY--SKCSAVAAARSVFDGMPVGLRDLVSW- 120

Query: 103 SVLRACLEHN-EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEA-DKEGVQVHAHVV 160
           + + +CL  N      + L+ E +     PN FT     +AC  +E     G  V   V 
Sbjct: 121 TAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVF 180

Query: 161 KNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
           K G  G DV V  + I M+A  G +   R++ D   +  V+ W  LI  Y + G  + A 
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 220 ELFKSTKDK----NTGSYNAMISGFARFGRFE---------------------------- 247
           ELF    +     +  + ++M+S     G F                             
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMY 300

Query: 248 ----------EARKLFNEMNDKDEITWSAIIDGYTKDGYY-KEALEVFNEMQRDKIKPRK 296
                      AR++FN M   + + W+A++ GY + G    + + +F +M  + I+P  
Sbjct: 301 AKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNH 360

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
              S +L ACA+LG  D G  IH H  ++++    V+G ALV MYA+ G ++ A   F+ 
Sbjct: 361 ITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQ 420

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           +  K + +++   G L   GR++   +  ++++R ++     TF  ++SA A  GM+ +G
Sbjct: 421 LYEKNMVSFS---GNLDGDGRSNTYQD--YQIERMELGISTFTFGSLISAAASVGMLTKG 475

Query: 417 --LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             L AL+ ++  +G D  + +   +V +  R GYL +A +V   M  + N   W +++  
Sbjct: 476 QRLHALS-LKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISG 531

Query: 475 CRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510
             KHG   +  R  ++  +M     + +DV  +  L
Sbjct: 532 LAKHG---YAARALELFHDMIAAGVKPNDVTYIAVL 564



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 169/368 (45%), Gaps = 38/368 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANS-RFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +Q H++ L+ G   D  VS  LV  +A S    +   A +VFN + K NV  W ++L   
Sbjct: 275 QQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGY 334

Query: 109 LEH-NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           ++  ++  +V+ L+ +M+    +PN  TY ++ KAC+       G Q+H H VK+ L   
Sbjct: 335 VQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADL 394

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG------------------- 208
             V ++ + MYA  G + +AR   D   + +++ ++  +DG                   
Sbjct: 395 NVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQIERMELGI 454

Query: 209 -----------YLKCGDIEGAKELFKSTKDKNTGS----YNAMISGFARFGRFEEARKLF 253
                          G +   + L   +     GS     N+++S ++R G   +A ++F
Sbjct: 455 STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVF 514

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           +EMND + I+W+++I G  K GY   ALE+F++M    +KP       VL+AC+  G + 
Sbjct: 515 DEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVK 574

Query: 314 QGIWIHDHVKRNSICVDAVLGTA-LVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGG 371
           +G      ++++   +  +   A +VD+  + G ++ A     +M  + +   W  ++G 
Sbjct: 575 EGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGA 634

Query: 372 LAMHGRAD 379
              H   D
Sbjct: 635 CKTHNNMD 642


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/664 (30%), Positives = 350/664 (52%), Gaps = 56/664 (8%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           S   + Q H  ++K G+     V  +L+  +  +R  +  LA  +F  + + +   +N++
Sbjct: 154 SVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTR--SLGLACHLFKHMAEKDNVTFNAL 211

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           L    +       I+L+ +M  +  +P++FT+  V  A    +  + G QVH+ VVK   
Sbjct: 212 LTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF 271

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             +V V ++ +  Y+    + +AR++  +  + D I +N LI      G +E + ELF+ 
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRE 331

Query: 225 TK----DKNTGSY-----------------------------------NAMISGFARFGR 245
            +    D+    +                                   N+++  +A+  +
Sbjct: 332 LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDK 391

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           F EA ++F ++  +  + W+A+I GY + G +++ L++F EM R KI       + +L A
Sbjct: 392 FGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRA 451

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA+L +L  G  +H  + R+    +   G+ALVDMYAKCG +  A ++F++M ++   +W
Sbjct: 452 CANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSW 511

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NA+I   A +G    A+  F +M    ++P+ ++F  +L AC+H G+++ GLQ    M Q
Sbjct: 512 NALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQ 571

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +Y ++P  EHY  +VD+L R+G   EAE++++ MP EP+  +W ++L +CR H   E   
Sbjct: 572 VYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAI 631

Query: 486 RLGKILLEMEPQNRRC---------------DDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
           +    L  M+                     D V K++K ++ERGI+  P  S +++   
Sbjct: 632 KAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQK 691

Query: 531 IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
            H F   D SHPQ KEI   L ++ ++++ +GY P+S+  L ++DEE K  + KYHSE++
Sbjct: 692 THVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERI 751

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           AIAF  I+T  G+ I V+KNLR C DCH+A K+ISK+  R+I VRD  R+HHF +G CSC
Sbjct: 752 AIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSC 811

Query: 651 NDFW 654
            D+W
Sbjct: 812 KDYW 815



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 139/281 (49%), Gaps = 2/281 (0%)

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           +N  +  +L+ GD+  A++LF     KN  S N MI G+ + G    AR LF+ M  +  
Sbjct: 45  FNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSV 104

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           +TW+ +I GY +   + EA  +F +M R  + P    L+ +L+      ++++   +H H
Sbjct: 105 VTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGH 164

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           V +       ++  +L+D Y K   L +A  +F+ M  K+  T+NA++ G +  G   DA
Sbjct: 165 VVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDA 224

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441
           I LFFKMQ    RP   TFA VL+A      I+ G Q  +++ +   +   V     ++D
Sbjct: 225 INLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFV-WNVFVANALLD 283

Query: 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
              +   + EA ++   MP E +   +  L+  C  +G VE
Sbjct: 284 FYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVE 323



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 158/358 (44%), Gaps = 24/358 (6%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHAN 77
           E+  T     +F   T+L I     +      +Q H+  + +    +  V  +LV  +A 
Sbjct: 331 ELQFTRFDRRQFPFATLLSIAANSLNLEMG--RQIHSQAIVTDAISEVLVGNSLVDMYA- 387

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM----VGVDSKPNK 133
            +   F  A ++F  +   +   W +++   ++       + L+ EM    +G DS    
Sbjct: 388 -KCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSA--- 443

Query: 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193
            TY ++ +AC+   +   G Q+H+ ++++G   +V   S+ + MYA  G + +A Q+  +
Sbjct: 444 -TYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE 502

Query: 194 GSKSDVICWNALIDGYLKCGD----IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEA 249
               + + WNALI  Y + GD    +   +++  S    N+ S+ +++   +  G  EE 
Sbjct: 503 MPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEG 562

Query: 250 RKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
            + FN M    ++      +++++D   + G + EA ++   M R   +P + + S +L 
Sbjct: 563 LQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKL---MARMPFEPDEIMWSSILN 619

Query: 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           +C      +  I   D +       DA    ++ ++YA  G  D   KV + ++ + +
Sbjct: 620 SCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGI 677


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 316/564 (56%), Gaps = 54/564 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y T+ K C++ +   +G  VHAH++++    D+ + ++ + MYA  G + +AR++ +   
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 196 KSDVICWNALIDGY----------------LKCGDIEGAKELFKSTK------------- 226
           + D + W  LI GY                L+ G       L    K             
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 227 ----------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                     D N    +A++  + R+G  ++A+ +F+ +  +++++W+A+I G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            ++ALE+F  M RD  +P  F  + +  AC+S G L+QG W+H ++ ++   + A  G  
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMYAK G +  A K+F+ +  ++V +WN+++   A HG   +A+  F +M+R  +RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I+F  VL+AC+H+G++D G      M++  GI PE  HY  +VDLLGRAG L  A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP+EP AA+W+ALL ACR H   E G    + + E++P +               R +
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           D A++RK MKE G+K  P  S +++   IH F   D  HPQ +EI    ++++ K+K  G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P++S V+  +D++E+E   +YHSEK+A+AF  +NT PG+TI + KN+RVC DCH+A K
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 623 LISKVFKRDIIVRDRVRYHHFRNG 646
           L SKV  R+IIVRD  R+HHF++ 
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDA 625



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 192/417 (46%), Gaps = 50/417 (11%)

Query: 2   STKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQA---HAVILK 58
           S K  + DL       ++  + IP       T+L     KC T ++ L Q    HA IL+
Sbjct: 34  SLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLL----KKC-TVFKLLIQGRIVHAHILQ 88

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           S    D  +  TL+  +A  +  + E A KVF  + + +   W +++    +H+ P   +
Sbjct: 89  SIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 146

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
             +++M+     PN+FT  +V KA +       G Q+H   VK G   +VHV S+ + +Y
Sbjct: 147 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------------- 223
             +G ++ A+ + D     + + WNALI G+ +    E A ELF+               
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 224 -------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFNEMNDK 259
                  ST     G +                 N ++  +A+ G   +ARK+F+ +  +
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR 326

Query: 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH 319
           D ++W++++  Y + G+ KEA+  F EM+R  I+P +     VL AC+  G LD+G   +
Sbjct: 327 DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT-WNAMIGGLAMH 375
           + +K++ I  +A     +VD+  + G L+ A +  E+M ++     W A++    MH
Sbjct: 387 ELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           N+++   I   +   + +L  C     L QG  +H H+ ++    D V+G  L++MYAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G L+ A KVFE M  ++  TW  +I G + H R  DA+  F +M R    P+  T + V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            A A       G Q   +  +  G D  V     ++DL  R G + +A+ V  ++    N
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR-N 226

Query: 465 AAVWEALL-GACRKHG 479
              W AL+ G  R+ G
Sbjct: 227 DVSWNALIAGHARRSG 242


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/635 (34%), Positives = 335/635 (52%), Gaps = 59/635 (9%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
            S +   + HA  +++G  QD  V   L + +A S     +LA+ +      P    + S
Sbjct: 41  ASARRASELHAAAVRAGVDQDKAVDFRLQRAYAAS--GRLDLAVALLRRTPDPTAVFYTS 98

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
            + A          ++L SEM+      P   T      AC        G  +H + VK 
Sbjct: 99  AIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLAV---GRALHGYAVKL 155

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
            L G+ +V ++ + MYA       A ++L DG +                          
Sbjct: 156 ALSGEPYVATALLGMYARA-GDAAAARVLFDGMQ-------------------------- 188

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
               D +  S  AM++ +A+ G  ++AR LF+ +  KD I W+A++DGYT+ G   EAL 
Sbjct: 189 ---PDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALR 245

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS---ICVDAVLGTALVD 339
           +F  M R  ++P +  +   L+A A LG  + G W+H  V  +S   + ++A +GTAL+D
Sbjct: 246 LFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALID 305

Query: 340 MYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           MY KCG L+ A  VF D+    +++  WNAM+ G AMHG + +A+  F +++ + + P  
Sbjct: 306 MYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTD 365

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           ITF  VL+AC+H+G++D G +    M + YGI+P+VEHYGC+VDLLGRAG + EA E++ 
Sbjct: 366 ITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQ 425

Query: 458 SMP-MEPNAAVWEALLGACRKHGEVEFGERLGK--------------ILLEMEPQNRRCD 502
           SM   +P+A +W +LL ACR H  +E G+R+                +L  M        
Sbjct: 426 SMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWR 485

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           +V ++R +M+  GI+  PG S ++V   + EF  GD SHP+  EIY  L+++    +  G
Sbjct: 486 EVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARG 545

Query: 563 YSPNS---SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
           + P +      L D D   KE A   HSEKLA+AFG I+T PG  I+++KNLR C DCH+
Sbjct: 546 HVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHA 605

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             KL+S+V  R I+ RDR R+HHF +G C+C D+W
Sbjct: 606 VLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/432 (43%), Positives = 262/432 (60%), Gaps = 26/432 (6%)

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            R LF+++   +   W+ +I G   +  + +A+E +  M+ +   P  F    VL ACA 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 309 LGALDQGI---------WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           L  L  G+         WIH  +    +  +  +GT+LVDMYAKCG ++ A  VF+ M  
Sbjct: 125 LLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 184

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK---MRPDRITFACVLSACAHAGMIDRG 416
           K++ +W AMI G A++G   +AI+LF +MQRE    ++PD  TF  +L  C HAG++D G
Sbjct: 185 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEG 244

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
            +    M + + + P +EHYGC+VDLLGRAG L EA ++I +MPME NA VW ALLGACR
Sbjct: 245 RRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACR 304

Query: 477 KHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGS 522
            H + +  E   K L+E+EP N               + D+ AK+R  M E+ I+  PG 
Sbjct: 305 IHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGC 364

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S I+V+G++HEF  GD  HP  ++IY  L ++ +K+K+ GY P +  VLFDI+EEEKE  
Sbjct: 365 SWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHF 424

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSEKLAIAFG I+  P A IRV+KNLRVC DCH A KLIS +  R+I VRD  R+H 
Sbjct: 425 LGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHC 484

Query: 643 FRNGKCSCNDFW 654
           FR G CSCND+W
Sbjct: 485 FREGSCSCNDYW 496



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 60/323 (18%)

Query: 58  KSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV 117
           + G   D+Y+   +++C  +  FS+      +F+ + +PN+F+WN+++R  + ++     
Sbjct: 39  RFGLCHDNYLLNMILRCSFD--FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDA 96

Query: 118 ISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
           I  Y  M      PN FT+P V KAC+     + GV++H  VVK               +
Sbjct: 97  IEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKE-------------WI 143

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237
           + C         I++ G   +V    +L+D Y KCG++E                     
Sbjct: 144 HKC---------IMEMGMVRNVFVGTSLVDMYAKCGNME--------------------- 173

Query: 238 SGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK---IKP 294
                     +AR +F+ M +KD ++W A+I GY  +G  KEA+++F +MQR+    IKP
Sbjct: 174 ----------KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKP 223

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKR-NSICVDAVLGTALVDMYAKCGRLDMAWKV 353
                  +L  C   G +D+G    + + R  S+         +VD+  + G LD A ++
Sbjct: 224 DGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQL 283

Query: 354 FEDMKMK-EVFTWNAMIGGLAMH 375
             +M M+     W A++G   +H
Sbjct: 284 IRNMPMEANAIVWGALLGACRIH 306



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 34  ILDI-LNTKCHT----SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALK 88
           +LD+ L  K HT     W      H  I++ G  ++ +V  +LV  +A  +  N E A  
Sbjct: 125 LLDLQLGVKIHTLVVKEW-----IHKCIMEMGMVRNVFVGTSLVDMYA--KCGNMEKARS 177

Query: 89  VFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-----VGVDSKPNKFTYPTVFKAC 143
           VF+ + + ++  W ++++    +  P   I L+ +M     +G+  KP+  T+  +   C
Sbjct: 178 VFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGI--KPDGNTFIGLLCGC 235

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQILDDGS- 195
           +      EG +    + +          +  I+ Y C        G +++A Q++ +   
Sbjct: 236 THAGLVDEGRRYFNSMYR------FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM 289

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKDK---NTGSYNAMISGFARFGRFEEARKL 252
           +++ I W AL+       D + A+   K   +    N+G+Y  + + ++   +++EA K+
Sbjct: 290 EANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKV 349

Query: 253 FNEMNDK 259
              MN+K
Sbjct: 350 RLSMNEK 356


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/612 (33%), Positives = 324/612 (52%), Gaps = 54/612 (8%)

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156
           N+  W +++    ++++    I  +  M      P +F + +  +AC+   + + G Q+H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
              +K G+  ++ V S+   MY+  G +  A ++ ++    D + W A+IDGY K G+ E
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 124

Query: 217 GAKELFKSTKDKNT--------------GSY-------------------------NAMI 237
            A   FK   D+                G+                          NA+ 
Sbjct: 125 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 184

Query: 238 SGFARFGRFEEARKLFN-EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
             +++ G  E A  +F  +   ++ ++++ +IDGY +    ++ L VF E++R  I+P +
Sbjct: 185 DMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 244

Query: 297 FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356
           F  S ++ ACA+  AL+QG  +H  V + +   D  + + LVDMY KCG L+ A + F++
Sbjct: 245 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE 304

Query: 357 MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           +       WN+++     HG   DAI++F +M    ++P+ ITF  +L+ C+HAG+++ G
Sbjct: 305 IGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEG 364

Query: 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACR 476
           L     M + YG+ P  EHY C++DLLGRAG L EA+E I+ MP EPNA  W + LGACR
Sbjct: 365 LDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACR 424

Query: 477 KHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGS 522
            HG+ E G+   + L+++EP+N              R+ +DV  +R  M++  +K  PG 
Sbjct: 425 IHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGY 484

Query: 523 SMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETA 582
           S +DV    H F   D SHP+   IY  L  +++++K  GY P +  V  D+D+  KE  
Sbjct: 485 SWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKL 544

Query: 583 PKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
              HSE++A+AF  I+   G  I V KNLRVC DCHSA K ISKV  R IIVRD  R+HH
Sbjct: 545 LHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHH 604

Query: 643 FRNGKCSCNDFW 654
           F +G CSC D+W
Sbjct: 605 FTDGSCSCGDYW 616



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 46/272 (16%)

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M  ++ ++W+A+I G +++  + EA+  F  M+     P +F  S  + ACASLG+++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             +H    +  I  +  +G+ L DMY+KCG +  A KVFE+M  K+  +W AMI G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACA-----------HAGMIDRGLQ------ 418
           G  ++A+  F KM  E++  D+      L AC            H+ ++  G +      
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 419 -ALTYM----------QQMYGIDPE---VEHYGCIVDLLGRAGYLAEAEEV--------- 455
            ALT M            ++GID E   V  Y C++D     GY+ E E++         
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLID-----GYV-ETEQIEKGLSVFVE 234

Query: 456 ISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
           +    +EPN   + +L+ AC     +E G +L
Sbjct: 235 LRRQGIEPNEFTFSSLIKACANQAALEQGTQL 266



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 153/369 (41%), Gaps = 44/369 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ H + LK G   + +V   L   +  S+      A KVF  +   +   W +++    
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMY--SKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 118

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +  E    +  + +M+  +   ++    +   AC   +A K G  VH+ VVK G   D+ 
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 178

Query: 170 VKSSGIQMYACFGCVNKARQILD-DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK-- 226
           V ++   MY+  G +  A  +   D    +V+ +  LIDGY++   IE    +F   +  
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 227 --DKNTGSYNAMISG-----------------------------------FARFGRFEEA 249
             + N  +++++I                                     + + G  E+A
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQA 298

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            + F+E+ D  EI W++++  + + G  K+A+++F  M    +KP       +L  C+  
Sbjct: 299 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 310 GALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G +++G+ + +   K   +       + ++D+  + GRL  A +    M  +   F W +
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 418

Query: 368 MIGGLAMHG 376
            +G   +HG
Sbjct: 419 FLGACRIHG 427



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 15/276 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN-SVHKPNVFVWNSVLRAC 108
           +  H+ ++K G   D +V   L   +  S+  + E A  VF       NV  +  ++   
Sbjct: 162 RSVHSSVVKLGFESDIFVGNALTDMY--SKAGDMESASNVFGIDSECRNVVSYTCLIDGY 219

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +E  +  + +S++ E+     +PN+FT+ ++ KAC+   A ++G Q+HA V+K     D 
Sbjct: 220 VETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDP 279

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V S  + MY   G + +A Q  D+      I WN+L+  + + G  + A ++F+   D+
Sbjct: 280 FVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDR 339

Query: 229 ----NTGSYNAMISGFARFGRFEEARKLFNEMNDK-----DEITWSAIIDGYTKDGYYKE 279
               N  ++ ++++G +  G  EE    F  M+        E  +S +ID   + G  KE
Sbjct: 340 GVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKE 399

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           A E  N M     +P  F     L AC   G  + G
Sbjct: 400 AKEFINRM---PFEPNAFGWCSFLGACRIHGDKEMG 432


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/629 (33%), Positives = 313/629 (49%), Gaps = 83/629 (13%)

Query: 40   TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF 99
            + C+ S Q  +     IL+SG ++   +   L+  H   R    E A  VF+ +   +V 
Sbjct: 549  SSCYCS-QEAQVLRMCILESG-YRSACLETALISMHGRCR--ELEQARSVFDEMDHGDVV 604

Query: 100  VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV 159
             W +++ A  E+ +   V  L+  M      P+KFT  T    C  +     G  +HA V
Sbjct: 605  SWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACV 664

Query: 160  VKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK 219
             + GL                               ++D+   NAL++ Y  CGD     
Sbjct: 665  TEIGL-------------------------------EADIAVENALLNMYSNCGD----- 688

Query: 220  ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
                                      + EA   F  M  +D ++W+ +   Y + G  KE
Sbjct: 689  --------------------------WREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 280  ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339
            A+ +F  MQ + +KP K   S  L        +  G   H     + +  D  + T LV 
Sbjct: 723  AVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVK 782

Query: 340  MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
            +YAKCG+LD A  +F       V   NA+IG LA HG +++A+++F+KMQ+E +RPD  T
Sbjct: 783  LYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 400  FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
               ++SAC HAGM++ G  +   M++ +GI P +EHY C VDLLGRAG L  AE++I  M
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 460  PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVA 505
            P E N  VW +LLG C+  G+ E GER  + +LE++P N               +  D  
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 506  KMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
              RK + ++ +K  PG S +++   +HEF  GD SHPQ  EIY++L K+   ++  GY  
Sbjct: 963  VDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEA 1022

Query: 566  NSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLIS 625
            +      D ++E KE A  YHSE++AIAFG I T P  T++++KNLRVC DCH+ATK IS
Sbjct: 1023 DKG---LDAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYIS 1079

Query: 626  KVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             +  R+IIVRD +R+HHF NG CSC D W
Sbjct: 1080 MIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 232/527 (44%), Gaps = 55/527 (10%)

Query: 33  TILDILNTKCHTS--WQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVF 90
           T++ ILN    +   +   ++ H  I +SG+ +D  V   ++  +A   F  F  A  VF
Sbjct: 336 TLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGF--FSAAWTVF 393

Query: 91  NSVH-KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD 149
             +  K +V  WN++L A  +     +V++ +  M+     PNK ++  +  ACS +EA 
Sbjct: 394 RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEAL 453

Query: 150 KEGVQVHAHVV-KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNALI 206
             G ++H+ ++ +     +  V +  + MY   G + +A  +  +       ++ WN ++
Sbjct: 454 DFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVML 513

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSY--------------------------------- 233
             Y +    + +KE F +  +   G                                   
Sbjct: 514 GAYAQN---DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYR 570

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                 A+IS   R    E+AR +F+EM+  D ++W+A++    ++  +KE   +F  MQ
Sbjct: 571 SACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQ 630

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + + P KF L+  L  C     L  G  IH  V    +  D  +  AL++MY+ CG   
Sbjct: 631 LEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWR 690

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A   FE MK +++ +WN M    A  G A +A+ LF  MQ E ++PD++TF+  L+   
Sbjct: 691 EALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSG 750

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
            + ++  G +    +    G+D +V     +V L  + G L EA  +      +    + 
Sbjct: 751 GSALVSDG-KLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRG-ACQWTVVLL 808

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERG 515
            A++GA  +HG   F E   K+  +M+ +  R  DVA +  ++   G
Sbjct: 809 NAIIGALAQHG---FSEEAVKMFWKMQQEGVR-PDVATLVSIISACG 851



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 209/476 (43%), Gaps = 56/476 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+AH +I  +G  Q  ++   L+  +   R  + E A  +F+ + + NV  W +++ A  
Sbjct: 45  KRAHELIANAGLEQHLFLGNCLINMYV--RCGSLEEAHAIFSKMEERNVVSWTALISANA 102

Query: 110 EHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL---- 164
           +     R  +L+  M+   S  PN +T   +  AC+ +     G  +HA + + GL    
Sbjct: 103 QSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERES 162

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------- 211
                V ++ I MYA  G    A  +     + DV+ W A+   Y +             
Sbjct: 163 TTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFR 222

Query: 212 --------------------CGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFE 247
                               C  +     L     +   G    + NA+I+ + + G +E
Sbjct: 223 EMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWE 282

Query: 248 EARKLFNEMNDKDE---ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
            A  +F  M  + E   ++W+A+I    + G + +A+ +F  ++ + ++P    L  +L 
Sbjct: 283 GAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILN 342

Query: 305 ACASLGALDQGIW--IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-E 361
           A A+ G +D G     H  +  +    D V+G A++ MYAKCG    AW VF  ++ K +
Sbjct: 343 ALAASG-VDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCD 401

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID--RGLQA 419
           V +WN M+G           +  F  M    + P++++F  +L+AC+++  +D  R + +
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS 461

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV-WEALLGA 474
           L   ++   ++  V     +V + G+ G +AEAE V   MP+   + V W  +LGA
Sbjct: 462 LILTRRRDYVESSVATM--LVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 179/409 (43%), Gaps = 55/409 (13%)

Query: 116 RVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI 175
           R +   S  V VD   +   Y  + ++C  +    +G + H  +   GL   + + +  I
Sbjct: 8   RQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLI 67

Query: 176 QMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST---------- 225
            MY   G + +A  I     + +V+ W ALI    + G    A  LF++           
Sbjct: 68  NMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNS 127

Query: 226 --------------------------------KDKNTGSY--NAMISGFARFGRFEEARK 251
                                           ++  T +   NAMI+ +A+ G  E+A  
Sbjct: 128 YTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIA 187

Query: 252 LFNEMNDKDEITWSAIIDGYTKDG-YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           +F  + +KD ++W+A+   Y ++  +Y +AL +F EM    + P        L AC SL 
Sbjct: 188 VFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL- 246

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE---VFTWNA 367
               G W+H  +    +  D + G AL++MY KCG  + A+ VF+ M  ++   + +WNA
Sbjct: 247 --RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNA 304

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           MI      GR  DA+ +F +++ E MRP+ +T   +L+A A +G +D G  A  +  +++
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFG-AARKFHGRIW 362

Query: 428 --GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             G   +V     I+ +  + G+ + A  V   +  + +   W  +LGA
Sbjct: 363 ESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 24/260 (9%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KI 292
           N +I+ + R G  EEA  +F++M +++ ++W+A+I    + G +  A  +F  M  +   
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSA 123

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHV-----KRNSICVDAVLGTALVDMYAKCGRL 347
            P  + L  +L ACA+   L  G  IH  +     +R S     V G A+++MYAKCG  
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLV-GNAMINMYAKCGSP 182

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSA 406
           + A  VF  +  K+V +W AM G  A   R   DA+ +F +M  + + P+ ITF   L A
Sbjct: 183 EDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGA 242

Query: 407 CAHAGMIDRGLQALTYMQQM-----YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP- 460
           C         L+  T++  +      G DP   +   ++++ G+ G    A  V  +M  
Sbjct: 243 CT-------SLRDGTWLHSLLHEAGLGFDPLAGN--ALINMYGKCGDWEGAYGVFKAMAS 293

Query: 461 -MEPNAAVWEALLGACRKHG 479
             E +   W A++ A  + G
Sbjct: 294 RQELDLVSWNAMISASVEAG 313



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 169/417 (40%), Gaps = 65/417 (15%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV---HKPNVFVWNSVLRACL 109
           H+++ ++G   D      L+  +   +  ++E A  VF ++    + ++  WN+++ A +
Sbjct: 253 HSLLHEAGLGFDPLAGNALINMYG--KCGDWEGAYGVFKAMASRQELDLVSWNAMISASV 310

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD-KEGVQVHAHVVKNGLCGDV 168
           E       ++++  +     +PN  T  T+  A + +  D     + H  + ++G   DV
Sbjct: 311 EAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDV 370

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGS-KSDVICWNALIDG---------------YLKC 212
            V ++ I MYA  G  + A  +      K DVI WN ++                 ++  
Sbjct: 371 VVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLL 430

Query: 213 GDIEGAKELFKSTKDKNTGS-------------------------YNAMISGFARFGRFE 247
             I+  K  F +  +  + S                            ++S + + G   
Sbjct: 431 AGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIA 490

Query: 248 EARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
           EA  +F EM    +  +TW+ ++  Y ++   KEA     EM +  + P     + VL++
Sbjct: 491 EAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSS 550

Query: 306 CASLGALDQGIWIHDHVKRNSICV------DAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           C          +     +   +C+       A L TAL+ M+ +C  L+ A  VF++M  
Sbjct: 551 C----------YCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDH 600

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
            +V +W AM+   A +    +   LF +MQ E + PD+ T A  L  C  +  +  G
Sbjct: 601 GDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLG 657


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/588 (34%), Positives = 314/588 (53%), Gaps = 63/588 (10%)

Query: 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187
           +  P + T+  +  +C+   +   G+ VH  +V +G   D  + +  I MY   G +++A
Sbjct: 73  EPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRA 132

Query: 188 RQILDDGSKSDVICWNAL-------------IDGYLKCGDIEGAKELFKSTK-------- 226
            ++ D+  +  +  WNAL             +D Y++   I    + F  T         
Sbjct: 133 LKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVS 192

Query: 227 ----------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
                                 + N      ++  +A+FG    A  +F  M  K+ ++W
Sbjct: 193 ELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSW 252

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIK--PRKFVLSCVLAACASLGALDQGIWIHDHV 322
           SA+I  + K+    +ALE+F  M  +     P    +  +L ACA L AL+QG  IH ++
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYI 312

Query: 323 KRNSICVDAVLGT--ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            R  +  D++L    AL+ MY +CG + M  +VF++MK ++V +WN++I    MHG    
Sbjct: 313 LRRQL--DSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKK 370

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           AI++F  M  + + P  I+F  VL AC+HAG+++ G      M   Y I P +EHY C+V
Sbjct: 371 AIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMV 430

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGRA  L EA ++I  M  EP   VW +LLG+CR H  VE  ER   +L E+EP+N  
Sbjct: 431 DLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAG 490

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                       +   +   + KL++ RG++  PG S I+V   ++ F + D  +PQ++E
Sbjct: 491 NYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEE 550

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I+ +L K+  ++K +GY P ++ VL+D+DEEEKE     HSEKLA+AFG INT  G TIR
Sbjct: 551 IHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIR 610

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + KNLR+CEDCH+ TK ISK   R+I+VRD  R+HHFR+G CSC D+W
Sbjct: 611 IRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 175/388 (45%), Gaps = 52/388 (13%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H  ++ SG  QD +++  L+  +      + + ALKVF+   +  ++VWN++ RA    
Sbjct: 100 VHRCLVDSGFDQDPFLATKLINMYY--ELGSIDRALKVFDETRERTIYVWNALFRALAMV 157

Query: 112 NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD----KEGVQVHAHVVKNGLCGD 167
                ++ LY +M  + +  ++FTY  V KAC ++E      ++G ++HAH++++G   +
Sbjct: 158 GHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEAN 217

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
           +HV ++ + +YA FG V+ A  +       + + W+A+I  + K      A ELF     
Sbjct: 218 IHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMF 277

Query: 223 ------------------------------------KSTKDKNTGSYNAMISGFARFGRF 246
                                               +   D      NA+I+ + R G  
Sbjct: 278 EACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEV 337

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
              +++F+ M  +D ++W+++I  Y   G+ K+A+++F  M    + P       VL AC
Sbjct: 338 LMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGAC 397

Query: 307 ASLGALDQG-IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT- 364
           +  G +++G I     + +  I         +VD+  +  RL  A K+ EDM  +   T 
Sbjct: 398 SHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTV 457

Query: 365 WNAMIGGLAMHGR---ADDAIELFFKMQ 389
           W +++G   +H     A+ A  + F+++
Sbjct: 458 WGSLLGSCRIHCNVELAERASTVLFELE 485



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 160/377 (42%), Gaps = 57/377 (15%)

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----- 218
           LC   HV S   ++   F  +N +  +++D + ++    N LI    K G+++ A     
Sbjct: 19  LCYTSHVSS---RVPVSFVSLNPSANLINDINSNN----NQLIQSLCKGGNLKQALHLLC 71

Query: 219 ----------KELFKSTKDKNTGSY--------------------NAMISGFARFGRFEE 248
                     + L  S   KN+ SY                      +I+ +   G  + 
Sbjct: 72  CEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDR 131

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA- 307
           A K+F+E  ++    W+A+       G+ KE L+++ +M        +F  + VL AC  
Sbjct: 132 ALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVV 191

Query: 308 ---SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
              S+  L +G  IH H+ R+    +  + T L+D+YAK G +  A  VF  M  K   +
Sbjct: 192 SELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS 251

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMR--PDRITFACVLSACAHAGMIDRG--LQAL 420
           W+AMI   A +     A+ELF  M  E     P+ +T   +L ACA    +++G  +   
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGY 311

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE 480
              +Q+  I P +     ++ + GR G +   + V  +M  + +   W +L+     HG 
Sbjct: 312 ILRRQLDSILPVL---NALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLISIYGMHG- 366

Query: 481 VEFGERLGKILLEMEPQ 497
             FG++  +I   M  Q
Sbjct: 367 --FGKKAIQIFENMIHQ 381



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 130/269 (48%), Gaps = 18/269 (6%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ HA IL+ G+  + +V  TL+  +A  +F +   A  VF ++   N   W++++ AC 
Sbjct: 203 KEIHAHILRHGYEANIHVMTTLLDVYA--KFGSVSYANSVFCAMPTKNFVSWSAMI-ACF 259

Query: 110 EHNE-PWRVISLYSEMV--GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             NE P + + L+  M+    +S PN  T   + +AC+   A ++G  +H ++++  L  
Sbjct: 260 AKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDS 319

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
            + V ++ I MY   G V   +++ D+  K DV+ WN+LI  Y   G  + A ++F++  
Sbjct: 320 ILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMI 379

Query: 227 DKNTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEI-----TWSAIIDGYTKDGYY 277
            +       S+  ++   +  G  EE + LF  M  K  I      ++ ++D   +    
Sbjct: 380 HQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRL 439

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            EA+++  +M     +P   V   +L +C
Sbjct: 440 GEAIKLIEDMH---FEPGPTVWGSLLGSC 465


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/667 (32%), Positives = 350/667 (52%), Gaps = 69/667 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA-- 107
           KQ H  +++ G   +  +  ++V  +  SR +  ELA   F+S    N   WNS++ +  
Sbjct: 252 KQIHGYVIRFGRVSNTSICNSIVSMY--SRNNRLELARVAFDSTEDHNSASWNSIISSYA 309

Query: 108 ---CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK----------------------- 141
              CL  N  W    L  EM     KP+  T+ ++                         
Sbjct: 310 VNDCL--NGAW---DLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGF 364

Query: 142 ---ACSITEADKE---------GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
              +CSIT A +          G ++H +++++ L  DV+V +S +  Y    C++KA  
Sbjct: 365 KPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEV 424

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGR 245
           +       ++  WN+LI GY   G  + A++L    K++       ++N+++SG++  GR
Sbjct: 425 VFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGR 484

Query: 246 FEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301
            EEA  + N +       + ++W+A+I G  ++  Y +AL+ F++MQ + +KP    +  
Sbjct: 485 SEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICT 544

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           +L ACA    L  G  IH    R+    D  + TAL+DMY K G+L +A +VF ++K K 
Sbjct: 545 LLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKT 604

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           +  WN M+ G A++G  ++   LF +M++  +RPD ITF  +LS C ++G++  G +   
Sbjct: 605 LPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFD 664

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
            M+  Y I+P +EHY C+VDLLG+AG+L EA + I ++P + +A++W A+L ACR H ++
Sbjct: 665 SMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDI 724

Query: 482 EFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDV 527
           +  E   + LL +EP N               R  DV ++++ M   G+K     S I V
Sbjct: 725 KIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQV 784

