Query 006246
Match_columns 654
No_of_seqs 757 out of 4758
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 20:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9E-124 2E-128 1062.5 69.1 629 17-652 176-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-116 9E-121 976.5 64.3 565 24-654 119-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.1E-74 4.5E-79 657.2 51.5 607 19-649 77-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 3.9E-69 564.4 60.7 492 25-521 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-60 3.4E-65 532.8 49.1 453 62-523 367-850 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-53 5.7E-58 472.8 41.9 452 95-569 84-567 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 1.2E-32 2.7E-37 226.3 7.9 106 521-644 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-27 8.2E-32 274.1 53.9 406 101-515 434-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-27 8.7E-32 273.9 52.8 460 42-512 409-898 (899)
10 PRK11447 cellulose synthase su 99.9 3.8E-19 8.3E-24 208.5 50.7 461 37-512 35-664 (1157)
11 PRK11447 cellulose synthase su 99.9 3.4E-19 7.4E-24 208.9 49.1 465 38-514 120-700 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.7E-19 3.6E-24 179.6 32.1 419 69-499 52-490 (966)
13 PRK09782 bacteriophage N4 rece 99.9 3.4E-17 7.3E-22 183.8 51.6 444 39-499 53-711 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.4E-19 9.5E-24 176.7 30.5 422 42-478 60-503 (966)
15 PRK11788 tetratricopeptide rep 99.9 2.5E-19 5.3E-24 187.3 27.4 287 108-397 45-353 (389)
16 PRK11788 tetratricopeptide rep 99.8 2.4E-18 5.2E-23 179.8 33.1 257 232-492 71-345 (389)
17 TIGR00990 3a0801s09 mitochondr 99.8 3.5E-17 7.6E-22 180.3 43.3 264 243-513 307-596 (615)
18 PRK10049 pgaA outer membrane p 99.8 2.7E-16 6E-21 176.4 44.8 397 70-499 20-461 (765)
19 PRK15174 Vi polysaccharide exp 99.8 9.7E-17 2.1E-21 176.2 37.6 339 135-511 44-400 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-16 5.9E-21 173.3 40.9 403 101-512 130-569 (615)
21 PRK15174 Vi polysaccharide exp 99.8 7.7E-16 1.7E-20 169.2 39.9 339 80-425 18-380 (656)
22 PRK14574 hmsH outer membrane p 99.8 9.7E-15 2.1E-19 160.9 47.4 413 80-499 47-518 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.3E-14 2.9E-19 163.0 48.1 451 37-499 189-745 (987)
24 PRK10049 pgaA outer membrane p 99.8 4.6E-15 1E-19 166.6 43.7 393 38-466 23-461 (765)
25 KOG2002 TPR-containing nuclear 99.8 6.2E-15 1.3E-19 155.2 38.0 461 44-517 250-801 (1018)
26 PRK14574 hmsH outer membrane p 99.7 3.4E-13 7.5E-18 148.7 45.4 439 31-482 38-534 (822)
27 KOG2002 TPR-containing nuclear 99.7 7.6E-13 1.6E-17 139.8 39.6 458 45-516 145-677 (1018)
28 KOG4422 Uncharacterized conser 99.6 3.8E-12 8.3E-17 122.5 35.2 408 30-459 118-587 (625)
29 KOG2003 TPR repeat-containing 99.6 8.6E-13 1.9E-17 127.5 28.5 425 66-499 202-694 (840)
30 KOG0495 HAT repeat protein [RN 99.6 1.3E-10 2.8E-15 117.8 41.1 417 73-499 414-851 (913)
31 KOG4422 Uncharacterized conser 99.6 3.7E-11 8.1E-16 115.8 35.6 311 98-425 116-461 (625)
32 KOG0495 HAT repeat protein [RN 99.6 1.6E-10 3.4E-15 117.2 40.3 453 39-505 415-892 (913)
33 KOG2003 TPR repeat-containing 99.6 3.9E-12 8.4E-17 123.1 27.1 453 29-492 199-720 (840)
34 KOG1155 Anaphase-promoting com 99.5 1.8E-09 3.9E-14 105.7 39.4 297 207-514 235-553 (559)
35 PRK10747 putative protoheme IX 99.5 3.4E-11 7.3E-16 125.0 28.2 220 269-495 161-391 (398)
36 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.6E-15 121.5 32.5 281 210-493 95-398 (409)
37 KOG2076 RNA polymerase III tra 99.5 5.5E-09 1.2E-13 110.4 44.2 447 43-494 152-695 (895)
38 PRK10747 putative protoheme IX 99.5 1.1E-10 2.5E-15 121.0 31.6 275 180-459 96-387 (398)
39 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 107.0 35.3 407 80-494 86-536 (677)
40 KOG1915 Cell cycle control pro 99.4 1.8E-09 4E-14 105.7 35.8 420 44-473 87-548 (677)
41 KOG1126 DNA-binding cell divis 99.4 1.5E-11 3.2E-16 125.6 22.4 277 213-499 333-625 (638)
42 KOG1155 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 107.1 31.9 370 96-493 162-552 (559)
43 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.8E-17 129.4 11.5 249 237-493 15-276 (280)
44 TIGR00540 hemY_coli hemY prote 99.4 1.8E-10 3.9E-15 120.2 27.5 277 180-459 96-396 (409)
45 KOG2076 RNA polymerase III tra 99.4 1.1E-09 2.4E-14 115.6 32.8 357 80-451 152-544 (895)
46 KOG0547 Translocase of outer m 99.4 2.2E-09 4.8E-14 105.7 32.0 374 101-494 118-566 (606)
47 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 3.1E-17 129.2 10.1 254 105-388 15-274 (280)
48 KOG1126 DNA-binding cell divis 99.3 1.6E-10 3.4E-15 118.2 21.7 276 183-464 334-623 (638)
49 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.7E-14 100.5 26.9 290 213-523 49-356 (389)
50 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3E-13 102.2 32.1 450 42-513 28-534 (611)
51 COG3071 HemY Uncharacterized e 99.3 1.1E-08 2.4E-13 98.8 29.7 275 212-493 97-389 (400)
52 KOG0547 Translocase of outer m 99.3 6.4E-09 1.4E-13 102.5 28.4 341 142-499 124-537 (606)
53 COG3071 HemY Uncharacterized e 99.3 1E-08 2.2E-13 99.1 28.4 282 103-390 87-389 (400)
54 KOG4318 Bicoid mRNA stability 99.3 1.8E-08 3.9E-13 106.1 31.7 461 19-518 16-598 (1088)
55 COG2956 Predicted N-acetylgluc 99.2 1.4E-08 3E-13 95.2 27.3 264 111-406 48-324 (389)
56 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.2E-16 85.1 6.5 50 360-409 1-50 (50)
57 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-11 2.4E-16 86.3 5.2 50 96-145 1-50 (50)
58 KOG4318 Bicoid mRNA stability 99.2 1.5E-08 3.2E-13 106.8 29.2 264 52-346 12-286 (1088)
59 KOG1173 Anaphase-promoting com 99.2 1.6E-08 3.5E-13 101.7 27.1 272 164-441 240-530 (611)
60 KOG1174 Anaphase-promoting com 99.2 3.4E-07 7.3E-12 88.7 32.8 278 228-514 230-517 (564)
61 TIGR02521 type_IV_pilW type IV 99.2 1.2E-08 2.6E-13 97.9 23.7 200 261-495 31-233 (234)
62 KOG2047 mRNA splicing factor [ 99.1 9.3E-07 2E-11 90.4 36.6 150 42-194 114-274 (835)
63 TIGR02521 type_IV_pilW type IV 99.1 2.2E-08 4.9E-13 96.0 23.6 194 229-424 30-230 (234)
64 KOG1129 TPR repeat-containing 99.1 4.7E-09 1E-13 98.2 16.8 228 265-497 227-461 (478)
65 KOG2047 mRNA splicing factor [ 99.1 2.9E-06 6.3E-11 86.9 37.2 373 39-425 147-614 (835)
66 PRK12370 invasion protein regu 99.1 2E-08 4.3E-13 109.0 23.9 176 311-493 319-501 (553)
67 KOG1840 Kinesin light chain [C 99.1 2.1E-08 4.6E-13 103.9 22.2 227 267-493 205-478 (508)
68 KOG2376 Signal recognition par 99.1 7.2E-06 1.6E-10 83.4 38.1 417 38-499 20-492 (652)
69 PRK12370 invasion protein regu 99.0 1.9E-08 4.2E-13 109.2 21.5 206 213-425 318-534 (553)
70 KOG3785 Uncharacterized conser 99.0 2.1E-06 4.6E-11 81.6 31.0 459 40-520 32-520 (557)
71 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3.1E-12 93.7 24.9 217 274-498 39-269 (296)
72 KOG1840 Kinesin light chain [C 99.0 1E-07 2.2E-12 98.9 23.9 228 169-424 200-477 (508)
73 KOG4162 Predicted calmodulin-b 99.0 2.6E-06 5.6E-11 89.2 32.1 412 60-499 318-788 (799)
74 KOG3616 Selective LIM binding 99.0 1.3E-06 2.9E-11 90.2 29.3 368 42-459 502-908 (1636)
75 KOG1156 N-terminal acetyltrans 98.9 2.4E-05 5.2E-10 80.6 37.0 440 39-493 16-510 (700)
76 KOG1129 TPR repeat-containing 98.9 4.7E-08 1E-12 91.7 15.9 221 234-459 227-455 (478)
77 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 91.3 19.4 260 241-512 12-286 (290)
78 PF12569 NARP1: NMDA receptor- 98.8 5.7E-06 1.2E-10 87.1 28.7 277 209-494 14-334 (517)
79 COG3063 PilF Tfp pilus assembl 98.8 2.2E-06 4.8E-11 77.2 21.7 191 305-498 44-240 (250)
80 KOG0624 dsRNA-activated protei 98.8 8.7E-06 1.9E-10 77.3 26.5 317 173-512 43-388 (504)
81 PRK11189 lipoprotein NlpI; Pro 98.8 1.8E-06 3.9E-11 85.8 22.5 194 201-401 66-274 (296)
82 PF12569 NARP1: NMDA receptor- 98.8 1.4E-05 3E-10 84.3 29.6 278 177-459 13-331 (517)
83 KOG4162 Predicted calmodulin-b 98.8 5.7E-05 1.2E-09 79.5 33.4 334 162-499 317-754 (799)
84 KOG3617 WD40 and TPR repeat-co 98.7 5.7E-05 1.2E-09 79.6 32.7 207 211-451 924-1189(1416)
85 KOG3785 Uncharacterized conser 98.7 0.00012 2.5E-09 70.1 31.8 388 80-488 35-451 (557)
86 KOG2376 Signal recognition par 98.7 5.3E-05 1.2E-09 77.3 31.4 400 39-460 55-518 (652)
87 COG3063 PilF Tfp pilus assembl 98.7 3.7E-06 8.1E-11 75.7 20.4 192 263-459 37-233 (250)
88 KOG4340 Uncharacterized conser 98.7 1.6E-05 3.5E-10 74.1 23.9 304 101-422 13-335 (459)
89 KOG3617 WD40 and TPR repeat-co 98.7 0.00011 2.4E-09 77.6 32.5 259 63-358 724-994 (1416)
90 cd05804 StaR_like StaR_like; a 98.7 3.2E-05 6.9E-10 79.7 29.6 192 301-494 119-336 (355)
91 KOG1174 Anaphase-promoting com 98.7 1.7E-05 3.8E-10 77.2 24.7 263 195-464 228-503 (564)
92 KOG1156 N-terminal acetyltrans 98.7 0.00025 5.3E-09 73.4 33.9 416 67-495 10-469 (700)
93 PF04733 Coatomer_E: Coatomer 98.6 3.7E-06 8E-11 82.4 20.2 211 174-390 41-264 (290)
94 cd05804 StaR_like StaR_like; a 98.6 8.8E-05 1.9E-09 76.4 31.5 145 144-289 54-214 (355)
95 KOG0548 Molecular co-chaperone 98.6 3.1E-05 6.7E-10 78.3 25.9 223 266-499 229-460 (539)
96 KOG0985 Vesicle coat protein c 98.6 0.00059 1.3E-08 73.8 36.4 118 361-491 1103-1220(1666)
97 KOG1914 mRNA cleavage and poly 98.6 0.00056 1.2E-08 69.3 34.3 128 62-194 17-163 (656)
98 KOG0548 Molecular co-chaperone 98.6 3.7E-05 8E-10 77.7 26.2 201 299-513 227-454 (539)
99 KOG3616 Selective LIM binding 98.6 0.00017 3.6E-09 75.2 30.9 344 69-459 561-934 (1636)
100 KOG1127 TPR repeat-containing 98.6 4E-05 8.7E-10 82.6 26.0 102 396-498 966-1071(1238)
101 PRK04841 transcriptional regul 98.6 0.00015 3.3E-09 84.7 34.2 316 144-459 385-757 (903)
102 PRK04841 transcriptional regul 98.5 0.0028 6E-08 74.2 43.5 29 116-144 293-328 (903)
103 KOG1125 TPR repeat-containing 98.5 4.3E-06 9.3E-11 85.0 15.9 191 306-499 295-498 (579)
104 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.7E-12 58.0 4.1 32 428-459 2-33 (34)
105 PF12854 PPR_1: PPR repeat 98.4 3.5E-07 7.6E-12 57.1 4.3 33 326-358 2-34 (34)
106 KOG1128 Uncharacterized conser 98.4 1.8E-05 3.9E-10 82.7 19.1 234 166-444 396-634 (777)
107 PLN02789 farnesyltranstransfer 98.4 0.00019 4.2E-09 71.4 25.1 209 264-478 40-268 (320)
108 KOG0985 Vesicle coat protein c 98.4 0.0066 1.4E-07 66.2 37.6 250 182-454 1089-1375(1666)
109 TIGR03302 OM_YfiO outer membra 98.4 3.1E-05 6.7E-10 74.5 18.7 59 438-496 171-234 (235)
110 KOG1127 TPR repeat-containing 98.4 0.00017 3.6E-09 78.0 24.6 410 82-499 473-967 (1238)
111 PRK15359 type III secretion sy 98.4 1.9E-05 4.1E-10 69.1 15.0 114 383-502 14-129 (144)
112 KOG1914 mRNA cleavage and poly 98.3 0.0053 1.1E-07 62.6 34.7 394 96-497 18-504 (656)
113 PRK10370 formate-dependent nit 98.3 7.7E-05 1.7E-09 69.0 19.0 151 338-499 23-178 (198)
114 KOG1070 rRNA processing protei 98.3 8.3E-05 1.8E-09 82.9 21.8 196 296-495 1458-1664(1710)
115 KOG1125 TPR repeat-containing 98.3 1.8E-05 3.9E-10 80.6 15.0 118 378-498 410-531 (579)
116 KOG1070 rRNA processing protei 98.2 0.0002 4.4E-09 80.0 22.1 217 197-414 1456-1688(1710)
117 KOG1128 Uncharacterized conser 98.2 6.6E-05 1.4E-09 78.6 17.2 208 234-459 402-613 (777)
118 PRK15179 Vi polysaccharide bio 98.2 0.00032 7E-09 77.0 23.4 126 330-459 85-214 (694)
119 KOG0624 dsRNA-activated protei 98.2 0.0034 7.3E-08 60.3 26.3 298 136-459 41-367 (504)
120 TIGR03302 OM_YfiO outer membra 98.1 0.00033 7.2E-09 67.3 19.9 58 368-425 172-231 (235)
121 COG4783 Putative Zn-dependent 98.1 0.002 4.4E-08 65.0 25.1 107 242-351 318-428 (484)
122 PRK15359 type III secretion sy 98.1 0.00012 2.7E-09 63.9 14.9 119 353-474 15-135 (144)
123 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 52.8 4.3 35 99-133 1-35 (35)
124 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.5E-09 63.5 14.3 113 384-500 5-120 (135)
125 PRK10370 formate-dependent nit 98.1 0.00063 1.4E-08 63.0 19.8 122 309-434 52-179 (198)
126 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 52.7 4.1 35 363-397 1-35 (35)
127 KOG4340 Uncharacterized conser 98.1 0.0017 3.8E-08 60.9 22.0 280 68-359 13-338 (459)
128 PLN02789 farnesyltranstransfer 98.1 0.001 2.2E-08 66.3 22.2 126 216-343 125-267 (320)
129 KOG3081 Vesicle coat complex C 98.1 0.0042 9E-08 57.7 23.7 176 317-499 94-276 (299)
130 PRK14720 transcript cleavage f 98.1 0.0023 5E-08 71.2 26.5 169 195-391 27-198 (906)
131 COG4783 Putative Zn-dependent 98.0 0.0015 3.2E-08 66.0 21.5 106 344-453 319-428 (484)
132 KOG3060 Uncharacterized conser 98.0 0.0011 2.4E-08 61.0 18.8 161 334-499 55-225 (289)
133 COG5010 TadD Flp pilus assembl 98.0 0.00047 1E-08 63.9 16.6 153 335-490 70-227 (257)
134 COG5010 TadD Flp pilus assembl 98.0 0.0021 4.6E-08 59.6 20.4 156 300-459 70-228 (257)
135 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 50.5 4.1 34 98-131 1-34 (34)
136 PRK14720 transcript cleavage f 97.9 0.0018 3.9E-08 72.0 22.9 143 229-391 30-178 (906)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00034 7.3E-09 71.1 15.5 127 333-463 171-298 (395)
138 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 49.4 4.3 33 262-294 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00034 7.4E-09 71.1 14.5 122 235-358 174-295 (395)
140 KOG3081 Vesicle coat complex C 97.8 0.0059 1.3E-07 56.8 20.1 107 340-449 146-257 (299)
141 PF09976 TPR_21: Tetratricopep 97.8 0.00098 2.1E-08 58.5 14.8 125 365-492 15-145 (145)
142 KOG2053 Mitochondrial inherita 97.8 0.097 2.1E-06 57.0 36.5 212 42-259 21-255 (932)
143 PRK15179 Vi polysaccharide bio 97.8 0.0026 5.7E-08 70.0 20.5 129 260-391 85-217 (694)
144 PF04840 Vps16_C: Vps16, C-ter 97.7 0.062 1.3E-06 53.5 28.4 124 336-479 182-305 (319)
145 KOG0553 TPR repeat-containing 97.7 0.00029 6.4E-09 66.5 10.1 100 407-509 91-193 (304)
146 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 46.3 3.4 31 99-129 1-31 (31)
147 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00077 1.7E-08 56.7 11.8 101 399-499 4-110 (119)
148 PF01535 PPR: PPR repeat; Int 97.7 4.9E-05 1.1E-09 46.5 3.1 31 363-393 1-31 (31)
149 PF09976 TPR_21: Tetratricopep 97.6 0.0032 7E-08 55.2 15.5 122 264-388 15-144 (145)
150 TIGR02552 LcrH_SycD type III s 97.6 0.0013 2.9E-08 56.8 12.8 91 334-425 20-113 (135)
151 cd00189 TPR Tetratricopeptide 97.5 0.0011 2.3E-08 52.6 10.4 89 406-496 9-99 (100)
152 PF13432 TPR_16: Tetratricopep 97.5 0.00036 7.8E-09 51.4 6.2 61 439-499 3-65 (65)
153 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.7E-08 62.0 14.3 134 363-499 2-141 (280)
154 KOG2041 WD40 repeat protein [G 97.4 0.14 3E-06 54.1 25.9 353 84-474 680-1066(1189)
155 PRK10153 DNA-binding transcrip 97.4 0.0066 1.4E-07 64.8 16.7 140 359-500 334-488 (517)
156 KOG3060 Uncharacterized conser 97.3 0.11 2.3E-06 48.4 21.2 179 276-459 27-217 (289)
157 cd00189 TPR Tetratricopeptide 97.3 0.0036 7.7E-08 49.5 10.7 92 365-459 3-94 (100)
158 PRK02603 photosystem I assembl 97.3 0.0072 1.6E-07 54.7 13.5 127 361-510 34-163 (172)
159 PF14938 SNAP: Soluble NSF att 97.3 0.05 1.1E-06 53.7 20.5 100 263-362 157-268 (282)
160 PF14938 SNAP: Soluble NSF att 97.2 0.028 6.1E-07 55.5 18.2 101 405-505 122-236 (282)
161 PF12895 Apc3: Anaphase-promot 97.2 0.00084 1.8E-08 52.5 5.9 79 375-457 2-82 (84)
162 PLN03088 SGT1, suppressor of 97.2 0.0036 7.9E-08 63.9 12.1 90 408-499 13-104 (356)
163 PF13414 TPR_11: TPR repeat; P 97.2 0.00073 1.6E-08 50.5 5.3 64 433-496 3-69 (69)
164 KOG2280 Vacuolar assembly/sort 97.2 0.46 9.9E-06 51.0 29.1 149 108-257 399-573 (829)
165 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.34 7.5E-06 48.7 31.5 413 62-498 39-535 (660)
166 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.014 3.1E-07 48.8 13.1 93 365-459 5-102 (119)
167 PF07079 DUF1347: Protein of u 97.1 0.38 8.3E-06 48.6 32.0 138 41-181 17-180 (549)
168 PF04840 Vps16_C: Vps16, C-ter 97.1 0.36 7.8E-06 48.1 25.6 106 232-353 179-284 (319)
169 KOG2796 Uncharacterized conser 97.0 0.22 4.7E-06 46.5 20.2 168 232-401 138-323 (366)
170 KOG0553 TPR repeat-containing 97.0 0.007 1.5E-07 57.4 10.9 96 370-469 89-186 (304)
171 PRK15363 pathogenicity island 97.0 0.022 4.7E-07 49.4 13.0 92 336-428 40-134 (157)
172 KOG1538 Uncharacterized conser 97.0 0.049 1.1E-06 56.8 17.2 220 136-391 601-846 (1081)
173 PRK15363 pathogenicity island 97.0 0.014 3E-07 50.6 11.5 96 260-357 34-129 (157)
174 PRK02603 photosystem I assembl 97.0 0.024 5.2E-07 51.3 14.0 130 260-411 34-165 (172)
175 PF06239 ECSIT: Evolutionarily 97.0 0.0069 1.5E-07 55.0 9.8 96 352-448 35-153 (228)
176 PF13281 DUF4071: Domain of un 97.0 0.15 3.2E-06 51.3 20.2 161 336-499 146-339 (374)
177 PF05843 Suf: Suppressor of fo 96.9 0.027 5.9E-07 55.3 14.9 126 263-390 3-135 (280)
178 PF08579 RPM2: Mitochondrial r 96.9 0.0097 2.1E-07 47.8 9.1 86 301-409 30-116 (120)
179 PF10037 MRP-S27: Mitochondria 96.9 0.014 3E-07 59.9 12.7 99 260-358 65-165 (429)
180 PLN03088 SGT1, suppressor of 96.9 0.016 3.4E-07 59.2 13.3 92 370-464 10-102 (356)
181 PF12895 Apc3: Anaphase-promot 96.9 0.005 1.1E-07 48.0 7.5 50 337-386 31-82 (84)
182 PF08579 RPM2: Mitochondrial r 96.9 0.019 4.1E-07 46.2 10.4 81 263-343 27-116 (120)
183 KOG2041 WD40 repeat protein [G 96.8 0.42 9.1E-06 50.7 22.6 189 80-289 747-951 (1189)
184 CHL00033 ycf3 photosystem I as 96.8 0.021 4.6E-07 51.4 12.1 64 362-425 35-100 (168)
185 PF10037 MRP-S27: Mitochondria 96.8 0.014 3E-07 59.9 11.6 119 60-180 61-185 (429)
186 PF12688 TPR_5: Tetratrico pep 96.8 0.033 7.1E-07 46.5 11.8 91 368-458 7-100 (120)
187 PF12688 TPR_5: Tetratrico pep 96.7 0.047 1E-06 45.5 12.6 104 266-369 6-113 (120)
188 CHL00033 ycf3 photosystem I as 96.7 0.035 7.5E-07 50.0 12.9 65 261-325 35-101 (168)
189 PRK10803 tol-pal system protei 96.7 0.027 5.8E-07 54.4 12.5 101 399-499 145-251 (263)
190 COG4700 Uncharacterized protei 96.7 0.19 4.1E-06 44.4 16.0 114 336-454 94-214 (251)
191 KOG1538 Uncharacterized conser 96.6 0.24 5.2E-06 52.0 18.9 125 337-493 709-845 (1081)
192 PRK10866 outer membrane biogen 96.6 0.59 1.3E-05 44.8 20.9 61 263-325 34-98 (243)
193 PF14559 TPR_19: Tetratricopep 96.5 0.0025 5.4E-08 47.4 3.3 58 409-468 3-61 (68)
194 PRK10866 outer membrane biogen 96.5 0.18 3.9E-06 48.3 16.7 54 238-291 40-99 (243)
195 PF06239 ECSIT: Evolutionarily 96.5 0.024 5.2E-07 51.5 9.7 97 250-346 34-153 (228)
196 PF13371 TPR_9: Tetratricopept 96.5 0.0083 1.8E-07 45.2 6.0 60 440-499 2-63 (73)
197 PRK10153 DNA-binding transcrip 96.5 0.15 3.2E-06 54.6 17.3 59 398-459 421-479 (517)
198 PF14559 TPR_19: Tetratricopep 96.3 0.013 2.9E-07 43.3 6.3 54 445-498 3-58 (68)
199 KOG1920 IkappaB kinase complex 96.3 1.9 4.2E-05 49.0 24.6 159 243-460 893-1053(1265)
200 PF13424 TPR_12: Tetratricopep 96.2 0.0075 1.6E-07 46.2 4.5 60 435-494 7-75 (78)
201 KOG2114 Vacuolar assembly/sort 96.1 2.8 6E-05 46.0 29.3 177 69-259 338-519 (933)
202 PF13432 TPR_16: Tetratricopep 96.1 0.02 4.3E-07 41.9 6.2 55 370-425 5-59 (65)
203 KOG0550 Molecular chaperone (D 96.0 1.3 2.9E-05 44.3 19.7 54 371-424 258-314 (486)
204 PF13414 TPR_11: TPR repeat; P 96.0 0.036 7.8E-07 41.1 7.2 64 361-425 2-66 (69)
205 COG4700 Uncharacterized protei 96.0 1.1 2.3E-05 39.9 17.6 131 360-490 87-218 (251)
206 KOG0550 Molecular chaperone (D 95.9 2.2 4.8E-05 42.8 21.0 151 239-391 178-350 (486)
207 PF10300 DUF3808: Protein of u 95.9 2.1 4.7E-05 45.4 22.5 168 152-324 176-375 (468)
208 PF00515 TPR_1: Tetratricopept 95.8 0.018 3.8E-07 35.7 4.2 34 465-498 1-34 (34)
209 COG0457 NrfG FOG: TPR repeat [ 95.8 1.6 3.5E-05 40.7 23.9 199 297-497 60-268 (291)
210 PF13525 YfiO: Outer membrane 95.8 1.4 3E-05 41.0 18.5 59 267-325 11-71 (203)
211 PF07719 TPR_2: Tetratricopept 95.7 0.029 6.2E-07 34.7 4.8 33 466-498 2-34 (34)
212 KOG2796 Uncharacterized conser 95.7 0.48 1E-05 44.3 14.3 135 364-499 179-320 (366)
213 PRK10803 tol-pal system protei 95.7 0.14 3.1E-06 49.4 11.7 84 374-459 155-243 (263)
214 COG4235 Cytochrome c biogenesi 95.7 0.45 9.8E-06 45.7 14.6 109 396-506 155-268 (287)
215 KOG1130 Predicted G-alpha GTPa 95.7 0.042 9.1E-07 54.3 7.7 49 108-157 27-79 (639)
216 KOG1130 Predicted G-alpha GTPa 95.6 0.037 8.1E-07 54.6 7.3 93 298-390 237-343 (639)
217 PF13428 TPR_14: Tetratricopep 95.6 0.02 4.3E-07 38.1 3.8 34 466-499 2-35 (44)
218 KOG1258 mRNA processing protei 95.6 3.9 8.5E-05 43.2 26.5 167 330-499 296-475 (577)
219 PF12921 ATP13: Mitochondrial 95.5 0.19 4.2E-06 42.3 10.2 49 393-441 48-96 (126)
220 PF12921 ATP13: Mitochondrial 95.3 0.18 3.9E-06 42.5 9.5 82 398-479 3-102 (126)
221 PF13525 YfiO: Outer membrane 95.2 0.88 1.9E-05 42.3 14.9 53 238-290 13-71 (203)
222 COG4235 Cytochrome c biogenesi 95.1 0.3 6.6E-06 46.9 11.4 95 329-425 154-255 (287)
223 PF13424 TPR_12: Tetratricopep 95.1 0.059 1.3E-06 41.1 5.6 26 399-424 48-73 (78)
224 smart00299 CLH Clathrin heavy 95.0 1.2 2.6E-05 38.5 14.5 67 397-476 69-136 (140)
225 KOG2053 Mitochondrial inherita 95.0 7.2 0.00016 43.3 39.5 200 31-238 44-265 (932)
226 PF04053 Coatomer_WDAD: Coatom 95.0 1.9 4.1E-05 45.3 18.1 154 179-357 272-428 (443)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.13 2.9E-06 52.4 9.0 58 399-459 77-138 (453)
228 PF13512 TPR_18: Tetratricopep 94.9 0.21 4.6E-06 42.5 8.9 114 442-566 19-137 (142)
229 PF07079 DUF1347: Protein of u 94.8 5.5 0.00012 40.7 32.8 405 80-498 19-525 (549)
230 KOG3941 Intermediate in Toll s 94.7 0.24 5.2E-06 46.7 9.2 100 350-450 53-175 (406)
231 PRK09687 putative lyase; Provi 94.7 4.8 0.0001 39.5 25.5 80 63-146 35-118 (280)
232 PF03704 BTAD: Bacterial trans 94.6 0.33 7.1E-06 42.4 9.9 68 366-434 66-137 (146)
233 smart00299 CLH Clathrin heavy 94.3 3.1 6.8E-05 35.8 16.0 27 244-272 110-136 (140)
234 KOG1258 mRNA processing protei 94.1 9.3 0.0002 40.6 27.8 360 44-409 59-487 (577)
235 PF13512 TPR_18: Tetratricopep 94.1 2.2 4.8E-05 36.5 13.1 115 369-499 17-133 (142)
236 PRK09687 putative lyase; Provi 94.1 6.4 0.00014 38.6 27.3 61 227-287 34-98 (280)
237 PF13371 TPR_9: Tetratricopept 94.1 0.36 7.8E-06 36.1 7.8 54 371-425 4-57 (73)
238 PF04053 Coatomer_WDAD: Coatom 94.1 2.1 4.6E-05 44.9 15.9 132 299-460 298-429 (443)
239 COG3898 Uncharacterized membra 93.9 7.6 0.00016 38.9 27.3 270 80-359 97-391 (531)
240 PF13281 DUF4071: Domain of un 93.9 3.3 7.2E-05 41.9 16.2 72 235-306 146-227 (374)
241 COG3898 Uncharacterized membra 93.8 7.9 0.00017 38.8 25.5 241 212-459 133-389 (531)
242 KOG0543 FKBP-type peptidyl-pro 93.8 0.66 1.4E-05 46.5 10.8 110 368-499 214-325 (397)
243 PF13181 TPR_8: Tetratricopept 93.7 0.12 2.6E-06 31.8 3.8 33 466-498 2-34 (34)
244 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 1.1 2.4E-05 46.0 12.3 62 197-258 73-140 (453)
245 PRK15331 chaperone protein Sic 93.5 0.67 1.5E-05 40.6 9.2 91 267-359 43-133 (165)
246 COG1729 Uncharacterized protei 93.4 1.7 3.6E-05 41.4 12.4 100 399-499 144-249 (262)
247 PF03704 BTAD: Bacterial trans 93.4 0.41 8.8E-06 41.8 8.0 57 265-322 66-122 (146)
248 KOG2280 Vacuolar assembly/sort 93.3 15 0.00032 40.2 33.0 301 173-490 442-795 (829)
249 KOG1464 COP9 signalosome, subu 93.3 5.7 0.00012 37.5 15.2 226 263-498 67-332 (440)
250 PF14853 Fis1_TPR_C: Fis1 C-te 93.0 0.34 7.3E-06 33.5 5.4 40 470-512 6-45 (53)
251 PRK15331 chaperone protein Sic 93.0 3.3 7.2E-05 36.3 12.7 17 374-390 49-65 (165)
252 KOG3941 Intermediate in Toll s 92.9 0.66 1.4E-05 43.9 8.7 109 250-358 54-186 (406)
253 PF10345 Cohesin_load: Cohesin 92.9 18 0.00039 40.1 26.4 115 42-159 72-205 (608)
254 PF04184 ST7: ST7 protein; In 92.8 12 0.00026 39.0 18.0 98 402-499 264-380 (539)
255 KOG0543 FKBP-type peptidyl-pro 92.8 1.2 2.7E-05 44.6 11.0 78 262-341 258-335 (397)
256 COG3118 Thioredoxin domain-con 92.8 4.9 0.00011 38.8 14.4 51 208-258 143-196 (304)
257 KOG1941 Acetylcholine receptor 92.6 3.4 7.4E-05 40.7 13.2 129 366-494 126-275 (518)
258 COG5107 RNA14 Pre-mRNA 3'-end 92.6 14 0.0003 37.9 25.4 143 331-478 397-548 (660)
259 PRK11906 transcriptional regul 92.5 6.8 0.00015 40.5 16.0 109 378-491 320-433 (458)
260 COG4105 ComL DNA uptake lipopr 92.4 10 0.00022 36.0 16.8 56 369-425 174-232 (254)
261 PRK11906 transcriptional regul 92.4 3 6.5E-05 43.0 13.3 119 378-498 274-405 (458)
262 PF00637 Clathrin: Region in C 92.4 0.061 1.3E-06 46.9 1.3 85 138-225 12-96 (143)
263 PF08631 SPO22: Meiosis protei 92.2 12 0.00027 36.6 22.5 20 473-492 254-273 (278)
264 PF13176 TPR_7: Tetratricopept 92.1 0.26 5.7E-06 30.9 3.6 28 467-494 1-28 (36)
265 PF09205 DUF1955: Domain of un 92.1 3.5 7.5E-05 34.5 10.8 64 263-327 88-151 (161)
266 COG1729 Uncharacterized protei 91.9 1.7 3.6E-05 41.4 10.2 86 374-459 153-241 (262)
267 COG0457 NrfG FOG: TPR repeat [ 91.9 10 0.00022 35.0 23.4 184 310-497 37-234 (291)
268 PF08631 SPO22: Meiosis protei 91.9 14 0.00029 36.4 21.4 58 233-290 87-150 (278)
269 PF09205 DUF1955: Domain of un 91.9 6.8 0.00015 32.9 12.6 63 365-429 89-151 (161)
270 COG4105 ComL DNA uptake lipopr 91.8 12 0.00026 35.5 17.5 157 343-499 46-238 (254)
271 PF07035 Mic1: Colon cancer-as 91.7 9.1 0.0002 33.9 14.1 36 158-193 19-54 (167)
272 KOG1941 Acetylcholine receptor 91.7 6.6 0.00014 38.8 14.0 214 211-424 18-273 (518)
273 PF10300 DUF3808: Protein of u 91.0 14 0.00031 39.3 17.5 79 311-391 248-334 (468)
274 KOG2066 Vacuolar assembly/sort 90.9 29 0.00062 38.3 28.3 74 400-485 637-710 (846)
275 KOG1585 Protein required for f 90.8 4.3 9.3E-05 37.9 11.2 160 105-286 38-215 (308)
276 PF04097 Nic96: Nup93/Nic96; 90.7 31 0.00066 38.3 20.5 69 99-169 113-188 (613)
277 PF07035 Mic1: Colon cancer-as 90.3 8.5 0.00018 34.1 12.4 35 119-153 15-49 (167)
278 PF13170 DUF4003: Protein of u 90.2 8.5 0.00018 38.0 13.9 64 378-442 159-226 (297)
279 KOG1920 IkappaB kinase complex 90.1 24 0.00051 40.8 18.3 117 333-460 910-1026(1265)
280 KOG2610 Uncharacterized conser 90.1 5.3 0.00011 39.1 11.7 111 110-222 115-232 (491)
281 KOG4555 TPR repeat-containing 90.0 2.8 6.1E-05 34.9 8.4 88 407-496 53-146 (175)
282 PF10602 RPN7: 26S proteasome 89.9 7 0.00015 35.3 12.1 94 364-459 38-139 (177)
283 KOG4555 TPR repeat-containing 89.5 2.3 4.9E-05 35.4 7.6 58 441-498 51-110 (175)
284 PF13176 TPR_7: Tetratricopept 88.9 0.87 1.9E-05 28.5 4.0 26 364-389 1-26 (36)
285 KOG1585 Protein required for f 88.6 22 0.00047 33.5 16.4 138 263-419 93-249 (308)
286 COG4785 NlpI Lipoprotein NlpI, 88.5 15 0.00033 33.8 12.6 81 80-163 78-163 (297)
287 COG3629 DnrI DNA-binding trans 88.4 3.4 7.3E-05 40.0 9.3 76 331-406 153-236 (280)
288 COG4649 Uncharacterized protei 88.1 7.2 0.00016 34.4 10.0 19 271-289 104-122 (221)
289 COG2976 Uncharacterized protei 88.1 20 0.00043 32.5 14.1 115 380-498 70-192 (207)
290 KOG4648 Uncharacterized conser 88.0 1.5 3.3E-05 42.7 6.6 95 369-499 104-199 (536)
291 PF13428 TPR_14: Tetratricopep 87.9 1.2 2.7E-05 29.3 4.4 37 435-471 3-41 (44)
292 KOG0276 Vesicle coat complex C 87.7 7.9 0.00017 41.0 11.8 151 179-357 597-747 (794)
293 TIGR02508 type_III_yscG type I 87.5 7.9 0.00017 30.6 8.9 61 237-300 46-106 (115)
294 PF13170 DUF4003: Protein of u 87.0 24 0.00051 34.9 14.5 126 277-404 78-224 (297)
295 PF09613 HrpB1_HrpK: Bacterial 86.9 21 0.00045 31.4 13.5 104 404-514 17-122 (160)
296 KOG2396 HAT (Half-A-TPR) repea 86.8 44 0.00094 35.0 30.5 102 393-497 455-563 (568)
297 COG3118 Thioredoxin domain-con 86.6 33 0.00071 33.4 17.9 116 306-425 144-264 (304)
298 KOG2066 Vacuolar assembly/sort 86.6 57 0.0012 36.1 24.5 169 174-362 362-536 (846)
299 smart00028 TPR Tetratricopepti 86.3 1.4 2.9E-05 25.8 3.8 32 466-497 2-33 (34)
300 PF13174 TPR_6: Tetratricopept 86.1 1.5 3.3E-05 26.3 3.9 30 469-498 4-33 (33)
301 PF00637 Clathrin: Region in C 85.8 0.26 5.6E-06 42.9 0.2 46 106-151 15-60 (143)
302 PF13374 TPR_10: Tetratricopep 85.6 1.9 4.1E-05 27.7 4.4 28 466-493 3-30 (42)
303 COG4649 Uncharacterized protei 85.5 26 0.00056 31.1 13.5 119 372-493 68-195 (221)
304 KOG2610 Uncharacterized conser 84.6 16 0.00034 36.0 11.3 153 343-499 115-283 (491)
305 PF00515 TPR_1: Tetratricopept 84.2 2.3 4.9E-05 25.9 4.0 28 364-391 3-30 (34)
306 COG3629 DnrI DNA-binding trans 84.2 8.8 0.00019 37.2 9.7 76 363-439 154-233 (280)
307 PF09613 HrpB1_HrpK: Bacterial 84.0 28 0.0006 30.6 11.7 107 241-352 21-130 (160)
308 TIGR02508 type_III_yscG type I 83.7 20 0.00044 28.4 9.5 86 312-401 21-106 (115)
309 KOG2062 26S proteasome regulat 83.2 79 0.0017 34.9 24.3 123 371-498 510-638 (929)
310 KOG0403 Neoplastic transformat 82.4 64 0.0014 33.2 15.2 71 335-409 513-586 (645)
311 PF02259 FAT: FAT domain; Int 82.3 60 0.0013 32.9 20.5 136 361-499 145-292 (352)
312 KOG2114 Vacuolar assembly/sort 82.0 93 0.002 34.9 20.3 177 232-423 336-516 (933)
313 KOG0890 Protein kinase of the 81.9 1.6E+02 0.0034 37.4 22.6 157 204-368 1388-1552(2382)
314 KOG4570 Uncharacterized conser 81.8 14 0.0003 36.0 9.8 97 326-426 59-164 (418)
315 PF02284 COX5A: Cytochrome c o 81.6 11 0.00025 29.9 7.6 63 378-442 26-88 (108)
316 PRK13800 putative oxidoreducta 81.4 1.2E+02 0.0025 35.7 27.4 256 219-493 624-880 (897)
317 PF04097 Nic96: Nup93/Nic96; 80.8 98 0.0021 34.4 18.5 66 66-134 113-188 (613)
318 PF13431 TPR_17: Tetratricopep 80.5 2.9 6.4E-05 25.7 3.4 24 328-351 10-33 (34)
319 PF06552 TOM20_plant: Plant sp 80.1 6 0.00013 35.3 6.3 37 481-517 96-139 (186)
320 PF10602 RPN7: 26S proteasome 80.1 17 0.00036 32.9 9.6 94 332-425 37-141 (177)
321 PF04184 ST7: ST7 protein; In 79.9 84 0.0018 33.1 15.4 55 335-389 263-322 (539)
322 KOG4570 Uncharacterized conser 79.6 13 0.00028 36.2 8.8 102 59-163 58-165 (418)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 79.0 15 0.00033 28.9 7.4 63 377-441 22-84 (103)
324 PF13431 TPR_17: Tetratricopep 78.8 3.2 7E-05 25.5 3.2 23 166-188 11-33 (34)
325 PF13374 TPR_10: Tetratricopep 77.7 5.2 0.00011 25.5 4.3 27 364-390 4-30 (42)
326 KOG3364 Membrane protein invol 76.7 17 0.00036 30.8 7.5 41 468-511 74-114 (149)
327 PF11207 DUF2989: Protein of u 76.7 19 0.0004 32.9 8.6 73 278-351 123-198 (203)
328 KOG1586 Protein required for f 76.2 69 0.0015 30.1 15.9 93 411-503 128-233 (288)
329 PF07719 TPR_2: Tetratricopept 76.1 7.1 0.00015 23.5 4.3 27 364-390 3-29 (34)
330 PF11207 DUF2989: Protein of u 75.4 16 0.00035 33.3 7.9 69 150-219 123-198 (203)
331 KOG1586 Protein required for f 73.8 80 0.0017 29.7 14.1 62 438-499 118-188 (288)
332 PRK15180 Vi polysaccharide bio 73.3 27 0.00058 36.1 9.5 121 374-498 301-424 (831)
333 PF07721 TPR_4: Tetratricopept 73.2 6.4 0.00014 22.4 3.2 21 437-457 5-25 (26)
334 PF06957 COPI_C: Coatomer (COP 72.6 6.8 0.00015 40.3 5.4 56 455-510 288-345 (422)
335 COG2976 Uncharacterized protei 72.0 79 0.0017 28.8 14.5 88 305-392 98-189 (207)
336 PRK11619 lytic murein transgly 71.6 1.7E+02 0.0038 32.6 32.2 52 440-491 319-372 (644)
337 KOG4279 Serine/threonine prote 71.0 1.7E+02 0.0038 32.4 15.2 198 263-509 203-410 (1226)
338 COG1747 Uncharacterized N-term 70.9 1.5E+02 0.0032 31.4 18.4 177 293-475 63-249 (711)
339 PF07721 TPR_4: Tetratricopept 69.5 9.5 0.00021 21.6 3.4 20 336-355 6-25 (26)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 69.3 31 0.00067 27.3 7.0 61 277-339 23-84 (103)
341 KOG1464 COP9 signalosome, subu 69.2 1.1E+02 0.0024 29.3 15.9 66 95-160 23-92 (440)
342 PRK10941 hypothetical protein; 68.5 39 0.00085 32.8 9.4 77 437-513 185-263 (269)
343 COG1747 Uncharacterized N-term 67.8 1.7E+02 0.0037 31.0 21.2 174 260-442 65-248 (711)
344 PF07163 Pex26: Pex26 protein; 67.5 70 0.0015 30.9 10.3 88 369-459 90-184 (309)
345 KOG4234 TPR repeat-containing 67.2 34 0.00074 31.1 7.8 21 270-290 104-124 (271)
346 PF13181 TPR_8: Tetratricopept 67.1 13 0.00029 22.3 4.1 27 364-390 3-29 (34)
347 KOG0276 Vesicle coat complex C 66.9 96 0.0021 33.4 12.0 102 341-460 647-748 (794)
348 KOG4234 TPR repeat-containing 66.7 49 0.0011 30.2 8.6 26 473-498 176-201 (271)
349 PF09477 Type_III_YscG: Bacter 66.2 69 0.0015 25.9 10.6 78 148-228 21-98 (116)
350 TIGR03504 FimV_Cterm FimV C-te 65.7 8.9 0.00019 25.3 3.0 23 471-493 5-27 (44)
351 PF09477 Type_III_YscG: Bacter 65.2 73 0.0016 25.8 10.0 86 311-400 21-106 (116)
352 KOG1550 Extracellular protein 65.0 2.2E+02 0.0047 31.2 19.9 172 246-425 228-425 (552)
353 KOG2396 HAT (Half-A-TPR) repea 64.2 2E+02 0.0043 30.4 25.7 106 348-456 445-553 (568)
354 PF07720 TPR_3: Tetratricopept 63.6 27 0.00058 21.9 4.8 32 467-498 3-36 (36)
355 COG3947 Response regulator con 63.5 1.5E+02 0.0033 28.9 14.0 56 437-492 283-340 (361)
356 PF09670 Cas_Cas02710: CRISPR- 62.7 1.1E+02 0.0025 31.5 12.1 120 372-493 141-269 (379)
357 TIGR02561 HrpB1_HrpK type III 62.3 1.1E+02 0.0023 26.7 11.0 20 341-360 54-73 (153)
358 KOG0890 Protein kinase of the 61.8 4.5E+02 0.0098 33.8 23.5 144 173-320 1388-1542(2382)
359 PF10345 Cohesin_load: Cohesin 61.3 2.7E+02 0.0058 31.0 30.2 177 48-226 39-252 (608)
360 KOG4648 Uncharacterized conser 61.2 27 0.00059 34.4 6.6 108 338-459 104-221 (536)
361 PF02284 COX5A: Cytochrome c o 61.1 45 0.00098 26.7 6.6 60 279-339 28-87 (108)
362 KOG4507 Uncharacterized conser 59.9 32 0.00069 36.6 7.2 102 409-513 619-724 (886)
363 PF02259 FAT: FAT domain; Int 59.6 2E+02 0.0043 29.0 15.8 61 433-493 146-212 (352)
364 PF10366 Vps39_1: Vacuolar sor 57.1 1.1E+02 0.0023 25.0 8.7 27 263-289 41-67 (108)
365 PRK13342 recombination factor 56.7 2.6E+02 0.0055 29.3 14.3 47 365-411 230-279 (413)
366 cd08819 CARD_MDA5_2 Caspase ac 56.4 55 0.0012 25.3 6.2 33 244-277 50-82 (88)
367 COG4455 ImpE Protein of avirul 56.2 76 0.0017 29.5 8.1 125 364-499 3-139 (273)
368 TIGR02561 HrpB1_HrpK type III 56.2 1.4E+02 0.003 26.0 14.0 97 409-512 22-120 (153)
369 COG4976 Predicted methyltransf 55.7 17 0.00037 33.8 4.0 58 442-499 4-63 (287)
370 KOG0292 Vesicle coat complex C 55.7 37 0.00079 38.0 7.1 121 375-519 606-729 (1202)
371 PF04910 Tcf25: Transcriptiona 54.4 2.6E+02 0.0056 28.7 13.7 90 405-497 111-225 (360)
372 PF11846 DUF3366: Domain of un 54.0 42 0.00091 30.7 6.6 35 462-496 141-175 (193)
373 COG3947 Response regulator con 53.8 2.2E+02 0.0049 27.8 13.2 69 366-435 283-355 (361)
374 COG4785 NlpI Lipoprotein NlpI, 53.7 1.9E+02 0.0041 27.0 14.5 61 230-290 99-162 (297)
375 TIGR03504 FimV_Cterm FimV C-te 53.4 29 0.00062 22.9 3.8 22 369-390 6-27 (44)
376 PF11846 DUF3366: Domain of un 52.7 39 0.00085 30.9 6.2 56 404-459 115-170 (193)
377 PF06552 TOM20_plant: Plant sp 52.5 1.1E+02 0.0023 27.6 8.3 29 380-410 53-82 (186)
378 PF13762 MNE1: Mitochondrial s 52.3 56 0.0012 28.2 6.5 88 57-146 29-128 (145)
379 PF07163 Pex26: Pex26 protein; 52.0 1.3E+02 0.0029 29.1 9.4 86 267-354 89-181 (309)
380 TIGR02270 conserved hypothetic 50.0 3.2E+02 0.007 28.5 24.6 26 435-460 254-279 (410)
381 PF11663 Toxin_YhaV: Toxin wit 49.6 22 0.00047 30.0 3.4 31 111-143 108-138 (140)
382 TIGR02270 conserved hypothetic 49.4 3.3E+02 0.0072 28.4 25.7 172 105-286 45-216 (410)
383 PRK11619 lytic murein transgly 49.1 4.3E+02 0.0092 29.6 35.5 205 274-491 254-465 (644)
384 COG5159 RPN6 26S proteasome re 49.0 2.6E+02 0.0057 27.2 12.3 156 268-423 10-191 (421)
385 PF10579 Rapsyn_N: Rapsyn N-te 49.0 33 0.00073 25.9 4.0 19 436-454 46-64 (80)
386 PF14669 Asp_Glu_race_2: Putat 47.9 2.2E+02 0.0047 26.0 11.8 58 401-459 136-207 (233)
387 PRK13800 putative oxidoreducta 47.8 5.3E+02 0.011 30.3 28.2 260 188-467 624-886 (897)
388 cd08819 CARD_MDA5_2 Caspase ac 47.2 1.2E+02 0.0026 23.6 6.7 39 343-382 48-86 (88)
389 KOG4077 Cytochrome c oxidase, 47.1 1.2E+02 0.0026 25.4 7.2 70 380-460 67-136 (149)
390 PF10366 Vps39_1: Vacuolar sor 46.8 1.6E+02 0.0034 24.0 8.2 27 364-390 41-67 (108)
391 PHA02537 M terminase endonucle 46.3 2.6E+02 0.0057 26.4 11.1 106 372-499 93-212 (230)
392 PF10579 Rapsyn_N: Rapsyn N-te 46.3 58 0.0013 24.7 4.9 46 374-419 18-65 (80)
393 PF04190 DUF410: Protein of un 45.9 2.9E+02 0.0062 26.7 17.3 83 329-426 88-170 (260)
394 PF12862 Apc5: Anaphase-promot 44.7 89 0.0019 24.6 6.3 25 470-494 46-70 (94)
395 KOG2659 LisH motif-containing 44.3 1.9E+02 0.0042 27.1 9.0 91 365-458 29-128 (228)
396 PF15161 Neuropep_like: Neurop 44.3 13 0.00028 25.5 1.1 17 610-627 12-28 (65)
397 PF04190 DUF410: Protein of un 43.5 3.1E+02 0.0068 26.5 14.5 18 271-288 151-168 (260)
398 PF14689 SPOB_a: Sensor_kinase 43.3 40 0.00086 24.2 3.6 43 247-289 7-51 (62)
399 PF11663 Toxin_YhaV: Toxin wit 43.0 26 0.00056 29.6 2.9 33 373-407 106-138 (140)
400 KOG2471 TPR repeat-containing 42.9 4.1E+02 0.0088 28.1 11.7 102 340-444 249-380 (696)
401 KOG0686 COP9 signalosome, subu 42.8 3.7E+02 0.0079 27.7 11.2 60 332-391 151-216 (466)
402 KOG0686 COP9 signalosome, subu 42.7 4E+02 0.0086 27.5 14.7 28 297-324 151-178 (466)
403 KOG2034 Vacuolar sorting prote 42.6 5.7E+02 0.012 29.3 20.9 17 328-344 625-641 (911)
404 KOG2063 Vacuolar assembly/sort 41.8 6.1E+02 0.013 29.4 18.3 27 263-289 506-532 (877)
405 PRK12798 chemotaxis protein; R 41.7 4.2E+02 0.0092 27.5 21.8 154 344-499 125-291 (421)
406 PF11768 DUF3312: Protein of u 41.2 4.3E+02 0.0093 28.5 12.0 55 336-390 413-472 (545)
407 PF04034 DUF367: Domain of unk 40.7 2E+02 0.0043 24.2 7.7 61 432-492 65-126 (127)
408 cd08326 CARD_CASP9 Caspase act 39.8 1.2E+02 0.0026 23.4 6.0 60 221-280 21-80 (84)
409 PF13934 ELYS: Nuclear pore co 39.8 3.3E+02 0.0072 25.7 11.5 116 166-283 76-198 (226)
410 PF11525 CopK: Copper resistan 38.5 13 0.00028 26.9 0.4 22 630-651 8-29 (73)
411 COG2178 Predicted RNA-binding 37.7 3.2E+02 0.007 25.0 9.2 51 341-391 39-98 (204)
412 PHA02875 ankyrin repeat protei 37.1 5E+02 0.011 27.0 18.2 137 42-194 11-158 (413)
413 KOG1308 Hsp70-interacting prot 37.0 18 0.0004 35.7 1.4 88 408-497 125-214 (377)
414 PRK10564 maltose regulon perip 36.9 62 0.0013 31.7 4.9 41 364-404 259-299 (303)
415 PF11848 DUF3368: Domain of un 36.9 1.2E+02 0.0027 20.3 5.0 33 373-405 13-45 (48)
416 COG2909 MalT ATP-dependent tra 36.6 7.1E+02 0.015 28.6 22.9 30 361-390 496-525 (894)
417 KOG4507 Uncharacterized conser 35.6 1.2E+02 0.0026 32.6 6.9 99 293-391 604-705 (886)
418 PF11838 ERAP1_C: ERAP1-like C 35.6 4.5E+02 0.0098 26.0 14.1 156 338-493 45-229 (324)
419 PRK10564 maltose regulon perip 35.4 55 0.0012 32.0 4.3 37 263-299 259-295 (303)
420 KOG3824 Huntingtin interacting 35.1 1E+02 0.0022 30.1 5.9 56 444-499 127-184 (472)
421 PF14689 SPOB_a: Sensor_kinase 35.0 98 0.0021 22.2 4.6 25 401-425 27-51 (62)
422 KOG0991 Replication factor C, 34.5 4.1E+02 0.0089 25.2 11.3 148 236-408 136-283 (333)
423 PF10255 Paf67: RNA polymerase 34.4 2E+02 0.0044 29.8 8.4 27 261-287 164-190 (404)
424 PF14853 Fis1_TPR_C: Fis1 C-te 33.3 1.4E+02 0.0029 20.7 4.8 34 368-403 7-40 (53)
425 KOG0376 Serine-threonine phosp 33.0 1.2E+02 0.0025 31.8 6.3 88 409-499 16-106 (476)
426 KOG2581 26S proteasome regulat 32.7 5.7E+02 0.012 26.4 17.7 61 331-391 209-276 (493)
427 COG4455 ImpE Protein of avirul 32.4 4.3E+02 0.0093 24.8 13.0 72 401-474 5-81 (273)
428 PF11848 DUF3368: Domain of un 32.3 1.3E+02 0.0027 20.3 4.5 30 273-302 14-43 (48)
429 cd08326 CARD_CASP9 Caspase act 31.8 1.4E+02 0.0031 23.0 5.3 63 49-117 18-80 (84)
430 cd00280 TRFH Telomeric Repeat 31.7 2E+02 0.0044 26.0 6.7 28 471-499 117-144 (200)
431 PRK09169 hypothetical protein; 31.6 1.3E+03 0.028 30.1 36.6 397 96-492 160-651 (2316)
432 COG4941 Predicted RNA polymera 31.5 5.5E+02 0.012 25.8 12.1 117 378-498 272-398 (415)
433 PF13762 MNE1: Mitochondrial s 31.5 3.5E+02 0.0075 23.5 11.0 50 361-410 78-128 (145)
434 PRK11639 zinc uptake transcrip 31.4 1.8E+02 0.0039 25.9 6.8 60 389-450 18-77 (169)
435 KOG2063 Vacuolar assembly/sort 31.4 8.9E+02 0.019 28.2 18.2 128 100-242 506-638 (877)
436 KOG0292 Vesicle coat complex C 31.4 7.9E+02 0.017 28.3 12.3 130 340-493 652-781 (1202)
437 PHA02875 ankyrin repeat protei 31.1 6.2E+02 0.013 26.2 17.8 139 109-255 10-157 (413)
438 KOG4642 Chaperone-dependent E3 30.9 4.2E+02 0.009 25.3 8.8 117 341-459 20-143 (284)
439 COG0735 Fur Fe2+/Zn2+ uptake r 30.8 2.4E+02 0.0051 24.5 7.2 60 388-449 12-71 (145)
440 COG2909 MalT ATP-dependent tra 30.7 8.8E+02 0.019 27.9 35.1 86 273-358 427-524 (894)
441 KOG0545 Aryl-hydrocarbon recep 30.7 4.9E+02 0.011 24.9 11.0 63 436-498 233-297 (329)
442 cd02679 MIT_spastin MIT: domai 30.6 1.1E+02 0.0023 23.3 4.3 37 478-514 21-68 (79)
443 KOG1811 Predicted Zn2+-binding 30.3 7.2E+02 0.016 27.0 11.4 65 434-499 557-621 (1141)
444 cd08332 CARD_CASP2 Caspase act 30.2 2.2E+02 0.0048 22.3 6.2 49 228-276 32-80 (90)
445 COG5108 RPO41 Mitochondrial DN 30.0 3.5E+02 0.0075 29.8 9.2 23 204-226 33-55 (1117)
446 PRK10941 hypothetical protein; 30.0 5.1E+02 0.011 25.2 10.0 58 366-425 185-243 (269)
447 PF15469 Sec5: Exocyst complex 29.9 4.1E+02 0.009 23.9 10.5 23 403-425 92-114 (182)
448 smart00386 HAT HAT (Half-A-TPR 29.7 60 0.0013 18.8 2.5 21 479-499 1-21 (33)
449 KOG2297 Predicted translation 29.4 5.7E+02 0.012 25.3 10.1 72 409-486 267-342 (412)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 29.4 3.4E+02 0.0074 22.8 8.4 43 314-356 81-124 (126)
451 KOG3807 Predicted membrane pro 29.2 1.4E+02 0.0031 29.4 5.9 111 368-499 281-396 (556)
452 cd00280 TRFH Telomeric Repeat 28.9 3.4E+02 0.0074 24.6 7.6 19 406-424 120-138 (200)
453 PF11768 DUF3312: Protein of u 28.8 3.8E+02 0.0082 28.9 9.3 23 204-226 413-435 (545)
454 KOG1550 Extracellular protein 28.3 8.2E+02 0.018 26.8 21.2 140 46-194 228-390 (552)
455 PF09986 DUF2225: Uncharacteri 27.3 4.6E+02 0.01 24.4 9.0 30 466-495 166-195 (214)
456 PF10255 Paf67: RNA polymerase 27.1 3.7E+02 0.0081 27.9 8.8 50 205-254 128-188 (404)
457 KOG0687 26S proteasome regulat 26.9 6.5E+02 0.014 25.2 10.7 10 587-596 320-329 (393)
458 COG0790 FOG: TPR repeat, SEL1 26.7 6E+02 0.013 24.7 17.2 184 310-498 55-270 (292)
459 COG2256 MGS1 ATPase related to 26.1 7.6E+02 0.016 25.7 11.9 52 259-310 244-298 (436)
460 PRK14962 DNA polymerase III su 26.0 7.4E+02 0.016 26.5 11.3 29 272-300 254-282 (472)
461 PF08225 Antimicrobial19: Pseu 25.5 42 0.00091 17.8 0.9 12 615-626 10-21 (23)
462 KOG4077 Cytochrome c oxidase, 25.2 3.3E+02 0.007 23.0 6.4 44 281-324 69-112 (149)
463 PRK13184 pknD serine/threonine 24.4 1.2E+03 0.026 27.5 24.9 100 100-225 477-578 (932)
464 PRK09169 hypothetical protein; 24.2 1.7E+03 0.037 29.1 39.2 427 63-491 160-692 (2316)
465 KOG3364 Membrane protein invol 24.1 4.6E+02 0.01 22.5 7.8 64 394-459 29-97 (149)
466 KOG2908 26S proteasome regulat 23.9 5.1E+02 0.011 26.0 8.5 63 343-405 87-164 (380)
467 COG0735 Fur Fe2+/Zn2+ uptake r 23.7 3.6E+02 0.0079 23.3 7.1 61 285-346 10-70 (145)
468 PLN03192 Voltage-dependent pot 23.7 8.5E+02 0.018 28.3 12.2 194 87-285 476-676 (823)
469 KOG2582 COP9 signalosome, subu 23.6 7.9E+02 0.017 25.0 10.6 228 63-326 73-346 (422)
470 PF08967 DUF1884: Domain of un 23.4 1.1E+02 0.0023 23.3 3.0 28 543-570 6-33 (85)
471 KOG3636 Uncharacterized conser 23.3 5.2E+02 0.011 26.9 8.7 84 289-373 176-271 (669)
472 PF14669 Asp_Glu_race_2: Putat 23.3 5.9E+02 0.013 23.4 16.0 55 302-356 138-206 (233)
473 PF09670 Cas_Cas02710: CRISPR- 23.0 8.4E+02 0.018 25.1 12.2 55 270-325 140-198 (379)
474 PF11817 Foie-gras_1: Foie gra 22.9 2.5E+02 0.0055 26.8 6.6 11 474-484 227-237 (247)
475 PF07575 Nucleopor_Nup85: Nup8 22.9 1E+03 0.022 26.1 12.5 32 191-222 397-428 (566)
476 cd07153 Fur_like Ferric uptake 22.8 1.9E+02 0.0041 23.6 5.1 46 368-413 6-51 (116)
477 PRK11639 zinc uptake transcrip 22.8 3.9E+02 0.0085 23.8 7.3 58 289-347 19-76 (169)
478 KOG4567 GTPase-activating prot 22.8 7.6E+02 0.017 24.5 9.9 78 281-363 263-350 (370)
479 PRK13342 recombination factor 21.3 9.5E+02 0.021 25.1 14.5 47 263-309 229-278 (413)
480 cd08323 CARD_APAF1 Caspase act 21.2 4E+02 0.0087 20.7 6.5 58 221-278 19-76 (86)
481 PF12926 MOZART2: Mitotic-spin 21.1 4E+02 0.0088 20.7 6.8 42 317-358 29-70 (88)
482 PRK15180 Vi polysaccharide bio 20.9 1E+03 0.022 25.3 13.5 126 408-537 300-441 (831)
483 PF14863 Alkyl_sulf_dimr: Alky 20.8 5.5E+02 0.012 22.1 8.0 53 449-507 57-109 (141)
484 KOG3507 DNA-directed RNA polym 20.6 31 0.00068 24.0 -0.1 12 611-622 20-31 (62)
485 KOG4334 Uncharacterized conser 20.5 94 0.002 32.3 3.1 151 21-181 408-573 (650)
486 PF01475 FUR: Ferric uptake re 20.5 1.7E+02 0.0037 24.1 4.4 46 367-412 12-57 (120)
487 PF03745 DUF309: Domain of unk 20.5 1.9E+02 0.0041 20.8 3.9 35 108-142 9-43 (62)
488 PRK02287 hypothetical protein; 20.4 6.2E+02 0.014 22.6 8.1 61 433-493 107-168 (171)
489 KOG4567 GTPase-activating prot 20.4 8.5E+02 0.019 24.2 10.0 73 382-460 263-345 (370)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-124 Score=1062.47 Aligned_cols=629 Identities=36% Similarity=0.640 Sum_probs=613.3
Q ss_pred cccccCCCCCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCC
Q 006246 17 EEISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP 96 (654)
Q Consensus 17 ~~~~~~g~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~ 96 (654)
..|...|+.||.+||++++ ++|+..+++..+.++|..+++.|+.||+.++|+||++|++ +|++++|+++|++|++|
T Consensus 176 ~~M~~~g~~Pd~~t~~~ll--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 176 HRMLWAGVRPDVYTFPCVL--RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK--CGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHcCCCCChhHHHHHH--HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc--CCCHHHHHHHHhcCCCC
Confidence 3567789999999999997 4899999999999999999999999999999999999999 99999999999999999
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHH
Q 006246 97 NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176 (654)
Q Consensus 97 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 176 (654)
|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.++|..+.+.|+.||..+||+|+.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----C------------------------
Q 006246 177 MYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----K------------------------ 228 (654)
Q Consensus 177 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~------------------------ 228 (654)
+|+++|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|.+ |
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999852 3
Q ss_pred -----------CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 006246 229 -----------NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF 297 (654)
Q Consensus 229 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 297 (654)
+..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 4556788999999999999999999999999999999999999999999999999999986 5999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR 377 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 377 (654)
||+.++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (654)
.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999778999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--------------CchHHHHHHHHHHhcCCccCCcee
Q 006246 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSS 523 (654)
Q Consensus 458 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~~g~~~~~~~s 523 (654)
+|+.+||..+|++|+.+|..+|+.+.|+.+++++++++|++. +|++|.++++.|+++|++|+||+|
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhccchhhhhHHHHHHhcccCCCCC
Q 006246 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGA 603 (654)
Q Consensus 524 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~ 603 (654)
||++++.+|.|++||.+||+.++||.+|++|..+|++.||+||++.+++ .++++|+..+++||||||+|||||+||+|+
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~ 808 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGM 808 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCC
Confidence 9999999999999999999999999999999999999999999998884 478899999999999999999999999999
Q ss_pred cEEEecccccCcchhhHHHhHhhhcCceEEEecCCccccccCccccCCC
Q 006246 604 TIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCSCND 652 (654)
Q Consensus 604 ~~~~~~~l~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc~~ 652 (654)
||||+||||||+|||+++||||++.+|+|||||.+|||||+||+|||||
T Consensus 809 ~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 809 PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-116 Score=976.45 Aligned_cols=565 Identities=33% Similarity=0.615 Sum_probs=484.7
Q ss_pred CCCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHH
Q 006246 24 IPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103 (654)
Q Consensus 24 ~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 103 (654)
+.||..||+.++. +|++.++++.+.++|..+.+.|+.||+.++|.|+++|++ +|++++|+++|++|++||+++||+
T Consensus 119 ~~~~~~t~~~ll~--a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~~~~~~t~n~ 194 (697)
T PLN03081 119 FTLPASTYDALVE--ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK--CGMLIDARRLFDEMPERNLASWGT 194 (697)
T ss_pred CCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--CCCHHHHHHHHhcCCCCCeeeHHH
Confidence 4455555555542 455555555555555555555555555555555555555 555555555555555555555555
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 006246 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183 (654)
Q Consensus 104 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (654)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|.
