BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006246
         (654 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 35.4 bits (80), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFE 247
           +D G+ ++   W  L + Y K GD + A E ++   +    N  ++  + + + + G ++
Sbjct: 3   MDPGNSAEA--WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

Query: 248 EARKLFN---EMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           EA + +    E++  +   W  + + Y K G Y EA+E + +
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 34.3 bits (77), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFE 247
           +D G+ ++   W  L + Y K GD + A E ++   +    N  ++  + + + + G ++
Sbjct: 3   MDPGNSAEA--WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYD 60

Query: 248 EARKLFN---EMNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           EA + +    E+   +   W  + + Y K G Y EA+E + +
Sbjct: 61  EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 34.3 bits (77), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA---MISGFARFGRFEEARKLFN---E 255
           W  L + Y K GD + A E ++   + +  S  A   + + + + G ++EA + +    E
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           ++ +    W  + + Y K G Y EA+E + +
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94



 Score = 34.3 bits (77), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 202 WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNA---MISGFARFGRFEEARKLFN---E 255
           W  L + Y K GD + A E ++   + +  S  A   + + + + G ++EA + +    E
Sbjct: 38  WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97

Query: 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNE 286
           ++ +    W  + + Y K G Y EA+E + +
Sbjct: 98  LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,021,424
Number of Sequences: 62578
Number of extensions: 823346
Number of successful extensions: 1745
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 20
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)