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHS 587
              IH F T   SHP+  EIY  L ++I ++K  GY  + + V  +ID+ EKE     H+
Sbjct: 785 KQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHT 844

Query: 588 EKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGK 647
           EKLA+ +G + T  G+ IRV+KN R+C DCH+  K IS    R+I +RD  R+HHF NG+
Sbjct: 845 EKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGE 904

Query: 648 CSCNDFW 654
           CSC D W
Sbjct: 905 CSCKDRW 911



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 194/441 (43%), Gaps = 35/441 (7%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + HA ++K G   D ++S  L+  +   ++   + A +VF+       F+WN+++ A L 
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLY--EKYLGIDGANQVFDETPLQEDFLWNTIVMANLR 209

Query: 111 HNEPWR-VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +E W   + L+  M    +K    T   + +AC    A  EG Q+H +V++ G   +  
Sbjct: 210 -SEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTS 268

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           + +S + MY+    +  AR   D     +   WN++I  Y     + GA +L +  +   
Sbjct: 269 ICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSG 328

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
                                         D ITW++++ G+   G Y+  L  F  +Q 
Sbjct: 329 V---------------------------KPDIITWNSLLSGHLLQGSYENVLTNFRSLQS 361

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349
              KP    ++  L A   LG  + G  IH ++ R+ +  D  + T+LVD Y K   LD 
Sbjct: 362 AGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDK 421

Query: 350 AWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409
           A  VF   K K +  WN++I G    G  D+A +L  +M+ E ++PD +T+  ++S  + 
Sbjct: 422 AEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSM 481

Query: 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME---PNAA 466
           +G  +  L  +  ++ + G+ P V  +  ++    +     +A +  S M  E   PN+ 
Sbjct: 482 SGRSEEALAVINRIKSL-GLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNST 540

Query: 467 VWEALLGACRKHGEVEFGERL 487
               LL AC     ++ GE +
Sbjct: 541 TICTLLRACAGSSLLKIGEEI 561



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 4/257 (1%)

Query: 220 ELFKSTKDKNTGSYN-AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK-DGYY 277
           ++ K  K +N  + + +M+  + +FG FE A K+F     ++ + W++ I+ +    G  
Sbjct: 53  QIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDS 112

Query: 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
            E L VF E+    +K     L+ VL  C +L  L  G+ +H  + +    VD  L  AL
Sbjct: 113 HEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCAL 172

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           +++Y K   +D A +VF++  ++E F WN ++       + +DA+ELF +MQ    +   
Sbjct: 173 INLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATD 232

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            T   +L AC     ++ G Q   Y+ + +G          IV +  R   L  A     
Sbjct: 233 GTIVKLLQACGKLRALNEGKQIHGYVIR-FGRVSNTSICNSIVSMYSRNNRLELARVAFD 291

Query: 458 SMPMEPNAAVWEALLGA 474
           S   + N+A W +++ +
Sbjct: 292 STE-DHNSASWNSIISS 307


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/721 (31%), Positives = 360/721 (49%), Gaps = 118/721 (16%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR--- 106
           K+ H  I+K+    + ++   LV  +A  +F     A +VF+ + + N++ WN++L    
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYA--KFDRITYARRVFDQMPQRNLYSWNTLLSSYS 86

Query: 107 --ACLE------HNEPWRVISLYSEMVGVDS---------------------KPNKFTYP 137
             ACL       H  P R +  ++ ++   +                       N+    
Sbjct: 87  KLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALS 146

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD----- 192
           T+    S       G+QVH HVVK G    V V S  + MY+  G V  ARQ  D     
Sbjct: 147 TMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEK 206

Query: 193 --------------------------DGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
                                     D  + D I W A+I G+ + G    A +LF+  +
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 227 DKNT-------GSY--------------------------------NAMISGFARFGRFE 247
            +N        GS                                 +A++  + +    +
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIK 326

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
            A  +F +MN K+ ++W+A++ GY ++GY +EA+++F +MQ + I+P  F L  V+++CA
Sbjct: 327 SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCA 386

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L +L++G   H     + +     +  ALV +Y KCG ++ + ++F +M   +  +W A
Sbjct: 387 NLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTA 446

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           ++ G A  G+A++ + LF  M     +PD++TF  VLSAC+ AG++ +G Q    M + +
Sbjct: 447 LVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEH 506

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            I P  +HY C++DL  RAG L EA + I+ MP  P+A  W +LL +CR H  +E G+  
Sbjct: 507 RIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWA 566

Query: 488 GKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHE 533
            + LL++EP N               + ++VA +RK M+++G++  PG S I     +H 
Sbjct: 567 AESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHI 626

Query: 534 FRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIA 593
           F   D S+P   +IY  L+K+  K+  EGY P+ + VL D+D+ EK     +HSEKLAIA
Sbjct: 627 FSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIA 686

Query: 594 FGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
           FG I   PG  IRV+KNLRVC DCH+ATK ISK+ +R+I+VRD  R+H F++G+CSC DF
Sbjct: 687 FGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDF 746

Query: 654 W 654
           W
Sbjct: 747 W 747



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 168/366 (45%), Gaps = 14/366 (3%)

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
           C + +  ++  ++H H++K     ++ + ++ +  YA F  +  AR++ D   + ++  W
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-----N 257
           N L+  Y K   +   + +F +   ++  S+N++IS +A  G   ++ K +N M      
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           + + I  S ++   +K G     L+V   + +   +   FV S ++   +  G +     
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
             D +   ++    V+   L+    +C R++ + ++F DM+ K+  +W AMI G   +G 
Sbjct: 199 AFDEMPEKNV----VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
             +AI+LF +M+ E +  D+ TF  VL+AC     +  G Q   Y+ +    D  +    
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQD-NIFVGS 313

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            +VD+  +   +  AE V   M  + N   W A+L     +G+  + E   KI  +M+  
Sbjct: 314 ALVDMYCKCKSIKSAETVFRKMNCK-NVVSWTAMLVG---YGQNGYSEEAVKIFCDMQNN 369

Query: 498 NRRCDD 503
               DD
Sbjct: 370 GIEPDD 375


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/671 (32%), Positives = 352/671 (52%), Gaps = 76/671 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA ++K+G  ++ +V   LV  +A  +      A KVF+++ + NV VW +++   ++++
Sbjct: 3   HAHVIKTGTHEEFFVMSFLVNVYA--KCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
           +P   + ++ +M+   S P+ FT      ACS  E+   G Q HA ++K  +  D  + +
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA--------KELFK- 223
           +   +Y+ FG ++ + +   +  + DVI W  +I     CGD   A        + LF+ 
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISA---CGDNGRAGMGLRLFIEMLFEN 177

Query: 224 ------------------------------STK---DKNTGSYNAMISGFARFGRFEEAR 250
                                         STK   + N    N+++  + + G  +EA+
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237

Query: 251 KLFNEMNDKDEITWSAIIDGYT------KDGYY-----KEALEVFNEMQRDKIKPRKFVL 299
            LFN M  K+ ITW+A+I G+       KD +       EAL ++ ++ R   KP  F L
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           S +L  C+ L AL+QG  IH    ++    D V+GTALVDMY KCG ++ A K F DM  
Sbjct: 298 SSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMST 357

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           + + +W +MI   A HG++  A++LF  M+    RP++ITF  VL+AC+HAGM+D  L+ 
Sbjct: 358 RTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEY 417

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
              MQ+ Y I P ++HYGC+VD+  R G L EA +VI  M +EPN  +W  L+  CR HG
Sbjct: 418 FEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHG 477

Query: 480 EVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMI 525
             E G    + LL+++P++               R +DV+ +R+LMKE  +      S I
Sbjct: 478 NEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRI 537

Query: 526 DVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFD----IDEEEKET 581
            + G +H F+T +  H    E++ +L  ++++ K  GY    +  + D      EE+  +
Sbjct: 538 SIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFS 597

Query: 582 APKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYH 641
           +  YHSEKLA+ FG +NT  GA IRVIK++ +C+DCH   K++S    R II++D  R H
Sbjct: 598 SAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLH 657

Query: 642 HFRNGKCSCND 652
            F NG+CSC D
Sbjct: 658 KFVNGQCSCAD 668



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 176/389 (45%), Gaps = 64/389 (16%)

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           VHAHV+K G   +  V S  + +YA  G +  AR++ D+  + +V+ W  L+ GY++   
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 215 IEGAKELF-----------------------------------------KSTKDKNTGSY 233
            E A E+F                                         + + D + G  
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIG-- 119

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NA+ S +++FG  + + K F E  +KD I+W+ II     +G     L +F EM  + ++
Sbjct: 120 NALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVE 179

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F L+ VL+ C+++ + D G+ +H    +     +  +  +LV +Y KCG +D A  +
Sbjct: 180 PNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNL 239

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADD--------------AIELFFKMQREKMRPDRIT 399
           F  M+ K + TWNAMI G   H +A D              A+ ++ K+ R   +PD  T
Sbjct: 240 FNRMEYKNLITWNAMIAG---HAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFT 296

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
            + +L+ C+    +++G Q   + Q +  G   +V     +VD+  + G +  A +    
Sbjct: 297 LSSILTVCSRLAALEQGEQ--IHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLD 354

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERL 487
           M      + W +++ +  +HG+ +   +L
Sbjct: 355 MSTRTLIS-WTSMITSFARHGQSQHALQL 382



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 196/441 (44%), Gaps = 67/441 (15%)

Query: 15  KPE---EISATNIPTSEFSQKTILDILNTKCHT--SWQHLKQAHAVILKSGHFQDHYVSG 69
           +PE   E+    + +  F     L I    C +  S    KQ HA I+K     D  +  
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 70  TLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129
            L  C   S+F + + ++K F    + +V  W +++ AC ++      + L+ EM+  + 
Sbjct: 121 AL--CSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENV 178

Query: 130 KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQ 189
           +PN FT  +V   CS  ++   G+QVH+   K G   ++ + +S + +Y   GC+++A+ 
Sbjct: 179 EPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKN 238

Query: 190 ILDDGSKSDVICWNALIDGYLKCGDIEGAKELF--KSTKDKNTGSY-------------- 233
           + +     ++I WNA+I G+ +  D+  AK+ F  + T  +  G Y              
Sbjct: 239 LFNRMEYKNLITWNAMIAGHAQAMDL--AKDNFSAQQTGTEALGMYLKLNRSGRKPDLFT 296

Query: 234 ------------------------------------NAMISGFARFGRFEEARKLFNEMN 257
                                                A++  + + G  E ARK F +M+
Sbjct: 297 LSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMS 356

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
            +  I+W+++I  + + G  + AL++F +M+    +P +     VLAAC+  G +D+ + 
Sbjct: 357 TRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALE 416

Query: 318 IHDHVKRNSICVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM 374
             + + +    +  V+     LVDM+ + GRLD A+ V + M ++   F W  +I G   
Sbjct: 417 YFE-IMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRN 475

Query: 375 HGRADDAIELFFKMQREKMRP 395
           HG  ++ +  +   Q  K++P
Sbjct: 476 HG--NEELGFYAAEQLLKLKP 494



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 15/239 (6%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H HV +     +  + + LV++YAKCG +  A KVF+++  + V  W  ++ G   + +
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
            + A+E+F  M      P   T +  L+AC+    I  G Q   ++ + Y I  +     
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIK-YRISHDSSIGN 120

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
            +  L  + G L  + +       E +   W  ++ AC  +G    G RL    +EM  +
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETG-EKDVISWTTIISACGDNGRAGMGLRL---FIEMLFE 176

Query: 498 NRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK----EIYLMLK 552
           N   +D      L     I+++      D+   +H   T  G    ++     +YL LK
Sbjct: 177 NVEPNDFTLTSVLSLCSTIQSS------DLGMQVHSLSTKLGHESNLRITNSLVYLYLK 229


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/655 (31%), Positives = 343/655 (52%), Gaps = 62/655 (9%)

Query: 62  FQDHYVSGTLVKCHANSRFSN---FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
            +  + S TL+     S +      + A  +   +++ +V  WN+++ AC ++ + W  I
Sbjct: 287 LESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAI 346

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQM 177
            L   M       NK TY +V +AC+  EA  +G ++HA V+  GL   +V V +S I M
Sbjct: 347 HLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITM 406

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----------- 226
           Y   G    A  + +   + D + WNA+I+  +     + A ELF   +           
Sbjct: 407 YGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTL 466

Query: 227 -----------------------------DKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
                                          +T   N++++ +AR G   +A+K F+ + 
Sbjct: 467 LSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLE 526

Query: 258 DKDEITWSAIIDGY--TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           +K  + WS I+  Y  +KDG  + A + F EM+ + IKP +      L ACA++  L+ G
Sbjct: 527 EKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHG 586

Query: 316 IWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
             +H     +       VLG  +++MY KCG    A  VF+ M  K + +WN++I   A 
Sbjct: 587 RSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAH 646

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           +G A +A+    +M  +   PD  T   +L   +HAG+++RG++      Q +G++P   
Sbjct: 647 NGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSG 706

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
              C+VDLL R G+L  AEE+I + P  + +   W  LL AC+ +G+ + G R  + + E
Sbjct: 707 QLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFE 766

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EPQ+               R  D +++RK+M+   +K  PG S I+++G +HEF +G+ 
Sbjct: 767 LEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGES 826

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            HP+++EI   L+K+  +++  GY P+++ V+ D++E +KE     HSE+LAI FG ++T
Sbjct: 827 KHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMST 886

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG TIRV+KNLRVC DCH+ATK+IS V  R+I+VRD  R+HHF++G+CSC DFW
Sbjct: 887 RPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 194/428 (45%), Gaps = 40/428 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           AL VF+ +   NVF W  ++ A  ++      + L++ M    ++P+K  +     AC+ 
Sbjct: 11  ALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAA 70

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
           +     G Q+H+ VV +GL  ++ + +S + MY     V  A ++ D     DV+ W A+
Sbjct: 71  SGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAM 130

Query: 206 IDGYLKCG------------DIEGAKE---LFKSTKDK------------------NTGS 232
           +  Y + G            D EG K     F +  D                   N G 
Sbjct: 131 LAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGL 190

Query: 233 Y------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                  NA++  +   G F++ + +F+ M     + W+ +I G +++G Y+E L VF +
Sbjct: 191 EPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRK 250

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M  + +K  +     ++  C +L A+ +G  I   +  +  C   +L T+L+ +Y +CG 
Sbjct: 251 MDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGI 310

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           LD A  + E M  ++V  WNAM+   A +G   +AI L  +M  E    +++T+  VL A
Sbjct: 311 LDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEA 370

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           CA+   + +G +    +     +  EV     ++ + G+ G    A  V  +MP + + +
Sbjct: 371 CANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVS 430

Query: 467 VWEALLGA 474
            W A++ A
Sbjct: 431 -WNAVINA 437



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 143/601 (23%), Positives = 245/601 (40%), Gaps = 90/601 (14%)

Query: 32  KTILDILNTKCHTSWQ--HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           K +  I    C  S +  H +Q H+ ++ SG   +  +S +LV  +   +  +   A KV
Sbjct: 58  KVVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQ--DVPCAEKV 115

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPW-RVISLYSEMVGVDSKPNKFTYPTVFKACSITEA 148
           F+ +   +V  W ++L A    N  W + +   S M     KPN+ T+ T+   C+    
Sbjct: 116 FDGMLLRDVVSWTAML-AVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRL 174

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
              G ++H  ++  GL  D  + ++ + MY   G  +  + +     +S V+ W  +I G
Sbjct: 175 LDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAG 234

Query: 209 YLKCG------------DIEGAK---------------------------ELFKSTKDKN 229
             + G            D+EG K                            + +S    +
Sbjct: 235 CSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSS 294

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
           T    ++IS + + G  + A+ L   M  +D + W+A++    ++G   EA+ +   M  
Sbjct: 295 TLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDM 354

Query: 290 DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLD 348
           +     K     VL ACA+L AL QG  IH  V    +    V +G +++ MY KCG+ +
Sbjct: 355 EGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTE 414

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A  VFE M  K+  +WNA+I     + +  DA+ELF  M+ E +R +  T   +L AC 
Sbjct: 415 AAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACG 474

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHY-------GCIVDLLGRAGYLAEAEEVISSMPM 461
                  GL+ L   +Q++                  +V++  R G L +A++   S+  
Sbjct: 475 -------GLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLE- 526

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPG 521
           E     W  +L A  +  +   G R  K   EME +                 GIK  PG
Sbjct: 527 EKGLVAWSIILAAYAQSKDGP-GRRAFKFFQEMEAE-----------------GIK--PG 566

Query: 522 S----SMIDVNGVIHEFRTGDGSHPQVK-----EIYLMLKKIIEKLKMEGYSPNSSQVLF 572
                S +D    +     G   H +       E  L+L   I  +  +  SP+ ++++F
Sbjct: 567 EVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVF 626

Query: 573 D 573
           D
Sbjct: 627 D 627



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 151/287 (52%), Gaps = 5/287 (1%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + +  R  +A  +F+ ++ K+  +W+ ++  Y+++G+Y+EALE+F  MQ +  +P K V 
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L ACA+ G LD G  IH  V  + +  + ++  +LV+MY KC  +  A KVF+ M +
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           ++V +W AM+   A +G    A+E   +M  E ++P+++TF  ++  CA   ++D G + 
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG-RK 180

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
           + +     G++P+      +V + G  G   + + V S M  + +  +W  ++  C ++G
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQNG 239

Query: 480 EVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGSSMID 526
           + E G     +  +M+ +  + ++V  M  +   R +       MID
Sbjct: 240 QYEEGLL---VFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMID 283



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KC R+  A  VF+ +  K VF+W  M+   + +G   +A+ELF +MQ E  RPD++ 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
           F   L ACA +G +D G Q  + +    G+   +     +V++ G+   +  AE+V   M
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVG-SGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 460 PMEPNAAVWEALLGACRKHG 479
            +  +   W A+L    ++G
Sbjct: 120 LLR-DVVSWTAMLAVYAQNG 138


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/662 (30%), Positives = 344/662 (51%), Gaps = 57/662 (8%)

Query: 47  QHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           + L QAHA I+K GH  +H V  TL+  +  +     + A ++F  +   +   +N ++ 
Sbjct: 157 KELYQAHAQIVKLGHHLNHRVCNTLLDSYFKT--GGLDSARRLFLEMCGWDSVSFNVMIT 214

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
               +      I L+ EM  +  KP+ FT+  V  A    +    G Q+H  VVK     
Sbjct: 215 GYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIR 274

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--- 223
           +V V ++ +  Y+   CVN+ R++ ++  + D + +N +I  Y   G ++ + +LF+   
Sbjct: 275 NVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQ 334

Query: 224 ------------------------------------STKDKNTGSYNAMISGFARFGRFE 247
                                               S  D +    N+++  +A+ G+FE
Sbjct: 335 FTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFE 394

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
           EA ++F  ++ +  + W+A+I    + G ++  L++F EM+R  +   +   +CVL A A
Sbjct: 395 EADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASA 454

Query: 308 SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
           +L ++  G  +H  V R+   ++   G AL+DMYA C  +  A K FE+M  + V TWNA
Sbjct: 455 NLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNA 513

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
           ++   A +G     ++ F +M     +PD ++F C+L+AC+H  +++ GL+    M  +Y
Sbjct: 514 LLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVY 573

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
            + P+ EHY  +VD L R+G   EAE+++  MP EP+  VW ++L +CR H       + 
Sbjct: 574 NLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKA 633

Query: 488 G------KILLEMEP---------QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIH 532
                  K+L +  P         +  + D V K++K M++RG++  P  S +++   +H
Sbjct: 634 AGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVH 693

Query: 533 EFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAI 592
            F   D  HPQ  EI   ++ + E+++ EGY P+ S    ++D+E K  + KYHSE+LAI
Sbjct: 694 VFSANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAI 753

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
           AF  INT  G+ I V+KNLR C DCH+A K+ISK+  R+I VRD  R+HHFR+G CSC D
Sbjct: 754 AFALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGD 813

Query: 653 FW 654
           +W
Sbjct: 814 YW 815



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 159/371 (42%), Gaps = 52/371 (14%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK----------------------- 211
           I  Y   G +  AR+I DD  +  V+ W  +I  Y K                       
Sbjct: 81  ISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDY 140

Query: 212 ---------CGDIEGAKELFKSTKD-------KNTGSYNAMISGFARFGRFEEARKLFNE 255
                    C D+E AKEL+++           N    N ++  + + G  + AR+LF E
Sbjct: 141 VTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLE 200

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M   D ++++ +I GY  +G  +EA+E+F EMQ    KP  F  + V++A   L     G
Sbjct: 201 MCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFG 260

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             IH  V + S   +  +G A +D Y+K   ++   K+F +M   +  ++N +I   A  
Sbjct: 261 QQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWV 320

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI-DPEVE 434
           G+  ++I+LF ++Q          F  +LS  A +  +  G Q   + Q +  + DP+  
Sbjct: 321 GKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQ--LHAQVVVSMADPDFR 378

Query: 435 HYGCIVDLLGRAGYLAEAEEV---ISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491
               +VD+  + G   EA+ +   +SS    P    W A++ A  + G  E G    K+ 
Sbjct: 379 VSNSLVDMYAKCGKFEEADRIFLRLSSRSTVP----WTAMISANVQRGLHENGL---KLF 431

Query: 492 LEMEPQNRRCD 502
            EM   N   D
Sbjct: 432 YEMRRANVSAD 442



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
           +N +I    + G +  A++L     ++N+ S + +ISG+ + G    AR++F++ +++  
Sbjct: 46  FNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTV 105

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH 321
           + W+ +I  Y+K   + +A ++F EM R   +P       +L  C  L    +    H  
Sbjct: 106 VAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQ 165

Query: 322 VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDA 381
           + +    ++  +   L+D Y K G LD A ++F +M   +  ++N MI G A +G  ++A
Sbjct: 166 IVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEA 225

Query: 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           IELF +MQ    +P   TFA V+SA         GL    + QQ++G 
Sbjct: 226 IELFVEMQNLGFKPSDFTFAAVISASV-------GLDDTAFGQQIHGF 266



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 165/417 (39%), Gaps = 80/417 (19%)

Query: 17  EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA 76
           +E+  T      F   T+L I  +      Q  +Q HA ++ S    D  VS +LV  +A
Sbjct: 331 QELQFTTFDRKNFPFPTMLSIAASSL--DLQMGRQLHAQVVVSMADPDFRVSNSLVDMYA 388

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136
             +   FE A ++F  +   +   W +++ A ++       + L+ EM   +   ++ T+
Sbjct: 389 --KCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATF 446

Query: 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196
             V KA +   +   G Q+H+ V+++G           + +Y+  GC             
Sbjct: 447 ACVLKASANLASILLGKQLHSCVIRSGF----------MNVYS--GC------------- 481

Query: 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
                  AL+D Y  C  I+ A + F+   ++N  ++NA++S +A+ G  +   K F EM
Sbjct: 482 -------ALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEM 534

Query: 257 NDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
                     I+ GY                     +P      C+L AC+    +++G+
Sbjct: 535 ----------IMSGY---------------------QPDSVSFLCILTACSHCRLVEEGL 563

Query: 317 -WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM 374
            + +D     ++       TA+VD   + GR D A K+   M  + +   W +++    +
Sbjct: 564 KYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRI 623

Query: 375 H---GRADDAIELFFKMQREKMRPDRITFACVLSACAH--------AGMIDRGLQAL 420
           H     A  A    F M+  +     +T + + +              M DRG++ L
Sbjct: 624 HKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKL 680


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/620 (32%), Positives = 337/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +++S    D YV+  L++ +A  +  +F+ A +VFNS+   N   W  ++   L
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 347

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+++M       ++F   T+   C        G Q+H+  +K+G     H
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-----H 402

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                          N+A           ++  N+LI  Y KCGD++ A+ +F S  +++
Sbjct: 403 ---------------NRA-----------IVVSNSLISLYAKCGDLQNAEFVFSSMSERD 436

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+ +++ G   +AR+ F+ M  ++ ITW+A++  Y + G  ++ L++++ M  
Sbjct: 437 IVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            K + P       +   CA +GA   G  I  H  +  + ++  +  A + MY+KCGR+ 
Sbjct: 497 QKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS 556

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A K+F+ +  K+V +WNAMI G + HG    A + F  M  +  +PD I++  VLS C+
Sbjct: 557 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 616

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M +++GI P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 617 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 676

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 677 GALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 736

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++V   +H F+  D SHPQV  I   + +++EK+   GY           
Sbjct: 737 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV---------- 786

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
              E   +  +HSEKLA+AFG ++      I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 787 -RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 845

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF++G CSC D+W
Sbjct: 846 RDGVRFHHFKSGSCSCGDYW 865



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 150/319 (47%), Gaps = 37/319 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  YL CG +  A+ L ++  K+ N  ++N M++G+A+ G   +A +L
Sbjct: 34  GLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEEL 93

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGA 311
           F+ M  +D  +W+ ++ GY +   + + LE F  M R     P  F   CV+ +C +LG 
Sbjct: 94  FDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGC 153

Query: 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV------------------ 353
            +    +     +     D  + TALVDM+ +CG +D A ++                  
Sbjct: 154 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 213

Query: 354 -------------FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                        FEDM  ++V +WN MI  L+  GR  +A+ L  +M R+ +R D  T+
Sbjct: 214 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 273

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +++L  + G   EA+ V +S+
Sbjct: 274 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSL 331

Query: 460 PMEPNAAVWEALLGACRKH 478
             + N+  W  L+G   ++
Sbjct: 332 Q-DRNSVSWTVLIGGSLQY 349



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 187/439 (42%), Gaps = 63/439 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACS 144
           A ++F+ + + +V  WN+++    +       +  +  M    DS PN FT+  V K+C 
Sbjct: 90  AEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCG 149

Query: 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
                +   Q+     K    GD  V++                               A
Sbjct: 150 ALGCRELAPQLLGLFWKFDFWGDPDVET-------------------------------A 178

Query: 205 LIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264
           L+D +++CG ++ A  LF   +       N+M++G+A+    + A + F +M ++D ++W
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324
           + +I   ++ G  +EAL +  EM R  ++      +  L ACA L +L  G  +H  V R
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIEL 384
           +   +D  + +AL+++YAKCG    A +VF  ++ +   +W  +IGG   +     ++EL
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444
           F +M+ E M  D+   A ++S C +   +  G Q L  +    G +  +     ++ L  
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYA 417

Query: 445 RAGYLAEAEEVISSMP------------------------------MEPNAAVWEALLGA 474
           + G L  AE V SSM                                  NA  W A+LGA
Sbjct: 418 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGA 477

Query: 475 CRKHGEVEFGERLGKILLE 493
             +HG  E G ++   +L 
Sbjct: 478 YIQHGAEEDGLKMYSAMLS 496



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-DM 357
           L+  L +C S GAL     +H  +    +     L   L+  Y  CG L  A ++   D+
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR----------------------- 394
           K   V T N M+ G A  G   DA ELF +M R  +                        
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 395 ---------PDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVEHYGCIVDLLG 444
                    P+  TF CV+ +C   G  +   Q L    +  +  DP+VE    +VD+  
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVET--ALVDMFV 184

Query: 445 RAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG---EVEFGERLGK-------ILLEM 494
           R GY+  A  + S +           L G  + +G    +E+ E + +       +++  
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
             Q+ R  +   +   M  +G++ +  +    +      F  G G     K I
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI 297


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/569 (36%), Positives = 323/569 (56%), Gaps = 60/569 (10%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           KC  +   +KQ HA I++    +D +++  L+   +  R +N  LA++VFN V +PNV +
Sbjct: 28  KC-ANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTN--LAVRVFNQVQEPNVHL 84

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
            NS++RA  ++++P++   ++SEM       + FTYP + KACS          +H H+ 
Sbjct: 85  CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE 144

Query: 161 KNGLCGDVHVKSSGIQMYA-CFGC--------------------------------VNKA 187
           K GL  D++V ++ I  Y+ C G                                 +  A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204

Query: 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFE 247
           R++ D+  + D+I WN ++DGY +C ++  A ELF+   ++NT S++ M+ G+++ G  E
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDME 264

Query: 248 EARKLFNEMN--DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            AR +F++M    K+ +TW+ II GY + G  KEA  + ++M    +K     +  +LAA
Sbjct: 265 MARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAA 324

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C   G L  G+ IH  +KR+++  +A +  AL+DMYAKCG L  A+ VF D+  K++ +W
Sbjct: 325 CTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSW 384

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           N M+ GL +HG   +AIELF +M+RE +RPD++TF  VL +C HAG+ID G+     M++
Sbjct: 385 NTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEK 444

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +Y + P+VEHYGC+VDLLGR G L EA +V+ +MPMEPN  +W ALLGACR H EV+  +
Sbjct: 445 VYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAK 504

Query: 486 RLGKILLEMEPQNRRCDD------------------VAKMRKLMKERGIKTNPGSSMIDV 527
            +   L++++P    CD                   VA +R  MK  G++   G+S +++
Sbjct: 505 EVLDNLVKLDP----CDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVEL 560

Query: 528 NGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              IHEF   D SHP+  +IY ML  +IE
Sbjct: 561 EDGIHEFTVFDKSHPKSDQIYQMLGSLIE 589



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L  CA+L  + Q   +H  + R ++  D  +   L+   + C + ++A +VF  ++   V
Sbjct: 26  LPKCANLNQVKQ---LHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
              N++I   A + +   A  +F +MQR  +  D  T+  +L AC+    +        +
Sbjct: 83  HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLA--EAEEVISSMPMEPNAAVWEALLGACRKHGE 480
           ++++ G+  ++     ++D   R G L   +A ++   M  E +   W ++LG   K GE
Sbjct: 143 IEKL-GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGGLVKAGE 200

Query: 481 VEFGERL 487
           +    RL
Sbjct: 201 LRDARRL 207


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/649 (34%), Positives = 356/649 (54%), Gaps = 54/649 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH- 111
           HA +LK GH  DH++   ++  +A +     +LA  +F  + +  +  WNS++  C +  
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKN--GQVDLARNLFEQMAERTLADWNSMISGCWKSG 175

Query: 112 NE----------PWRVISLYSEMVG--------------VDSKPNK--FTYPTVFKACSI 145
           NE          P R I  ++ MV                D  P +   ++  +  A + 
Sbjct: 176 NETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQ 235

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI----C 201
            E  KE + +   +++ G+  D       I   +  G    A  IL    +  ++     
Sbjct: 236 KECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFV 295

Query: 202 WNALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             AL+D + K G++E A+ +F      +N  ++N MIS + R G+   AR+LF+ M  +D
Sbjct: 296 KTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRD 355

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIH 319
            ++W+++I GY ++G    ++E+F EM     I+P +  ++ VL+AC  +GAL    W+ 
Sbjct: 356 VVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVL 415

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           D V+  +I +      +L+ MY+KCG +  A ++F+ M  ++V ++N +I G A +G   
Sbjct: 416 DIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGK 475

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +AI+L   M+ E + PD +T+  VL+AC+HAG+++ G      +Q      P V+HY C+
Sbjct: 476 EAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACM 530

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           VDLLGRAG L EA+ +I SMPM+P+A V+ +LL A R H  V  GE     L E+EPQN 
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL 590

Query: 500 --------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         R +DV ++R++MK+ G+K + G S ++  G +H+F  GD SH Q K
Sbjct: 591 GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSK 650

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           +IY +L ++  K+K  G+  + S  L D++EEEKE     HSEKLAI F  + ++ G TI
Sbjct: 651 DIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTI 710

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RV+KNLR+C DCH+A K+ISK+  R+I+VRD  R+H F  G CSC+D+W
Sbjct: 711 RVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 239/496 (48%), Gaps = 52/496 (10%)

Query: 47  QHLKQAHA-VILKSGHFQDHYVSGTLVKC---HANSRFSNFELALKVFNSVHKPNVFVWN 102
           + L+Q H  ++  S H  +++VS  L+ C   HA+  + +      +F S   P+  V++
Sbjct: 15  RQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVD-----SIFTSSPSPDASVYS 69

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
            +L+         +V+SL+     ++ +P  F Y  + K      A K G   HA+V+K 
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AGKSGNLFHAYVLKL 124

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G   D  ++++ + MYA  G V+ AR + +  ++  +  WN++I G  K G+   A  LF
Sbjct: 125 GHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLF 184

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                +N  ++ +M++G+A+ G  E AR+ F+EM ++  ++W+A+   Y +    KEAL 
Sbjct: 185 NMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F++M  + I P        +++C+S+G       I   + +  I +++ + TAL+DM+A
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 343 KCGRLDMA---------------WKV-----------------FEDMKMKEVFTWNAMIG 370
           K G L++A               W +                 F++M  ++V +WN+MI 
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 371 GLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           G A +G +  +IELF +M     ++PD +T A VLSAC H G +      L  +++   I
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NI 423

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
              +  +  ++ +  + G +A+A  +  +M    +   +  L+     +G    G+   K
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGH---GKEAIK 479

Query: 490 ILLEMEPQNRRCDDVA 505
           ++L ME +    D V 
Sbjct: 480 LVLTMEEEGIEPDHVT 495


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/620 (32%), Positives = 337/620 (54%), Gaps = 59/620 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +++S    D YV+  L++ +A  +  +F+ A +VFNS+   N   W  ++   L
Sbjct: 280 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 337

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++    + + L+++M       ++F   T+   C        G Q+H+  +K+G     H
Sbjct: 338 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSG-----H 392

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
                          N+A           ++  N+LI  Y KCGD++ A+ +F S  +++
Sbjct: 393 ---------------NRA-----------IVVSNSLISLYAKCGDLQNAEFVFSSMSERD 426

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289
             S+ +MI+ +++ G   +AR+ F+ M  ++ ITW+A++  Y + G  ++ L++++ M  
Sbjct: 427 IVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLS 486

Query: 290 DK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            K + P       +   CA +GA   G  I  H  +  + ++  +  A + MY+KCGR+ 
Sbjct: 487 QKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS 546

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
            A K+F+ +  K+V +WNAMI G + HG    A + F  M  +  +PD I++  VLS C+
Sbjct: 547 EAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS 606

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           H+G++  G      M +++GI P +EH+ C+VDLLGRAG+L EA+++I  MPM+P A VW
Sbjct: 607 HSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVW 666

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKER 514
            ALL AC+ HG  E  E   K + E++  +               + DD A++RKLM+++
Sbjct: 667 GALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 726

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
           GIK NPG S ++V   +H F+  D SHPQV  I   + +++EK+   GY           
Sbjct: 727 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV---------- 776

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
              E   +  +HSEKLA+AFG ++      I ++KNLR+C DCH+  KLIS V  R+ ++
Sbjct: 777 -RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 835

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD VR+HHF++G CSC D+W
Sbjct: 836 RDGVRFHHFKSGSCSCGDYW 855



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 39/368 (10%)

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW------NALIDGYLKCGDI 215
           N L  D    +         GC   A Q+L    K D   W       AL+D +++CG +
Sbjct: 122 NTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDF--WGDPDVETALVDMFVRCGYV 179

Query: 216 EGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDG 275
           + A  LF   +       N+M++G+A+    + A + F +M ++D ++W+ +I   ++ G
Sbjct: 180 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 239

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335
             +EAL +  EM R  ++      +  L ACA L +L  G  +H  V R+   +D  + +
Sbjct: 240 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 299

Query: 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395
           AL+++YAKCG    A +VF  ++ +   +W  +IGG   +     ++ELF +M+ E M  
Sbjct: 300 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 359