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~--------------- 259 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT--------------- 259 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc---------------
Confidence 55555555555555555555555555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhH
Q 006246 184 VNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT 263 (654)
Q Consensus 184 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 263 (654)
.+|++|+++|+++|++++|.++|++|.++|+++
T Consensus 260 -----------------------------------------------~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 260 -----------------------------------------------FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292 (697)
T ss_pred -----------------------------------------------eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence 444455555566666777777788888889999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 006246 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343 (654)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 343 (654)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..+.+.|+.+|..++++|+++|+|
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006246 344 CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 423 (654)
+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC----
Q 006246 424 QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---- 499 (654)
Q Consensus 424 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---- 499 (654)
.+.+|+.|+..+|++|+++|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 9878999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----------CchHHHHHHHHHHhcCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCc
Q 006246 500 ----------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQ 569 (654)
Q Consensus 500 ----------~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~pd~~~ 569 (654)
+|++|.++++.|+++|+++.|++||+++++.+|.|++||.+||+.++|+..++++..+|++.||+||+.+
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhccchhhhhHHHHHHhcccCCCCCcEEEecccccCcchhhHHHhHhhhcCceEEEecCCccccccCcccc
Q 006246 570 VLFDIDEEEKETAPKYHSEKLAIAFGFINTDPGATIRVIKNLRVCEDCHSATKLISKVFKRDIIVRDRVRYHHFRNGKCS 649 (654)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~f~~g~cs 649 (654)
++|++++++|+..+.+||||||+||||+++|+|+||||+||||||+|||+|+|+||++++|+|||||.+|||||+||+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 006246 650 CNDFW 654 (654)
Q Consensus 650 c~~~~ 654 (654)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-74 Score=657.19 Aligned_cols=607 Identities=25% Similarity=0.404 Sum_probs=536.6
Q ss_pred cccCCCCCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCc
Q 006246 19 ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98 (654)
Q Consensus 19 ~~~~g~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~ 98 (654)
|...|++|+..+|..++ ++|...+.++.|.++|+.+++.|..+++.++|+|+++|++ +|+++.|+++|++|++||+
T Consensus 77 m~~~g~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--~g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 77 MQELRVPVDEDAYVALF--RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--FGELVHAWYVFGKMPERDL 152 (857)
T ss_pred HHhcCCCCChhHHHHHH--HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--CCChHHHHHHHhcCCCCCe
Confidence 56688999999999997 4899999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 178 (654)
++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..++++.+.++|..+++.|+.||..++|+|+.+|
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-------------------------------
Q 006246 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD------------------------------- 227 (654)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------------- 227 (654)
+++|++++|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.+
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999953
Q ss_pred --------CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchH
Q 006246 228 --------KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299 (654)
Q Consensus 228 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (654)
||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChh
Q 006246 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379 (654)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 379 (654)
+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++
T Consensus 473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 99999999986 59999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCCC-------------CchHHHHHHHHHH-hcCCccCCcee
Q 006246 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE--MEPQNR-------------RCDDVAKMRKLMK-ERGIKTNPGSS 523 (654)
Q Consensus 460 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~-------------~~~~a~~~~~~m~-~~g~~~~~~~s 523 (654)
.||.++|++|+.+|.++|+.++|.++|++|.+ +.|+.. .+++|.++++.|+ +.|+.|+...+
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 79999999999999999999999999999998 567765 8999999999998 67988875443
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhccchhhhhHHH-HHHhcccCCCC
Q 006246 524 MIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEKETAPKYHSEKLA-IAFGFINTDPG 602 (654)
Q Consensus 524 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~ 602 (654)
...+. ....-+..++++. ++++| +..||...+-..+..+.....+ .-.|+.| ..+.+.|...+
T Consensus 629 ~~lv~--------~l~r~G~~~eA~~----~~~~m---~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 629 ACVVD--------LLGRAGKLTEAYN----FINKM---PITPDPAVWGALLNACRIHRHV-ELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHH--------HHHhCCCHHHHHH----HHHHC---CCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcc
Confidence 22111 1111234455544 44444 5788877655444443221111 1122222 23456666566
Q ss_pred CcEEEecccccCcchhhHHHhHhhhcCceEEE-------ecCCccccccCcccc
Q 006246 603 ATIRVIKNLRVCEDCHSATKLISKVFKRDIIV-------RDRVRYHHFRNGKCS 649 (654)
Q Consensus 603 ~~~~~~~~l~~c~~~h~~~~~~s~~~~~~~~~-------~d~~~~h~f~~g~cs 649 (654)
..+.+..-....|+..++.+....|..+.+-- --.+..|-|..|--|
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 65555555677899999999999888774321 113567888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=564.40 Aligned_cols=492 Identities=18% Similarity=0.258 Sum_probs=454.7
Q ss_pred CCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCC-CCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHH
Q 006246 25 PTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGH-FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS 103 (654)
Q Consensus 25 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 103 (654)
.++...|..++. .+.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+ .|.+++|..+|+.|+.||..+||.
T Consensus 367 ~~~~~~~~~~y~--~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~~pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYN--RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIRNPTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHH--HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 345556777764 67788999999999999999986 5678888999999999 999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 006246 104 VLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183 (654)
Q Consensus 104 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (654)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC----CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 006246 184 VNKARQILDDG----SKSDVICWNALIDGYLKCGDIEGAKELFKSTK------DKNTGSYNAMISGFARFGRFEEARKLF 253 (654)
Q Consensus 184 ~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~ 253 (654)
+++|.++|++| ..||..+||.||.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999987 57899999999999999999999999999995 489999999999999999999999999
Q ss_pred HhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006246 254 NEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329 (654)
Q Consensus 254 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (654)
+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99986 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMK----MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 405 (654)
|..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH----HcC-------------------CHHHHHHHHHhC---
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG----RAG-------------------YLAEAEEVISSM--- 459 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m--- 459 (654)
+|++.|++++|.++|..|.+. |+.||..+|++|+.++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999985 99999999999997643 222 346899999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCC----------Cc-hHHHHHHHHHHhcCCccCCc
Q 006246 460 PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEM--EPQNR----------RC-DDVAKMRKLMKERGIKTNPG 521 (654)
Q Consensus 460 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~----------~~-~~a~~~~~~m~~~g~~~~~~ 521 (654)
++.||..+|+.++..+.+.+..+.+..+++.+... .|+.. .+ ++|..+++.|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 68999999999998877888888888887765431 12221 34 48999999999999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-60 Score=532.82 Aligned_cols=453 Identities=19% Similarity=0.299 Sum_probs=420.8
Q ss_pred CCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcc-----hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH
Q 006246 62 FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVF-----VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTY 136 (654)
Q Consensus 62 ~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 136 (654)
.++...|..+++.+++ +|++++|+++|+.|++++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||
T Consensus 367 ~~~~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4577788999999999 99999999999999976655 455677789999999999999999974 999999
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhhHHHHHHHHHHc
Q 006246 137 PTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS----KSDVICWNALIDGYLKC 212 (654)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 212 (654)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999984 68999999999999999
Q ss_pred CCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHhcC------CCCHhHHHHHHHHHHhcCChHHHHH
Q 006246 213 GDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMN------DKDEITWSAIIDGYTKDGYYKEALE 282 (654)
Q Consensus 213 g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 282 (654)
|++++|.++|++|.+ ||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999964 899999999999999999999999999995 4799999999999999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---
Q 006246 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--- 359 (654)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 359 (654)
+|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.|++++|.++|++|.+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHH
Q 006246 360 -KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438 (654)
Q Consensus 360 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~ 438 (654)
+|..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+. |+.||..+|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999985 99999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC----Cc-hHHHHHHHH
Q 006246 439 IVDLLGRAGYLAEAEEVISSM---PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR----RC-DDVAKMRKL 510 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~-~~a~~~~~~ 510 (654)
++.+|++.|++++|.+++++| ++.||..+|++|+..|.+ +++++....+.+...++.+. .| ++|..+++.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 999999999999999999999 688999999999987763 57777777666666554432 34 679999999
Q ss_pred HHhcCCccCCcee
Q 006246 511 MKERGIKTNPGSS 523 (654)
Q Consensus 511 m~~~g~~~~~~~s 523 (654)
|.+.|+.|+....
T Consensus 838 M~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 838 TISAGTLPTMEVL 850 (1060)
T ss_pred HHHCCCCCCHHHH
Confidence 9999999886443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-53 Score=472.77 Aligned_cols=452 Identities=17% Similarity=0.249 Sum_probs=403.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHH
Q 006246 95 KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVD-SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSS 173 (654)
Q Consensus 95 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (654)
+++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.|.++|..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5678899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHH
Q 006246 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFARFGRFEEA 249 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A 249 (654)
|+++|+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+ ||..+|+.++.++++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 7899999999999999999999
Q ss_pred HHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006246 250 RKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN 325 (654)
Q Consensus 250 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (654)
.+++..+.+ +|..+||++|.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|.+|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999887763 689999999999999999999999999995 468999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 006246 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401 (654)
Q Consensus 326 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 401 (654)
|+.||..+|++++.+|++.|++++|.++++.|.+ +|..+||+||.+|++.|+.++|.++|++|. +||..||+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHH
Confidence 9999999999999999999999999999999975 688999999999999999999999999996 47999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM----PMEPNAAVWEALLGACRK 477 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~ 477 (654)
.+|.+|++.|+.++|.++|++|.+. |+.||..+|+.++.+|++.|.+++|.++|+.| ++.|+..+|+.++.+|.+
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999999985 99999999999999999999999999999999 578999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCC-------------CchHHHHHHHHHHhcCCccCCceeEEEECCEEEEEeeCCCCCcch
Q 006246 478 HGEVEFGERLGKILLEMEPQNR-------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTGDGSHPQV 544 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~~-------------~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~ 544 (654)
.|++++|.++++++ ...|+.. +++.+..+.+.+.+ +.|+....++.+ +..+...++.
T Consensus 475 ~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L-------~~~y~~~G~~ 544 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVL-------LNLYNSSGRQ 544 (697)
T ss_pred cCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHH-------HHHHHhCCCH
Confidence 99999999998875 2445442 67778887777753 333311111111 1112233444
Q ss_pred HHHHHHHHHHHHHHHHcCcc--cCCCc
Q 006246 545 KEIYLMLKKIIEKLKMEGYS--PNSSQ 569 (654)
Q Consensus 545 ~~~~~~l~~l~~~~~~~g~~--pd~~~ 569 (654)
+++. ++++.|++.|.. |..++
T Consensus 545 ~~A~----~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 545 AEAA----KVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHH----HHHHHHHHcCCccCCCeeE
Confidence 4444 488889999976 44444
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.2e-32 Score=226.35 Aligned_cols=106 Identities=63% Similarity=1.022 Sum_probs=97.1
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hccchhhhhHHHH
Q 006246 521 GSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPNSSQVLFDIDEEEK--------ETAPKYHSEKLAI 592 (654)
Q Consensus 521 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 592 (654)
++||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6789876 9999999999998 466777889999999999998888765 5578999999999
Q ss_pred HHhcccCCCCCcEEEeccc-ccCcchhhHHHhHhhhcCceEEEecCCcccccc
Q 006246 593 AFGFINTDPGATIRVIKNL-RVCEDCHSATKLISKVFKRDIIVRDRVRYHHFR 644 (654)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~l-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~f~ 644 (654)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.8e-27 Score=274.10 Aligned_cols=406 Identities=12% Similarity=0.052 Sum_probs=272.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 006246 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180 (654)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 180 (654)
+..++..+.+.|++++|+.+++++... .+++..++..+...+...|+.++|.+.+..+++.. +.+...+..+..++..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 333444444555555555555555442 23344555566666666666666666666666543 3344455566666666
Q ss_pred cCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006246 181 FGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFN 254 (654)
Q Consensus 181 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (654)
.|++++|.+.|+++ .+.+..++..+...+.+.|+.++|..+|+++.+ .+...+..++..|.+.|++++|..+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666654 334555666666666667777777777666643 234456666777777777777777777
Q ss_pred hcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 006246 255 EMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA 331 (654)
Q Consensus 255 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 331 (654)
.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 6653 255667777777777777777777777776643 3344556666677777777777777777776654 3456
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 408 (654)
..+..++..+.+.|++++|.++++.+.. .+...|..+...+...|++++|++.|+++...+ |+..++..+..++.
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 6677777777777777777777777764 255667777777777888888888888777753 44466667777777
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChHHHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM--PMEPNAAVWEALLGACRKHGEVEFGER 486 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 486 (654)
+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..++++.++..+...+...|+ ++|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 888888888888877763 3455667777778888888888888888776 233467778888888888888 77888
Q ss_pred HHHHHHhcCCCCC--------------CchHHHHHHHHHHhcC
Q 006246 487 LGKILLEMEPQNR--------------RCDDVAKMRKLMKERG 515 (654)
Q Consensus 487 ~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~~g 515 (654)
.+++++++.|+++ ++++|.+.++.+.+.+
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888776 6777777777776544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4e-27 Score=273.90 Aligned_cols=460 Identities=11% Similarity=0.053 Sum_probs=382.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVI 118 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 118 (654)
..|+++.|...+..+.+.... +......++..|.+ .|++++|..+++.+. .++...|+.+...+...|++++|.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLR--SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 344444444444444443321 22334445556666 677777777776665 246678999999999999999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 006246 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG---S 195 (654)
Q Consensus 119 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~ 195 (654)
..|+++.+.. +.+...+..+...+...|++++|.+.++.+++.+ +.+..++..+...|.+.|+.++|...|+++ .
T Consensus 486 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 486 EAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998753 2345567777788889999999999999999875 457788999999999999999999999986 4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 006246 196 KSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIID 269 (654)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 269 (654)
+.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|...|+.+.+ .+...|..+..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45677888999999999999999999999875 4667899999999999999999999998864 36778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 006246 270 GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349 (654)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 349 (654)
.|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 4456788889999999999999999999998876 4567788889999999999999
Q ss_pred HHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 350 AWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 350 A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
|.+.|+.+.. ++..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+.
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 799 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK- 799 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-
Confidence 9999998865 455778889999999999999999999998864 457778888999999999999999999999874
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC------
Q 006246 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------ 499 (654)
Q Consensus 428 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------ 499 (654)
.+++...+..+..++...|+ .+|++.++++ ...| +..++..+...+...|++++|...++++++.+|.++
T Consensus 800 -~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 800 -APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred -CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 35667889999999999999 8899999987 3333 577888999999999999999999999999999876
Q ss_pred --------CchHHHHHHHHHH
Q 006246 500 --------RCDDVAKMRKLMK 512 (654)
Q Consensus 500 --------~~~~a~~~~~~m~ 512 (654)
++++|.++++.|.
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 6777777776654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.8e-19 Score=208.53 Aligned_cols=461 Identities=12% Similarity=0.070 Sum_probs=295.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--CCc-chH------------
Q 006246 37 ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--PNV-FVW------------ 101 (654)
Q Consensus 37 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~~~-~~~------------ 101 (654)
.+.....++.+.|++.+.+++... +.++.++..+...+.+ .|+.++|.+.+++..+ |+- ..+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~--~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLR--QGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence 456778889999999999888764 3367888888888888 9999999999998863 332 222
Q ss_pred ----HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHH
Q 006246 102 ----NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF-TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ 176 (654)
Q Consensus 102 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 176 (654)
..+...+.+.|++++|+..|+++.... +|+.. ............++.++|...++.+++.. +.+...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223346788999999999999998653 33322 11111222334688999999999999875 456778889999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC------hhh-----------------HH------------------------------
Q 006246 177 MYACFGCVNKARQILDDGSKSD------VIC-----------------WN------------------------------ 203 (654)
Q Consensus 177 ~y~~~g~~~~A~~~~~~~~~~~------~~~-----------------~~------------------------------ 203 (654)
.+...|+.++|.+.|+++.... ... +.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999988752111 000 00
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---HhHHHH-----
Q 006246 204 ----ALIDGYLKCGDIEGAKELFKSTKD--K-NTGSYNAMISGFARFGRFEEARKLFNEMND--KD---EITWSA----- 266 (654)
Q Consensus 204 ----~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~----- 266 (654)
.....+...|++++|+..|++..+ | +...+..+...|.+.|++++|...|++..+ |+ ...|..
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 112345667888888888887765 3 566778888888888888888888887764 21 112222
Q ss_pred -------HHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 267 -------IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 267 -------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+.+.+.. +.+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2345667888888888888888763 2344556667778888888888888888888754 223444444544
Q ss_pred HHHHcCCHHHHHHHHhhcCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMKE------------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSA 406 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~ 406 (654)
.|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++.++. .| +...+..+...
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQD 504 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 443 234455555554443211 112333444455556666666666665553 23 23344455555
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCC-cchH--------------------------------------------HHHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPE-VEHY--------------------------------------------GCIVD 441 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~--------------------------------------------~~li~ 441 (654)
+.+.|++++|...++++.+. .|+ ...+ ..+.+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 56666666666666655442 121 1111 12234
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--------------CchHHHHH
Q 006246 442 LLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKM 507 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~ 507 (654)
.+...|+.++|+++++.-| ++...+..+...+...|++++|+..|+++++.+|++. ++++|.+.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555666666666666332 3455566677777778888888888888888888775 66666666
Q ss_pred HHHHH
Q 006246 508 RKLMK 512 (654)
Q Consensus 508 ~~~m~ 512 (654)
++...
T Consensus 660 l~~ll 664 (1157)
T PRK11447 660 LAKLP 664 (1157)
T ss_pred HHHHh
Confidence 66443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=3.4e-19 Score=208.93 Aligned_cols=465 Identities=11% Similarity=0.040 Sum_probs=262.8
Q ss_pred hhhcCCCChHHHHHHHHHHHHhCCCCchhH-HHHHHHhcccccCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCC
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSGHFQDHYV-SGTLVKCHANSRFSNFELALKVFNSVHK--P-NVFVWNSVLRACLEHNE 113 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 113 (654)
+.+...|++++|.+.+..+++... |+... ...+...... .|+.++|++.|+++.. | +...+..+...+...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~--~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKL--PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhC--CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 356778999999999999987643 33221 1111222233 6899999999999873 3 45578888888999999
Q ss_pred chHHHHHHHHhHhCCCC----------------CCcc---cHHHH----------------------------------H
Q 006246 114 PWRVISLYSEMVGVDSK----------------PNKF---TYPTV----------------------------------F 140 (654)
Q Consensus 114 ~~~A~~~~~~m~~~g~~----------------p~~~---t~~~l----------------------------------l 140 (654)
+++|+..|+++...... ++.. .+... -
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 99999999988653210 0000 01000 1
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhhHHHH----------
Q 006246 141 KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK--SD---VICWNAL---------- 205 (654)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~l---------- 205 (654)
.++...|++++|...++++++.. +.+..++..+...|.+.|++++|+..|++... |+ ...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 12334455555555555555543 23445555555555555666666555555311 11 1112111
Q ss_pred --HHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCCh
Q 006246 206 --IDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND--K-DEITWSAIIDGYTKDGYY 277 (654)
Q Consensus 206 --i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 277 (654)
...+.+.|++++|+..|++..+ .+...+..+...|...|++++|++.|+++.+ | +...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2234455556666665555543 2233444555555555666666666555543 1 2334444444442 2344
Q ss_pred HHHHHHHHHHHhCCCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 006246 278 KEALEVFNEMQRDKIK--------PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDM 349 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 349 (654)
++|+.+++.+...... .....+..+...+...|++++|.+.++++++.. +.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5555444433211000 001122233444556677777777777777654 2345566667777777777777
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH---------HHHHHHHHHHccCCHHHHH
Q 006246 350 AWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI---------TFACVLSACAHAGMIDRGL 417 (654)
Q Consensus 350 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a~ 417 (654)
|...|+++.. .+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 7777776643 244444444445556667777777666654322221111 1223344556666677766
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 418 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
++++ . .+++...+..+.+.+.+.|++++|++.|++. ...| +...+..+...+...|++++|+..++++++..
T Consensus 594 ~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 6655 1 1334455666777777777777777777766 2334 46677777777777777777777777777777
Q ss_pred CCCC--------------CchHHHHHHHHHHhc
Q 006246 496 PQNR--------------RCDDVAKMRKLMKER 514 (654)
Q Consensus 496 p~~~--------------~~~~a~~~~~~m~~~ 514 (654)
|++. ++++|.++++.+.+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7665 566677666665543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-19 Score=179.64 Aligned_cols=419 Identities=12% Similarity=0.079 Sum_probs=319.5
Q ss_pred HHHHHhcccccCCChHHHHHHHhcCCCCC-cchHH--HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 006246 69 GTLVKCHANSRFSNFELALKVFNSVHKPN-VFVWN--SVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145 (654)
Q Consensus 69 ~~Li~~y~~~~~g~~~~A~~~f~~~~~~~-~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 145 (654)
..|..-..+ .|++.+|++.-...-+.| ..+=+ .+-..+.+..+.+....--....+. .+.-..+|+.+.+.+-.
T Consensus 52 l~lah~~yq--~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 52 LELAHRLYQ--GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHh--ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 344444455 688888887665443221 11111 1223344555555443332222221 12245678888888888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCh--hhH-HHHHHHHHHcCCHHHHHHHH
Q 006246 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV--ICW-NALIDGYLKCGDIEGAKELF 222 (654)
Q Consensus 146 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~ 222 (654)
.|+++.|..++..+++.. +..+..|..+..++...|+.+.|.+.|.+...-|+ ... +.+...+-..|++++|...|
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 888888888888888764 34566788888888888888888888877643333 322 23334445578888888888
Q ss_pred HhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C
Q 006246 223 KSTKDKN---TGSYNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP-R 295 (654)
Q Consensus 223 ~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 295 (654)
.+..+.+ .+.|+.|...+-..|++-.|+..|++...-| ...|-.|...|...+.+++|+..|.+.... .| .
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 7776533 4578889989999999999999999887643 457888889999999999999999888765 44 4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 006246 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGL 372 (654)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 372 (654)
...+..+...|-..|.++.|+..|++.++.. +.-...|+.|..++-..|++.+|.+.|.+... ....+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5567777777888999999999999998865 23467899999999999999999999998765 3567889999999
Q ss_pred HHcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHH
Q 006246 373 AMHGRADDAIELFFKMQREKMRPDR-ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~ 450 (654)
...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999887 45554 4788999999999999999999998874 6787 668999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 451 EAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 451 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|++.+.+. .+.|. ....+.|...|...|++++|+..|+.+++++|+.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 999999987 55665 77889999999999999999999999999999987
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=3.4e-17 Score=183.78 Aligned_cols=444 Identities=9% Similarity=0.053 Sum_probs=291.7
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCCchH
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--PNVFVWNSVLRACLEHNEPWR 116 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~ 116 (654)
.....|+++.|...+.++++..+. ++.++..|...|.+ .|+.++|+..+++..+ |+-..|..++..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~--~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRH--FGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChh
Confidence 344569999999999999998755 48899999999999 9999999999998874 3222233323222 77788
Q ss_pred HHHHHHHhHhCCC------------------------------------CC--CcccHHHH-HHHHhccCCcHHHHHHHH
Q 006246 117 VISLYSEMVGVDS------------------------------------KP--NKFTYPTV-FKACSITEADKEGVQVHA 157 (654)
Q Consensus 117 A~~~~~~m~~~g~------------------------------------~p--~~~t~~~l-l~~~~~~~~~~~a~~~~~ 157 (654)
|..+|+++..... .| +....... .+.+...++++++..++.
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 8888888876421 11 12212222 445566677777777777
Q ss_pred HHHHhCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-----CCcc
Q 006246 158 HVVKNGLCGDVHVKSSGIQMYAC-FGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-----KNTG 231 (654)
Q Consensus 158 ~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~ 231 (654)
.+.+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|.++++++.. |+..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 777765 3344445556666666 355 7777776655556788888999999999999999999988762 1000
Q ss_pred hH------------------------------------------------------------------------------
Q 006246 232 SY------------------------------------------------------------------------------ 233 (654)
Q Consensus 232 ~~------------------------------------------------------------------------------ 233 (654)
+|
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 00
Q ss_pred ---------------HHHHHHHHhcCCHHHHHHHHHhcCC-C--------------------------------------
Q 006246 234 ---------------NAMISGFARFGRFEEARKLFNEMND-K-------------------------------------- 259 (654)
Q Consensus 234 ---------------~~li~~~~~~g~~~~A~~~~~~~~~-~-------------------------------------- 259 (654)
-.+.-...+.|+.++|.++|+.... +
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 0000011345556666666555432 0
Q ss_pred -------------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 006246 260 -------------------------------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308 (654)
Q Consensus 260 -------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (654)
+...|..+..++.. +++++|+..|.+.... .|+......+..++..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHH
Confidence 11223333333333 4555666655555543 3444333333344456
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHH---HHHHHHHHcCChhHHHHHH
Q 006246 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN---AMIGGLAMHGRADDAIELF 385 (654)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~ 385 (654)
.|++++|...++.+... +|+...+..+...+.+.|+.++|.+.|++....+...++ .+.......|++++|+..|
T Consensus 522 ~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 522 VEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777777776543 233334455666777777888777777776653322222 2233334458888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 006246 386 FKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP- 463 (654)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 463 (654)
++..+. .|+...+..+...+.+.|+.++|...+++..+. -+.+...+..+..++...|++++|++.+++. ...|
T Consensus 600 ~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 600 TRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888774 567777888888888888888888888888763 2333556777778888888999998888876 3444
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 464 NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 464 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
++..+..+..++...|++++|+..++++++++|++.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 577888888899999999999999999999998886
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-19 Score=176.69 Aligned_cols=422 Identities=14% Similarity=0.137 Sum_probs=334.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCchHHH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPWRVI 118 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 118 (654)
..|++.+|.+--..+-.... .+....-.+-..|.. ..+++....--....+ .-..+|..+...+-..|++++|+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q--~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQ--GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred hccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhc--ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 45677777665444443321 111122222244444 4455544332222222 23457999999999999999999
Q ss_pred HHHHHhHhCCCCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh-hHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 006246 119 SLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH-VKSSGIQMYACFGCVNKARQILDDGSK 196 (654)
Q Consensus 119 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~ 196 (654)
.+++.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.. |+.. +.+.+-...-..|++++|...+.+...
T Consensus 137 ~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999985 45 45688888899999999999999999999864 5544 444555666678999999998887533
Q ss_pred ---CChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHH
Q 006246 197 ---SDVICWNALIDGYLKCGDIEGAKELFKSTKDKN---TGSYNAMISGFARFGRFEEARKLFNEMND--K-DEITWSAI 267 (654)
Q Consensus 197 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 267 (654)
-=.+.|+.|...+-.+|+...|+..|++..+-| ...|-.|.+.|...+.++.|...+.+... | ..+.+..|
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 346789999999999999999999999998754 35789999999999999999999998764 3 56788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 268 IDGYTKDGYYKEALEVFNEMQRDKIKPR-KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
...|...|..+-|+..|++.++. .|+ ...|+.+..++-..|+..+|.+.|...+... +......+.|...|...|.
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK 369 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999875 454 4689999999999999999999999999875 3346677889999999999
Q ss_pred HHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 006246 347 LDMAWKVFEDMKMKE---VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTY 422 (654)
Q Consensus 347 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 422 (654)
+++|..+|.....-. ....|.|...|-++|+.++|+..|++.++ ++|+.. .|+.+...|-..|+++.|.+.+.+
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 999999999887632 35789999999999999999999999987 678764 899999999999999999999999
Q ss_pred HHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHh
Q 006246 423 MQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKH 478 (654)
Q Consensus 423 ~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 478 (654)
... +.|. .+..+.|...|...|++.+|++-++.. +++|| +..+-.++....--
T Consensus 448 AI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 448 AIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 885 4665 667899999999999999999999987 67787 55566666554433
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.5e-19 Score=187.30 Aligned_cols=287 Identities=15% Similarity=0.128 Sum_probs=137.9
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCCH
Q 006246 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD---VHVKSSGIQMYACFGCV 184 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~ 184 (654)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345556666666666666542 11233455555555566666666666665554321111 13445556666666666
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCc--------chHHHHHHHHHhcCCHHHHHHHH
Q 006246 185 NKARQILDDGSK---SDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT--------GSYNAMISGFARFGRFEEARKLF 253 (654)
Q Consensus 185 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 253 (654)
++|..+|+++.. .+..+++.++..|.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666665522 3445566666666666666666666665543211 12233444445555555555555
Q ss_pred HhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 006246 254 NEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330 (654)
Q Consensus 254 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (654)
+++.+ | +...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...+..+.+.. |+
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 281 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PG 281 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 55432 1 2334445555555555555555555555543211112233444444444455555544444444432 22
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHH---cCChhHHHHHHHHHhhcCCCCCH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAM---HGRADDAIELFFKMQREKMRPDR 397 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~ 397 (654)
...+..++..|.+.|++++|..+|+++.+ |+..+++.++..+.. .|+.++++.++++|.+.+++|+.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 23334444444444444444444444332 333444444443332 23444444444444444433333
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.4e-18 Score=179.85 Aligned_cols=257 Identities=15% Similarity=0.104 Sum_probs=176.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 006246 232 SYNAMISGFARFGRFEEARKLFNEMNDKD-------EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304 (654)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (654)
++..+...+...|++++|..+++.+.... ...+..+...|.+.|++++|+.+|+++.+.. +++..++..+..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 34444444444444444444444443210 1234555555566666666666666655432 233445555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC
Q 006246 305 ACASLGALDQGIWIHDHVKRNSICVD----AVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGR 377 (654)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 377 (654)
.+.+.|++++|.+.+..+.+.+..+. ...+..+...+.+.|++++|.+.|+++.+ .+...+..+...|.+.|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 56666666666666665555432221 12345677788888999999999988764 245678888899999999
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (654)
+++|+++|+++.+.+......++..+..++...|++++|.+.++.+.+. .|+...+..++..+.+.|++++|.++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999987643323456788899999999999999999999874 5777778899999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHH---hCChHHHHHHHHHHH
Q 006246 458 SM-PMEPNAAVWEALLGACRK---HGEVEFGERLGKILL 492 (654)
Q Consensus 458 ~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~ 492 (654)
++ ...|+...+..++..+.. +|+.+++...+++++
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 76 567899999988887765 456766666665554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.5e-17 Score=180.34 Aligned_cols=264 Identities=13% Similarity=0.085 Sum_probs=211.2
Q ss_pred cCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChhHH
Q 006246 243 FGRFEEARKLFNEMNDK------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR-KFVLSCVLAACASLGALDQG 315 (654)
Q Consensus 243 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 315 (654)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46899999999987642 3557888889999999999999999999876 444 45777888888999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC
Q 006246 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 392 (654)
...++.+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|++.++..
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999998875 45678888999999999999999999998875 356788889999999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCc-ch-------HHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 006246 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV-EH-------YGCIVDLLGRAGYLAEAEEVISSM-PMEP 463 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~-~~-------~~~li~~~~~~g~~~~A~~~~~~m-~~~p 463 (654)
+.+...+..+...+...|++++|+..|+...+. .|+. .. ++.....+...|++++|.+++++. ...|
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 335678888899999999999999999998763 3331 11 112222344579999999999986 4555
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHHh
Q 006246 464 N-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR------RCDDVAKMRKLMKE 513 (654)
Q Consensus 464 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~a~~~~~~m~~ 513 (654)
+ ...+..+...+...|++++|...+++++++.+... .|.++.++....++
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQE 596 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 56789999999999999999999999999887643 45555555444443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.7e-16 Score=176.44 Aligned_cols=397 Identities=9% Similarity=0.003 Sum_probs=243.1
Q ss_pred HHHHhcccccCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHhc
Q 006246 70 TLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN-KFTYPTVFKACSI 145 (654)
Q Consensus 70 ~Li~~y~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 145 (654)
-.+..... .|+.++|+++|+.... .+...+..+...+.+.|++++|+++|++..+. .|+ ...+..+..++..
T Consensus 20 d~~~ia~~--~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 20 DWLQIALW--AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33444444 5666666666666542 22233566666666666666666666666553 232 3334444445556
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006246 146 TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELF 222 (654)
Q Consensus 146 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (654)
.|+.++|...++.+++.. +.+.. +..+..++...|+.++|...+++. .+.+...+..+...+...|..++|+..+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 666666666666666542 23333 555555555555555555555543 2223333444444444455555555544
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH-----HhcCCh---HHHHHHHHHHHhC-CCC
Q 006246 223 KSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY-----TKDGYY---KEALEVFNEMQRD-KIK 293 (654)
Q Consensus 223 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~ 293 (654)
+.... ++.....+ .......++... ...+++ ++|++.++.+.+. ...
T Consensus 174 ~~~~~-~p~~~~~l-----------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 174 DDANL-TPAEKRDL-----------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HhCCC-CHHHHHHH-----------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 44433 11100000 000111111111 112233 6777777777754 223
Q ss_pred CCcc-hHHH----HHHHHHhcCChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCC------
Q 006246 294 PRKF-VLSC----VLAACASLGALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE------ 361 (654)
Q Consensus 294 p~~~-t~~~----ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------ 361 (654)
|+.. .+.. .+.++...|+.++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++...+
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 3221 1111 133445668888888888888776532 22 122235678888888888888888875422
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 006246 362 -VFTWNAMIGGLAMHGRADDAIELFFKMQREKM-----------RPDR---ITFACVLSACAHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 426 (654)
...+..+..++...|++++|+++++++.+... .|+. ..+..+...+...|+.++|++.++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23455666678888999999999988876521 2332 24456677888999999999999999874
Q ss_pred cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 427 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 3445678889999999999999999999987 45565 67777888899999999999999999999999997
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=9.7e-17 Score=176.25 Aligned_cols=339 Identities=9% Similarity=-0.004 Sum_probs=170.6
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHH
Q 006246 135 TYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLK 211 (654)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 211 (654)
-...++..+.+.|+.+.|..++...+.... .+......++......|+++.|.+.|++. .+.+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 444555666777777777777777776542 23334444444555566666666666654 23344455555555555
Q ss_pred cCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006246 212 CGDIEGAKELFKSTKD--K-NTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQ 288 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (654)
.|++++|+..|++..+ | +...+..+...+...|++++|...+ +.+.
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~-------------------------------~~~~ 171 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA-------------------------------RTQA 171 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH-------------------------------HHHH
Confidence 5555555555555443 1 2334444444455555555555544 4443
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHH
Q 006246 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTW 365 (654)
Q Consensus 289 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~ 365 (654)
... |+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|.+.|++... .+...+
T Consensus 172 ~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 172 QEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred HhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 321 111111111122344444444444444444332222222223334444455555555555554433 134445
Q ss_pred HHHHHHHHHcCChhH----HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHH
Q 006246 366 NAMIGGLAMHGRADD----AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIV 440 (654)
Q Consensus 366 ~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li 440 (654)
..+...|...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++...+. .|+ ...+..+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 555555555555553 566666655532 113345555555666666666666666665542 232 33444555
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--CchHHHHHHHHH
Q 006246 441 DLLGRAGYLAEAEEVISSM-PMEPNAAV-WEALLGACRKHGEVEFGERLGKILLEMEPQNR--RCDDVAKMRKLM 511 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~a~~~~~~m 511 (654)
.+|.+.|++++|++.++++ ...|+... +..+..++...|+.++|...++++++..|++. .|+++...+...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHH
Confidence 6666666666666666655 23344322 22334556666666666666666666666654 555554444433
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.7e-16 Score=173.28 Aligned_cols=403 Identities=13% Similarity=0.033 Sum_probs=277.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 006246 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180 (654)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 180 (654)
+......+.+.|++++|+..|++.... .|+...|..+..++...|++++|...+..+++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445666788889999999999998764 5777788888888888999999999999988864 3456678888889999
Q ss_pred cCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006246 181 FGCVNKARQILDDGS---KSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMN 257 (654)
Q Consensus 181 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (654)
.|++++|...|.... ..+......++..+........+...++.- .++...+..+.. |......+.+..-++...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999988776532 111111122222222211122233333221 122233333322 222211111211122211
Q ss_pred CCCH---hHHHHHHHHH---HhcCChHHHHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006246 258 DKDE---ITWSAIIDGY---TKDGYYKEALEVFNEMQRDK-IKP-RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV 329 (654)
Q Consensus 258 ~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (654)
+.+. ..+..+...+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 1111111111 23478999999999998865 234 33466777777889999999999999998864 33
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
+...+..+...|...|++++|...|+++.. .+...|..+...+...|++++|+..|++.++.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 466788889999999999999999998765 367899999999999999999999999998863 2345677788889
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------H-HHHHHHHHHHHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-------A-AVWEALLGACRK 477 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~~~ll~~~~~ 477 (654)
+.+.|++++|...|+...+. .+.+...|..+..++...|++++|++.|++. ...|+ . ..++..+..+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999873 3344678899999999999999999999986 33332 1 112222333445
Q ss_pred hCChHHHHHHHHHHHhcCCCCC--------------CchHHHHHHHHHH
Q 006246 478 HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMK 512 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~ 512 (654)
.|++++|..+++++++++|++. ++++|.+.++...
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6999999999999999999885 5666666655543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=7.7e-16 Score=169.19 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=217.4
Q ss_pred CCChHHHHHHHhcCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006246 80 FSNFELALKVFNSVHK------PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 153 (654)
..+|+.---.|...++ -+..-...++..+.+.|++++|+.+++........ +...+..+..+....|+.+.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHH
Confidence 6778877777777663 12333455677888999999999999999886433 3334555556677899999999
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--C
Q 006246 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--K 228 (654)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 228 (654)
+.++.+++.. +.+...+..+...+...|++++|...+++. .+.+...|..+...+...|++++|...++.+.. |
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999875 456678888999999999999999999985 455778899999999999999999999987643 3
Q ss_pred Ccc-hHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHH
Q 006246 229 NTG-SYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVL 303 (654)
Q Consensus 229 ~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (654)
+.. .+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++.... +.+...+..+.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLG 253 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 322 23222 3366677777777777765442 22233444556666777777777777766543 22334444455
Q ss_pred HHHHhcCChhH----HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC
Q 006246 304 AACASLGALDQ----GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHG 376 (654)
Q Consensus 304 ~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 376 (654)
..+...|++++ |...++.+.+.. +.+..++..+...+.+.|++++|...+++... .+...+..+...|.+.|
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 55556666553 555555555543 22445555555555555555555555555443 13344555555555555
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRIT-FACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
++++|+..|+++... .|+... +..+..++...|+.++|...|+...+
T Consensus 333 ~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 333 QYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555543 233222 22233445555555555555555544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=9.7e-15 Score=160.85 Aligned_cols=413 Identities=11% Similarity=0.028 Sum_probs=301.6
Q ss_pred CCChHHHHHHHhcCCC--CCc-chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHH---HHHHhccCCcHHHH
Q 006246 80 FSNFELALKVFNSVHK--PNV-FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV---FKACSITEADKEGV 153 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~ 153 (654)
.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++++|.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888888774 332 123377778888888889988888876 3433333333 33566778888999
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHhcCC--C-
Q 006246 154 QVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLK--CGDIEGAKELFKSTKD--K- 228 (654)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--~- 228 (654)
++++.+++.. +.+..++..++..|...++.++|++.+++..+.++.....+..+|.. .++..+|+..++++.+ |
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 9999888875 34466677788888888999999999988765554433334445444 5556568999988876 3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhHHHH----HHHHHH---------hcCC---hHHHHHHHHHHHhC-
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMNDK-DEITWSA----IIDGYT---------KDGY---YKEALEVFNEMQRD- 290 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~---------~~g~---~~~A~~~~~~m~~~- 290 (654)
+...+..+...+.+.|-...|.++..+-++- +...+.. .+.-.+ ...+ .+.|+.-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 4566788888889999998998888776531 1111000 011111 1122 34566666665542
Q ss_pred CCCCCc-chH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----
Q 006246 291 KIKPRK-FVL----SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK----- 360 (654)
Q Consensus 291 g~~p~~-~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----- 360 (654)
+-.|.. .-| .-.+-++...++..++++.++.+...+.+....+-.++.++|...+.+++|..+|+++...
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 222332 222 2345677889999999999999999887666778889999999999999999999987542
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC-------------CCCHHH-HHHHHHHHHccCCHHHHHHHHHH
Q 006246 361 ----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKM-------------RPDRIT-FACVLSACAHAGMIDRGLQALTY 422 (654)
Q Consensus 361 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~ 422 (654)
+......|..+|...+++++|..+++++.+.-. .||-.. +..++..+...|++.+|.+.++.
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233357789999999999999999999987311 223333 34456678899999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 423 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+... -+-|......+.+++...|++.+|++.++.. ...| +..+....+.+....|++++|..+.+.+++..|++.
T Consensus 442 l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 442 LSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9873 4556788899999999999999999999876 3456 466777888899999999999999999999999998
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.3e-14 Score=163.02 Aligned_cols=451 Identities=8% Similarity=-0.068 Sum_probs=323.2
Q ss_pred hhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccC-CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCch
Q 006246 37 ILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRF-SNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPW 115 (654)
Q Consensus 37 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 115 (654)
.+.+...++++.+..++..+.+.+.. +......|-.+|.. . ++ +.|..+++...+.|...+..+...|.+.|+.+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q--~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLA--GQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH--hhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHH
Confidence 35777899999999999999998744 34456666667776 3 55 88888887655678888999999999999999
Q ss_pred HHHHHHHHhHhCCCC-CCcccHHHHHH------------------------------HHhccCCcHHHHHH---------
Q 006246 116 RVISLYSEMVGVDSK-PNKFTYPTVFK------------------------------ACSITEADKEGVQV--------- 155 (654)
Q Consensus 116 ~A~~~~~~m~~~g~~-p~~~t~~~ll~------------------------------~~~~~~~~~~a~~~--------- 155 (654)
+|.+.++++...-.. |+..++..++. .+.+.++++.+.++
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 999999998653222 33333332221 12222333322222
Q ss_pred --------------------HHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----ChhhHHHHHHHH
Q 006246 156 --------------------HAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK--S----DVICWNALIDGY 209 (654)
Q Consensus 156 --------------------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~ 209 (654)
+..+.+.. +.+.....-+.-...+.|+.++|.++|+.... + +...-+-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 11222110 12333333334445667889999999987633 2 233444677777
Q ss_pred HHcCC---HHHHHHHHH-------------------------hcCC---C--CcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 006246 210 LKCGD---IEGAKELFK-------------------------STKD---K--NTGSYNAMISGFARFGRFEEARKLFNEM 256 (654)
Q Consensus 210 ~~~g~---~~~A~~~~~-------------------------~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (654)
.+.+. ..++..+-. .... + +...|..+..++.. ++.++|...|.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 77766 334433311 1111 2 45567778877777 8898999987776
Q ss_pred CCCCHhHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 006246 257 NDKDEITWSAII--DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG 334 (654)
Q Consensus 257 ~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 334 (654)
....+..++.+. ..+.+.|++++|...|+++... +|+...+..+..++.+.|++++|...+..+.+.. +.+...+
T Consensus 503 l~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 503 EQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred HHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 643333444444 4446899999999999998654 4555556677778899999999999999998875 3333444
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 335 TALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
..+.....+.|++++|...|++... |+...|..+...+.+.|+.++|+..|++..+.. +.+...+..+..++...|+
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 4444455566999999999998875 677889999999999999999999999999863 2245577777789999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHH
Q 006246 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKI 490 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 490 (654)
.++|+..++...+. -+-+...+..+..++...|++++|+..+++. ...|+ ..+.........+..+++.+.+.+++
T Consensus 659 ~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 659 IAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999873 2334678889999999999999999999988 56665 46666777888888999999999999
Q ss_pred HHhcCCCCC
Q 006246 491 LLEMEPQNR 499 (654)
Q Consensus 491 ~~~~~p~~~ 499 (654)
...++|+..
T Consensus 737 ~~~~~~~~~ 745 (987)
T PRK09782 737 RWTFSFDSS 745 (987)
T ss_pred HhhcCccch
Confidence 999988864
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=4.6e-15 Score=166.62 Aligned_cols=393 Identities=8% Similarity=-0.039 Sum_probs=235.4
Q ss_pred hhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCc
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEP 114 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 114 (654)
......|+.+.|.+++....... +.+...+..+..++.+ .|++++|..+|+... ..+...+..+...+...|++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRN--LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 45667899999999999887633 3345568888899999 999999999999954 34566788888899999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 006246 115 WRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 115 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 194 (654)
++|+..+++..+. .|+...+..+..++...|+.++|...++++++.. +.+..++..+...+...|..+.|.+.++..
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999999886 3433337777778889999999999999999975 445666777888898999999999999887
Q ss_pred CCCChhh--------HHHHHHHHH-----HcCCH---HHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 006246 195 SKSDVIC--------WNALIDGYL-----KCGDI---EGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 195 ~~~~~~~--------~~~li~~~~-----~~g~~---~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
.. ++.. ...++..+. ..+++ ++|+..++.+.+ .++......
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~------------------- 236 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY------------------- 236 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH-------------------
Confidence 65 3221 111111111 11112 344444444431 111000000
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---ch
Q 006246 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIK-PRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICV---DA 331 (654)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 331 (654)
.......+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|+..++.+.+..... ..
T Consensus 237 -----~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 237 -----QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred -----HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 000001122233445555555555555444311 111 11112334455555555555555544322110 01
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCCCC------------------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCC
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKE------------------VFTWNAMIGGLAMHGRADDAIELFFKMQREKM 393 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 393 (654)
.....|..++.+.|++++|.++++.+...+ ...+..+...+...|+.++|+++++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 223334444555555555555555544311 1233445556666777777777777776642
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 006246 394 RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAA 466 (654)
Q Consensus 394 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 466 (654)
+-+...+..+...+...|++++|++.+++..+. .|+ ...+..++..+.+.|++++|+++++++ ...|+..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 224455666666666777777777777766652 344 445555556666777777777777766 3344433
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.2e-15 Score=155.21 Aligned_cols=461 Identities=13% Similarity=0.087 Sum_probs=319.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhCCCchHH
Q 006246 44 TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN------VFVWNSVLRACLEHNEPWRV 117 (654)
Q Consensus 44 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A 117 (654)
.++..|.+++....+.. ..+|.+.+.|.+.|.. .|+++.+..+.+.+...+ ..+|--+.++|-..|++++|
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyf--K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYF--KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhh--cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 34556666666655544 3467778888887777 788888887777665322 23466677778888888888
Q ss_pred HHHHHHhHhCCCCCCcccHH--HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 006246 118 ISLYSEMVGVDSKPNKFTYP--TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFG----CVNKARQIL 191 (654)
Q Consensus 118 ~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~ 191 (654)
...|-+..+. .||.++++ -+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++
T Consensus 327 ~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 327 FKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 8888766654 45554443 34556777888888888888877753 444556666666666654 556666666
Q ss_pred hcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhc--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 006246 192 DDGS---KSDVICWNALIDGYLKCGDIEGAKELFKST--------KDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK- 259 (654)
Q Consensus 192 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 259 (654)
.+.. +.|...|-.+...|-+..-+.. +..|... ....+...|.+...+...|+++.|...|......
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 6653 3355666666666555443322 4444332 2356667788888888888888888888876532
Q ss_pred ------CH------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006246 260 ------DE------ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF-VLSCVLAACASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 260 ------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (654)
|. .+-..+...+-..++.+.|.+.|....+. .|.-. .|..++......+...+|...+..+....
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 22 12333555666777888888888888775 34332 23233322233466777888877777654
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHH------------cCChhHHHHHHHHHh
Q 006246 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAM------------HGRADDAIELFFKMQ 389 (654)
Q Consensus 327 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~ 389 (654)
..++.+++-+.+.|.+..++..|.+-|+.+.+ +|..+.-+|...|.+ .+..++|+++|.+.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 44666777777788888888888886665543 255555555554432 245788999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 006246 390 REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM----PMEPNA 465 (654)
Q Consensus 390 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~ 465 (654)
+.. +-|...-+.+.-.++..|++.+|..+|.++++. ......+|-.+..+|..+|++..|+++|+.. .-..+.
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 864 336777788888899999999999999999985 3345667889999999999999999999876 223478
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC---------------------------------CchHHHHHHHHHH
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---------------------------------RCDDVAKMRKLMK 512 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------------------------------~~~~a~~~~~~m~ 512 (654)
.+...|..++...|.+.+|.+.+..+..+.|.++ ..+.+.++|..|.
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999997 5567777888877
Q ss_pred hcCCc
Q 006246 513 ERGIK 517 (654)
Q Consensus 513 ~~g~~ 517 (654)
+.+-+
T Consensus 797 ~~~d~ 801 (1018)
T KOG2002|consen 797 KNGDK 801 (1018)
T ss_pred hcCCC
Confidence 66543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3.4e-13 Score=148.73 Aligned_cols=439 Identities=9% Similarity=0.007 Sum_probs=319.0
Q ss_pred HHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHH---HHH
Q 006246 31 QKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSV---LRA 107 (654)
Q Consensus 31 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~ 107 (654)
|...+ ...+.|++..|...+.++++..+...+.++ .++..+.. .|+.++|+..+++...|+...+..+ ...
T Consensus 38 y~~ai---i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~--~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLI---IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGW--AGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HHHHH---HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHH--cCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 44444 466889999999999999987644334455 88888888 9999999999999987755444443 346
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHH
Q 006246 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKA 187 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 187 (654)
|...|++++|+++|+++.+.. +-+...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 778899999999999999863 224456666777788999999999999999876 45555555555556556777679
Q ss_pred HHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC-Ccch--------HHHHHHHH-----HhcCC---HH
Q 006246 188 RQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK-NTGS--------YNAMISGF-----ARFGR---FE 247 (654)
Q Consensus 188 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~li~~~-----~~~g~---~~ 247 (654)
.+.++++ .+.+...+..+...+.+.|-...|+++..+-..- +... ...+++.- ....+ .+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999987 4446777888999999999999999998875531 0000 11111110 01122 34
Q ss_pred HHHHHHHhcCC-----CCH-h----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHH
Q 006246 248 EARKLFNEMND-----KDE-I----TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317 (654)
Q Consensus 248 ~A~~~~~~~~~-----~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (654)
.|+.-++.+.. |.. . ..--.+-++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 45554555443 211 1 2223456788899999999999999998876566788899999999999999999
Q ss_pred HHHHHHHcC-----CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH------------------HHHHHHHHHHHH
Q 006246 318 IHDHVKRNS-----ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV------------------FTWNAMIGGLAM 374 (654)
Q Consensus 318 ~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------------------~~~~~li~~~~~ 374 (654)
++..+.... .+++......|.-+|...+++++|..+++++.+..+ .....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999997753 233444467899999999999999999998875111 234456777889
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHH
Q 006246 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 453 (654)
.|+..+|++.++++.... +-|.-....+...+...|.+.+|.+.++.... +.|+ .......+..+...|++++|.
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999998864 44777888899999999999999999976654 3555 556677888888999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHhCChH
Q 006246 454 EVISSM-PMEPNAAVWEALLGACRKHGEVE 482 (654)
Q Consensus 454 ~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 482 (654)
.+.+.. ...|+......|-.....|...+
T Consensus 505 ~~~~~l~~~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 505 LLTDDVISRSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHhhCCCchhHHHHHHHHHHhhhHH
Confidence 988766 23344333333333333444333
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.6e-13 Score=139.78 Aligned_cols=458 Identities=12% Similarity=0.071 Sum_probs=332.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC------CCCcchHHHHHHHHHhCCCchHHH
Q 006246 45 SWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH------KPNVFVWNSVLRACLEHNEPWRVI 118 (654)
Q Consensus 45 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~ 118 (654)
+++.|.+.|..+++..+..-++.....--.|.+ +++..|+.+|.... .+|+.. .+..++.+.|+.+.|+
T Consensus 145 ~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk---kdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPDNILALLGKARIAYNK---KDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 368899999999988654444555444445554 89999999998854 244421 2234567889999999
Q ss_pred HHHHHhHhCCCCCCcc-cHHHHHHH---HhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 006246 119 SLYSEMVGVDSKPNKF-TYPTVFKA---CSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 119 ~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 194 (654)
..|.+..+. .|+.+ ++..|--. +-.......|.+++...-... ..++.+.+.|.+.|.-.|++..+..+...+
T Consensus 220 ~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 220 LAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999885 34322 22211111 122334566777777666654 567889999999999999999999988776
Q ss_pred CCCC------hhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--C--cchHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CH
Q 006246 195 SKSD------VICWNALIDGYLKCGDIEGAKELFKSTKDK--N--TGSYNAMISGFARFGRFEEARKLFNEMND--K-DE 261 (654)
Q Consensus 195 ~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~ 261 (654)
...+ ..+|-.+.++|-..|++++|...|.+..+. | +..+--|..+|.+.|+++.|...|+.+.. | +.
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 3332 346888999999999999999999888763 3 33456789999999999999999999875 3 45
Q ss_pred hHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCchhH
Q 006246 262 ITWSAIIDGYTKDG----YYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK----RNSICVDAVL 333 (654)
Q Consensus 262 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 333 (654)
.+...+...|...+ ..++|..++.+..+.- +.|...|..+...+.. ++.......+..+. ..+-.+.+.+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 66777777777775 4466666666665542 3355566555555544 44444466666554 3555678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC-------CH------HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-H
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMK-------EV------FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-T 399 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 399 (654)
.|.+...+...|.+++|...|...... |. .+--.+...+-..++.+.|.+.|..+.+. .|..+ .
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999876542 22 12333555666778999999999999986 45554 4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM----PMEPNAAVWEALLGAC 475 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 475 (654)
|.-++...-..+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|+.. ...+|+.+.-+|++.|
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 54444333345788899999999887 55666777888888998888888888844443 3457888888888876
Q ss_pred HH------------hCChHHHHHHHHHHHhcCCCCC--------------CchHHHHHHHHHHhcCC
Q 006246 476 RK------------HGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGI 516 (654)
Q Consensus 476 ~~------------~g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~~g~ 516 (654)
.. .+..++|+++|.+++..+|.|. +|.+|..+|...++...
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 53 3467899999999999999986 99999999999998765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.8e-12 Score=122.54 Aligned_cols=408 Identities=12% Similarity=0.102 Sum_probs=283.7
Q ss_pred hHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCCh-------------------------H
Q 006246 30 SQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNF-------------------------E 84 (654)
Q Consensus 30 t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~-------------------------~ 84 (654)
|=+.|+ ...+.|.+..+--++..|...|.+.++.+--.|+..-+-....++ +
T Consensus 118 ~E~nL~---kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLL---KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHH---HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344554 345678899999999999999988777776665543221001111 2
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 006246 85 LALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGL 164 (654)
Q Consensus 85 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 164 (654)
-|.-+|+ ...++..+|..||.++++-...+.|.+++++-.....+.+..+||.+|.+.+-. .++++..+|+...+
T Consensus 195 vAdL~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 2333333 334566789999999999999999999999999887889999999999886543 34899999999999
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhc--------CCCCChhhHHHHHHHHHHcCCHHH-HHHHHHhcCC--------
Q 006246 165 CGDVHVKSSGIQMYACFGCVNKARQILDD--------GSKSDVICWNALIDGYLKCGDIEG-AKELFKSTKD-------- 227 (654)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~-------- 227 (654)
.||..++|+++.+..+.|+++.|++.+-+ +.+|...+|.-+|..+.+.++..+ |..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999999999988765543 388999999999999999888754 4455554432
Q ss_pred ----CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006246 228 ----KNTGSYNAMISGFARFGRFEEARKLFNEMNDK-----------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKI 292 (654)
Q Consensus 228 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (654)
.|..-|..-+..|....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 24455677778888999999888876655432 233567778888999999999999999998888
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 006246 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGL 372 (654)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 372 (654)
-|+..+...++.+....+.++...+++..++..|...+.....-++..+++.. ..++...-..+-...
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAF 497 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHH
Confidence 89999999999999999999999999999988774433333322222222221 011111111111111
Q ss_pred HHc-CChhHH-HHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH---HHHHHHcC
Q 006246 373 AMH-GRADDA-IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI---VDLLGRAG 447 (654)
Q Consensus 373 ~~~-g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l---i~~~~~~g 447 (654)
++. -++.++ ..--.+|.+.... ....+.++-.+.+.|..++|.++|..+.+.+.-.|.....++| ++.-.+..
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 110 011111 2223344444333 3445556666778888888888888886655555666666644 44555677
Q ss_pred CHHHHHHHHHhC
Q 006246 448 YLAEAEEVISSM 459 (654)
Q Consensus 448 ~~~~A~~~~~~m 459 (654)
....|..+++-|
T Consensus 576 spsqA~~~lQ~a 587 (625)
T KOG4422|consen 576 SPSQAIEVLQLA 587 (625)
T ss_pred CHHHHHHHHHHH
Confidence 888888888776
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=8.6e-13 Score=127.55 Aligned_cols=425 Identities=14% Similarity=0.106 Sum_probs=289.1
Q ss_pred hHHHHHHHhcccccCCChHHHHHHHhcCCC----CCcchH-HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 006246 66 YVSGTLVKCHANSRFSNFELALKVFNSVHK----PNVFVW-NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF 140 (654)
Q Consensus 66 ~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 140 (654)
.+...|..-|.. .....+|+..|+-+.+ ||.-.. -.+...+.+...+.+|+++|+-.+..-...+..+-..++
T Consensus 202 svl~nlaqqy~~--ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEA--NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhh--hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 344556666766 6778889988887664 332111 113345677788999999998776542112222332333
Q ss_pred H----HHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC----------------CCChh
Q 006246 141 K----ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS----------------KSDVI 200 (654)
Q Consensus 141 ~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------------~~~~~ 200 (654)
+ .+.+.|.++.|..-|++..+. .|+..+...|+-++..-|+.++.++.|.++. .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3 367889999999999998875 5888887788888889999999999998751 12222
Q ss_pred hHHHHH-----HHHHHcC--CHHHHHHHHHhcCC----CCcch-------------H--------HHHHHHHHhcCCHHH
Q 006246 201 CWNALI-----DGYLKCG--DIEGAKELFKSTKD----KNTGS-------------Y--------NAMISGFARFGRFEE 248 (654)
Q Consensus 201 ~~~~li-----~~~~~~g--~~~~A~~~~~~m~~----~~~~~-------------~--------~~li~~~~~~g~~~~ 248 (654)
..|.-| .-.-+.. +.++++-.--.+.. |+-.. + -.-..-|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222222 2222221 22222222222222 22110 1 111234688999999
Q ss_pred HHHHHHhcCCCCHhHH----HHHHHH-HHh-cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 249 ARKLFNEMNDKDEITW----SAIIDG-YTK-DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 249 A~~~~~~~~~~~~~~~----~~li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
|.+++.-..++|..+- |.|-.. |.+ -.++..|-++-+..+... +-+....+.-.+.....|++++|.+.|.++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888877654332 222222 223 335667776666655432 222222222223344678999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 399 (654)
+...-......|| +.-.+-+.|++++|++.|-++.. .++...-.+...|-...+..+|++++-+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8765444444444 34457789999999999987754 57777778888999999999999999777654 4557778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HH
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGAC-RK 477 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~ 477 (654)
...|...|-+.|+-.+|.+.+-.--. -++-+.++..-|..-|....-+++|+..|++. -++|+.+-|..++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 88899999999999999988765543 34556788888888889999999999999998 4789999999998877 57
Q ss_pred hCChHHHHHHHHHHHhcCCCCC
Q 006246 478 HGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|++.+|..+|+..-...|++.
T Consensus 673 sgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred cccHHHHHHHHHHHHHhCccch
Confidence 8999999999999999999986
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=1.3e-10 Score=117.80 Aligned_cols=417 Identities=11% Similarity=0.063 Sum_probs=329.2
Q ss_pred HhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHHHHHHH----hHhCCCCCCcccHHHHHHHHhc
Q 006246 73 KCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVISLYSE----MVGVDSKPNKFTYPTVFKACSI 145 (654)
Q Consensus 73 ~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 145 (654)
-+|++ ...++.|.+++++.. ..+...|-+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-.
T Consensus 414 lAlar--LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALAR--LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34445 566777777776654 34666676655555677887777777654 3446777788788777777888
Q ss_pred cCCcHHHHHHHHHHHHhCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHH
Q 006246 146 TEADKEGVQVHAHVVKNGLCG--DVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKE 220 (654)
Q Consensus 146 ~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 220 (654)
.|..-.+..+....+..|++. ...+|+.-.+.+.+.+.++-|+.+|... .+.+...|...+..--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888888877653 3457888888888999999999888764 45567778887777777888898888
Q ss_pred HHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006246 221 LFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294 (654)
Q Consensus 221 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (654)
+|++... .....|......+-..|++..|..++...-+. +...|-+-+..-..+..++.|..+|.+.... .|
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 8888875 34556777777888889999999998887642 5667888899999999999999999988764 57
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CHHHHHHHHHH
Q 006246 295 RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EVFTWNAMIGG 371 (654)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 371 (654)
+...|.--+..---+++.++|++++++.++. ++.-...|-.+...+-..++++.|.+.|..-.+ | .+..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777777677777788999999999888876 344567788888899999999999999987665 3 45678888888
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
=-+.|+.-.|..+|++..-.+.+ |...|...+..-.+.|+.++|..+..+..+ .++.+...|..-|.+..+-++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchH
Confidence 88889999999999999877533 777899999999999999999999999887 456667788888888888888777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 452 AEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 452 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+.+.+++.. .|+.+.-++...+.....++.|...|+++++++|++.
T Consensus 806 s~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 806 SIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 777777654 4666777778888888889999999999999999887
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.7e-11 Score=115.83 Aligned_cols=311 Identities=15% Similarity=0.167 Sum_probs=182.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH--HhccCCcHHHH-HHHHHHHHhCCCCChhhHHHH
Q 006246 98 VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA--CSITEADKEGV-QVHAHVVKNGLCGDVHVKSSG 174 (654)
Q Consensus 98 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l 174 (654)
+++=|.|+.. ..+|....+.-+|+.|.+.|+..+...-..|++. |-...++.-++ +.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 4566777654 4567888899999999998877776655555544 22333333222 22333433332 111222
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCHHHHH
Q 006246 175 IQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK----NTGSYNAMISGFARFGRFEEAR 250 (654)
Q Consensus 175 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~ 250 (654)
+.|++.+ ++-+..++...++..||.++++--..+.|.++|++.... +..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 2333322 444555666677777777777777777777777766542 45566666655433333 3
Q ss_pred HHHHhcC----CCCHhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhH-HHHHHHH
Q 006246 251 KLFNEMN----DKDEITWSAIIDGYTKDGYYKE----ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ-GIWIHDH 321 (654)
Q Consensus 251 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~ 321 (654)
++..+|. .||..++|+++++..+.|+++. |++++.+|++-|+.|...+|..++..+++.++..+ +..+...
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 3333333 4677777777777777776653 45566677777777777777777777666665533 2333333
Q ss_pred HHH----cCCC----CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHcCChhHHH
Q 006246 322 VKR----NSIC----VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----------EVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 322 ~~~----~~~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~ 382 (654)
+.. ..+. .|...+..-++.+....+.+-|.++-.-.... ..+-|..+....++....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1222 23445555566666666666666665443321 1123445556666666677777
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.+|+.|.-.-+-|+..+...++.+..-.|.++-..+++..++.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 7777776666667777777777777767766666666666555
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.6e-10 Score=117.22 Aligned_cols=453 Identities=15% Similarity=0.137 Sum_probs=361.2
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC--------CCCcchHHHHHHHHHh
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH--------KPNVFVWNSVLRACLE 110 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~ 110 (654)
+++++..++.|+.++....+. ++.++.+|.+-...=-. .|+.+...++.++.. .-|...|-.=...+-.
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~--ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEA--NGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 566667788888888776654 45577777665555555 899998888887653 2355567777777888
Q ss_pred CCCchHHHHHHHHhHhCCCCCC--cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006246 111 HNEPWRVISLYSEMVGVDSKPN--KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKAR 188 (654)
Q Consensus 111 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 188 (654)
.|..--+..+......-|+.-. ..||..-...|.+.+.++-++.+|...++. ++.+..+|...+.+--..|..+.-.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888877776542 348888888999999999999999999986 3567778888888777889999999
Q ss_pred HHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 006246 189 QILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND--KD 260 (654)
Q Consensus 189 ~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 260 (654)
.+|++. .+...+.|-.....+-..|+...|..++.+..+ .+...|-+-+..-....+++.|..+|.+... +.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 999886 456777888888889999999999999998876 3456788889999999999999999998775 45
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK-FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
...|.--+..---.++.++|++++++.++. -|+- ..|..+.+.+.+.++++.|.+.|..=.+. ++..+-.|-.|..
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 667777777777789999999999998875 4554 35666677788889999998888765543 3445678888888
Q ss_pred HHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 416 (654)
.=-+.|.+-.|+.+|++..-+ |...|-..|..-.+.|+.+.|..+..+.++. ++.+...|.--|....+.++-...
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 889999999999999987753 7789999999999999999999999998886 455667777777777777765554
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 417 ~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
...+.+ ..-|....-.+..++....+++.|.+.|++. +..| +..+|..+...+.+||.-+.-.+++.+....
T Consensus 807 ~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 807 IDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 444433 4556777778888999999999999999987 4555 4789999999999999999999999999999
Q ss_pred CCCCC-CchHHH
Q 006246 495 EPQNR-RCDDVA 505 (654)
Q Consensus 495 ~p~~~-~~~~a~ 505 (654)
+|.+. .|..+.
T Consensus 881 EP~hG~~W~avS 892 (913)
T KOG0495|consen 881 EPTHGELWQAVS 892 (913)
T ss_pred CCCCCcHHHHHh
Confidence 99886 554443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.9e-12 Score=123.12 Aligned_cols=453 Identities=12% Similarity=0.118 Sum_probs=306.3
Q ss_pred chHHHHHhhh-hhcCCCChHHHHHHHHHHHHhCCCCchh-HHHHHHHhcccccCCChHHHHHHHhcC----CCCC----c
Q 006246 29 FSQKTILDIL-NTKCHTSWQHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSV----HKPN----V 98 (654)
Q Consensus 29 ~t~~~ll~~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~~~g~~~~A~~~f~~~----~~~~----~ 98 (654)
.||+.|.++. .+.......+|..-+.-+.+...-|+.- .--.+-+.|.+ ..++..|++.|+-. |.-+ +
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~k--kr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFK--KREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeee--hhhHHHHHHHHHHHHhhccccchhhHH
Confidence 4677776522 2333445677888888888776666543 23344567778 88999999988543 3222 2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-----------
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD----------- 167 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----------- 167 (654)
...|.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++.++.|..|+.....+|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 23444445678999999999999998875 57876655555556677999999999999987533322
Q ss_pred -hhhHHHH-----HHHHHhcC--CHHHHHH----HHhcCCCCChh---hHH----------H--------HHHHHHHcCC
Q 006246 168 -VHVKSSG-----IQMYACFG--CVNKARQ----ILDDGSKSDVI---CWN----------A--------LIDGYLKCGD 214 (654)
Q Consensus 168 -~~~~~~l-----i~~y~~~g--~~~~A~~----~~~~~~~~~~~---~~~----------~--------li~~~~~~g~ 214 (654)
....+.- +.-.-+.+ +.++++- +..-...||-. -|- . -..-|.++|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 2222221 11121211 1222221 11112222211 011 0 1124789999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH----HHh--cCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHH
Q 006246 215 IEGAKELFKSTKDKNTGSYNAMISG----FAR--FGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFN 285 (654)
Q Consensus 215 ~~~A~~~~~~m~~~~~~~~~~li~~----~~~--~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (654)
++.|+++++-..+.|..+-.+-.+- +.- -.++.+|...-+..... |....+.-...-..+|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999999988776654433322 222 34577777766655543 23222222333456899999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCH
Q 006246 286 EMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEV 362 (654)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~ 362 (654)
+.+...-.-....|+ +.-.+..+|++++|++.|-.+...- ..++.+.-.+.+.|....+...|.+++-+... .|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH
Confidence 998654222222222 2234577899999999887765431 23567777888999999999999999987765 488
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
....-|...|-+.|+-.+|.+.+-+--.- ++-|..|...|..-|....-+++++++|++.. -+.|+..-|..||..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmias 668 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHH
Confidence 89999999999999999999887665443 45677888888888899999999999999885 479999999998865
Q ss_pred H-HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 443 L-GRAGYLAEAEEVISSM--PMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 443 ~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
| .|.|++.+|.++++.. +++-|......|+..|...|. ..+.++.+++-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 4 5789999999999987 566688889999999888884 45666666553
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-09 Score=105.69 Aligned_cols=297 Identities=12% Similarity=0.118 Sum_probs=216.2
Q ss_pred HHHHHcCCHHHHHHHHHhcCC---CCc-chHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHhcCC
Q 006246 207 DGYLKCGDIEGAKELFKSTKD---KNT-GSYNAMISGFARFGRFEEARKLFNEMNDK------DEITWSAIIDGYTKDGY 276 (654)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~ 276 (654)
.+|....+.++++.-...... |+. ..-+....+.-...++++|+.+|+++.+. |..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344455556666555544433 222 22233334455678899999999998764 556777665 344332
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 006246 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 356 (654)
.. +.++-+-.-.=-+-.+.|...+.+.|+-.+..++|...|+.+++.+ +....+|+.+.+-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22 2222221111113334677888888899999999999999999987 44677889999999999999999999998
Q ss_pred cCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCc
Q 006246 357 MKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV 433 (654)
Q Consensus 357 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~ 433 (654)
..+ +|-..|-.|..+|.-.+...=|+-.|++..+.. +-|...|..|..+|.+.++.++|+..|.....- | ..+.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccch
Confidence 775 477899999999999999999999999998852 336779999999999999999999999999872 3 3355
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHH
Q 006246 434 EHYGCIVDLLGRAGYLAEAEEVISSM-------P-MEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDV 504 (654)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a 504 (654)
..|..|.++|-+.++.++|...|++- + ..|. ..+.--|..-+.+.+++++|...+.+.+.-++ ..++|
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~---e~eea 543 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET---ECEEA 543 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc---hHHHH
Confidence 78899999999999999999988764 1 2232 22223366677899999999999888887644 45788
Q ss_pred HHHHHHHHhc
Q 006246 505 AKMRKLMKER 514 (654)
Q Consensus 505 ~~~~~~m~~~ 514 (654)
..++..+++.
T Consensus 544 k~LlReir~~ 553 (559)
T KOG1155|consen 544 KALLREIRKI 553 (559)
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=3.4e-11 Score=124.98 Aligned_cols=220 Identities=13% Similarity=0.015 Sum_probs=144.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHH
Q 006246 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA-------VLGTALVDMY 341 (654)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y 341 (654)
..+...|++++|.+.++++.+.. +-+...+..+...+.+.|+++.+.+++..+.+.+..++. .++..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444432 112333444444444555555555555555444322111 1223334444
Q ss_pred HHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006246 342 AKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQ 418 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 418 (654)
.+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 444556667777777654 36777888888899999999999999888874 4454221 3334445688899999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+-
T Consensus 316 ~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99888874 3344556788889999999999999999887 567898888899999999999999999999988753
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.2e-10 Score=121.53 Aligned_cols=281 Identities=15% Similarity=0.081 Sum_probs=184.9
Q ss_pred HHcCCHHHHHHHHHhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH--hHHHHHHHHHHhcCChHHHHH
Q 006246 210 LKCGDIEGAKELFKSTKD--KNT-GSYNAMISGFARFGRFEEARKLFNEMND--KDE--ITWSAIIDGYTKDGYYKEALE 282 (654)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 282 (654)
...|+++.|.+.+.+..+ |+. ..+-....++.+.|+.+.|.+.+.+..+ |+. ...-.....+.+.|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 455666666666655544 222 2233334555666777777777766532 222 223334666677777777777
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH-------HHHHHHHHcCCHHHHHHHHh
Q 006246 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT-------ALVDMYAKCGRLDMAWKVFE 355 (654)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~g~~~~A~~~~~ 355 (654)
.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+...... .++..-......+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777664 2244456666777777777777777777777765433222211 11111122223445555666
Q ss_pred hcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 006246 356 DMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT--F-ACVLSACAHAGMIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 356 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~g~ 429 (654)
..+. .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6654 37888889999999999999999999999886 344432 1 11222233457888899999888875333
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 430 DPEVEHYGCIVDLLGRAGYLAEAEEVISS--M-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 430 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33224566889999999999999999994 3 5679999899999999999999999999998866
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=5.5e-09 Score=110.43 Aligned_cols=447 Identities=14% Similarity=0.085 Sum_probs=302.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHHH
Q 006246 43 HTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVIS 119 (654)
Q Consensus 43 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 119 (654)
.|+++.|..++..+++..+ .++..|-.|...|-. .|+.+++...+-... +.|..-|-.+.....+.|++.+|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEq--rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQ--RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHH--cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 4999999999999999863 467789999999999 999999998775433 4566789999998999999999999
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHH----HHHHHHHhcCCHHHHHHHHhcCC
Q 006246 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS----SGIQMYACFGCVNKARQILDDGS 195 (654)
Q Consensus 120 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~ 195 (654)
.|.+..+.. +++...+---...|-+.|+...|..-+.++.+...+.|..-.. ..+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999863 3343333334455788999999999999999875433332222 34555677787788988888753
Q ss_pred C-----CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC----C----------------------CcchHH----HHHHHH
Q 006246 196 K-----SDVICWNALIDGYLKCGDIEGAKELFKSTKD----K----------------------NTGSYN----AMISGF 240 (654)
Q Consensus 196 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~----------------------~~~~~~----~li~~~ 240 (654)
. .+...++.++..|.+...++.|......+.. + +..+|. -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 3 3566788999999999999999888776653 1 111111 112223
Q ss_pred Hh--cCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhH
Q 006246 241 AR--FGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314 (654)
Q Consensus 241 ~~--~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (654)
.. .+...+++.-|-.... .++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..++-..|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 33 3444444444433322 24557888999999999999999999999887555567788888999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH------------HHHHHHHHHHHHcCChhHHH
Q 006246 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV------------FTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------------~~~~~li~~~~~~g~~~~A~ 382 (654)
|.+.|..++... +.+..+--.|...|.+.|+.++|.++++.+..+|. ...-.....+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999998865 34556666788899999999999999999876551 11222345566777776655
Q ss_pred HHHHHHhhcC----------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHH-----HHHHHcCCCCCc--
Q 006246 383 ELFFKMQREK----------------------MRPDRITFACVLSACAHAGMIDRGLQALT-----YMQQMYGIDPEV-- 433 (654)
Q Consensus 383 ~l~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~-----~~~~~~g~~p~~-- 433 (654)
..-..|+... .+-...+...++.+-.+.++.....+... ......++.-+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5544444321 11112222333333333333211111110 111112444332
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 434 EHYGCIVDLLGRAGYLAEAEEVISSMP-----MEPNA---AVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
..+.-++..+.+.|++++|+.++..+- ..++. ..=...+.++...+++..|....+-++..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345667778888999999998887761 22222 12244556677888888888888888775
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.1e-10 Score=121.02 Aligned_cols=275 Identities=10% Similarity=0.093 Sum_probs=210.4
Q ss_pred hcCCHHHHHHHHhcCCCC--C-hhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--CcchHH--HHHHHHHhcCCHHHHHHH
Q 006246 180 CFGCVNKARQILDDGSKS--D-VICWNALIDGYLKCGDIEGAKELFKSTKDK--NTGSYN--AMISGFARFGRFEEARKL 252 (654)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~--~li~~~~~~g~~~~A~~~ 252 (654)
..|+++.|++.+...... + ...|-.......+.|+++.|...|.++.+. +..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999999886443 2 333333344558999999999999999873 333232 336788999999999999
Q ss_pred HHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 253 FNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK-------FVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 253 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
++++.+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998753 6778889999999999999999999999998755332 12333343334444556666666665
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 402 (654)
.+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+.. +-|...+..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~ 333 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWST 333 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 433 345778888999999999999999999988876433222234455556699999999999998863 234556788
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+...|.+.+++++|.+.|+...+ ..|+...|..|..++.+.|+.++|.+.+++.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999986 4799999999999999999999999999865
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.2e-09 Score=107.00 Aligned_cols=407 Identities=13% Similarity=0.079 Sum_probs=204.3
Q ss_pred CCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006246 80 FSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (654)
++++..|+.+|++.. .+++..|-..+..=.++..+..|..++++....=...|..-| -.+-.=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 566677777777665 355556666666666666777777777766653212222222 1222223456677777777
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CC---
Q 006246 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD--GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KN--- 229 (654)
Q Consensus 157 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--- 229 (654)
+.-.. ..|+...|++.|++-.+...++.|+.++++ +..|++.+|--...-=.++|+...|..+|....+ .|
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 76654 457777777777777777777777777776 3566777776666666667777777776666554 12
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhcCC----C-CHhHHHHHHHHHHhcCChHHHHHH--------HHHHHhCCCCCC
Q 006246 230 -TGSYNAMISGFARFGRFEEARKLFNEMND----K-DEITWSAIIDGYTKDGYYKEALEV--------FNEMQRDKIKPR 295 (654)
Q Consensus 230 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~ 295 (654)
...+++....=.++..++.|.-+|.-..+ . ....|......=-+-|+....... |+.+...+ +-|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCC
Confidence 22333333333445555556555544332 1 112222222222223332221111 22222222 234
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch------hHHHHHHHH---HHHcCCHHHHHHHHhhcCC---CCHH
Q 006246 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA------VLGTALVDM---YAKCGRLDMAWKVFEDMKM---KEVF 363 (654)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~---y~~~g~~~~A~~~~~~m~~---~~~~ 363 (654)
-.++-..+..-...|+.+...++|+.++..-.+... .+|--+=-+ =....+.+.+.++|+...+ ...+
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 444444455555555666666666655543322110 111111000 1123455555555554433 1222
Q ss_pred HHHHHH----HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH
Q 006246 364 TWNAMI----GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439 (654)
Q Consensus 364 ~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l 439 (654)
|+.-+- .--.++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|....++++..+ ++ +.+..+|...
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FS-PENCYAWSKY 477 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-hHhhHHHHHH
Confidence 332222 22233455555555555544 3345555555555555556666666666665554 11 2234445555
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 440 VDLLGRAGYLAEAEEVISSMPMEP----NAAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
...=...|+.+.|..+|+-.-.+| -...|.+.++--...|.++.|..+|+++++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555555566666666665542222 1344555555555556666666666666553
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.8e-09 Score=105.68 Aligned_cols=420 Identities=12% Similarity=0.077 Sum_probs=233.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--CCc-chHHHHHHHHHhCCCchHHHHH
Q 006246 44 TSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--PNV-FVWNSVLRACLEHNEPWRVISL 120 (654)
Q Consensus 44 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~ 120 (654)
+++..|+.+|.+++.-. ..+..+|-.-+.+=.+ +..+..|+.+|++... |-+ ..|...+-.=-..|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emk--nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMK--NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHh--hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44556666666666544 3455566666666666 6667777777776542 222 2355545444456677777777
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-
Q 006246 121 YSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK--S- 197 (654)
Q Consensus 121 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~- 197 (654)
|++-.+. .|+...|.+.++.=.+-..++.|+.+++..+-. .|++..|-..+..-.++|.+..|+.+|+.... .
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 7766653 577777777777666666777777777766643 46666666666666677777777777765421 1
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--C---CcchHHHHHHHHHhcCCH---HHHHHHH-----HhcCCC--
Q 006246 198 ---DVICWNALIDGYLKCGDIEGAKELFKSTKD--K---NTGSYNAMISGFARFGRF---EEARKLF-----NEMNDK-- 259 (654)
Q Consensus 198 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~---~~A~~~~-----~~~~~~-- 259 (654)
+...+++...-=.++..++.|.-+|+-... | ....|......=-+.|+. +++.--= +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 122233333333345556666666654433 1 122333333333334443 3332211 112222
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------chHHHHHHHH---HhcCChhHHHHHHHHHHHcCCC
Q 006246 260 -DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK-------FVLSCVLAAC---ASLGALDQGIWIHDHVKRNSIC 328 (654)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 328 (654)
|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-+| ....+.+.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 4445656666666667777777777776654 34421 1121111111 2345666777777666662 33
Q ss_pred CchhHHHHHHHHHH----HcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 006246 329 VDAVLGTALVDMYA----KCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402 (654)
Q Consensus 329 ~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 402 (654)
....++.-+--+|+ ++.++..|.+++-.... |-.-++..-|..=.+.++++....+|++.++-+ +-|..+|..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 34444444444443 45667777777665543 444556666666666677777777777776654 225556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLG 473 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 473 (654)
....-...|+.+.|..+|+.+.....+..-...|.+.|+.=...|.++.|..+++++ ...+...+|-++..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 666666667777777777766653222222334555556556677777777777665 22334445655443
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.5e-11 Score=125.57 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=215.0
Q ss_pred CCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHhcCChHHHHHH
Q 006246 213 GDIEGAKELFKSTKD--K-NTGSYNAMISGFARFGRFEEARKLFNEMNDK------DEITWSAIIDGYTKDGYYKEALEV 283 (654)
Q Consensus 213 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 283 (654)
-+..+|+..|..... + ...+...+..+|...+++++|+++|+.+.+. +...|.+.+--+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356788888887543 2 3345677788899999999999999988753 56677776654432 223333
Q ss_pred H-HHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH
Q 006246 284 F-NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362 (654)
Q Consensus 284 ~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 362 (654)
+ +.+.... +-.+.||..+.++|+-+++.+.|++.|+++++.. +....+|+.+..-+....++|.|...|+.....|+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3333332 4456789999999999999999999999988765 33678888888889999999999999999887665
Q ss_pred H---HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHH
Q 006246 363 F---TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGC 438 (654)
Q Consensus 363 ~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~ 438 (654)
. +|.-|...|.+.++++.|+-.|+++.+-+. -+.+....+...+-+.|+.|+|+++++++.. +.|. +-.--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 4 556678889999999999999999988542 2566777777888899999999999999976 3333 333334
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 439 IVDLLGRAGYLAEAEEVISSMP-MEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+..+...+++++|+..+++++ +.| +..++..++..|.+.|+.+.|+.-|.-+.+++|...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5677888999999999999994 445 578888999999999999999999999999999864
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-09 Score=107.08 Aligned_cols=370 Identities=11% Similarity=0.025 Sum_probs=222.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhhHH-H
Q 006246 96 PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD-VHVKS-S 173 (654)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~-~ 173 (654)
.|...+-...-.+.+.|....|.+.|......- +-.-..|.-|-..+ .+. ++....+. |.+.| ..... -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHh-cCcccchHHHHHH
Confidence 444443334444566778888888887776431 11222333222222 112 22222222 22221 11111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhc----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC------CcchHHHHHHHHHhc
Q 006246 174 GIQMYACFGCVNKARQILDD----GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDK------NTGSYNAMISGFARF 243 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~ 243 (654)
+..+|-.....+++.+-.+. +.+.+...-+....+.-...++++|+.+|+++.+. |..+|+.++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 22333333344444433322 23333333334444455667788888888887764 344666655433332
Q ss_pred CCHH-HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 244 GRFE-EARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 244 g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
.++. -|..++ .+.+--+.|...+.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-+..+
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 122222 2222234456666777777888888888888888764 234456777777788888888888888888
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT 399 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 399 (654)
++.+ +.|-..|-.|..+|.-.+...-|+-.|++... .|...|.+|..+|.+.++.++|++.|++....| ..+...
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 8765 55777888888888888888888888887764 388889999999999999999999999888876 336678
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHc---CCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMY---GIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGA 474 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 474 (654)
+..|...+-+.++.++|.+.|++..+.. |...+ .....-|..-+.+.+++++|........ .
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-------------~ 535 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-------------K 535 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-------------c
Confidence 8888999999999999998888877642 22222 1122224445667777777766544431 1
Q ss_pred HHHhCChHHHHHHHHHHHh
Q 006246 475 CRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~ 493 (654)
. .-..++|..+++++..
T Consensus 536 ~--~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G--ETECEEAKALLREIRK 552 (559)
T ss_pred C--CchHHHHHHHHHHHHH
Confidence 1 2235666666666554
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.3e-12 Score=129.44 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=102.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 006246 237 ISGFARFGRFEEARKLFNEM-ND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311 (654)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (654)
...+.+.|++++|+++++.. .. .|...|..+.......+++++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555666666666666432 11 24455555666666677777777777777665422 34445555544 56777
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006246 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHGRADDAIELFF 386 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~ 386 (654)
+++|.++.....+.. ++...+..++..|.+.|+++++.++++.+.. .+...|..+...+.+.|+.++|++.|+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777766654432 3455566677778888888888888777542 366778888888889999999999999
Q ss_pred HHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C-CCC
Q 006246 387 KMQREKMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P-MEP 463 (654)
Q Consensus 387 ~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p 463 (654)
+..+. .| |......++..+...|+.+++.+++....+. .+.+...+..+..+|...|+.++|+..+++. . .+.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 98886 45 4567778888888899999988888888874 3556677888899999999999999999887 2 234
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 464 NAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 464 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
|+.+...+..++...|+.++|.++.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788888889999999999999988888765
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=1.8e-10 Score=120.22 Aligned_cols=277 Identities=14% Similarity=0.077 Sum_probs=194.8
Q ss_pred hcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcc--hHHHHHHHHHhcCCHHHHHHH
Q 006246 180 CFGCVNKARQILDDGSKS---DVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTG--SYNAMISGFARFGRFEEARKL 252 (654)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~--~~~~li~~~~~~g~~~~A~~~ 252 (654)
..|+++.|.+.+.+.... ....+-.....+.+.|+.+.|...|.+..+ |+.. ........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456777777766654221 222333444566778888888888887644 4432 334457778889999999999
Q ss_pred HHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHHcC
Q 006246 253 FNEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC---ASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 253 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~ 326 (654)
++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.+..+.+..
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 998875 3 66778889999999999999999999999887543322211111222 22233333344555554433
Q ss_pred C---CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CHHH---HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH-
Q 006246 327 I---CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK--EVFT---WNAMIGGLAMHGRADDAIELFFKMQREKMRPDR- 397 (654)
Q Consensus 327 ~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 397 (654)
. +.+...+..++..+...|+.++|.+++++..+. |... +..........++.+.+++.+++..+. .|+.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~ 333 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKP 333 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCCh
Confidence 2 247888889999999999999999999988763 3221 122222334457788899999888775 4544
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 398 --ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 398 --~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
....++...|.+.|++++|.++|+.... +...|+...+..+...+.+.|+.++|.+++++.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456788899999999999999996444 356899999999999999999999999999874
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=1.1e-09 Score=115.57 Aligned_cols=357 Identities=13% Similarity=0.138 Sum_probs=192.5
Q ss_pred CCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006246 80 FSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVH 156 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (654)
.|++++|.+++.++.+ .+..+|.+|...|-+.|+.++++..+-..-... +-|...|..+-.-..+.|+++.|.-.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4889999999988773 456788899999999999888887765554432 235567777777777888899999999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhhHHH----HHHHHHHcCCHHHHHHHHHhcCC-
Q 006246 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS----DVICWNA----LIDGYLKCGDIEGAKELFKSTKD- 227 (654)
Q Consensus 157 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~- 227 (654)
.++++.. +++....-.-..+|-+.|+...|..-|.++... |..-... ++..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8888876 444445555667777778877777766665222 2122222 23344455555666666555443
Q ss_pred ----CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHH--hCCCCCCcc
Q 006246 228 ----KNTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEVFNEMQ--RDKIKPRKF 297 (654)
Q Consensus 228 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~ 297 (654)
-+...++.++..|.+...++.|......+.. +|..-|.+- - .++ .-+.-.. ..++.++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~~-----~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RRR-----EEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hcc-----ccccccccCCCCCCccch
Confidence 1233455555555555555555555444332 111000000 0 000 0000000 001111111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC----CHHHHHHHHHH
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKRNS--ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK----EVFTWNAMIGG 371 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~ 371 (654)
. --+.-++......+....+.....+.. +..++..|.-+.++|...|++.+|..+|..+... +...|--+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1 011222333444444444444444444 2334555556666666666666666666666542 44566666666
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH-------HcCCCCCcchHHHHHHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDR-ITFACVLSACAHAGMIDRGLQALTYMQQ-------MYGIDPEVEHYGCIVDLL 443 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~g~~p~~~~~~~li~~~ 443 (654)
|...|.+++|++.|++.+.. .|+. ..-..|...+.+.|+.++|.+.++.+.. ..+..|+........+.|
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 66666666666666666553 3332 2334444555566666666666665321 012333344444445555
Q ss_pred HHcCCHHH
Q 006246 444 GRAGYLAE 451 (654)
Q Consensus 444 ~~~g~~~~ 451 (654)
...|+.++
T Consensus 537 ~~~gk~E~ 544 (895)
T KOG2076|consen 537 FQVGKREE 544 (895)
T ss_pred HHhhhHHH
Confidence 55555554
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.2e-09 Score=105.67 Aligned_cols=374 Identities=11% Similarity=0.055 Sum_probs=220.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhhHHHHHHHH
Q 006246 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPN-KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGD-VHVKSSGIQMY 178 (654)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y 178 (654)
+-....-|.++|.+++|++.|.+..+. .|| +..|...-.+|...|+++++.+--...++.. |+ +-.+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444555677899999999999999875 688 7778888888899999999988888777654 43 44566667778
Q ss_pred HhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCH------------HHHHHHHHhcCCC---Ccc------------
Q 006246 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDI------------EGAKELFKSTKDK---NTG------------ 231 (654)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~------------~~A~~~~~~m~~~---~~~------------ 231 (654)
-..|++++|..-. |-..+..++....-. ..+.+.+.+-..| ...