Query: 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEV 455
           D+   A ++S C +   +  G Q L  +    G +  +     ++ L  + G L  AE V
Sbjct: 360 DQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 418

Query: 456 ISSMP------------------------------MEPNAAVWEALLGACRKHGEVEFGE 485
            SSM                                  NA  W A+LGA  +HG  E G 
Sbjct: 419 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 478

Query: 486 RLGKILLE 493
           ++   +L 
Sbjct: 479 KMYSAMLS 486



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 63/319 (19%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKL 252
           G  S V   N L+  YL CG +  A+ L ++  K+ N  ++N M++G+A+ G   +A +L
Sbjct: 50  GLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEEL 109

Query: 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
           F+ M  +D  +W                    N +  D  +P    +SC    C  L   
Sbjct: 110 FDRMPRRDVASW--------------------NTLMSDTSRPAGSWMSCGALGCRELAPQ 149

Query: 313 DQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV------------------ 353
             G+ W  D         D  + TALVDM+ +CG +D A ++                  
Sbjct: 150 LLGLFWKFDFWG------DPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 203

Query: 354 -------------FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
                        FEDM  ++V +WN MI  L+  GR  +A+ L  +M R+ +R D  T+
Sbjct: 204 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 263

Query: 401 ACVLSACAHAGMIDRGLQA-LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459
              L+ACA    +  G Q     ++ +  IDP V     +++L  + G   EA+ V +S+
Sbjct: 264 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSL 321

Query: 460 PMEPNAAVWEALLGACRKH 478
             + N+  W  L+G   ++
Sbjct: 322 -QDRNSVSWTVLIGGSLQY 339



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 103/271 (38%), Gaps = 28/271 (10%)

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE-DM 357
           L+  L +C S GAL     +H  +    +     L   L+  Y  CG L  A ++   D+
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 358 KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-----------RPDRITFACVLSA 406
           K   V T N M+ G A  G   DA ELF +M R  +           RP     +C    
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALG 142

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C     +   L  L +    +G DP+VE    +VD+  R GY+  A  + S +       
Sbjct: 143 CRE---LAPQLLGLFWKFDFWG-DPDVET--ALVDMFVRCGYVDFASRLFSQIERPTIFC 196

Query: 467 VWEALLGACRKHG---EVEFGERLGK-------ILLEMEPQNRRCDDVAKMRKLMKERGI 516
               L G  + +G    +E+ E + +       +++    Q+ R  +   +   M  +G+
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256

Query: 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEI 547
           + +  +    +      F  G G     K I
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVI 287


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/649 (34%), Positives = 356/649 (54%), Gaps = 54/649 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH- 111
           HA +LK GH  DH++   ++  +A +     +LA  +F  + +  +  WNS++  C +  
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKN--GQVDLARNLFEQMAERTLADWNSMISGCWKSG 175

Query: 112 NE----------PWRVISLYSEMVG--------------VDSKPNK--FTYPTVFKACSI 145
           NE          P R I  ++ MV                D  P +   ++  +  A + 
Sbjct: 176 NETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQ 235

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI----C 201
            E  KE + +   +++ G+  D       I   +  G    A  IL    +  ++     
Sbjct: 236 KECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFV 295

Query: 202 WNALIDGYLKCGDIEGAKELFKST-KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD 260
             AL+D + K G++E A+ +F      +N  ++N MIS + R G+   AR+LF+ M  +D
Sbjct: 296 KTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRD 355

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAACASLGALDQGIWIH 319
            ++W+++I GY ++G    ++E+F EM     I+P +  ++ VL+AC  +GAL    W+ 
Sbjct: 356 VVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVL 415

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379
           D V+  +I +      +L+ MY+KCG +  A ++F+ M  ++V ++N +I G A +G   
Sbjct: 416 DIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGK 475

Query: 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439
           +AI+L   M+ E + PD +T+  VL+AC+HAG+++ G      +Q      P V+HY C+
Sbjct: 476 EAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACM 530

Query: 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499
           VDLLGRAG L EA+ +I SMPM+P+A V+ +LL A R H  V  GE     L E+EPQN 
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL 590

Query: 500 --------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVK 545
                         R +DV ++R++MK+ G+K + G S ++  G +H+F  GD SH Q K
Sbjct: 591 GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSK 650

Query: 546 EIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATI 605
           +IY +L ++  K+K  G+  + S  L D++EEEKE     HSEKLAI F  + ++ G TI
Sbjct: 651 DIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTI 710

Query: 606 RVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RV+KNLR+C DCH+A K+ISK+  R+I+VRD  R+H F  G CSC+D+W
Sbjct: 711 RVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 239/496 (48%), Gaps = 52/496 (10%)

Query: 47  QHLKQAHA-VILKSGHFQDHYVSGTLVKC---HANSRFSNFELALKVFNSVHKPNVFVWN 102
           + L+Q H  ++  S H  +++VS  L+ C   HA+  + +      +F S   P+  V++
Sbjct: 15  RQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVD-----SIFTSSPSPDASVYS 69

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
            +L+         +V+SL+     ++ +P  F Y  + K      A K G   HA+V+K 
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AGKSGNMFHAYVLKL 124

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
           G   D  ++++ + MYA  G V+ AR + +  ++  +  WN++I G  K G+   A  LF
Sbjct: 125 GHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLF 184

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                +N  ++ +M++G+A+ G  E AR+ F+EM ++  ++W+A+   Y +    KEAL 
Sbjct: 185 NMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +F++M  + I P        +++C+S+G       I   + +  I +++ + TAL+DM+A
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 343 KCGRLDMA---------------WKV-----------------FEDMKMKEVFTWNAMIG 370
           K G L++A               W +                 F++M  ++V +WN+MI 
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 371 GLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
           G A +G +  +IELF +M     ++PD +T A VLSAC H G +      L  +++   I
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK-NI 423

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
              +  +  ++ +  + G +A+A  +  +M    +   +  L+     +G    G+   K
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGH---GKEAIK 479

Query: 490 ILLEMEPQNRRCDDVA 505
           ++L ME +    D V 
Sbjct: 480 LVLTMEEEGIEPDHVT 495


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/671 (32%), Positives = 348/671 (51%), Gaps = 69/671 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H  + K+G   D +V+ +LV  +A  R S    A ++F+ + + NV  W +++    
Sbjct: 98  RAVHGHMAKTGASADMFVATSLV--NAYMRCSAARDARRLFDGMPERNVVTWTALVTGYT 155

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +++P   + ++ EM+ +   P+ +T      AC  +     G QVH + +K G      
Sbjct: 156 LNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS 215

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI----------------------D 207
           + +S   +YA  G ++ A +      + +VI W  +I                      D
Sbjct: 216 MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMD 275

Query: 208 GYLK-----------CG---DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G +            CG   D+   K++    FK   + N    N+ +  + R G  +EA
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEA 335

Query: 250 RKLFNEMNDKDEITWSAIIDGYT------KDGYYK-----EALEVFNEMQRDKIKPRKFV 298
            +LF +M D   ITW+A+I GY       KD         +AL +F +++R  +KP  F 
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S +L+ C+++ AL+QG  IH    ++    D V+ +ALV+MY KCG +  A K F +M 
Sbjct: 396 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP 455

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            +   TW +MI G + HG+  +AI+LF +M+   +RP+ ITF  +LSAC++AG+++    
Sbjct: 456 TRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEH 515

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M++ Y I+P V+HYGC++D+  R G + +A   I     EPN A+W +L+  CR H
Sbjct: 516 YFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSH 575

Query: 479 GEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSM 524
           G +E        LLE++P+                R  DVA++RKLMK+  +      S 
Sbjct: 576 GNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSW 635

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP- 583
           I +   ++ FR  D +HPQ  E+Y +L+ ++EK K  GY P  +  L D +++EK  A  
Sbjct: 636 ITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGS 695

Query: 584 -KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
            K+HSE+LA+A G + T PGAT+RV KN+ +C DCHS+ KL S +  R+IIVRD  R H 
Sbjct: 696 LKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHK 755

Query: 643 FRNGKCSCNDF 653
           F++G+CSC DF
Sbjct: 756 FKDGRCSCGDF 766



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 7/294 (2%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK----ELFKSTKDKNTGSYNAMISG 239
           V +A  +L +G       +  L+   ++ G +  A+     + K+    +     ++++ 
Sbjct: 63  VQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNA 122

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R     +AR+LF+ M +++ +TW+A++ GYT +      LEVF EM      P  + L
Sbjct: 123 YMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTL 182

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L AC +   +D G  +H +  +        +G +L  +YAK G LD A + F  +  
Sbjct: 183 GATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPE 242

Query: 360 KEVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K V TW  MI   A      +  + LF  M  + + P+  T   V+S C     ++ G Q
Sbjct: 243 KNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ 302

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
              +  ++ G +  +      + L  R G   EA  +   M  + +   W A++
Sbjct: 303 VQAFSFKI-GCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMI 354



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 146/316 (46%), Gaps = 27/316 (8%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           +EF+  +++ +  T+   +    KQ  A   K G   +  V  + +  +   R    + A
Sbjct: 280 NEFTLTSVMSLCGTRLDLNLG--KQVQAFSFKIGCETNLPVKNSTMYLYL--RKGETDEA 335

Query: 87  LKVFNSVHKPNVFVWNSVLRACLE-----------HNEPWRVISLYSEMVGVDSKPNKFT 135
           +++F  +   ++  WN+++    +            +  ++ ++++ ++     KP+ FT
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           + ++   CS   A ++G Q+HA  +K+G   DV V S+ + MY   GC+  A +   +  
Sbjct: 396 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP 455

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARK 251
               + W ++I GY + G  + A +LF+  +      N  ++ +++S  +  G  EEA  
Sbjct: 456 TRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEH 515

Query: 252 LFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            F+ M  +  I      +  +ID + + G  ++A   F+ ++R   +P + + S ++A C
Sbjct: 516 YFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FSFIKRTGFEPNEAIWSSLVAGC 572

Query: 307 ASLGALDQGIWIHDHV 322
            S G ++   +  D +
Sbjct: 573 RSHGNMELAFYAADKL 588


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/616 (35%), Positives = 326/616 (52%), Gaps = 57/616 (9%)

Query: 96  PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA--CSITEADKEGV 153
           P V  + + +    +H  P   +S ++ M+ V  +PN FT+P+ FKA  C+       G 
Sbjct: 74  PTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGP 133

Query: 154 QVHAHVVKNG-LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL-----ID 207
           Q+HA  ++ G L GD  V  + + MY   GC+  AR++ ++    +VI WNA+     ID
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVID 193

Query: 208 G--------YLKCGDIEG--------------AKELFKSTK------------DKNTGSY 233
           G        Y    +  G              A  +F S              D +    
Sbjct: 194 GRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVS 253

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           NAM+  + +     +AR +F+ M  ++ ++W ++I  Y + G  ++AL V+   +    +
Sbjct: 254 NAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEE 313

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  F++S VL  CA L  L+ G  +H    R+ I  +  + +ALVDMY KCG ++ A +V
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACAHAGM 412
           F DM  + + TWNAMIGG A  G A +A+ +F  M R     P+ IT   V++AC+  G+
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGL 433

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
              G +    M++ +G++P  EHY C+VDLLGRAG    A E+I  MPM P+ +VW ALL
Sbjct: 434 TKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALL 493

Query: 473 GACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKT 518
           GAC+ HG+ E G    + L E++PQ+               R  +   +RK MK  GIK 
Sbjct: 494 GACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKK 553

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
            PG S I    V+H F   D  H +  EI  +L K+ ++++  GY P++   L+D++EEE
Sbjct: 554 EPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEE 613

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           KET    HSEKLA+AFG I+  P   IR+ KNLR+C DCH A K +S +  R+IIVRD  
Sbjct: 614 KETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNN 673

Query: 639 RYHHFRNGKCSCNDFW 654
           R+H+F+  +CSC D+W
Sbjct: 674 RFHYFKQFECSCKDYW 689



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 152/372 (40%), Gaps = 45/372 (12%)

Query: 51  QAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           Q HA+ L+ G+   D +VS   +  +  +      LA ++F  +   NV  WN+V+   +
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKT--GCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
               P      Y  +      PN  +    F AC+       G Q H  VV  G   DV 
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVS 251

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF------- 222
           V ++ +  Y    C  KAR + D     + + W ++I  Y + G  E A  ++       
Sbjct: 252 VSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTG 311

Query: 223 --------------------------------KSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                           +S  D N    +A++  + + G  E+A 
Sbjct: 312 EEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAE 371

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASL 309
           ++F +M +++ +TW+A+I GY   G  + AL VF+ M R     P    L  V+ AC+  
Sbjct: 372 QVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRG 431

Query: 310 GALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G    G  + D ++ R  +         +VD+  + G  + A+++ + M M+  +  W A
Sbjct: 432 GLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGA 491

Query: 368 MIGGLAMHGRAD 379
           ++G   MHG+ +
Sbjct: 492 LLGACKMHGKTE 503



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 15/276 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  ++  G   D  VS  +V  +   R +    A  VF+ +   N   W S++ A  
Sbjct: 235 EQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAG--KARAVFDGMRVRNSVSWCSMIVAYA 292

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +H      +++Y        +P  F   +V   C+       G  +HA  V++ +  ++ 
Sbjct: 293 QHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIF 352

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V S+ + MY   G V  A Q+  D  + +++ WNA+I GY   GD + A  +F +     
Sbjct: 353 VASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSG 412

Query: 230 TGSYNAM-----ISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
             S N +     I+  +R G  ++  +LF+ M ++  +      ++ ++D   + G  + 
Sbjct: 413 GTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEER 472

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           A E+   +QR  ++P   V   +L AC   G  + G
Sbjct: 473 AYEI---IQRMPMRPSISVWGALLGACKMHGKTELG 505


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/625 (34%), Positives = 337/625 (53%), Gaps = 71/625 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLV----KCHANSRFSNFELALKVFNSVHKPNVFVWNSVL 105
           K  HA I+K G  Q   ++ TLV    KC A S       AL+VF+ +   +   W SVL
Sbjct: 91  KALHAHIVKLGIVQCCPLANTLVNVYGKCGAASH------ALQVFDEMPHRDHIAWASVL 144

Query: 106 RACLEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
            A  + N   + +S++S +      +P+ F +  + KAC+   +   G QVH H + +  
Sbjct: 145 TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 204

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             D  VKSS + MYA  G +N A+ + D     + I W A++ GY K G  E A ELF+ 
Sbjct: 205 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 264

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
              KN  S+ A+ISGF + G+  EA  +F EM                     +E +++ 
Sbjct: 265 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMR--------------------RERVDIL 304

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
           + +          VLS ++ ACA+L A   G  +H              G AL+DMYAKC
Sbjct: 305 DPL----------VLSSIVGACANLAASIAGRQVH--------------GNALIDMYAKC 340

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
             +  A  +F  M+ ++V +W ++I G+A HG+A+ A+ L+  M    ++P+ +TF  ++
Sbjct: 341 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 400

Query: 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN 464
            AC+H G +++G +    M + YGI P ++HY C++DLLGR+G L EAE +I +MP  P+
Sbjct: 401 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 460

Query: 465 AAVWEALLGACRKHGEVEFGERLGK---------------ILLEMEPQNRRCDDVAKMRK 509
              W ALL AC++ G  + G R+                 +L  +         V++ R+
Sbjct: 461 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARR 520

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSS 568
            + E  ++ +PG S ++V      F  G+ SHP  ++I+ +LKK+ E++++  GY P++S
Sbjct: 521 KLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTS 580

Query: 569 QVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVF 628
            +L D+DE+EKE    +HSE+ A+A+G +   PG  IR++KNLRVC DCH   K IS++ 
Sbjct: 581 WILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT 640

Query: 629 KRDIIVRDRVRYHHFRNGKCSCNDF 653
           +R+IIVRD  RYHHF+ GKCSCNDF
Sbjct: 641 EREIIVRDATRYHHFKGGKCSCNDF 665


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 322/588 (54%), Gaps = 78/588 (13%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + + A+KVF+ + + NV  WN+++   ++       + L+ EM  +   P++FT  +V +
Sbjct: 38  DLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLR 97

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
            C+   A   G QVHA+V                               L  G + +++ 
Sbjct: 98  GCAGLRASYAGKQVHAYV-------------------------------LKYGYEFNLVV 126

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261
            ++L   Y+K G +   +++ K+ + +N                                
Sbjct: 127 GSSLAHMYMKSGSLGEGEKVIKAMRIRNV------------------------------- 155

Query: 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIH-D 320
           + W+ +I G  ++G+++  L+++N M+   ++P K  L  V+++ A L  L QG  IH +
Sbjct: 156 VAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAE 215

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADD 380
            +K  +    AVL ++L+ MY+KCG L+ + K   D +  +   W++MI     HGR ++
Sbjct: 216 AIKAGANSAVAVL-SSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEE 274

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440
           A+ LF +M++E +  + +TF  +L AC+H G+ ++G+     M + YG+ P +EHY C+V
Sbjct: 275 AVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVV 334

Query: 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-- 498
           DLLGR+G L EAE +I SMP+E +  +W+ LL ACR H   +   R  + +L + PQ+  
Sbjct: 335 DLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSA 394

Query: 499 ------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKE 546
                       +R  DV+K+R  M++R +K  PG S ++V   + +F  GD SHP  +E
Sbjct: 395 TYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEE 454

Query: 547 IYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIR 606
           I L LK+++E++K+ GY P+++ V  D D EEKE +   HSEKLAIAFG +N  PG+ IR
Sbjct: 455 IDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIR 514

Query: 607 VIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           V+KNLR+C DCH A KLIS +  R+IIVRD  R+HHF++GKCSC D+W
Sbjct: 515 VMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 156/315 (49%), Gaps = 12/315 (3%)

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
           Y K G+I+ A   F +   +N  S+N +I+G  + G  + A K+F+EM +++  TW+A++
Sbjct: 2   YFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMV 61

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
            G  +  + +  L +F EM      P +F L  VL  CA L A   G  +H +V +    
Sbjct: 62  SGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYE 121

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
            + V+G++L  MY K G L    KV + M+++ V  WN +I G A +G  +  ++L+  M
Sbjct: 122 FNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMM 181

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
           +   +RPD+IT   V+S+ A    + +G Q +       G +  V     ++ +  + G 
Sbjct: 182 KMSGLRPDKITLVSVISSSAELATLFQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGC 240

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMR 508
           L ++ + +      P++ +W +++ A   HG    GE    +  +ME +    +DV  + 
Sbjct: 241 LEDSMKALLDCE-HPDSVLWSSMIAAYGFHGR---GEEAVHLFEQMEQEGLGGNDVTFLS 296

Query: 509 KL-------MKERGI 516
            L       +KE+G+
Sbjct: 297 LLYACSHNGLKEKGM 311



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 38/271 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           KQ HA +LK G+  +  V  +L   H   +  +     KV  ++   NV  WN+++    
Sbjct: 109 KQVHAYVLKYGYEFNLVVGSSL--AHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNA 166

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           ++     V+ LY+ M     +P+K T  +V  + +      +G Q+HA  +K G    V 
Sbjct: 167 QNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVA 226

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V SS I MY+  GC+  + + L D    D + W+++I  Y                    
Sbjct: 227 VLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAY-------------------- 266

Query: 230 TGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFN 285
                    GF   GR EEA  LF +M  +    +++T+ +++   + +G  ++ +  F 
Sbjct: 267 ---------GF--HGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFK 315

Query: 286 EM-QRDKIKPRKFVLSCVLAACASLGALDQG 315
            M ++  +KPR    +CV+      G LD+ 
Sbjct: 316 LMVEKYGLKPRLEHYTCVVDLLGRSGCLDEA 346


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/660 (31%), Positives = 333/660 (50%), Gaps = 58/660 (8%)

Query: 51  QAHAVILKSGHFQDHY--VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           Q HA  +K G   + +  VS  L+K +   R    +LA  +F  + + +   +N+++   
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR--RLDLACVLFEEIPEKDSVTFNTLITGY 225

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +       I L+ +M     +P+ FT+  V KA         G Q+HA  V  G   D 
Sbjct: 226 EKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----- 223
            V +  +  Y+    V + R + D+  + D + +N +I  Y +    E +   F+     
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCM 345

Query: 224 ----------------------------------STKDKNTGSYNAMISGFARFGRFEEA 249
                                             +T D      N+++  +A+   FEEA
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEA 405

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
             +F  +  +  ++W+A+I GY + G +   L++F +M+   ++  +   + VL A AS 
Sbjct: 406 ELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASF 465

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            +L  G  +H  + R+    +   G+ LVDMYAKCG +  A +VFE+M  +   +WNA+I
Sbjct: 466 ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALI 525

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
              A +G  + AI  F KM    ++PD ++   VL+AC+H G +++G +    M  +YGI
Sbjct: 526 SAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGI 585

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P+ +HY C++DLLGR G  AEAE+++  MP EP+  +W ++L ACR H      ER  +
Sbjct: 586 TPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAE 645

Query: 490 ILLEMEPQNRRC---------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEF 534
            L  ME                     + V  ++K M+ERGIK  P  S ++VN  IH F
Sbjct: 646 KLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVF 705

Query: 535 RTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
            + D +HP   EI   + ++  +++ EGY P++S V+ D+DE+ K  + KYHSE+LA+AF
Sbjct: 706 SSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAF 765

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             I+T  G  I V+KNLR C DCH+A KLISK+ KR+I VRD  R+HHF  G CSC D+W
Sbjct: 766 ALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 7/277 (2%)

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248
           +I+  G  +D    N +++  L+ G +  A++++     KNT S N MISG  + G    
Sbjct: 38  RIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSS 97

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVLAAC 306
           AR LF+ M D+  +TW+ ++  Y ++ ++ EA ++F +M R      P     + +L  C
Sbjct: 98  ARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTA--LVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
                 +    +H    +     +  L  +  L+  Y +  RLD+A  +FE++  K+  T
Sbjct: 158 NDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVT 217

Query: 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL-QALTYM 423
           +N +I G    G   ++I LF KM++   +P   TF+ VL A    G+ D  L Q L  +
Sbjct: 218 FNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQQLHAL 275

Query: 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
               G   +      I+D   +   + E   +   MP
Sbjct: 276 SVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 129/272 (47%), Gaps = 14/272 (5%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103
           +S Q  +Q H   L +      +V  +LV  +A      FE A  +F S+ +     W +
Sbjct: 365 SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM--FEEAELIFKSLPQRTTVSWTA 422

Query: 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           ++   ++       + L+++M G + + ++ T+ TV KA +   +   G Q+HA ++++G
Sbjct: 423 LISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG 482

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGA----K 219
              +V   S  + MYA  G +  A Q+ ++    + + WNALI  +   GD E A     
Sbjct: 483 NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFA 542

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKD 274
           ++ +S    ++ S   +++  +  G  E+  + F  M+    IT     ++ ++D   ++
Sbjct: 543 KMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRN 602

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           G + EA ++ +EM     +P + + S VL AC
Sbjct: 603 GRFAEAEKLMDEM---PFEPDEIMWSSVLNAC 631



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 168/406 (41%), Gaps = 49/406 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA+ + +G  +D  V   ++  +  S+         +F+ + + +   +N V+ +  
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFY--SKHDRVLETRMLFDEMPELDFVSYNVVISSYS 327

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           + ++    +  + EM  +      F + T+    +   + + G Q+H   +       +H
Sbjct: 328 QADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN 229
           V +S + MYA      +A  I     +   + W ALI GY++ G      +LF   +  N
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447

Query: 230 --------------TGSYNAMISG-------------------------FARFGRFEEAR 250
                         + S+ +++ G                         +A+ G  ++A 
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F EM D++ ++W+A+I  +  +G  + A+  F +M    ++P    +  VL AC+  G
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567

Query: 311 ALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAM 368
            ++QG  +         I         ++D+  + GR   A K+ ++M  + +   W+++
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 627

Query: 369 IGGLAMH---GRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +    +H     A+ A E  F M  EK+R D   +  + +  A AG
Sbjct: 628 LNACRIHKNQSLAERAAEKLFSM--EKLR-DAAAYVSMSNIYAAAG 670


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 313/542 (57%), Gaps = 49/542 (9%)

Query: 37  ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96
           +L+  C TS + L++ HA ++K+G  +D  ++ + V     S   +   A  VF  +  P
Sbjct: 1   MLDKNC-TSMKDLQKIHAQLIKTGLAKDT-IAASRVLAFCTSPAGDINYAYLVFTQIRNP 58

Query: 97  NVFVWNSVLRACLEHNEPWRVISLYSEMVGVD--SKPNKFTYPTVFKACSITEADKEGVQ 154
           N+FVWN+++R   + + P   ISL+ +M+     ++P + TYP+VFKA +      EG Q
Sbjct: 59  NLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQ 118

Query: 155 VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD 214
           +H  V+K GL  D  ++                               N +++ Y+ CG 
Sbjct: 119 LHGRVIKLGLENDQFIQ-------------------------------NTILNMYVNCGF 147

Query: 215 IEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
           +  A+ +F      +  ++N MI G A+ G  +++R+LF++M  ++ ++W+++I GY + 
Sbjct: 148 LGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRK 207

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
           G + EA+E+F+ MQ + IKP +F +  +L ACA LGAL QG WIHD++ +N+  +++++ 
Sbjct: 208 GRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVI 267

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TA++DMY+KCG +D A +VF+    K +  WN++I GLAM GR ++A+ LF K++   ++
Sbjct: 268 TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLK 327

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           PD ++F  VL+AC HAGM+DR       M + Y I+P ++HY C+VD+LGRAG L EAEE
Sbjct: 328 PDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEE 387

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC------------- 501
           +I SMP+ P+A +W +LL +CR++G +E  ++  K + E++P                  
Sbjct: 388 LIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNH 447

Query: 502 -DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            ++  + R  +KE+ +   PG S+I+VNG +HEF  G   HP+ K+IY  L  +   LK 
Sbjct: 448 FEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKE 507

Query: 561 EG 562
            G
Sbjct: 508 MG 509


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 313/583 (53%), Gaps = 55/583 (9%)

Query: 127 VDSKPNKFT-YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVN 185
           + S PN +  Y +V ++C  + +   G Q+H  ++ +GL  D  + +  + +YA  G V 
Sbjct: 55  IASSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVG 114

Query: 186 KARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYN----------- 234
            AR++ D   K +V  WN LI  Y + G  E A +L++   D      N           
Sbjct: 115 HARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACA 174

Query: 235 ----------------------------AMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
                                        ++  +A+ G  ++AR +F+ +  +D + W++
Sbjct: 175 ALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNS 234

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I  Y ++G   EAL +  +M  + + P    L   ++A A   AL +G  +H    R  
Sbjct: 235 MIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRG 294

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
                 L T+LVDMYAK G + +A  +FE +  +E+ +WNAMI G  MHG  D+A++LF 
Sbjct: 295 FDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFN 354

Query: 387 KMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           KM+ E ++ PD ITF  VLSAC H GM+    +    M  +Y I P V+H+ C+VD+LG 
Sbjct: 355 KMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGH 414

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------- 496
           AG   EA ++I  MPM+P++ +W ALL  C+ H  VE GE   + L+E+EP         
Sbjct: 415 AGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLL 474

Query: 497 -----QNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                Q+ + +  A++RKLM  RG+K   G S I++ G  H F  GD SHP+  EIY  L
Sbjct: 475 SNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEEL 534

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++   +   GY P++  V  D+ ++EK    + HSE+LAIAFG I+T  G  + V KNL
Sbjct: 535 ERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNL 594

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           RVCEDCH   KLIS++ +R+II+RD  RYHHF NG+CSC D+W
Sbjct: 595 RVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 44/368 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H  +L SG   D  ++  LV  +A         A ++F+ + K NVF+WN ++RA  
Sbjct: 82  RQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGH--ARRLFDGMPKRNVFLWNVLIRAYA 139

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   I LY  MV    +P+ FTYP   KAC+     + G +VH  V+      D+ 
Sbjct: 140 RDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMF 199

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK----------CGDIEG-- 217
           V +  + MYA  GCV+ AR + D     D + WN++I  Y +          C D+    
Sbjct: 200 VCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANG 259

Query: 218 -----------------------AKEL----FKSTKDKNTGSYNAMISGFARFGRFEEAR 250
                                   +EL    ++   D+      +++  +A+ G  + AR
Sbjct: 260 VGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVAR 319

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASL 309
            LF ++  ++ ++W+A+I GY   G++ EAL++FN+M+ + ++ P       VL+AC   
Sbjct: 320 VLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHG 379

Query: 310 GALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNA 367
           G + +   +    V   SI       T LVD+    GR + A+ + + M M+ +   W A
Sbjct: 380 GMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGA 439

Query: 368 MIGGLAMH 375
           ++ G  +H
Sbjct: 440 LLNGCKIH 447


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/654 (34%), Positives = 348/654 (53%), Gaps = 62/654 (9%)

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
           G   D +VS  L+  +   R + F  A  VF  +   +V  WN++L     H      I+
Sbjct: 130 GLHTDLFVSTALIDLYI--RCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA 187

Query: 120 LYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD---VHVKSSGI 175
              +M      +PN  T  ++    +   A  +G  +HA+ ++  L  +   V + ++ +
Sbjct: 188 HLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALL 247

Query: 176 QMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----------- 223
            MYA C   V   R       ++DV  W+ALI G++ C  +  A  LFK           
Sbjct: 248 DMYAKCKQLVYACRVFHGMPVRNDV-TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 224 ------------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFN 254
                       S  D + G+                  N+++S +A+ G   EA   F+
Sbjct: 307 ATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           E+  KD I++ A++ G  ++G  +EA  VF +MQ   ++P    +  ++ AC+ L AL  
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQH 426

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G   H  V    + ++  +  +L+DMYAKCG++D++ +VF+ M  ++V +WN MI G  +
Sbjct: 427 GKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG   +A  LF  M+ +   PD +TF C+++AC+H+G++  G      M   YGI P +E
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRME 546

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLL R G L EA + I SMP++ +  VW ALLGACR H  ++ G+++ +I+ ++
Sbjct: 547 HYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKL 606

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
            P+                R D+ A++R + K +G K +PG S I++NG +H F  GD S
Sbjct: 607 GPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQS 666

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP  ++IY  L  I+  +K  GY  ++S VL D++EEEKE A  YHSEKLAIAFG ++ +
Sbjct: 667 HPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLN 726

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              TI V KNLRVC DCH+A K ++ V  R IIVRD  R+HHF+NG+CSC +FW
Sbjct: 727 EDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 203/467 (43%), Gaps = 49/467 (10%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
              LA +VF+ +  P+   +N+++RA          I LY  M+     PNK+T+P V K
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS     + G  +HAH    GL  D+ V ++ I +Y        AR +       DV+ 
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 202 WNALIDGYLKCG-------------DIEGAKE-----------------LFKSTK----- 226
           WNA++ GY   G             D  G +                  LF+ T      
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 227 --------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                   ++      A++  +A+  +   A ++F+ M  ++++TWSA+I G+       
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMT 288

Query: 279 EALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           EA  +F +M  + +       ++  L  CASL  L  G  +H  + ++ I  D     +L
Sbjct: 289 EAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSL 348

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYAK G ++ A   F+++ +K+  ++ A++ G   +G+A++A  +F KMQ   M PD 
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDI 408

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            T   ++ AC+H   +  G  +   +  + G+  E      ++D+  + G +  + +V  
Sbjct: 409 ATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSLIDMYAKCGKIDLSRQVFD 467

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            MP   +   W  ++     HG    G+    + L M+ Q    DDV
Sbjct: 468 KMPAR-DVVSWNTMIAGYGIHG---LGKEATTLFLGMKNQGFAPDDV 510



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 4/234 (1%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+   AR++F+ +   D   ++A+I  Y+  G +  A++++  M R ++ P K+    VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC++L  L  G  IH H     +  D  + TAL+D+Y +C R   A  VF  M M++V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            WNAM+ G A HG    AI     MQ    +RP+  T   +L   A  G + +G     Y
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 423 MQQ--MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             +  +   + +V     ++D+  +   L  A  V   MP+  N   W AL+G 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGG 280



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 34/343 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA+I KSG   D   S +L+  +A +   N   A   F+ +   +   + ++L  C++
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLIN--EATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +      ++ +M   + +P+  T  ++  ACS   A + G   H  V+  GL  +  +
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S I MYA  G ++ +RQ+ D     DV+ WN +I GY   G  + A  LF   K++  
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 231 G----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEAL 281
                ++  +I+  +  G   E +  F+ M  K  I      +  ++D   + G   EA 
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAY 565

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------- 334
           +    M    +K    V   +L AC     +D G  +   +++        LG       
Sbjct: 566 QFIQSM---PLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK--------LGPEGTGNF 614

Query: 335 TALVDMYAKCGRLDMAWKV-----FEDMKMKEVFTWNAMIGGL 372
             L ++++  GR D A +V      +  K    ++W  + G L
Sbjct: 615 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G+L +A +VF+ +   +   +NA+I   +  G    AI+L+  M R ++ P++ TF  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 405 SACAHAGMID-RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
            AC  + ++D R  + +       G+  ++     ++DL  R      A  V + MPM  
Sbjct: 108 KAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR- 164

Query: 464 NAAVWEALLGACRKHG 479
           +   W A+L     HG
Sbjct: 165 DVVAWNAMLAGYANHG 180


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/635 (33%), Positives = 338/635 (53%), Gaps = 72/635 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  +++SG   + +V  +L++ +  S+  +   A+K+F  +   +V +W+S++ A   H 
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELY--SKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHG 418

Query: 113 EPWRVISLYSEMV----GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
                + ++ +M+    G+ S       P V    +IT                 L   +
Sbjct: 419 RGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCT--------------LATHI 464

Query: 169 HVKSSGIQMYACFGCVNKARQILD-------DGSKSDVICWNALIDGYLKCGDIEGAKEL 221
             K     M A F  +    +I         D SKS++  +    D  +           
Sbjct: 465 PWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRI----------- 513

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
                      +  M   +  F R + A  +F ++ +     W+ +I G+  DG +  +L
Sbjct: 514 --------LTKFAIM---YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSL 562

Query: 282 EVFNEMQRDKIKP--------RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVL 333
           E++++M    +KP        R  +LS VL AC +LGAL +G W H +V +     D ++
Sbjct: 563 ELYSKMMEKGLKPDNSGVIPNRVSILS-VLLACGNLGALRKGEWFHSYVIQTGFEFDILV 621

Query: 334 GTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393
            TA++DMY+KCG LD+A  +F++   K++  W+AMI    +HG    AI+LF +M +  +
Sbjct: 622 ATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGV 681

Query: 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453
           RP  +TF CVLSAC+H+G+++ G      M + + I  ++ +Y C+VDLLGRAG L+EA 
Sbjct: 682 RPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAV 741

Query: 454 EVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNR 499
           ++I +MP+EP+A++W +LLGACR H  ++  E++   L  ++P                 
Sbjct: 742 DLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKS 801

Query: 500 RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           R ++V K+RK+M  RG     G S+++ +  +H+F  GD SHPQ +++Y  L+++   +K
Sbjct: 802 RWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMK 861

Query: 560 MEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHS 619
             GY P +  VL DI+EE KE A  YHSE+LAIAFG INT PG T+R+ KNLR+C DCH+
Sbjct: 862 HLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHN 921