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7888888875421 111222222211111 1222222211111 111
Q ss_pred -----------hHHHHHHHHHh--cC---CHHHHHHHHHhcC-------CCC---------HhHHHHHHHHHHhcCChHH
Q 006246 232 -----------SYNAMISGFAR--FG---RFEEARKLFNEMN-------DKD---------EITWSAIIDGYTKDGYYKE 279 (654)
Q Consensus 232 -----------~~~~li~~~~~--~g---~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~g~~~~ 279 (654)
....+..++.. .+ .+..|...+.+-. ..+ ..+...-..-+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 11111111110 01 2223332222211 111 1111222222344577777
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 006246 280 ALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM 359 (654)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 359 (654)
|.+.|+..+.....++. .|--+...|.+..+.++..+.|..+.+.+ +.++.+|..-..++.-.+++++|..=|++...
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777765433322 25556666777777777777777777765 34556666667777777777777777777665
Q ss_pred C---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----
Q 006246 360 K---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE---- 432 (654)
Q Consensus 360 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---- 432 (654)
- ++..|-.+..+.-+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+ +.|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~ 498 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLI 498 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccc
Confidence 2 4556666666666677777788888777665 344455677777777777778888777777765 2333
Q ss_pred -----cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 433 -----VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 433 -----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
+.+.-.++..- -.+++..|++++++. .++| ....+.+|...-.+.|+.++|+++|++...+
T Consensus 499 ~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11111222222 237777777777776 4555 3566777777777778888888777776554
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.4e-12 Score=129.15 Aligned_cols=254 Identities=15% Similarity=0.155 Sum_probs=56.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH-HHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 006246 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVF-KACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183 (654)
Q Consensus 105 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (654)
...+.+.|++++|++++++......+|+...|-.++ ..+...++.+.|.+.++.+++.+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 334445555555555554333222123333332222 223344555555555555554432 233344444444 34455
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 006246 184 VNKARQILDDG--SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDE 261 (654)
Q Consensus 184 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 261 (654)
+++|.+++++. ..++...+..++..+.+.++++++..+++...... -...+.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~ 146 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP--------------------------AAPDSA 146 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------------------T-H
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--------------------------CCCCCH
Confidence 55555444443 11233334444444444455544444444321100 001233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
..|..+...+.+.|+.++|++.|++..+.. +-|......++..+...|+.+++.+++....+.. +.|+..+..+..+|
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 344444444444444444444444444431 1123333444444444444444444444444332 33334444455555
Q ss_pred HHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006246 342 AKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKM 388 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 388 (654)
...|+.++|...|++... .|......+..++.+.|+.++|.++.++.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555555555544432 24444444455555555555555554443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.6e-10 Score=118.24 Aligned_cols=276 Identities=13% Similarity=0.095 Sum_probs=201.8
Q ss_pred CHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCHH-HHHHH
Q 006246 183 CVNKARQILDDGSK---SDVICWNALIDGYLKCGDIEGAKELFKSTKD------KNTGSYNAMISGFARFGRFE-EARKL 252 (654)
Q Consensus 183 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~-~A~~~ 252 (654)
+..+|...|.+.+. ........+..+|...+++++|.++|+.+.+ .+..+|.+.+.-+-+.=... -|..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677777777522 1234445677888888999999999988875 36667877776654432222 12333
Q ss_pred HHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 006246 253 FNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAV 332 (654)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (654)
.+.. ...+.+|.++..+|.-+++.+.|++.|++..+.+ +-..++|+.+..-+.....+|.|...|..++... +.+-.
T Consensus 414 i~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYn 490 (638)
T KOG1126|consen 414 IDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYN 490 (638)
T ss_pred HhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhH
Confidence 3322 2357889999999999999999999999988753 2266788877777888888999998888877543 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
.|--|.-.|.|.++++.|+-.|++..+- +.+....+...+-+.|+.++|+++|+++.....+ |..+-..-...+..
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFS 569 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHh
Confidence 4444777899999999999999988763 6677777788888999999999999999876533 55555556666777
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
.++.++|.+.++++++ -++.+...|..++..|.+.|+.+.|+.-|.-+ ..+|.
T Consensus 570 ~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 570 LGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 8899999999999987 23344667888889999999999999888765 44454
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.2e-09 Score=100.47 Aligned_cols=290 Identities=13% Similarity=0.140 Sum_probs=169.0
Q ss_pred CCHHHHHHHHHhcCCCCcchH---HHHHHHHHhcCCHHHHHHHHHhcCC-CCH------hHHHHHHHHHHhcCChHHHHH
Q 006246 213 GDIEGAKELFKSTKDKNTGSY---NAMISGFARFGRFEEARKLFNEMND-KDE------ITWSAIIDGYTKDGYYKEALE 282 (654)
Q Consensus 213 g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~ 282 (654)
.+.++|.++|-+|.+.|+.|+ -+|.+.|-+.|.+|.|+++-+.+.+ ||. ...-.|..-|...|-+|.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 445555555555555444333 3455555555555555555555443 221 122334444555666666666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 283 VFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD----AVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
+|..+.+.+ ..-......++..|....++++|+++-..+.+.+-.+. ...|.-|...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666665543 22233455556666666666666666666555543332 2344455566666677788888887766
Q ss_pred CC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcch
Q 006246 359 MK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEH 435 (654)
Q Consensus 359 ~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~ 435 (654)
+. .+..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+. .+....
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~ 284 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADA 284 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccH
Confidence 53 333344456677888888888888888888743333346677788888899999888888888764 444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 006246 436 YGCIVDLLGRAGYLAEAEEVI-SSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKER 514 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~ 514 (654)
-..+.+......-.+.|...+ +.+.-+|+...+.-|+..-...+. +.+|.+...+...|...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae-----------------eg~~k~sL~~lr~mvge 347 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE-----------------EGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc-----------------ccchhhhHHHHHHHHHH
Confidence 555555554444455555544 455667888888777765443321 11344444555556555
Q ss_pred CCccCCcee
Q 006246 515 GIKTNPGSS 523 (654)
Q Consensus 515 g~~~~~~~s 523 (654)
.++..|.+.
T Consensus 348 ~l~~~~~YR 356 (389)
T COG2956 348 QLRRKPRYR 356 (389)
T ss_pred HHhhcCCce
Confidence 565555543
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.4e-08 Score=102.16 Aligned_cols=450 Identities=11% Similarity=0.013 Sum_probs=284.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhc--CCCCCcchHHHHHHHHHhCCCchHHHH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNS--VHKPNVFVWNSVLRACLEHNEPWRVIS 119 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 119 (654)
....+..|.-+-+.+...+ .||...--+..+|.- .|.++.|..+... +.+.|..........+.+...+++|+.
T Consensus 28 ~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~--~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 28 MQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYL--GRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554 344444445666666 6778888777654 447888888888888889999999998
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 006246 120 LYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDV 199 (654)
Q Consensus 120 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 199 (654)
++..-. +.-+.+.|-..=. +..-..+.+.+.+..-.+.++ .-.-...|......++|+..|.+....|+
T Consensus 104 vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~~Al~~D~ 172 (611)
T KOG1173|consen 104 VLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYKEALLADA 172 (611)
T ss_pred Hhcccc---hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHHHHHhcch
Confidence 887321 1111111110000 000000000000000000000 00011123333444445544444433333
Q ss_pred hhHHHHHHHHH--------------------HcC-CHHHHHHHHHhc----C----------------CCCcchHHHHHH
Q 006246 200 ICWNALIDGYL--------------------KCG-DIEGAKELFKST----K----------------DKNTGSYNAMIS 238 (654)
Q Consensus 200 ~~~~~li~~~~--------------------~~g-~~~~A~~~~~~m----~----------------~~~~~~~~~li~ 238 (654)
..+.++...-. -.+ +.+.-..+|+-. . +.+........+
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 33332211100 001 111111222211 0 124445555666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHH
Q 006246 239 GFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315 (654)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (654)
-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-+.+=.+|.+. .+-...+|-++.-.|...|+..+|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 6778899999999999988754 445666778899999998888888888876 355678898998888889999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC
Q 006246 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK 392 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 392 (654)
+..+.+..... +.-...|-.+...|+-.|+-|.|...+....+ ..-..+--+..-|.+.++.+-|.++|.+....
T Consensus 332 Rry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai- 409 (611)
T KOG1173|consen 332 RRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI- 409 (611)
T ss_pred HHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 99999887654 22345778889999999999999888866543 11122333455688899999999999988764
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc-CCCC----CcchHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCC
Q 006246 393 MRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMY-GIDP----EVEHYGCIVDLLGRAGYLAEAEEVISSM-P-MEPN 464 (654)
Q Consensus 393 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~ 464 (654)
-| |+..++-+.-...+.+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+++++|+..+++. . .+.|
T Consensus 410 -~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 410 -APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred -CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 44 55566666555667889999999999887421 1111 2345888999999999999999999987 2 3458
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 006246 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKE 513 (654)
Q Consensus 465 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~ 513 (654)
..++.++.-.|...|+++.|...|.+++.+.|++. -+.++.+.+.+
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~---~~~~lL~~aie 534 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI---FISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH---HHHHHHHHHHH
Confidence 99999999999999999999999999999999984 34444444443
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=1.1e-08 Score=98.82 Aligned_cols=275 Identities=17% Similarity=0.133 Sum_probs=189.4
Q ss_pred cCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHH
Q 006246 212 CGDIEGAKELFKSTKDK---NTGSYNAMISGFARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVF 284 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 284 (654)
.|++..|.++..+-.+. ....|..-..+--+.|+.+.|-+.+.+..++ +....-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555543331 1222333344445556666666666655443 2334555555666666666666666
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHHcCCHHHHHHHHhhc
Q 006246 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDA-------VLGTALVDMYAKCGRLDMAWKVFEDM 357 (654)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m 357 (654)
.++.+.+ +-+.........+|.+.|++.....+...+.+.+.-.+. .+++.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666554 223445555666666666666666666666666554432 34555665555555555556677777
Q ss_pred CC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc
Q 006246 358 KM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434 (654)
Q Consensus 358 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~ 434 (654)
+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..+-.+.+-++...-.+..+...+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 64 35667777888899999999999999999988777762 233467788888888888888887666666 6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.++.++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7889999999999999999999976 7889999999999999999999999999988775
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.4e-09 Score=102.49 Aligned_cols=341 Identities=15% Similarity=0.117 Sum_probs=228.3
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCCHHH
Q 006246 142 ACSITEADKEGVQVHAHVVKNGLCGD-VHVKSSGIQMYACFGCVNKARQILDDGSKSD---VICWNALIDGYLKCGDIEG 217 (654)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 217 (654)
-|.+.|.+++|.+.+.+++.. .|| +..|.....+|...|++++..+.-.+..+-+ +..+.--.+++-+.|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 367889999999999999985 677 7889999999999999999988877754433 4455666677888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCC------------HHHHHHHHHhcCC---CCHhHHH-----------------
Q 006246 218 AKELFKSTKDKNTGSYNAMISGFARFGR------------FEEARKLFNEMND---KDEITWS----------------- 265 (654)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~~~~---~~~~~~~----------------- 265 (654)
|+.-. |...+..++....- ...+.+-+..=.. |.....+
T Consensus 202 al~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 202 ALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 86532 12222222221111 1222222321111 1111111
Q ss_pred ------HHHHHHHh--cC---ChHHHHHHHHHHHhC-CCCCCcc---------hHHHHHHH--HHhcCChhHHHHHHHHH
Q 006246 266 ------AIIDGYTK--DG---YYKEALEVFNEMQRD-KIKPRKF---------VLSCVLAA--CASLGALDQGIWIHDHV 322 (654)
Q Consensus 266 ------~li~~~~~--~g---~~~~A~~~~~~m~~~-g~~p~~~---------t~~~ll~~--~~~~g~~~~a~~~~~~~ 322 (654)
.+..++.. .+ .+.+|...+.+-... -..++.. .-..++.+ ..-.|+.-.+.+-++.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 11111111 11 223333333221110 0111111 11111111 23357788888888888
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHH
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRI 398 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ 398 (654)
++....+ ...|--+..+|....+.++-.+.|++... .|..+|..-...+.-.+++++|..=|++.+.. .| +..
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 8876433 33366677889999999999999998775 36678888888888889999999999999885 44 455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------HHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN---------AAVW 468 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~ 468 (654)
.|..+--+..+.+.++++...|+..++ .++..++.|+.....+..+++++.|.+.|+.. .++|+ +.+-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 777777778899999999999999998 46667889999999999999999999999976 33333 3444
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 469 EALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 469 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+++-.-.+ +++..|+.+++++++++|...
T Consensus 508 Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 508 KALLVLQWK-EDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hhHhhhchh-hhHHHHHHHHHHHHccCchHH
Confidence 444444444 899999999999999999875
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1e-08 Score=99.09 Aligned_cols=282 Identities=12% Similarity=0.102 Sum_probs=197.4
Q ss_pred HHHHHHHh--CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 006246 103 SVLRACLE--HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180 (654)
Q Consensus 103 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 180 (654)
.+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++.+.--.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444443 588888888888876665222 234444555567778888888888888776446667777788888888
Q ss_pred cCCHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCH
Q 006246 181 FGCVNKARQILDD---GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKN-----------TGSYNAMISGFARFGRF 246 (654)
Q Consensus 181 ~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~ 246 (654)
.|+++.|+.-+++ |.+.++.......++|.+.|++.....++..+.+.. ..+|+.+++-....+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888876665 567778888888888899999999999988887642 23577777766666666
Q ss_pred HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 006246 247 EEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323 (654)
Q Consensus 247 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (654)
+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ -..+-.+.+.++.+.-++..+.-.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHH
Confidence 666667777764 2566667788888888888888888888888766655 222234456666666665555544
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 324 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
+.- +.++..+.+|...|.+.+.+.+|.+.|+...+ ++..+|+.+..+|.+.|+.++|.+.+++...
T Consensus 322 ~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 432 23446667777777777777777777776554 5667777777777777777777777766554
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=1.8e-08 Score=106.12 Aligned_cols=461 Identities=10% Similarity=0.045 Sum_probs=245.4
Q ss_pred cccCCCCCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCc
Q 006246 19 ISATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV 98 (654)
Q Consensus 19 ~~~~g~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~ 98 (654)
+..+|+.||..||..++. .++.-|+.+.|. +|..|.-........+++.++..... .++.+.|. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLia--rYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~--And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIA--RYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKE--ANDAENPK-------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHH--HHcccCCCcccc-chhhhhcccccccchhHHHHHhcccc--cccccCCC-------CCch
Confidence 345566666666666652 344455555555 56555555555555566666655555 55544433 4555
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMY 178 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 178 (654)
.+|+.|..+|.+.|+... ++..++ -...+...++..|....-..++..+. +.+.......+.+...
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~--c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIH--CCPHSLPDAENAILLL 149 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcc--cCcccchhHHHHHHHH
Confidence 566666666666665543 222222 01111122222222222222222111 1111111222333444
Q ss_pred HhcCCHHHHHHHHhcCCCCChhh-HHHHHHHHHH-cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 006246 179 ACFGCVNKARQILDDGSKSDVIC-WNALIDGYLK-CGDIEGAKELFKSTKD-KNTGSYNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
.-.|-++.+.+++..++...... ....++-+.. +..+++-....+...+ +++.+|.+++..-...|+++.|..++.+
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 45566666777766654321111 1111222222 2334555555555555 8999999999999999999999999999
Q ss_pred cCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHH-----------HHH
Q 006246 256 MNDKD----EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW-----------IHD 320 (654)
Q Consensus 256 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-----------~~~ 320 (654)
|.++. ..-|-.++-+ .++..-+..+++-|...|+.|+..|+...+-.+.++|....+.+ ++.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrs 306 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRS 306 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHH
Confidence 99763 3333344444 78888889999999999999999999888777766443322111 111
Q ss_pred HHHH-------------------------cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-------CHHHHHHH
Q 006246 321 HVKR-------------------------NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-------EVFTWNAM 368 (654)
Q Consensus 321 ~~~~-------------------------~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~l 368 (654)
.+.+ .|+.....+|...+. ...+|+-++..++-..+..+ ++..|..+
T Consensus 307 aa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 307 AACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred HHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 1110 122222333332222 22256666666666555532 34445444
Q ss_pred HHHHHHcC----------------------ChhHHHHHHHHHhhcCCCCCH----------------------------H
Q 006246 369 IGGLAMHG----------------------RADDAIELFFKMQREKMRPDR----------------------------I 398 (654)
Q Consensus 369 i~~~~~~g----------------------~~~~A~~l~~~m~~~g~~p~~----------------------------~ 398 (654)
+.-|.+.- ...+..++.... .||. .
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 44333221 111111111111 2221 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP-----MEPNAAVWEALLG 473 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~ 473 (654)
.-+.++..|...-+..++...-+..... -+ ...|..||+.+..-.+.++|..+.++.. ..-|..-+..+.+
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 2234444555555555555444444331 22 2568889999999999999999988873 2234455677778
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCC-----------------CchHHHHHHHHHHhcCCcc
Q 006246 474 ACRKHGEVEFGERLGKILLEMEPQNR-----------------RCDDVAKMRKLMKERGIKT 518 (654)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~a~~~~~~m~~~g~~~ 518 (654)
...+++....+..+.+.+.+.--+.+ .-+...++++.+...|+.-
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888888888877777766211111 3344555666666666644
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.4e-08 Score=95.23 Aligned_cols=264 Identities=12% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006246 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQI 190 (654)
Q Consensus 111 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 190 (654)
+.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|..+.++ ||...-..+...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl------------- 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLAL------------- 110 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHH-------------
Confidence 457788888888887642 112223344555577778888888888877753 333222111111
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------
Q 006246 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT---GSYNAMISGFARFGRFEEARKLFNEMNDKDE------ 261 (654)
Q Consensus 191 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 261 (654)
-.|..-|...|-++.|..+|..+.+.+. .....|+..|-+..+|++|+++-+++..-+.
T Consensus 111 ------------~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 111 ------------QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred ------------HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 1233334555555555555555544221 2334455555555555555555554433211
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 262 --ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 262 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
..|.-+...+....+.+.|..++.+..+.+. -....-..+.......|+++.|.+.++.+.+.+...-..+...|..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2344455555556667777777777666531 1222222334455566666666666666666655545555666666
Q ss_pred HHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
+|...|+.++....+.++.+ ++...-..+-..-....-.+.|..++.+-+.. +|+...|..++..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 66666666666666655543 22222233332222233334444443333332 4566555555553
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.9e-11 Score=85.12 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.1e-11 Score=86.31 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 006246 96 PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI 145 (654)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 145 (654)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=1.5e-08 Score=106.75 Aligned_cols=264 Identities=14% Similarity=0.039 Sum_probs=190.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 006246 52 AHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKP----NVFVWNSVLRACLEHNEPWRVISLYSEMVGV 127 (654)
Q Consensus 52 ~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 127 (654)
.+..+...|+.|+..+|.+||.-|+. .|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~--~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCT--KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcc--cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 44556678999999999999999999 99999998 88888733 4567899999888888876654
Q ss_pred CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC--CCCChhhHHHH
Q 006246 128 DSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG--SKSDVICWNAL 205 (654)
Q Consensus 128 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~l 205 (654)
.|-..||..|+.+|...||+..-..+-+.+. .+...+...|.-..-..++..+ .+.....-...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence 6888999999999999999766222222122 2223334444444444444432 22222222334
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHh-cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCChHHH
Q 006246 206 IDGYLKCGDIEGAKELFKSTKDK---NTGSYNAMISGFAR-FGRFEEARKLFNEMND-KDEITWSAIIDGYTKDGYYKEA 280 (654)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 280 (654)
+......|.++.+++++..+... ++... .++-... ...+++-........+ ++..+|.+++..-.-+|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 45557778888888888777642 11111 2332222 2345555555555555 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
..++.+|.+.|++.+..-|-.++-+ .++...+..+..-|.+.|+.|+..++.-.+....+.|.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999998888877755 78888899999999999999999999887777776555
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.6e-08 Score=101.69 Aligned_cols=272 Identities=14% Similarity=0.097 Sum_probs=190.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHH
Q 006246 164 LCGDVHVKSSGIQMYACFGCVNKARQILDDGS---KSDVICWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMI 237 (654)
Q Consensus 164 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 237 (654)
...+..+.....+-+...+++.+..++++... +.....+..-|.++...|+..+-..+=.++.+ ....+|-++.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455666666777778888999888888764 34455566667788888887776666666665 3567888888
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhH
Q 006246 238 SGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314 (654)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (654)
--|.-.|+.++|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+--+.--|.+.++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 88888899999999998876543 447888889999999999999888776553 11112223334445777888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC----------CHHHHHHHHHHHHHcCChhHHHHH
Q 006246 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK----------EVFTWNAMIGGLAMHGRADDAIEL 384 (654)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~l 384 (654)
|.+.|.++.... +.|+.+.+-+.-+..+.+.+.+|...|+....+ -..+|+.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 998888887764 557778888777777778888888888765521 223466677777777777777777
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 385 FFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 385 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
|++.+... +-|..|+.++.-.+...|+++.|...|.+.. .+.|+-.+-..++.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 77776653 3366677777777777777777777777664 45666554444443
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.4e-07 Score=88.71 Aligned_cols=278 Identities=10% Similarity=0.022 Sum_probs=185.3
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 006246 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW---SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304 (654)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (654)
.|+.....+...+...|+.++|+..|++...-|+.+. ....-.+.+.|+++....+...+.... +-....|-.-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 4566677777777777777777777777654433322 222233456677777766666665432 112222222223
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHH
Q 006246 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDA 381 (654)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 381 (654)
......+++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 3345566777777766666544 22333333334556677888888888876654 2778888899999999998888
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHh
Q 006246 382 IELFFKMQREKMRPDRITFACVL-SACA-HAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 382 ~~l~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (654)
.-+-+...+. ++.+..+...+. ..|. ....-++|..++++..+ +.|+ ....+.+...+.+.|+.++++.++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8777665543 233555555442 2222 22345778888887654 5676 34566778889999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 006246 459 M-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKER 514 (654)
Q Consensus 459 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~ 514 (654)
. ...||....+.|.+.+...+.+.+|...|..++.++|++. .+.+=.+.|.+.
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~---~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK---RTLRGLRLLEKS 517 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch---HHHHHHHHHHhc
Confidence 6 6779999999999999999999999999999999999985 333333445443
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.2e-08 Score=97.87 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=107.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDM 340 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (654)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------ 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------ 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C------------
Confidence 3456666666666777777777766665542 1223333444444445555555555555444432 1
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
.+...+..+...+...|++++|.+.|++..+....| +...+..+...+...|++++|.+.
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344444555555555555555555555432111 223444455556666666666666
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 420 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
+.+..+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666542 1223445556666666666666666666654 11 2245555566666667777777776666655443
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=9.3e-07 Score=90.38 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=81.1
Q ss_pred CCCChHHHHHHHHHHHHh-CCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 006246 42 CHTSWQHLKQAHAVILKS-GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISL 120 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 120 (654)
..+.+...+..|+..+.. .+.....+|...+..... .|-++-+..++++..+-++.+-+-.|..++..+++++|-+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~--~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVES--HGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 345555556666665543 223344556555665555 66666777777666655555566666666777777777666
Q ss_pred HHHhHhCC------CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC--CC--hhhHHHHHHHHHhcCCHHHHHHH
Q 006246 121 YSEMVGVD------SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC--GD--VHVKSSGIQMYACFGCVNKARQI 190 (654)
Q Consensus 121 ~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~~ 190 (654)
+...+... -+.+...|.-+-...++..+.-.... .+.+++.|+. +| ...|++|.+-|.+.|.+++|+.+
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66654321 11222233333333333322221111 1122222221 22 34678888888888888888888
Q ss_pred HhcC
Q 006246 191 LDDG 194 (654)
Q Consensus 191 ~~~~ 194 (654)
|++.
T Consensus 271 yeea 274 (835)
T KOG2047|consen 271 YEEA 274 (835)
T ss_pred HHHH
Confidence 8774
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=2.2e-08 Score=96.00 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=126.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (654)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356788889999999999999999998764 256788889999999999999999999998764 3344566666777
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDA 381 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 381 (654)
+...|++++|.+.+..+.+... ......+..+...|.+.|++++|.+.|++... .+...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888888776421 12233444455556666666666666555443 1334455555555555555555
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 382 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544 12233344444444445555555555554443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.7e-09 Score=98.18 Aligned_cols=228 Identities=10% Similarity=0.072 Sum_probs=188.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc
Q 006246 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC 344 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 344 (654)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+..+.+.|..++.+-++. ++.|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888999999999888888776 556678888888899999999998888887765 355666666677788888
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006246 345 GRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALT 421 (654)
Q Consensus 345 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 421 (654)
++.++|.++|+...+ .++.+...+..+|.-.++++-|+.+|+++++.|+. +...|+.+.-+|.-.+++|-++--|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998776 36667777778888999999999999999999977 77889999999999999999999999
Q ss_pred HHHHHcCCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 422 YMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 422 ~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
+.... --.|+ ..+|-.+.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|..+++-+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88873 33344 457888888888999999999999876 3333 5788999988889999999999999998888876
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.09 E-value=2.9e-06 Score=86.89 Aligned_cols=373 Identities=12% Similarity=0.145 Sum_probs=228.9
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC----------CCcchHHHHHHHH
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK----------PNVFVWNSVLRAC 108 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~----------~~~~~~~~li~~~ 108 (654)
...+.+-++.+..++.+-++.. |...+--|..+++ .+++++|-+.+..+.. .+-..|+-+-...
T Consensus 147 Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~--~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 147 FVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAK--SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHh--ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 4455666677888888777653 3345666777777 8889998888877652 2334566666666
Q ss_pred HhCCCchH---HHHHHHHhHhCCCCCCc--ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 006246 109 LEHNEPWR---VISLYSEMVGVDSKPNK--FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC 183 (654)
Q Consensus 109 ~~~g~~~~---A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (654)
+++-+.-. .-.+++.+... -||. ..|.+|..-|.+.|.++.|+.++++.++. ...+.-++.+.+.|+....
T Consensus 221 s~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 221 SQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH
Confidence 65543332 22334444332 3444 35677777788888888888888777664 2333344444444443322
Q ss_pred H----------------------HHHHHHHhcC---------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcC
Q 006246 184 V----------------------NKARQILDDG---------------SKSDVICWNALIDGYLKCGDIEGAKELFKSTK 226 (654)
Q Consensus 184 ~----------------------~~A~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (654)
- +-...-|+.+ .+.++..|..-+. ...|+..+-...|.+..
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHH
Confidence 1 1122222221 1223444444333 34566666666666654
Q ss_pred C---C------CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 227 D---K------NTGSYNAMISGFARFGRFEEARKLFNEMNDKD-------EITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 227 ~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
+ | -...|..+...|-..|+++.|..+|++..+-+ ..+|......=.+..+++.|+++.+.....
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 3 1 23468888999999999999999999987642 235666666667788899999988877542
Q ss_pred CCCC-----------C------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 006246 291 KIKP-----------R------KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353 (654)
Q Consensus 291 g~~p-----------~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 353 (654)
--.| . ...|+..+..-...|-++..+.+|+.+++..+.....+.| ....+-...-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHH
Confidence 1111 1 1223333444456678888889999998877643333332 33334445568899999
Q ss_pred HhhcCC----CCH-HHHHHHHHHHHHc---CChhHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHH
Q 006246 354 FEDMKM----KEV-FTWNAMIGGLAMH---GRADDAIELFFKMQREKMRPDRITFACVLSA--CAHAGMIDRGLQALTYM 423 (654)
Q Consensus 354 ~~~m~~----~~~-~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~ 423 (654)
+++-.. |++ ..||+-+.-+.+. -+.+.|..+|++.++ |++|...-+.-|+.+ --..|....|+.+++++
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 988664 454 4688776665542 368899999999998 777766544333332 22457777777777765
Q ss_pred HH
Q 006246 424 QQ 425 (654)
Q Consensus 424 ~~ 425 (654)
..
T Consensus 613 t~ 614 (835)
T KOG2047|consen 613 TS 614 (835)
T ss_pred Hh
Confidence 54
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=2e-08 Score=109.04 Aligned_cols=176 Identities=12% Similarity=-0.030 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EVFTWNAMIGGLAMHGRADDAIELFFK 387 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 387 (654)
++++|...++++.+.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566666666666554 33455556666666666667777666666553 2 345566666666667777777777776
Q ss_pred HhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 388 MQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 388 m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
..+. .|+.. .+..++..+...|++++|...++++.+. ..|+ ...+..+..+|...|++++|.+.++++ +..|+
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 6664 23321 2223333444566666677666666542 1232 333555666666677777777766665 23333
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 465 -AAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 465 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
...++.+...+...| +.|...++++++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 333444444555555 355555555554
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=2.1e-08 Score=103.89 Aligned_cols=227 Identities=18% Similarity=0.155 Sum_probs=156.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHc-----CC--CCchh
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRD-----K-IKPRKFV-LSCVLAACASLGALDQGIWIHDHVKRN-----SI--CVDAV 332 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~ 332 (654)
+...|...|++++|..++++.++. | ..|...+ ...+...|...+++++|..+|+.+... |- +.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 556666666666666666655442 2 1122221 223445566777777777777776542 21 11244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC----------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHhhc---CCCCCH-
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKM----------KEV-FTWNAMIGGLAMHGRADDAIELFFKMQRE---KMRPDR- 397 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~- 397 (654)
+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 556667778888888888777765542 122 24666777888899999999999876542 123333
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHHHc----C-CCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC--------C
Q 006246 398 ---ITFACVLSACAHAGMIDRGLQALTYMQQMY----G-IDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM--------P 460 (654)
Q Consensus 398 ---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~ 460 (654)
.+++.|...|.+.|++++|.++|+++.... | ..+. ...++.|...|.+.+++.+|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999987753 1 1122 345778888999999999999999875 2
Q ss_pred CCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 461 MEPN-AAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 461 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
..|+ ..+|..|...|...|++|.|+++.++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3454 57899999999999999999999988874
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.2e-06 Score=83.44 Aligned_cols=417 Identities=14% Similarity=0.090 Sum_probs=224.9
Q ss_pred hhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHH--HHHHHH--hCCC
Q 006246 38 LNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNS--VLRACL--EHNE 113 (654)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~~--~~g~ 113 (654)
......+++++|.+.-..++..++. |...+-+=+-+..+ .+.+++|+.+.+.-..-. +++. +=.+|+ +.+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq--~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQ--LDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhh--hhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 4566788999999999999988744 34444444445566 789999997776544211 2222 234444 6889
Q ss_pred chHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 006246 114 PWRVISLYSEMVGVDSKPNK-FTYPTVFKACSITEADKEGVQVHAHVVKNGLCG-DVHVKSSGIQMYACFGCVNKARQIL 191 (654)
Q Consensus 114 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 191 (654)
.++|+..++ |..++. .+...-...|.+.+++++|..++..+.+.+.+. +......++..-. .-.+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 999999988 333333 355555566889999999999999998876432 2222222222211 11111 23
Q ss_pred hcCCCCChhhHHHH---HHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc-CCC-----CH-
Q 006246 192 DDGSKSDVICWNAL---IDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEM-NDK-----DE- 261 (654)
Q Consensus 192 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-----~~- 261 (654)
+..+.....+|..+ ...+...|++.+|+++++...+ +-.+- .+. +.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~------------------------~~~e~l~~~d~~eEeie 220 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR------------------------ICREKLEDEDTNEEEIE 220 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------HHHHhhcccccchhhHH
Confidence 33333223333332 2345566777777777655411 00000 000 00
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH---HHHhcCChhH--HHHHHHHH----------
Q 006246 262 ----ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA---ACASLGALDQ--GIWIHDHV---------- 322 (654)
Q Consensus 262 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~--a~~~~~~~---------- 322 (654)
..--.|.-.+-..|+.++|.++|...++.. .+|........+ +...-.++-. ....++..
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 011223334455666666666666666553 333322211111 1111111111 00011100
Q ss_pred -HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-HHHHHHHHHHHHH--cCChhHHHHHHHHHhhcCCCCCHH
Q 006246 323 -KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKE-VFTWNAMIGGLAM--HGRADDAIELFFKMQREKMRPDRI 398 (654)
Q Consensus 323 -~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~ 398 (654)
...........-+.++.+|. +..+.+.++-...+... ...+.+++....+ .....+|.+++...-+....-...
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 00000011222244555554 55667777776666532 3444444443322 224677777777766542221233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHH--------HHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC--------CCC
Q 006246 399 TFACVLSACAHAGMIDRGLQALT--------YMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM--------PME 462 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~ 462 (654)
.....+..-...|+++.|.+++. .+.+ .+..| .+-..++.++.+.++-+-|.+++.+. ...
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 44455556677899999998888 4444 23344 44566778888888777777776654 222
Q ss_pred CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 463 PN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 463 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+. ..+|.-+...-.++|+-++|...++++++.+|++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 21 33444444455677999999999999999888886
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1.9e-08 Score=109.17 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 006246 213 GDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNE 286 (654)
Q Consensus 213 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (654)
+++++|...+++..+ .+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 446777777777665 2455666677777777788888888877654 3 455677777888888888888888888
Q ss_pred HHhCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CH
Q 006246 287 MQRDKIKPRK-FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EV 362 (654)
Q Consensus 287 m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~ 362 (654)
..+.+ |+. ..+..++..+...|++++|...+..+.+...+.++..+..+...|...|+.++|.+.++++... +.
T Consensus 398 Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 398 CLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 87753 332 2233334445567788888888887776543334555667777888888888888888876543 33
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQRE-KMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..++.+...|...| ++|...++++.+. .-.|+...+..+ .+.-.|+-+.+..+ +++.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 45566666666666 4677766666542 122333333333 33444555555544 65554
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.1e-06 Score=81.60 Aligned_cols=459 Identities=11% Similarity=0.070 Sum_probs=266.9
Q ss_pred hcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchH
Q 006246 40 TKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWR 116 (654)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 116 (654)
.....++..|..+.......+-.-...+--=+..+|.+ .|++++|..++..+. .++...|-.|.-.+.-.|.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 44467778888777765533322111122222344555 899999999987765 3555666666666666678888
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 006246 117 VISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK 196 (654)
Q Consensus 117 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 196 (654)
|..+-....+ ++..-..++...-+.++-++-..+++.+... ..-..+|..+....-.+.+|++++.+...
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776554322 2333344455556777777777777766532 23344566665556678899999988643
Q ss_pred --CChhhHHH-HHHHHHHcCCHHHHHHHHHhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHH
Q 006246 197 --SDVICWNA-LIDGYLKCGDIEGAKELFKSTKD--KNT-GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDG 270 (654)
Q Consensus 197 --~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 270 (654)
|.-...|. +.-+|.+..-++-+.++++...+ ||. ...|.......+.=.-..|+.-...+.+.-...| ..+.-
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~~~ 258 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFIEY 258 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhHHH
Confidence 34444454 34467788888877777766654 433 3334433333332111112222222211100011 11222
Q ss_pred HHhc-----CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH-----HHH
Q 006246 271 YTKD-----GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL-----VDM 340 (654)
Q Consensus 271 ~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~ 340 (654)
.++. ..-+.|++++--+.+. .|.. -..++-.+.+.++..+|..+.+.+.. ..|...+...+ ..-
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhh
Confidence 2222 2446677766555442 2321 12333446677777777666554321 11222222222 222
Q ss_pred HHHcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKMK-----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
......+.-|.+.|+-.... ++.--.++.+.+.-..++++++-.+.....-=...|... ..+..+.+..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHH
Confidence 22223466677777765542 233456677777777788888888888776533334444 457888999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchH-HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 416 GLQALTYMQQMYGIDPEVEHY-GCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW-EALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
|.++|-.+... .++ +..+| ..|...|.++++.+-|.+++-++....+..+. ..+.+-|.+.+.+=-|-++|..+-.
T Consensus 412 aEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99999877642 333 33445 44567889999999999999888644454444 4455679999999999999999988
Q ss_pred cCCCCCCchH----HHHHHHHHHhcCCccCC
Q 006246 494 MEPQNRRCDD----VAKMRKLMKERGIKTNP 520 (654)
Q Consensus 494 ~~p~~~~~~~----a~~~~~~m~~~g~~~~~ 520 (654)
++|....|+. ...++..+....-.|.|
T Consensus 490 lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 490 LDPTPENWEGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred cCCCccccCCccchHHHHHHHHHcCCCCCCc
Confidence 9998887763 44466655544333333
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=1.4e-07 Score=93.71 Aligned_cols=217 Identities=15% Similarity=0.024 Sum_probs=152.0
Q ss_pred cCChHHHHHHHHHHHhCC-CCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 006246 274 DGYYKEALEVFNEMQRDK-IKPR--KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 350 (654)
.+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|..+.+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777777542 2222 2345666667788888888888888888765 44678889999999999999999
Q ss_pred HHHHhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 351 WKVFEDMKM--K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 351 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999998865 3 5678888999999999999999999999885 45443222222334556789999999977654
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 428 GIDPEVEHYGCIVDLLGRAGYLAE--AEEVISSM-PM----EP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 428 g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
...|+... ..++.. ..|+..+ +.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|.+
T Consensus 194 ~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33444322 233333 3455433 33333221 11 12 34689999999999999999999999999999854
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=1e-07 Score=98.88 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcC----------CCCChh-hHHHHHHHHHHcCCHHHHHHHHHhcCC-------CC-
Q 006246 169 HVKSSGIQMYACFGCVNKARQILDDG----------SKSDVI-CWNALIDGYLKCGDIEGAKELFKSTKD-------KN- 229 (654)
Q Consensus 169 ~~~~~li~~y~~~g~~~~A~~~~~~~----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~- 229 (654)
.+...|..+|...|+++.|..+++.. ..+.+. ..+.+...|...+++++|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666677777777776666552 122222 233456677788888888888877753 22
Q ss_pred ---cchHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 006246 230 ---TGSYNAMISGFARFGRFEEARKLFNEMND----------KDE-ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR 295 (654)
Q Consensus 230 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (654)
..+++.|...|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i----- 354 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI----- 354 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----
Confidence 23567777788899998888877765432 111 13455555566666666666666543321
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------CHHH
Q 006246 296 KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----------EVFT 364 (654)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~ 364 (654)
+..........-..+++.|...|.+.|++++|+++|+++..+ .-..
T Consensus 355 -----------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 355 -----------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred -----------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 000000000112346677777777777777777777766531 1235
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhh----cCC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQR----EKM-RPD-RITFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
.+.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 66677777777777777777766432 221 122 2366777777777777777777766654
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.6e-06 Score=89.23 Aligned_cols=412 Identities=12% Similarity=0.092 Sum_probs=230.5
Q ss_pred CCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc-c
Q 006246 60 GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKF-T 135 (654)
Q Consensus 60 g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 135 (654)
.++.|+.+|..|.-+..+ +|+++.+.+.|++... .....|+.+-..|...|....|+.+.+.-....-.|+.. .
T Consensus 318 ~~qnd~ai~d~Lt~al~~--~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSR--CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 356688999999999988 9999999999998653 334569999999999999999999988776543234333 3
Q ss_pred HHHHHHHHh-ccCCcHHHHHHHHHHHHh--CCC--CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 006246 136 YPTVFKACS-ITEADKEGVQVHAHVVKN--GLC--GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYL 210 (654)
Q Consensus 136 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 210 (654)
+-..-+.|. +.+..+++...-.+++.. +.. ..+..+..+.-+|...-. ....+. .
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s------e 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS------E 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH------H
Confidence 333333343 446667776666666652 111 122223333333321100 000000 0
Q ss_pred HcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHH
Q 006246 211 KCGDIEGAKELFKSTKDK---NTGSYNAMISGFARFGRFEEARKLFNEMND----KDEITWSAIIDGYTKDGYYKEALEV 283 (654)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 283 (654)
+.....++++.+++..+. |+.+.-.+.--|+-.++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 111123344444444321 222222222234444555555554444332 2455555555555555555555555
Q ss_pred HHHHHhCCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHH---------------------cC-------CCCchhHH
Q 006246 284 FNEMQRDKIKPR-KFVLSCVLAACASLGALDQGIWIHDHVKR---------------------NS-------ICVDAVLG 334 (654)
Q Consensus 284 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~ 334 (654)
.+..... -|+ ......-+..-...++.+++......+.. .| ......++
T Consensus 536 vd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 536 VDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 5544332 011 00000000000111222222211111110 01 01112222
Q ss_pred HHHHHHHHHcC---CHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 006246 335 TALVDMYAKCG---RLDMAWKVFEDMKMKE------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLS 405 (654)
Q Consensus 335 ~~li~~y~~~g---~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 405 (654)
..+.......+ ..+..+..+...+.++ ...|......+.+.++.++|...+.+..+.. +-....|.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence 22222211111 1111122222222232 2356677788888999999998888876642 224445555556
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEE--VISSM-PMEP-NAAVWEALLGACRKHGE 480 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 480 (654)
.+...|..++|.+.|..... +.|+ +..-.++..++.+.|+..-|.. ++..+ ..+| +...|-.++..+.+.|+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 67788999999999988764 5666 5678899999999998877777 87777 5556 69999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 006246 481 VEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 481 ~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.|-..|+-++++++.++
T Consensus 770 ~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNP 788 (799)
T ss_pred hHHHHHHHHHHHhhccCCC
Confidence 9999999999999998876
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=1.3e-06 Score=90.21 Aligned_cols=368 Identities=17% Similarity=0.187 Sum_probs=206.2
Q ss_pred CCCChHHHHHHHHHHHHh--------CCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 006246 42 CHTSWQHLKQAHAVILKS--------GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNE 113 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 113 (654)
..|+...++.+|+..--. |-..+-+-..+++.+..+ ++.+|..+|-+ +.+ -..-|..|....+
T Consensus 502 ai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k----kfk~ae~ifle--qn~---te~aigmy~~lhk 572 (1636)
T KOG3616|consen 502 AIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK----KFKEAEMIFLE--QNA---TEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh----hhhHHHHHHHh--ccc---HHHHHHHHHHHHh
Confidence 345666666666543211 222233444455555544 57777777743 222 1234566666777
Q ss_pred chHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 006246 114 PWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193 (654)
Q Consensus 114 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 193 (654)
+++|+.+-+. .|.+.-...-.+.++++...|.-+.|-++- .+.--..+.|..|.+.|....|.+....
T Consensus 573 wde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n 640 (1636)
T KOG3616|consen 573 WDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALN 640 (1636)
T ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcC
Confidence 8888776443 222211222233455555666655554321 1112234567888898888877665432
Q ss_pred --CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcch--------H-------------------HHHHHHHHhcC
Q 006246 194 --GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGS--------Y-------------------NAMISGFARFG 244 (654)
Q Consensus 194 --~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------~-------------------~~li~~~~~~g 244 (654)
-...|......+..++.+..-++.|-.+|+++..++... | ......+...|
T Consensus 641 ~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 641 DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH
Confidence 244455555556666666666666666666655432110 0 11122223344
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006246 245 RFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324 (654)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (654)
+++.|...|-+.. ..-..|.+-.....|.+|+.+++.++.... -..-|..+...|+..|+++.|.++|-+.
T Consensus 721 q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-- 791 (1636)
T KOG3616|consen 721 QLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-- 791 (1636)
T ss_pred hHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc--
Confidence 4444444443321 112234455667788888888888776642 3345677778889999999998888653
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 006246 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK--EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFAC 402 (654)
Q Consensus 325 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 402 (654)
..++--|+||.+.|+|++|.++-++...| .+..|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 792 -------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~----- 855 (1636)
T KOG3616|consen 792 -------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK----- 855 (1636)
T ss_pred -------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----
Confidence 24456788999999999999888877665 34556666666777888888877764432 2333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.|..|-+.|..+..+++.++--. ..-..+...+..-|-..|++.+|++-|-+.
T Consensus 856 aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 856 AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 34455666666665555443211 111223344445555566666666555444
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=2.4e-05 Score=80.63 Aligned_cols=440 Identities=12% Similarity=0.078 Sum_probs=275.8
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCCch
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK---PNVFVWNSVLRACLEHNEPW 115 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 115 (654)
-|-..+.+..+...-..+++. ++..+.+..-.--.+.. .|+-++|........+ ++-+.|..+.-.+-...+++
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~--lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNC--LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhc--ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 466778888888888888873 33333333322222333 6889999988877664 45678999888888888999
Q ss_pred HHHHHHHHhHhCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 006246 116 RVISLYSEMVGVDSKPNK-FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG 194 (654)
Q Consensus 116 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 194 (654)
+|++.|+..... .||. ..+.-+--.-++.++++.....-.+..+.. +.....|..++..+.-.|+...|..+++..
T Consensus 93 eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 4554 344444334467788888777777777653 344566888888888899999998887763
Q ss_pred -----CCCChhhHHHHH------HHHHHcCCHHHHHHHHHhcCCC--C-cchHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 006246 195 -----SKSDVICWNALI------DGYLKCGDIEGAKELFKSTKDK--N-TGSYNAMISGFARFGRFEEARKLFNEMNDK- 259 (654)
Q Consensus 195 -----~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 259 (654)
..++...+.-.. ....+.|..++|++.+...... | ...-..-...+.+.+++++|..++..+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 234444443322 3456788889998888766542 2 223345567788999999999999998864
Q ss_pred -CHhHHHHH-HHHHHhcCChHHHH-HHHHHHHhCCCCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 006246 260 -DEITWSAI-IDGYTKDGYYKEAL-EVFNEMQRDKIKPRKFV-LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335 (654)
Q Consensus 260 -~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (654)
|..-|+-. ..++.+-.+.-+++ .+|....+. .|.... ...=++......-.+....++....+.|+++ ++.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~ 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFK 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhh
Confidence 44444444 44443333444444 566555443 221111 1111111222222333445555666667554 344
Q ss_pred HHHHHHHHcCCHHH----HHHHHhhcC--------------CCCHHHHH--HHHHHHHHcCChhHHHHHHHHHhhcCCCC
Q 006246 336 ALVDMYAKCGRLDM----AWKVFEDMK--------------MKEVFTWN--AMIGGLAMHGRADDAIELFFKMQREKMRP 395 (654)
Q Consensus 336 ~li~~y~~~g~~~~----A~~~~~~m~--------------~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p 395 (654)
.+...|-.-...+- +..+...+. .|....|. -++..|-..|+++.|..+++..... .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 44444432111110 111111111 13444454 4677889999999999999998875 66
Q ss_pred CHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCC-CC--------H
Q 006246 396 DRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPME-PN--------A 465 (654)
Q Consensus 396 ~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~--------~ 465 (654)
+.+ -|..-...+.+.|++++|..+++...+. -.||...-.--+.-..|+.+.++|.++.....-. .+ .
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mq 480 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQ 480 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhh
Confidence 655 4555567899999999999999999872 3456554445566678999999999988776211 12 2
Q ss_pred HHHHHH--HHHHHHhCChHHHHHHHHHHHh
Q 006246 466 AVWEAL--LGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 466 ~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 493 (654)
-.|-.+ ..+|.+.|++.+|.+=|..+-.
T Consensus 481 cmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 481 CMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 234433 3567888888887766655443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=4.7e-08 Score=91.66 Aligned_cols=221 Identities=11% Similarity=0.060 Sum_probs=130.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcC
Q 006246 234 NAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL-SCVLAACASLG 310 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g 310 (654)
+.+..+|.+.|.+.+|++.|+...+ +-+.+|-.+-..|.+..+++.|+.+|.+-++. .|-.+|| ..+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4555666666666666666655442 34555666666666666666666666665543 3433333 23444555566
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFK 387 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 387 (654)
+.+.+.++|+.+.+.. +.++....++...|.-.++++.|+..|.++.+ .+...|+.+.-+|.-.++++-++--|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 6666666666666543 23344444455555556666666666665544 3555666666666666667777766666
Q ss_pred HhhcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 388 MQREKMRPDRI--TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 388 m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+..--.|+.. .|..+-......|++..|.+.|+.... .-....+.++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 66544344432 455565566666777777777776654 22333556666666667777777777777665
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=91.28 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=170.4
Q ss_pred HhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHH
Q 006246 241 ARFGRFEEARKLFNEMNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGI 316 (654)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (654)
.-.|++..+..-.+ .... +.....-+.+++...|+++.++ .+..... .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566776665444 2111 2334556677788888876544 3333333 566655555554444434444444
Q ss_pred HHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC
Q 006246 317 WIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395 (654)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 395 (654)
.-+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~- 161 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D- 161 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-
Confidence 444333322222 23344444456677889999999998876 56666777888999999999999999999875 3
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006246 396 DRITFACVLSACAH----AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWE 469 (654)
Q Consensus 396 ~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 469 (654)
+..+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| |+.++.
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 33445555555433 3468999999999876 45677888899999999999999999999876 3334 577788
Q ss_pred HHHHHHHHhCCh-HHHHHHHHHHHhcCCCCC---CchHHHHHHHHHH
Q 006246 470 ALLGACRKHGEV-EFGERLGKILLEMEPQNR---RCDDVAKMRKLMK 512 (654)
Q Consensus 470 ~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~---~~~~a~~~~~~m~ 512 (654)
.++......|+. +.+.+..+++....|+++ .+.+....|+...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 888888888887 778899999999999987 5555555665543
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=5.7e-06 Score=87.14 Aligned_cols=277 Identities=17% Similarity=0.203 Sum_probs=163.3
Q ss_pred HHHcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-HhHHHHHHHHHHhc-----CCh
Q 006246 209 YLKCGDIEGAKELFKSTKD--KN-TGSYNAMISGFARFGRFEEARKLFNEMNDK--D-EITWSAIIDGYTKD-----GYY 277 (654)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~-----g~~ 277 (654)
+...|++++|++.++.-.. .| ..........+.+.|+.++|..++..+.++ + ..-|..+..+.... ...
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccH
Confidence 3555666666666655433 22 223344555666666666666666666543 2 22233333333111 234
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 006246 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGAL-DQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 356 (654)
+...++|+++...- |.......+.-.+.....+ ..+...+....+.|+++ +++.|-..|....+.+-..+++..