Query: 620 ATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           A KLISK+  R I+VRD  R+H F +G CSC D+W
Sbjct: 922 AIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 197/432 (45%), Gaps = 77/432 (17%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           S++ ++D+    C+   + + Q H+ + K+G   D + +  L   +A  + ++ + A KV
Sbjct: 3   SRQVLVDLFQA-CNNG-RSVSQLHSQVFKTGILHDTFFATKLNSLYA--KCASLQAARKV 58

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEA 148
           F+    PNV +WNS LR+     +    + L+  M+      P+ FT P   KAC+    
Sbjct: 59  FDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRM 118

Query: 149 DKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALID 207
            + G  +H    KN   G D+ V S+ +++Y+  G + +A ++ ++  + D + W +++ 
Sbjct: 119 LELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVT 178

Query: 208 GYLKCGDIEGA------------------------------------KELFKSTKDKNTG 231
           GY +  D E A                                      LF    +K+  
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVI 238

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDK-------------------------------- 259
           S++ MI+ +A      EA  LF+EM +K                                
Sbjct: 239 SWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIA 298

Query: 260 ---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316
              D ++W A++ GY ++G   +++ VF  M  D I+P    +  +LAA + LG   Q +
Sbjct: 299 VWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL 358

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            +H +V R+    +  +G +L+++Y+KCG L  A K+F+ M +++V  W++MI    +HG
Sbjct: 359 CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHG 418

Query: 377 RADDAIELFFKM 388
           R  +A+E+F +M
Sbjct: 419 RGGEALEIFDQM 430



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 18/289 (6%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           +F+AC+     +   Q+H+ V K G+  D    +    +YA    +  AR++ D+    +
Sbjct: 10  LFQACN---NGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 199 VICWNALIDGYLKCGDIEGAKELFK---STKDKNTGSYNAMISGFARFG-RFEEARKL-- 252
           V  WN+ +  Y +    E    LF     T  +   ++   I+  A  G R  E  K+  
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 253 -FNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
            F + ND+   D    SA+++ Y+K G   EAL+VF E QR    P   + + ++     
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR----PDTVLWTSMVTGYQQ 182

Query: 309 LGALDQGIWIHDH-VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
               ++ + +    V  +    D  L  +L+++YAK G   +A  +F  M  K+V +W+ 
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416
           MI   A +  A++A+ LF +M  ++  P+ +T    L ACA +  ++ G
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 291


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/632 (32%), Positives = 341/632 (53%), Gaps = 55/632 (8%)

Query: 78  SRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYP 137
           S  ++   AL++F ++ + N   W +++    ++      ++ ++ M      P +F   
Sbjct: 67  SHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALS 126

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS 197
           +  +A +   A   G Q+H   V+ G   ++ V S+   MY+  G +++A ++ D   + 
Sbjct: 127 SAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK 186

Query: 198 DVICWNALIDGYLKCGDIEGAKELFKSTKDKN---------------------------- 229
           D + W A+IDGY K G +E A   F+  K +                             
Sbjct: 187 DAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSI 246

Query: 230 ------------TGSYNAMISGFARFGRFEEARKLFN-EMNDKDEITWSAIIDGYTKDGY 276
                           NA+I  +A+    E A ++   +    + ++ +++IDGY +   
Sbjct: 247 HCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDC 306

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
            +EAL ++ E++R  ++P +F  S ++  CA    L+QG  +H  V +  +  D+ +G+ 
Sbjct: 307 VEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST 366

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           LVDMY KCG + ++ ++F +++ +    WNA+I   A HG   +AI+ F +M    +RP+
Sbjct: 367 LVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPN 426

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            I F  +L+AC+HAG++D GL+    M++ +GI+P+ EHY CI+D  GRAG L EA + I
Sbjct: 427 HIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFI 486

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
           S MP++PNA  W +LLGACR  G  E GE   + L+++EP N               + +
Sbjct: 487 SEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWE 546

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DV  +RKLM++  IK  PG S +D N   H F + D SHPQ K+IY  L+++  ++K EG
Sbjct: 547 DVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEG 606

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           Y P++S +  ++++  KE   +YHSE++A+AF  I+      I V KNLR+C DCH+A K
Sbjct: 607 YIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFK 666

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            I KV +RDIIVRD  R+HHF NG+CSC D+W
Sbjct: 667 FICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 126/276 (45%), Gaps = 15/276 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN-SVHKPNVFVWNSVLRAC 108
           K  H  + K+G   +  V   L+  +A S   + E A +V        NV    S++   
Sbjct: 244 KSIHCCVTKAGFELEVAVRNALIDMYAKSM--DVESASRVLKIDPGGWNVVSGTSMIDGY 301

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +E +     + +Y E+     +PN+FT+ ++ K C++    ++G Q+HA V+K  L  D 
Sbjct: 302 IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDS 361

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGD----IEGAKELFKS 224
            V S+ + MY   G ++ + Q+ ++      I WNA+I+ + + G     I+    +  S
Sbjct: 362 FVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYS 421

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
               N  ++ ++++  +  G  +E  K F  M +   I      +S IID Y + G   E
Sbjct: 422 GIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDE 481

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           A +  +EM    IKP  +    +L AC   G+ + G
Sbjct: 482 AYKFISEM---PIKPNAYGWCSLLGACRMRGSKELG 514



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 208 GYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAI 267
           G L+ G +  A+ +       +T   N +I+ ++       A +LF  M  ++ ++W+ +
Sbjct: 34  GDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTL 93

Query: 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327
           + G +++  + +AL  F  M+R  + P +F LS    A A+LGA   G  +H    R   
Sbjct: 94  VSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGF 153

Query: 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFK 387
             +  + + L DMY+KCG L  A +VF+ M  K+   W AMI G A +G  + A+  F  
Sbjct: 154 DTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRD 213

Query: 388 MQREKM-RPDRITFACVLSACAHAGMIDRGL-QALTYMQQMYGIDPEVEHYGCIVDLLGR 445
           M+RE +   D+  F  VLS  A  G+ D  L +++       G + EV     ++D+  +
Sbjct: 214 MKREGLVGADQHVFCSVLS--ASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 271

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           +  +  A  V+    ++P    W  + G     G +E
Sbjct: 272 SMDVESASRVLK---IDPGG--WNVVSGTSMIDGYIE 303


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/496 (38%), Positives = 299/496 (60%), Gaps = 24/496 (4%)

Query: 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY---NAMIS 238
           G +  AR++L   S  DVI WNAL++GY + GD++  + LF + + +   +      +++
Sbjct: 277 GELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVN 336

Query: 239 GFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298
            + + GR ++AR++ + M  +  ++W+A+I  Y ++G   EA+ +F  M  +  +P    
Sbjct: 337 LYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDIT 396

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAV-LGTALVDMYAKCGRLDMAWKVFED- 356
           L  V+ +CA LG L  G  IH  ++ + +   ++ L  A++ MY KCG L++A +VFE  
Sbjct: 397 LISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESV 456

Query: 357 -MKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPDRITFACVLSACAHAGMID 414
            ++ + V TW AMI   A +G  ++AIELF +M  +    P+R+TF  VLSAC+H G ++
Sbjct: 457 PLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLE 516

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI-SSMPMEPNAAVWEALLG 473
           +  +    M   +G+ P  +HY C+VDLLGRAG L EAE+++      E +   W A L 
Sbjct: 517 QAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLS 576

Query: 474 ACRKHGEVEFGERLGKILLEMEPQN---------------RRCDDVAKMRKLMKERGIKT 518
           AC+ +G++E  +R  K + E+EP+N               RR D VA++R  MK  G+K 
Sbjct: 577 ACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRAD-VARIRNEMKSSGVKK 635

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
             G S I++N  +HEF   D SHP+  EIY  L+++  ++K  GY P++  VL D+DEE+
Sbjct: 636 FAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEK 695

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           K     YHSE+LA+A G I+T PG T+RV+KNLRVC DCH+ATK IS++  R IIVRD  
Sbjct: 696 KAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTS 755

Query: 639 RYHHFRNGKCSCNDFW 654
           R+HHF++G CSC D+W
Sbjct: 756 RFHHFKDGVCSCGDYW 771



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 204/477 (42%), Gaps = 46/477 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H  I +S H  +  ++  L+      +  + + A  VFN V  PN + W+ +++A +
Sbjct: 27  KILHDEIARSPHGDNRRLTNLLIDLFG--KCGDPDAARAVFNRVRLPNEYSWSCIIQAYV 84

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGLCG-- 166
             +      +L+  M G D+    FT+  +  A   I   D      H  +    +    
Sbjct: 85  SSSRIHDARALFDSMPGFDA----FTWNIMIAAYARINRLDDARELFHGMISGRDVVSWA 140

Query: 167 -------------------------DVHVKSSGIQMYACFGCVNKARQILD---DGSKSD 198
                                    D    +S +Q YA  G + +A+++ D        D
Sbjct: 141 ILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRD 200

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
               NA+I  Y K   ++ A+ LF   K +N  S++ ++  +A+ G  + A+K F+ M  
Sbjct: 201 ATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQ 260

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +D I ++A+    +  G  + A E+   +    +       + +L   +  G LD+   +
Sbjct: 261 RDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDV----IAWNALLEGYSRTGDLDEVRRL 316

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
              ++  ++    V GT LV++Y KCGR+D A +V + M ++   +W AMI   A +G A
Sbjct: 317 FSAMEHRTVATTVVAGT-LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNA 375

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
            +AI LF  M  E   P  IT   V+ +CA  G +  G +    ++        +     
Sbjct: 376 AEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNA 435

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAV-WEALLGACRKHGEVEFGERLGKILLEM 494
           ++ + G+ G L  A EV  S+P+   + V W A++ A  ++G    GE   ++  EM
Sbjct: 436 VITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNG---VGEEAIELFQEM 489



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 166/372 (44%), Gaps = 44/372 (11%)

Query: 140 FKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199
            +AC+I     E   +H  + ++    +  + +  I ++   G  + AR + +     + 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 200 ICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-ND 258
             W+ +I  Y+    I  A+ LF S    +  ++N MI+ +AR  R ++AR+LF+ M + 
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISG 133

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC--VLAACASLGALDQGI 316
           +D ++W+ ++ GY +    +EA  +F  M      P    ++C  VL   A  G L +  
Sbjct: 134 RDVVSWAILVAGYARHDRLEEASALFRRM------PLWDTVTCTSVLQGYAHNGHLAEAQ 187

Query: 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHG 376
            + D +   +   DA    A++  Y K  R+D+A  +F  +K++   +W+ ++   A +G
Sbjct: 188 ELFDRIG-GAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNG 246

Query: 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI--DPEVE 434
             D A + F +M +     D I F  + +  +  G +    + L Y+  +  I  +  +E
Sbjct: 247 HLDLAKKSFDRMPQR----DSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLE 302

Query: 435 HY---------------------------GCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
            Y                           G +V+L G+ G + +A  V+ +MP+  + + 
Sbjct: 303 GYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVS- 361

Query: 468 WEALLGACRKHG 479
           W A++ A  ++G
Sbjct: 362 WTAMIAAYAQNG 373



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 56/258 (21%)

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY------------LKCGDIEG 217
           V  + + +Y   G V+ AR++LD       + W A+I  Y             +C D+EG
Sbjct: 330 VAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEG 389

Query: 218 AK-------------------ELFKSTKDKNTGS---------YNAMISGFARFGRFEEA 249
           A+                    L K    +   S          NA+I+ + + G  E A
Sbjct: 390 AEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELA 449

Query: 250 RKLFNE--MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAAC 306
           R++F    +  +  +TW+A+I  Y ++G  +EA+E+F EM  D   +P +     VL+AC
Sbjct: 450 REVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSAC 509

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTA------LVDMYAKCGRLDMAWKVFEDMK-- 358
           + LG L+Q  W H      S+  D  +  A      LVD+  + GRL  A K+    K  
Sbjct: 510 SHLGQLEQA-WEH----FCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDF 564

Query: 359 MKEVFTWNAMIGGLAMHG 376
             +V  W A +    M+G
Sbjct: 565 EADVVCWIAFLSACQMNG 582



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%)

Query: 82  NFELALKVFNSV--HKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD--SKPNKFTYP 137
           N ELA +VF SV     +V  W +++RA  ++      I L+ EMV +D  ++PN+ T+ 
Sbjct: 445 NLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMV-IDGGTEPNRVTFL 503

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACF-------GCVNKARQI 190
           +V  ACS      +  Q   H    G   D  V  +G   Y C        G + +A ++
Sbjct: 504 SVLSACSHL---GQLEQAWEHFCSMG--PDFGVPPAG-DHYCCLVDLLGRAGRLGEAEKL 557

Query: 191 L--DDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGR 245
           L      ++DV+CW A +      GD+E ++   K   +   +N      + + +A  GR
Sbjct: 558 LLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGR 617

Query: 246 FEEARKLFNEMNDKDEITWSA---------IIDGYTKDGYYKEALEVFNEMQR 289
             +  ++ NEM       ++          + +    D  +   LE+++E++R
Sbjct: 618 RADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELER 670


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 326/627 (51%), Gaps = 92/627 (14%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFN-----SVHKPNVFVWNSVL 105
           Q HA +L++G      V+ T       +       AL V +     +   P+ F  NS+L
Sbjct: 38  QLHAHLLRTGLLALSPVTTTAAFLSLAAASLPSHRALAVLDHHLTAASSLPSTFQCNSIL 97

Query: 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGL 164
           R     ++P   +     M  +  + N FT   + K  C++  A     Q+HA+VV    
Sbjct: 98  RVL---SDPSDALRFLRRMRALGRRGNAFTLAILLKPRCALAHAR----QLHANVVA--- 147

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
                                       +G   D +   +L+  Y   GD +GA      
Sbjct: 148 ----------------------------EGHLRDALLATSLMACYANRGDGDGA------ 173

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
                                    RKLF EM  +D + W+ +I    ++   K+AL++F
Sbjct: 174 -------------------------RKLFGEMPARDAVAWNVLISCCARNRRTKDALKLF 208

Query: 285 NEMQ-RDK-IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
            EM+ RD   +P       +L AC SLGALD G  +  + + +       +  +L+ MY+
Sbjct: 209 EEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYS 268

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           +CG +D A++VF     K V TW+AMI GLA +G  DDAI  F +M R  + PD  TF  
Sbjct: 269 RCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTG 328

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS-MPM 461
           VLSAC+H+G++D G +    M+  YG+ P V HYGCIVDL+GRAG L EA E++++ M +
Sbjct: 329 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKV 388

Query: 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
            P+A +W  LLGACR HG V+ GER+   L+E++ Q                    V+++
Sbjct: 389 APDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEV 448

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RKLM+E+GI+T PG + ++ NG ++EF   D +HP+  EIY  L +I ++L++ GY PN 
Sbjct: 449 RKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNV 508

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
           S  L D+D E KE+A  YHSEKLAIAF  + T     IR+ KNLRVC DCH+ TK+ S +
Sbjct: 509 SSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGI 568

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           + R +IVRDR R+HHF+ GKCSCND+W
Sbjct: 569 YNRLVIVRDRTRFHHFQGGKCSCNDYW 595



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 26/347 (7%)

Query: 33  TILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS 92
           T+  +L  +C  +  H +Q HA ++  GH +D  ++ +L+ C+AN    + + A K+F  
Sbjct: 124 TLAILLKPRC--ALAHARQLHANVVAEGHLRDALLATSLMACYANR--GDGDGARKLFGE 179

Query: 93  VHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADK 150
           +   +   WN ++  C  +      + L+ EM G DS  +P+  T   + +AC+   A  
Sbjct: 180 MPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALD 239

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
            G QV A+  ++G    + V++S I MY+  GCV+KA ++     +  V+ W+A+I G  
Sbjct: 240 FGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLA 299

Query: 211 KCG----DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT--- 263
             G     I   +E+ +S    +  ++  ++S  +  G  +E  + F+ M  +  +    
Sbjct: 300 ANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNV 359

Query: 264 --WSAIIDGYTKDGYYKEALE-VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
             +  I+D   + G   EA E V NEM   K+ P   +   +L AC   G +D G    +
Sbjct: 360 RHYGCIVDLMGRAGLLDEAYELVTNEM---KVAPDATIWRTLLGACRIHGHVDLG----E 412

Query: 321 HVKRNSICVDAVLG---TALVDMYAKCGRLDMAWKVFEDMKMKEVFT 364
            V  N I + A        L++ YA  G      +V + M+ K + T
Sbjct: 413 RVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQT 459


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/663 (32%), Positives = 336/663 (50%), Gaps = 66/663 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  I ++G     Y++  LV   A  +  +   A  +F+++   N+F WN ++ A     
Sbjct: 64  HQKITRAGLGSSAYLNNLLVLMLA--KHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRG 121

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHV-VKNGLCGDVHVK 171
            P   + L+++M   D  P   T+ T   ACS     + G ++HA +    G+   V + 
Sbjct: 122 HPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILD 178

Query: 172 SSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-------------------- 211
           ++   MYA  G ++ A+ + D     +V+ WNALI  Y +                    
Sbjct: 179 TAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGV 238

Query: 212 -------------CGDIEGAKELFKSTKD-------KNTGSYNAMISGFARFGRFEEARK 251
                        C D+   +++     +       ++ G  NA+++ +A+ G  E AR 
Sbjct: 239 RPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARD 298

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311
           +F +M  +D+++ + +I  + + G  KE+++VF EM  + +       + V+ AC+  GA
Sbjct: 299 IFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGA 358

Query: 312 LDQGIWIHDHV-----KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
           L+ G  IH  V      R     + V+ TALV MY KCG L+ A  VF+ M  K   +WN
Sbjct: 359 LEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWN 418

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AM+   A  G+ D+A         E +  D  +F  VL AC+H+GM++        M   
Sbjct: 419 AMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSD 478

Query: 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER 486
           + + P  E+Y C+VDLL R+G L +A+E+++SMP  P+A  W  LLG CR  G +E    
Sbjct: 479 FDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAAS 538

Query: 487 LGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI-KTNPGSSMIDVNGVI 531
             +    +EPQN               + D++ ++R  MKERG+ K  PG S+I+V+G +
Sbjct: 539 AAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRV 598

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           HEF  GD SHPQ+ +I   L  +  +LK  G+ P++  V+ D+  E+KE     HSEKLA
Sbjct: 599 HEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLA 658

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +AFG I+T  G  + V+KNLRVC DCH A KLISK+  R I VRD  R+H F++G CSC 
Sbjct: 659 VAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCG 718

Query: 652 DFW 654
           D+W
Sbjct: 719 DYW 721



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           IH  + R  +   A L   LV M AK G L  A  +F+ ++ K +F+WN +I   A  G 
Sbjct: 63  IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGH 122

Query: 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG 437
              A+ LF KM    + P  +TFA  LSAC+  G + RG +    ++   GI P V    
Sbjct: 123 PSTALHLFAKMD---VPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDT 179

Query: 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            I  +  + G L+ A+ V   +P + N   W AL+ A  + G
Sbjct: 180 AIFSMYAKCGDLSTAKSVFDRIPAK-NVVSWNALIAAYAQSG 220


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/654 (34%), Positives = 348/654 (53%), Gaps = 62/654 (9%)

Query: 60  GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVIS 119
           G   D +VS  L+  +   R + F  A  VF  +   +V  WN++L     H      I+
Sbjct: 130 GLHTDLFVSTALIDLYI--RCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA 187

Query: 120 LYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD---VHVKSSGI 175
              +M      +PN  T  ++    +   A  +G  +HA+ ++  L  +   V + ++ +
Sbjct: 188 HLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALL 247

Query: 176 QMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK----------- 223
            MYA C   V   R       ++DV  W+ALI G++ C  +  A  LFK           
Sbjct: 248 DMYAKCKQLVYACRVFHGMPVRNDV-TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 224 ------------STKDKNTGSY-----------------NAMISGFARFGRFEEARKLFN 254
                       S  D + G+                  N+++S +A+ G   EA   F+
Sbjct: 307 ATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           E+  KD I++ A++ G  ++G  +EA  VF +MQ   ++P    +  ++ AC+ L AL  
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQH 426

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G   H  V    + ++  +  +L+DMYAKCG++D++ +VF+ M  ++V +WN MI G  +
Sbjct: 427 GKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG   +A  LF  M+ +   PD +TF C+++AC+H+G++  G      M   YGI P +E
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRME 546

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLL R G L EA + I SMP++ +  VW ALLGACR H  ++ G+++ +I+ ++
Sbjct: 547 HYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKL 606

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
            P+                R D+ A++R + K +G K +PG S I++NG +H F  GD S
Sbjct: 607 GPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQS 666

Query: 541 HPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTD 600
           HP  ++IY  L  I+  +K  GY  ++S VL D++EEEKE A  YHSEKLAIAFG ++ +
Sbjct: 667 HPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLN 726

Query: 601 PGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
              TI V KNLRVC DCH+A K ++ V  R IIVRD  R+HHF+NG+CSC +FW
Sbjct: 727 EDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 203/467 (43%), Gaps = 49/467 (10%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
              LA +VF+ +  P+   +N+++RA          I LY  M+     PNK+T+P V K
Sbjct: 49  QLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLK 108

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           ACS     + G  +HAH    GL  D+ V ++ I +Y        AR +       DV+ 
Sbjct: 109 ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVA 168

Query: 202 WNALIDGYLKCG-------------DIEGAKE-----------------LFKST------ 225
           WNA++ GY   G             D  G +                  LF+ T      
Sbjct: 169 WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 226 -------KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
                   ++      A++  +A+  +   A ++F+ M  ++++TWSA+I G+       
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMT 288

Query: 279 EALEVFNEMQRDKI-KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337
           EA  +F +M  + +       ++  L  CASL  L  G  +H  + ++ I  D     +L
Sbjct: 289 EAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSL 348

Query: 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
           + MYAK G ++ A   F+++ +K+  ++ A++ G   +G+A++A  +F KMQ   M PD 
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDI 408

Query: 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
            T   ++ AC+H   +  G  +   +  + G+  E      ++D+  + G +  + +V  
Sbjct: 409 ATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSLIDMYAKCGKIDLSRQVFD 467

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504
            MP   +   W  ++     HG    G+    + L M+ Q    DDV
Sbjct: 468 KMPAR-DVVSWNTMIAGYGIHG---LGKEATTLFLGMKNQGFAPDDV 510



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 4/234 (1%)

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G+   AR++F+ +   D   ++A+I  Y+  G +  A++++  M R ++ P K+    VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
            AC++L  L  G  IH H     +  D  + TAL+D+Y +C R   A  VF  M M++V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 364 TWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            WNAM+ G A HG    AI     MQ    +RP+  T   +L   A  G + +G     Y
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 423 MQQ--MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
             +  +   + +V     ++D+  +   L  A  V   MP+  N   W AL+G 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVTWSALIGG 280



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 34/343 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA+I KSG   D   S +L+  +A +   N   A   F+ +   +   + ++L  C++
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLIN--EATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV 170
           + +      ++ +M   + +P+  T  ++  ACS   A + G   H  V+  GL  +  +
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 171 KSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT 230
            +S I MYA  G ++ +RQ+ D     DV+ WN +I GY   G  + A  LF   K++  
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 231 G----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEAL 281
                ++  +I+  +  G   E +  F+ M  K  I      +  ++D   + G   EA 
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAY 565

Query: 282 EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG------- 334
           +    M    +K    V   +L AC     +D G  +   +++        LG       
Sbjct: 566 QFIQSM---PLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK--------LGPEGTGNF 614

Query: 335 TALVDMYAKCGRLDMAWKV-----FEDMKMKEVFTWNAMIGGL 372
             L ++++  GR D A +V      +  K    ++W  + G L
Sbjct: 615 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404
           G+L +A +VF+ +   +   +NA+I   +  G    AI+L+  M R ++ P++ TF  VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 405 SACAHAGMID-RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
            AC  + ++D R  + +       G+  ++     ++DL  R      A  V + MPM  
Sbjct: 108 KAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR- 164

Query: 464 NAAVWEALLGACRKHG 479
           +   W A+L     HG
Sbjct: 165 DVVAWNAMLAGYANHG 180


>gi|357119982|ref|XP_003561711.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Brachypodium distachyon]
          Length = 555

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 314/565 (55%), Gaps = 41/565 (7%)

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSK-PNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           NS+LRA LE   P + +  Y  M+   +  P+  TY  + +AC         +Q+H+ + 
Sbjct: 20  NSILRASLEKGSPQKSLMDYGTMLNSTTFCPDYRTYGILLRACLKYSDIYAAMQIHSRLT 79

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K GL  + H+ +  +++Y  + C+ +AR++           W  L          E + +
Sbjct: 80  KVGLLRNQHIIAPLLRLYIDYDCMTEARELF----------WLML----------EWSTD 119

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
            F           N M++GF + G+ ++A ++F  M  KD ++W+++I G  +  + K+A
Sbjct: 120 PFHG---------NLMLTGFLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGAVRSSHLKDA 170

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           + +F+ +    + P  F  S VL+ACA  GAL  G+W+H  +    +  + +L +ALVDM
Sbjct: 171 MILFSRLVNSGLVPDGFSFSSVLSACARAGALFYGVWVHRLMAELGVEKNNILISALVDM 230

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCGR+D++ ++F  +K   V  WN MIG LA HG   D + LF +M+   + PD +TF
Sbjct: 231 YAKCGRIDVSVEIFNTVKRNHVPMWNTMIGSLAAHGLGQDVVVLFHRMEHAGVVPDGVTF 290

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
             +L+AC+H GM++   Q    M   Y I P+VEHYG +VD L RAG L EA  ++ SM 
Sbjct: 291 VALLTACSHCGMVEEARQYFEAMTTKYYITPKVEHYGAMVDTLSRAGLLDEAYNLVRSMV 350

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGK-----------ILLEMEPQNRRCDDVAKMRK 509
           ++P+A +W ALL ACR+H + + GE   +           +L  +     R  D   + K
Sbjct: 351 VKPDAVIWRALLSACRRHHQTKLGEITIEQMVCQGSGDYTLLSNIYSSINRWVDSENVWK 410

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
             K++ ++ N G S +++ G  HEF+ GD SHP   +IY +L  + +K K EGYSP++  
Sbjct: 411 ERKKKKVRKNKGLSWVELGGSTHEFKAGDRSHPDTDDIYRVLHGLSKKAKAEGYSPSTEL 470

Query: 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFK 629
           V+ D+  EE+E    +HSEKLA+A+  + T PG  I V KNL+ C DCH   K+ISKV  
Sbjct: 471 VMKDVSHEEREENLTFHSEKLAVAYSVLKTGPGTEIMVSKNLQTCGDCHEWIKIISKVLC 530

Query: 630 RDIIVRDRVRYHHFRNGKCSCNDFW 654
           R II+RDR R+H F +G CSC D+W
Sbjct: 531 RVIIMRDRARFHRFESGCCSCKDYW 555



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 75  HANSRFSNF------ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD 128
           H N   + F      + A ++F  +   +V  WNS++   +  +     + L+S +V   
Sbjct: 122 HGNLMLTGFLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGAVRSSHLKDAMILFSRLVNSG 181

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
             P+ F++ +V  AC+   A   GV VH  + + G+  +  + S+ + MYA  G ++ + 
Sbjct: 182 LVPDGFSFSSVLSACARAGALFYGVWVHRLMAELGVEKNNILISALVDMYAKCGRIDVSV 241

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT----GSYNAMISGFARFG 244
           +I +   ++ V  WN +I      G  +    LF   +         ++ A+++  +  G
Sbjct: 242 EIFNTVKRNHVPMWNTMIGSLAAHGLGQDVVVLFHRMEHAGVVPDGVTFVALLTACSHCG 301

Query: 245 RFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
             EEAR+ F  M  K  IT     + A++D  ++ G   EA   +N ++   +KP   + 
Sbjct: 302 MVEEARQYFEAMTTKYYITPKVEHYGAMVDTLSRAGLLDEA---YNLVRSMVVKPDAVIW 358

Query: 300 SCVLAAC 306
             +L+AC
Sbjct: 359 RALLSAC 365


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/634 (33%), Positives = 343/634 (54%), Gaps = 65/634 (10%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           AN+ F + E  L         +V +WN+++ A  ++  P   + ++  M+ +   P+  T
Sbjct: 182 ANALFGHLERHL---------DVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVT 232

Query: 136 YPTVFKACSITEADKEGVQV---HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILD 192
           + +VFKACS + + +   QV   H  + + GL  DV V ++ +  YA  G ++ AR+   
Sbjct: 233 FVSVFKACSSSPSLRAS-QVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFA 291

Query: 193 DGSKSDVICWNALIDGYLK-------------------------------CGDIEGAKEL 221
              + + + W ++I  + +                               C D+  A+ +
Sbjct: 292 AMPERNAVSWTSMIAAFAQIGHLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLV 351

Query: 222 FKSTKDKNTGSYNAMIS----GFARFGRFEEARKLFN--EMNDKDEITWSAIIDGYTKDG 275
               ++    +  A+++     +AR    E+A ++F+  E  + D    +A+I  Y +  
Sbjct: 352 EAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCR 411

Query: 276 YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLG 334
             +   +++       I P + +    L ACASL AL +G  IH  V  +  +  D  LG
Sbjct: 412 DRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLG 471

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
            A+V MY +CG L  A   F+ M  ++  +WNAM+   A HGR +D  +LF  M +E   
Sbjct: 472 NAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFD 531

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
            +R+ F  +LSACAHAG+++ G +  + M   +G+ P  EHYGC+VDLLGR G LA+A  
Sbjct: 532 AERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHG 591

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           ++ +MP+ P+AA W AL+GACR +G+ E G    + +LE+   +               R
Sbjct: 592 IVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNIYSAAGR 651

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
            +D A +RK+M + G++  PG S I++   +HEF   D SHPQ + IY  L++++  ++ 
Sbjct: 652 WEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIER 711

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY   + +VL D++EE+KE   ++HSEKLAIAFG ++T  G+T+RVIKNLRVC DCH+A
Sbjct: 712 AGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNA 771

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +K ISKVF R+I+VRD  R+HHF++G CSC D+W
Sbjct: 772 SKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 190/467 (40%), Gaps = 57/467 (12%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           +D Y++ +LV  +   R  + E A+ VF+ +   ++ +W  ++ A +        I+L+ 
Sbjct: 60  RDGYLASSLVYMYL--RCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFH 117

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG 182
            ++      +   + +V  ACS  E    G  +H   V+ GL     V S+ + MY   G
Sbjct: 118 RILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCG 177

Query: 183 CVNKARQILDDGSKS-DVICWNALIDGYLKCGDIEGAKELF------------------- 222
            +  A  +     +  DV+ WNA+I    + G    A E+F                   
Sbjct: 178 SLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVF 237

Query: 223 ------------------KSTKDKNTGS----YNAMISGFARFGRFEEARKLFNEMNDKD 260
                                 +   GS      A+++ +AR G  + AR+ F  M +++
Sbjct: 238 KACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERN 297

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD 320
            ++W+++I  + + G+   A+E F+ M  + + P +  L   L  C     L     +  
Sbjct: 298 AVSWTSMIAAFAQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGCED---LHTARLVEA 353

Query: 321 HVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI--GGLAMHGRA 378
             +   +  D  + T LV  YA+C   + A +VF     +E   W+A +    +A++ + 
Sbjct: 354 IAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVF---SAREEGEWDAALVTAMIAVYAQC 410

Query: 379 DD---AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
            D     +L+       + PDRI +   L ACA    +  G Q    +     +D +V  
Sbjct: 411 RDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTL 470

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
              IV + G+ G L +A +    MP     + W A+L A  +HG VE
Sbjct: 471 GNAIVSMYGQCGSLRDARDAFDGMPARDEIS-WNAMLSASAQHGRVE 516



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 144/300 (48%), Gaps = 16/300 (5%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           ++++  + R G  E A  +F+++  K  + W+ +I  Y   G+   A+ +F+ + ++ I 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
               V   VL+AC+S   L  G  IH       + +  ++ +ALV MY +CG L  A  +
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANAL 185

Query: 354 FEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
           F  + +  +V  WNAMI   + +G   +A+E+F++M +  + PD +TF  V  AC+ +  
Sbjct: 186 FGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPS 245

Query: 413 IDRGLQALTYMQQM--YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
           + R  Q   +   +   G+  +V     +V+   R G +  A E  ++MP E NA  W +
Sbjct: 246 L-RASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMP-ERNAVSWTS 303

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRR--------CDDVAKMR---KLMKERGIKTN 519
           ++ A  + G +   E    +LLE     R         C+D+   R    + +E G+ T+
Sbjct: 304 MIAAFAQIGHLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATD 363


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 320/579 (55%), Gaps = 59/579 (10%)

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           ++   L +F   +  + F  N++LR  L H  P  + S +         P+ FT+     
Sbjct: 94  HYAYPLALFRRANSTSAFASNNLLR-VLPHPLPLTLFSRFRR-----RNPHSFTFLLASI 147

Query: 142 ACSITEADKE-------GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           +  +  A          G  VHA  VK G  GD+ V+                       
Sbjct: 148 SNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVR----------------------- 184

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGRFEEARKLF 253
                   NAL+  Y   GD+   + +F    + ++  ++N +++G+ R G    AR++F
Sbjct: 185 --------NALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVF 236

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           +EM  +DEI+WS ++ GY K+   + AL VF  M    ++P +  +   L+A A LG L+
Sbjct: 237 DEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLE 296

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G ++H+ V+R+ + V   +G ALVDMYAKCG + +A +VF+ M+ ++VF WNAMI GLA
Sbjct: 297 HGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLA 356

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
            HG   DA+ELF +   E + P  +TF  VL+ C+ +G++  G +    + + Y I+PE+
Sbjct: 357 AHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEM 416

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHYGC+VDLLGRAG + EA E+I  M + P+  +W  +L +C+ HG V+ G  +G  L+E
Sbjct: 417 EHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIE 476

Query: 494 MEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           ++P +               + D+V ++RKLM  RG   + G S+++ +G +H+F  GD 
Sbjct: 477 LDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDT 536

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            H    +IY  L  I ++L   GY P+ S VL DI EEEK  A K HSE+LAIA+GFI  
Sbjct: 537 YHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVL 596

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
           + G+ IR++KNLRVC DCH  +K+++ VF+R+IIVRD +
Sbjct: 597 EAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGI 635


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 339/630 (53%), Gaps = 29/630 (4%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H ++ + G   D YVS  LV  +   +  + E A  VF +    NVF W  ++  C 
Sbjct: 54  RRIHQLMRRVGLGSDVYVSNHLVMMYG--KCGSLEEARLVFEATPAKNVFSWTILITVCA 111

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI-TEADKEGVQVHAHVVKNGLCGDV 168
           +H      ++L+ EM+    +P+  ++     ACS   E    G  +HA + + G    V
Sbjct: 112 QHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAV 171

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG-DIEGAKEL------ 221
              +S + MY+  G + ++ +  +  ++ + + WNA+I  + +    +E  + L      
Sbjct: 172 VATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLE 231

Query: 222 -FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
             ++  D   G+   +++ +A+     +A   F ++ + + ITW+ +I  Y +   +KEA
Sbjct: 232 GIRACSDVVVGT--TLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEA 289

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD-AVLGTALVD 339
           +E+F  M    ++  +     +L AC    AL+ G  IH  V+ + +  + A L   +++
Sbjct: 290 MELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILN 349

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399
           MY KCG L  A  +F+ M   +V  WN MI     HG   +A+  +  MQ E + PD  T
Sbjct: 350 MYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYT 409

Query: 400 FACVLSA-CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           +  V+ A CA+AG+ +        MQQ +G+ P   HYGC+V+ LG+AG L++AE +I  
Sbjct: 410 YVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQC 469

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRC--------------DDV 504
           MP EP+   W + L  CR HG+++ G+   K  + ++P+                   + 
Sbjct: 470 MPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEA 529

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
           +++RKLM +RGI+ N G S+I +   ++EF  GD S+P+ KEI+  LK++ +++K  GY 
Sbjct: 530 SRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKSAGYD 589

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P+ + V  D++  +KE     HSE+LAIAFG I+T PG  +R++KNLRVC DCH+ TKL 
Sbjct: 590 PDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTPLRIMKNLRVCGDCHTMTKLT 649

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           SK+ +R+IIVRD  R+HHF+NG CSC DFW
Sbjct: 650 SKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 5/204 (2%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE 361
           V+ +CA LGAL +G  IH  ++R  +  D  +   LV MY KCG L+ A  VFE    K 
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
           VF+W  +I   A HGR+ +A+ LF++M ++ ++P  ++F   ++AC+         +AL 
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 422 YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE- 480
            + + YG    V     +V +  + G L E+     SM  EPNA  W A++ A  +H   
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESM-TEPNAVSWNAMIAAFAEHRRG 218

Query: 481 VEFGERLGKILLEMEPQNRRCDDV 504
           +E    L K+ LE     R C DV
Sbjct: 219 LEALRTLQKMFLE---GIRACSDV 239



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 164/368 (44%), Gaps = 20/368 (5%)

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V ++C+   A  EG ++H  + + GL  DV+V +  + MY   G + +AR + +     +
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 199 VICWNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARK--- 251
           V  W  LI    + G  + A  LF    K     ++ S+ A I+  +    F  A +   
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 252 -LFNEMNDKDE-ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            L      +D  +  ++++  Y+K G  +E++  F  M     +P     + ++AA A  
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESM----TEPNAVSWNAMIAAFAEH 215

Query: 310 GALDQGIWIHDHVKRNSI--CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
               + +     +    I  C D V+GT LV+MYAKC  L  A   F  ++   + TWN 
Sbjct: 216 RRGLEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNV 275

Query: 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID--RGLQALTYMQQ 425
           +I     H    +A+ELF +M    +  D +TF  +L AC     ++  R + A      
Sbjct: 276 LISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHP 335

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
           +      +E+   I+++ G+ G L +AE +  SM  +P+   W  ++ A  +HG      
Sbjct: 336 LASNHAPLENV--ILNMYGKCGSLQDAEAMFKSMS-QPDVIAWNTMIAAYGQHGHTSEAL 392

Query: 486 RLGKILLE 493
           R  +++ E
Sbjct: 393 RFYELMQE 400


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 344/643 (53%), Gaps = 53/643 (8%)

Query: 63  QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYS 122
           ++ ++   LV+  A  R  + + A+  F+ + + N + +  ++ A  E++   + + L+ 
Sbjct: 15  KETFLGNCLVR--AYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFK 72

Query: 123 EMVGVDSKPNKFTYPTVFKACSITEAD--KEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180
           + +  + + N+ TY TV K+C+    D  ++G ++H H +  G   D+ V++S I MYA 
Sbjct: 73  KSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAK 132

Query: 181 FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---------- 230
            G    A  + +     ++I + ++I  Y        A EL+K    +            
Sbjct: 133 CGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAA 192

Query: 231 -----------------GSY--------NAMISGFARFGRFEEARKLFNEMNDKDEITWS 265
                            G++        NA++  + RFGR   A+ +F+ +  KD  +++
Sbjct: 193 LAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYN 252

Query: 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325
            +I  + K     +A+ ++ EM+   ++P  +  + VL AC+ LGAL +G  IH  VK  
Sbjct: 253 NMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGG 312

Query: 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELF 385
               D    TALV+MYAKCG    A  VF D  +K VFTW +++   +  G++   +E +
Sbjct: 313 DQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAY 372

Query: 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR 445
            +M  E + PD +TF  + +AC+H+G+ D GL     M++ + I P   HY C++DLLGR
Sbjct: 373 QRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGR 432

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499
            G L EAEE++ +MP  P+   W  LL AC+ +G+++ G R  K + E+ P +       
Sbjct: 433 VGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLM 492

Query: 500 --------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLML 551
                   +  DVA+++K++K+RG+   PG SMI+    IHEF  GD +HP  +EI   L
Sbjct: 493 GNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARL 552

Query: 552 KKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNL 611
           +++ E+L   GY P++ +VL D++EE K     +HSE++A+  G + +D GAT+ ++KNL
Sbjct: 553 QEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNL 612

Query: 612 RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           R+C DCHS  KL+SK+  R ++VRD  R+H F+ G CSC D+W
Sbjct: 613 RICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
           ++K T   N ++  + R    ++A   F+E+ +K+E +++ ++  Y ++  +K+AL++F 
Sbjct: 13  QEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFK 72

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGA--LDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343
           +   ++++  +     VL +CA LG   L+ G  IH H        D V+  +L+ MYAK
Sbjct: 73  KSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAK 132

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403
           CG    A  VFE M+ K + ++ +MI       +  +A EL+ KM  E + PD   +A  
Sbjct: 133 CGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAA 192

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           L+ C     I  G      +       P   +   +V + GR G +A A+ V   +  + 
Sbjct: 193 LAVCP---TIREGEAIHVKLGNHERRTPVCSN--ALVGMYGRFGRIASAKWVFDGIRYK- 246

Query: 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           + A +  ++    K+ +   G +   + +EME +N
Sbjct: 247 DLASYNNMIAVFAKYDD---GSKAISLYIEMEGRN 278


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/579 (34%), Positives = 310/579 (53%), Gaps = 54/579 (9%)

Query: 129 SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188
           ++P+  T+     AC+     + G  V       G   DV V SS + +YA +G +  A 
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAV 163

Query: 189 QILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN---------------TGSY 233
           ++ D   + D + W+ ++ G++  G    A ++++  ++                 T + 
Sbjct: 164 KVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 234 N------------------------AMISGFARFGRFEEARKLFNEMNDKDEITWSAIID 269
           N                        +++  +A+ G  + A ++F  M  +++++WSA+I 
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329
           G+ ++G   EAL +F  MQ   I+P    L   L AC+++G L  G  +H  + R     
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDF 342

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           + +LGTA +DMY+KCG L  A  +F  +  +++  WNAMI     HGR  DA+ LF +M 
Sbjct: 343 NCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN 402

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
              MRPD  TFA +LSA +H+G+++ G      M   + I P  +HY C+VDLL R+G +
Sbjct: 403 ETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLV 462

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN----------- 498
            EA ++++SM  EP  A+W ALL  C  + ++E GE +   +LE++P +           
Sbjct: 463 EEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 499 ---RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKII 555
              ++ D V ++RKLMK+ G K  PG S I++ G  H F   D SHPQ +EI   + K+ 
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLD 582

Query: 556 EKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCE 615
            +++  GY P +  V  D++EE KE    YHSEKLAIAFG +NT PG  + +IKNLRVC 
Sbjct: 583 LEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCG 642

Query: 616 DCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           DCH A K ISK+  R+I+VRD  R+HHF++G CSC D+W
Sbjct: 643 DCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 162/321 (50%), Gaps = 20/321 (6%)

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRF 246
           L   ++ D   +   +    + GD+ G + +    F +    +    ++++  +AR+G  
Sbjct: 100 LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAM 159

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            +A K+F+ M  +D +TWS ++ G+   G   +A++++  M+ D +K  + V+  V+ AC
Sbjct: 160 GDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQAC 219

Query: 307 ASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN 366
            +   +  G  +H H+ R+ + +D V  T+LVDMYAK G LD+A +VF  M  +   +W+
Sbjct: 220 TAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWS 279

Query: 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM 426
           AMI G A +G++D+A+ LF  MQ   ++PD       L AC++ G +  G       + +
Sbjct: 280 AMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG-------RSV 332

Query: 427 YGIDPEVEHYGCI-----VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +G       + CI     +D+  + G LA A +++ +M  + +  +W A++  C  HG  
Sbjct: 333 HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGR- 390

Query: 482 EFGERLGKILLEMEPQNRRCD 502
             G+    +  EM     R D
Sbjct: 391 --GQDALTLFQEMNETGMRPD 409



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 162/353 (45%), Gaps = 42/353 (11%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           +G+  D +V  +L+  H  +R+     A+KVF+ + + +   W++++   +   +P   I
Sbjct: 137 AGYKDDVFVCSSLL--HLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178
            +Y  M     K ++     V +AC+     + G  VH H++++G+  DV   +S + MY
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSY- 233
           A  G ++ A ++       + + W+A+I G+ + G  + A  LF++ +      ++G+  
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314

Query: 234 NAMIS----GFARFGR-----------------------------FEEARKLFNEMNDKD 260
           +A+++    GF + GR                                A+ LFN ++D+D
Sbjct: 315 SALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD 374

Query: 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG-IWIH 319
            I W+A+I      G  ++AL +F EM    ++P     + +L+A +  G +++G +W  
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFG 434

Query: 320 DHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGG 371
             V    I         LVD+ A+ G ++ A  +   MK +  V  W A++ G
Sbjct: 435 CMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSG 487


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/662 (32%), Positives = 343/662 (51%), Gaps = 60/662 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K+ H+ I+++G+  D  V   +V+ +   +  + E A  VF+S+  PNVF W  ++ A  
Sbjct: 137 KRVHSHIMQTGYEGDRMVMNLVVEMYG--KCGDVEQAGNVFDSIQDPNVFSWTIIIAAYA 194

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN-GLCGDV 168
           ++     V+ L S M     KP+ +T+ TV  AC+   A +E   +HA  + + GL  D 
Sbjct: 195 QNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDA 254

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG------------DIE 216
            V ++ I +Y   G + +A  +       D++ W+++I  + + G            D+E
Sbjct: 255 AVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLE 314

Query: 217 GAK----------ELFKSTKDKNTGS-----------------YNAMISGFARFGRFEEA 249
           G +          E   S K    G                   +A++  +  +G  E A
Sbjct: 315 GVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETA 374

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
           R +F    ++D ++WS++I GY+++     AL +F EM+ D ++P        + ACA +
Sbjct: 375 RSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGV 434

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
           GAL +G  +H+ V+   +  D  + TALV++Y KCGRL+ A  VF  MK K + TW ++ 
Sbjct: 435 GALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIA 494

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                +G    +++L   M+ + M+PD I F  +L +C +AG + +GL     M Q +GI
Sbjct: 495 MAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGI 554

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
            P VEH GC+VD+LGRAG L  AE++I++M  E + A W  LL AC+ H +     R  +
Sbjct: 555 APAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAE 613

Query: 490 ILLEMEPQNRR---------C-----DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            + ++EP+N           C     +   + R+ M  RG++   G S I++   +HEF 
Sbjct: 614 KIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFV 673

Query: 536 TGDGSHPQ--VKEIYLMLKKIIEKLKMEGYSPNSSQV-LFDIDEEEKETAPKYHSEKLAI 592
                 P   V EI+  L+K+  +++  GY P+++ V L D++E  KE A  YHSE LA+
Sbjct: 674 AASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLAL 733

Query: 593 AFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652
             G I+T  G  +R+ KNLR+C DCH ATK +SK+  R I VRD  R+HHF NG CSC D
Sbjct: 734 GLGIISTPAGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGD 793

Query: 653 FW 654
           +W
Sbjct: 794 YW 795



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 230/499 (46%), Gaps = 49/499 (9%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVK---CHANSRFSNFELALKVFNSVHKPNVFVWNSVLR 106
           K+ H ++++    QD     +L++        R    +LAL VF+ +   NV  W S++ 
Sbjct: 30  KRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLIS 89

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD-KEGVQVHAHVVKNGLC 165
           A          + L+ +M+     P++ T+ ++    S  E +  EG +VH+H+++ G  
Sbjct: 90  AFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYE 149

Query: 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI------------------- 206
           GD  V +  ++MY   G V +A  + D     +V  W  +I                   
Sbjct: 150 GDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRM 209

Query: 207 -------DGY---------LKCGDIEGAKELFKST-----KDKNTGSYNAMISGFARFGR 245
                  DGY            G +E AK L  +T      D++     A+I+ + + G 
Sbjct: 210 NQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGA 269

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            EEA  +F ++++KD ++WS++I  + + G  K A+++   M  + ++P       VL A
Sbjct: 270 LEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEA 329

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
             SL A   G  IH  + +     D  L +ALV MY   G ++ A  +FE  + ++V +W
Sbjct: 330 VTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSW 389

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           ++MI G + +     A+ LF +M+ + ++P+ +TF   + ACA  G + RG Q L    +
Sbjct: 390 SSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQ-LHERVR 448

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
             G+D +V     +V+L G+ G L EAE V   M  + N   W ++  A   +G+   G 
Sbjct: 449 CLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMA---YGQNGHGS 504

Query: 486 RLGKILLEMEPQNRRCDDV 504
           R  K+L  ME Q  + D +
Sbjct: 505 RSLKLLHGMELQGMKPDGI 523



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 181/410 (44%), Gaps = 63/410 (15%)

Query: 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS-----GIQMYACFGCVNKARQILD 192
            +  ACS   A  EG +VH  V++  L  D     S      IQMY   GC + A  + D
Sbjct: 15  AILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFD 74

Query: 193 DGSKSDVICWNALIDGYLKCGDIEGAKELFK---------------------STKDKN-- 229
                +V+ W +LI  +   G    A  LF+                     S +++N  
Sbjct: 75  RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLD 134

Query: 230 -----------TG------SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYT 272
                      TG        N ++  + + G  E+A  +F+ + D +  +W+ II  Y 
Sbjct: 135 EGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYA 194

Query: 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDH-VKRNSICVDA 331
           ++G+  E L + + M +  +KP  +  + VL AC ++GAL++   +H   +    +  DA
Sbjct: 195 QNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDA 254

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
            +GTAL+++Y KCG L+ A+ VF  +  K++ +W++MI   A  G+A  AI+L   M  E
Sbjct: 255 AVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLE 314

Query: 392 KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY------GIDPEVEHYGCIVDLLGR 445
            +RP+ +TF  VL A          L+A  Y ++++      G   +V     +V +   
Sbjct: 315 GVRPNNVTFVNVLEAVT-------SLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCN 367

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495
            G++  A  +  S   E +   W +++     + + E   R   +  EME
Sbjct: 368 WGWVETARSIFES-SRERDVVSWSSMIAG---YSQNESPARALSLFREME 413



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 151/355 (42%), Gaps = 68/355 (19%)

Query: 45  SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           ++Q+ K+ HA I+++G+  D  ++  LVK + N  +   E A  +F S  + +V  W+S+
Sbjct: 335 AFQYGKEIHARIVQAGYSDDVCLTSALVKMYCN--WGWVETARSIFESSRERDVVSWSSM 392

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +    ++  P R +SL+ EM     +PN  T+ +   AC+   A + G Q+H  V   GL
Sbjct: 393 IAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGL 452

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS 224
             DV V ++ + +Y                                KCG +E A+ +F  
Sbjct: 453 DKDVPVATALVNLYG-------------------------------KCGRLEEAEAVFLG 481

Query: 225 TKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVF 284
            K KN                                +TW++I   Y ++G+   +L++ 
Sbjct: 482 MKKKNL-------------------------------LTWTSIAMAYGQNGHGSRSLKLL 510

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-LVDMYAK 343
           + M+   +KP   V   +L +C   G + +G+  ++ + ++     AV     +VD+  +
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGR 570

Query: 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH---GRADDAIELFFKMQREKMRP 395
            G+L+ A ++   MK +    W  ++     H    RA  A E  F+++ +   P
Sbjct: 571 AGKLEAAEQLINTMKFESSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATP 625



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD-----AVLGTALVDMY 341
           M+  +I+      + +L AC+ L AL +G  +H  V R S+  D     ++L   ++ MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
            +CG  D+A  VF+ MK + V  W ++I      G   DA+ LF KM    + PDRITF 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 402 CVLSA-CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
            +L         +D G +  +++ Q  G + +      +V++ G+ G + +A  V  S+ 
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQT-GYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSI- 178

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTN 519
            +PN   W                     I++    QN  C +V ++   M + G+K +
Sbjct: 179 QDPNVFSW--------------------TIIIAAYAQNGHCMEVLRLLSRMNQAGVKPD 217


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 336/628 (53%), Gaps = 59/628 (9%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A +VF  +   +   WNS++    ++      +  Y  M   D  P  FT  +   +C+ 
Sbjct: 368 ARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCAS 427

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +  K G Q+H   +K G+  +V V ++ + +YA  G +N+ R+I     + D + WN++
Sbjct: 428 LKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSI 487

Query: 206 IDGYLKC-------------GDIEGAK-------------------EL--------FKST 225
           I    +                  G K                   EL         K+ 
Sbjct: 488 IGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNN 547

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVF 284
                 + NA+I+ + + G  +   K+F+ M ++ D +TW+++I GY  +    +AL++ 
Sbjct: 548 IADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLV 607

Query: 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344
             M +   +   F+ + VL+A AS+  L++G+ +H    R  +  D V+G+ALVDMY+KC
Sbjct: 608 WFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC 667

Query: 345 GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACV 403
           GRLD A + F  M ++  ++WN+MI G A HG+ ++A++LF  M+ + +  PD +TF  V
Sbjct: 668 GRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGV 727

Query: 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463
           LSAC+HAG+++ G +    M   YG+ P +EH+ C+ D+LGRAG L + E+ I  MPM+P
Sbjct: 728 LSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKP 787

Query: 464 NAAVWEALLGA-CRKHG-EVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507
           N  +W  +LGA CR +G + E G++  ++L ++EP+N               R +D+ K 
Sbjct: 788 NVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKA 847

Query: 508 RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNS 567
           RK MK+  +K   G S + +   +H F  GD SHP    IY  LK++  K++  GY P +
Sbjct: 848 RKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQT 907

Query: 568 SQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT-IRVIKNLRVCEDCHSATKLISK 626
              L+D+++E KE    YHSEKLA+AF           IR++KNLRVC DCHSA K ISK
Sbjct: 908 GFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISK 967

Query: 627 VFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  R II+RD  R+HHF++G CSC+DFW
Sbjct: 968 IEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 211/470 (44%), Gaps = 49/470 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q H ++ K  +  D  VS  L+  +      +   AL  F  +   N   WNS++    
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKC-IGSVGYALCAFGDIEVKNSVSWNSIISVYS 182

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPT-VFKACSITEADKEGV-QVHAHVVKNGLCGD 167
           +  +      ++S M    S+P ++T+ + V  ACS+TE D   + Q+   + K+GL  D
Sbjct: 183 QAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTD 242

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF---KS 224
           + V S  +  +A  G ++ AR++ +     + +  N L+ G ++    E A +LF    S
Sbjct: 243 LFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNS 302

Query: 225 TKDKNTGSY-----------------------------------------NAMISGFARF 243
             D +  SY                                         N +++ +A+ 
Sbjct: 303 MIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC 362

Query: 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303
           G   +AR++F  M DKD ++W+++I G  ++G + EA+E +  M+R  I P  F L   L
Sbjct: 363 GSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSL 422

Query: 304 AACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF 363
           ++CASL     G  IH    +  I ++  +  AL+ +YA+ G L+   K+F  M   +  
Sbjct: 423 SSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQV 482

Query: 364 TWNAMIGGLAMHGRA-DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
           +WN++IG LA   R+  +A+  F   QR   + +RITF+ VLSA +     + G Q +  
Sbjct: 483 SWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ-IHG 541

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +     I  E      ++   G+ G +   E++ S M    +   W +++
Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMI 591



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 222/513 (43%), Gaps = 53/513 (10%)

Query: 19  ISATNIPTSEFSQKTILDILNTKCHTS---WQHLKQAHAVILKSGHFQDHYVSGTLVKCH 75
            S+     S  ++ T   ++ T C  +    + L+Q    I KSG   D +V   LV   
Sbjct: 194 FSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAF 253

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKF 134
           A S   +   A KVFN +   N    N ++   +          L+ +M   +D  P  +
Sbjct: 254 AKS--GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESY 311

Query: 135 T-YPTVFKACSITE--ADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQI 190
               + F   S+ E    K+G +VH HV+  GL    V + +  + MYA  G +  AR++
Sbjct: 312 VILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRV 371

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK------------------------ 226
               +  D + WN++I G  + G    A E +KS +                        
Sbjct: 372 FYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWA 431

Query: 227 ---------------DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271
                          D N    NA+++ +A  G   E RK+F+ M + D+++W++II   
Sbjct: 432 KLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGAL 491

Query: 272 TK-DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
            + +    EA+  F   QR   K  +   S VL+A +SL   + G  IH    +N+I  +
Sbjct: 492 ARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADE 551

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDM-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ 389
           A    AL+  Y KCG +D   K+F  M + ++  TWN+MI G   +     A++L + M 
Sbjct: 552 ATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFML 611

Query: 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449
           +   R D   +A VLSA A    ++RG++      +   ++ +V     +VD+  + G L
Sbjct: 612 QTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVVVGSALVDMYSKCGRL 670

Query: 450 AEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
             A    ++MP+  N+  W +++    +HG+ E
Sbjct: 671 DYALRFFNTMPVR-NSYSWNSMISGYARHGQGE 702



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 203/474 (42%), Gaps = 59/474 (12%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+ + K+   +D Y+   L+  +  +   +   A KVF+ +   N   W  ++     + 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLET--GDSVSARKVFDEMPLRNCVSWACIVSGYSRNG 81

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV----QVHAHVVKNGLCGDV 168
           E    +    +MV      N++ + +V +AC   E    G+    Q+H  + K     D 
Sbjct: 82  EHKEALVFLRDMVKEGIFSNQYAFVSVLRACQ--EIGSVGILFGRQIHGLMFKLSYAVDA 139

Query: 169 HVKSSGIQMY-ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK- 226
            V +  I MY  C G V  A     D    + + WN++I  Y + GD   A  +F S + 
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199

Query: 227 ------DKNTGSY----------------------------------NAMISGFARFGRF 246
                 +   GS                                   + ++S FA+ G  
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSL 259

Query: 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRKFVLSCVLAA 305
             ARK+FN+M  ++ +T + ++ G  +  + +EA ++F +M     + P  +V+      
Sbjct: 260 SYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFP 319

Query: 306 CASLG---ALDQGIWIHDHVKRNSICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMK 360
             SL     L +G  +H HV    + VD +  +G  LV+MYAKCG +  A +VF  M  K
Sbjct: 320 EYSLAEEVGLKKGREVHGHVITTGL-VDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDK 378

Query: 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420
           +  +WN+MI GL  +G   +A+E +  M+R  + P   T    LS+CA       G Q  
Sbjct: 379 DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIH 438

Query: 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
               ++ GID  V     ++ L    GYL E  ++ SSMP E +   W +++GA
Sbjct: 439 GESLKL-GIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 8/278 (2%)

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           L+K+  DK+    N +I+ +   G    ARK+F+EM  ++ ++W+ I+ GY+++G +KEA
Sbjct: 27  LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEA 86

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ--GIWIHDHVKRNSICVDAVLGTALV 338
           L    +M ++ I   ++    VL AC  +G++    G  IH  + + S  VDAV+   L+
Sbjct: 87  LVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLI 146

Query: 339 DMYAKC-GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397
            MY KC G +  A   F D+++K   +WN++I   +  G    A  +F  MQ +  RP  
Sbjct: 147 SMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTE 206

Query: 398 ITF-ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            TF + V +AC+      R L+ +    Q  G+  ++     +V    ++G L+ A +V 
Sbjct: 207 YTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVF 266

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           + M       +   ++G  R+    ++GE   K+ ++M
Sbjct: 267 NQMETRNAVTLNGLMVGLVRQ----KWGEEATKLFMDM 300



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 42/273 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV--HKPNVFVWNSVLRA 107
           KQ H + LK+    +      L+ C+   +    +   K+F+ +   + NV  WNS++  
Sbjct: 537 KQIHGLALKNNIADEATTENALIACYG--KCGEMDGCEKIFSRMAERRDNV-TWNSMISG 593

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
            + +    + + L   M+    + + F Y TV  A +     + G++VHA  V+      
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR------ 647

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                      AC               +SDV+  +AL+D Y KCG ++ A   F +   
Sbjct: 648 -----------ACL--------------ESDVVVGSALVDMYSKCGRLDYALRFFNTMPV 682

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEM-----NDKDEITWSAIIDGYTKDGYYKEALE 282
           +N+ S+N+MISG+AR G+ EEA KLF  M        D +T+  ++   +  G  +E  +
Sbjct: 683 RNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFK 742

Query: 283 VFNEMQRD-KIKPRKFVLSCVLAACASLGALDQ 314
            F  M     + PR    SC+       G LD+
Sbjct: 743 HFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
           P  FV SCV       G      + H  + +N +  D  L   L++ Y + G    A KV
Sbjct: 6   PLSFVQSCV-------GHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKV 58

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG-- 411
           F++M ++   +W  ++ G + +G   +A+     M +E +  ++  F  VL AC   G  
Sbjct: 59  FDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118

Query: 412 --MIDRGLQALTYMQQMYGIDPEVE------HYGCIVDLLGRAGY 448
             +  R +  L + +  Y +D  V       ++ CI    G  GY
Sbjct: 119 GILFGRQIHGLMF-KLSYAVDAVVSNVLISMYWKCI----GSVGY 158



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 102/244 (41%), Gaps = 37/244 (15%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           + HA  +++    D  V   LV  +  S+    + AL+ FN++   N + WNS++     
Sbjct: 640 EVHACSVRACLESDVVVGSALVDMY--SKCGRLDYALRFFNTMPVRNSYSWNSMISGYAR 697

Query: 111 HNEPWRVISLYSEM-VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL----- 164
           H +    + L+  M +   + P+  T+  V  ACS           HA +++ G      
Sbjct: 698 HGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACS-----------HAGLLEEGFKHFES 746

Query: 165 CGDVHVKSSGIQMYACFG-CVNKARQI--LDD-----GSKSDVICWNALIDGYLKCGDIE 216
             D +  +  I+ ++C    + +A ++  L+D       K +V+ W  ++    +    +
Sbjct: 747 MSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRK 806

Query: 217 G-----AKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKD-----EITWSA 266
                 A E+    + +N  +Y  + + +A  GR+E+  K   +M D D       +W  
Sbjct: 807 AELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVT 866

Query: 267 IIDG 270
           + DG
Sbjct: 867 MKDG 870


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 316/578 (54%), Gaps = 54/578 (9%)

Query: 131 PNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190
           PN+FT+ ++  A + T     G Q+H+ + K+G   ++ V ++ + MYA    ++ A ++
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKS-----TKDKNTGSYNAMIS-----GF 240
            D   + +++ WN++I G+      + A  +FK      T   N  S ++++S     G 
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 241 ARFGR------------------------------FEEARKLFNEMNDKDEITWSAIIDG 270
             FGR                              F+E  KLF  + D+D +TW+ ++ G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           + ++  ++EA   F  M+R+ I P +   S VL + ASL AL QG  IHD + +     +
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +  +L+ MYAKCG L  A++VFE ++   V +W AMI    +HG A+  IELF  M  
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 391 EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450
           E + P  +TF CVLSAC+H G ++ GL     M++++ ++P  EHY C+VDLLGRAG+L 
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 451 EAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----------- 499
           EA+  I SMPM+P  +VW ALLGACRK+G ++ G    + L EMEP N            
Sbjct: 368 EAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCT 427

Query: 500 ---RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIE 556
              R ++  ++R+LM   G++  PG S IDV  +   F   D SH    EIY ML+K+ +
Sbjct: 428 RSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEK 487

Query: 557 KLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCED 616
            +K +GY   +  V   ++E E+E    YHSEKLA+AFG +     + IR+ KNLR C  
Sbjct: 488 LVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGH 547

Query: 617 CHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           CH+  KL SK+F R+IIVRD  R+H F +G CSC D+W
Sbjct: 548 CHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 21/212 (9%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  I+K G+ ++  + G+L+  +A  +  +   A +VF  +   NV  W +++ A   H 
Sbjct: 236 HDQIIKLGYVKNMCILGSLITMYA--KCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHG 293

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
              +VI L+  M+    +P+  T+  V  ACS T   +EG+  H + +K      +H  +
Sbjct: 294 CANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL-AHFNSMKK-----IHDMN 347

Query: 173 SGIQMYACF-------GCVNKARQILDDGS-KSDVICWNALIDGYLKCGDI----EGAKE 220
            G + YAC        G +++A++ ++    K     W AL+    K G++    E A+ 
Sbjct: 348 PGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAER 407

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKL 252
           LF+  +  N G+Y  + +   R GR EEA ++
Sbjct: 408 LFE-MEPYNPGNYVLLANMCTRSGRLEEANEV 438


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/624 (34%), Positives = 327/624 (52%), Gaps = 82/624 (13%)

Query: 49  LKQAHAVILKSGHFQDH-YVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           LK+  A ++ +G  Q+H  +S +++   A S   +   A  +F  +  P    WNS++R 
Sbjct: 25  LKKIQAHVIVNG-LQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRG 83

Query: 108 CLEHNEPWRVISLYSEMV-GVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             +   P + I  Y+ M+    S P+ FT+    KAC   +A K+             C 
Sbjct: 84  FAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKK-------------CE 130

Query: 167 DVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226
           +VH                    I+  G + DV+    +  G ++C              
Sbjct: 131 EVH------------------GSIIRTGYERDVV----VCTGLVRC-------------- 154

Query: 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
                        + R G  E AR +F+ M ++D + W+A+I  Y++ GY++EAL V++ 
Sbjct: 155 -------------YGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDY 201

Query: 287 MQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346
           M+ + +    F L  +L++C+ +GAL+ G+ +H       +  +  +G AL+DMYAKCG 
Sbjct: 202 MRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGS 261

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406
           LD A +VF  M  ++ FTWN+MI G  +HG  D+AI  F +M    +RP+ I F  +L  
Sbjct: 262 LDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCG 320

Query: 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA 466
           C+H G+++ G++    M   + + P ++HYGCIVD+ GRAG L +A E+I   P + +  
Sbjct: 321 CSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPV 380

Query: 467 VWEALLGACRKHGEVEFGE-------RLGKI-------LLEMEPQNRRCDDVAKMRKLMK 512
           +W  LL + + H  V  GE       +LG +       L  +         VA+MRKL+K
Sbjct: 381 LWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIK 440

Query: 513 ERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLF 572
           ++GIKT PG S I+V+  +H F   D SHP  + IY  L+++  K  M GY  + SQ +F
Sbjct: 441 KQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIF 500

Query: 573 --DIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKR 630
                EE  E++  YHSEKLAIAFG   T  G ++R++KNLRVC DCH  TK +S+ F R
Sbjct: 501 HGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNR 560

Query: 631 DIIVRDRVRYHHFRNGKCSCNDFW 654
           DIIVRDR+R+HHF+ G CSC D+W
Sbjct: 561 DIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/640 (34%), Positives = 332/640 (51%), Gaps = 61/640 (9%)

Query: 75  HANSRFSNFEL---ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131
           H  + +S  +L   A  V +  +   V  W S++  C+ +      +  +S M      P
Sbjct: 48  HLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLP 107

Query: 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQIL 191
           N FT+P VFKA +       G Q+HA  +K G   DV V  S   MY+  G   +AR + 
Sbjct: 108 NDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMF 167

Query: 192 DDGSKSDVICWNALIDGYLKCGDIEGAKELFKS----TKDKNTGSYNAMIS--------- 238
           D+    ++  WNA +   ++ G    A   FK       + N  ++ A ++         
Sbjct: 168 DEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLE 227

Query: 239 ------GFARFGRFEEARKLFNEMND----------------------KDEITWSAIIDG 270
                 GF    R+ E   +FN + D                      ++ ++W +++  
Sbjct: 228 LGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAA 287

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
             ++   + A  VF +  R +++P  F++S VL+ACA LG L+ G  +H    +  +  +
Sbjct: 288 LVQNHEEERACMVFLQ-ARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEEN 346

Query: 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390
             +G+ALVD+Y KCG ++ A +VF +M  + + TWNAMIGG A  G  D A+ LF +M  
Sbjct: 347 IFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTS 406

Query: 391 EK--MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
               +    +T   VLSAC+ AG ++RGLQ    M+  YGI+P  EHY C+VDLLGR+G 
Sbjct: 407 GSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGL 466

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------- 499
           +  A E I  MP+ P  +VW ALLGAC+ HG+ + G+   + L E++P +          
Sbjct: 467 VDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNM 526

Query: 500 -----RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
                R ++   +RK M++ GIK N G S + V   +H F+  D  H +  EI  ML K+
Sbjct: 527 LASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKL 586

Query: 555 IEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVC 614
             ++K  GY P+++  LFD++EEEK +   YHSEK+A+AFG I    G  IR+ KNLR+C
Sbjct: 587 RGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRIC 646

Query: 615 EDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            DCHSA K ISK+  R+IIVRD  R+H F++G CSC D+W
Sbjct: 647 IDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 165/376 (43%), Gaps = 54/376 (14%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFEL---ALKVFNSVHKPNVFVWNSVLR 106
           KQ HA+ LK G+  D +V      C A   +S   L   A  +F+ +   N+  WN+ + 
Sbjct: 129 KQLHALALKGGNILDVFVG-----CSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMS 183

Query: 107 ACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166
             ++       I+ + + + VD +PN  T+     AC+   + + G Q+H  +V++    
Sbjct: 184 NAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYRE 243

Query: 167 DVHVKSSGIQMYACFGCVNKARQILD--DGSKSDVICWNALIDGYLK------------- 211
           DV V +  I  Y   G +  +  +       + +V+ W +L+   ++             
Sbjct: 244 DVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQ 303

Query: 212 ------------------CGDIEGAKEL--------FKSTKDKNTGSYNAMISGFARFGR 245
                             C ++ G  EL         K+  ++N    +A++  + + G 
Sbjct: 304 ARKEVEPTDFMISSVLSACAEL-GGLELGRSVHALALKACVEENIFVGSALVDLYGKCGS 362

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK--IKPRKFVLSCVL 303
            E A ++F EM +++ +TW+A+I GY   G    AL +F EM      I      L  VL
Sbjct: 363 IEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVL 422

Query: 304 AACASLGALDQGIWIHDHVK-RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKE 361
           +AC+  GA+++G+ I + ++ R  I   A     +VD+  + G +D A++  + M  +  
Sbjct: 423 SACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPT 482

Query: 362 VFTWNAMIGGLAMHGR 377
           +  W A++G   MHG+
Sbjct: 483 ISVWGALLGACKMHGK 498



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 6/262 (2%)

Query: 225 TKDKNTGSY--NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
           T D    S+  N +++ +++      A+ + +  N +  +TW+++I G   +  +  AL 
Sbjct: 36  THDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALL 95

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
            F+ M+R+ + P  F   CV  A ASL     G  +H    +    +D  +G +  DMY+
Sbjct: 96  HFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYS 155

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           K G    A  +F++M  + + TWNA +      GR  DAI  F K       P+ ITF  
Sbjct: 156 KTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCA 215

Query: 403 VLSACAHAGMIDRGLQALTYM-QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P 460
            L+ACA    ++ G Q   ++ +  Y  D  V  +  ++D  G+ G +  +E V S +  
Sbjct: 216 FLNACADIVSLELGRQLHGFIVRSRYREDVSV--FNGLIDFYGKCGDIVSSELVFSRIGS 273