T Consensus 94 ~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 55566666665442 3322222221111111112 23334444555556432 455555555544443333334333
Q ss_pred cC------------------CCCHHHH--HHHHHHHHHcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCCHHH
Q 006246 357 MK------------------MKEVFTW--NAMIGGLAMHGRADDAIELFFKMQREKMRPD-RITFACVLSACAHAGMIDR 415 (654)
Q Consensus 357 m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 415 (654)
.. .|....| .-+...|-..|++++|+++.++.++. .|+ ...|..-...+-+.|++++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 21 1223334 55677788899999999999999886 565 4477777888999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCC---CC--C----HHHH--HHHHHHHHHhCChHHH
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM---EP--N----AAVW--EALLGACRKHGEVEFG 484 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p--~----~~~~--~~ll~~~~~~g~~~~a 484 (654)
|.+.++..+.- -.-|...-+..+..+.|+|++++|.+++....- .| | ...| .....+|.+.|++..|
T Consensus 247 Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 247 AAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999998862 234455556667788899999999998887731 12 1 2244 4566789999999999
Q ss_pred HHHHHHHHhc
Q 006246 485 ERLGKILLEM 494 (654)
Q Consensus 485 ~~~~~~~~~~ 494 (654)
++-|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 9988887773
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=2.2e-06 Score=77.19 Aligned_cols=191 Identities=15% Similarity=0.066 Sum_probs=107.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHH
Q 006246 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDA 381 (654)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 381 (654)
.|...|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+-|++..+ .+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444433 22344455555555666666666666555443 2444555555556666666666
Q ss_pred HHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006246 382 IELFFKMQREKMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM- 459 (654)
Q Consensus 382 ~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 459 (654)
...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+. .+-.......+.....+.|++..|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 66666665532111 2235666666666666666666666666552 1222344555666666677777777666655
Q ss_pred -CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 460 -PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 460 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
...++..+.-..+..-...||.+.+-+.-.++....|..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 233556655556666667777777776666666666664
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=8.7e-06 Score=77.28 Aligned_cols=317 Identities=15% Similarity=0.131 Sum_probs=192.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHH---HHHHcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCH
Q 006246 173 SGIQMYACFGCVNKARQILDDGSKSDVICWNALID---GYLKCGDIEGAKELFKSTKDKNTGSYNAM---ISGFARFGRF 246 (654)
Q Consensus 173 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~ 246 (654)
-+-..+...|++.+|..-|......|+..|.++.+ .|...|+...|+.-|....+..+..+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34455555666666666666665555555555433 45555555555555555544222222221 2234555555
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006246 247 EEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (654)
+.|..-|+.+.+.++.- +....++.+.- +.+++ ......+..+...|+...++.....+++..
T Consensus 123 e~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEH---------WVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHH---------HHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 65555555554322100 00001111100 00111 112233444556778888888888887764
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH----
Q 006246 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK---MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT---- 399 (654)
Q Consensus 327 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---- 399 (654)
+.|+..+..-..+|...|++..|+.=+.... ..+....--+-..+...|+.+.++...++-++. .||...
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 5678888888888888888888876655443 346666666777778888888888888887764 566542
Q ss_pred HHHH---H------HHHHccCCHHHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 400 FACV---L------SACAHAGMIDRGLQALTYMQQMYGIDPE-----VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 400 ~~~l---l------~~~~~~g~~~~a~~~~~~~~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
|-.| . ......+.|.++.+..+...+. .|. ...+..+-..+...|++.+|++...+. .+.||
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 1111 1 1223456677777777776653 444 223445556677889999999998876 56665
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 006246 465 -AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMK 512 (654)
Q Consensus 465 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~ 512 (654)
+.++.--..+|....+++.|+.-|+++.+.+|++.+-.+..+--+.++
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk 388 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK 388 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999985444444333333
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.76 E-value=1.8e-06 Score=85.82 Aligned_cols=194 Identities=14% Similarity=0.035 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhc
Q 006246 201 CWNALIDGYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND--K-DEITWSAIIDGYTKD 274 (654)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 274 (654)
.|..+...|...|+.++|...|++..+ .+...|+.+...|...|++++|...|++..+ | +..+|..+...+...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 344455555666666666666665544 2345666666666666777777766766643 2 355666677777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH--HH
Q 006246 275 GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA--WK 352 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A--~~ 352 (654)
|++++|++.|++..+. .|+..........+...++.++|...+....... .++... ..+...+ .|+...+ .+
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~--lg~~~~~~~~~ 219 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFY--LGKISEETLME 219 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHH--ccCCCHHHHHH
Confidence 7777777777777664 3433221222222334556777777775544322 222221 1222222 3433322 22
Q ss_pred HHhhcCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 006246 353 VFEDMKM-------KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401 (654)
Q Consensus 353 ~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 401 (654)
.+.+-.. +...+|..+...+.+.|++++|+..|++..+.+ +||.+-+.
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 2221111 123467777778888888888888888877653 23444333
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=1.4e-05 Score=84.28 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=156.5
Q ss_pred HHHhcCCHHHHHHHHhcC--CCCCh-hhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcch-HHHHHHHHHhc-----CC
Q 006246 177 MYACFGCVNKARQILDDG--SKSDV-ICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGS-YNAMISGFARF-----GR 245 (654)
Q Consensus 177 ~y~~~g~~~~A~~~~~~~--~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~-----g~ 245 (654)
.+...|++++|.+.+++. .-.|. .........+.+.|+.++|..+|..+.+ |+... |..+..+..-. .+
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 345566666666666553 11232 2334455566677777777777777765 33333 33333333111 24
Q ss_pred HHHHHHHHHhcCCCCH--hHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 246 FEEARKLFNEMNDKDE--ITWSAIIDGYTKDGYY-KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 246 ~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
.+...++++++....+ ...-.+.-.+.....+ ..+...+..+...|+++ +|+.+-..|.......-..+++...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 5556666666543211 1111111111111122 23444556666677553 5555555555555444444554444
Q ss_pred HHc----C----------CCCchh--HHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHH
Q 006246 323 KRN----S----------ICVDAV--LGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIE 383 (654)
Q Consensus 323 ~~~----~----------~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 383 (654)
... + -+|... ++.-+...|-..|++++|++++++.... .+..|..-...|-..|++.+|.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 321 1 123332 3344566677788888888888877653 24567777777888888888888
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchH--------HHHHHHHHHcCCHHHHHHH
Q 006246 384 LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY--------GCIVDLLGRAGYLAEAEEV 455 (654)
Q Consensus 384 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~--------~~li~~~~~~g~~~~A~~~ 455 (654)
.++........ |...=+.....+.+.|++++|.+++....+. +..|....+ .....+|.|.|++..|++.
T Consensus 250 ~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 250 AMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888776533 6666666667777888888888888777653 433332222 2335677888888888876
Q ss_pred HHhC
Q 006246 456 ISSM 459 (654)
Q Consensus 456 ~~~m 459 (654)
|...
T Consensus 328 ~~~v 331 (517)
T PF12569_consen 328 FHAV 331 (517)
T ss_pred HHHH
Confidence 6654
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.76 E-value=5.7e-05 Score=79.48 Aligned_cols=334 Identities=15% Similarity=0.083 Sum_probs=207.0
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCC--c--c-hH
Q 006246 162 NGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSK---SDVICWNALIDGYLKCGDIEGAKELFKSTKDKN--T--G-SY 233 (654)
Q Consensus 162 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~--~-~~ 233 (654)
..+..|..+|..|.-....+|+++.+.+.|++..+ .....|+.+...|...|.-..|+.+++.-..+. + . .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888999999999999999999999998633 456789999999999999999999998876532 3 2 22
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCC-C
Q 006246 234 NAMISGF-ARFGRFEEARKLFNEMND--------KDEITWSAIIDGYTKD-----------GYYKEALEVFNEMQRDK-I 292 (654)
Q Consensus 234 ~~li~~~-~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~ 292 (654)
-..-..| -+.+.++++...-.++.. .....|-.+.-+|... -...++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222222 234566666655554432 1344555555554332 12457788888887754 2
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC--C---------
Q 006246 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK--E--------- 361 (654)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~--------- 361 (654)
.|+...| +---++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+..... +
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 3333333 33346777899999999999999877788999999999999999999999888765431 0
Q ss_pred ------------HHHHHHHHHHHH------Hc-----------------CChhHHHHHHHHHhh--------cC------
Q 006246 362 ------------VFTWNAMIGGLA------MH-----------------GRADDAIELFFKMQR--------EK------ 392 (654)
Q Consensus 362 ------------~~~~~~li~~~~------~~-----------------g~~~~A~~l~~~m~~--------~g------ 392 (654)
+.|...++...- +. ++..+|.+..+++.. .|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111111211111 00 111112211111110 00
Q ss_pred ---CC--CCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 006246 393 ---MR--PDR------ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-P 460 (654)
Q Consensus 393 ---~~--p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 460 (654)
+. |+. ..|......+.+.+..++|...+.+.... ..-....|......+...|..+||.+.|... -
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 111 11233344556666677776666666542 2233445555566677777777777777655 4
Q ss_pred CCCC-HHHHHHHHHHHHHhCChHHHHH--HHHHHHhcCCCCC
Q 006246 461 MEPN-AAVWEALLGACRKHGEVEFGER--LGKILLEMEPQNR 499 (654)
Q Consensus 461 ~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~ 499 (654)
..|+ +.+..++...+.+.|+...|.. +...+++++|.+.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 4554 5666777777777777777777 7777777777776
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=5.7e-05 Score=79.61 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=108.0
Q ss_pred HcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
..|+++.|+.+|.... -|-+++...|-.|+.++|-++-++- .|......+...|-..|++.+|+.+|-+.+.
T Consensus 924 S~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa- 995 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA- 995 (1416)
T ss_pred cccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Confidence 3455555555544332 2444444555556666665554442 3555666788888889999999988877643
Q ss_pred CCCCCcchHHHHHHHHHhcC---------------ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 006246 291 KIKPRKFVLSCVLAACASLG---------------ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE 355 (654)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 355 (654)
|...|..|-..+ +.-.|..+|++ .|. -...-+..|-|.|.+.+|+++-=
T Consensus 996 --------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 996 --------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHH
Confidence 333333332222 12222222222 221 11233456777888777766532
Q ss_pred hcCC--------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHhh----------cC----------------CCC
Q 006246 356 DMKM--------------KEVFTWNAMIGGLAMHGRADDAIELFFKMQR----------EK----------------MRP 395 (654)
Q Consensus 356 ~m~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----------~g----------------~~p 395 (654)
+-.+ .|+...+--..-|..+.++++|..++-...+ .| -.|
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCc
Confidence 2111 2444455555555666666666665433321 11 123
Q ss_pred CHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 396 DRI----TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 396 ~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
+.. ....+...|.+.|.+..|-+-|.+.-.+ -.-+.++.+.|+.++
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK----------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK----------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH----------HHHHHHHHhcCCcce
Confidence 333 3455566788888888777666654331 122455556665554
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=0.00012 Score=70.11 Aligned_cols=388 Identities=9% Similarity=0.037 Sum_probs=195.8
Q ss_pred CCChHHHHHHHhcCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006246 80 FSNFELALKVFNSVHK------PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 153 (654)
..++..|+.+++.-.. .++..| +..++.+.|++++|+..|.-+.+.. .|+...+..+.-...-.|...+|+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3567777777654331 122223 2334556677777777776666543 344444444443444455566665
Q ss_pred HHHHHHHHhCCCCChhhHHH-HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCc--
Q 006246 154 QVHAHVVKNGLCGDVHVKSS-GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNT-- 230 (654)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 230 (654)
++-.. .|+....+. |...--+.++-++-...-+.+... ..---+|.+.....-.+.+|+++|++....+.
T Consensus 112 ~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 112 SIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 54433 233333332 333333444443333333322111 12222333333333445666666666554322
Q ss_pred chHHH-HHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 006246 231 GSYNA-MISGFARFGRFEEARKLFNEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAAC 306 (654)
Q Consensus 231 ~~~~~-li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (654)
...|. +.-+|.+..-++-+.++++--.. | +.+.-|.......+.=....|.+-.+.+...+-.. |.. +.-.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f-~~~l 259 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPF-IEYL 259 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chh-HHHH
Confidence 22222 22234455545544444433221 1 23344444443333323333333333333322111 111 1111
Q ss_pred Hhc-----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC----
Q 006246 307 ASL-----GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGR---- 377 (654)
Q Consensus 307 ~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~---- 377 (654)
++. .+-+.|.+++--+.+. -| ..--.|+--|.+.+++++|..+.++....++.-|-.-...++..|+
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 111 2234455544443332 12 2223456668899999999999998876555444333333444443
Q ss_pred ---hhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHH
Q 006246 378 ---ADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 378 ---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 453 (654)
..-|.+.|+-.-..+..-|.+ --.++.+++--..++++.+-++..+.. +=...|... -.+..+++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHH
Confidence 445566665554444443332 233445555556678999999999887 333344433 45789999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHH-HHHHhCChHHHHHHH
Q 006246 454 EVISSMP--MEPNAAVWEALLG-ACRKHGEVEFGERLG 488 (654)
Q Consensus 454 ~~~~~m~--~~p~~~~~~~ll~-~~~~~g~~~~a~~~~ 488 (654)
++|-... .-.|..+|.+++. .|.++|.++.|-.++
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9998873 1136777776655 557778887775544
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.3e-05 Score=77.31 Aligned_cols=400 Identities=12% Similarity=0.057 Sum_probs=210.5
Q ss_pred hhcCCCChHHHHHHHHHHHHhCCCCchhHHHH--HHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchH
Q 006246 39 NTKCHTSWQHLKQAHAVILKSGHFQDHYVSGT--LVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWR 116 (654)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 116 (654)
+....+.++.|.. +++.... ..+++. +=.+|+..|.+..++|+..++...+-+..+-..-...+.+.|++++
T Consensus 55 alIq~~ky~~ALk----~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~yde 128 (652)
T KOG2376|consen 55 ALIQLDKYEDALK----LIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDE 128 (652)
T ss_pred hhhhhhHHHHHHH----HHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHH
Confidence 4455666776663 2332211 122222 4678887779999999999996665565566666677889999999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHH-HhccCCcHHHHHHHHHHHHhCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 006246 117 VISLYSEMVGVDSKPNKFTYPTVFKA-CSITEADKEGVQVHAHVVKNGLCG--DVHVKSSGIQMYACFGCVNKARQILDD 193 (654)
Q Consensus 117 A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 193 (654)
|+++|+.+.+.+.. | +...+.+ |...+....+. .+......| +-..+-.....++..|++.+|+++++.
T Consensus 129 aldiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 129 ALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999876432 2 2222221 11111111111 122222222 222233345567788999999999876
Q ss_pred C--------CCCChh----------hHHHHHHHHHHcCCHHHHHHHHHhcCCC---Ccch----HHHHHHHHHhcCCHH-
Q 006246 194 G--------SKSDVI----------CWNALIDGYLKCGDIEGAKELFKSTKDK---NTGS----YNAMISGFARFGRFE- 247 (654)
Q Consensus 194 ~--------~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~li~~~~~~g~~~- 247 (654)
. ...|.. .--.|.-.+...|+.++|..+|....+. |... -|.|+.+-....-++
T Consensus 201 A~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 201 ALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch
Confidence 4 221111 1123344567889999999999888753 3221 222222111111111
Q ss_pred HHHHHHHhcCCC---------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc--C
Q 006246 248 EARKLFNEMNDK---------------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL--G 310 (654)
Q Consensus 248 ~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g 310 (654)
.++..|+..... ....-+.++..|.. .-+.+.++..... +..| .+.+..++..+.+. .
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~ 355 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSP-ESLFPILLQEATKVREK 355 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHH
Confidence 222233322211 11111222333322 2222222222111 1122 23344444443322 2
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh--------hcCC--CCHHHHHHHHHHHHHcCChhH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFE--------DMKM--KEVFTWNAMIGGLAMHGRADD 380 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------~m~~--~~~~~~~~li~~~~~~g~~~~ 380 (654)
....+.+++....+........+.-.++......|+++.|.+++. .+.+ ..+.+-.++...|.+.++.+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 355566666555554333334455556666777788888887777 3332 123344555566666666655
Q ss_pred HHHHHHHHhhc--CCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHH
Q 006246 381 AIELFFKMQRE--KMRPDRIT----FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 381 A~~l~~~m~~~--g~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
|..++.+.... .-.+.... +.-+...-.+.|+-++|...++++.+ -..+|..+...+|.+|++. +.+.|+.
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 66666555431 01112222 22233333456888888888888887 2467777888888888765 5677777
Q ss_pred HHHhCC
Q 006246 455 VISSMP 460 (654)
Q Consensus 455 ~~~~m~ 460 (654)
+-..++
T Consensus 513 l~k~L~ 518 (652)
T KOG2376|consen 513 LSKKLP 518 (652)
T ss_pred HhhcCC
Confidence 777764
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.72 E-value=3.7e-06 Score=75.74 Aligned_cols=192 Identities=15% Similarity=0.012 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA 342 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 342 (654)
....+.-+|.+.|++..|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+.+.+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566778888888888888888888764 3345577777788888888888888888888765 446678888888899
Q ss_pred HcCCHHHHHHHHhhcCC-C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006246 343 KCGRLDMAWKVFEDMKM-K----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 417 (654)
..|++++|.+.|++... | -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999988765 3 34688888888899999999999999998863 224456777888888899999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 418 QALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 418 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+++..... ..++.++.-..|..-.+.|+-+.|-+.=..+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999998873 4488888877888888888888877654443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.6e-05 Score=74.09 Aligned_cols=304 Identities=11% Similarity=0.040 Sum_probs=173.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHH-HHHHHHH
Q 006246 101 WNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKS-SGIQMYA 179 (654)
Q Consensus 101 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~ 179 (654)
+++.+.-+.+..++..|++++..-.++. +.+...++.+-.+|-...++..|...++++-..- |...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5666667777888888888887776653 2255666777777778888888888888876643 3222221 1122333
Q ss_pred hcCCHHHHHHHHhcCCCC-ChhhHHHHHH--HHHHcCCHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 006246 180 CFGCVNKARQILDDGSKS-DVICWNALID--GYLKCGDIEGAKELFKSTK-DKNTGSYNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
+.+.+.+|.++...|... +...-..-+. .....+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 556667777776666442 1111111111 1234566666666666666 35555556666666666777777777766
Q ss_pred cCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHH-----HHHHHHhcCChhHHHHHHHHHHHcC
Q 006246 256 MNDK----DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC-----VLAACASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 256 ~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (654)
..+- ....||..+. ..+.|+++.|+++..+..+.|++-.+. ++. .+. ...+..-..++...+
T Consensus 170 AlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiD----vrsvgNt~~lh~Sal--- 240 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGID----VRSVGNTLVLHQSAL--- 240 (459)
T ss_pred HHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCc----hhcccchHHHHHHHH---
Confidence 6542 3445554443 334566677777777766666542211 000 000 000000001111000
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 006246 327 ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA 401 (654)
Q Consensus 327 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 401 (654)
+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.-. .+++.+..+-++-++.... -...||.
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHH
Confidence 122333344567889999999999999864 6777665543322 3445555555555555432 3456899
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTY 422 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~ 422 (654)
.++-.||+..-++.|-.++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhh
Confidence 999999999888887777653
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=0.00011 Score=77.55 Aligned_cols=259 Identities=13% Similarity=0.104 Sum_probs=170.8
Q ss_pred CchhHHHHHHH--hcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhC-C--------CCC
Q 006246 63 QDHYVSGTLVK--CHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGV-D--------SKP 131 (654)
Q Consensus 63 ~~~~~~~~Li~--~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p 131 (654)
-|+.+--++++ .|.. -|+++.|.+-.+.+. +-..|..|.+.+.+..+.+-|.-.+..|... | -.|
T Consensus 724 Cd~~TRkaml~FSfyvt--iG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVT--IGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEE--eccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 36667777765 5666 899999988777654 3456999999999999888888777776532 1 123
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 006246 132 NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-DVICWNALIDGYL 210 (654)
Q Consensus 132 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~ 210 (654)
+ .+=..+.-.....|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.-..- =..||..-..-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 222222222457889999999999987743 3445677889999999887654222 2335666666667
Q ss_pred HcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 211 KCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
..++.+.|++.|++...+--.++..|. .++.......+++.++ ..|.....-+-..|+.+.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 788899999999887655444443332 2333334444444443 4455555556667888888888876653
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 291 KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
|-+++...|-.|+.++|-++-++- .|....-.|..+|-..|++.+|..+|.+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334555566777888777765542 244555567888888888888888877654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=3.2e-05 Score=79.66 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=106.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----C--HHHHHHHHHHHH
Q 006246 301 CVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-----E--VFTWNAMIGGLA 373 (654)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~--~~~~~~li~~~~ 373 (654)
.+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++.... + ...|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445666777777777777777655 334556667777777777777777777765541 1 123556677777
Q ss_pred HcCChhHHHHHHHHHhhcCC-CCCHHHH-H--HHHHHHHccCCHHHHHHH--HHHHHHHcCCCCCcchHH--HHHHHHHH
Q 006246 374 MHGRADDAIELFFKMQREKM-RPDRITF-A--CVLSACAHAGMIDRGLQA--LTYMQQMYGIDPEVEHYG--CIVDLLGR 445 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~g~~p~~~~~~--~li~~~~~ 445 (654)
..|++++|+.+|++...... .+..... + .++.-+...|..+.+.++ ....... ........+. ..+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 78888888888887754321 1111111 1 223333334433332222 1111111 1111111122 45556677
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 446 AGYLAEAEEVISSMP--MEP---N------AAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 446 ~g~~~~A~~~~~~m~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
.|+.++|..+++.+. ... . ....-...-++...|+.+.|.+.+..++.+
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888887762 111 1 222223334456888999998888877653
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.7e-05 Score=77.17 Aligned_cols=263 Identities=15% Similarity=0.069 Sum_probs=178.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHH
Q 006246 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAM---ISGFARFGRFEEARKLFNEMNDK---DEITWSAII 268 (654)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 268 (654)
.+.|+.....+...+...|+.++|+..|++...-|+.+..+| .-.+.+.|+.+....+...+-.. ....|-.-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 444666666777777777777777777777665555443332 22345667777666666655433 234455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHH
Q 006246 269 DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLD 348 (654)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 348 (654)
.......+++.|+.+-++.++.+ +-+...|-.-..++...++.++|.-.|..+.... +.+...|.-|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 55666778888888887777653 2233445444566778888888888888777654 457788889999999999988
Q ss_pred HHHHHHhhcCC---CCHHHHHHHH-HHH-HHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 006246 349 MAWKVFEDMKM---KEVFTWNAMI-GGL-AMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTY 422 (654)
Q Consensus 349 ~A~~~~~~m~~---~~~~~~~~li-~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 422 (654)
+|.-.-+.... .+..+.+.+. ..+ -.-.--++|..++++.+. +.|+.. ..+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 87655443221 1222322221 111 111224788888888776 467665 566777889999999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006246 423 MQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN 464 (654)
Q Consensus 423 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 464 (654)
... ..||....+.|.+.+...+.+.+|.+.|... ...|+
T Consensus 464 ~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 464 HLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 876 4799999999999999999999999998876 45554
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00025 Score=73.42 Aligned_cols=416 Identities=11% Similarity=0.059 Sum_probs=245.9
Q ss_pred HHHHHHHhcccccCCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH
Q 006246 67 VSGTLVKCHANSRFSNFELALKVFNSVHK-----PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFK 141 (654)
Q Consensus 67 ~~~~Li~~y~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 141 (654)
.+-..+..|-. +++..-+++.+.+.+ ++..+.- .-.+...|+-++|.+..+.-.... .-+.+.|..+--
T Consensus 10 lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmk--GL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl 83 (700)
T KOG1156|consen 10 LFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMK--GLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhc--cchhhcccchHHHHHHHHHHhccC-cccchhHHHHHH
Confidence 34445555543 444444444444332 3332221 112445688899998888776643 235667776666
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCCHHHH
Q 006246 142 ACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD---GSKSDVICWNALIDGYLKCGDIEGA 218 (654)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 218 (654)
.+....+.++|...+..+++.+ +.|...+.-|.-.=+..|+++.....-.. ..+.....|...+.++.-.|+...|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999998876 45556666555555556666555443333 4556778899999999999999999
Q ss_pred HHHHHhcCC-----CCcchHHHH------HHHHHhcCCHHHHHHHHHhcCCC--C-HhHHHHHHHHHHhcCChHHHHHHH
Q 006246 219 KELFKSTKD-----KNTGSYNAM------ISGFARFGRFEEARKLFNEMNDK--D-EITWSAIIDGYTKDGYYKEALEVF 284 (654)
Q Consensus 219 ~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~ 284 (654)
..+++...+ ++...+... .....+.|..++|.+.+...... | ...-......+.+.+++++|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 998877654 444444332 23446778888888887766543 2 223445567788899999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHH-hc-CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH
Q 006246 285 NEMQRDKIKPRKFVLSCVLAACA-SL-GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362 (654)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 362 (654)
..++.. .||..-|...+..+. +. +..+....+|....+.-........ .=++...-..-.+..-+++..+.++.+
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-LPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-ccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 999887 577777766665544 23 3333333555555432111000000 000000001112222223333333221
Q ss_pred -HHHHHHHHHHHHcCChhH----HHHHHHHHhhcC----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 363 -FTWNAMIGGLAMHGRADD----AIELFFKMQREK----------MRPDRI--TFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 363 -~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g----------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.++..+.+.|-.-...+- +..+...+...| -+|... |+..+...+-+.|+++.|..+++....
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 233333333322221111 111111111111 144444 455667788899999999999998875
Q ss_pred HcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 426 MYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSMP--MEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 426 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
-.|+ ++.|..=..++...|.+++|..++++.. ..||..+-.--..-..+..+.++|.+++.+...-+
T Consensus 400 ---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 400 ---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 3455 5566666788899999999999999873 33566555556666778889999988887776543
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=3.7e-06 Score=82.43 Aligned_cols=211 Identities=16% Similarity=0.104 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC-C----CcchHHHHHHHHHhcCCHHH
Q 006246 174 GIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD-K----NTGSYNAMISGFARFGRFEE 248 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~----~~~~~~~li~~~~~~g~~~~ 248 (654)
+.+.|...|+.+.+..-......|.......+...+...++-+.++.-+++... + +.........++...|++++
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHH
Confidence 444455555555444444443444444433333333222344444444444332 1 11122222234455666676
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 006246 249 ARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKR 324 (654)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~ 324 (654)
|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. ...+..|..+|+++..
T Consensus 121 AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 121 ALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp HHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred HHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 66666554 345555566667777777777777777776542 33444444444322 1235555555555433
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCh-hHHHHHHHHHhh
Q 006246 325 NSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRA-DDAIELFFKMQR 390 (654)
Q Consensus 325 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 390 (654)
. +.+++.+.|.+..++...|++++|.+++++.... |..+...++......|+. +.+.+++.++..
T Consensus 196 ~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 196 K-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp C-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred c-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2 3344445555555555555555555555544332 333444444444444444 334444444443
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=8.8e-05 Score=76.38 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhhHH---HHHHHHHhcCCHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCCHHH
Q 006246 144 SITEADKEGVQVHAHVVKNGLCGDVHVKS---SGIQMYACFGCVNKARQILDDGSKS---DVICWNALIDGYLKCGDIEG 217 (654)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 217 (654)
...|+.++|..+++..++.. +.+...+. .+.......+..+.+.+.++...+. .......+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666555542 22222222 1111112234444444444432111 12223334445666777777
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH--hHHHHHHHHHHhcCChHHHHHHHHHH
Q 006246 218 AKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMNDK-----DE--ITWSAIIDGYTKDGYYKEALEVFNEM 287 (654)
Q Consensus 218 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m 287 (654)
|...+++..+ .+...+..+...|...|++++|...+++..+. +. ..|..+...+...|++++|+.+|++.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777766654 23445566666667777777777776665431 11 23445666777777777777777776
Q ss_pred Hh
Q 006246 288 QR 289 (654)
Q Consensus 288 ~~ 289 (654)
..
T Consensus 213 ~~ 214 (355)
T cd05804 213 IA 214 (355)
T ss_pred hc
Confidence 43
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.1e-05 Score=78.26 Aligned_cols=223 Identities=14% Similarity=0.072 Sum_probs=124.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc------hhHHHHHHH
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD------AVLGTALVD 339 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 339 (654)
.+.++..+..+++.|++-+....... -+..-++....++...|........-....+.|...- ......+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444444445555555555444432 1222222333334444444444443333333321100 011112444
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQ 418 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~ 418 (654)
+|.+.++++.|...|++...+... -....+....++++.......- +.|... -...-...+-+.|++..|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 677778888888888775432110 1112223334444444444333 223321 11122455667888999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 006246 419 ALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEP 496 (654)
Q Consensus 419 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 496 (654)
.+.++++. -+-|...|..-.-+|.+.|.+.+|++=.+.. ...|+ ...|.-=+.++....+++.|...|++.++.+|
T Consensus 380 ~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99888873 3556778888888888999988888766655 33443 44555556666777789999999999999999
Q ss_pred CCC
Q 006246 497 QNR 499 (654)
Q Consensus 497 ~~~ 499 (654)
++.
T Consensus 458 ~~~ 460 (539)
T KOG0548|consen 458 SNA 460 (539)
T ss_pred hhH
Confidence 875
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00059 Score=73.85 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV 440 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li 440 (654)
....|..+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-.+++...+++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999987543 26778999999999999999999999988875 5566654 6799
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 441 DLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
-+|++.+++.|-++++.. ||..-....++-|...|.++.|+-+|..+
T Consensus 1174 ~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999999998877753 56666666777777777777776666544
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00056 Score=69.34 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=72.6
Q ss_pred CCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHH
Q 006246 62 FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--P-NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138 (654)
Q Consensus 62 ~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 138 (654)
+-|..+|+.||.-+.. . ..++++..++++.. | ....|..-|..-.+..+++....+|.+-+..-. +...|..
T Consensus 17 P~di~sw~~lire~qt--~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT--Q-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHcc--C-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 3467788888877665 4 78888888888763 3 345678888888888888888888877765422 3333333
Q ss_pred HHHHHhc-cCCcHH----HHHHHHHHH-HhCCCCCh-hhHHHHHHH---------HHhcCCHHHHHHHHhcC
Q 006246 139 VFKACSI-TEADKE----GVQVHAHVV-KNGLCGDV-HVKSSGIQM---------YACFGCVNKARQILDDG 194 (654)
Q Consensus 139 ll~~~~~-~~~~~~----a~~~~~~~~-~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~~~~~ 194 (654)
-|.-..+ .+.... ..+.++..+ +.|+++.. ..|+..+.. |....+++..++++.++
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 3332211 122222 233344333 34544332 345554443 33334566667777765
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.7e-05 Score=77.72 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=141.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH---H-------HHHHH
Q 006246 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV---F-------TWNAM 368 (654)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~-------~~~~l 368 (654)
...+.++.-+..+++.+.+-+....+.. .+..-++....+|...|....+...-+...+... . ....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456667777788888988888888776 5667777888889999988888777666554321 1 22224
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHHcC
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE-HYGCIVDLLGRAG 447 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g 447 (654)
..+|.+.++++.|+..|++.+.....||.. .+....+++....+...- +.|... -...=...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 456777788999999999977765554432 222333444444433322 234321 1112256678999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC--------------CchHHHHHHHHH
Q 006246 448 YLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR--------------RCDDVAKMRKLM 511 (654)
Q Consensus 448 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--------------~~~~a~~~~~~m 511 (654)
++.+|+..|.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+.. +|+.|.+.+..-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 3345 789999999999999999999999999999999987 777777766654
Q ss_pred Hh
Q 006246 512 KE 513 (654)
Q Consensus 512 ~~ 513 (654)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 43
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=0.00017 Score=75.20 Aligned_cols=344 Identities=13% Similarity=0.154 Sum_probs=219.1
Q ss_pred HHHHHhcccccCCChHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccC
Q 006246 69 GTLVKCHANSRFSNFELALKVFNSVHKPNVF-VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITE 147 (654)
Q Consensus 69 ~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 147 (654)
...+.||.. ..+|++|+.+-+-...|-.. .-.+.+.++...|+-++|-++- . .|..++ +.|+.|.+.|
T Consensus 561 e~aigmy~~--lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~l-aaiqlyika~ 629 (1636)
T KOG3616|consen 561 EEAIGMYQE--LHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDGL-AAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHH--HHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCccH-HHHHHHHHcC
Confidence 455788888 88899999988766555432 2344556666667666665441 1 122232 2345566666
Q ss_pred CcHHHHHHH-------------HHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCC-------------CCChhh
Q 006246 148 ADKEGVQVH-------------AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGS-------------KSDVIC 201 (654)
Q Consensus 148 ~~~~a~~~~-------------~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------~~~~~~ 201 (654)
.+..|.... +++...- .....|...-+.|-+..++++|.+.|+++. +..++.
T Consensus 630 ~p~~a~~~a~n~~~l~~de~il~~ia~al--ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~ 707 (1636)
T KOG3616|consen 630 KPAKAARAALNDEELLADEEILEHIAAAL--IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVK 707 (1636)
T ss_pred CchHHHHhhcCHHHhhccHHHHHHHHHHH--HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhh
Confidence 555443321 1111100 011233444445555566677777776641 111111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhH--HHHHHHHHHhcCChH
Q 006246 202 -WNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEIT--WSAIIDGYTKDGYYK 278 (654)
Q Consensus 202 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 278 (654)
-.....-+.+.|+++.|+..|-+.. ..-.-+.+......+.+|..+++.+.++++.+ |..+...|...|+++
T Consensus 708 lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 708 LEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHH
Confidence 1122223345566666655553321 12223455567788999999999888776553 777788899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
.|.++|-+. ..+.-.+..|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 999998653 235567788999999998877655442 334455666666667788899999999999888
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHH
Q 006246 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC 438 (654)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~ 438 (654)
.|+.. |..|-++|..+..+++..+-.-. --..|...+..-+...|++..|...|-+..+ |.+
T Consensus 852 ~p~~a-----iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~ka 913 (1636)
T KOG3616|consen 852 EPDKA-----IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKA 913 (1636)
T ss_pred CchHH-----HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHH
Confidence 88753 67889999999998887764321 1234666677778888999999888766543 567
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 006246 439 IVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m 459 (654)
-+++|...+.+++|..+-+.-
T Consensus 914 avnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhcc
Confidence 788888889999988887654
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=4e-05 Score=82.57 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHH----HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006246 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYG----CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEAL 471 (654)
Q Consensus 396 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 471 (654)
+...|.......-+.+.+..|.+...+...-...+-+...|+ .....+...|.++.|..-+...+...+..+-.+-
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 344555555555566655555555444432212223334444 2334455567777776666555444444444443
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 472 LGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 472 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+.. .-.|+++++...|++++.+--++
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se 1071 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSE 1071 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccc
Confidence 333 34577899999999998865444
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.00015 Score=84.70 Aligned_cols=316 Identities=11% Similarity=0.032 Sum_probs=174.1
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC----CCC----C--h--hhHHHHHHHHHH
Q 006246 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG----SKS----D--V--ICWNALIDGYLK 211 (654)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~----~--~--~~~~~li~~~~~ 211 (654)
...|+.+.+...+..+.......+..........+...|++++|...++.. ... + . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344555555555544421111222333334444555667777776666542 110 1 0 111122234456
Q ss_pred cCCHHHHHHHHHhcCC--C--Cc----chHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--HhHHHHHHHHHHhc
Q 006246 212 CGDIEGAKELFKSTKD--K--NT----GSYNAMISGFARFGRFEEARKLFNEMND-------KD--EITWSAIIDGYTKD 274 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~--~--~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~ 274 (654)
.|++++|...+++... + +. ...+.+...+...|++++|...+++... +. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 7777777777766543 1 11 2334555566777888888777776642 11 22445556667778
Q ss_pred CChHHHHHHHHHHHhC----CCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCchhHHHHHHHHHHH
Q 006246 275 GYYKEALEVFNEMQRD----KIK--P-RKFVLSCVLAACASLGALDQGIWIHDHVKRN----SICVDAVLGTALVDMYAK 343 (654)
Q Consensus 275 g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~y~~ 343 (654)
|++++|...+++.... +.. + ....+..+...+...|++++|...+...... +.......+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 8888888877776442 211 1 1122333444556668888888777776542 111123344445667777
Q ss_pred cCCHHHHHHHHhhcCC----C-CHHHHH-----HHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHcc
Q 006246 344 CGRLDMAWKVFEDMKM----K-EVFTWN-----AMIGGLAMHGRADDAIELFFKMQREKMRPDRI---TFACVLSACAHA 410 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~----~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~ 410 (654)
.|+.++|.+.+++... . ....+. ..+..+...|+.+.|..++.+........... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 8888888777766532 1 111111 12234455778888888876655422111111 134556667778
Q ss_pred CCHHHHHHHHHHHHHH---cCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 411 GMIDRGLQALTYMQQM---YGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 411 g~~~~a~~~~~~~~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
|+.++|..+++..... .|..++ ..+...+..++.+.|+.++|.+.+.+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888776552 133222 335566677788888888888888766
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.0028 Score=74.25 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHHHHhHhCCCC--C-C----cccHHHHHHHHh
Q 006246 116 RVISLYSEMVGVDSK--P-N----KFTYPTVFKACS 144 (654)
Q Consensus 116 ~A~~~~~~m~~~g~~--p-~----~~t~~~ll~~~~ 144 (654)
.+.+.++++...|+- | + .+.|+.++..+.
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l 328 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFL 328 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHH
Confidence 345666666666541 1 1 355777766654
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=4.3e-06 Score=84.99 Aligned_cols=191 Identities=11% Similarity=0.050 Sum_probs=144.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
+.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+++..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888887765 45677888888888888887778877777665 36778888888899999888999
Q ss_pred HHHHHHhhcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHH
Q 006246 383 ELFFKMQREKMR--------PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 383 ~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
+.+++-+....+ ++..+-.. ..+.....+....++|-.+....+..+|..++.+|.-+|.-.|.+++|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887654211 00000000 11222233445556666666555766888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 455 VISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 455 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|+.+ ..+| |...||-|+..+....+.++|+.+|++++++.|...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 99987 5666 688999999999999999999999999999999986
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.2e-07 Score=58.04 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=21.4
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 428 GIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 428 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3.5e-07 Score=57.09 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 326 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777764
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=1.8e-05 Score=82.65 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=127.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhc
Q 006246 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARF 243 (654)
Q Consensus 166 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 243 (654)
|--.....+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+-.+ ||+..|..+.+.....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33334445566666666666666666653 2355555566666655555555444333 3444555555554444
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 006246 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVK 323 (654)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (654)
.-+++|+++++....+--..|+. ....+++++++.+.| +.-.
T Consensus 471 s~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hl-----------------------------------e~sl 512 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHL-----------------------------------ERSL 512 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHH-----------------------------------HHHh
Confidence 44555555554433221111111 111234444444444 4433
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHH
Q 006246 324 RNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITF 400 (654)
Q Consensus 324 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 400 (654)
+.+ +....+|-.+..++.++++++.|.+.|..... | +..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...|
T Consensus 513 ~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iW 590 (777)
T KOG1128|consen 513 EIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIW 590 (777)
T ss_pred hcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeee
Confidence 332 22344555566666667777777777765543 3 45677777777777777777777777777765 3344455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
...+....+.|.+++|++.+.++........|..+-..++....
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 55555666777777777777776654333335555544444433
No 107
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00019 Score=71.38 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF-VLSCVLAACASLG-ALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
+..+-..+...++.++|+.++.++++. .|+.. .|..--.++...| .+++++..+..+.+.. +.+..+|+...-.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 333444455667777888887777764 34333 3333334445555 5677777777777765 33445566555555
Q ss_pred HHcCCH--HHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc---CC-
Q 006246 342 AKCGRL--DMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA---GM- 412 (654)
Q Consensus 342 ~~~g~~--~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---g~- 412 (654)
.+.|+. +++..+++++.+ +|..+|+...-.+...|+++++++.+.++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 556652 567777776664 47788998888888889999999999999887654 555666555555444 22
Q ss_pred ---HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 006246 413 ---IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA----GYLAEAEEVISSM-PMEP-NAAVWEALLGACRKH 478 (654)
Q Consensus 413 ---~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 478 (654)
.++..++..++... .+-+...|+.+..+|... ++..+|.+++.+. ...| +......|+..|...
T Consensus 196 ~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 24566777666652 344566788888777763 4456788888775 3333 577788888888753
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0066 Score=66.20 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=144.5
Q ss_pred CCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 006246 182 GCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK-- 259 (654)
Q Consensus 182 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 259 (654)
+.++.|.+.-++... +..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+....++
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 334444444444333 345777777777778887777766433 45666777788888888888877766655432
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
....=+.+|-+|++.++..+..+++ .-||......+..-|...+.++.|+-+|..+. -|..|..
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~ 1228 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLAS 1228 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHH
Confidence 2333456777788877776655543 24677777777777777777777777766442 3445666
Q ss_pred HHHHcCCHHHHHHHHhhcCC------------------------C----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 340 MYAKCGRLDMAWKVFEDMKM------------------------K----EVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~------------------------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
.+...|+++.|...-++... - ...-..-++.-|-..|-+++.+.+++..+.
T Consensus 1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG- 1307 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG- 1307 (1666)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc-
Confidence 66666666666544333321 0 112344566666777777777776665432
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCC------CCcchHHHHHHHHHHcCCHHHHHH
Q 006246 392 KMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGID------PEVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 392 g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~------p~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
+.- ..-.|+-|.-.|++- ++++..+.++..-...+++ -....|+-++-.|.+-..++.|.-
T Consensus 1308 -LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1308 -LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 221 122344444444443 3444444444333322221 124467777777777777776653
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=3.1e-05 Score=74.51 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 006246 438 CIVDLLGRAGYLAEAEEVISSM----PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496 (654)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 496 (654)
.+...|.+.|++++|+..+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999999876 3233 367899999999999999999998888776555
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.00017 Score=78.01 Aligned_cols=410 Identities=13% Similarity=0.062 Sum_probs=204.6
Q ss_pred ChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 006246 82 NFELALKVFNSVHKPNV---FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAH 158 (654)
Q Consensus 82 ~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 158 (654)
+...|...|=+..+.|+ ..|..|...|...-+...|...|++..+.. ..|..........+++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 35555555544443332 346666666655555566666666665532 22444555555666666666666665222
Q ss_pred HHHhCC-CCChhhHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchH-
Q 006246 159 VVKNGL-CGDVHVKSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSY- 233 (654)
Q Consensus 159 ~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 233 (654)
.-+... ..-..-|..+--.|.+.++...|..-|+.. .+.|...|..+..+|...|++..|+++|.+...-++..+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 211110 000111222333355666666666666543 444555666666666666666666666655543222211
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHhcCCC----------CHhHHHHHHHHHHhcCChHHHHHHHHHH-------HhCCC--
Q 006246 234 --NAMISGFARFGRFEEARKLFNEMNDK----------DEITWSAIIDGYTKDGYYKEALEVFNEM-------QRDKI-- 292 (654)
Q Consensus 234 --~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~-- 292 (654)
--...+-+..|++.+|...+..+... -..++-.+...+.-.|-..+|...++.- .....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 11222334455555555555544321 0112222222222222222222222221 11111
Q ss_pred ------------------CCC---cchHHHHHHHHHhcCCh---h---HHHHHHHHHHHcCCCCchhHHHHHHHHHHH--
Q 006246 293 ------------------KPR---KFVLSCVLAACASLGAL---D---QGIWIHDHVKRNSICVDAVLGTALVDMYAK-- 343 (654)
Q Consensus 293 ------------------~p~---~~t~~~ll~~~~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 343 (654)
.|+ ......+..-....+.. + .|.+.+-. ...+..+...|..|+.-|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 122 11111111112222222 1 01111111 11111223344344433332
Q ss_pred --cCC----HHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHH
Q 006246 344 --CGR----LDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414 (654)
Q Consensus 344 --~g~----~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 414 (654)
+|. ...|...+.+..+ .+...||.|... ...|++.-|...|-+-.... +-+..+|..+.-.|....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 222 3356666665543 577899988766 55677888888777766553 346778888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhCChHHHHH
Q 006246 415 RGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-------PMEPNAAVWEALLGACRKHGEVEFGER 486 (654)
Q Consensus 415 ~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 486 (654)
.|...|...+. +.|+ ...|--..-.....|+.-++..+|..- +--|+..-|-.-......+|+.++-+.
T Consensus 868 ~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 868 HAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 99999998875 3443 444544444455678888888888752 233566666555555666666665444
Q ss_pred H----------HHHHHhcCCCCC
Q 006246 487 L----------GKILLEMEPQNR 499 (654)
Q Consensus 487 ~----------~~~~~~~~p~~~ 499 (654)
. .++.+.-.|+..
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchh
Confidence 3 344444566654
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=1.9e-05 Score=69.07 Aligned_cols=114 Identities=7% Similarity=-0.017 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM 461 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 461 (654)
.+|++.++. .|+. +..+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 4443 445666777888888888888887752 2335667788888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCch
Q 006246 462 EP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCD 502 (654)
Q Consensus 462 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 502 (654)
.| +...|..+..++...|+.++|+..+++++++.|+++.+-
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 34 678888888889999999999999999999999887443
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.0053 Score=62.57 Aligned_cols=394 Identities=12% Similarity=0.160 Sum_probs=237.1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHH
Q 006246 96 PNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174 (654)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 174 (654)
-|+.+|+.||.-+... -++++.+.++++... -| ....|..-+..-....+++..+.+|.+.+..-+. ...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHH
Confidence 4889999999876555 899999999999864 44 4557777888888899999999999998876544 4444444
Q ss_pred HHHHH-hcCCHHHHHH----HHh----c--CCCCChhhHHHHHHH---------HHHcCCHHHHHHHHHhcCCC------
Q 006246 175 IQMYA-CFGCVNKARQ----ILD----D--GSKSDVICWNALIDG---------YLKCGDIEGAKELFKSTKDK------ 228 (654)
Q Consensus 175 i~~y~-~~g~~~~A~~----~~~----~--~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~------ 228 (654)
++--- ..|+...+++ .|+ + |...+-..|+..+.- |..+.+.+...++|+++..-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 43221 1233333221 121 1 344455667766653 45566777888888888752
Q ss_pred ----CcchHHHHHHHH-------HhcCCHHHHHHHHHhcCC------CC---------------HhHHHHHHHHHHhcCC
Q 006246 229 ----NTGSYNAMISGF-------ARFGRFEEARKLFNEMND------KD---------------EITWSAIIDGYTKDGY 276 (654)
Q Consensus 229 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~~------~~---------------~~~~~~li~~~~~~g~ 276 (654)
|-..|..=|+.. -+...+-.|.++++++.. ++ +..|-.+|.-=-.++.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222222222211 122344556666655431 11 1124444442222211
Q ss_pred h--------HHHHHHHHHH-HhCCCCCCcchH-HHHH----HHHHhcCC-------hhHHHHHHHHHHHcCCCCchhHHH
Q 006246 277 Y--------KEALEVFNEM-QRDKIKPRKFVL-SCVL----AACASLGA-------LDQGIWIHDHVKRNSICVDAVLGT 335 (654)
Q Consensus 277 ~--------~~A~~~~~~m-~~~g~~p~~~t~-~~ll----~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~ 335 (654)
- ....-.+++. .-.+..|+.... ...+ ..+...|+ -+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0111122221 122333332211 1111 11222333 345555666555433333444444
Q ss_pred HHHHHHHHcC---CHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHH
Q 006246 336 ALVDMYAKCG---RLDMAWKVFEDMKM----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSAC 407 (654)
Q Consensus 336 ~li~~y~~~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~ 407 (654)
.+.+-=-..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +...+.+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3332211111 13334444444433 233567778887788888999999999999988888 555667777655
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCChH
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP---MEPN--AAVWEALLGACRKHGEVE 482 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~ 482 (654)
+ .++.+-|.++|+.-.+.+|-. ..--.+.++-+...++-..|..+|++.- ..|| ..+|..++.--..-|++.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5 578899999999988865543 3445678889999999999999999872 3443 689999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 006246 483 FGERLGKILLEMEPQ 497 (654)
Q Consensus 483 ~a~~~~~~~~~~~p~ 497 (654)
.+.++-++....-|.
T Consensus 490 si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHHHHHHHhcch
Confidence 999999998887773
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=7.7e-05 Score=69.02 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=113.3
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006246 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGL 417 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 417 (654)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655443332221 01223566778888888877764 447778888888999999999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 418 QALTYMQQMYGIDPEVEHYGCIVDLL-GRAGY--LAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 418 ~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
..|++..+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988863 233566777888764 67777 59999999987 3445 68889999999999999999999999999
Q ss_pred hcCCCCC
Q 006246 493 EMEPQNR 499 (654)
Q Consensus 493 ~~~p~~~ 499 (654)
++.|.+.
T Consensus 172 ~l~~~~~ 178 (198)
T PRK10370 172 DLNSPRV 178 (198)
T ss_pred hhCCCCc
Confidence 9988876
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=8.3e-05 Score=82.92 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=128.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-C-HHHHHHHH
Q 006246 296 KFVLSCVLAACASLGALDQGIWIHDHVKRN-SICV---DAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-E-VFTWNAMI 369 (654)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~li 369 (654)
...|-..+....+.+.+++|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|+++.+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555555556666666666666666542 1111 1345666666666666667777777777652 3 34567777
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHHc
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE---VEHYGCIVDLLGRA 446 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~---~~~~~~li~~~~~~ 446 (654)
..|.+.+++++|.++|+.|.+. +.-....|..++..+.+..+-+.|..++.++.+- -|. .....-.+++-.+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhc
Confidence 7777777777788887777764 3334556777777777777777777777777653 333 33344555666677
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 447 GYLAEAEEVISSM--PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 447 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
|+.+.+..+|+.. ..+.....|+.+++.-.+||+.+.++.+|++++++.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888788766 223356778888888888888888888888887753
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.8e-05 Score=80.62 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHHH
Q 006246 378 ADDAIELFFKMQ-REKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEEV 455 (654)
Q Consensus 378 ~~~A~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 455 (654)
.....++|-++. +.+.++|......|.-.|.-.|.+++|...|+.+.. ++| |...||.|.-.++...+.+||+..
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 345555665554 345446666666677678888999999999999986 355 467899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 456 ISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 456 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
|++. .++|. +.++..|.-+|...|.+++|.+.+-.++.+.+..
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9988 67887 6788899999999999999999999888876653
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.22 E-value=0.0002 Score=79.99 Aligned_cols=217 Identities=16% Similarity=0.149 Sum_probs=156.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-HhHHHH
Q 006246 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKDK--------NTGSYNAMISGFARFGRFEEARKLFNEMNDK-D-EITWSA 266 (654)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~ 266 (654)
.+...|-..+.-..+.++.++|.++.++.... -...|.++++.-..-|.-+...++|+++.+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34556666666667777777777777766541 2346777777777777777888888887653 3 456788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcC
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCG 345 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g 345 (654)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++.+.-.. -...+..-.+.+-.++|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 888888888888888888888775 3345567777788888888888888888888775322 13445556677778899
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHccCCHH
Q 006246 346 RLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI--TFACVLSACAHAGMID 414 (654)
Q Consensus 346 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~ 414 (654)
+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..-...|+-+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999998775 356789999999999999999999999999988877443 4444444444444433
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=6.6e-05 Score=78.58 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=163.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChh
Q 006246 234 NAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALD 313 (654)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (654)
..+...+...|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+. +||...|..+.....+..-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 56777888999999999999986 56888899999999999999998888773 788888888888877777778
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 314 QGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
+|.++.++.... .-..+.......++++++.+.|+.-..- -..+|-.+..+..+.++++.|.+.|..-..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888777765432 1112222233468899999888865543 457888888889999999999999998877
Q ss_pred cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 391 EKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 391 ~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
. .||.. .|+++-.+|.+.++-.+|...+.+..+ +. .-+...|-..+-...+.|.+++|.+.+.++
T Consensus 548 L--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 548 L--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred c--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 4 56654 799999999999999999999999887 45 444556667777788999999999998876
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.00032 Score=77.01 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR-ITFACVLS 405 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 405 (654)
++..+..|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+. .....+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 344444444455555555555555554443 2 3334444444555555555555555555443 2222 23333334
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
++.+.|++++|..+|+++... ..-+...+..+..++...|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555555431 1112334444444555555555555555444
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.18 E-value=0.0034 Score=60.25 Aligned_cols=298 Identities=13% Similarity=0.058 Sum_probs=152.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHH---HHHHHH
Q 006246 136 YPTVFKACSITEADKEGVQVHAHVVKNGLCGDV-HVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNAL---IDGYLK 211 (654)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~ 211 (654)
-.-+-+.+...|.+..|..-+..+++. .|+. .++-.-...|...|+...|..-|++....-+.-+.+- ...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 334445566667777777666666543 2222 2333344568888888888877777633322223332 345789
Q ss_pred cCCHHHHHHHHHhcCCCCcc------------------hHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 006246 212 CGDIEGAKELFKSTKDKNTG------------------SYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDG 270 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~~~~~------------------~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 270 (654)
.|.++.|..-|+...+.++. .....+..+...|+...|+.....+.+ .|+..|-.-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 99999999999998864321 112233344555666666666666554 255556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 006246 271 YTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350 (654)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 350 (654)
|...|++..|+.-++...+.. .-+..++--+-..+...|+.+.++....+-++.+ ||-..+-. .|-+ +.+.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~---~YKk---lkKv 269 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFP---FYKK---LKKV 269 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHH---HHHH---HHHH
Confidence 677777766666555554432 2233344444455556666666665555555432 33221111 0111 1111
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 351 WKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT---FACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 351 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
.+.++.| ......+++.++++-.+...+.......++ +..+-.++...|++.+|++...++..
T Consensus 270 ~K~les~------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-- 335 (504)
T KOG0624|consen 270 VKSLESA------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-- 335 (504)
T ss_pred HHHHHHH------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--
Confidence 1111111 112334445555555555444322211222 22223344445556666555555543
Q ss_pred CCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 428 GIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 428 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.|+ +.++.--.++|.-...+++|+.-|+..
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3343 445555555555555556665555554
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.00033 Score=67.29 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKM-RP-DRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+...|.+.|++++|+..|++..+... .| ....+..+..++.+.|+.++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555555566655555554311 11 123445555555555555555555555544
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.002 Score=64.95 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=48.2
Q ss_pred hcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChhHHHH
Q 006246 242 RFGRFEEARKLFNEMND--K-DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK-FVLSCVLAACASLGALDQGIW 317 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~ 317 (654)
..|++++|+..++.+.. | |+..+......+...++..+|.+.++++... .|+. .....+..++.+.|++.+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555444432 2 3334444444555555555555555555443 2332 222233344444555555544
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 006246 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351 (654)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 351 (654)
++....... +.|+..|..|..+|...|+..+|.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 444444332 334444555555555555444443
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=0.00012 Score=63.90 Aligned_cols=119 Identities=12% Similarity=-0.119 Sum_probs=78.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC
Q 006246 353 VFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE 432 (654)
Q Consensus 353 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~ 432 (654)
+|++..+.++..+..+...+.+.|++++|...|++..... +.+...+..+..++...|++++|...|+...+ --+.+
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~ 91 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASH 91 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCC
Confidence 4444444444445556667777788888888887777653 23556777777777788888888888887775 23345
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGA 474 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 474 (654)
...+..+..++.+.|++++|++.|++. ...|+ +..|.....+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 667777777788888888888887776 34453 4444444333
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.7e-06 Score=52.77 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 133 (654)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00011 Score=63.55 Aligned_cols=113 Identities=10% Similarity=0.042 Sum_probs=89.5
Q ss_pred HHHHHhhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 006246 384 LFFKMQREKMRPDR-ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM 461 (654)
Q Consensus 384 l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 461 (654)
+|++.... .|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 4433 44666777788899999999999988773 2445677888889999999999999998877 33
Q ss_pred CC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCC
Q 006246 462 EP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500 (654)
Q Consensus 462 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 500 (654)
.| +...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 6788888999999999999999999999999999863
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.00063 Score=62.96 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=68.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH-HHcCC--hhHHH
Q 006246 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGL-AMHGR--ADDAI 382 (654)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~-~~~g~--~~~A~ 382 (654)
.++.+++...+....+.+ +.+...|..|...|...|++++|...|++... .+...+..+..++ .+.|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555555444 34556666666666666666666666665543 2555555555543 45455 36666
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc
Q 006246 383 ELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE 434 (654)
Q Consensus 383 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~ 434 (654)
+++++..+.+.. +...+..+...+...|++++|+..|+++.+ ..+|+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD--LNSPRVN 179 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcc
Confidence 666666665321 444555555666666666666666666665 3344443
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5e-06 Score=52.65 Aligned_cols=35 Identities=40% Similarity=0.733 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDR 397 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 397 (654)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988873
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0017 Score=60.90 Aligned_cols=280 Identities=13% Similarity=0.072 Sum_probs=193.3
Q ss_pred HHHHHHhcccccCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHH-HHHH
Q 006246 68 SGTLVKCHANSRFSNFELALKVFNSVHKP---NVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV-FKAC 143 (654)
Q Consensus 68 ~~~Li~~y~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~ 143 (654)
+++.+..+.+ -.++++|++++..-.++ +....+.|..+|-...++..|-+.|+++-.. .|...-|..- ...+
T Consensus 13 ftaviy~lI~--d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIR--DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHH--HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3444444455 67899999998766543 5556777788888999999999999999775 4555555432 2335
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhhHHHHHH----HHHhcCCHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCCHHHH
Q 006246 144 SITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQ----MYACFGCVNKARQILDDGS-KSDVICWNALIDGYLKCGDIEGA 218 (654)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 218 (654)
-+.+.+..|..+...|... + ...+..+. .....+++..++.+++..+ +.+..+.+...-...+.|+++.|
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 5677888888888877532 2 22222221 2335788999999999987 46677777776677899999999
Q ss_pred HHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------------CH---------------h
Q 006246 219 KELFKSTKD----KNTGSYNAMISGFARFGRFEEARKLFNEMNDK-----------------DE---------------I 262 (654)
Q Consensus 219 ~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~---------------~ 262 (654)
++-|+...+ .....||.-+..| +.|+++.|++...++.++ |+ .
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999998876 3445677666555 558999999998887642 11 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRD-KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
.+|.-...+.+.|+++.|.+.+-.|.-. .-..|++|+..+.-. -..+++..+.+-+..+...+. ....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 3444555677889999998888887532 234567777654321 233556777777777777654 4456777788889
Q ss_pred HHcCCHHHHHHHHhhcCC
Q 006246 342 AKCGRLDMAWKVFEDMKM 359 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~ 359 (654)
+|..-++.|-.++.+-..
T Consensus 321 CKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAH 338 (459)
T ss_pred hhhHHHhHHHHHHhhCcc
Confidence 998888888888776544
No 128
>PLN02789 farnesyltranstransferase
Probab=98.08 E-value=0.001 Score=66.34 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc---CCh----HHHHH
Q 006246 216 EGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND---KDEITWSAIIDGYTKD---GYY----KEALE 282 (654)
Q Consensus 216 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~----~~A~~ 282 (654)
++++.+++.+.+ .|..+|+.....+.+.|++++|++.++++.+ .|..+|+.....+.+. |.. +++++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 344555544443 2334455555555555555566655555543 2444555544444333 111 34555
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 006246 283 VFNEMQRDKIKPRKFVLSCVLAACAS----LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK 343 (654)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 343 (654)
...+++... +-|...|..+...+.. .+...++......+.+.+ ..+......|++.|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 554555442 2344455555544444 223344555555544432 2234455556666653
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0042 Score=57.73 Aligned_cols=176 Identities=17% Similarity=0.079 Sum_probs=123.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC
Q 006246 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396 (654)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 396 (654)
++.+.+.......+......-...|.+.|++++|++.......-+....| ...+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 34444444444444344444455688889999999988874433333333 34456777888999999999873 26
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 006246 397 RITFACVLSACAH----AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM--PMEPNAAVWEA 470 (654)
Q Consensus 397 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 470 (654)
..|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-+..+....|++++|..++++. +...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 6777777776653 4568889999999987 46788888888888888899999999999887 33346667666
Q ss_pred HHHHHHHhCC-hHHHHHHHHHHHhcCCCCC
Q 006246 471 LLGACRKHGE-VEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 471 ll~~~~~~g~-~~~a~~~~~~~~~~~p~~~ 499 (654)
++..-...|. .+--.+...++....|+.+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6655555554 4556777888888888887
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.0023 Score=71.22 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=109.5
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 006246 195 SKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNT-GSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGY 271 (654)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 271 (654)
.+.+...|..|+..|...+++++|.++.+...+ |+. ..|-.+...+.+.++..++..+ .++..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 344566777777777788888888888776654 322 2333333355555554444433 344444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 006246 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW 351 (654)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 351 (654)
....++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 4455554444444455443 2334467777788888888888888888888877 56778888888888888 888888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 352 KVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 352 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
+++.+... .|...+++.++.+++.++...
T Consensus 170 ~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 170 TYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHH-----------HHHhhhcchHHHHHHHHHHhc
Confidence 87766533 256666777777777777764
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0015 Score=65.95 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 006246 344 CGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD-RITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
.|.+++|+..++.+.. .|+..+......+...++..+|.+.++++... .|+ ......+..++.+.|+..+|+.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 4455555555544432 24444444455555555555555555555543 333 23333444455555555555555
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHH
Q 006246 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 420 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 453 (654)
++.... ..+-|+..|..|..+|...|+..+|.
T Consensus 397 L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 397 LNRYLF--NDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHhh--cCCCCchHHHHHHHHHHHhCchHHHH
Confidence 555443 33444445555555555555554444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0011 Score=61.00 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKMK-----EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 408 (654)
+.-++-+...+|+.+.|..+++.+..+ -+.-..+| -+-..|++++|+++|+..++.. +-|.+++---+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 334444555667777777777765542 12222222 2445788999999999999876 446777776666666
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC---ChHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHG---EVEF 483 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~ 483 (654)
..|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+...| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77877789998888887 47889999999999999999999999999998 2345 5666666666655544 7889
Q ss_pred HHHHHHHHHhcCCCCC
Q 006246 484 GERLGKILLEMEPQNR 499 (654)
Q Consensus 484 a~~~~~~~~~~~p~~~ 499 (654)
|.+.|.+++++.|.+.
T Consensus 210 arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHhChHhH
Confidence 9999999999999654
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00047 Score=63.87 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 006246 335 TALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 411 (654)
..+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344555555666666555555332 244455556666777777777777777776543 556667777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhCChHHHHHHHH
Q 006246 412 MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM--EPNAAVWEALLGACRKHGEVEFGERLGK 489 (654)
Q Consensus 412 ~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 489 (654)
+.++|..-|.+..+-. .-+...++.|.-.|.-.|+++.|..++.+.-. ..|..+-..|.-.....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777776632 22344566666667777777777777766521 1256666666666777777777766554
Q ss_pred H
Q 006246 490 I 490 (654)
Q Consensus 490 ~ 490 (654)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.0021 Score=59.61 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC
Q 006246 300 SCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHG 376 (654)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 376 (654)
...-.++...|+-+....+....... .+.|..+.+.++....+.|++..|...|.+... +|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44445555666666666555554322 244666777788888999999999999998875 47889999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
+.++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++..... .-.-|..+-..+.-+.+..|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999998852 22556788888888899999999999998876 33346777888889999999999999887
Q ss_pred HhC
Q 006246 457 SSM 459 (654)
Q Consensus 457 ~~m 459 (654)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.2e-05 Score=50.49 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 006246 98 VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKP 131 (654)
Q Consensus 98 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 131 (654)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999988887
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0018 Score=72.02 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=81.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 006246 229 NTGSYNAMISGFARFGRFEEARKLFNEMND--KD-EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA 305 (654)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (654)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 445566677777677777777776665443 22 22333333355555555554444 2221 1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
.....++.....++..+...+ .+...+..|..+|-+.|+.++|.++++++.+ .|+.+.|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 112222222223333333322 2333556677777777888888888777765 3667777777777777 777787
Q ss_pred HHHHHHhhc
Q 006246 383 ELFFKMQRE 391 (654)
Q Consensus 383 ~l~~~m~~~ 391 (654)
+++.+....
T Consensus 170 ~m~~KAV~~ 178 (906)
T PRK14720 170 TYLKKAIYR 178 (906)
T ss_pred HHHHHHHHH
Confidence 777776653
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00034 Score=71.08 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667777889999999999888777667778888888888889999999888652 2355555555666888899
Q ss_pred HHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006246 413 IDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSMPMEP 463 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 463 (654)
.+.|..+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|.-|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998886 3554 5589999999999999999999999887543
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2e-05 Score=49.45 Aligned_cols=33 Identities=33% Similarity=0.610 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP 294 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (654)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00034 Score=71.06 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhH
Q 006246 235 AMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQ 314 (654)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (654)
+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..+.. +-+...+..-...|.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 444555566778888888888887776677777888888888888888888887652 2233344444445667777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 315 GIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
|.++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777654 3345577777777777777777777777666
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0059 Score=56.79 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred HHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH----cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM----HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMID 414 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 414 (654)
.+.|..+.+-|.+.+++|.+- +-.+.+.|..++.+ .++..+|.-+|++|.++ ..|+..+.+...-++...|+++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 344455566666666666553 23344444444333 23456666666666553 4566666666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCH
Q 006246 415 RGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449 (654)
Q Consensus 415 ~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 449 (654)
+|..+++....+ -..++++...+|-.---.|..
T Consensus 225 eAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 225 EAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 666666666553 223334444444433344443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.00098 Score=58.45 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC--cchHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPD---RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE--VEHYGCI 439 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~--~~~~~~l 439 (654)
|..++..+ ..++...+...++++.+... .+ ......+...+...|++++|...|+.+... ...|. ....-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 47777888888888877532 12 123344556777888888888888888874 32222 1234456
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 440 VDLLGRAGYLAEAEEVISSMPM-EPNAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
..++...|++++|+..++..+. ...+..+...+..+...|+.++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7778889999999999887642 2346677788888999999999999888763
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.097 Score=57.04 Aligned_cols=212 Identities=12% Similarity=0.041 Sum_probs=140.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCchHHH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNEPWRVI 118 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 118 (654)
..+++..|.+..+.+++.. |+ ..|...+.++...|.|+.++|..+++... ..|..+...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4677888888888888764 33 35666667776666999999998888765 346778888888999999999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC----------HHHHH
Q 006246 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGC----------VNKAR 188 (654)
Q Consensus 119 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~ 188 (654)
.+|++..+. -|+......++.++.+.+++.+-.++--++-+ .++.+++.+=++++.+...-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998865 57777778888889988887766665555554 344555555556666543321 23355
Q ss_pred HHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHh-c----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006246 189 QILDDGSKSD-----VICWNALIDGYLKCGDIEGAKELFKS-T----KDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258 (654)
Q Consensus 189 ~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (654)
++++.+...+ ..-.---...+-..|.+++|+.++.. . ...+...-+--+..+...+++.+-.++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555553333 11111122334567888888888732 2 223444445667777777887776666655554
Q ss_pred C
Q 006246 259 K 259 (654)
Q Consensus 259 ~ 259 (654)
+
T Consensus 255 k 255 (932)
T KOG2053|consen 255 K 255 (932)
T ss_pred h
Confidence 3
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.76 E-value=0.0026 Score=69.98 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=74.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF-VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (654)
++..+-.|.....+.|.+++|..+++...+. .||.. ....+..++.+.+++++|....+...... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 3555666666666666666666666666654 44332 34444555666666666666666666554 23444555555
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 339 DMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
.++.+.|++++|..+|+++..+ +..+|..+..++...|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666665532 2445555556666666666666666665543
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.062 Score=53.50 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDR 415 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 415 (654)
..+.-+...|....|.++-.+..-++-..|-..+.+|+..++|++-.++... +-.++-|..++.+|.+.|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3355556678888999998888888888999999999999999877765432 1234778888999999999998
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 479 (654)
|..+..++ .+..-+.+|.++|++.+|.+.--+.+ |...+..+..-|..+.
T Consensus 256 A~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 256 ASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGNN 305 (319)
T ss_pred HHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCCC
Confidence 88877652 23566788899999999988766654 5555555555444433
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00029 Score=66.49 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=74.4
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEF 483 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 483 (654)
..+.+++.+|+..|...++ +.|. ...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777777777777765 3443 444555567788888888888777765 45564 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHH
Q 006246 484 GERLGKILLEMEPQNRRCDDVAKMRK 509 (654)
Q Consensus 484 a~~~~~~~~~~~p~~~~~~~a~~~~~ 509 (654)
|++.|+++++++|++..|....++-+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 99999999999999875555554433
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.1e-05 Score=46.35 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDS 129 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 129 (654)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.00077 Score=56.67 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN----AAVWEALL 472 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 472 (654)
++..+...+...|++++|...|..+.+.++-.| ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666777777777777665321111 1234555667777777777777777765 22222 45677777
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..+...|+.+.|...++++++..|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 788888888888888888888888764
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=4.9e-05 Score=46.45 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCC
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKM 393 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 393 (654)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777663
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0032 Score=55.16 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc--hhHHHHH
Q 006246 264 WSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRK----FVLSCVLAACASLGALDQGIWIHDHVKRNSICVD--AVLGTAL 337 (654)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 337 (654)
|..++..+ ..++...+...++.+.... |+. ...-.+...+...|++++|...|+.+......++ ....-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34444444 3667777777777776652 222 1122233455666777777777777776552222 1233345
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006246 338 VDMYAKCGRLDMAWKVFEDMKMK--EVFTWNAMIGGLAMHGRADDAIELFFKM 388 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m 388 (654)
...+...|++++|+..++....+ ....+......|...|+.++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66667777777777777665443 3345555666677777777777777653
No 150
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.61 E-value=0.0013 Score=56.82 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 006246 334 GTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHA 410 (654)
Q Consensus 334 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 410 (654)
...+...|.+.|++++|...|+.+.. .+...|..+...|...|++++|...|++..+.+ +.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 33444445555555555555544432 234455555555555555555555555554432 22334444445555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006246 411 GMIDRGLQALTYMQQ 425 (654)
Q Consensus 411 g~~~~a~~~~~~~~~ 425 (654)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0011 Score=52.61 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=43.4
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHH
Q 006246 406 ACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEF 483 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~ 483 (654)
.+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. .. +.+..+|..+...+...|+.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 333444444444444444331 1111233444444455555555555555443 11 1233455566666666666666
Q ss_pred HHHHHHHHHhcCC
Q 006246 484 GERLGKILLEMEP 496 (654)
Q Consensus 484 a~~~~~~~~~~~p 496 (654)
|...++++++..|
T Consensus 87 a~~~~~~~~~~~~ 99 (100)
T cd00189 87 ALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHccCC
Confidence 6666666666555
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00036 Score=51.44 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 439 IVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+...+.+.|++++|++.|++. ...| +...|..+...+...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999988 4445 688999999999999999999999999999999874
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0031 Score=62.01 Aligned_cols=134 Identities=13% Similarity=0.200 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA-CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998643 2234445544444 333567777999999999864 456677899999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEPN----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.--.+.|+++...++.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 22233 35999999999999999999999999999988854
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.14 Score=54.14 Aligned_cols=353 Identities=15% Similarity=0.173 Sum_probs=168.0
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHh-CCCCCCcc--cHHH--H--HHHHhccCCcHHHHHHH
Q 006246 84 ELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVG-VDSKPNKF--TYPT--V--FKACSITEADKEGVQVH 156 (654)
Q Consensus 84 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~--t~~~--l--l~~~~~~~~~~~a~~~~ 156 (654)
++|.+..+. .|....|..+...-...-.++-|...|-+... .|++.-.. |..+ + ...-+--|++++|+.++
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~y 757 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLY 757 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhh
Confidence 444444443 34455677776655555555556555554432 12211000 0000 0 01112346677777766
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 006246 157 AHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSD-----VICWNALIDGYLKCGDIEGAKELFKSTKDKNTG 231 (654)
Q Consensus 157 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 231 (654)
-.+-+.. ..+.++.+.|++-...++++.+...+ ..+|+.+..-++....+++|.+.|..-..
T Consensus 758 ld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 758 LDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 6655443 24566777777777777777653221 34677777777777777777777655432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 006246 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311 (654)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (654)
-...+.+|.+..++++-+.+-..+++. ....-.|..++...|.-++|.+.|-+- + .| ...+..|..+++
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHH
Confidence 122345555555555555555555443 233445666677777777776665322 1 11 134455666666
Q ss_pred hhHHHHHHHHHHHcCC-----------CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH---HHHHHHHHHH----H
Q 006246 312 LDQGIWIHDHVKRNSI-----------CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV---FTWNAMIGGL----A 373 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~-----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~----~ 373 (654)
+.+|.++-+...-..+ -.+..+ ---|..+.+.|+.-+|-+++.+|.++.. +.|--+=..| .
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 6666554433210000 000000 0124556666666566666655554211 0111110001 0
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHH
Q 006246 374 MHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAE 453 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 453 (654)
-..+..++++-.++....|...|... +...|...++.++.+..-. | ....++..|.+--...|.++.|+
T Consensus 973 LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 973 LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHH
Confidence 11223344444444444443322221 1223333444444443322 1 22345555666666788888888
Q ss_pred HHHHhCC----CCCCHHHHHHHHHH
Q 006246 454 EVISSMP----MEPNAAVWEALLGA 474 (654)
Q Consensus 454 ~~~~~m~----~~p~~~~~~~ll~~ 474 (654)
+.--.+. +-|-..+|..|.-+
T Consensus 1042 ~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1042 QTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHhhhccHhhcCCHHHHHHHHHHH
Confidence 7544442 33445556554433
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.0066 Score=64.77 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 006246 359 MKEVFTWNAMIGGLAMHG-----RADDAIELFFKMQREKMRPDRI-TFACVLSACAHA--------GMIDRGLQALTYMQ 424 (654)
Q Consensus 359 ~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~--------g~~~~a~~~~~~~~ 424 (654)
..|...|...+.+..... ..+.|..+|++..+. .||.. .|..+..++... +++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 357778888877754432 367899999999885 56643 444333322211 12334444444433
Q ss_pred HHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCC
Q 006246 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRR 500 (654)
Q Consensus 425 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 500 (654)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 31113334567888877777889999999999988 56789999999999999999999999999999999999873
No 156
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.11 Score=48.36 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHh---CC-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 006246 276 YYKEALEVFNEMQR---DK-IKPRKFV-LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350 (654)
Q Consensus 276 ~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 350 (654)
++++.++++.++.. .| ..++..+ |-.++-+....|+.+.|...+..+...- +.+..+...-.-.+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34555555555433 22 3333332 2333444445555566666555554432 22222222222223345566666
Q ss_pred HHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 006246 351 WKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMY 427 (654)
Q Consensus 351 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 427 (654)
.++++.+.+. |.+++---+...-..|+.-+|++-+.+-.+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-- 182 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-- 182 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--
Confidence 6666665543 3344444444555555555666655555544 344666666666666666666666666666653
Q ss_pred CCCCC-cchHHHHHHHHHHcC---CHHHHHHHHHhC
Q 006246 428 GIDPE-VEHYGCIVDLLGRAG---YLAEAEEVISSM 459 (654)
Q Consensus 428 g~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m 459 (654)
+.|. ...+..+.+.+.-.| +++-|.+.|.+.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2332 223344444433333 344455555544
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.28 E-value=0.0036 Score=49.47 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3444555555666666666666655532 122344555555555566666666666665542 1222345555556666
Q ss_pred HcCCHHHHHHHHHhC
Q 006246 445 RAGYLAEAEEVISSM 459 (654)
Q Consensus 445 ~~g~~~~A~~~~~~m 459 (654)
..|++++|...+++.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 666666666665543
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0072 Score=54.72 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD--RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYG 437 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~ 437 (654)
....+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+.+..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777778888888888888888876543332 346677777778888888888888877763 23 344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 006246 438 CIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510 (654)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~ 510 (654)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ ..++....+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~ 163 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN--YIEAQNWLKT 163 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh--HHHHHHHHHh
Confidence 6666666666665554332221 112677888899999999886 3444444443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.05 Score=53.72 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCC--chh
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKF------VLSCVLAACASLGALDQGIWIHDHVKRN--SICV--DAV 332 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~ 332 (654)
.+..+...+.+.|++++|.++|++....-...+.. .|...+-++...|+...|...++..... ++.. ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45667777888888888888888876643222111 1222233445566777777777766543 2222 233
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHhhcCCCCH
Q 006246 333 LGTALVDMYAKC--GRLDMAWKVFEDMKMKEV 362 (654)
Q Consensus 333 ~~~~li~~y~~~--g~~~~A~~~~~~m~~~~~ 362 (654)
+...|+.+|-.. ..+++|..-|+.+..-|.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 445566666432 346666666666665443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.028 Score=55.48 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=58.3
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHhCC---C-----CCCHH-HHHH
Q 006246 405 SACAHA-GMIDRGLQALTYMQQMYGIDPE----VEHYGCIVDLLGRAGYLAEAEEVISSMP---M-----EPNAA-VWEA 470 (654)
Q Consensus 405 ~~~~~~-g~~~~a~~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ 470 (654)
..|... |++++|++.|++..+.+..... ...+..+...+.+.|++++|.++|++.. . +.+.. .+-.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344455 6777777777776654322222 2345566677888888888888887651 1 11111 2222
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHH
Q 006246 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVA 505 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~ 505 (654)
.+-.+...||+..|.+.+++..+.+|.-..-+|..
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 33355667888888888888888888766444443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00084 Score=52.48 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=36.3
Q ss_pred cCChhHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHH
Q 006246 375 HGRADDAIELFFKMQREKMR-PDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEA 452 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 452 (654)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+ ..|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35556666666666554221 1233333455555555666666555555 11 1111 12222334555555555555
Q ss_pred HHHHH
Q 006246 453 EEVIS 457 (654)
Q Consensus 453 ~~~~~ 457 (654)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.0036 Score=63.86 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=47.5
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHH
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 485 (654)
...|++++|++.|+++.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3445555555555555442 1122334444455555555555555555554 2223 3555555666666666666666
Q ss_pred HHHHHHHhcCCCCC
Q 006246 486 RLGKILLEMEPQNR 499 (654)
Q Consensus 486 ~~~~~~~~~~p~~~ 499 (654)
..++++++++|++.
T Consensus 91 ~~~~~al~l~P~~~ 104 (356)
T PLN03088 91 AALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHhCCCCH
Confidence 66666666666655
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.00073 Score=50.45 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCC
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHG-EVEFGERLGKILLEMEP 496 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 496 (654)
...|..+...+...|++++|+..|++. ...| ++..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456778888889999999999999877 3344 5888999999999999 79999999999999988
No 164
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.46 Score=51.01 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHhCCCchHHHHHHHHh--------HhCCCCCCcccHHH-----HHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHH
Q 006246 108 CLEHNEPWRVISLYSEM--------VGVDSKPNKFTYPT-----VFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSG 174 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 174 (654)
+.+.-++++-..+-+++ ..-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 33444555544444333 23455555544443 3455566677777777766654221112 5677777
Q ss_pred HHHHHhcCC---HHHHHHHHhcCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHhcCCC--------CcchHHHHHHHHH
Q 006246 175 IQMYACFGC---VNKARQILDDGSK--SDVICWNALIDGYLKCGDIEGAKELFKSTKDK--------NTGSYNAMISGFA 241 (654)
Q Consensus 175 i~~y~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~ 241 (654)
..-+.+..+ -+-+..+-+++.. ...++|..+..-..++|+.+.|..+++.=... +..-+..-+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 777776632 3334444444444 56778888888888899999998887654332 1222333444445
Q ss_pred hcCCHHHHHHHHHhcC
Q 006246 242 RFGRFEEARKLFNEMN 257 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~ 257 (654)
+.|+.+-...++-.+.
T Consensus 558 es~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLK 573 (829)
T ss_pred hcCCchhHHHHHHHHH
Confidence 5555555555444443
No 165
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.15 E-value=0.34 Score=48.74 Aligned_cols=413 Identities=13% Similarity=0.120 Sum_probs=222.6
Q ss_pred CCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHH
Q 006246 62 FQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNV---FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPT 138 (654)
Q Consensus 62 ~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 138 (654)
+.|..+|-.||.-|.. .|.+++.++++++|..|-+ .+|...|++-....++.....+|.+-+..... ...|..
T Consensus 39 PtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~l 114 (660)
T COG5107 39 PTNILSYFQLIQYLET--QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWML 114 (660)
T ss_pred chhHHHHHHHHHHHhh--hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHH
Confidence 4578899999999999 9999999999999997754 47998898877778899999999988876444 334444
Q ss_pred HHHHHhccCCcH------HHHHHHHHHHH-hCCCCC-hhhHHHHHHHHH---hcC------CHHHHHHHHhcCCCC---C
Q 006246 139 VFKACSITEADK------EGVQVHAHVVK-NGLCGD-VHVKSSGIQMYA---CFG------CVNKARQILDDGSKS---D 198 (654)
Q Consensus 139 ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---~~g------~~~~A~~~~~~~~~~---~ 198 (654)
-+.-..+....- .-.+.++..+. .+++|. ...|+..+...- ..| +++..++.+.++... +
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 443322222211 12234444443 345543 334555444321 122 344445555554221 1
Q ss_pred h-hhHHH------HHHHHH-H------cCCHHHHHHHHHhcCC-------C---CcchHHH-----------HHHHHHhc
Q 006246 199 V-ICWNA------LIDGYL-K------CGDIEGAKELFKSTKD-------K---NTGSYNA-----------MISGFARF 243 (654)
Q Consensus 199 ~-~~~~~------li~~~~-~------~g~~~~A~~~~~~m~~-------~---~~~~~~~-----------li~~~~~~ 243 (654)
. ..|+. =+.... + .--+-.|...+++... . +..++|. .|.-=...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 1 11111 111000 0 0012233333333321 0 1111111 11100000
Q ss_pred -----CC-HHH-HHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCh
Q 006246 244 -----GR-FEE-ARKLFNEMND---KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL-GAL 312 (654)
Q Consensus 244 -----g~-~~~-A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~ 312 (654)
|+ .++ ..-+|++... -....|----.-+...++-+.|++..++.... .|. ++..++-|-.+ .+-
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhcccH
Confidence 00 000 0000111000 01112222222234455666666655433221 222 33333333322 233
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHH---------cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 006246 313 DQGIWIHDHVKRNSICVDAVLGTALVDMYAK---------CGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIE 383 (654)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (654)
+.....|+...+ .|..-|.+ -|+++.-.+++-+-..+=...|...+..-.+..-.+.|..
T Consensus 350 e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 350 EAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 322222322211 12222211 1112222222211112345678888888888888899999
Q ss_pred HHHHHhhcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchH-HHHHHHHHHcCCHHHHHHHHHhC--
Q 006246 384 LFFKMQREK-MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY-GCIVDLLGRAGYLAEAEEVISSM-- 459 (654)
Q Consensus 384 l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-- 459 (654)
+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||...| ...+..+.+.++-+.|..+|+..
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 999999988 6677888888887655 57788889999877664 2444443 45667788999999999999965
Q ss_pred CCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 460 PMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 460 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 22333 6789999999999999999999999999988874
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.12 E-value=0.014 Score=48.77 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPD----RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCI 439 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~l 439 (654)
+..++..+.+.|++++|.+.|.++.+.. |+ ...+..+..++...|++++|..+|+.+...+.-.| ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4445555666666666666666665532 22 23444455666666666666666666655321111 13345555
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 006246 440 VDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m 459 (654)
..++.+.|+.++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 66666666666666666655
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.11 E-value=0.38 Score=48.57 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=90.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHhcccccCCChHHHHHHHhcCCCCC-cchHHHHHHH--HHhCC
Q 006246 41 KCHTSWQHLKQAHAVILKSGHFQ-----DHYVSGTLVKCHANSRFSNFELALKVFNSVHKPN-VFVWNSVLRA--CLEHN 112 (654)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g 112 (654)
...+++.++..+|..+.+.--.. .....+.++++|.- .+++..........+.. -..|-.+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 45688999999999998764221 13345788899875 45655555544443211 3345555554 34678
Q ss_pred CchHHHHHHHHhHhC--CCCC------------CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC----CChhhHHHH
Q 006246 113 EPWRVISLYSEMVGV--DSKP------------NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLC----GDVHVKSSG 174 (654)
Q Consensus 113 ~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 174 (654)
.+.+|++.+..-.+. +-.| |-+.=+.....+...|++.+|+.++++++..=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999998777654 2222 1111134455678899999999999998876443 678888888
Q ss_pred HHHHHhc
Q 006246 175 IQMYACF 181 (654)
Q Consensus 175 i~~y~~~ 181 (654)
+-++.+.
T Consensus 174 vlmlsrS 180 (549)
T PF07079_consen 174 VLMLSRS 180 (549)
T ss_pred HHHHhHH
Confidence 8777553
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.36 Score=48.13 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 006246 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGA 311 (654)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (654)
+.+..|.-+...|+...|.++-.+..-||-..|-..+.+++..++|++-.++.. . +-.+.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCC
Confidence 455566667777888888888888877888888888888888888887655432 1 2234677788888888888
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 006246 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKV 353 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 353 (654)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777666551 114567778888888887654
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.22 Score=46.51 Aligned_cols=168 Identities=10% Similarity=0.047 Sum_probs=116.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCC----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHH
Q 006246 232 SYNAMISGFARFGRFEEARKLFNEMNDK----------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSC 301 (654)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 301 (654)
-+++|++.+.-..-+++-...|+.-..+ -....+.++..+...|.+.-.+.++++.++...+-+....+.
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3555555555555555555555443322 223456677777778888888999999988765667777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHH-----HHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHH
Q 006246 302 VLAACASLGALDQGIWIHDHVKRNSICVDAVLGTA-----LVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLA 373 (654)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 373 (654)
+.+.-.+.|+.+.|...++...+..-..+...++. ....|.-..++..|...|++++. .|++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 88888899999999999998876543333333333 33446667788889888988775 36666777666677
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 006246 374 MHGRADDAIELFFKMQREKMRPDRITFA 401 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 401 (654)
-.|+..+|++..+.|.+. .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 788999999999999886 44444433
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.007 Score=57.44 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=79.2
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCC
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGY 448 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 448 (654)
.-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 34667889999999999999863 33777788888899999999999988888775 4554 5689999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHH
Q 006246 449 LAEAEEVISSM-PMEPNAAVWE 469 (654)
Q Consensus 449 ~~~A~~~~~~m-~~~p~~~~~~ 469 (654)
+++|++.|++. .++|+-.+|.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHH
Confidence 99999999887 6888766654
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.022 Score=49.37 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
.+..-+...|++++|.++|+-+.. .+..-|-.|...+-..|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 455566778999999999987764 3567788888889999999999999999888753 467788888888999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 006246 413 IDRGLQALTYMQQMYG 428 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g 428 (654)
.+.|++.|+......+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998887544
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.049 Score=56.82 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=112.9
Q ss_pred HHHHHHHHhccCCcHHHHH--HHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 006246 136 YPTVFKACSITEADKEGVQ--VHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCG 213 (654)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 213 (654)
++..-++|.+..+..--+- -++.+.+.|-.|+... +...++-.|++.+|-++| .++|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklF------------------k~~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLF------------------KRSG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHH------------------HHcC
Confidence 4444455555555443332 2445666676566543 344556677888887777 4455
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHH-----
Q 006246 214 DIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNE----- 286 (654)
Q Consensus 214 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 286 (654)
.-..|+++|..|+-- -...-|.+.|..++-..+.++-.+ .|+----+....+...|+.++|..+.-+
T Consensus 660 ~enRAlEmyTDlRMF------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d 733 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVD 733 (1081)
T ss_pred chhhHHHHHHHHHHH------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHH
Confidence 555555555444311 011222222322222222211100 0100001222334445555555443211
Q ss_pred -HHhCCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C
Q 006246 287 -MQRDKI---KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM--K 360 (654)
Q Consensus 287 -m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~ 360 (654)
+.+-+- ..+..+...+...+-+...+..|-++|..+-.. .+++++....++|++|..+-++.++ +
T Consensus 734 ~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~ 804 (1081)
T KOG1538|consen 734 MLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKD 804 (1081)
T ss_pred HHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccc
Confidence 111111 223344445555556667777888888776543 2578888888999999998888876 3
Q ss_pred CHH-----------HHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 361 EVF-----------TWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 361 ~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
|+. -|..--.+|-+.|+-.+|..+++++...
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 332 1222345677777777777777776554
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.98 E-value=0.014 Score=50.58 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=53.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
+....-.+...+.+.|++++|..+|+.+..-. +-+..-|..+..+|...|++++|+..|..+.... +.|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33344444555566666666666666665542 2233344445555555666666666666666555 245555555666
Q ss_pred HHHHcCCHHHHHHHHhhc
Q 006246 340 MYAKCGRLDMAWKVFEDM 357 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m 357 (654)
+|.+.|+.+.|++.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666666544
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.98 E-value=0.024 Score=51.29 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=76.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR--KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (654)
....+..+...+...|++++|+..|++.......+. ...+..+...+.+.|++++|...+..+.+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777777778888888888887776432222 2455666666777777777777777777653 2245555566
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 006246 338 VDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 411 (654)
..+|...|+...+..-++.. ...+++|++++++.... .|+. |..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 66676666655544322221 11246677777776653 3333 545555554444
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0069 Score=54.95 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=71.7
Q ss_pred HHHhhc--CCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-------------
Q 006246 352 KVFEDM--KMKEVFTWNAMIGGLAMH-----GRADDAIELFFKMQREKMRPDRITFACVLSACAHAG------------- 411 (654)
Q Consensus 352 ~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g------------- 411 (654)
..|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 345544 345667777777777654 566667777888888888888889988888765432
Q ss_pred ---CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCC
Q 006246 412 ---MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448 (654)
Q Consensus 412 ---~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 448 (654)
+.+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 35678889999987 6999999999999988877765
No 176
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.15 Score=51.34 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---C----HHHHHHHHHHHHH---cCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKMK---E----VFTWNAMIGGLAM---HGRADDAIELFFKMQREKMRPDRITFACVLS 405 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 405 (654)
.++-.|-...+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777653 1 1111122334455 6778888888888655555667777776665
Q ss_pred HHHc---------cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHH----HHHH---Hh-C------CCC
Q 006246 406 ACAH---------AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA----EEVI---SS-M------PME 462 (654)
Q Consensus 406 ~~~~---------~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m------~~~ 462 (654)
.|-. ....++|+..+.+.- .+.|+..+--.++.++...|...+. .++. .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4431 223667777776553 4567665544555555555542222 2222 11 1 122
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 463 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.|-..+.+++.++.-.|+.+.|.+++++++.+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4566678999999999999999999999999987753
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.027 Score=55.34 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAA-CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666665332 1122222222222 22234455566666665554 344555566666666
Q ss_pred HHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 342 AKCGRLDMAWKVFEDMKMK------EVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665542 123566666555556666666666655555
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.90 E-value=0.0097 Score=47.78 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=59.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChh
Q 006246 301 CVLAACASLGALDQGIWIHDHVKRNSI-CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRAD 379 (654)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 379 (654)
..+..|...+++...-.+|+.+++.|+ .|++.+|+.++.+.++..--. ..-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHHHHH
Confidence 344455555777777777777777777 677777777777665432110 11123445
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 380 DAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 778889999999999999999999987654
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.90 E-value=0.014 Score=59.87 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=57.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRD--KIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTAL 337 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (654)
+.+....++..+....+.+++..++.+.+.. ....-..|..+++..|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344445555555555566666666665554 22223344556666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHhhcC
Q 006246 338 VDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~ 358 (654)
++.+.+.|++..|.++...|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHH
Confidence 666666666666666655554
No 180
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.016 Score=59.19 Aligned_cols=92 Identities=9% Similarity=0.001 Sum_probs=56.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCH
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 449 (654)
..+...|++++|+++|+++++.. +-+...|..+..++.+.|++++|+..++.+.+. -+.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 34455667777777777776643 224455666666666777777777777766652 122344566666677777777
Q ss_pred HHHHHHHHhC-CCCCC
Q 006246 450 AEAEEVISSM-PMEPN 464 (654)
Q Consensus 450 ~~A~~~~~~m-~~~p~ 464 (654)
++|+..|++. ...|+
T Consensus 87 ~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 87 QTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777665 33444
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.88 E-value=0.005 Score=48.01 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKM--KEVFTWNAMIGGLAMHGRADDAIELFF 386 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~ 386 (654)
+..+|.+.|++++|..++++... .+....-.+..+|.+.|++++|++.|+
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44555555555555555544110 122222233444445555555555444
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.019 Score=46.17 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCchhH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKI-KPRKFVLSCVLAACASLG--------ALDQGIWIHDHVKRNSICVDAVL 333 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 333 (654)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777778999999999999999999 999999999999877643 34467788999999999999999
Q ss_pred HHHHHHHHHH
Q 006246 334 GTALVDMYAK 343 (654)
Q Consensus 334 ~~~li~~y~~ 343 (654)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.42 Score=50.71 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=114.4
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCC--CCcccHHHHHHHHhccCCcHHHHHHHH
Q 006246 80 FSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSK--PNKFTYPTVFKACSITEADKEGVQVHA 157 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~ 157 (654)
.|++++|.++|-.+.++|.. |..+.+.|++-...++++.-- .+.. .-...|+.+-..++....+++|.+.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988864 566677777777776664311 1100 012356666666677777777777766
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHH
Q 006246 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMI 237 (654)
Q Consensus 158 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 237 (654)
+--. ....+.+|.+..++++-..+...+++ |....-.+...+...|.-++|...|-+...|. +-+
T Consensus 821 ~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv 885 (1189)
T KOG2041|consen 821 YCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV 885 (1189)
T ss_pred hccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence 5321 12355666666666655554444433 44455667777777788888777766555443 334
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHhHHHH--------------HHHHHHhcCChHHHHHHHHHHHh
Q 006246 238 SGFARFGRFEEARKLFNEMNDKDEITWSA--------------IIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 56667778888888877766554443211 23334555555555566655543
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.021 Score=51.43 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 362 VFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD--RITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|+..++...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666667777777777777777765432221 23566666677777777777777777665
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.77 E-value=0.014 Score=59.89 Aligned_cols=119 Identities=11% Similarity=0.131 Sum_probs=90.0
Q ss_pred CCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC-CCC-----cchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 006246 60 GHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPN-----VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK 133 (654)
Q Consensus 60 g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 133 (654)
+...+......+++.... ..+++++..++-+.. .|+ ..+..++|+.|.+.|..+++++++..=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~--~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVES--KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCC--HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 334455566667777766 677777887776554 221 235578999999999999999999998889999999
Q ss_pred ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 006246 134 FTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC 180 (654)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 180 (654)
+||+.|+..+.+.|++..|.++...|...+...+..++.--+..+.+
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 99999999999999999999999888877766666555444444433
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.76 E-value=0.033 Score=46.46 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHH
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKMRPD--RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLG 444 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~ 444 (654)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999887654 33677788889999999999999998887532111 1122233345677
Q ss_pred HcCCHHHHHHHHHh
Q 006246 445 RAGYLAEAEEVISS 458 (654)
Q Consensus 445 ~~g~~~~A~~~~~~ 458 (654)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887754
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.047 Score=45.53 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=60.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHH
Q 006246 266 AIIDGYTKDGYYKEALEVFNEMQRDKIKPR--KFVLSCVLAACASLGALDQGIWIHDHVKRNSIC--VDAVLGTALVDMY 341 (654)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y 341 (654)
.+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........ .+..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888887775543 234445566677777777777777776654211 0222222233455
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 006246 342 AKCGRLDMAWKVFEDMKMKEVFTWNAMI 369 (654)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~~~~~~li 369 (654)
...|+.++|.+.+-....++...|.--|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776665544433333333333
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.73 E-value=0.035 Score=50.02 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPR--KFVLSCVLAACASLGALDQGIWIHDHVKRN 325 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (654)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...+..+.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666666667777777777777665422221 124555555566666666666666665543
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.70 E-value=0.027 Score=54.43 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=70.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVISSM----PMEP-NAAVWEALL 472 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 472 (654)
.|...+....+.|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444443345567888888888888775322110 235666778888888888888888776 2212 255566677
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..+...|+.+.|...++++++..|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 788899999999999999999999874
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.19 Score=44.37 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC---CCCCHHHHHHHHHHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREK---MRPDRITFACVLSACA 408 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~ 408 (654)
.|..+....|+..+|...|++... .|....-.+..+....+++..|...++++.+.. -.|| +...+...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHH
Confidence 344444444444444444444332 233333444444444455555555555444421 1122 2233444455
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
-.|...+|...|+....- -|+...-......+.++|+.++|..
T Consensus 172 a~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 172 AQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 555555555555555441 3333333333444555555555443
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.24 Score=51.96 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006246 337 LVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG 416 (654)
Q Consensus 337 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 416 (654)
-..++...|+.++|..+ ...+|-.+-++++-+++-. .+..+...+..-+-+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 44556666777776554 2234444444444443322 1333444444444455556666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHHhCChHHH
Q 006246 417 LQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP-MEPNAAV-----------WEALLGACRKHGEVEFG 484 (654)
Q Consensus 417 ~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~ll~~~~~~g~~~~a 484 (654)
.++|.+|-.. ..++++....|++++|..+-++.| ..||+.. +...-.+|.+.|+-.+|
T Consensus 767 aeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 6666666432 345666667777777777777664 3333211 11222345555666666
Q ss_pred HHHHHHHHh
Q 006246 485 ERLGKILLE 493 (654)
Q Consensus 485 ~~~~~~~~~ 493 (654)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 666666544
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.61 E-value=0.59 Score=44.80 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHHc
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL----SCVLAACASLGALDQGIWIHDHVKRN 325 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (654)
.+-.....+.+.|++++|.+.|+++... .|+.... -.+..++.+.++++.|...++..++.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334444555666777777777666654 2322111 22334455555666666666555554
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.52 E-value=0.0025 Score=47.35 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVW 468 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 468 (654)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345666666666666553 1224445555666666666666666666665 233443333
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.51 E-value=0.18 Score=48.29 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--C-Hh---HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006246 238 SGFARFGRFEEARKLFNEMNDK--D-EI---TWSAIIDGYTKDGYYKEALEVFNEMQRDK 291 (654)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (654)
..+.+.|++++|.+.|+.+... + .. ..-.++.+|.+.+++++|...|++..+..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3344456666666666666542 1 11 12345667778888888888888887753
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.48 E-value=0.024 Score=51.52 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHHHhc--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-------------
Q 006246 250 RKLFNEM--NDKDEITWSAIIDGYTKD-----GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL------------- 309 (654)
Q Consensus 250 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 309 (654)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445555 445666777777776653 56666666777777777777777777777766431
Q ss_pred ---CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 310 ---GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788899999999999999999999988876654
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.0083 Score=45.24 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 440 VDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
-.+|.+.+++++|.++++++ ...| ++..|......+...|++++|...++++++..|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 35688899999999999987 3444 677888899999999999999999999999999874
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.45 E-value=0.15 Score=54.63 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 398 ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 398 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
..|..+.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444443334444556666666655554 2345555555555566666666666555543
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.34 E-value=0.013 Score=43.34 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=27.4
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 445 RAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 445 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
..|++++|+++|+++ ...| +..++..+...|.+.|++++|...+++++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 445555555555554 1122 44455555555555555555555555555555553
No 199
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.28 E-value=1.9 Score=49.00 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 243 FGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
.+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++ +|+...+..+..+|++. +
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------L 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------H
Confidence 366777777776665 234445555556677888888776 67777776666555431 1
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH--H
Q 006246 323 KRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT--F 400 (654)
Q Consensus 323 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 400 (654)
.+.. .|+--.-+|.++|+.++|++ +|...|++.+|+.+-.+|... -|... -
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 1111 12233456888888888866 455678888888887776532 13322 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (654)
..|..-+...++.-+|-++......+ +.--+..|+++-.+++|..+....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 45666777778777777776655432 2345667788888888888777654
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.22 E-value=0.0075 Score=46.22 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM-------P-MEPN-AAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555566666666666666666544 1 1122 566778888888888888888888887764
No 201
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=2.8 Score=45.95 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=116.2
Q ss_pred HHHHHhcccccCCChHHHHHHHhcCCCCCcchH----HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 006246 69 GTLVKCHANSRFSNFELALKVFNSVHKPNVFVW----NSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACS 144 (654)
Q Consensus 69 ~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 144 (654)
..-+++..+ ...++.|..+-..-.- |...- ......+.+.|++++|..-|-+-... +.| +.++.-+.
T Consensus 338 e~kL~iL~k--K~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFK--KNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 344556666 6677778777765432 22222 22233455789999999988776643 233 23555565
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHH
Q 006246 145 ITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVI-CWNALIDGYLKCGDIEGAKELFK 223 (654)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 223 (654)
.......-...++.+.+.|+. +..--..|+.+|.+.++.++-.+..+........ -....+..+.+.+-.++|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 666667777788888888864 4455677999999999999999888877632221 24556667777777777776655
Q ss_pred hcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006246 224 STKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDK 259 (654)
Q Consensus 224 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 259 (654)
.... +......++ -..+++++|.+.+..++-+
T Consensus 488 k~~~-he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 488 KFKK-HEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred Hhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 5444 333444443 3458899999999998754
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.10 E-value=0.02 Score=41.95 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..+.+.|++++|++.|++.++.. +-+...+..+..++...|++++|..+|+.+.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 11333444555555555555555555555544
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1.3 Score=44.32 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=29.7
Q ss_pred HHHHcCChhHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 371 GLAMHGRADDAIELFFKMQRE---KMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 371 ~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 344556666666666666542 233444455555555566666666665555444
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.99 E-value=0.036 Score=41.13 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG-MIDRGLQALTYMQQ 425 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~ 425 (654)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777777777777777777777753 224456666777777777 57777777777665
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.98 E-value=1.1 Score=39.86 Aligned_cols=131 Identities=14% Similarity=0.043 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH
Q 006246 360 KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439 (654)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l 439 (654)
|++.---.|..++...|+..+|...|++...--+.-|......+..+....++...|...++.+.+...-.-++..--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34445556788889999999999999998875556677888888888889999999999999988742111123345567
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 006246 440 VDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKHGEVEFGERLGKI 490 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 490 (654)
...|...|+.++|+..|+.. ..-|+...-.-...-+.++|+.+++..-+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 78888999999999988876 4455554433344445677766666544433
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=2.2 Score=42.83 Aligned_cols=151 Identities=13% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHh-HHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCcchHHHH---HH--------
Q 006246 239 GFARFGRFEEARKLFNEMNDKDEI-TWSAIID--GYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV---LA-------- 304 (654)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~-------- 304 (654)
++.-.|++++|...--.+.+-|.. .+...++ ++.-.++.+.|...|++.+..+ |+...-..+ ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 445567777776665555544332 2222332 2334567777777777766543 443322211 11
Q ss_pred --HHHhcCChhHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHH-HHHHH--HHHHHHcC
Q 006246 305 --ACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVF-TWNAM--IGGLAMHG 376 (654)
Q Consensus 305 --~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~l--i~~~~~~g 376 (654)
-..+.|++..|.+.|.+.+.. +..++...|-.......+.|+.++|+.--+....-|.. .+..+ ..++...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 123566777777777776653 23445555555666666777777777766666654432 22222 23344456
Q ss_pred ChhHHHHHHHHHhhc
Q 006246 377 RADDAIELFFKMQRE 391 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~ 391 (654)
++++|++-|++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777777666553
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.90 E-value=2.1 Score=45.45 Aligned_cols=168 Identities=18% Similarity=0.182 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-C---------hhhHHHHHHHHHH----cCCHHH
Q 006246 152 GVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKS-D---------VICWNALIDGYLK----CGDIEG 217 (654)
Q Consensus 152 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~---------~~~~~~li~~~~~----~g~~~~ 217 (654)
+.-++..++.. +| .....++....-.|+-+.+.+.+.+.... + ...|+.++..++. ....+.
T Consensus 176 G~G~f~L~lSl-LP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 22 23445566666667777777766654221 1 1234444544443 456788
Q ss_pred HHHHHHhcCC--CCcchHHHH-HHHHHhcCCHHHHHHHHHhcCCC-------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006246 218 AKELFKSTKD--KNTGSYNAM-ISGFARFGRFEEARKLFNEMNDK-------DEITWSAIIDGYTKDGYYKEALEVFNEM 287 (654)
Q Consensus 218 A~~~~~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (654)
|.++++.+.+ |+...|... .+.+...|++++|.+.|++.... ....+--+.-.+.-..+|++|.+.|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999999887 777666544 45667789999999999976541 2233445556678889999999999999
Q ss_pred HhCCCCCCcchHHHHHHHH-HhcCCh-------hHHHHHHHHHHH
Q 006246 288 QRDKIKPRKFVLSCVLAAC-ASLGAL-------DQGIWIHDHVKR 324 (654)
Q Consensus 288 ~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 324 (654)
.+.+ ..+..+|.-+..+| ...++. ++|.+++.++..