Query: 461 MEPNAAVWEALLGACRKHGEVE 482
              N   W +LL A  ++ E E
Sbjct: 274 GRRNVVSWCSLLAALVQNHEEE 295


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/656 (32%), Positives = 356/656 (54%), Gaps = 57/656 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H   LKSG      V+  L+  +   +FS    A +VF+ +   +   +N+++   L+  
Sbjct: 230 HGFTLKSGVNSVSVVNNGLLAMYL--KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLE 287

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                + ++ E +    KP+  T  +V  AC           ++ ++++ G   +  VK+
Sbjct: 288 MVEESVKMFLENLD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKN 346

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------- 223
             I +YA  G +  AR + +     D + WN++I GY++ GD+  A +LFK         
Sbjct: 347 ILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQA 406

Query: 224 -----------STKDKN-------------TGSY------NAMISGFARFGRFEEARKLF 253
                      ST+  +             +G Y      NA+I  +A+ G   ++ K+F
Sbjct: 407 DHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIF 466

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           N M   D +TW+ +I    + G +   L+V  +M+++K+ P        L  CASL A  
Sbjct: 467 NSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKR 526

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
            G  IH  + R     +  +G AL++MY+KCG L+ +++VFE M  ++V TW  MI    
Sbjct: 527 LGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYG 586

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           M+G  + A+E F  M++  + PD + F  ++ AC+H+G++++GL     M+  Y IDP +
Sbjct: 587 MYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMI 646

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY C+VDLL R+  +++AEE I +MP+EP+A++W ++L ACR  G++E  ER+ + ++E
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIE 706

Query: 494 MEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           + P +              R+ D V+ +RK ++++ IK NPG S I++   +H F +GD 
Sbjct: 707 LNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDD 766

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI-DEEEKETAPKYHSEKLAIAFGFIN 598
           S PQ + I+  L+ +   +  EGY P+S +V  ++ +EEEK      HSE+LAIAFG +N
Sbjct: 767 SAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLN 826

Query: 599 TDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           T+PG  ++V+KNLRVC DCH  TKLISK+  R+I+VRD  R+H F++G CSC D W
Sbjct: 827 TEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 214/455 (47%), Gaps = 68/455 (14%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP-NVFVWN 102
           ++   L++ HA+++  G     + SG L+  +  S F     +L VF  V    NV++WN
Sbjct: 18  SNLNELRRIHALVISLGLDGSDFFSGKLIDKY--SHFRAPASSLSVFRRVSPAKNVYIWN 75

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN 162
           S++RA  ++    + +  Y ++      P+K+T+P+V KAC+     + G  V+      
Sbjct: 76  SIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY------ 129

Query: 163 GLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
                                    +QIL+ G +SD+   NAL+D Y             
Sbjct: 130 -------------------------KQILEMGFESDLYVGNALVDMY------------- 151

Query: 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALE 282
                             +R G    AR++F+EM  +D ++W+++I GY+  GYY+EALE
Sbjct: 152 ------------------SRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342
           +++E++   I P  F +S VL A A+L  + QG  +H    ++ +   +V+   L+ MY 
Sbjct: 194 IYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYL 253

Query: 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402
           K  R   A +VF++M +++  T+N MI G       ++++++F +   ++ +PD +T   
Sbjct: 254 KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTS 312

Query: 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           VL AC H   +        YM +  G   E      ++D+  + G +  A +V +SM  +
Sbjct: 313 VLCACGHLRDLSLAKYIYNYMLRA-GFVLESTVKNILIDVYAKCGDMITARDVFNSMECK 371

Query: 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497
              + W +++    + G++    +L K+++ ME Q
Sbjct: 372 DTVS-WNSIISGYIQSGDLMEAMKLFKMMMIMEEQ 405



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 128/275 (46%), Gaps = 14/275 (5%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H+  +KSG + D  VS  L+  +A  +      +LK+FNS+   +   WN+V+ AC+
Sbjct: 428 KGLHSNGIKSGIYIDLSVSNALIDMYA--KCGEVGDSLKIFNSMGTLDTVTWNTVISACV 485

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
              +    + + ++M      P+  T+      C+   A + G ++H  +++ G   ++ 
Sbjct: 486 RFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KST 225
           + ++ I+MY+  GC+  + ++ +  S+ DV+ W  +I  Y   G+ E A E F    KS 
Sbjct: 546 IGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSG 605

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKEA 280
              ++  + A+I   +  G  E+    F +M    +I      ++ ++D  ++     +A
Sbjct: 606 IVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKA 665

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
            E    M    I+P   + + VL AC + G ++  
Sbjct: 666 EEFIQAM---PIEPDASIWASVLRACRTSGDMETA 697


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/555 (36%), Positives = 305/555 (54%), Gaps = 63/555 (11%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           LKQ H  I+ +G  Q +++   L+  +  S   N   A KVF  +  P+  VWN ++R  
Sbjct: 50  LKQIHTQIIVNGFSQKNFLLVKLLSFYITS--GNLLNAHKVFERIENPSTTVWNQMIRGH 107

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            +   P +++ LY+ MV  +++PN+FTY  +   C+ +   +EG QVH  VV NG C +V
Sbjct: 108 SQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNV 167

Query: 169 HVKSSGIQMYACFG---CVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST 225
            V++S + +YA  G    V KAR++ D+    +++ WN+L+ GY++CGD++GA+ +F   
Sbjct: 168 FVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEM 227

Query: 226 KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFN 285
            ++N  S+  MI+G A+ GR ++A                               L +F+
Sbjct: 228 PERNVVSWTTMIAGCAQIGRCKQA-------------------------------LHLFH 256

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD------HVKRNSICVDAVLGTALVD 339
           EM+R  +K  +  L   L+ACA LG L  G WIH       H     + V   L  +L+ 
Sbjct: 257 EMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVS--LNNSLIH 314

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR---EKMRPD 396
           MYA CG +D A+KVF  M+ +   +W +MI G A  G A++A+ +F  MQR   ++ RPD
Sbjct: 315 MYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPD 374

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            ITF  VL AC+HAG +D+G      M + +GI P +EHYGC+VDLL RAG+L EA  + 
Sbjct: 375 GITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLX 434

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLG-KILLEMEPQN---------------RR 500
            SMPM+PN AVW ALLG CR H   E    +  K++LE++P                 +R
Sbjct: 435 ESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKR 494

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DVA +R+ M E G++   G S + +NGV+H+F  GD +H     +Y ML KI  + K+
Sbjct: 495 WQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKL 554

Query: 561 EGYSPNSSQVLFDID 575
           EGY  + S+VL D++
Sbjct: 555 EGYKLDISEVLLDVE 569


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 285/447 (63%), Gaps = 27/447 (6%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-- 291
           N+++  +A  GR   A  +F  + D+  ++W+  +D    +G +  AL++F EMQRD+  
Sbjct: 103 NSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPD 162

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKR-----NSICVDAVLGTALVDMYAKCGR 346
           + P  + +  VL ACA+ GAL  G++ H  + R     +++  D ++  +LVD+Y KCG 
Sbjct: 163 LAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKCGA 222

Query: 347 LDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLS 405
           +++A +VF+ M  +++ +WNAM+  LA HGR  D+++LF +M R E + P+ ITF  VLS
Sbjct: 223 VELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVLS 282

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           AC H G++D G +    M   +GI P +EHYGC+VD+L RAG++ EA +V++ M   P++
Sbjct: 283 ACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPDS 342

Query: 466 AVWEALLGAC-RKHGEVEFGERLGKILLEME---------------PQNRRCDDVAKMRK 509
            +W +LL AC +++  +E  E + K+ L++                   +R +DV  +R+
Sbjct: 343 IIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGMIRQ 402

Query: 510 LMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569
           LM + G K  PG S I+++G +H+F  GD SHPQ +EIY+ L +I ++L   GY P+ S+
Sbjct: 403 LMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPDLSE 462

Query: 570 --VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKV 627
             ++ DID  +  T  + HSE+LAI+FG +N  PGA IR++KNLRVC+DCH+ +KLISK+
Sbjct: 463 APMVADIDRTKGATL-RLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKL 521

Query: 628 FKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +  +IIVRDR+R+HHF++G CSC D+W
Sbjct: 522 YNVEIIVRDRIRFHHFKDGSCSCKDYW 548



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 7/157 (4%)

Query: 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391
           V+  +LV  YA CGR   A  VF  +  + + +WN  +  LA +G    A++LF +MQR+
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 392 K--MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG----IDPEVEHYGCIVDLLGR 445
           +  + PD  T   VL ACA  G +  GL A   + +  G    +  +V     +VDL G+
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGK 219

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
            G +  A +V   M  E + A W A++ A   HG V+
Sbjct: 220 CGAVELARQVFDRMS-ERDLASWNAMVLALANHGRVQ 255



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 34/239 (14%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG--VDSKPNKFTYPTVFKAC 143
           AL VF  V   ++  WN+ + A   + +    + L+ EM     D  P+ +T  +V  AC
Sbjct: 118 ALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDAYTVQSVLGAC 177

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           + T A   G+  HA +++  L G   V                           DV+  N
Sbjct: 178 AATGALSLGLYAHALLLRE-LGGASAVSR-------------------------DVLINN 211

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND----- 258
           +L+D Y KCG +E A+++F    +++  S+NAM+   A  GR +++  LF+ M       
Sbjct: 212 SLVDLYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLV 271

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK-IKPRKFVLSCVLAACASLGALDQGI 316
            + IT+ A++      G   E    F  M  +  I+PR     C++   A  G +++ +
Sbjct: 272 PNAITFVAVLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEAL 330


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/630 (34%), Positives = 329/630 (52%), Gaps = 61/630 (9%)

Query: 85   LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144
            +A KVF+S+ + NV  W +++   + + +    +SL++EM      PN+FT+ T  KAC 
Sbjct: 422  IAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACG 481

Query: 145  ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNA 204
            +  A ++G+Q+H   +K G    V V +S + MY+  G +N+A ++        +I WNA
Sbjct: 482  LLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNA 541

Query: 205  LIDGYLKCG---------------DIEGAKELFKSTKDKNTGSYNAMI------------ 237
            +I GY+  G                I+   + F  T      S   MI            
Sbjct: 542  MIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 601

Query: 238  SGF----------------ARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
            SGF                 + G    ARK F+++ +K  I+WS++I GY ++G + EA+
Sbjct: 602  SGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAM 661

Query: 282  EVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341
             +F  +Q    +   FVLS ++   A    L QG  +   V +    ++  +  +LVDMY
Sbjct: 662  GLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMY 721

Query: 342  AKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401
             KCG +D A K F +M++K+V +W  MI G   HG    A+ +F KM R  + PD + + 
Sbjct: 722  LKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYL 781

Query: 402  CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM 461
             VLSAC+H+GMI  G +  + + +  GI P VEHY C+VDLLGRAG L EA+ ++ +MP+
Sbjct: 782  AVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPI 841

Query: 462  EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR--------------CDDVAKM 507
            +PN  +W+ LL  CR HG++E G+ +GKILL ++ +N                 ++    
Sbjct: 842  KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNA 901

Query: 508  RKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKME-GYSPN 566
            R+L   +G++   G S +++   +H FR+G+ SHP    I   LK++  +L+ E GY   
Sbjct: 902  RELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYG 961

Query: 567  SSQVLFDIDEEEKETAPKYHSEKLAIAFGFIN---TDPGATIRVIKNLRVCEDCHSATKL 623
                L DID+E KE   + HSEKLAI            G TIRV KNLRVC DCH   K 
Sbjct: 962  LKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKG 1021

Query: 624  ISKVFKRDIIVRDRVRYHHFRNGKCSCNDF 653
            +SK+ K   +VRD VR+H F +G CSC D+
Sbjct: 1022 LSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 137/307 (44%), Gaps = 35/307 (11%)

Query: 194 GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLF 253
           GS  ++I  N LID Y KC +   A ++F S  ++N  S+ A++SG              
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSG-------------- 444

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
                            +  +G    +L +F EM R  I P +F  S  L AC  L AL+
Sbjct: 445 -----------------HVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALE 487

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +G+ IH    +    +   +G +LVDMY+KCGR++ A KVF  M  + + +WNAMI G  
Sbjct: 488 KGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYV 547

Query: 374 MHGRADDAIELFFKMQREKM--RPDRITFACVLSACAHAGMIDRGLQALTYM-QQMYGID 430
             G    A+  F  MQ  K+  RPD  T   +L AC+  GMI  G Q   ++ +  +   
Sbjct: 548 HAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCP 607

Query: 431 PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490
                 G +VDL  + G L  A +    +  E     W +L+    + G+      L K 
Sbjct: 608 SSATITGSLVDLYVKCGNLFSARKAFDQIK-EKTMISWSSLILGYAQEGDFVEAMGLFKR 666

Query: 491 LLEMEPQ 497
           L E+  Q
Sbjct: 667 LQELSSQ 673



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
           I+ + + + +   ++ +    L+DMY KC    +A+KVF+ M  + V +W A++ G  ++
Sbjct: 389 IFTNSNFRLSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLN 448

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435
           G  + ++ LF +M R+ + P+  TF+  L AC     +++GLQ   +  ++ G +  VE 
Sbjct: 449 GDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKI-GFEMMVEV 507

Query: 436 YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGER-LGKILLEM 494
              +VD+  + G + EAE+V   M +  +   W A++      G   +G R L    +  
Sbjct: 508 GNSLVDMYSKCGRINEAEKVFRWM-VGRSLISWNAMIAGYVHAG---YGSRALATFGMMQ 563

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSH 541
           E + +   D   +  L+     K    + MI     IH F    G H
Sbjct: 564 EAKIKERPDEFTLTSLL-----KACSSTGMIYAGKQIHGFLVRSGFH 605



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 123/277 (44%), Gaps = 16/277 (5%)

Query: 50  KQAHAVILKSGHF--QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           KQ H  +++SG        ++G+LV  +   +  N   A K F+ + +  +  W+S++  
Sbjct: 593 KQIHGFLVRSGFHCPSSATITGSLVDLYV--KCGNLFSARKAFDQIKEKTMISWSSLILG 650

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             +  +    + L+  +  + S+ + F   ++    +     ++G Q+ A VVK     +
Sbjct: 651 YAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLE 710

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
             V +S + MY   G V++A +   +    DVI W  +I GY K G  + A  +F     
Sbjct: 711 TSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLR 770

Query: 228 KNTGS----YNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYK 278
            N       Y A++S  +  G  +E  +LF+++ +   I      ++ ++D   + G  K
Sbjct: 771 HNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLK 830

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           EA  + + M    IKP   +   +L+ C   G ++ G
Sbjct: 831 EAKHLVDTM---PIKPNVGIWQTLLSLCRVHGDIELG 864


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/642 (33%), Positives = 344/642 (53%), Gaps = 82/642 (12%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           ++K IL +L   C+ S + L++ HA ++ SG      ++  L+   A S   +   A  +
Sbjct: 3   NEKAILALLQ-GCN-SLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLL 60

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEA 148
           F+ +  P    WNS++R   + + P   I  Y++MV    S P+ FT+  V KAC   +A
Sbjct: 61  FHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKA 120

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           +++             C +VH                    ++  G  +DVI    L+  
Sbjct: 121 ERK-------------CKEVH------------------GSVIRCGYDADVIVCTNLV-- 147

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
             KC                    Y+AM       G    AR++F++M  +D + W+A+I
Sbjct: 148 --KC--------------------YSAM-------GSVCIARQVFDKMPARDLVAWNAMI 178

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             +++ G ++EAL+ +N+M+ + +    F L  ++++CA LGAL+ G+ +H   + N + 
Sbjct: 179 SCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLD 238

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
               +G AL+DMYAKCG LD A  +F+ M+ K++FTWN+MI G  +HGR  +AI  F +M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              +++P+ +TF  +L  C+H G++  G++    M   + + PEV+HYGC+VDL GRAG 
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE----RLGK----------ILLEM 494
           L +A E++S+     ++ +W  LLG+C+ H  V  GE    RL +          +L  +
Sbjct: 359 LDKALEIVSN-SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATI 417

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
               +    VA+MRK++K +G KT PG S I++   +H+F   D SH    E+Y  L+++
Sbjct: 418 YAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 555 IEKLKMEGYSPNSSQVLFDI--DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
           I +    GY  + S    D+    E  +T+  YHSEKLAIAFG   T  G  IR++KNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VC DCHS  K +S  F R+IIVRDRVR+HHF+ G+CSCND+W
Sbjct: 538 VCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 350/645 (54%), Gaps = 88/645 (13%)

Query: 30  SQKTILDILNTKCHTSWQHLK--QAHAVILKSGHFQ-DHYVSGTLVKCHANSRFSNFELA 86
           ++ T+L++L   C    Q LK  + H   L+ G  Q D  V+   V  +A  +  +   A
Sbjct: 399 NEVTLLNVLPV-CEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYA--KCGSLHYA 455

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
             VF  +    V  WN+++   +++  P + + LY  M G   +P+ FT  ++  AC+  
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
           ++   G ++H                                 +L +G + D     +L+
Sbjct: 516 KSLSCGKEIHG-------------------------------SMLRNGFELDEFICISLV 544

Query: 207 DGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSA 266
             Y++CG I  AK LF                              F+ M +K+ + W+ 
Sbjct: 545 SLYVQCGKILLAK-LF------------------------------FDNMEEKNLVCWNT 573

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I+G++++ +  +AL++F++M   KI P +  +   L AC+ + AL  G  +H    ++ 
Sbjct: 574 MINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH 633

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           +   + +  +L+DMYAKCG ++ +  +F+ + +K   TWN +I G  +HG    AIELF 
Sbjct: 634 LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFK 693

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
            MQ    RPD +TF  +L+AC HAG++  GL+ L  MQ ++GI P++EHY C+VD+LGRA
Sbjct: 694 SMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRA 753

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------- 499
           G L EA E+++ +P +P++ +W +LL +CR + +++ GE++   LLE+ P          
Sbjct: 754 GRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLIS 813

Query: 500 -------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQ---VKEIYL 549
                  + D+V KMR+ MKE G++ + G S I++ G +  F  GD S  Q   +++ ++
Sbjct: 814 NFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWI 873

Query: 550 MLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIK 609
            L+K I K+   GY P++S VL +++E+EK    + HSEKLAI+FG +NT  G T+RV K
Sbjct: 874 ELEKKINKI---GYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCK 930

Query: 610 NLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           NLR+C DCH+A KL+SK+ KR+IIVRD  R+HHF+NG CSC D+W
Sbjct: 931 NLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 231/498 (46%), Gaps = 53/498 (10%)

Query: 52  AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEH 111
            H   LK+    D +V   L+  +   +F   E A+KVF+ + + N+  WNSV+ ACLE+
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYG--KFGFVESAVKVFDKMPQRNLVSWNSVMYACLEN 275

Query: 112 NEPWRVISLYSEMVGVDS--KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   L+  ++  D    P+  T  TV   C+     + G+  H   +K GLCG++ 
Sbjct: 276 GVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELK 335

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST---- 225
           V SS + MY+  G + +AR + D   K +VI WN++I GY K  D  GA EL +      
Sbjct: 336 VNSSLLDMYSKCGYLCEARVLFDTNEK-NVISWNSMIGGYSKDRDFRGAFELLRKMQMED 394

Query: 226 -----------------------KDKNTGSY--------------NAMISGFARFGRFEE 248
                                  K K    Y              NA ++G+A+ G    
Sbjct: 395 KVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHY 454

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F  M  K   +W+A+I G+ ++G+ ++AL+++  M+   ++P  F ++ +L+ACA 
Sbjct: 455 AEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACAR 514

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           L +L  G  IH  + RN   +D  +  +LV +Y +CG++ +A   F++M+ K +  WN M
Sbjct: 515 LKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTM 574

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
           I G + +    DA+++F +M   K+ PD I+    L AC+    +  G +   +  + + 
Sbjct: 575 INGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH- 633

Query: 429 IDPEVEHYGC-IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERL 487
              E     C ++D+  + G + +++ +   + ++     W  L+     HG    G + 
Sbjct: 634 -LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLK-GEVTWNVLITGYGIHGH---GRKA 688

Query: 488 GKILLEMEPQNRRCDDVA 505
            ++   M+    R D V 
Sbjct: 689 IELFKSMQNAGFRPDSVT 706



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 223/475 (46%), Gaps = 60/475 (12%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  I  S HFQ+  V  T +    +   S ++  L VFN+  + N+F+WN++L   L
Sbjct: 113 RKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCL-VFNASRRKNLFLWNALLSGYL 171

Query: 110 EHNEPWRVISLYSEMVGV-DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
            ++     + ++ EM+ + +  P+ FT P V KAC      + G  VH   +K  +  DV
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDV 231

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            V ++ I MY  FG V  A ++ D   + +++ WN+++   L+ G  E +  LFK   + 
Sbjct: 232 FVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNG 291

Query: 229 NTGSY-----------------------------------------NAMISGFARFGRFE 247
           + G                                           ++++  +++ G   
Sbjct: 292 DEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLC 351

Query: 248 EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ-RDKIKPRKFVLSCVLAAC 306
           EAR LF + N+K+ I+W+++I GY+KD  ++ A E+  +MQ  DK+K  +  L  VL  C
Sbjct: 352 EARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410

Query: 307 ASLGALDQGIWIHDHVKRNS-ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
                  +   IH +  R+  I  D ++  A V  YAKCG L  A  VF  M+ K V +W
Sbjct: 411 EEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSW 470

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           NA+IGG   +G    A++L+  M+   + PD  T A +LSACA        L++L+  ++
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACAR-------LKSLSCGKE 523

Query: 426 MYGI----DPEVEHYGCI--VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           ++G       E++ + CI  V L  + G +  A+    +M  E N   W  ++  
Sbjct: 524 IHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING 577



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 252 LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM-QRDKIKPRKFVLSCVLAACASLG 310
           +FN    K+   W+A++ GY ++  +++A+ VF EM    +  P  F L CV+ AC  + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIG 370
            +  G  +H    +  +  D  +G AL+ MY K G ++ A KVF+ M  + + +WN+++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 371 GLAMHGRADDAIELFFKMQR--EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYG 428
               +G  +++  LF  +    E + PD  T   V+  CA  G +  G+     +    G
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLG 329

Query: 429 IDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           +  E++    ++D+  + GYL EA  +  +   E N   W +++G   K
Sbjct: 330 LCGELKVNSSLLDMYSKCGYLCEARVLFDT--NEKNVISWNSMIGGYSK 376



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS-ICVDAVLGTALVDMYAKCGRLDMAW 351
           KP++ +   +L  C     ++ G  IH+ +  +     D VL T LV MY+ C     + 
Sbjct: 91  KPKQLI-GLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSC 149

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM-QREKMRPDRITFACVLSACAHA 410
            VF   + K +F WNA++ G   +    DA+ +F +M    +  PD  T  CV+ AC   
Sbjct: 150 LVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--V 207

Query: 411 GMIDRGL-QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWE 469
           G+ D  L +A+        +  +V     ++ + G+ G++  A +V   MP + N   W 
Sbjct: 208 GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWN 266

Query: 470 ALLGACRKHGEVEFGERLGKILL 492
           +++ AC ++G  E    L K LL
Sbjct: 267 SVMYACLENGVFEESYGLFKGLL 289


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/655 (32%), Positives = 340/655 (51%), Gaps = 55/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  +LKS HF D YV+  L+  +A  +    E A +VF S+   +   WN++L   +++ 
Sbjct: 271 HGAVLKSNHFADVYVANALIAMYA--KCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNE 328

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                ++ + +M     KP++ +   +  A   +    +G +VHA+ ++NGL  ++ + +
Sbjct: 329 LYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGN 388

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN--- 229
           + + MYA   CV       +   + D+I W  +I GY +      A  LF+  + K    
Sbjct: 389 TLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDV 448

Query: 230 ----TGSY-------------------------------NAMISGFARFGRFEEARKLFN 254
                GS                                NA+++ +   G  + AR+ F 
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFE 508

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
            +  KD ++W+++I     +G   EALE+F  +++  I+P    +   L+A A+L +L +
Sbjct: 509 SIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  IH  + R    ++  + ++LVDMYA CG ++ + K+F  +K +++  W +MI    M
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
           HG  + AI LF KM  + + PD ITF  +L AC+H+G++  G +    M+  Y ++P  E
Sbjct: 629 HGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPE 688

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM 494
           HY C+VDLL R+  L EA   + +MP++P++ +W ALLGAC  H   E GE   K LL+ 
Sbjct: 689 HYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQS 748

Query: 495 EPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGS 540
           + +N               R +DV ++R  MK  G+K NPG S I+V+  IH F   D S
Sbjct: 749 DTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKS 808

Query: 541 HPQVKEIYLMLKKIIEKL-KMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           HPQ  +IYL L +  + L K  GY   +  V  ++ EEEK      HSE+LA+ +G + T
Sbjct: 809 HPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVT 868

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             G  IR+ KNLR+C+DCH+  K+ S+V +R ++VRD  R+HHF  G CSC DFW
Sbjct: 869 PKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 247/542 (45%), Gaps = 76/542 (14%)

Query: 1   MSTKVTTTDLPHHLKPEEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVIL--- 57
           MST + T   P  LKP  ++  N  T + + ++ L +L+T    +   L+ AH+++L   
Sbjct: 1   MSTSILT---PLPLKPISVNTLNKGTLKPAFQS-LTLLSTHPLATPSRLEHAHSLLLDLC 56

Query: 58  --KSGHFQDHYVSGTLVKCHANSRFS-----------NFELALKVFNSVHKPNVFVWNSV 104
                  Q   +   L+K H ++  +           +   A+KVF+ + +  +F WN++
Sbjct: 57  VAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNAL 116

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           + A +   +    I LY +M  +    +  T+P+V KAC      + G ++H   VK G 
Sbjct: 117 MGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGY 176

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKEL 221
              V V ++ I MY   G +  AR +L DG    K D + WN++I  ++  G+   A  L
Sbjct: 177 GEFVFVCNALIAMYGKCGDLGGAR-VLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 222 FKSTKD----KNTGSY-----------------------------------NAMISGFAR 242
           F+  ++     NT ++                                   NA+I+ +A+
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            GR E+A ++F  M  +D ++W+ ++ G  ++  Y +AL  F +MQ    KP +  +  +
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           +AA    G L +G  +H +  RN +  +  +G  LVDMYAKC  +      FE M  K++
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            +W  +I G A +    +AI LF K+Q + M  D +    VL AC+       GL++  +
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNF 468

Query: 423 MQQMYGID-----PEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
           +++++G        ++     IV++ G  G++  A     S+    +   W +++  C  
Sbjct: 469 IREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMITCCVH 527

Query: 478 HG 479
           +G
Sbjct: 528 NG 529



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/501 (21%), Positives = 224/501 (44%), Gaps = 49/501 (9%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSV--HKPNVFVWNSVLRAC 108
           + H V +K G+ +  +V   L+  +   +  +   A  +F+ +   K +   WNS++ A 
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMYG--KCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +        +SL+  M  V    N +T+    +        K G+ +H  V+K+    DV
Sbjct: 224 VAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADV 283

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL------------------ 210
           +V ++ I MYA  G +  A ++ +     D + WN L+ G +                  
Sbjct: 284 YVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNS 343

Query: 211 -----------------KCGDIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
                            + G++   KE+     ++  D N    N ++  +A+    +  
Sbjct: 344 GQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYM 403

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
              F  M++KD I+W+ II GY ++ ++ EA+ +F ++Q   +     ++  VL AC+ L
Sbjct: 404 GHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGL 463

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            + +    IH +V +  +  D +L  A+V++Y + G +D A + FE ++ K++ +W +MI
Sbjct: 464 KSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMI 522

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
                +G   +A+ELF+ +++  ++PD I     LSA A+   + +G +   ++ +  G 
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GF 581

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
             E      +VD+    G +  + ++  S+  + +  +W +++ A   HG    G +   
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHG---CGNKAIA 637

Query: 490 ILLEMEPQNRRCDDVAKMRKL 510
           +  +M  QN   D +  +  L
Sbjct: 638 LFKKMTDQNVIPDHITFLALL 658


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 318/560 (56%), Gaps = 22/560 (3%)

Query: 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176
           V++ +  +  +  KP+  +  +  +A       K G ++H +++++ L  DV+V +S + 
Sbjct: 2   VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----S 232
           MY    C+ KA+ +L      +V  WN+LI GY   G    A +L     ++       +
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
           +N ++SG++  GR +EA  + N +       + ++W+A+I G +++  Y +AL++F++MQ
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348
            + +KP    +  +L ACA    L +G  +H    +     D  + TAL+DMY++ G+L 
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLK 241

Query: 349 MAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408
           +A+ VF  ++ K +  WN M+ G A+H   ++ + L+ KM+   +RPD ITF  +LSAC 
Sbjct: 242 VAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACK 301

Query: 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468
           ++G++D G +    MQ+ Y I P +EHY C+VDLLG++G+L EA   I +MP++P+A++W
Sbjct: 302 NSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIW 361

Query: 469 EALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKER 514
            ALL +C+ H  ++  E   + L +MEP N               R   V +++  M   
Sbjct: 362 GALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVL 421

Query: 515 GIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDI 574
            +K  P  S   VN  IH F T    HP+  EIY  L ++I +++  GY+P+ + V  +I
Sbjct: 422 AMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNI 481

Query: 575 DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIV 634
           D+ EKE     H+EKLA+ +G +    G+ IR++KN R+C DCH+  K IS V KR+I++
Sbjct: 482 DDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREILL 541

Query: 635 RDRVRYHHFRNGKCSCNDFW 654
           RD  R+HHF+NGKC+CND W
Sbjct: 542 RDGGRFHHFKNGKCACNDRW 561



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 86  ALKVFNSVHK----PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           AL + N +      PNV  W +++  C ++ +    + ++S+M   + KPN  T  ++  
Sbjct: 138 ALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLC 197

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+     K+G ++H   +K G   D++V ++ I MY+  G +  A  + +   +  + C
Sbjct: 198 ACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPC 257

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WN ++ GY      E    L+   +++    +  ++ A++S     G  +E  K F+ M 
Sbjct: 258 WNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQ 317

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
           +   I      +  ++D   K G+  EA      M    IKP   +   +LA+C
Sbjct: 318 EDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETM---PIKPDASIWGALLASC 368



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 23/220 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H   +K G   D YV+  L+  ++ +     ++A  VFN + +  +  WN ++    
Sbjct: 209 EELHCFSMKLGFVDDIYVATALIDMYSEA--GKLKVAYNVFNKIQEKTLPCWNCMMMGYA 266

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            H+    V+ LY +M     +P+  T+  +  AC  +    EG +       + +  D +
Sbjct: 267 IHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYF-----DSMQEDYN 321

Query: 170 VKSSGIQMYACFGCVNKARQILDDGS--------KSDVICWNAL-----IDGYLKCGDIE 216
           +  + I+ Y C   +      LD+ S        K D   W AL     I   +K  +I 
Sbjct: 322 IVPT-IEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIHKNIKLAEI- 379

Query: 217 GAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM 256
            A++LFK  +  N+ +Y  M++ ++   R+    +L + M
Sbjct: 380 AARKLFK-MEPNNSANYVLMMNLYSSLNRWVAVERLKHSM 418


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/664 (33%), Positives = 351/664 (52%), Gaps = 62/664 (9%)

Query: 50   KQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
            ++ H  IL++G       +S  LV  +A  +    + A +VF  +   +   WN+++   
Sbjct: 394  REVHGHILRTGLIDLKIALSNGLVNMYA--KCGAIDKASRVFRLLCARDRVSWNTIISVL 451

Query: 109  LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             ++      +  Y  M      P+ F   +   +C+       G QVH   VK GL  D 
Sbjct: 452  DQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDT 511

Query: 169  HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK-----CGDIEGAKELFK 223
             V ++ ++MY   G  +++ +I +  ++ D++ WN+++   +         +E    + +
Sbjct: 512  SVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMR 571

Query: 224  STKDKNTGSY-----------------------------------NAMISGFARFGRFEE 248
            S    N  ++                                   NA++S +A+ G  + 
Sbjct: 572  SGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDS 631

Query: 249  ARKLFNEMNDK-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACA 307
              +LF+ M+ + D ++W+++I GY  +G+ +E ++    M            S VL ACA
Sbjct: 632  CEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACA 691

Query: 308  SLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNA 367
            S+ AL++G+ +H    R+ +  D V+ +AL+DMY+KCGR+D A KVF  M  K  F+WN+
Sbjct: 692  SVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNS 751

Query: 368  MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427
            MI G A HG  + A+E+F +MQR    PD +TF  VLSAC+HAG++DRGL     M+  +
Sbjct: 752  MISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-H 810

Query: 428  GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE---VEFG 484
            GI P +EHY C++DLLGRAG L + +E I+ MPM+PN  +W  +L ACR+  +   ++ G
Sbjct: 811  GILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLG 870

Query: 485  ERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGV 530
            +   ++LLE+EPQN               R +D AK R  M    +K   G S + +   
Sbjct: 871  KEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDG 930

Query: 531  IHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
            +H F  GD SHP  KEIY  L  +I+K+K  GY P +   L+D++EE KE    YHSEKL
Sbjct: 931  VHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKL 990

Query: 591  AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
            A+AF    +     IR++KNLRVC DCH+A + IS++  R II+RD +R+HHF +GKCSC
Sbjct: 991  AVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSC 1050

Query: 651  NDFW 654
             D+W
Sbjct: 1051 GDYW 1054



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 220/506 (43%), Gaps = 65/506 (12%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           L Q  A +LKSG   D YV   LV   A  R    + A  +F ++ + N    N ++   
Sbjct: 289 LDQVFARVLKSGSSSDLYVGSALVSAFA--RHGMLDEAKDIFINLKERNAVTLNGLIVGL 346

Query: 109 LEHNEPWRVISLYSEMVGVDS-KPNKFTYPTVFKACSITEADKEGV----QVHAHVVKNG 163
           ++ +     + ++  M   DS   N  T+  +  A +     ++G+    +VH H+++ G
Sbjct: 347 VKQHCSEEAVGIF--MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTG 404

Query: 164 LCGDVHVKSSG-IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAK--- 219
           L       S+G + MYA  G ++KA ++       D + WN +I    + G  EGA    
Sbjct: 405 LIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNY 464

Query: 220 ------------------------------------ELFKSTKDKNTGSYNAMISGFARF 243
                                               +  K   D +T   NA++  +   
Sbjct: 465 CMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDC 524

Query: 244 GRFEEARKLFNEMNDKDEITWSAIID-GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
           G   E+ ++FN M + D ++W++I+    +      E++EVF+ M R  + P K     +
Sbjct: 525 GARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNL 584

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK-MKE 361
           L+A + L  L+ G  +H  V ++    D  +  AL+  YAK G +D   ++F  M   ++
Sbjct: 585 LSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRD 644

Query: 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421
             +WN+MI G   +G   + ++  + M       D  TF+ VL+ACA    ++RG++   
Sbjct: 645 AVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGME--- 701

Query: 422 YMQQMYGIDPEVEH----YGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRK 477
                +GI  ++E        ++D+  + G +  A +V +SM  + N   W +++    +
Sbjct: 702 --MHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS-QKNEFSWNSMISGYAR 758

Query: 478 HGEVEFGERLGKILLEMEPQNRRCDD 503
           HG    GE+  +I  EM+ +N  C D
Sbjct: 759 HG---LGEKALEIFEEMQ-RNGACPD 780



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 205/488 (42%), Gaps = 77/488 (15%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           ++ H  ++K G   D ++S  LV  +A    S    A +VF+ + + N   W  ++   +
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKG--SRLAAARQVFDGMLERNAVSWTCLVSGYV 133