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9864 44555666555554 456666 777777777644
No 208
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.85 E-value=0.018 Score=35.75 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 465 AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 465 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+.+|..++..|...|++++|+..++++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999974
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.82 E-value=1.6 Score=40.69 Aligned_cols=199 Identities=17% Similarity=0.085 Sum_probs=121.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHH-H
Q 006246 297 FVLSCVLAACASLGALDQGIWIHDHVKRN-SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIG-G 371 (654)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~-~ 371 (654)
..+......+...+.+..+...+...... ........+..+...+...+....+.+.+...... +...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555555555555555432 22333444555555566666666776666665541 1122223333 6
Q ss_pred HHHcCChhHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCC
Q 006246 372 LAMHGRADDAIELFFKMQREKM--RPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGY 448 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~ 448 (654)
+...|+++.|...|.+...... ......+......+...++.+.+...+...... ... ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7778888888888888755211 112334444444466778888888888888763 223 35667777788888888
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 449 LAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 449 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888776 33344 455555666666667788888888888887775
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.78 E-value=1.4 Score=40.95 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKIKP--RKFVLSCVLAACASLGALDQGIWIHDHVKRN 325 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (654)
....+.+.|++++|.+.|+.+...-... -....-.+..++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555666666666666665541110 1112223344455555555555555555443
No 211
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.74 E-value=0.029 Score=34.69 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468889999999999999999999999999985
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.48 Score=44.35 Aligned_cols=135 Identities=10% Similarity=0.037 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHH---
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIV--- 440 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li--- 440 (654)
.-+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+. .-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345566666667888888899999988766667778888888888999999999999987765 2233333344333
Q ss_pred --HHHHHcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 441 --DLLGRAGYLAEAEEVISSMPM-EP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 441 --~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..|.-+.++.+|...+++.+. +| |++..|.-.-...-.|+...|.+..+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 445567888889888888742 22 455555555555667888889999988888888765
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.70 E-value=0.14 Score=49.43 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=37.8
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCC
Q 006246 374 MHGRADDAIELFFKMQREKMRPDR----ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGY 448 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 448 (654)
+.|++++|+..|+..++. .|+. ..+..+..++...|++++|...|+.+.+.+.-.|. ...+-.+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 344555555555555443 2222 23344444555555555555555555543222111 2222333444445555
Q ss_pred HHHHHHHHHhC
Q 006246 449 LAEAEEVISSM 459 (654)
Q Consensus 449 ~~~A~~~~~~m 459 (654)
.++|.+.+++.
T Consensus 233 ~~~A~~~~~~v 243 (263)
T PRK10803 233 TAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.45 Score=45.74 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CHHHHHH
Q 006246 396 DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG---YLAEAEEVISSM-PMEP-NAAVWEA 470 (654)
Q Consensus 396 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~ 470 (654)
|...|..|...|...|+.+.|...|.+..+- -.++...+..+..++..+. ...+|.++|+++ ..+| |+.+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 5667777778888888888888888777663 2334455556665554332 456777888877 4445 5667777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHH
Q 006246 471 LLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAK 506 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~ 506 (654)
|..++...|++.+|...++.+++..|.+..|....+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 778889999999999999999998888775555443
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.042 Score=54.30 Aligned_cols=49 Identities=8% Similarity=0.122 Sum_probs=28.5
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHH
Q 006246 108 CLEHNEPWRVISLYSEMVGVDSKPNKF----TYPTVFKACSITEADKEGVQVHA 157 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~ 157 (654)
+++.|+....+.+|+..++.|-. |.. .|+.|-++|...+++++|.+.|.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 56677777777777777766522 332 33444445555566666666554
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.63 E-value=0.037 Score=54.62 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH----cC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-------C--CHH
Q 006246 298 VLSCVLAACASLGALDQGIWIHDHVKR----NS-ICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-------K--EVF 363 (654)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~--~~~ 363 (654)
.++.+.+++.-.|+++.|.+.|+.... .| -.......-+|.+.|.-..++++|+..+.+-.. + ...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 444455555555555555555544322 22 112334445566666666666777666654322 1 234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
++-+|..+|...|..++|+.+.+.-++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555667777777777777766655443
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.59 E-value=0.02 Score=38.10 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+|..+..+|...|++++|+++++++++.+|+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4678889999999999999999999999999885
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.56 E-value=3.9 Score=43.24 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 006246 330 DAVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSA 406 (654)
Q Consensus 330 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 406 (654)
+..+|+..++--.+.|+.+.+.-.|++..-+ =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888889998888888887654 2234544444444458888888777776665444333333333334
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEV-EHYGCIVDLLGRAGYLAEAE---EVISSM-PMEPNAAVWEALLGA-----CR 476 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~-----~~ 476 (654)
+-..|+.+.|..+++.+.+. . |+. ..-..-+....|.|..+.+. +++... +.+-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999885 3 543 23333456677888888888 555443 222233333333322 34
Q ss_pred HhCChHHHHHHHHHHHhcCCCCC
Q 006246 477 KHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 477 ~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..++.+.|..++.++.+..|++.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCK 475 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccH
Confidence 45788999999999999988875
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.19 Score=42.30 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 393 MRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 393 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666665655555555554443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.18 Score=42.51 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH--------------HHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC----
Q 006246 398 ITFACVLSACAHAGMIDRGLQALTYM--------------QQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM---- 459 (654)
Q Consensus 398 ~t~~~ll~~~~~~g~~~~a~~~~~~~--------------~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 459 (654)
.++..++.++++.|+++....+++.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555444444332 111245577777778888888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q 006246 460 PMEPNAAVWEALLGACRKHG 479 (654)
Q Consensus 460 ~~~p~~~~~~~ll~~~~~~g 479 (654)
+++-+..+|..|+.-+...-
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 45555777877776555443
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.18 E-value=0.88 Score=42.31 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 238 SGFARFGRFEEARKLFNEMND--K----DEITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
..+...|++++|.+.|+.+.. | -....-.++.++.+.|++++|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556777777777776653 1 1234556777888888888888888888765
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.3 Score=46.90 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhcCCCCC-HHHHH
Q 006246 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHG---RADDAIELFFKMQREKMRPD-RITFA 401 (654)
Q Consensus 329 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~-~~t~~ 401 (654)
.|..-|--|...|...|+.+.|...|.+..+ +|...+..+..++.... ...++..+|++++.. .|+ ..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 3455555555555555555555555554432 34444444444433221 234455555555543 222 22333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 333444455555555555555544
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.07 E-value=0.059 Score=41.14 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
++..+...+...|++++|.+++++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555555555544
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1.2 Score=38.48 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006246 397 RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA-GYLAEAEEVISSMPMEPNAAVWEALLGAC 475 (654)
Q Consensus 397 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 475 (654)
......++..|.+.+.++++..++.++.. |...++.+... ++++.|.+++.+- .+...|..++..|
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33444566667677777666666655422 23334444444 6777777777763 2566777666655
Q ss_pred H
Q 006246 476 R 476 (654)
Q Consensus 476 ~ 476 (654)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 4
No 225
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.04 E-value=7.2 Score=43.27 Aligned_cols=200 Identities=10% Similarity=0.040 Sum_probs=125.6
Q ss_pred HHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCC--CCcchHHHHHHHH
Q 006246 31 QKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHK--PNVFVWNSVLRAC 108 (654)
Q Consensus 31 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~ 108 (654)
|..+|......+.|..+.|..+.+.....+.. |..+...|..+|.. .+..++|..+|++... |+......+--+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d--~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD--LGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH--HhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 44444323455788888888887776655544 78899999999999 9999999999999985 4443444455577
Q ss_pred HhCCCchH----HHHHHHHhHhCCCCCCcccHHHHHHHHhccC-C---------cHHHHHHHHHHHHhC-CCCChhhHHH
Q 006246 109 LEHNEPWR----VISLYSEMVGVDSKPNKFTYPTVFKACSITE-A---------DKEGVQVHAHVVKNG-LCGDVHVKSS 173 (654)
Q Consensus 109 ~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~ 173 (654)
++-+.+.+ |++++.. ++-+.+.|-++++...... . +..|....+.+++.+ ...+..-.--
T Consensus 121 vR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 77776654 5555542 3345666666666543321 1 234555666666544 1111111222
Q ss_pred HHHHHHhcCCHHHHHHHHhc-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHH
Q 006246 174 GIQMYACFGCVNKARQILDD-----GSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMIS 238 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 238 (654)
-.......|++++|.+++.. ....+...-+--+..+...+++.+..++-.+....+..-|...++
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~ 265 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD 265 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH
Confidence 23344567889999988843 355566666677777888888888887777776543332444333
No 226
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.02 E-value=1.9 Score=45.25 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=87.9
Q ss_pred HhcCCHHHHHHHHh--cC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 006246 179 ACFGCVNKARQILD--DG-SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 179 ~~~g~~~~A~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
.-.++++++.++.+ ++ +.-+..-.+.++.-+-+.|..+.|+.+-.. -..-.+...++|+++.|.++.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHCCC
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHHHh
Confidence 34455666444433 11 111233456666666777777777776322 13344556677888888777655
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 006246 256 MNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335 (654)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (654)
.. +...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+.-.++.......| -+|
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n 406 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DIN 406 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHH
Confidence 54 556788888888888888888888876542 4566666777777777777766666655 233
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDM 357 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m 357 (654)
....++...|+.++..+++.+.
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 4444455567777766665543
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.93 E-value=0.13 Score=52.45 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVE----HYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.++.+..+|.+.|++++|+..|++..+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555555554443 233321 2444444444445544444444443
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.93 E-value=0.21 Score=42.54 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=69.6
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC
Q 006246 442 LLGRAGYLAEAEEVISSM----PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKERGI 516 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~g~ 516 (654)
...+.|++++|.+.|+.+ |..| ....--.|+.+|.+.|++++|...+++.+++.|++++.+-|.=.+....-...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345778888888888877 2222 34555668899999999999999999999999999865555443332211100
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 006246 517 KTNPGSSMIDVNGVIHEFRTGDGSHPQVKEIYLMLKKIIEKLKMEGYSPN 566 (654)
Q Consensus 517 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~pd 566 (654)
. +.+..|..-+..-....++...+++++++-.+.-|.+|
T Consensus 99 ~-----------~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 99 E-----------GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred h-----------hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 0 11111111122233456667777777766544445444
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.79 E-value=5.5 Score=40.68 Aligned_cols=405 Identities=13% Similarity=0.092 Sum_probs=219.2
Q ss_pred CCChHHHHHHHhcCCC---CC------cchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH--HhccCC
Q 006246 80 FSNFELALKVFNSVHK---PN------VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA--CSITEA 148 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~ 148 (654)
.+++.+|.++|.++-. .+ .+.-+.+|++|..++ .+.-...+....+. .| ...|..+..+ +-+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhh
Confidence 7899999999988762 12 234567788887643 33333334444432 34 4456666666 457788
Q ss_pred cHHHHHHHHHHHHh--CCC------------CChhhHHHHHHHHHhcCCHHHHHHHHhcCC----C----CChhhHHHHH
Q 006246 149 DKEGVQVHAHVVKN--GLC------------GDVHVKSSGIQMYACFGCVNKARQILDDGS----K----SDVICWNALI 206 (654)
Q Consensus 149 ~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~----~~~~~~~~li 206 (654)
...|.+.+..-... +.. +|.+.-+..+......|++.+++.+++++. + -++.+||.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89998888776654 221 233344667788889999999999888762 2 4777888755
Q ss_pred HHHHHcCCH---------------HHHHHHHHhcCCCCcchH----------HHHHHHHHh-----cCCHHHHHHHHHhc
Q 006246 207 DGYLKCGDI---------------EGAKELFKSTKDKNTGSY----------NAMISGFAR-----FGRFEEARKLFNEM 256 (654)
Q Consensus 207 ~~~~~~g~~---------------~~A~~~~~~m~~~~~~~~----------~~li~~~~~-----~g~~~~A~~~~~~~ 256 (654)
-.+.+.=-. +-++-..++|...|...| ..++....- .--+=++.+.++.-
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 544432111 111111122221121111 111111100 00011111111111
Q ss_pred C-CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 006246 257 N-DKD-EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKP----RKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVD 330 (654)
Q Consensus 257 ~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (654)
- .|+ ......++..+.+ +.+++..+-+.+....+.+ =..+|..++..+.+.++...|.+.+..+.-.. |+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--Cc
Confidence 0 111 1112233333333 5666666665555443222 23578888888889999999998888776543 33
Q ss_pred hhHHH-------HHHHHHHHc----CCHHHHHHHHhhcCCCCHHH---HHHH---HHHHHHcCC-hhHHHHHHHHHhhcC
Q 006246 331 AVLGT-------ALVDMYAKC----GRLDMAWKVFEDMKMKEVFT---WNAM---IGGLAMHGR-ADDAIELFFKMQREK 392 (654)
Q Consensus 331 ~~~~~-------~li~~y~~~----g~~~~A~~~~~~m~~~~~~~---~~~l---i~~~~~~g~-~~~A~~l~~~m~~~g 392 (654)
..+.. .|.++.+.- -+..+=+.+|+.....|+.. -.-| ..-+-+.|. -++|+++++..++-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f- 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF- 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-
Confidence 22221 222332210 11223344555555443321 1112 233555665 78999999998873
Q ss_pred CCCCH-H----HHHHHHHHHHc---cCCHHHHHHHHHHHHHHcCCCCCc----chHHHHHHH--HHHcCCHHHHHHHHHh
Q 006246 393 MRPDR-I----TFACVLSACAH---AGMIDRGLQALTYMQQMYGIDPEV----EHYGCIVDL--LGRAGYLAEAEEVISS 458 (654)
Q Consensus 393 ~~p~~-~----t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~g~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~ 458 (654)
.|.. . ++..+=.+|.+ ...+.+-..+-+-+.+ .|+.|-. +.-|.|.++ +...|++.++.-.-.-
T Consensus 410 -t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 410 -TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3332 2 22222233332 2234444444444444 5887753 345666554 5578888888755444
Q ss_pred C-CCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 459 M-PMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 459 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
. .+.|++.++.-++-....+.++++|..++.. +-|++
T Consensus 488 L~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~ 525 (549)
T PF07079_consen 488 LTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNE 525 (549)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCch
Confidence 4 5789999999999999999999988777654 45544
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.69 E-value=0.24 Score=46.71 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-----------
Q 006246 350 AWKVFEDMK--MKEVFTWNAMIGGLAMH-----GRADDAIELFFKMQREKMRPDRITFACVLSACAHAG----------- 411 (654)
Q Consensus 350 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 411 (654)
.++.|..+. ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 56778888888877654 456666677889999999999999999998765543
Q ss_pred -----CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHH
Q 006246 412 -----MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 412 -----~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 450 (654)
+-+=++.++++|.. +|+.||.++-..|++++++.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457889999987 799999999999999999988643
No 231
>PRK09687 putative lyase; Provisional
Probab=94.67 E-value=4.8 Score=39.46 Aligned_cols=80 Identities=4% Similarity=-0.075 Sum_probs=36.6
Q ss_pred CchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHhHhCCCCCCcccHHH
Q 006246 63 QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEP----WRVISLYSEMVGVDSKPNKFTYPT 138 (654)
Q Consensus 63 ~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ 138 (654)
+|..+.-..+..+.. .|..+-...+..-...+|...-...+.++.+.|+. .+++..+..+... .||...-..
T Consensus 35 ~d~~vR~~A~~aL~~--~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQL--RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHh--cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 455555555555555 44432222222222244544444455556665543 3455555555332 244444444
Q ss_pred HHHHHhcc
Q 006246 139 VFKACSIT 146 (654)
Q Consensus 139 ll~~~~~~ 146 (654)
.+.+++..
T Consensus 111 A~~aLG~~ 118 (280)
T PRK09687 111 AINATGHR 118 (280)
T ss_pred HHHHHhcc
Confidence 44444433
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.59 E-value=0.33 Score=42.39 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----HcCCCCCcc
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ----MYGIDPEVE 434 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~g~~p~~~ 434 (654)
..++..+...|++++|+.+.+++.... +-|...|..++.++...|+..+|.+.|+.+.+ ..|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 334444555555555555555555542 22444555555555555555555555554432 235555543
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=3.1 Score=35.84 Aligned_cols=27 Identities=19% Similarity=0.524 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 006246 244 GRFEEARKLFNEMNDKDEITWSAIIDGYT 272 (654)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 272 (654)
++++.|.+.+.+- .+...|..++..+.
T Consensus 110 ~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5566666655542 23445555555443
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.14 E-value=9.3 Score=40.57 Aligned_cols=360 Identities=12% Similarity=0.064 Sum_probs=177.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchh-HHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHH-hCCCchHHH
Q 006246 44 TSWQHLKQAHAVILKSGHFQDHY-VSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACL-EHNEPWRVI 118 (654)
Q Consensus 44 ~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~-~~g~~~~A~ 118 (654)
.+...++.++..++.. -|-.+ .|-.....=.+ .|..+.+.++|++.. ..++..|...+..+. ..|+.+...
T Consensus 59 ~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~k--lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSK--YPLCYGYWKKFADYEYK--LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred hHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 3455666666666633 23333 33444444445 777888888887765 345556766665444 346667777
Q ss_pred HHHHHhHhC-CCCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-----cCCHHHHHHH-
Q 006246 119 SLYSEMVGV-DSKP-NKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYAC-----FGCVNKARQI- 190 (654)
Q Consensus 119 ~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-----~g~~~~A~~~- 190 (654)
++|+..... |..- ....|...|.--...+++....+++++.++.-...-...+.......-. ....+++.++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 777776652 2221 2234555555555666677777777776653211100111111110000 0111111111
Q ss_pred ----------------------HhcCCCC-Ch--hhHHHH-------HHHHHHcCCHHHHHHHHHhcCC-----------
Q 006246 191 ----------------------LDDGSKS-DV--ICWNAL-------IDGYLKCGDIEGAKELFKSTKD----------- 227 (654)
Q Consensus 191 ----------------------~~~~~~~-~~--~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~----------- 227 (654)
.+....+ +. ..-+.+ -..|...-...+....|+.-.+
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 1111111 00 001111 0112222222333333333222
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 006246 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304 (654)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (654)
++..+|..-++--.+.|+.+.+.-+|++..-|- ...|-..+.-....|+.+-|-.++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 245577777888888888888888888877652 23455555555555888877777766555433322222222222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH---HHHhhcCC--CCHHHHHHHHHHH-----HH
Q 006246 305 ACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAW---KVFEDMKM--KEVFTWNAMIGGL-----AM 374 (654)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~m~~--~~~~~~~~li~~~-----~~ 374 (654)
.+-..|+++.|..+++.+...- +.-+.+-..-+.+..+.|..+.+. .++..... .+....+.+..-+ .-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 3455678888888888877654 222333333455566677777766 33333222 1222222222222 22
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
.++.+.|..++.+|.+. ++++..-|..++.-+..
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 45666677777666654 34455555555554443
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.13 E-value=2.2 Score=36.50 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=56.1
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRP--DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 446 (654)
.....+.|++++|.+.|+.+...-.-. ....-..++.++.+.+++++|...+++.++.+.-.|++ -|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 334445566666666666665531110 12234455556666666666666666666544333432 343333333322
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 447 GYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 447 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
...+.+..-+- ..+-| .+....|...|+++++..|++.
T Consensus 96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 22111111111 11111 1225678888888888888875
No 236
>PRK09687 putative lyase; Provisional
Probab=94.10 E-value=6.4 Score=38.60 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 006246 227 DKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY----KEALEVFNEM 287 (654)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 287 (654)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344444444444444444433333333323344444444455555555542 3445555444
No 237
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.09 E-value=0.36 Score=36.07 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=25.3
Q ss_pred HHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 371 GLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 371 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|.+.+++++|++.++++...+ +.+...+......+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555432 11333344444444555555555555555543
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.08 E-value=2.1 Score=44.88 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh
Q 006246 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378 (654)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 378 (654)
...++.-+.+.|-.+.|.++-.. +. .-.+...++|+++.|.++-++.. +...|..|.....++|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 44455555555555555544322 11 22344556777777777666554 555777777777777777
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHh
Q 006246 379 DDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 379 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (654)
+-|.+.|++... |..|+-.|.-.|+.+.-.++.+..... | -++.-...+.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776543 445555566667766655555554442 2 134444444555666666666655
Q ss_pred CC
Q 006246 459 MP 460 (654)
Q Consensus 459 m~ 460 (654)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.94 E-value=7.6 Score=38.88 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=135.8
Q ss_pred CCChHHHHHHHhcCC---CCCcchHHHHHHHH--HhCCCchHHHHHHHHhHhCCCCCCcccHHH----HHHHHhccCCcH
Q 006246 80 FSNFELALKVFNSVH---KPNVFVWNSVLRAC--LEHNEPWRVISLYSEMVGVDSKPNKFTYPT----VFKACSITEADK 150 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~ 150 (654)
.|+-..|++.-.+.. ..|....-.++.+- .-.|+++.|.+-|+.|.. |+.|-.. |.-..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 566666666554433 23333333333322 235677777777777764 2222222 222234556666
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC-----CCCChhh--HHHHHHHHH---HcCCHHHHHH
Q 006246 151 EGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG-----SKSDVIC--WNALIDGYL---KCGDIEGAKE 220 (654)
Q Consensus 151 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~~~~~~~--~~~li~~~~---~~g~~~~A~~ 220 (654)
.|++.-+..-..- +.-...+.+++...+..|+++.|+++++.- ..+++.- -..|+.+-+ -.-+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666665554432 223456666666777777777777776642 3333321 112222111 1123444444
Q ss_pred HHHhcCC--CCcch-HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCc
Q 006246 221 LFKSTKD--KNTGS-YNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQR-DKIKPRK 296 (654)
Q Consensus 221 ~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~ 296 (654)
.-.+..+ ||... -..-..++.+.|++.++-.+++.+-+.....- +...|....--+.++.-+++..+ ..++||.
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 4333332 44332 22334567777777777777777654322221 22233333333444444444433 2244543
Q ss_pred -chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-cCCHHHHHHHHhhcCC
Q 006246 297 -FVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK-CGRLDMAWKVFEDMKM 359 (654)
Q Consensus 297 -~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~ 359 (654)
.....+..+....|++..|..--+.+.+. .|....|-.|.+.-.. .|+-.++.+.+.+...
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44555566666777777776655555443 4555666666655433 4777787777766543
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.91 E-value=3.3 Score=41.89 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 006246 235 AMISGFARFGRFEEARKLFNEMNDK---D----EITWSAIIDGYTK---DGYYKEALEVFNEMQRDKIKPRKFVLSCVLA 304 (654)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (654)
.++-+|-...+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566667777777777776653 1 1112223344555 7888888888888666555677777777666
Q ss_pred HH
Q 006246 305 AC 306 (654)
Q Consensus 305 ~~ 306 (654)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.84 E-value=7.9 Score=38.76 Aligned_cols=241 Identities=17% Similarity=0.147 Sum_probs=130.9
Q ss_pred cCCHHHHHHHHHhcCCC-Ccc--hHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHH
Q 006246 212 CGDIEGAKELFKSTKDK-NTG--SYNAMISGFARFGRFEEARKLFNEMNDK---DEITWSAIIDGYTKDGYYKEALEVFN 285 (654)
Q Consensus 212 ~g~~~~A~~~~~~m~~~-~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (654)
.|++++|.+-|+.|... ... -...|.-.-.+.|..+.|.+.-+..-.. -...+.+.+...+..|+|+.|+++.+
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 45555555555555431 111 1111222223456666666666555432 23467778888888888888888887
Q ss_pred HHHhCC-CCCCcc--hHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCchhHH-HHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 286 EMQRDK-IKPRKF--VLSCVLAACAS---LGALDQGIWIHDHVKRNSICVDAVLG-TALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 286 ~m~~~g-~~p~~~--t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
.-+... +.++.. .-..++.+-+. ..+...|+..-.+..+. .||..-. -.-..+|.+.|++.++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 766543 334332 12223332211 12344555554444443 3332211 123456778888888888888776
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh-cCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchH
Q 006246 359 MKEVFTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDR-ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHY 436 (654)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~ 436 (654)
+.....--. ..|....-.+.++.-+++..+ ..++||. .....+..+-...|++..|..--+.... ..|....|
T Consensus 291 K~ePHP~ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~ 365 (531)
T COG3898 291 KAEPHPDIA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAY 365 (531)
T ss_pred hcCCChHHH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHH
Confidence 532222112 233333333445544444433 1245544 4566667777777888777766655543 47777777
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHhC
Q 006246 437 GCIVDLLGR-AGYLAEAEEVISSM 459 (654)
Q Consensus 437 ~~li~~~~~-~g~~~~A~~~~~~m 459 (654)
..|.+.-.. .|+-.++...+-+.
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHH
Confidence 777776543 47777777777655
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.66 Score=46.45 Aligned_cols=110 Identities=15% Similarity=-0.010 Sum_probs=76.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 447 (654)
-...|.+.|++..|...|++.... |. +...-+.++..... . .-..++..|.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 356788899999999998887652 00 11111112221111 1 11345677778888999
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 448 YLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 448 ~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
++.+|++..++. .. ++|.-..--=..+|...|+++.|+..|+++++++|+|.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 999999888876 33 34677777778899999999999999999999999985
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.71 E-value=0.12 Score=31.83 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+|..+...|...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467888999999999999999999999999853
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.61 E-value=1.1 Score=46.00 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=39.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006246 197 SDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNT----GSYNAMISGFARFGRFEEARKLFNEMND 258 (654)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (654)
.+...|+.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|.+.|+.++|...+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666777777777777766554 332 2366666677777777777776666654
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=93.50 E-value=0.67 Score=40.56 Aligned_cols=91 Identities=11% Similarity=-0.107 Sum_probs=50.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
...-+.+.|++++|..+|+-+...+ .-+..-+..|..++-..+.+++|...|......+. .|+...--....|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444556677777777776665543 11222334444445556666777766666555432 233333345566666666
Q ss_pred HHHHHHHHhhcCC
Q 006246 347 LDMAWKVFEDMKM 359 (654)
Q Consensus 347 ~~~A~~~~~~m~~ 359 (654)
.+.|+..|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=1.7 Score=41.43 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=68.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 006246 399 TFACVLSACAHAGMIDRGLQALTYMQQMYGIDP-EVEHYGCIVDLLGRAGYLAEAEEVISSM----PMEP-NAAVWEALL 472 (654)
Q Consensus 399 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 472 (654)
.|+.-+. +.+.|++..|.+.|....+.|.-.+ ....+--|...+...|++++|...|..+ |-.| -+...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 4456778888888888877532111 1234555778888888888888888766 3233 246667777
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
......|+.++|...++++++-.|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 788888888888888888888888763
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.36 E-value=0.41 Score=41.79 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 006246 265 SAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHV 322 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (654)
..++..+...|++++|+.+.+.+.... +.|...+..++.++...|+...|.++|..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444555555555555555555543 334455555555555555555555555554
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=15 Score=40.19 Aligned_cols=301 Identities=15% Similarity=0.041 Sum_probs=168.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--HHHHH-HHHHhcCC--CCcchHHHHHHHHHhcC
Q 006246 173 SGIQMYACFGCVNKARQILDDGSKSD---VICWNALIDGYLKCGD--IEGAK-ELFKSTKD--KNTGSYNAMISGFARFG 244 (654)
Q Consensus 173 ~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~-~~~~~m~~--~~~~~~~~li~~~~~~g 244 (654)
.+++-+...+.+..|+++-..+..|- ...+.....-+.+..+ -++++ .+-+++.. -+..+|..+..-...+|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 45677778888999999888876554 3445555555555532 22333 33344444 46677888888888899
Q ss_pred CHHHHHHHHHhcCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC----------CCCC-cchHHHHHH-
Q 006246 245 RFEEARKLFNEMNDK--------DEITWSAIIDGYTKDGYYKEALEVFNEMQRDK----------IKPR-KFVLSCVLA- 304 (654)
Q Consensus 245 ~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p~-~~t~~~ll~- 304 (654)
+.+-|..+.+.=+.. +..-+...+.-..+.|+.+-...++..+.+.- ..|. ...|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 999999988754431 22335555666777777777777666654421 0111 111111111
Q ss_pred --------HHHhcCChhHHHHHHHHH-HH-cCCCCchhHHHHHHHHHHHcCCHHHH----------HHHHhhcCCC----
Q 006246 305 --------ACASLGALDQGIWIHDHV-KR-NSICVDAVLGTALVDMYAKCGRLDMA----------WKVFEDMKMK---- 360 (654)
Q Consensus 305 --------~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~~~~li~~y~~~g~~~~A----------~~~~~~m~~~---- 360 (654)
.|-...+......++-+- .+ ..+.+-........+.+++.....-. +++++.+...
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011111111111111111 00 00111111222334444444332111 1112222111
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH
Q 006246 361 -EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439 (654)
Q Consensus 361 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l 439 (654)
.--+.+--+.-+...|+..+|.++-.+.+ -||..-|-.-+.+++..+++++-.++-+..+ .+.-|.-.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PF 750 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPF 750 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhH
Confidence 11234444556677788888888766654 5677778778888888888887554443322 25567778
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 006246 440 VDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 490 (654)
+..+.++|+.+||.+++.+.+.-+ -...+|.+.|++.+|.+.+-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 888999999999999988875322 456778888888887766543
No 249
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.29 E-value=5.7 Score=37.52 Aligned_cols=226 Identities=14% Similarity=0.153 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCchh
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQR---DKIK--PRKFVLSCVLAACASLGALDQGIWIHDHVKRN-----SICVDAV 332 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 332 (654)
..-.+|..+.+.|++++.++.|++|+. +.+. -+..+.++++...+...+.+.-..+|+.-.+. +-..=-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 344556666666777766666666643 1111 12345566666555555555544444432220 0000011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC---------------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcC-CCCC
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMK---------------EVFTWNAMIGGLAMHGRADDAIELFFKMQREK-MRPD 396 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 396 (654)
+-+-|...|...|++.+-.+++.++... =...|..-|..|....+-.+-..+|++.+.-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 2234566666667776666666665420 12456677788888888777778888776532 2344
Q ss_pred HHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHHcC----CHHHHHHHHHhCCCC
Q 006246 397 RITFACVLSACA-----HAGMIDRGLQALTYMQQMYGIDPEVE-----HYGCIVDLLGRAG----YLAEAEEVISSMPME 462 (654)
Q Consensus 397 ~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~g~~p~~~-----~~~~li~~~~~~g----~~~~A~~~~~~m~~~ 462 (654)
+. ...++.-|. +.|.+++|-.-|-++.+.+.-.-++. -|-.|.+++.+.| +-.||. -.+..
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 33 445666664 56778877654444444343322222 2445566666665 112221 01234
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 463 PNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 463 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
|.......|+.+|..+. +..|++++..+.++
T Consensus 302 PEIlAMTnlv~aYQ~Nd-----I~eFE~Il~~~~~~ 332 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQNND-----IIEFERILKSNRSN 332 (440)
T ss_pred HHHHHHHHHHHHHhccc-----HHHHHHHHHhhhcc
Confidence 56677788999987764 33456666644444
No 250
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.04 E-value=0.34 Score=33.53 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=30.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 006246 470 ALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMK 512 (654)
Q Consensus 470 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~ 512 (654)
.+.-++.+.|+++.|.+..+.+++++|+| ..|..+.+.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~ 45 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence 45668899999999999999999999998 45655555443
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=93.02 E-value=3.3 Score=36.34 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=7.4
Q ss_pred HcCChhHHHHHHHHHhh
Q 006246 374 MHGRADDAIELFFKMQR 390 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~ 390 (654)
+.|++++|..+|+-+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 49 NQGRLDEAETFFRFLCI 65 (165)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34444444444444433
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.90 E-value=0.66 Score=43.91 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=74.4
Q ss_pred HHHHHhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-------------
Q 006246 250 RKLFNEMN--DKDEITWSAIIDGYTKD-----GYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL------------- 309 (654)
Q Consensus 250 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 309 (654)
++.|.... ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455555 55667777777766543 45666666677888888888888888888776442
Q ss_pred ---CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHhhcC
Q 006246 310 ---GALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL-DMAWKVFEDMK 358 (654)
Q Consensus 310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~ 358 (654)
.+-+-++.++++|...|+.||-.+-..|++++++.+-. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22356778888888888888888888888888877653 33444444443
No 253
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.90 E-value=18 Score=40.12 Aligned_cols=115 Identities=9% Similarity=0.051 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCch-----hHHHHHHHhcccccCCChHHHHHHHhcCCC----CCcchHHH----H-HHH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDH-----YVSGTLVKCHANSRFSNFELALKVFNSVHK----PNVFVWNS----V-LRA 107 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~----~~~~~~~~----l-i~~ 107 (654)
...+++.|+....+.+...-.++. .....|+..|.+ .+... |.+..++..+ .....|.. + +..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l 148 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL 148 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 456677777776655443222211 112344455555 33333 6666655431 11112222 2 222
Q ss_pred HHhCCCchHHHHHHHHhHhCC---CCCCcccHHHHHHHHh--ccCCcHHHHHHHHHH
Q 006246 108 CLEHNEPWRVISLYSEMVGVD---SKPNKFTYPTVFKACS--ITEADKEGVQVHAHV 159 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 159 (654)
+...+++..|++.++.+.... ..|-...+..++.+.. +.+..+.+.+....+
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 222367777777776665422 1222333444444432 334344555555544
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.83 E-value=12 Score=38.99 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=52.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHH
Q 006246 402 CVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPM--EPN--AAVWEALLGACRK 477 (654)
Q Consensus 402 ~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~ll~~~~~ 477 (654)
.+..++-+.|+.++|++.|+.+.+.+...........|++.|...+.+.++..++.+-.. -|. ...|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 344455556666666666666655322222233445566666666666666666665521 122 3334444433333
Q ss_pred hCCh---------------HHHHHHHHHHHhcCCCCC
Q 006246 478 HGEV---------------EFGERLGKILLEMEPQNR 499 (654)
Q Consensus 478 ~g~~---------------~~a~~~~~~~~~~~p~~~ 499 (654)
.++. ..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3331 235677888888888765
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=1.2 Score=44.57 Aligned_cols=78 Identities=18% Similarity=0.067 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006246 262 ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMY 341 (654)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 341 (654)
.+++.+..+|.+.+++.+|++.-.+.+..+ ++|.-.+-.-..++...|.++.|+..|..+++.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456677777788888888888777777764 4455555555666777777777777777776654 22333333444333
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=4.9 Score=38.78 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006246 208 GYLKCGDIEGAKELFKSTKD---KNTGSYNAMISGFARFGRFEEARKLFNEMND 258 (654)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (654)
.....|+..+|..+|+.... .+...--.+...|...|+++.|..++..++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34555566666655555443 2333444455555555555555555555543
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.57 E-value=3.4 Score=40.73 Aligned_cols=129 Identities=17% Similarity=0.072 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHH---HcCCCCCcchHH
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRP-----DRITFACVLSACAHAGMIDRGLQALTYMQQ---MYGIDPEVEHYG 437 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~g~~p~~~~~~ 437 (654)
-+|..++.-.+.++++++.|+...+---.. .-..+..|-+.|.+..++++|.-+..+..+ .+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345566666677888888887766521111 223577777778888888887766555433 123332222333
Q ss_pred H-----HHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 438 C-----IVDLLGRAGYLAEAEEVISSM-------PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 438 ~-----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
+ |.-+|-..|++.+|.+..++. +.+| -......+.+.|+..|+.|.|..-|+.+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3 334566777777777777654 3222 2444567788899999999988888877663
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.57 E-value=14 Score=37.87 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI-TFACVL 404 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll 404 (654)
..+|..+++.-.+..-++.|+++|-+..+ +++..+++++.-++ .|+..-|..+|+--... -||.. -....+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45777788888888888888888887764 47778888888776 46667888888765443 33443 334556
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHh
Q 006246 405 SACAHAGMIDRGLQALTYMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPNAAVWEALLGACRKH 478 (654)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 478 (654)
.-+...++-+.|..+|+...+. +..+ ...|..+|+-=..-|++..|..+=++| ..-|-..+.....+-|...
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 6667788888999999866653 3333 568999998888899998888777776 2334444444444555443
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=92.50 E-value=6.8 Score=40.50 Aligned_cols=109 Identities=15% Similarity=0.051 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHHcCCHHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE-VEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
..+|.++-++..+.+ +-|......+..+....++.+.|...|++... +.|+ ...|........-+|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445566666666554 33555555555555666667777777776654 3454 333444444455567777777777
Q ss_pred Hh-CCCCCC---HHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 457 SS-MPMEPN---AAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 457 ~~-m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
++ +...|. ..+....++.|..++ ++.|+++|-+-
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 66 344443 333333344444444 55555555443
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.42 E-value=10 Score=35.97 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRPDR---ITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..-|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44577777777777777777775 22122 2344555667777777777666555544
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=92.38 E-value=3 Score=43.01 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhh-cCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHc
Q 006246 378 ADDAIELFFKMQR-EKMRPDRI-TFACVLSACA---------HAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRA 446 (654)
Q Consensus 378 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 446 (654)
.+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-++..+- -.-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 5678888888872 23466544 3333332221 123455666666666652 234566666777777888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 447 GYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 447 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
|+++.|...|++. ...|| +.+|......+.-.|+.++|.+..+++++++|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 9999999999988 45665 7788888888899999999999999999999984
No 262
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.36 E-value=0.061 Score=46.90 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHH
Q 006246 138 TVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEG 217 (654)
Q Consensus 138 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (654)
.++..+.+.+.++.....++.+...+...+....+.++.+|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666777778888888888888777667788889999999998888888888874332 334566677777777777
Q ss_pred HHHHHHhc
Q 006246 218 AKELFKST 225 (654)
Q Consensus 218 A~~~~~~m 225 (654)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77765544
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.24 E-value=12 Score=36.63 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=13.3
Q ss_pred HHHHHhCChHHHHHHHHHHH
Q 006246 473 GACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~ 492 (654)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556677777777777554
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.11 E-value=0.26 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 467 VWEALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778888999999999999999986654
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.08 E-value=3.5 Score=34.52 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (654)
..+..+....+.|+-+.-.++++.+.+.+ .+++..+..+..||.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455666677777777777777666532 55666666677777777777777777777766664
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=1.7 Score=41.43 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=50.7
Q ss_pred HcCChhHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHHcCCHH
Q 006246 374 MHGRADDAIELFFKMQREKMRP--DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV-EHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~ 450 (654)
+.|++.+|..-|..-++....- ....+..|..++...|++++|..+|..+.+.++-.|.. +..--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4555666666666666542110 11234446666666677777777776666665555543 45556666666777777
Q ss_pred HHHHHHHhC
Q 006246 451 EAEEVISSM 459 (654)
Q Consensus 451 ~A~~~~~~m 459 (654)
+|...|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 777666665
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.93 E-value=10 Score=35.01 Aligned_cols=184 Identities=22% Similarity=0.163 Sum_probs=132.6
Q ss_pred CChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCChhHHHH
Q 006246 310 GALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHGRADDAIE 383 (654)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~ 383 (654)
+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443322 1356667788888999999999888887652 355677777888888899999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHHcCCCC----CcchHHHHHHHHHHcCCHHHHHHHHHh
Q 006246 384 LFFKMQREKMRPDRITFACVLS-ACAHAGMIDRGLQALTYMQQMYGIDP----EVEHYGCIVDLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 384 l~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (654)
.+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999887544432 22222333 78899999999999999854 233 233444444556788999999999988
Q ss_pred C-CCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 459 M-PMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 459 m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
. ...++ ...+..+...+...++.+.|...+..+++..|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7 33333 678888999999999999999999999998887
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.90 E-value=14 Score=36.35 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHH---HHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006246 233 YNAMISGFARFGRFEE---ARKLFNEMND--KD-EITWSAIIDGYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 233 ~~~li~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (654)
...++.+|...+..+. |.++.+.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555555444332 3333333321 12 333334444444455666666666666554
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.89 E-value=6.8 Score=32.86 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGI 429 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~ 429 (654)
.+.-+..+...|+-++-.+++.++.+. -+|++.....+..||.+.|+..++-+++.++-+. |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344456667777777777777776643 2566677777777788888877777777777663 54
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.80 E-value=12 Score=35.49 Aligned_cols=157 Identities=16% Similarity=0.108 Sum_probs=90.6
Q ss_pred HcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc---c---
Q 006246 343 KCGRLDMAWKVFEDMKMK------EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH---A--- 410 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~---~--- 410 (654)
+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++..+.-..-...-|...|.+.+. .
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 457777777777777653 1223344556667777888888877777664322222233333333332 1
Q ss_pred -CCH---HHHHHHHHHHHHHcCC---CCCcch------------HHHHHHHHHHcCCHHHHHHHHHhCC-CCC----CHH
Q 006246 411 -GMI---DRGLQALTYMQQMYGI---DPEVEH------------YGCIVDLLGRAGYLAEAEEVISSMP-MEP----NAA 466 (654)
Q Consensus 411 -g~~---~~a~~~~~~~~~~~g~---~p~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~ 466 (654)
.+. .+|..-|+.+..++.- .||+.. =..+..-|.+.|.+..|..-+++|- .-| ...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 222 3344444444443211 122111 1234567888899888888887771 112 244
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 467 VWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+-.+..+|...|-.++|.+..+-+-.-.|++.
T Consensus 206 aL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 206 ALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 566677899999999999888776665556553
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.69 E-value=9.1 Score=33.94 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=18.5
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 006246 158 HVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDD 193 (654)
Q Consensus 158 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 193 (654)
.+.+.+++++...+..+++.+.+.|++..-..++.-
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 334445555555555555555555555554444444
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.66 E-value=6.6 Score=38.84 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=121.0
Q ss_pred HcCCHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCHHHHHHH-------HHhcCCC--CHhHHHHHHHHHHhcC
Q 006246 211 KCGDIEGAKELFKSTKDK------NTGSYNAMISGFARFGRFEEARKL-------FNEMNDK--DEITWSAIIDGYTKDG 275 (654)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~-------~~~~~~~--~~~~~~~li~~~~~~g 275 (654)
...+.++|+..+.+.... -..++..+..+.++.|.+++++.. +....+. -..+|-.+..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444331 123455566666666666665432 1111111 1235666666666666
Q ss_pred ChHHHHHHHHHHHh-CCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHcCC
Q 006246 276 YYKEALEVFNEMQR-DKIKPR---KFVLSCVLAACASLGALDQGIWIHDHVKRNS-----ICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 276 ~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~ 346 (654)
++.+++.+-+.-.. .|..|. .....++..+....+.++++.+.|+.+.+.. ......++.+|...|++..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 66666666544333 233331 1233445667777778888888888776632 12245678888888998888
Q ss_pred HHHHHHHHhhcCC-------CCHH------HHHHHHHHHHHcCChhHHHHHHHHHhh----cCCCCCH-HHHHHHHHHHH
Q 006246 347 LDMAWKVFEDMKM-------KEVF------TWNAMIGGLAMHGRADDAIELFFKMQR----EKMRPDR-ITFACVLSACA 408 (654)
Q Consensus 347 ~~~A~~~~~~m~~-------~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~~~~ 408 (654)
+++|.-+..+..+ .|.. +.-.|..++...|..-+|.+.-++..+ .|-+|-. .....+...|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8887655443321 2332 233455677778888778777777544 3322211 23445556677
Q ss_pred ccCCHHHHHHHHHHHH
Q 006246 409 HAGMIDRGLQALTYMQ 424 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~ 424 (654)
..|+.+.|+.-++...
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 7788887776666543
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.03 E-value=14 Score=39.33 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHH-HHHHHHHHcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHcCChhHHH
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGT-ALVDMYAKCGRLDMAWKVFEDMKMK-------EVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~ 382 (654)
..+.+.+++..+.+.= |+...|. --...+...|++++|.+.|++.... ....+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4455555555555432 2322222 2234445556666666666643321 1122223333444555566666
Q ss_pred HHHHHHhhc
Q 006246 383 ELFFKMQRE 391 (654)
Q Consensus 383 ~l~~~m~~~ 391 (654)
+.|.++.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 666665553
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=29 Score=38.25 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 006246 400 FACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHG 479 (654)
Q Consensus 400 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 479 (654)
....+..|.+.|-+++-.-++.+| | .++.+|.-..-+.+++++|+++..+ ..|...|..|++-+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 344555666666666666666555 2 2344454455566677777776665 458999999998887765
Q ss_pred ChHHHH
Q 006246 480 EVEFGE 485 (654)
Q Consensus 480 ~~~~a~ 485 (654)
.+-.+.
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 444433
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=4.3 Score=37.89 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCH
Q 006246 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCV 184 (654)
Q Consensus 105 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 184 (654)
..+|-...++++|...+.+..+ +.+-|...|.. .++ .+.|..+..++.+. +--+..++.-..+|..+|..
T Consensus 38 AvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-AKa------yEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-AKA------YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-HHH------HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCc
Confidence 3455556667777666655542 11222222221 122 23333344444332 11223455666778888887
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC------C---CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 006246 185 NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD------K---NTGSYNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 185 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
+.|-..+++.-. ..++-++++|+.+|++... + -...+...-+.+.+..++++|-..|.+
T Consensus 108 dtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 108 DTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred chHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 777666554311 1445566677776655431 1 112244445555666666665555544
Q ss_pred cCCC--------CH-hHHHHHHHHHHhcCChHHHHHHHHH
Q 006246 256 MNDK--------DE-ITWSAIIDGYTKDGYYKEALEVFNE 286 (654)
Q Consensus 256 ~~~~--------~~-~~~~~li~~~~~~g~~~~A~~~~~~ 286 (654)
-..- +. ..|-..|-.|....++..|...++.
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3221 00 1233334444444555555555554
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.75 E-value=31 Score=38.28 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCc-------HHHHHHHHHHHHhCCCCChh
Q 006246 99 FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEAD-------KEGVQVHAHVVKNGLCGDVH 169 (654)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 169 (654)
..| ++|-.+.|.|++++|.++..+.... .......|...++.+....+- +....-+++.++.....|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344 5677888999999999999666543 456667888889988765332 34444555555443322443
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.25 E-value=8.5 Score=34.12 Aligned_cols=35 Identities=3% Similarity=-0.149 Sum_probs=23.3
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006246 119 SLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGV 153 (654)
Q Consensus 119 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 153 (654)
+.++.+.+.+++|+...+..++..+.+.|....-.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44555556677777777777777777777655433
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.19 E-value=8.5 Score=38.01 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHccCC--HHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRI--TFACVLSACAHAGM--IDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
.+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. |+++...+|..+.-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 356667777777777665433 33333333322222 44677888888874 888888887766543
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.14 E-value=24 Score=40.84 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 333 LGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 333 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
.|.-.++.--+.|.+.+|+.++..=.++--..|.+-..-+...+.+++|.-.|+..-+ ..--+.+|-..|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3344455555666777777666544433444555555666667788888877765533 1235678888999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006246 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (654)
|.+|..+..++.. +-.--..+-..|+.-+..+|+.-||-++..+..
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 9999988887754 222222334678888889999999999888774
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=5.3 Score=39.06 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=66.0
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHH----HHHHhcCCHH
Q 006246 110 EHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGI----QMYACFGCVN 185 (654)
Q Consensus 110 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~ 185 (654)
.+|+..+|-..++++++. .+.|-..+...=.+|...|+...-+..++.++-. ..+|...|.-+= -++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777764 4556666777777777788877777777776643 134443333322 2334666677
Q ss_pred HHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006246 186 KARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELF 222 (654)
Q Consensus 186 ~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (654)
+|.+.-++. .+-|..+-.++...+--+|+..++.++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 776666664 2334444445555555556666655553
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.01 E-value=2.8 Score=34.92 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=41.8
Q ss_pred HHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHhCC
Q 006246 407 CAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM----PMEP--NAAVWEALLGACRKHGE 480 (654)
Q Consensus 407 ~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~ 480 (654)
.+..|+++.|++.|.+...- .+.....||.-..++--+|+.++|++=+++. +-+. --..|-.-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34445555555555555431 2223444555555555555555555544443 1010 01122223344566666
Q ss_pred hHHHHHHHHHHHhcCC
Q 006246 481 VEFGERLGKILLEMEP 496 (654)
Q Consensus 481 ~~~a~~~~~~~~~~~p 496 (654)
.+.|..-|+.+-++..
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666555443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.90 E-value=7 Score=35.31 Aligned_cols=94 Identities=10% Similarity=0.084 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC------cch
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRI--TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE------VEH 435 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~------~~~ 435 (654)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++........| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34445555555555555555555555543333322 3344455555555555555555554432111111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
|..| .+...|++.+|.+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 223466777777766655
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.53 E-value=2.3 Score=35.45 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 441 DLLGRAGYLAEAEEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
-+++..|++++|++.|.+. .+ +.++..||.-..+++-+|+.++|..-+++++++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 3678899999999999876 33 3478899999999999999999999999999975443
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.92 E-value=0.87 Score=28.50 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666667777777777777776643
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=22 Score=33.47 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CchhHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSIC-----VDAVLGT 335 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~ 335 (654)
.|+--...|.++|.++.|-..+++.-+ .++.| +.|.++|++....-.. --...+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555666677766666655555432 12333 3444444433221000 0112233
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC--------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHhhcC---CCCCHHHHHHH
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKM--------KEV-FTWNAMIGGLAMHGRADDAIELFFKMQREK---MRPDRITFACV 403 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~l 403 (654)
.+...|.+..++++|-..|.+-.. ++. ..|-+.|-.|....++..|...++.--+.+ -.-+..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 344455555666666555543321 011 123344445555567777777776643321 11244566666
Q ss_pred HHHHHccCCHHHHHHH
Q 006246 404 LSACAHAGMIDRGLQA 419 (654)
Q Consensus 404 l~~~~~~g~~~~a~~~ 419 (654)
|.+| ..|+.++...+
T Consensus 235 L~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHh-ccCCHHHHHHH
Confidence 6665 34555554433
No 286
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.48 E-value=15 Score=33.77 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH--HhccCCcHHHHH
Q 006246 80 FSNFELALKVFNSVH--KPN-VFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA--CSITEADKEGVQ 154 (654)
Q Consensus 80 ~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~ 154 (654)
.|-+..|+-=|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.... .-|..+=++ +--.|+++.|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHH
Confidence 444555555554433 344 346888888888999999999999998875422 223333222 335677888877
Q ss_pred HHHHHHHhC
Q 006246 155 VHAHVVKNG 163 (654)
Q Consensus 155 ~~~~~~~~g 163 (654)
-+...-+.+
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 666665543
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.37 E-value=3.4 Score=39.99 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhh-----cCCCCCHHHHHH
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQR-----EKMRPDRITFAC 402 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 402 (654)
..++..++..+..+|+.+.+...+++.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346677888888899999888888887753 667899999999999999999998888765 577777766655
Q ss_pred HHHH
Q 006246 403 VLSA 406 (654)
Q Consensus 403 ll~~ 406 (654)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.13 E-value=7.2 Score=34.42 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=8.9
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006246 271 YTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~ 289 (654)
..+.|+...|+..|++.-.
T Consensus 104 ~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HhhcccHHHHHHHHHHHhc
Confidence 3344445555555544443
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.07 E-value=20 Score=32.47 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHH-----HHHHHHHcCCHHHH
Q 006246 380 DAIELFFKMQREKMRPDRITF--ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGC-----IVDLLGRAGYLAEA 452 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~-----li~~~~~~g~~~~A 452 (654)
+.....+++....-+....++ ..+...+...+++++|...++.... .|..+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555555666554212112222 2334567788999999999887764 233334443 44567789999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 453 EEVISSMPMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 453 ~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+..++....+. ....-..-++.+...|+.++|+..|+++++.++++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999864221 23334556678999999999999999999987654
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.95 E-value=1.5 Score=42.66 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=55.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcC
Q 006246 369 IGGLAMHGRADDAIELFFKMQREKMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAG 447 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 447 (654)
..-|.++|++++|+..|.+.+.. .| |.+++..-..+|.+...+..|..-...... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 34577777777777777766653 45 677777767777666655544433333322 0112334444433
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 448 YLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 448 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+-...|+.++|.+-++.+++++|++.