Query: 110 EH---NEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD--KEGVQVHAHVVKNGL 164
                +E +RV           S+P  FT+ +V +AC     D     VQVH  V K   
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 165 CGDVHVKSSGIQMYA--CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222
             +  V ++ I MY     G   +A+Q+ D     D+I WNAL+  Y K G +     LF
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 223 K----------------------------------------------STKDKNTGSYNAM 236
                                                          S+ D   GS  A+
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGS--AL 311

Query: 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK 296
           +S FAR G  +EA+ +F  + +++ +T + +I G  K    +EA+ +F    RD      
Sbjct: 312 VSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMG-TRDSFVVNT 370

Query: 297 FVLSCVLAACASLGALDQGIW----IHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAW 351
                +L+A A     + G+     +H H+ R  +  +   L   LV+MYAKCG +D A 
Sbjct: 371 DTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKAS 430

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
           +VF  +  ++  +WN +I  L  +G  + A+  +  M++  + P        LS+CA   
Sbjct: 431 RVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCA--- 487

Query: 412 MIDRGLQALTYMQQM------YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
                L+ LT  QQ+      +G+D +      +V + G  G  +E+ E+ +SM  E + 
Sbjct: 488 ----SLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMA-EHDI 542

Query: 466 AVWEALLG 473
             W +++G
Sbjct: 543 VSWNSIMG 550



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 13/271 (4%)

Query: 220 ELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKE 279
           EL K     +    N +++ +A+  R   AR++F+ M +++ ++W+ ++ GY   G   E
Sbjct: 81  ELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDE 140

Query: 280 ALEVFNEM---QRDKIKPRKFVLSCVLAACASLGA--LDQGIWIHDHVKRNSICVDAVLG 334
           A  VF  M     +  +P  F    VL AC   G   L   + +H  V +     +  + 
Sbjct: 141 AFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVC 200

Query: 335 TALVDMYAKC--GRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE- 391
            AL+ MY  C  G    A +VF+   ++++ TWNA++   A  G       LF  M  + 
Sbjct: 201 NALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDD 260

Query: 392 ---KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              ++RP+  TF  +++A + +      L  +       G   ++     +V    R G 
Sbjct: 261 SAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGM 320

Query: 449 LAEAEEVISSMPMEPNAAVWEALL-GACRKH 478
           L EA+++  ++  E NA     L+ G  ++H
Sbjct: 321 LDEAKDIFINLK-ERNAVTLNGLIVGLVKQH 350



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 17/175 (9%)

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  + +  +  D  L   LV++YAK  RL  A +VF+ M  +   +W  ++ G  + G 
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137

Query: 378 ADDAIELFFKM---QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
            D+A  +F  M     E  RP   TF  VL AC      D G   L +  Q++G+  +  
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQ-----DAGPDLLAFAVQVHGLVSKTI 192

Query: 435 HYG------CIVDLLGR--AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEV 481
           +         ++ + G    G   +A++V  + P+  +   W AL+    K G V
Sbjct: 193 YASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVR-DLITWNALMSVYAKKGYV 246


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/660 (33%), Positives = 348/660 (52%), Gaps = 58/660 (8%)

Query: 50  KQAHAVILKSG-HFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           K+ HA +LKS  H  + YV   L+  +  +R      A ++   ++  +V  WNS+++  
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMY--TRCGKMPQAERILRQMNNADVVTWNSLIKGY 361

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
           +++      +  +S+M+    K ++ +  ++  A         G+++HA+V+K+G   ++
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421

Query: 169 HVKSSGIQMYA-CFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
            V ++ I MY+ C       R  L    K D+I W  +I GY +      A ELF+    
Sbjct: 422 QVGNTLIDMYSKCNLTCYMGRAFLRMHDK-DLISWTTVIAGYAQNDCHVEALELFRDVAK 480

Query: 228 K--------------------------------------NTGSYNAMISGFARFGRFEEA 249
           K                                      +T   N ++  + +      A
Sbjct: 481 KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYA 540

Query: 250 RKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            ++F  +  KD ++W+++I     +G   EA+E+F  M    +      L C+L+A ASL
Sbjct: 541 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASL 600

Query: 310 GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMI 369
            AL++G  IH ++ R   C++  +  A+VDMYA CG L  A  VF+ ++ K +  + +MI
Sbjct: 601 SALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMI 660

Query: 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429
               MHG    A+ELF KM+ E + PD I+F  +L AC+HAG++D G   L  M+  Y +
Sbjct: 661 NAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYEL 720

Query: 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGK 489
           +P  EHY C+VD+LGRA  + EA E +  M  EP A VW ALL ACR H E E GE   +
Sbjct: 721 EPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQ 780

Query: 490 ILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFR 535
            LLE+EP+N               R +DV K+R  MK  G++ +PG S I+++G +H+F 
Sbjct: 781 RLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFT 840

Query: 536 TGDGSHPQVKEIYLMLKKIIEKLKME-GYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAF 594
             D SHP+ KEIY  L ++  KL+ E GY  ++  VL ++DE EK      HSE++AIA+
Sbjct: 841 ARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAY 900

Query: 595 GFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           G + T   A +R+ KNLRVC DCH+  KL+SK+F+RDI++RD  R+HHF +G CSC D W
Sbjct: 901 GLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 202/432 (46%), Gaps = 50/432 (11%)

Query: 18  EISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKS-GHFQDHYVSGTLVKCHA 76
           ++S  N P   F+   +L++   +   S    +Q H+ I K+   F+  +++G LV  + 
Sbjct: 72  DVSENNSPVEAFAY--VLELCGKRRAVSQG--RQLHSRIFKTFPSFELDFLAGKLVFMYG 127

Query: 77  NSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT- 135
             +  + + A KVF+ +     F WN+++ A + + EP   ++LY  M  V+  P   + 
Sbjct: 128 --KCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSS 184

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD-G 194
           +P + KAC+     + G ++H+ +VK G      + ++ + MYA    ++ AR++ D   
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFK------------------------------- 223
            K D + WN+++  Y   G      ELF+                               
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304

Query: 224 ---------STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKD 274
                    ST        NA+I+ + R G+  +A ++  +MN+ D +TW+++I GY ++
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364

Query: 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334
             YKEALE F++M     K  +  ++ ++AA   L  L  G+ +H +V ++    +  +G
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
             L+DMY+KC       + F  M  K++ +W  +I G A +    +A+ELF  + +++M 
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484

Query: 395 PDRITFACVLSA 406
            D +    +L A
Sbjct: 485 IDEMILGSILRA 496



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + + G  ++A K+F+EM D+    W+ +I  Y  +G    AL ++  M+ + +       
Sbjct: 126 YGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSF 185

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
             +L ACA L  +  G  +H  + +        +  ALV MYAK   L  A ++F+  + 
Sbjct: 186 PALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 360 K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG-- 416
           K +   WN+++   +  G++ + +ELF +M      P+  T    L+AC        G  
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE 305

Query: 417 -----LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
                L++ T+  ++Y  +  +  Y        R G + +AE ++  M    +   W +L
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMY-------TRCGKMPQAERILRQMN-NADVVTWNSL 357

Query: 472 L 472
           +
Sbjct: 358 I 358



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 115/269 (42%), Gaps = 15/269 (5%)

Query: 49  LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRAC 108
           +K+ H  IL+ G   D  +   LV  +   R  N   A +VF S+   +V  W S++ + 
Sbjct: 506 VKEIHCHILRKG-LLDTVIQNELVDVYGKCR--NMGYATRVFESIKGKDVVSWTSMISSS 562

Query: 109 LEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDV 168
             +      + L+  MV      +      +  A +   A  +G ++H ++++ G C + 
Sbjct: 563 ALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEG 622

Query: 169 HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK 228
            +  + + MYAC G +  A+ + D   +  ++ + ++I+ Y   G  + A ELF   + +
Sbjct: 623 SIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHE 682

Query: 229 NTG----SYNAMISGFARFGRFEEARKLFNEMNDKDEIT-----WSAIIDGYTKDGYYKE 279
           N      S+ A++   +  G  +E R     M  + E+      +  ++D   +     E
Sbjct: 683 NVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVE 742

Query: 280 ALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A E    M   K +P   V   +LAAC S
Sbjct: 743 AFEFVKMM---KTEPTAEVWCALLAACRS 768



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 15/259 (5%)

Query: 302 VLAACASLGALDQGIWIHDHVKRN--SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
           VL  C    A+ QG  +H  + +   S  +D + G  LV MY KCG LD A KVF++M  
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVFMYGKCGSLDDAEKVFDEMPD 144

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419
           +  F WN MIG    +G    A+ L++ M+ E +     +F  +L ACA    I  G + 
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            + + ++ G          +V +  +   L+ A  +      + +A +W ++L +    G
Sbjct: 205 HSLLVKL-GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSG 263

Query: 480 E-VEFGERLGKILLEMEPQNR--------RCD--DVAKMRKLMKERGIKTNPGSSMIDVN 528
           + +E  E   ++ +     N          CD    AK+ K +    +K++  SS + V 
Sbjct: 264 KSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVC 323

Query: 529 GVIHEFRTGDGSHPQVKEI 547
             +    T  G  PQ + I
Sbjct: 324 NALIAMYTRCGKMPQAERI 342


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/615 (32%), Positives = 332/615 (53%), Gaps = 55/615 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           HA IL+  H  D      L+  +A  +    +LA +VF S+ + +   WNS++   +   
Sbjct: 301 HARILRMEHSLDLVFGNGLIDMYA--KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFG 358

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                + L+++M       ++F  PT+   CS  +    G  +H + +K+G+        
Sbjct: 359 LGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGM-------- 410

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS 232
                                GS + V   NA+I  Y KCGD + A  +F+    +NT S
Sbjct: 411 ---------------------GSSAPV--GNAIITMYAKCGDTDKADLVFRLMPLRNTIS 447

Query: 233 YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292
           + AMI+ F+R G   +AR  F+ M +++ +TW++++  Y ++G+ +E L+++  M+ + +
Sbjct: 448 WTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGV 507

Query: 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352
           +P     +  + ACA L  +  G+ +  H  +  + ++  +  ++V MY++CG +  A  
Sbjct: 508 QPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKN 567

Query: 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412
            F+ +  K++ +WNAM+   A +G     I+ F  M + + +P+ I++  VLS C+H G+
Sbjct: 568 TFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGL 627

Query: 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
           +  G      M +++GI P  EH+ C+VDLLGRAG L +A+++I  MP +PNA VW ALL
Sbjct: 628 VAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687

Query: 473 GACRKHGEVEFGERLGKILLE--------------MEPQNRRCDDVAKMRKLMKERGIKT 518
           G+CR H ++   E   K L+E              M  ++   D+VA MRKLMK +GI+T
Sbjct: 688 GSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRT 747

Query: 519 NPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEE 578
           + G S I+V+  +H F   + SHPQ+KE+YL L+++++ ++  G         +   E  
Sbjct: 748 SRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGK--------YITVESS 799

Query: 579 KETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRV 638
              + KYHSEKLA AFG +N      I V+KNLRVC+DCH   KL+S V  R++I+RD  
Sbjct: 800 VHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGY 859

Query: 639 RYHHFRNGKCSCNDF 653
           R+HHF++G CSC D+
Sbjct: 860 RFHHFKDGICSCKDY 874



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 196/434 (45%), Gaps = 72/434 (16%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNE-----------PWRV---------ISLYSEMV 125
           A +VF   H  N+F WN+++RA +  +            P RV         IS YS+  
Sbjct: 62  AFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQN- 120

Query: 126 GVDSKP------------------NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
           G  S+                   + F++ +V KAC      +  +Q+HA V K G    
Sbjct: 121 GFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGF--- 177

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
                 G++      C+                  N+++  Y+KCGD++ A+ +F   + 
Sbjct: 178 ------GMET-----CIQ-----------------NSVVGMYVKCGDVDLAETVFFDIER 209

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
            +   +N+MI G+++     +A ++FN M ++DE++W+ +I  +++ G+  + L +F EM
Sbjct: 210 PSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM 269

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
                 P       VL+ACAS   L  G  +H  + R    +D V G  L+DMYAKCG L
Sbjct: 270 CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCL 329

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
           D+A +VF+ ++  +  +WN++I G+   G  +DA+ LF +M+R  +  D      +L  C
Sbjct: 330 DLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVC 389

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +       G     Y  +  G+         I+ +  + G   +A+ V   MP+  N   
Sbjct: 390 SGPDYASTGELLHGYTIKS-GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLR-NTIS 447

Query: 468 WEALLGACRKHGEV 481
           W A++ A  + G++
Sbjct: 448 WTAMITAFSRSGDI 461



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 166/386 (43%), Gaps = 65/386 (16%)

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM--NDKDEITWSA 266
           Y  CG    A ++F+ T  +N  ++N MI       R  +A KLF+EM    KD ++W+ 
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTT 112

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRK----FVLSCVLAACASLGALDQGIWIHDHV 322
           +I GY+++G++  + E F+ M RD     K    F  + V+ AC SLG     I +H  V
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGG----------- 371
            +    ++  +  ++V MY KCG +D+A  VF D++   +F WN+MI G           
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKAL 232

Query: 372 --------------------LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
                                + HG     + +F +M  +   P+ +T+  VLSACA   
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTS 292

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471
            +  G      + +M      V   G ++D+  + G L  A+ V  S+  E +   W +L
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNG-LIDMYAKCGCLDLAKRVFKSLR-EHDHISWNSL 350

Query: 472 LGACRKHGEVEFGERLGKILLEMEPQNRRCD------------------DVAKMRKLMKE 513
           +      G V FG  LG+  L +  Q RR                    D A   +L+  
Sbjct: 351 IT-----GVVHFG--LGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHG 403

Query: 514 RGIKTNPGSSMIDVNGVIHEF-RTGD 538
             IK+  GSS    N +I  + + GD
Sbjct: 404 YTIKSGMGSSAPVGNAIITMYAKCGD 429



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQ-REKMRPDRI 398
           MY+ CG    A++VF++   + +FTWN MI  L    R  DA +LF +M  R K   D +
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVK---DSV 108

Query: 399 TFACVLSACAHAGMIDRGLQALTYM 423
           ++  ++S  +  G   R  +  + M
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLM 133


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/663 (32%), Positives = 335/663 (50%), Gaps = 71/663 (10%)

Query: 53  HAVILKSGHFQDHYVSGTLVK--------CHANSRFSNFELALKVFNSVHKPNVFVWNSV 104
           HA   K GH ++ +V   L+         CHA            VF+ +   +   W ++
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARC----------VFDGIVGKDAVTWTAM 220

Query: 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164
           +    E++ P   ++ +S+M     KPN F   +  KA     +   G  +H   VK   
Sbjct: 221 VSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLY 280

Query: 165 CGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF-- 222
             + HV  + + MYA  G +  A  I +     DVI W+ LI  Y +    E A E+F  
Sbjct: 281 DTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLR 340

Query: 223 --KSTKDKNTGSY-----------------------------------NAMISGFARFGR 245
             +S    N  S                                    NA++  +A+   
Sbjct: 341 MMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRN 400

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            E + ++F+ + D +E++W+ II GY + G+ ++AL VF+EM+   +   +   S VL A
Sbjct: 401 MENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRA 460

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CA+  ++   + IH  +++++   D ++  +L+D YAKCG +  A KVFE +   +V +W
Sbjct: 461 CANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSW 520

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
           N++I   A+HGRA +A+ELF +M +  ++ + +TF  +LS C   G++++GL     M  
Sbjct: 521 NSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMM 580

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            + I P +EHY CIV LLGRAG L +A + I  +P  P+  VW ALL +C  H  V  G 
Sbjct: 581 DHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGR 640

Query: 486 RLGKILLEMEPQNRRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
              + +L++EP +                 D+VA  RK M+  G+K   G S +++ G +
Sbjct: 641 YAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEV 700

Query: 532 HEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA 591
           H F  G   HP ++ I  ML+ +  K   EGY P+ + VL D+DEEEK      HSE+LA
Sbjct: 701 HAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLA 760

Query: 592 IAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCN 651
           +A+G   T PG  IR++KNLR C DCH+  K+ISK+ +R+IIVRD  R+HHF  G CSC 
Sbjct: 761 LAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCG 820

Query: 652 DFW 654
           D+W
Sbjct: 821 DYW 823



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 210/486 (43%), Gaps = 51/486 (10%)

Query: 50  KQAHAVILKSGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           +  HA +++ G     D + +  L+  +A  +      A ++F+ + + N   + ++++ 
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYA--KLGPLATARRLFDGMPERNRVSFVTLMQG 122

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
                E    + L+  +     + N F   T+ K     +A      +HA   K G   +
Sbjct: 123 YALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRN 182

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----- 222
             V ++ I  Y+  G V  AR + D     D + W A++  Y +    E A   F     
Sbjct: 183 AFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRM 242

Query: 223 ----------------------------------KSTKDKNTGSYNAMISGFARFGRFEE 248
                                             K+  D       A++  +A+ G  E+
Sbjct: 243 TGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIED 302

Query: 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308
           A  +F  +   D I WS +I  Y +    ++A E+F  M R  + P +F LS VL ACA+
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAM 368
           +  L+ G  IH+   +     +  +G AL+DMYAKC  ++ + ++F  ++     +WN +
Sbjct: 363 IAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTI 422

Query: 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ-MY 427
           I G    G A+DA+ +F +M+   M   ++TF+ VL ACA+   I   +Q  + +++  +
Sbjct: 423 IVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTF 482

Query: 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGE----VEF 483
             D  V     ++D   + G++ +A +V  S+ +E +   W +++ A   HG     +E 
Sbjct: 483 NNDTIV--CNSLIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHGRATNALEL 539

Query: 484 GERLGK 489
            +R+ K
Sbjct: 540 FDRMNK 545



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 179/420 (42%), Gaps = 56/420 (13%)

Query: 42  CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVW 101
           C +S    K  H   +K+ +  + +V G L+  +A  +  + E A  +F  +   +V +W
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYA--KCGDIEDAHAIFEMIPHDDVILW 318

Query: 102 NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           + ++    +  +  +   ++  M+     PN+F+   V +AC+     + G Q+H   +K
Sbjct: 319 SFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIK 378

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
            G   ++ V ++ + MYA    +  + +I      ++ + WN +I GY + G  E A  +
Sbjct: 379 LGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSV 438

Query: 222 F---------------------------------------KSTKDKNTGSYNAMISGFAR 242
           F                                       KST + +T   N++I  +A+
Sbjct: 439 FHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAK 498

Query: 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
            G   +A K+F  + + D ++W++II  Y   G    ALE+F+ M +  IK        +
Sbjct: 499 CGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSL 558

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLG------TALVDMYAKCGRLDMAWKVFED 356
           L+ C S G ++QG+W+      NS+ +D  +       T +V +  + GRL  A K   D
Sbjct: 559 LSVCGSTGLVNQGLWLF-----NSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGD 613

Query: 357 M-KMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHAGMID 414
           +        W A++    +H     A+  +   +   + P D  T+  + +  A AG++D
Sbjct: 614 IPSTPSPMVWRALLSSCVVHKNV--ALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILD 671



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 19/198 (9%)

Query: 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV--LAACASLGALDQGIWIHD 320
           T+S I    +++    EAL+  ++       P+    +C   L  C + G    G  +H 
Sbjct: 10  TFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHA 69

Query: 321 HV-KRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
            V +R  +  +D      L++ YAK G L  A ++F+ M  +   ++  ++ G A+ G  
Sbjct: 70  RVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEF 129

Query: 379 DDAIELFFKMQREK---------------MRPDRITFACVLSACAHAGMIDRGLQALTYM 423
           ++A+ELF ++QRE                +  D    AC + ACA     DR     T +
Sbjct: 130 EEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTAL 189

Query: 424 QQMYGIDPEVEHYGCIVD 441
              Y +   V H  C+ D
Sbjct: 190 IDAYSLCGAVCHARCVFD 207


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/613 (33%), Positives = 318/613 (51%), Gaps = 86/613 (14%)

Query: 38  LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN 97
           L  KC  S   LKQ  + ++ +G  +D + S  L+   A S + + +    +  +   PN
Sbjct: 12  LLEKCK-SISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPN 70

Query: 98  VFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVH 156
            F WN  +R  L+   P   + LY  ++  D +KP+ +TYP +FKAC+     + G ++ 
Sbjct: 71  TFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEIL 130

Query: 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIE 216
            HV+  G   D+ V ++ I +    G ++ AR++ D     D++ WN++I+GY++ G   
Sbjct: 131 GHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAY 190

Query: 217 GAKELFKSTK----------------------DKNTGS-----------------YNAMI 237
            A   ++  K                      D + G                   NA++
Sbjct: 191 EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALM 250

Query: 238 SGFARFGRFEEAR-------------------------------KLFNEMNDKDEITWSA 266
             + + G  E AR                               KLF+EM DKD + W+A
Sbjct: 251 DMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNA 310

Query: 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326
           +I GY      KEAL +FNEMQ   I P +  +   L+AC+ LGALD GIWIH +++++ 
Sbjct: 311 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 370

Query: 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFF 386
           + ++  LGTAL+DMYAKCG++  A +VF+++  +   TW A+I GLA+HG A  AI  F 
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430

Query: 387 KMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446
           +M    + PD +TF  +LSAC H G+++ G +  + M   + + P+++HY C+VDLLGRA
Sbjct: 431 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRA 490

Query: 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN-------- 498
           G L EAEE+I SMP+E +A VW AL  ACR HG V  GER    LL+M+P +        
Sbjct: 491 GLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLA 550

Query: 499 ------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLK 552
                     +  K RKLM++RG++  PG S I+VNG+++EF   D SHPQ ++IY  L 
Sbjct: 551 NMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLI 610

Query: 553 KIIEKLKMEGYSP 565
           ++  +L++   +P
Sbjct: 611 QLTRQLELVECTP 623


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 308/566 (54%), Gaps = 52/566 (9%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY  + K C    A  EG  +  H+  NG    + + +  I MY  F  +N A Q+ D  
Sbjct: 15  TYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQM 74

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELF-------------------------------- 222
            + +VI W  +I  Y KC   + A EL                                 
Sbjct: 75  PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRMLH 134

Query: 223 ----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278
               K   + +    +A+I  FA+ G  E+A  +F+EM   D I W++II G+ ++    
Sbjct: 135 CGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSD 194

Query: 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            ALE+F  M+R      +  L+ VL AC  L  L+ G+  H H+ +     D +L  ALV
Sbjct: 195 VALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLILNNALV 252

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
           DMY KCG L+ A +VF  MK ++V TW+ MI GLA +G + +A++LF  M+    +P+ I
Sbjct: 253 DMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYI 312

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458
           T   VL AC+HAG+++ G      M+++YGI+P  EHYGC++DLLG+AG L +A ++++ 
Sbjct: 313 TIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNE 372

Query: 459 MPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN--------------RRCDDV 504
           M  EP+A  W  LLGACR    +   E   K ++ ++P++              ++ D V
Sbjct: 373 MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSV 432

Query: 505 AKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYS 564
            ++RK M++ GIK  PG S I+VN  IH F  GD SHPQ+ E+   L ++I +L   GY 
Sbjct: 433 EEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYV 492

Query: 565 PNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLI 624
           P ++ VL D++ E+ E + ++HSEKLA+AFG +       IR+ KNLR+C DCH   KL 
Sbjct: 493 PETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLA 552

Query: 625 SKVFKRDIIVRDRVRYHHFRNGKCSC 650
           SK+  R+I++RD +RYHHF++GKCSC
Sbjct: 553 SKLENRNIVIRDPIRYHHFQDGKCSC 578


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/671 (32%), Positives = 347/671 (51%), Gaps = 69/671 (10%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +  H  + K+G   D +V+ +LV  +A  R      A ++F+ + + NV  W +++    
Sbjct: 98  RAVHGHMAKTGAGADMFVATSLV--NAYMRCGAARDARRLFDGMPERNVVTWTALVTGYT 155

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
            +++P   + ++ EM+ +   P+ +T      AC  +     G QVH + +K G      
Sbjct: 156 LNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS 215

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI----------------------D 207
           + +S   +YA  G ++ A +      + +VI W  +I                      D
Sbjct: 216 MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMD 275

Query: 208 GYLK-----------CG---DIEGAKEL----FKSTKDKNTGSYNAMISGFARFGRFEEA 249
           G +            CG   D+   K++    FK   + N    N+ +  + R G  +EA
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEA 335

Query: 250 RKLFNEMNDKDEITWSAIIDGYT------KDGYYK-----EALEVFNEMQRDKIKPRKFV 298
            +LF +M D   ITW+A+I GY       KD         +AL +F +++R  +KP  F 
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358
            S +L+ C+++ AL+QG  IH    ++    D V+ +ALV+MY KCG +  A K F +M 
Sbjct: 396 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP 455

Query: 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
            +   TW +MI G + HG+  +AI+LF +M+   +RP+ ITF  +LSAC++AG+++    
Sbjct: 456 TRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEH 515

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKH 478
               M++ Y I+P V+HYGC++D+  R G + +A   I     EPN A+W +L+  CR H
Sbjct: 516 YFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSH 575

Query: 479 GEVEFGERLGKILLEMEPQ--------------NRRCDDVAKMRKLMKERGIKTNPGSSM 524
           G +E        LLE++P+                R  DVA++RKLMK+  +      S 
Sbjct: 576 GNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSW 635

Query: 525 IDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAP- 583
           I +   ++ FR  D +HPQ  E+Y +L+ ++EK K  GY P  +  L D +++EK  A  
Sbjct: 636 ITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGS 695

Query: 584 -KYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHH 642
            K+HSE+LA+A G + T PGAT+RV KN+ +C DCHS+ KL S +  R+IIVRD  R H 
Sbjct: 696 LKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHK 755

Query: 643 FRNGKCSCNDF 653
           F++G+CSC DF
Sbjct: 756 FKDGRCSCGDF 766



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 7/294 (2%)

Query: 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS----YNAMISG 239
           V +A  +L +G       +  L+   ++ G +  A+ +         G+      ++++ 
Sbjct: 63  VQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNA 122

Query: 240 FARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299
           + R G   +AR+LF+ M +++ +TW+A++ GYT +      LEVF EM      P  + L
Sbjct: 123 YMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTL 182

Query: 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359
              L AC +   +D G  +H +  +        +G +L  +YAK G LD A + F  +  
Sbjct: 183 GATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPE 242

Query: 360 KEVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418
           K V TW  MI   A      +  + LF  M  + + P+  T   V+S C     ++ G Q
Sbjct: 243 KNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQ 302

Query: 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALL 472
              +  ++ G +  +      + L  R G   EA  +   M  + +   W A++
Sbjct: 303 VQAFSFKI-GCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMI 354



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 146/316 (46%), Gaps = 27/316 (8%)

Query: 27  SEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           +EF+  +++ +  T+   +    KQ  A   K G   +  V  + +  +   R    + A
Sbjct: 280 NEFTLTSVMSLCGTRLDLNLG--KQVQAFSFKIGCETNLPVKNSTMYLYL--RKGETDEA 335

Query: 87  LKVFNSVHKPNVFVWNSVLRACLE-----------HNEPWRVISLYSEMVGVDSKPNKFT 135
           +++F  +   ++  WN+++    +            +  ++ ++++ ++     KP+ FT
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           + ++   CS   A ++G Q+HA  +K+G   DV V S+ + MY   GC+  A +   +  
Sbjct: 396 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMP 455

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTK----DKNTGSYNAMISGFARFGRFEEARK 251
               + W ++I GY + G  + A +LF+  +      N  ++ +++S  +  G  EEA  
Sbjct: 456 TRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEH 515

Query: 252 LFNEMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            F+ M  +  I      +  +ID + + G  ++A   F+ ++R   +P + + S ++A C
Sbjct: 516 YFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FSFIKRTGFEPNEAIWSSLVAGC 572

Query: 307 ASLGALDQGIWIHDHV 322
            S G ++   +  D +
Sbjct: 573 RSHGNMELAFYAADKL 588


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/642 (33%), Positives = 344/642 (53%), Gaps = 82/642 (12%)

Query: 30  SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKV 89
           ++K IL +L   C+ S + L++ HA ++ SG      ++  L+   A S   +   A  +
Sbjct: 3   NEKAILALLQ-GCN-SLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLL 60

Query: 90  FNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEA 148
           F+ +  P    WNS++R   + + P   I  Y++MV    S P+ FT+  V KAC   +A
Sbjct: 61  FHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKA 120

Query: 149 DKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDG 208
           +++             C +VH                    ++  G  +DVI    L+  
Sbjct: 121 ERK-------------CKEVH------------------GSVIRCGYDADVIVCTNLV-- 147

Query: 209 YLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAII 268
             KC                    Y+AM       G    AR++F++M  +D + W+A+I
Sbjct: 148 --KC--------------------YSAM-------GLVCIARQVFDKMPARDLVAWNAMI 178

Query: 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC 328
             +++ G ++EAL+ +N+M+ + +    F L  ++++CA LGAL+ G+ +H   + N + 
Sbjct: 179 SCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLD 238

Query: 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKM 388
               +G AL+DMYAKCG LD A  +F+ M+ K++FTWN+MI G  +HGR  +AI  F +M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448
              +++P+ +TF  +L  C+H G++  G++    M   + + PEV+HYGC+VDL GRAG 
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE----RLGK----------ILLEM 494
           L +A E++S+     ++ +W  LLG+C+ H  V  GE    RL +          +L  +
Sbjct: 359 LDKALEIVSN-SSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATI 417

Query: 495 EPQNRRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKI 554
               +    VA+MRK++K +G KT PG S I++   +H+F   D SH    E+Y  L+++
Sbjct: 418 YAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREV 477

Query: 555 IEKLKMEGYSPNSSQVLFDI--DEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLR 612
           I +    GY  + S    D+    E  +T+  YHSEKLAIAFG   T  G  IR++KNLR
Sbjct: 478 IHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLR 537

Query: 613 VCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           VC DCHS  K +S  F R+IIVRDRVR+HHF+ G+CSCND+W
Sbjct: 538 VCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/634 (32%), Positives = 332/634 (52%), Gaps = 55/634 (8%)

Query: 76  ANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFT 135
           A S+  N     K F+ +   ++  WN+++ A + + +  R    +  M+     P +  
Sbjct: 4   AYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVG 63

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
                 AC+       G  +   ++  G+  +  V+++ + MY   G    A  +    S
Sbjct: 64  ISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMS 123

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELFK----------------------STKDKNTGSY 233
             DV+ W+A++  Y + G    A  LF+                      S  D  +G+ 
Sbjct: 124 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGAL 183

Query: 234 -----------------NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                             A+++ + + GR E A + F ++ +K+ + WSAI   Y ++  
Sbjct: 184 MHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDR 243

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHD--HVKRNSICVDAVLG 334
            ++A+ V + M  + + P       VL ACA++ AL QG  IH+   V    +  D  + 
Sbjct: 244 NRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVL 303

Query: 335 TALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMR 394
           TALV+MY+KCG L +A  +F+ +   ++  WN++I   A HG+ + A+ELF +M+ E ++
Sbjct: 304 TALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQ 363

Query: 395 PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454
           P  ITF  VL AC+HAGM+D+G +        +GI PE EH+GC+VDLLGRAG++ ++E+
Sbjct: 364 PTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSED 423

Query: 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------R 500
           ++  MP EP+   W A LGACR +  ++      + L +++P+ R              R
Sbjct: 424 LLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGR 483

Query: 501 CDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKM 560
             DVA+MR+ M+        G S I+V   +HEF +GD  HP++ EI+  L+++ + +K 
Sbjct: 484 WSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKE 543

Query: 561 EGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSA 620
            GY P++  VL D+ +E KE    YHSEKLA+AF  + T  G+ IRV+KNLRVC DCH+A
Sbjct: 544 AGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTA 603

Query: 621 TKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           +K ISK+  R+I+VRD  R+H F+NG CSC D+W
Sbjct: 604 SKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 41/348 (11%)

Query: 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKST--KDKNTGS 232
           +  Y+  G +   R+  D+   +D++ WNALI  Y+   D +     F+    +  N G 
Sbjct: 2   LSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGE 61

Query: 233 Y-------------------------------------NAMISGFARFGRFEEARKLFNE 255
                                                  A++S + + G   +A  +F  
Sbjct: 62  VGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLR 121

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315
           M+ +D + WSA++  Y ++G+ +EAL +F +M  D + P K  L   L ACASLG L  G
Sbjct: 122 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSG 181

Query: 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMH 375
             +H  V+   I    V+GTALV++Y KCGR++ A + F  +  K V  W+A+    A +
Sbjct: 182 ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARN 241

Query: 376 GRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQM-YGIDPEVE 434
            R  DAI +  +M  E + P+  TF  VL ACA    + +G +     Q +  G++ +V 
Sbjct: 242 DRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVY 301

Query: 435 HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
               +V++  + G LA A ++   +    +  +W +L+    +HG+ E
Sbjct: 302 VLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTE 348



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 4/240 (1%)

Query: 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295
           M+S +++ G     RK F+EM   D ++W+A+I  Y  +  +      F  M    I P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355
           +  +S  L+AC     +  G  I   +    I  ++++ TALV MY K G    A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 356 DMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415
            M  ++V  W+AM+   A +G   +A+ LF +M  + + P+++T    L ACA  G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 416 GLQALTYMQ-QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           G  AL + + +  GI   V     +V+L G+ G +  A E    + +E N   W A+  A
Sbjct: 181 G--ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA 237


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/632 (34%), Positives = 329/632 (52%), Gaps = 83/632 (13%)

Query: 44  TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS-NFELALKVFNSVHKPNVFVWN 102
           T   HL+Q HA++L++   ++  V    +   A S    +   + +VF+    P +   N
Sbjct: 22  TGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLSHCN 81

Query: 103 SVLRACLEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVK 161
           +++RA      P     L+  +    S P N  +     K C  +     G+Q+H     
Sbjct: 82  TMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHG---- 137

Query: 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKEL 221
                                      +I  DG  SD +    L+D Y  C +       
Sbjct: 138 ---------------------------KIFSDGFLSDSLLMTTLMDLYSTCEN------- 163

Query: 222 FKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEAL 281
             ST                      +A K+F+E+  +D ++W+ +   Y ++   ++ L
Sbjct: 164 --ST----------------------DACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVL 199

Query: 282 EVFNEMQRDK---IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338
            +F++M+ D    +KP        L ACA+LGALD G  +HD +  N +     L   LV
Sbjct: 200 VLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLV 259

Query: 339 DMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI 398
            MY++CG +D A++VF  M+ + V +W A+I GLAM+G   +AIE F +M +  + P+  
Sbjct: 260 SMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQ 319

Query: 399 TFACVLSACAHAGMIDRGLQALTYMQQ-MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457
           T   +LSAC+H+G++  G+     M+   + I P + HYGC+VDLLGRA  L +A  +I 
Sbjct: 320 TLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIK 379

Query: 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDD 503
           SM M+P++ +W  LLGACR HG+VE GER+   L+E++ +                + + 
Sbjct: 380 SMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEK 439

Query: 504 VAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGY 563
           V ++R LMKE+ I T PG S I++ G +HEF   D SHP+ +EIY ML +I ++LK+ GY
Sbjct: 440 VTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGY 499

Query: 564 SPNSSQVLFDID-EEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
               +  L +++ EEEK  A +YHSEKLAIAFG + T PG TIRV KNLR C DCH+  K
Sbjct: 500 VAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAK 559

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +S V+ R +IVRDR R+HHF+ G CSCNDFW
Sbjct: 560 FVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/614 (36%), Positives = 331/614 (53%), Gaps = 65/614 (10%)

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+ LR   +  +    ++LY  M+     PN FT+P + K+C+         Q+HAHV+
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           + G   D + +SS I  YA     + AR++ D+   +  IC+NA+I GY        A  
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDE-MPNPTICYNAMISGYSFNSKPLHAVC 140

Query: 221 LFKSTK---------DKNTGSY-------------------------------------N 234
           LF+  +         D N  +                                      N
Sbjct: 141 LFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVAN 200

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294
           ++++ + + G  E ARK+F+EM  +D ITW+A+I GY ++G+ +  LEV++EM+   +  
Sbjct: 201 SLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSA 260

Query: 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVF 354
               L  V++ACA+LGA   G  +   ++R     +  L  ALV+MYA+CG L  A +VF
Sbjct: 261 DAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVF 320

Query: 355 EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414
           +    K V +W A+IGG  +HG  + A+ELF +M    +RPD+  F  VLSAC+HAG+ D
Sbjct: 321 DRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTD 380

Query: 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474
           RGL+    M++ YG+ P  EHY C+VDLLGRAG L EA  +I SM ++P+ AVW ALLGA
Sbjct: 381 RGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGA 440

Query: 475 CRKHGEVEFGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNP 520
           C+ H   E  E   + ++E+EP N                 + V+++R +M+ER ++ +P
Sbjct: 441 CKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDP 500

Query: 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKE 580
           G S ++  G ++ F +GD SHPQ K+IY ML + +E L  E + PN          EE  
Sbjct: 501 GYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDE-LESLVKEVHPPNEK---CQGRSEELL 556

Query: 581 TAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRY 640
                HSEKLAIAF  +NT  G  I V+KNLRVC DCH   KL+SK+  R  IVRD  R+
Sbjct: 557 IGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRF 616

Query: 641 HHFRNGKCSCNDFW 654
           HHFR+G CSC D+W
Sbjct: 617 HHFRDGICSCKDYW 630



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 53/403 (13%)

Query: 51  QAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLE 110
           Q HA ++++G   D Y   +L+  +A     +   A KVF+ +  P +  +N+++     
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHH--ARKVFDEMPNPTI-CYNAMISGYSF 131

Query: 111 HNEPWRVISLYSEM-------VGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNG 163
           +++P   + L+ +M       + VD   N  T  ++   CS+      GV +H   V+ G
Sbjct: 132 NSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFG 191

Query: 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK 223
              D+ V +S + MY   G V  AR++ D+    D+I WNA+I GY + G      E++ 
Sbjct: 192 FVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYS 251

Query: 224 STKDK-----------------NTGSY----------------------NAMISGFARFG 244
             K                   N G+                       NA+++ +AR G
Sbjct: 252 EMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCG 311

Query: 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304
               AR++F+   +K  ++W+AII GY   G+ + ALE+F+EM    ++P K V   VL+
Sbjct: 312 NLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLS 371

Query: 305 ACASLGALDQGI-WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EV 362
           AC+  G  D+G+ +  +  ++  +       + +VD+  + GRL+ A  + + MK+K + 
Sbjct: 372 ACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDG 431

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
             W A++G   +H  A+ A EL F+   E + P  I +  +LS
Sbjct: 432 AVWGALLGACKIHKNAEIA-ELAFQHVVE-LEPTNIGYYVLLS 472


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 302/529 (57%), Gaps = 47/529 (8%)

Query: 48  HLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRA 107
           HL Q H  +L     QD+      +    +   S++  A  +F++   P++ ++N+ ++A
Sbjct: 39  HLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSY--AFSIFSNKTHPDLRLYNTAIKA 96

Query: 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD 167
             + + P   I LY+ +     +P+ ++ P+V KA     A + G Q+H   V + L  D
Sbjct: 97  LSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMD 156

Query: 168 VHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227
           V+V +S IQMY+                                CG +  A++LF     
Sbjct: 157 VNVATSLIQMYS-------------------------------SCGFVSDARKLFDFVGF 185

Query: 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEM 287
           K+   +NAM++G+ + G  + ARK+FNEM  ++ I+W+ +I GY +     EA+E+F +M
Sbjct: 186 KDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM 245

Query: 288 QRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347
           Q ++++P +  +  VL+ACA LGAL+ G WIH++++++ +C    L  AL+DMYAK G +
Sbjct: 246 QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNI 305

Query: 348 DMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407
             A +VFE+MK K V TW+ +I  LA+HG   +AI++F +M++ K+RP+ +TF  +LSAC
Sbjct: 306 RRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSAC 365

Query: 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467
           +H GM+D G      MQ MY I+P++EHYGC++DLL RAGYL EA++++  MP E NA +
Sbjct: 366 SHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMI 425

Query: 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKE 513
           W +LL A   H + E  +   K L ++EP N               + ++   +RKLM+ 
Sbjct: 426 WGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRN 485

Query: 514 RGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
            G+K  PG S+I++N +++EF  GD S  QV EIY +L KII +LKM G
Sbjct: 486 AGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKMAG 534


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 342/604 (56%), Gaps = 33/604 (5%)

Query: 84  ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143
           E A ++F+ +   +V  WNS++   + +    R + +Y +M+ +    +  T  +V   C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWN 203
           + +     G  VH+  +K+     ++  ++ + MY+  G ++ A ++ +   + +V+ W 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 204 ALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEARKLFNEMN-- 257
           ++I GY + G  +GA  L +  + +    +  +  +++   AR G  +  + + + +   
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 258 --DKDEITWSAIIDGYTKDGYYKEALEVFNEM----------QRDKIKPRKFVLSCVLAA 305
             + +    +A++D YTK G    A  VF+ M             ++KP    ++C+L A
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPA 441

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           CASL AL++G  IH ++ RN    D  +  ALVD+Y KCG L +A  +F+ +  K++ +W
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425
             MI G  MHG  ++AI  F +M+   + PD ++F  +L AC+H+G++++G +    M+ 
Sbjct: 502 TVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 426 MYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGE 485
            + I+P++EHY C+VDLL R G L++A E I ++P+ P+A +W ALL  CR + ++E  E
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAE 621

Query: 486 RLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVI 531
           ++ + + E+EP+N               + ++V +MR+ + ++G++ NPG S I++ G +
Sbjct: 622 KVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKV 681

Query: 532 HEFRTG-DGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKL 590
           + F +G + SHP  K+I  +LKK+  K+K EGY P +   L + DE +KE A   HSEKL
Sbjct: 682 NLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKL 741

Query: 591 AIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSC 650
           A+AFG +   P  T+RV KNLRVC DCH   K +SK  +R+I++RD  R+HHF+NG CSC
Sbjct: 742 AMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSC 801

Query: 651 NDFW 654
             FW
Sbjct: 802 RGFW 805



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 184/373 (49%), Gaps = 30/373 (8%)

Query: 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194
           TY +V + C+ +++  +G +VH+ +  N +  D  +    + +YA  G + + R++ D  
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFN 254
            K +V  WN ++  Y K GD + +  LFK   +K        I G     R E A +LF+
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG-------IEG----KRPESASELFD 209

Query: 255 EMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314
           ++ D+D I+W+++I GY  +G  +  LE++ +M    I      +  VL  CA+ G L  
Sbjct: 210 KLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAM 374
           G  +H    +++          L+DMY+KCG LD A +VFE M  + V +W +MI G   
Sbjct: 270 GKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434
            GR+D AI L  +M++E ++ D +    +L ACA +G +D G     Y++     + E  
Sbjct: 330 DGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN---NMESN 386

Query: 435 HYGC--IVDLLGRAGYLAEAEEVISSM-------------PMEPNAAVWEALLGACRKHG 479
            + C  ++D+  + G +  A  V S+M              ++P++     +L AC    
Sbjct: 387 LFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLS 446

Query: 480 EVEFGERL-GKIL 491
            +E G+ + G IL
Sbjct: 447 ALERGKEIHGYIL 459



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 29/367 (7%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           K  H++ +KS   +    S TL+  +  S+  + + AL+VF  + + NV  W S++    
Sbjct: 271 KAVHSLAIKSTFERRINFSNTLLDMY--SKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
                   I L  +M     K +     ++  AC+ + +   G  VH ++  N +  ++ 
Sbjct: 329 RDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK------------CGD--- 214
           V ++ + MY   G ++ A  +       D+I WN +I G LK            C     
Sbjct: 389 VCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI-GELKPDSRTMACILPACASLSA 447

Query: 215 IEGAKE----LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270
           +E  KE    + ++    +    NA++  + + G    AR LF+ +  KD ++W+ +I G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISG 507

Query: 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330
           Y   GY  EA+  FNEM+   I+P +     +L AC+  G L+QG W   ++ +N   ++
Sbjct: 508 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-WRFFYIMKNDFNIE 566

Query: 331 AVLG--TALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAMH---GRADDAIEL 384
             L     +VD+ ++ G L  A++  E + +  +   W A++ G  ++     A+   E 
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAER 626

Query: 385 FFKMQRE 391
            F+++ E
Sbjct: 627 VFELEPE 633



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 128/300 (42%), Gaps = 60/300 (20%)

Query: 258 DKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317
           D+    ++A I  + + G  + A+E+    Q+ +++ + +  S VL  CA   +L  G  
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTY--SSVLQLCAGSKSLTDGKK 120

Query: 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377
           +H  +K N++ VD VLG  LV +YA CG L    +VF+ M+ K V+ WN M+   A  G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 378 ADDAIELFFKMQR---EKMRP-------------DRITFACVLSACAHAGMIDRGLQALT 421
             ++I LF  M     E  RP             D I++  ++S     G+ +RGL+   
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLE--I 238

Query: 422 YMQQMY-GIDPEVEH-----YGC------------------------------IVDLLGR 445
           Y Q MY GID ++        GC                              ++D+  +
Sbjct: 239 YKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSK 298

Query: 446 AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505
            G L  A  V   M  E N   W +++    + G  +   RL   L +ME +  + D VA
Sbjct: 299 CGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRL---LQQMEKEGVKLDVVA 354


>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
 gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
          Length = 587

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/443 (41%), Positives = 264/443 (59%), Gaps = 41/443 (9%)

Query: 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTK---------DGYYKEALEVFN 285
           A++  FAR GR    R++F+ +   D   W+A++  Y +                LE+F 
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222

Query: 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCG 345
            M    I+P +  L  V+ AC  LGA+  G+W                  ALV+MYA CG
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHGVW------------------ALVEMYAGCG 264

Query: 346 RLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405
           RLD+A +VF     ++   +NAM+ GLA+HG    A+ L  +M    +  D +T   V+ 
Sbjct: 265 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 324

Query: 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNA 465
           ACAHAG++D GL     M+  +GI+P +EHYGC++D+L RAG L  AE++I  M + PNA
Sbjct: 325 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNA 384

Query: 466 AVWEALLGACRKHGEVEFGERLGKILLEMEP--------------QNRRCDDVAKMRKLM 511
           A++ +L+ AC  HG++E GE++   L+ +EP              +  R +D  K RK M
Sbjct: 385 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 444

Query: 512 KERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVL 571
           K  GI  NPGSS++D+NGV+HEF  GD +HP  KEIY M+++I  +L   G   ++S  L
Sbjct: 445 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 504

Query: 572 FDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRD 631
           FD++EE+K     YHSE+LAIAF  I ++PGA IR+IKNLRVC DCH + KL+S+V+ R+
Sbjct: 505 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 564

Query: 632 IIVRDRVRYHHFRNGKCSCNDFW 654
           I++RDR R+HHFR+G CSC DFW
Sbjct: 565 IVMRDRTRFHHFRDGVCSCGDFW 587



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 140/320 (43%), Gaps = 48/320 (15%)

Query: 118 ISLYSEMVGVDS----KPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173
           +SLY+ +    S    +PN FTYP +F+A     A          +  +    D  + ++
Sbjct: 104 LSLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAA 163

Query: 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGY--LKCGDIEGAK-------ELF-- 222
            + ++A  G +   R++ D  +  D+  WNAL+  Y  L+  D+  A        ELF  
Sbjct: 164 LLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVR 223

Query: 223 -----------------KSTKDKNTGSYN--AMISGFARFGRFEEARKLFNEMNDKDEIT 263
                             +  +    S+   A++  +A  GR + A ++F   +D+D   
Sbjct: 224 MLSLAIEPNEITLVAVIGACGELGAVSHGVWALVEMYAGCGRLDLAEQVFAAASDRDTRC 283

Query: 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323
           ++A++ G    G+ + AL + + M    +      +  V+ ACA  G +D+G+   D+  
Sbjct: 284 YNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGL---DYFD 340

Query: 324 RNSI--CVDAVLG--TALVDMYAKCGRLDMAWKVFEDMKM-KEVFTWNAMIGGLAMHGRA 378
           R  I   ++  +     ++DM ++ GRL+ A K+  +M +      + ++I    +HG+ 
Sbjct: 341 RMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGK- 399

Query: 379 DDAIELFFKMQREKMR--PD 396
              +EL  KM  E MR  PD
Sbjct: 400 ---LELGEKMIAELMRLEPD 416



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA-MHGR--------ADD 380
           D VLG AL+ ++A+CGR+    +VF+ +   ++  WNA++   A +  R        AD 
Sbjct: 157 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADA 216

Query: 381 AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423
            +ELF +M    + P+ IT   V+ AC   G +  G+ AL  M
Sbjct: 217 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWALVEM 259



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 39/246 (15%)

Query: 88  KVFNSVHKPNVFVWNSVLRA---------CLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138
           +VF+ +  P++  WN++L A             +    ++ L+  M+ +  +PN+ T   
Sbjct: 179 RVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVA 238

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
           V  AC    A   GV                   + ++MYA  G ++ A Q+    S  D
Sbjct: 239 VIGACGELGAVSHGVW------------------ALVEMYAGCGRLDLAEQVFAAASDRD 280

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG----SYNAMISGFARFGRFEEARKLFN 254
             C+NA++ G    G    A  L              +  +++   A  G  +E    F+
Sbjct: 281 TRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 340

Query: 255 EMNDKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309
            M  +  I      +  +ID  ++ G    A ++ +EM    I P   +   ++ AC   
Sbjct: 341 RMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEML---IVPNAAIYRSLIRACGIH 397

Query: 310 GALDQG 315
           G L+ G
Sbjct: 398 GKLELG 403


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 312/572 (54%), Gaps = 54/572 (9%)

Query: 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS 195
           Y     AC   +A  EG QVHAH+VK      V++ +  I +Y   G ++ AR +LD   
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 196 KSDVICWNALIDGYLKCGDIEGAKELF--------------------------------- 222
           + +V+ W A+I GY + G    A ELF                                 
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 223 ------KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276
                 K+  + +    ++++  + + G  +EARK+F+ + ++D ++ +AII GY + G 
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA 336
             EAL++F ++    ++      + +L + + L +L+ G  +H  + R  +    VL  +
Sbjct: 224 DDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNS 283

Query: 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396
           L+DMY+KCG+L  + +VF++M  +   +WNAM+ G   HG   + ++LF  M  E+++PD
Sbjct: 284 LIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMT-EEVKPD 342

Query: 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456
            +T   VLS C+H G++D GL     + +       + HYGC++DLLGR+G L +A ++I
Sbjct: 343 SVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLI 402

Query: 457 SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCD 502
             MP EP  A+W +LLGACR H  V  GE + + LL+MEP N                  
Sbjct: 403 EHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWK 462

Query: 503 DVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEG 562
           DV ++RKLM E  +   P  S I ++ VIH F + +  HP+ K+I   +K++   +K  G
Sbjct: 463 DVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAG 522

Query: 563 YSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATK 622
           + P+ S VL D+D+E+KE     HSEKLAI FG +NT PG TI+V+KNLR+C DCH+  K
Sbjct: 523 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAK 582

Query: 623 LISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            +SKV+ R+I +RD+ R+H  ++G C+C D+W
Sbjct: 583 FVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 166/367 (45%), Gaps = 44/367 (11%)

Query: 50  KQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACL 109
           +Q HA ++K+ +    Y++  L+  +   R    + A  V + + + NV  W +++    
Sbjct: 61  RQVHAHMVKARYRPPVYLATRLIILYV--RCGALDDARNVLDGMPERNVVSWTAMISGYS 118

Query: 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH 169
           +       + L+  M+    K N+FT  TV  +C + ++ ++  QVH+ VVK      + 
Sbjct: 119 QSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMF 178

Query: 170 VKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK- 228
           V SS + MY   G + +AR++ D   + D +   A+I GY + G  + A +LF+      
Sbjct: 179 VGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSG 238

Query: 229 ---------------------NTGS-----------------YNAMISGFARFGRFEEAR 250
                                N G                   N++I  +++ G+   +R
Sbjct: 239 MQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSR 298

Query: 251 KLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310
           ++F+ M  +  I+W+A++ GY + G  +E +++F  M  +++KP    L  VL+ C+  G
Sbjct: 299 RVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMT-EEVKPDSVTLLAVLSGCSHGG 357

Query: 311 ALDQGIWIHDH-VKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAM 368
            +D+G+ I D  VK  +  +       ++D+  + G+L  A  + E M  +     W ++
Sbjct: 358 LVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSL 417

Query: 369 IGGLAMH 375
           +G   +H
Sbjct: 418 LGACRVH 424



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 143/292 (48%), Gaps = 21/292 (7%)

Query: 26  TSEFSQKTILDILNTKC--HTSWQHLKQAHAVILKSGHFQDH-YVSGTLVKCHANSRFSN 82
            +EF+  T+L    T C  H S Q ++Q H++++K+ +F+ H +V  +L+  +  S   N
Sbjct: 140 ANEFTLATVL----TSCPVHQSIQQVEQVHSLVVKT-NFESHMFVGSSLLDMYGKS--GN 192

Query: 83  FELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142
            + A KVF+ + + +     +++    +       + L+ ++     + N  T+ T+  +
Sbjct: 193 IQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTS 252

Query: 143 CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICW 202
            S   +   G QVH  +++  L   + +++S I MY+  G +  +R++ D+  +   I W
Sbjct: 253 LSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISW 312

Query: 203 NALIDGYLKCGDIEGAKELFKSTKDK---NTGSYNAMISGFARFGRFEEARKLFN----E 255
           NA++ GY + G  +   +LF++  ++   ++ +  A++SG +  G  +E   +F+    E
Sbjct: 313 NAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKE 372

Query: 256 MNDKDEIT-WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306
            N    I  +  +ID   + G  ++AL++   M     +P   +   +L AC
Sbjct: 373 QNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHM---PFEPTPAIWGSLLGAC 421


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/650 (33%), Positives = 330/650 (50%), Gaps = 91/650 (14%)

Query: 25  PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFE 84
           P S      IL +L++   T    L  A A +L S    D     TLV     S      
Sbjct: 57  PPSTLLSNRILHLLSSHPAT----LPDALA-LLSSLPSTDVCSYNTLVAALGRSP-RGLA 110

Query: 85  LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMV------GVDSKPNKFTYPT 138
            A  +F+ + + + F W++++ A   H +P   +++Y  M+      GVD   N+FT  +
Sbjct: 111 SARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVD---NEFTASS 167

Query: 139 VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD 198
              A +     + G ++H HVV+ G+                                +D
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGI-------------------------------DAD 196

Query: 199 VICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258
            + W+AL D Y KCG                               R ++AR +F+ M  
Sbjct: 197 AVVWSALADMYAKCG-------------------------------RVDDARSVFDRMPV 225

Query: 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWI 318
           +D ++W+A+++ Y       E   +F  M R  I+P +F  + VL ACA   +   G  +
Sbjct: 226 RDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQV 285

Query: 319 HDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378
           H  + ++         +ALV MY+K G +  A +VF  M   ++ +W AMI G A +G+ 
Sbjct: 286 HGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQP 345

Query: 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438
           D+A+  F  + R   RPD +TF  VLSACAHAG++D+GL     ++  YGI+   +HY C
Sbjct: 346 DEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYAC 405

Query: 439 IVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498
           ++DLL R+G    AEE+I++M ++PN  +W +LLG CR H  V       + L E+EP+N
Sbjct: 406 VIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPEN 465

Query: 499 RRC--------------DDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544
                            D+V   R++M+ +GI   P SS I+V   +H F  GD  HPQ 
Sbjct: 466 PATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQA 525

Query: 545 KEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGAT 604
           +++Y +LKK+  K++ EGY  ++  VL D+++E+K+    YHSE+LA+AFG I T  GA 
Sbjct: 526 EQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAP 585

Query: 605 IRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
           I+V KNLR+C DCH+  KLISK+ +R+IIVRD  R+HHF+NG CSC D+W
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/655 (31%), Positives = 334/655 (50%), Gaps = 56/655 (8%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H  ++K G      V   L+  +A S  +  E AL VF+ + + ++  WNS++  C  + 
Sbjct: 7   HGYLVKYGFGAQCAVCNALISFYAKS--NRIEDALMVFDEMPQRDIISWNSIIGGCASNG 64

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
              + + L+  M     + +  T  +V  AC  +     G  VH + V+ GL  +  + +
Sbjct: 65  LYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGN 124

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFK--------- 223
           + + MY+         +I  +  + +V+ W A+I  Y + G  +    LF+         
Sbjct: 125 ALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRP 184

Query: 224 ------STKDKNTGS------------------------YNAMISGFARFGRFEEARKLF 253
                 S  D   G+                         NA++  + + G  EEAR +F
Sbjct: 185 DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIF 244

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + +  KD I+W+ +I GY++     EA  +FNEM   +++P    ++C+L A ASL +L+
Sbjct: 245 DHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSSLE 303

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
           +G  +H +  R     D  +  ALVDMY KCG L +A ++F+ +  K + +W  MI G  
Sbjct: 304 RGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYG 363

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           MHGR  DAI LF +M+   ++PD  +F+ +L AC+H+G+ D G +    M+  + I+P++
Sbjct: 364 MHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKL 423

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           +HY C+VDLL   G L EA E I +MP+EP++++W +LL  CR H  V+  E++ +++ E
Sbjct: 424 KHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFE 483

Query: 494 MEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EP+N               R + V K++  +  RG++ N G S I+V G  H F   + 
Sbjct: 484 LEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENR 543

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
           +HPQ   I   L  +  +++ EG+ P     L   D+   + A   HS KLA+AFG +N 
Sbjct: 544 NHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNL 603

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
             G  IRV KN RVC  CH A K ISK+  R+II+RD  R+HHF  G+CSC  +W
Sbjct: 604 SQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 179/412 (43%), Gaps = 64/412 (15%)

Query: 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210
           +G+ VH ++VK G      V ++ I  YA    +  A  + D+  + D+I WN++I G  
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 211 KCGDIEGAKELF---------------------------------------KSTKDKNTG 231
             G  + A ELF                                       ++     T 
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDK 291
             NA++  ++    +    K+F  M  K+ ++W+A+I  YT+ G++ +   +F EM  + 
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 292 IKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351
           I+P  F ++  L A A   +L  G  +H +  RN I     +  AL++MY KCG ++ A 
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411
            +F+ +  K+  +WN +IGG +    A++A  LF +M  + +RP+ +T AC+L A A   
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLS 300

Query: 412 MIDRGLQALTY-MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
            ++RG +   Y +++ Y  D  V +   +VD+  + G L  A  +   M    N   W  
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVAN--ALVDMYVKCGALLLARRLF-DMLTNKNLISWTI 357

Query: 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGIKTNPGS 522
           ++     HG                    R  D   + + MK  GI+ + GS
Sbjct: 358 MIAGYGMHG--------------------RGRDAIALFEQMKGSGIQPDAGS 389



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 180/409 (44%), Gaps = 48/409 (11%)

Query: 28  EFSQKTILDILNTKCHTSWQHLKQA-HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELA 86
           E    T+L ++     + +  +    H   +++G   +  +   L+  ++N   S++   
Sbjct: 82  ELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNC--SDWRST 139

Query: 87  LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSIT 146
            K+F ++ + NV  W +++ +        +V  L+ EM     +P+ F   +   A +  
Sbjct: 140 NKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGN 199

Query: 147 EADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALI 206
           E+ K G  VH + ++NG+   + V ++ ++MY   G + +AR I D  +K D I WN LI
Sbjct: 200 ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI 259

Query: 207 DGYLKCGDIEGAKELFKST-------------------------KDKNTGSY-------- 233
            GY +      A  LF                            + +   +Y        
Sbjct: 260 GGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLE 319

Query: 234 -----NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288
                NA++  + + G    AR+LF+ + +K+ I+W+ +I GY   G  ++A+ +F +M+
Sbjct: 320 DNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMK 379

Query: 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG--TALVDMYAKCGR 346
              I+P     S +L AC+  G  D+G W   +  RN   ++  L     +VD+    G 
Sbjct: 380 GSGIQPDAGSFSAILYACSHSGLRDEG-WRFFNAMRNEHRIEPKLKHYACMVDLLCHTGN 438

Query: 347 LDMAWKVFEDMKMK-EVFTWNAMIGGLAMHGR---ADDAIELFFKMQRE 391
           L  A++  E M ++ +   W +++ G  +H     A+   E+ F+++ E
Sbjct: 439 LKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPE 487


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 308/533 (57%), Gaps = 48/533 (9%)

Query: 41  KCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFV 100
           +C T  Q +KQ H+ ++ S    D + +G ++   A S  ++   A K+F S+     F+
Sbjct: 19  QCRTMSQ-IKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFI 77

Query: 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVV 160
           WN+++R  +E NE    +SLY  M+     PN +T+  V +AC  T+    G+  HA V+
Sbjct: 78  WNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRAC--TDNSPVGLASHAQVI 135

Query: 161 KNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKE 220
           K G                                +S     N LI  Y     +E A++
Sbjct: 136 KLGW-------------------------------ESYDFVLNGLIHLYANWSSVEAARK 164

Query: 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280
           LF  +  ++  ++ A+I+G+ + G  E AR+LF++M +++E++WSA+I GY   G ++EA
Sbjct: 165 LFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREA 224

Query: 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340
           LE+FN++Q   ++P    +   L AC+ LG+LD G WIH +V RN   +D VLGTALVDM
Sbjct: 225 LELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDM 284

Query: 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400
           YAKCG +++A  VFE M  K+ F + ++I GLA HG++ DAI+LF +MQ EK+ P+ +TF
Sbjct: 285 YAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTF 344

Query: 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460
            CVLSAC+  G++D GL+    M  +YGI+P V+HYGC+VDLLGRAG L EA+ ++  MP
Sbjct: 345 ICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMP 404

Query: 461 MEPNAAVWEALLGACRKHGEVEFGERLGKILLE--------------MEPQNRRCDDVAK 506
           MEP++ V  ALL +CR HG+VE G+   + L+E              M   + + D V K
Sbjct: 405 MEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVK 464

Query: 507 MRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLK 559
           +RK M  + +K  PG S I+++G + EF  GD S+ +V+++ L+L  I   LK
Sbjct: 465 VRKEMGAKKVKKVPGCSSIEIDGSVSEFIAGDMSYLRVEDVMLVLLGIDNHLK 517



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 27/197 (13%)

Query: 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM--AWKVFEDMKM 359
           +L  C ++  + Q   +H H+  ++  +D      ++ ++A     D+  A+K+F  +  
Sbjct: 16  LLEQCRTMSQIKQ---MHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPH 72

Query: 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSAC---------AHA 410
           +  F WN +I           A+ L+  M +    P+  TF+ VL AC         +HA
Sbjct: 73  RTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHA 132

Query: 411 GMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEA 470
            +I  G ++  ++  + G+     ++  +           EA   +  +    +   W A
Sbjct: 133 QVIKLGWESYDFV--LNGLIHLYANWSSV-----------EAARKLFDVSTCRDVITWTA 179

Query: 471 LLGACRKHGEVEFGERL 487
           L+    K G VEF   L
Sbjct: 180 LINGYVKSGHVEFAREL 196


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 308/577 (53%), Gaps = 70/577 (12%)

Query: 59  SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVI 118
           +G  +D + S  L+   A S + + +    +  +   PN F WN  +R  L+   P   +
Sbjct: 4   TGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAV 63

Query: 119 SLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQM 177
            LY  ++  D +KP+ +TYP +FKAC+     + G ++  HV+  G   D+ V ++ I +
Sbjct: 64  VLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHL 123

Query: 178 YACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTK----------- 226
               G ++ AR++ D     D++ WN++I+GY++ G    A   ++  K           
Sbjct: 124 LVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTM 183

Query: 227 -----------DKNTGS-----------------YNAMISGFARFGRFEEARK------- 251
                      D + G                   NA++  + + G  E ARK       
Sbjct: 184 IGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTN 243

Query: 252 ---------LFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302
                    LF+EM DKD + W+A+I GY      KEAL +FNEMQ   I P +  +   
Sbjct: 244 KTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 303

Query: 303 LAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362
           L+AC+ LGALD GIWIH +++++ + ++  LGTAL+DMYAKCG++  A +VF+++  +  
Sbjct: 304 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 363

Query: 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTY 422
            TW A+I GLA+HG A  AI  F +M    + PD +TF  +LSAC H G+++ G +  + 
Sbjct: 364 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQ 423

Query: 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVE 482
           M   + + P+++HY C+VDLLGRAG L EAEE+I SMP+E +A VW AL  ACR HG V 
Sbjct: 424 MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVL 483

Query: 483 FGERLGKILLEMEPQN--------------RRCDDVAKMRKLMKERGIKTNPGSSMIDVN 528
            GER    LL+M+P +                  +  K RKLM++RG++  PG S I+VN
Sbjct: 484 MGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVN 543

Query: 529 GVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSP 565
           G+++EF   D SHPQ ++IY  L ++  +L++   +P
Sbjct: 544 GIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 580


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/655 (33%), Positives = 338/655 (51%), Gaps = 74/655 (11%)

Query: 53  HAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHN 112
           H+   K GH  + +V   L+   A S  S    A  VFN + + +  VW ++        
Sbjct: 185 HSCAWKLGHDHNAFVGSGLID--AYSLCSLVSDAEHVFNGIVRKDAVVWTAM-------- 234

Query: 113 EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS 172
                +S YSE    D   N F      ++CS+         +H   +K     + HV  
Sbjct: 235 -----VSCYSEN---DCPENAFRCA---QSCSLLAISCARQGIHGCAIKTLNDTEPHVGG 283

Query: 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELF----KSTKDK 228
           + + MYA  G +  AR   +     DVI  + +I  Y +    E A ELF    +S+   
Sbjct: 284 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 343

Query: 229 NTGSY-----------------------------------NAMISGFARFGRFEEARKLF 253
           N  S                                    NA++  +A+    + + K+F
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 254 NEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313
           + + D +E++W+ I+ G+++ G  +EAL VF EMQ  ++   +   S VL ACAS  ++ 
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 463

Query: 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLA 373
               IH  +++++   D V+G +L+D YAKCG +  A KVF+ +  +++ +WNA+I G A
Sbjct: 464 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 523

Query: 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433
           +HG+A DA+ELF +M +  +  + ITF  +LS C   G+++ GL     M+  +GI P +
Sbjct: 524 LHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSM 583

Query: 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493
           EHY CIV LLGRAG L +A + I  +P  P+A VW ALL +C  H  V  G    + +LE
Sbjct: 584 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 494 MEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDG 539
           +EPQ+                 D VA +RK M+  G++  PG S +++ G IH F  G  
Sbjct: 644 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 703

Query: 540 SHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINT 599
            HP ++ I  ML+ +  K   EGY P+ + VL D+D+E+K      HSE+LA+A+G + T
Sbjct: 704 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMT 763

Query: 600 DPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCNDFW 654
            PG  IR++KNLR C DCH+A  +ISK+ KR+IIVRD  R+HHF +GKCSC D+W
Sbjct: 764 PPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 197/434 (45%), Gaps = 38/434 (8%)

Query: 86  ALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145
           A ++F+ + + N+  + ++++A  +  +     +L+  +     + N+F   T+ K    
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL 205
            +A      VH+   K G   +  V S  I  Y+    V+ A  + +   + D + W A+
Sbjct: 175 MDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAM 234

Query: 206 IDGY---------LKCGD------IEGAKE-----LFKSTKDKNTGSYNAMISGFARFGR 245
           +  Y          +C        I  A++       K+  D       A++  +A+ G 
Sbjct: 235 VSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGD 294

Query: 246 FEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305
            ++AR  F  +   D I  S +I  Y +    ++A E+F  + R  + P ++ LS VL A
Sbjct: 295 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 354

Query: 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTW 365
           C ++  LD G  IH+H  +     D  +G AL+D YAKC  +D + K+F  ++     +W
Sbjct: 355 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 414

Query: 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA------HAGMIDRGLQA 419
           N ++ G +  G  ++A+ +F +MQ  +M   ++T++ VL ACA      HAG I   ++ 
Sbjct: 415 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 474

Query: 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479
            T+       + +      ++D   + GY+ +A +V   + ME +   W A++     HG
Sbjct: 475 STF-------NNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHG 526

Query: 480 E----VEFGERLGK 489
           +    +E  +R+ K
Sbjct: 527 QAADALELFDRMNK 540



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 150/355 (42%), Gaps = 35/355 (9%)

Query: 22  TNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFS 81
           +++  +E+S  ++L          +   KQ H   +K GH  D +V   L+  +A  + +
Sbjct: 339 SSVLPNEYSLSSVLQACTNMVQLDFG--KQIHNHAIKIGHESDLFVGNALMDFYA--KCN 394

Query: 82  NFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141
           + + +LK+F+S+   N   WN+++    +       +S++ EM        + TY +V +
Sbjct: 395 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 454

Query: 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVIC 201
           AC+ T + +   Q+H  + K+    D  + +S I  YA  G +  A ++     + D+I 
Sbjct: 455 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 514

Query: 202 WNALIDGYLKCGDIEGAKELF----KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257
           WNA+I GY   G    A ELF    KS  + N  ++ A++S     G       LF+ M 
Sbjct: 515 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMR 574

Query: 258 DKDEIT-----WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL 312
               I      ++ I+    + G   +AL+   ++      P   V   +L++C      
Sbjct: 575 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPS---APSAMVWRALLSSCI----- 626

Query: 313 DQGIWIHDHVKRNSICVDAVLG---------TALVDMYAKCGRLDMAWKVFEDMK 358
                IH +V       + +L            L +MYA  G LD    + + M+
Sbjct: 627 -----IHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMR 676



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 101/231 (43%), Gaps = 24/231 (10%)

Query: 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK 293
           N +++ + + G    AR+LF+ M +++ +++  ++  + + G ++ A  +F  ++ +  +
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 294 PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353
             +FVL+ +L    ++ A      +H    +     +A +G+ L+D Y+ C  +  A  V
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 354 FEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA--CAHAG 411
           F  +  K+   W AM+   + +   ++A               R   +C L A  CA  G
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAF--------------RCAQSCSLLAISCARQG 265

Query: 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME 462
           +    ++ L         D E    G ++D+  + G + +A      +P +
Sbjct: 266 IHGCAIKTLN--------DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 308


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,435,951,496
Number of Sequences: 23463169
Number of extensions: 437839221
Number of successful extensions: 1215159
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9566
Number of HSP's successfully gapped in prelim test: 2927
Number of HSP's that attempted gapping in prelim test: 983854
Number of HSP's gapped (non-prelim): 67774
length of query: 654
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 505
effective length of database: 8,863,183,186
effective search space: 4475907508930
effective search space used: 4475907508930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)