T Consensus 173 -------------------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 -------------------------QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred -------------------------HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 233344566677777777777777764
No 291
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.93 E-value=1.2 Score=29.32 Aligned_cols=37 Identities=24% Similarity=0.506 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEAL 471 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 471 (654)
.+..+...|.+.|++++|++++++. ...| |...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3455566666666666666666665 2233 34455443
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=7.9 Score=40.99 Aligned_cols=151 Identities=18% Similarity=0.125 Sum_probs=92.8
Q ss_pred HhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006246 179 ACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMND 258 (654)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (654)
.-.|+++.|..++..+++ ..-+.++.-+-+.|..++|+.+- +|.. .-.....+.|+++.|.++..+.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d---~rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPD---QRFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChh---hhhhhhhhcCcHHHHHHHHHhh--
Confidence 345666666666655552 33455666667777777777652 1211 1122345667888877765443
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 006246 259 KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALV 338 (654)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (654)
.+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHH
Confidence 3456788888888888888888888876654 445666677777766555555555555521 2233
Q ss_pred HHHHHcCCHHHHHHHHhhc
Q 006246 339 DMYAKCGRLDMAWKVFEDM 357 (654)
Q Consensus 339 ~~y~~~g~~~~A~~~~~~m 357 (654)
.+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 4456677777777766544
No 293
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.47 E-value=7.9 Score=30.61 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHH
Q 006246 237 ISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLS 300 (654)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (654)
+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345677788888888888888888888877654 46677777777777777776 45444443
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.99 E-value=24 Score=34.93 Aligned_cols=126 Identities=12% Similarity=0.216 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHcCC-
Q 006246 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACAS--LG----ALDQGIWIHDHVKRNSI---CVDAVLGTALVDMYAKCGR- 346 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~- 346 (654)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+... .++-..+..|+.+ ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888999998888777664444333 22 35678889999988642 2334444444433 2333
Q ss_pred ---HHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcC-C--hhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 006246 347 ---LDMAWKVFEDMKM-----KEVFTWNAMIGGLAMHG-R--ADDAIELFFKMQREKMRPDRITFACVL 404 (654)
Q Consensus 347 ---~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g-~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 404 (654)
.+.++.+|+.+.. .|..-+-+-+-++.... . ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3455666665554 23333333333333221 2 457889999999999998877765443
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.94 E-value=21 Score=31.37 Aligned_cols=104 Identities=19% Similarity=0.111 Sum_probs=68.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCh
Q 006246 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVE-HYGCIVDLLGRAGYLAEAEEVISSMP-MEPNAAVWEALLGACRKHGEV 481 (654)
Q Consensus 404 l~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~ 481 (654)
++.-.+.++.+++..++..+.- +.|... .-..-...+.+.|++.+|+.+|+++. ..|....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3344566788888888888764 355533 22333456778899999999998883 334555566777777777666
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 006246 482 EFGERLGKILLEMEPQNRRCDDVAKMRKLMKER 514 (654)
Q Consensus 482 ~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~~ 514 (654)
..=....+.+++..|+ +++..+.+.+..+
T Consensus 94 ~~Wr~~A~evle~~~d----~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD----PDARALVRALLAR 122 (160)
T ss_pred hHHHHHHHHHHhcCCC----hHHHHHHHHHHHh
Confidence 6667777888887766 3566655555544
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.81 E-value=44 Score=34.98 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=75.7
Q ss_pred CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHH
Q 006246 393 MRPDRITF-ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLL---GRAGYLAEAEEVISSM--PMEPNAA 466 (654)
Q Consensus 393 ~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 466 (654)
..|+..|+ +.++.-+.+.|-..+|...+..+.. --+|+...|..+|..= ..+| +..+.++++.| .+-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 46676665 4566677788889999999999887 3456777788887653 3344 77788888887 2336888
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHh-cCCC
Q 006246 467 VWEALLGACRKHGEVEFGERLGKILLE-MEPQ 497 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 497 (654)
.|...+.--..+|..+-+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 998888888899999888888887766 4443
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=33 Score=33.36 Aligned_cols=116 Identities=10% Similarity=0.097 Sum_probs=67.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH----HHHHHHHHHHHHcCChhHH
Q 006246 306 CASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV----FTWNAMIGGLAMHGRADDA 381 (654)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A 381 (654)
....|++.++...++.+...... +..+--.+...|...|+.+.|..++..++.... .....-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566677777777766665422 244455678888888999999998888875311 1112223334444444444
Q ss_pred HHHHHHHhhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 382 IELFFKMQREKMRP-DRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 382 ~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444333333 34 444555566667777777777766555444
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=57 Score=36.10 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=94.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C---ChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 006246 174 GIQMYACFGCVNKARQILDDGSK--S---DVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEE 248 (654)
Q Consensus 174 li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 248 (654)
-++.+.+.+.+++|..+.+.... + -...+...|..+.-.|++++|-...-.|...+..-|.--+.-+...++..+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 35556677778888877766421 1 234577778888888888888888888877777777777777766666554
Q ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006246 249 ARKLFNEMND-KDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSI 327 (654)
Q Consensus 249 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (654)
...+.-.-+. -+...|..++..|.. .+. .-|.+..+. -+++...-..++++ +..+..+..
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa------------~~~q~~q~S- 502 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISA------------TEPQIKQNS- 502 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhh------------cchHHHhhc-
Confidence 4333222222 144567776666665 222 222222221 11111111111111 111111111
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV 362 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 362 (654)
-+..+...|+..|...+++++|...+-....+++
T Consensus 503 -e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 -ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1122334488888888899999888887776544
No 299
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.33 E-value=1.4 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEMEPQ 497 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 497 (654)
.+|..+...+...|+++.|...+++.+++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667788888889999999999988888775
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.13 E-value=1.5 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 469 EALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 469 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
-.+..++.+.|+.++|.+.++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356677888999999999999999988874
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.85 E-value=0.26 Score=42.90 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=18.0
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHH
Q 006246 106 RACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKE 151 (654)
Q Consensus 106 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 151 (654)
..+.+.+.+.....+++.+...+...+....+.++..+++.++.+.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~ 60 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEK 60 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchH
Confidence 3333444444444444444433322233334444444444433333
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.62 E-value=1.9 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777778888888888888777766
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.47 E-value=26 Score=31.11 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=82.0
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH-----HHHHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDRI-TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI-----VDLLGR 445 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l-----i~~~~~ 445 (654)
+++.++.++|+.-|..+.+.|...-.+ .-.-......+.|+...|...|.++-.+ .|.+....-+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 466778888999998888876543222 2222334456788899999999988765 2322332222 234567
Q ss_pred cCCHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 446 AGYLAEAEEVISSMPME--P-NAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 446 ~g~~~~A~~~~~~m~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.|.+++...-++-+..+ | ....-.+|.-+-.+.|++..|.+.|+++.+
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88999888888877322 2 345567888888999999999999998876
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.63 E-value=16 Score=35.98 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=100.1
Q ss_pred HcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHH----HHHHHHHccCCHHH
Q 006246 343 KCGRLDMAWKVFEDMKM---KEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFA----CVLSACAHAGMIDR 415 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~ 415 (654)
..|+.-+|-..++++.+ .|..+|+--=.++...|+...-...++++... ..||...|. .+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35777777777877775 38888888888999999988888888888764 234443322 23334557888999
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHhCChHHHHHHH
Q 006246 416 GLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPN-------AAVWEALLGACRKHGEVEFGERLG 488 (654)
Q Consensus 416 a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 488 (654)
|.+.-++..+. -+.|.-.-.++...+--.|++.|+.++..+-...=+ .--|...+ .+...+.++.|+.+|
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 88887776542 123344445667778889999999999887641111 11122222 234558899999998
Q ss_pred HHHHh--cCCCCC
Q 006246 489 KILLE--MEPQNR 499 (654)
Q Consensus 489 ~~~~~--~~p~~~ 499 (654)
++=+- ++.++.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 76443 444443
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.23 E-value=2.3 Score=25.94 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5666677777777777777777776653
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.20 E-value=8.8 Score=37.22 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----HcCCCCCcchHHH
Q 006246 363 FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ----MYGIDPEVEHYGC 438 (654)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~g~~p~~~~~~~ 438 (654)
.++..++..+...|+.+.+.+.+++..... +-|...|..++.+|.+.|+...|++.++.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677788888888888888888888764 33777888888888888888888888887765 2355565554443
Q ss_pred H
Q 006246 439 I 439 (654)
Q Consensus 439 l 439 (654)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.05 E-value=28 Score=30.59 Aligned_cols=107 Identities=20% Similarity=0.108 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHhcC--CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHH
Q 006246 241 ARFGRFEEARKLFNEMN--DKDE-ITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIW 317 (654)
Q Consensus 241 ~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (654)
.+.++.+++..+++.+. .|.. ..-..-...+.+.|+|.+|+.+|+++.... |....-..++..|.....-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 45567777777777664 3322 111222334677888888888888876543 333333344444433332222222
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 006246 318 IHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWK 352 (654)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 352 (654)
.-.++.+.+-.|+. ..|+..+....+...|..
T Consensus 99 ~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 99 YADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 23334444433332 235555555444444433
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.74 E-value=20 Score=28.45 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 312 LDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45566666655554422 22232233445677899999999999998899999987754 4667777777777788777
Q ss_pred CCCCCHHHHH
Q 006246 392 KMRPDRITFA 401 (654)
Q Consensus 392 g~~p~~~t~~ 401 (654)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555554
No 309
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=79 Score=34.86 Aligned_cols=123 Identities=20% Similarity=0.141 Sum_probs=70.3
Q ss_pred HHHHcCChhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCC
Q 006246 371 GLAMHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448 (654)
Q Consensus 371 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 448 (654)
++..-|+-++|..+.++|.... .|-. .-...+..+|+-.|+.....+++.-... ...-|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 4455667778888888887643 2211 1233455677778877777777666554 334445555555555555666
Q ss_pred HHHHHHHHHhCC--CCCCH--HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 449 LAEAEEVISSMP--MEPNA--AVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 449 ~~~A~~~~~~m~--~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+....+++-+. ..|.+ -+--+|.-+|...|+ .+|+.+++-+.+ +|.+
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~ 638 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVD 638 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHH
Confidence 666666555552 12221 122345566777774 467777777665 5543
No 310
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=82.37 E-value=64 Score=33.23 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 006246 335 TALVDMYAKCGRLDMAWKVFEDMKMK---EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAH 409 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 409 (654)
..|+.-|.-.|.+.+|.....++.-| ..+.+.+++.+.-+.|+-+..+.++++.-..|+ +|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45788899999999999999988776 567888999988888887777777777766553 445555555543
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.29 E-value=60 Score=32.88 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC--cch
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP---DRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE--VEH 435 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~--~~~ 435 (654)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|+..++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45678888888999999999999888887744221 2233344455566778888888888877762 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CChHHHHHHHHHHHhcCCCCC
Q 006246 436 YGCIVDLLGRAGYLAEAEEV-ISSMPMEPNAAVWEALLGACRKH------GEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~ 499 (654)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+.+.++.|+..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1111111100 00000000 00000000123333444444444 788889999999999988754
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=93 Score=34.86 Aligned_cols=177 Identities=12% Similarity=0.117 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 006246 232 SYNAMISGFARFGRFEEARKLFNEMNDKDEI---TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACAS 308 (654)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (654)
....-++.+.+...++.|..+-+.-..+... ......+-+.+.|++++|...|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 3455677777777788888776654432111 1223334566789999999888776543 233 233444445
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHH
Q 006246 309 LGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEV-FTWNAMIGGLAMHGRADDAIELFFK 387 (654)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 387 (654)
......-..+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+....-.. .-....+..+.+.+-.++|..+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 55555566667777777764 334446788899998888888777766552111 1123344444555555555544433
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006246 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYM 423 (654)
Q Consensus 388 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 423 (654)
... +......+ +-..+++++|.+++..+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 321 22222222 23456666666666544
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.88 E-value=1.6e+02 Score=37.44 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCC--CcchHHHHHHHHHhcCCHHHHHHHHH-hcCCCCHhHHHHHHHHHHhcCC
Q 006246 204 ALIDGYLKCGDIEGAKELFKST----KDK--NTGSYNAMISGFARFGRFEEARKLFN-EMNDKDEITWSAIIDGYTKDGY 276 (654)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~ 276 (654)
++..+=.+++.+..|+..+++- .+. ...-|..+...|+..+++|....+.. +..+++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4445667888999999999884 222 22234555558888888888777776 3444433 244556677899
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH-HHHHHHHHHcCCHHHHHHHHh
Q 006246 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLG-TALVDMYAKCGRLDMAWKVFE 355 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~ 355 (654)
+..|...|+++.+.+ ++...+++.++..-...+.++...-..+...... .+....+ +.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998874 4446778878877777777776665444443322 2222222 222333456666666655544
Q ss_pred hcCCCCHHHHHHH
Q 006246 356 DMKMKEVFTWNAM 368 (654)
Q Consensus 356 ~m~~~~~~~~~~l 368 (654)
..+..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455555544
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.82 E-value=14 Score=35.96 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC-C--------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC
Q 006246 326 SICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM-K--------EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPD 396 (654)
Q Consensus 326 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 396 (654)
|.+....+...++..-....+++++...+-++.. + ..++|--++. .=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 3444444555566666666778888877766653 1 3344443333 3356788888888888899999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 006246 397 RITFACVLSACAHAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 397 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 426 (654)
..|++.++..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888887776653
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.60 E-value=11 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
.-+..+-+..+....+-|+.....+.+.+|.+.+++..|.++|+.++.+.| +....|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 335566667777778899999999999999999999999999999988644 444478877653
No 316
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.44 E-value=1.2e+02 Score=35.66 Aligned_cols=256 Identities=16% Similarity=0.067 Sum_probs=158.3
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcch
Q 006246 219 KELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFV 298 (654)
Q Consensus 219 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (654)
..+...+..+|+.+-..-+..+.+.+..+....+...+.++|...-...+.++.+.+........+..++.. +|...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 355555667888888888999988887665556666666677666556666665543322222334344433 45555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh
Q 006246 299 LSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRA 378 (654)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 378 (654)
-...+.++...+.-+ .. .+-...+ .+|..+-...+.++.+.+..+. +......++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 556666666554222 12 2222222 5567777777777777655432 33344556766666777777777754
Q ss_pred hH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 006246 379 DD-AIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVIS 457 (654)
Q Consensus 379 ~~-A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (654)
+. +...+.++.+ .+|...-...+.++...|..+.+...+..+.+ .++...-..-+.++++.+. ++|...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 43 4555556654 45777777888888888876655444544444 3555566667778888776 45556555
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 458 SMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 458 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
.+-..|+..+-...+.++.+.+....+...+.++++
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 554467887777778888776445567777777665
No 317
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.81 E-value=98 Score=34.37 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=36.5
Q ss_pred hHHHHHHHhcccccCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCC-------chHHHHHHHHhHhCCCCCCcc
Q 006246 66 YVSGTLVKCHANSRFSNFELALKVFNSVH---KPNVFVWNSVLRACLEHNE-------PWRVISLYSEMVGVDSKPNKF 134 (654)
Q Consensus 66 ~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 134 (654)
.+|. +|--+.| ||.+++|.++..... ++....+-..+..|..+.+ -++...-|++..+.....|++
T Consensus 113 p~Wa-~Iyy~LR--~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIWA-LIYYCLR--CGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHHH-HHHHHHT--TT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccHH-HHHHHHh--cCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3443 4444556 999999999993332 3444556677777766532 235555677666543333554
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.51 E-value=2.9 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHH
Q 006246 328 CVDAVLGTALVDMYAKCGRLDMAW 351 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~g~~~~A~ 351 (654)
+.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335556666666666666666654
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.13 E-value=6 Score=35.25 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhcCCCCC-------CchHHHHHHHHHHhcCCc
Q 006246 481 VEFGERLGKILLEMEPQNR-------RCDDVAKMRKLMKERGIK 517 (654)
Q Consensus 481 ~~~a~~~~~~~~~~~p~~~-------~~~~a~~~~~~m~~~g~~ 517 (654)
+++|...|+++.+.+|++. .-+.|-+++..+.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 6777888888888899987 223455666777666653
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.13 E-value=17 Score=32.87 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC---CCHHHHHH
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKMKE------VFTWNAMIGGLAMHGRADDAIELFFKMQREKMR---PDRITFAC 402 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ 402 (654)
..+..+.+-|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678899999999999999999988642 345677888888899999998888877653222 22222222
Q ss_pred HHHH--HHccCCHHHHHHHHHHHHH
Q 006246 403 VLSA--CAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 403 ll~~--~~~~g~~~~a~~~~~~~~~ 425 (654)
+..+ +...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222 3356788888888866544
No 321
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.89 E-value=84 Score=33.05 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 006246 335 TALVDMYAKCGRLDMAWKVFEDMKM--K---EVFTWNAMIGGLAMHGRADDAIELFFKMQ 389 (654)
Q Consensus 335 ~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 389 (654)
..|....-+.|+.++|.+.|.+|.+ | +......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455555666777777777766653 1 22345566777777777777777766653
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.59 E-value=13 Score=36.17 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=73.5
Q ss_pred hCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCC-CCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC
Q 006246 59 SGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVH-KPNV-----FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPN 132 (654)
Q Consensus 59 ~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 132 (654)
.|....+.+...++..-.. ..+++++...+=+.. .|+. .+-.+.++.+. .-++++++.++..=.+-|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~--~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISS--REEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhcccc--ccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 4545556666677776665 678888888776654 2221 11112233333 2367899999988889999999
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 006246 133 KFTYPTVFKACSITEADKEGVQVHAHVVKNG 163 (654)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 163 (654)
.+|++.++..+.+.++...|.++.-.|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877654
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.03 E-value=15 Score=28.93 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 006246 377 RADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVD 441 (654)
Q Consensus 377 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~ 441 (654)
+.-++.+-+..+....+-|+.....+.+.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446666677777778899999999999999999999999999998886433 24456776654
No 324
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.81 E-value=3.2 Score=25.53 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHH
Q 006246 166 GDVHVKSSGIQMYACFGCVNKAR 188 (654)
Q Consensus 166 ~~~~~~~~li~~y~~~g~~~~A~ 188 (654)
.+..+|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555555555555555543
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.67 E-value=5.2 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666543
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.74 E-value=17 Score=30.76 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 006246 468 WEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLM 511 (654)
Q Consensus 468 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m 511 (654)
..-|.-++.+.|++++++++.+.+++.+|+| .+|..+.+.+
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n---~Qa~~Lk~~i 114 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNN---RQALELKETI 114 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHH
Confidence 3346678899999999999999999999987 5666554444
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.67 E-value=19 Score=32.93 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHHHHH
Q 006246 278 KEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAW 351 (654)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~ 351 (654)
++|++.|-++...+.- +....-..+..|-...+.+++++++-.+.+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566666666665533 3333333444444456677777777666653 22556777777777777777777764
No 328
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.16 E-value=69 Score=30.06 Aligned_cols=93 Identities=12% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHcCC-CCCcchHHHHHH---HHHHcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHH-
Q 006246 411 GMIDRGLQALTYMQQMYGI-DPEVEHYGCIVD---LLGRAGYLAEAEEVISSM---PMEPNAAVWEA---LL--GACRK- 477 (654)
Q Consensus 411 g~~~~a~~~~~~~~~~~g~-~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll--~~~~~- 477 (654)
.++++|+..++..-+-+.. ..+...-.|++. .-+..|++.+|+++|++. ....+..-|.. ++ ..|--
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666665543322 222222334433 345678899999999876 22223333321 11 12222
Q ss_pred hCChHHHHHHHHHHHhcCCCCCCchH
Q 006246 478 HGEVEFGERLGKILLEMEPQNRRCDD 503 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~~p~~~~~~~ 503 (654)
..+.-.+.+.+++..+++|.-..-.+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHH
Confidence 36777888899999999998763333
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.08 E-value=7.1 Score=23.49 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666666666666666666655
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.36 E-value=16 Score=33.29 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcC-------CCCChhhHHHHHHHHHHcCCHHHHH
Q 006246 150 KEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDG-------SKSDVICWNALIDGYLKCGDIEGAK 219 (654)
Q Consensus 150 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~ 219 (654)
+.|...|-.+...+.-.++....+|...|. ..+.++|+.++-+. ...|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344444545544444445555555555554 34555555544332 2445666666666667777666664
No 331
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.85 E-value=80 Score=29.67 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=35.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 438 CIVDLLGRA-GYLAEAEEVISSMP-----MEPNAAVWEALLG---ACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 438 ~li~~~~~~-g~~~~A~~~~~~m~-----~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.+.|-.. .+++.|+..|+... .+.+...-..++. --...+++.+|+.+|+++....-++.
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 55666666666551 1222222233332 23456889999999999988666665
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.35 E-value=27 Score=36.12 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=79.3
Q ss_pred HcCChhHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHH
Q 006246 374 MHGRADDAIE-LFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEA 452 (654)
Q Consensus 374 ~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 452 (654)
..|+...|-+ ++.-+....-.|+.+...+.| ..+.|.++.+.+.+..... -+.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3455554443 444444443456665554444 5678888888888877765 3445566778888888888899998
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 453 EEVISSM-PM-EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 453 ~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
...-+.| +. --++.+.......-...|-++++.-.+++++.++|..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888777 21 1244444444455566777888888888888877654
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.17 E-value=6.4 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 006246 437 GCIVDLLGRAGYLAEAEEVIS 457 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~ 457 (654)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 334
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=72.63 E-value=6.8 Score=40.34 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 006246 455 VISSMPMEPN--AAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKL 510 (654)
Q Consensus 455 ~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~ 510 (654)
+|...+++|. ..++.+-++.+.+++|+..|-.+.++++++.|....-+.|.++...
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~ 345 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQA 345 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444456664 4567788888999999999999999999999986444445555443
No 335
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.99 E-value=79 Score=28.81 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=54.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHH--HHHHHHHHHHcCChhH
Q 006246 305 ACASLGALDQGIWIHDHVKRNSICVD--AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFT--WNAMIGGLAMHGRADD 380 (654)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~ 380 (654)
.+...+++++|...++......-+.+ ..+--.|.......|.+|+|+..++....++-.+ -..-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34556667777666666554321111 1122235556677788888888888777664333 3334566777888888
Q ss_pred HHHHHHHHhhcC
Q 006246 381 AIELFFKMQREK 392 (654)
Q Consensus 381 A~~l~~~m~~~g 392 (654)
|..-|++.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888877765
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.62 E-value=1.7e+02 Score=32.61 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=25.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 440 VDLLGRAGYLAEAEEVISSMPM--EPNAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
+..-.+.++++.+...+..|+. .-...-.--+..+....|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333355666666666666531 111222233444545556666666666555
No 337
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.05 E-value=1.7e+02 Score=32.39 Aligned_cols=198 Identities=19% Similarity=0.259 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC----C--CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDK----I--KPR-KFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGT 335 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (654)
+-..++-.|....+++..+++.+.+...- + .++ .+.|...++---+.|+-++|..+.-.+++..-+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va----- 277 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA----- 277 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC-----
Confidence 45566667777888888888888876531 0 011 13344444444556777788777766665431211
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHccCC
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT---FACVLSACAHAGM 412 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~ 412 (654)
=++||-||++ |+.|- +-+.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-.+.
T Consensus 278 --pDm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~-- 336 (1226)
T KOG4279|consen 278 --PDMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH-- 336 (1226)
T ss_pred --Cceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--
Confidence 1345556653 22221 12335555667788999998876 4676543 44444332211
Q ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 413 IDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 413 ~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
++...+ ++. .-..|-..++|.|.++.-.++++-. +.+.+-.-.+++.+|.++.+.++
T Consensus 337 Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 337 FENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred ccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHh
Confidence 111111 111 1123445678999998877777532 23455566789999999999999
Q ss_pred hcCCCCCCchHHHHHHH
Q 006246 493 EMEPQNRRCDDVAKMRK 509 (654)
Q Consensus 493 ~~~p~~~~~~~a~~~~~ 509 (654)
++.|-........+-+.
T Consensus 394 KLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 394 KLKPPVWYLKSTMENIL 410 (1226)
T ss_pred ccCCceehHHHHHHHHH
Confidence 99987654333333333
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.91 E-value=1.5e+02 Score=31.43 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=113.1
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHH
Q 006246 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMI 369 (654)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 369 (654)
..|...+.+++..+.++-...-.+.+..++...| .+-..+-.++..|... ..+.-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466777778888888777777777777777765 3455667788888777 56666777775554 4555555566
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCCCC--CH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 370 GGLAMHGRADDAIELFFKMQREKMRP--DR---ITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~g~~p--~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
.-|-+ ++.+.+..+|.++...=++- +. ..|..+... -..+.|.-.++...+.+..|..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 77788888888877652221 11 133333321 145677777777777776666666666666667777
Q ss_pred HcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 006246 445 RAGYLAEAEEVISSMP--MEPNAAVWEALLGAC 475 (654)
Q Consensus 445 ~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 475 (654)
...++++|++++...- ...|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7888888888887651 223444444444433
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.50 E-value=9.5 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCHHHHHHHHh
Q 006246 336 ALVDMYAKCGRLDMAWKVFE 355 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~ 355 (654)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666554
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.32 E-value=31 Score=27.26 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCchhHHHHHHH
Q 006246 277 YKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR-NSICVDAVLGTALVD 339 (654)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 339 (654)
.-++.+-++.+....+.|+.....+.|.||.+.+++..|..+++-++. .|. +...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 335556667777778888888888999999999999999888887763 332 3335555443
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.18 E-value=1.1e+02 Score=29.32 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCCcchHHHHHHHH-HhCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHHHHhccCCcHHHHHHHHHHH
Q 006246 95 KPNVFVWNSVLRAC-LEHNEPWRVISLYSEMVGVDSKPNKF---TYPTVFKACSITEADKEGVQVHAHVV 160 (654)
Q Consensus 95 ~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~ 160 (654)
+||+..-|..-.+- .+...+++|+.-|++..+..-.-... .+-.+++...+.+++++....+.+++
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 56665444332211 12336677777777766532122222 22233444445555555554444443
No 342
>PRK10941 hypothetical protein; Provisional
Probab=68.48 E-value=39 Score=32.83 Aligned_cols=77 Identities=6% Similarity=-0.028 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 006246 437 GCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKMRKLMKE 513 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~~~~m~~ 513 (654)
+.+-.+|.+.++++.|+.+.+.+ .+.| |+.-|.--+-.|.+.|.+..|..-++..++..|+++.-+..+...+.|++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 34556788889999999988887 3445 56677777888999999999999999999999998644444444444443
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.79 E-value=1.7e+02 Score=30.97 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=125.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 260 DEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
|-...-+++..+.++-.+.-...+..+|+.-| .+...|..++..|... .-+.-..+++++++..+. |+....-|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45566788899999999999999999999865 4667888999999888 567778899998887654 5566667788
Q ss_pred HHHHcCCHHHHHHHHhhcCCC------CH---HHHHHHHHHHHHcCChhHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHc
Q 006246 340 MYAKCGRLDMAWKVFEDMKMK------EV---FTWNAMIGGLAMHGRADDAIELFFKMQR-EKMRPDRITFACVLSACAH 409 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~ 409 (654)
-|-+ ++.+.+...|.++..+ +. ..|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7777 8888998888877542 11 3677666421 3456777777777765 3444455667777788999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 006246 410 AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDL 442 (654)
Q Consensus 410 ~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~ 442 (654)
..++++|++++..+.+. -..|.-.-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 99999999999988872 23344343444443
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.50 E-value=70 Score=30.89 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=57.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH-
Q 006246 369 IGGLAMHGRADDAIELFFKMQR--EKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR- 445 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~- 445 (654)
|.+++..+++.+++...-+--+ +.++|...-. -|-.|++.|......++-...... .-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6778888888888765444322 2344444333 344578888888888777777663 223334458887777664
Q ss_pred ----cCCHHHHHHHHHhC
Q 006246 446 ----AGYLAEAEEVISSM 459 (654)
Q Consensus 446 ----~g~~~~A~~~~~~m 459 (654)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 68999999888543
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.23 E-value=34 Score=31.13 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=15.1
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 006246 270 GYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~ 290 (654)
-+..+|++++|..-|...+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 456677788887777777765
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.09 E-value=13 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 347
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.86 E-value=96 Score=33.38 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQAL 420 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 420 (654)
..+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34567777777765543 3556788888888888888888887776654 345555666666655433333
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006246 421 TYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP 460 (654)
Q Consensus 421 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (654)
....+. |. .|.-.-+|...|+++++.+++.+-.
T Consensus 716 ~~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 716 SLAKKQ-GK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 333332 21 2223345667788888887777653
No 348
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.66 E-value=49 Score=30.21 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=21.7
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 473 GACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
.+|-+...++.|+.-|+++++.+|..
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 45667778899999999999999986
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.16 E-value=69 Score=25.90 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 006246 148 ADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD 227 (654)
Q Consensus 148 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (654)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|.. .+.|.-+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777766542 333333344445667777777744444456677777776654 466666666666665544
Q ss_pred C
Q 006246 228 K 228 (654)
Q Consensus 228 ~ 228 (654)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.67 E-value=8.9 Score=25.32 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHHHHHHhCChHHHHHHHHHHHh
Q 006246 471 LLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
|..+|...|+.+.|..+++.+++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 55677777777777777777774
No 351
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.21 E-value=73 Score=25.79 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 311 ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 56778888888777653 233333344556778899999955555556688888877654 577888888888888877
Q ss_pred cCCCCCHHHH
Q 006246 391 EKMRPDRITF 400 (654)
Q Consensus 391 ~g~~p~~~t~ 400 (654)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4444444
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.98 E-value=2.2e+02 Score=31.22 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCC-CHhHHHHHHHH-----HHhcCChHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhcC--
Q 006246 246 FEEARKLFNEMNDK-DEITWSAIIDG-----YTKDGYYKEALEVFNEMQR-------DKIKPRKFVLSCVLAACASLG-- 310 (654)
Q Consensus 246 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 310 (654)
...|.+.++...+. ++..-..+... +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655543 33322222222 3345677777777777755 44 2334445555555532
Q ss_pred ---ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc---CCHHHHHHHHhhcCCC-CHHHHHHHHHHHH----HcCChh
Q 006246 311 ---ALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKC---GRLDMAWKVFEDMKMK-EVFTWNAMIGGLA----MHGRAD 379 (654)
Q Consensus 311 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~m~~~-~~~~~~~li~~~~----~~g~~~ 379 (654)
+.+.|..++....+.|. |+.... |...|... .+...|.+.|...... .+.+.-.+...|. ...+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 45567777777777763 333332 33333322 3466777777766653 3333322222222 223577
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
.|..++++..+.| .|-..--...+..+.. +.++.+...+..+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7888888877776 3332222233333333 555555555555544
No 353
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.25 E-value=2e+02 Score=30.44 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 006246 348 DMAWKVFEDMKMKEVFTW-NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA--HAGMIDRGLQALTYMQ 424 (654)
Q Consensus 348 ~~A~~~~~~m~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 424 (654)
+.....+..+..++++++ +..+.-+.+.|-..+|...|..+... .+|+..-|..++.--. .+-++.-++.+++.|.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334455566666666655 55677777888899999999999876 4566777777765322 1223778899999999
Q ss_pred HHcCCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 006246 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVI 456 (654)
Q Consensus 425 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 456 (654)
..+| .|+..|...+..=...|+.+.+-.++
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHH
Confidence 9888 56666655554444555555544443
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.62 E-value=27 Score=21.89 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCChHHHHHH--HHHHHhcCCCC
Q 006246 467 VWEALLGACRKHGEVEFGERL--GKILLEMEPQN 498 (654)
Q Consensus 467 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 498 (654)
-|-.+...+...|++++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456677788899999999999 44777777764
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.49 E-value=1.5e+02 Score=28.89 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 006246 437 GCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
+.....|..+|.+.+|.++.++. ...| +...|..|+..+...||--.+.+-++++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456788899999999999987 4444 78889999999999999877877777663
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.69 E-value=1.1e+02 Score=31.47 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=62.5
Q ss_pred HHHcCChhHHHHHHHHHhhcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHHHcCCC--CCcchHHHHHHHHHH
Q 006246 372 LAMHGRADDAIELFFKMQREKMRPDRI--TFACVLSACA--HAGMIDRGLQALTYMQQMYGID--PEVEHYGCIVDLLGR 445 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~~g~~--p~~~~~~~li~~~~~ 445 (654)
+...+++..|.++|.++... ++++.. .+..+..+|. ..-++++|.+.++..... ... -....+..++...-.
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHH
Confidence 34678888999999988876 555554 3344444443 456778888888887663 111 011222222222222
Q ss_pred cCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHH--HhCChHHHHHHHHHHHh
Q 006246 446 AGYLAEAEEVISSMPMEPN-AAVWEALLGACR--KHGEVEFGERLGKILLE 493 (654)
Q Consensus 446 ~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 493 (654)
...+.........-..++. ..+...+.++-+ ..|+++.|...+-+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2122111111111111111 233344445554 36889999888777777
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=62.27 E-value=1.1e+02 Score=26.66 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=10.9
Q ss_pred HHHcCCHHHHHHHHhhcCCC
Q 006246 341 YAKCGRLDMAWKVFEDMKMK 360 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~~ 360 (654)
+...|++++|..+|+++...
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455556666555555543
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.78 E-value=4.5e+02 Score=33.78 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC----CCCC-hhhHH-HHHHHHHHcCCHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCC
Q 006246 173 SGIQMYACFGCVNKARQILDDG----SKSD-VICWN-ALIDGYLKCGDIEGAKELFKS-TKDKNTGSYNAMISGFARFGR 245 (654)
Q Consensus 173 ~li~~y~~~g~~~~A~~~~~~~----~~~~-~~~~~-~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 245 (654)
.|..+-.+|+.+..|...+++- .+.+ ...+. .+...|..-++++....+... ...++ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667889999999888873 1111 12223 333377777777776666553 22222 2334455677899
Q ss_pred HHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHH-HHHHHhcCChhHHHHHHH
Q 006246 246 FEEARKLFNEMNDKD---EITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV-LAACASLGALDQGIWIHD 320 (654)
Q Consensus 246 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~ 320 (654)
+.+|...|+.+.+.+ ...++-++......|.++.++-..+-.... ..+....++++ +.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998643 456787777777777777776654443332 12222222222 333356677776666555
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.27 E-value=2.7e+02 Score=30.99 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=94.4
Q ss_pred HHHHHHHHHHH-hCCCC--chhHHHHHHHhcccccCCChHHHHHHHhcCC----CCCcc-----hHHHHHHHHHhCCCch
Q 006246 48 HLKQAHAVILK-SGHFQ--DHYVSGTLVKCHANSRFSNFELALKVFNSVH----KPNVF-----VWNSVLRACLEHNEPW 115 (654)
Q Consensus 48 ~a~~~~~~~~~-~g~~~--~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~ 115 (654)
.|.+.+..+++ ..+.| +..++-.+...|... ..+++.|+..+++.. +++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45555666663 22333 345566666766632 678999999988764 22221 1234455566655444
Q ss_pred HHHHHHHHhHhCC----CCCCcccHHHH-HHHHhccCCcHHHHHHHHHHHHhC---CCCChhhHHHHHHHH--HhcCCHH
Q 006246 116 RVISLYSEMVGVD----SKPNKFTYPTV-FKACSITEADKEGVQVHAHVVKNG---LCGDVHVKSSGIQMY--ACFGCVN 185 (654)
Q Consensus 116 ~A~~~~~~m~~~g----~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y--~~~g~~~ 185 (654)
|+...++..+.- ..+-...|..+ +..+...++...|.+.++.+...- -.+...+.-.++.+. .+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888776531 11222233333 222223378888888888776542 133344444444433 2445455
Q ss_pred HHHHHHhcC-------------CCCChhhHHHHHHH--HHHcCCHHHHHHHHHhcC
Q 006246 186 KARQILDDG-------------SKSDVICWNALIDG--YLKCGDIEGAKELFKSTK 226 (654)
Q Consensus 186 ~A~~~~~~~-------------~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 226 (654)
++.+.+++. ..|...+|..+++. +...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555432 12234456666554 456677667666665543
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.20 E-value=27 Score=34.43 Aligned_cols=108 Identities=12% Similarity=-0.020 Sum_probs=71.4
Q ss_pred HHHHHHcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC---
Q 006246 338 VDMYAKCGRLDMAWKVFEDMKM--K-EVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG--- 411 (654)
Q Consensus 338 i~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--- 411 (654)
.+-|.++|.+++|+..|..... | |.+.+..-..+|.+..++..|..=....+..+ ...+.+|++.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 5678999999999999987664 4 88999999999999999988877666665432 12455666554
Q ss_pred ----CHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 412 ----MIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 412 ----~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+..+|.+-.+... .+.|.. +-|-..|.+...+.|+.-+...-
T Consensus 176 ~~Lg~~~EAKkD~E~vL---~LEP~~---~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVL---ALEPKN---IELKKSLARINSLRERKIATKST 221 (536)
T ss_pred HHHhhHHHHHHhHHHHH---hhCccc---HHHHHHHHHhcchHhhhHHhhcC
Confidence 4444444444443 346662 33445555656666655444443
No 361
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=61.12 E-value=45 Score=26.69 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006246 279 EALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD 339 (654)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (654)
+..+-++.+....+.|++....+.|.+|.+.+++..|..+++-++..- ......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445556666667788888888888888888888888888888776542 122225655554
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.86 E-value=32 Score=36.58 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=76.5
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM-P-MEPNAAVWEALLGACRKHGEVEFG 484 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a 484 (654)
-.|+...|...+..... ..|. ....-.|.+.+.+.|...+|-.++.+. . ....+.++-.+++++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 45788888888776654 2332 234456777788888888888887654 2 234577888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 006246 485 ERLGKILLEMEPQNRRCDDVAKMRKLMKE 513 (654)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~a~~~~~~m~~ 513 (654)
++.++++++++|++...++-......|.-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c~~~ 724 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRCMQF 724 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhhh
Confidence 99999999999999866666665555543
No 363
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.57 E-value=2e+02 Score=28.98 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEP------NAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
..+|..+.....+.|+++.|...+.++.... ++.+.-.-.......|+.++|...++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666777777777777666652110 233333445556666777777777666665
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.07 E-value=1.1e+02 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.68 E-value=2.6e+02 Score=29.31 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 006246 365 WNAMIGGLAM---HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAG 411 (654)
Q Consensus 365 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 411 (654)
+..+++++.+ .++.+.|+.++.+|.+.|..|..+.-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555554 4788999999999999998887766655555554444
No 366
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.38 E-value=55 Score=25.35 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCh
Q 006246 244 GRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYY 277 (654)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (654)
|+.+.|.+++..++ +..-.|...+.++-..|..
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 44444444444444 4444444444444444443
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.25 E-value=76 Score=29.47 Aligned_cols=125 Identities=23% Similarity=0.220 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCC----cchHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPE----VEHYGCI 439 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~----~~~~~~l 439 (654)
|.+.-++.+.+.+...+|+.+.++=.+.. +-|.-+-..++..++-.|++++|..-++..-+ +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34566788889999999999988877763 33556777888999999999999988877654 3443 4455555
Q ss_pred HHHHHHcCCHHHHH-HHHHhC--C---CCCCHHHHHHHHHHHHH--hCChHHHHHHHHHHHhcCCCCC
Q 006246 440 VDLLGRAGYLAEAE-EVISSM--P---MEPNAAVWEALLGACRK--HGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 440 i~~~~~~g~~~~A~-~~~~~m--~---~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
|..- .+. ++|..- | .-|.+.-...|+.+..- -|.-+.+..+-+++++..|..+
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5422 222 234321 2 11333333444444433 3455667777788888777765
No 368
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.19 E-value=1.4e+02 Score=26.01 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=57.7
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCChHHHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVE-HYGCIVDLLGRAGYLAEAEEVISSMPMEP-NAAVWEALLGACRKHGEVEFGER 486 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 486 (654)
..++.+++..++..|.- +.|+.. .-..-+..+...|++++|..+|++....+ ....-..|+.-|.....-..=..
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 46777888888877764 344422 22233445678888888888888885333 33334455555555444444455
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHH
Q 006246 487 LGKILLEMEPQNRRCDDVAKMRKLMK 512 (654)
Q Consensus 487 ~~~~~~~~~p~~~~~~~a~~~~~~m~ 512 (654)
..+.+++-+++ .++..+.+.+.
T Consensus 99 ~A~~~le~~~~----~~a~~Lv~al~ 120 (153)
T TIGR02561 99 HADEVLARDAD----ADAVALVRALL 120 (153)
T ss_pred HHHHHHHhCCC----HhHHHHHHHHh
Confidence 66666666555 35555555555
No 369
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.74 E-value=17 Score=33.78 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=48.0
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 442 LLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+..+.|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455678888888888877 3334 578898888888999999999999999999999885
No 370
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.72 E-value=37 Score=38.01 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=74.1
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHH
Q 006246 375 HGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 375 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 454 (654)
+.++++.+.+.+...--|. ++|.-+.+.|-.+-|+.+.+.=... .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvGq--------aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQ--------AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCcccH--------HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 4556666665544332221 2344445666666665544332222 123457899999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC---CchHHHHHHHHHHhcCCccC
Q 006246 455 VISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR---RCDDVAKMRKLMKERGIKTN 519 (654)
Q Consensus 455 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~a~~~~~~m~~~g~~~~ 519 (654)
.-.+.. |..+|..|+..-..+|+.+.|+..|++....+.=.. --....++.++|+-..++.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D 729 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRND 729 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhh
Confidence 888765 788899999999999999999999988765332221 12235556666655544444
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.40 E-value=2.6e+02 Score=28.65 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=47.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH-HcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHH
Q 006246 405 SACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG-RAGYLAEAEEVISSMPM---------EPNAAVWEALLGA 474 (654)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~---------~p~~~~~~~ll~~ 474 (654)
..+.+.|-+.-|.++.+-+..- .-.-|+..-..+|+.|+ ++++++--+++++.... -|+ ..|+..+.-
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSL-DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHHH
Confidence 3455556666666666555431 21113333344455543 55566655555554321 121 233333333
Q ss_pred HHHhCCh---------------HHHHHHHHHHHhcCCC
Q 006246 475 CRKHGEV---------------EFGERLGKILLEMEPQ 497 (654)
Q Consensus 475 ~~~~g~~---------------~~a~~~~~~~~~~~p~ 497 (654)
...++. +.|...+++++...|.
T Consensus 189 -~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 -FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 333444 8899999999987775
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.98 E-value=42 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 006246 462 EPNAAVWEALLGACRKHGEVEFGERLGKILLEMEP 496 (654)
Q Consensus 462 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 496 (654)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555555
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.84 E-value=2.2e+02 Score=27.80 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----HcCCCCCcch
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQ----MYGIDPEVEH 435 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~g~~p~~~~ 435 (654)
+.....|...|.+.+|.++-++.+... +.+...+-.++..+...|+--.+...++.+.+ .+|+..+-..
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 334455666677777777666666542 33555555666666666665555555544432 2455554433
No 374
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=53.74 E-value=1.9e+02 Score=26.95 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh-HHHHHHH--HHHhcCChHHHHHHHHHHHhC
Q 006246 230 TGSYNAMISGFARFGRFEEARKLFNEMNDKDEI-TWSAIID--GYTKDGYYKEALEVFNEMQRD 290 (654)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 290 (654)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 345666666667777777777777776654432 1222211 122346666666655555444
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.39 E-value=29 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHHcCChhHHHHHHHHHhh
Q 006246 369 IGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 369 i~~~~~~g~~~~A~~l~~~m~~ 390 (654)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555543
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.66 E-value=39 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=44.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 404 LSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 404 l~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+.......+.+......+.+.+.....|+...|..++.++...|+.++|.+..+++
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334666666666666666665567899999999999999999999999999988
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.46 E-value=1.1e+02 Score=27.60 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhcCCCCCH-HHHHHHHHHHHcc
Q 006246 380 DAIELFFKMQREKMRPDR-ITFACVLSACAHA 410 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~ 410 (654)
+|+.-|++.+. +.|+. .++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 34444444444 35554 3555555555443
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.34 E-value=56 Score=28.22 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHhCCCCch--hHHHHHHHhcccccCCChHHHHHHHhcCC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHh
Q 006246 57 LKSGHFQDH--YVSGTLVKCHANSRFSNFELALKVFNSVH---------KPNVFVWNSVLRACLEHNE-PWRVISLYSEM 124 (654)
Q Consensus 57 ~~~g~~~~~--~~~~~Li~~y~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 124 (654)
.+.+..++. ...|++++-.+. .+++.-...+++.+. ..+-.+|+.++.+.++... ---+..+|.-|
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~--~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLAS--YQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 334444443 456777777666 677877777777765 2455678888888866655 34577788888
Q ss_pred HhCCCCCCcccHHHHHHHHhcc
Q 006246 125 VGVDSKPNKFTYPTVFKACSIT 146 (654)
Q Consensus 125 ~~~g~~p~~~t~~~ll~~~~~~ 146 (654)
.+.+.+++..-|..++++|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 8877888888888888887654
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.04 E-value=1.3e+02 Score=29.06 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQR--DKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAK- 343 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~- 343 (654)
=|.+++..++|.+++...-+--+ ..++|. ....-|-.|++.+.+....++-..-.+..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 46777777888777765443322 122332 2222333455666666555555544443222223335555544433
Q ss_pred ----cCCHHHHHHHH
Q 006246 344 ----CGRLDMAWKVF 354 (654)
Q Consensus 344 ----~g~~~~A~~~~ 354 (654)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35555555544
No 380
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.98 E-value=3.2e+02 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.136 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006246 435 HYGCIVDLLGRAGYLAEAEEVISSMP 460 (654)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (654)
+-...+.++++.|+..-+.-+++.|.
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 33445555566666655555555554
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.63 E-value=22 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 006246 111 HNEPWRVISLYSEMVGVDSKPNKFTYPTVFKAC 143 (654)
Q Consensus 111 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 143 (654)
.|.-..|-.+|++|+++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45667899999999999988885 67777654
No 382
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.39 E-value=3.3e+02 Score=28.45 Aligned_cols=172 Identities=10% Similarity=-0.042 Sum_probs=81.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCH
Q 006246 105 LRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYACFGCV 184 (654)
Q Consensus 105 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 184 (654)
|.++...| ..++..+....... ++...+.....++... +-..+.+.+-... ..++..+....+..+.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~-~~~~~~~~L~~~L---~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQ-EDALDLRSVLAVL---QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhcc-CChHHHHHHHHHh---cCCCHHHHHHHHHHHhcCCch
Confidence 55666666 45666665555332 2233333333333222 2222222222222 234555666666666666665
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH
Q 006246 185 NKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITW 264 (654)
Q Consensus 185 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 264 (654)
.....+.......+...-.+.+.++...+. +-...+..-+..+|..+-..-+.++...+..+..-.+-......|...-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 555555554444555444444455444331 1112222223345555556666666666554444333333444555555
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 006246 265 SAIIDGYTKDGYYKEALEVFNE 286 (654)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~ 286 (654)
..-+.+....|. .+|...+..
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHH
Confidence 555666666666 455554444
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.13 E-value=4.3e+02 Score=29.63 Aligned_cols=205 Identities=13% Similarity=-0.034 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 006246 274 DGYYKEALEVFNEMQRDK-IKPRKF--VLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMA 350 (654)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 350 (654)
..+.+.|..++....... ..+... ....+.......+...++...+....... .+..+...-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345688888888765432 222221 12222222222222445555555443322 2334444555555678899988
Q ss_pred HHHHhhcCCC--CH-HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHHH
Q 006246 351 WKVFEDMKMK--EV-FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRG-LQALTYMQQM 426 (654)
Q Consensus 351 ~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 426 (654)
...+..|... +. .-.-=+..++...|+.++|...|+++... .+|..++.+ .+.|..-.- ......-...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCchhhh
Confidence 8888888652 22 22233566667789999999999887431 245555432 222311000 0000000000
Q ss_pred cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 427 YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 427 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
..-.| --.-+..+...|+..+|...+..+-...+......+...-...|..+.++....+.
T Consensus 405 ~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 405 LTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00001 11224566778999999888877633355566666666677888888888776544
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=2.6e+02 Score=27.19 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=83.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcch-------HHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCchhHHHH
Q 006246 268 IDGYTKDGYYKEALEVFNEMQRDKIKPRKFV-------LSCVLAACASLGALDQGIWIHDHV----KRNSICVDAVLGTA 336 (654)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~ 336 (654)
.+-.++.+++++|+..+.+.+..|+..|..+ ...+...|...|+...-.+..... ....-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3344566777777777777777776665433 334555566666654443333222 11122223445556
Q ss_pred HHHHHHHc-CCHHHHHHHHhhcCC----CC-----HHHHHHHHHHHHHcCChhHHHHHHH----HHhhcCCCCCHHHHHH
Q 006246 337 LVDMYAKC-GRLDMAWKVFEDMKM----KE-----VFTWNAMIGGLAMHGRADDAIELFF----KMQREKMRPDRITFAC 402 (654)
Q Consensus 337 li~~y~~~-g~~~~A~~~~~~m~~----~~-----~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~g~~p~~~t~~~ 402 (654)
|++.+... ..++.-..+.....+ .+ ...-.-+|..+.+.|++.+|+.+.. +..+..-+|+.++...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 66665433 235555555444332 11 1122346788899999999987654 4444555676665443
Q ss_pred HH-HHHHccCCHHHHHHHHHHH
Q 006246 403 VL-SACAHAGMIDRGLQALTYM 423 (654)
Q Consensus 403 ll-~~~~~~g~~~~a~~~~~~~ 423 (654)
+= .+|-...++.++..-+...
T Consensus 170 lESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHH
Confidence 32 2444455555555444443
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.98 E-value=33 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=8.6
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 006246 436 YGCIVDLLGRAGYLAEAEE 454 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~ 454 (654)
..+|+.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 386
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.94 E-value=2.2e+02 Score=25.96 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHcCC--------------CCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMYGI--------------DPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+++..|.+.-++.+++++++.+.+. .+ .+.-..-|.-...+.+.|.+|.|+.++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34666777888888998888888652 22 122334556667777888888888888764
No 387
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.76 E-value=5.3e+02 Score=30.34 Aligned_cols=260 Identities=15% Similarity=0.051 Sum_probs=150.2
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhcCCCCHhHHHH
Q 006246 188 RQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFARFGRF-EEARKLFNEMNDKDEITWSA 266 (654)
Q Consensus 188 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 266 (654)
..+.+.+..+|+..-...+..+.+.+..+-...+...+..+|..+-...+.++.+.+.. .....+...+..+|...-..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 34445556778877777788888887655444455555557776666666666655332 12223333444566665556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 267 IIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
.+.++...+..+ ...+. ++++ .+|...-...+.++.+.+..+. + ...--.++..+-...+.++...+.
T Consensus 704 A~~aL~~~~~~~-~~~l~-~~L~---D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 704 ALDVLRALRAGD-AALFA-AALG---DPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHhhccCC-HHHHH-HHhc---CCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHHHhcc
Confidence 666666544222 12222 2332 3444444555666665544322 1 122235567777778888887776
Q ss_pred HHH-HHHHH-hhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006246 347 LDM-AWKVF-EDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 347 ~~~-A~~~~-~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 424 (654)
.+. +...+ .-+..+|...-.+.+.++...|..+.+...+..+++ .+|...-...+.++...+. +++...+..+.
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 443 23333 334567888888888999999887666555666654 3466666667777777765 34556665555
Q ss_pred HHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH
Q 006246 425 QMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAV 467 (654)
Q Consensus 425 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 467 (654)
+ .|+...-..-+.++++.+....+...+...-.++|..+
T Consensus 848 ~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 848 T----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred c----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 4 46666666777777775333345555554433445443
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.19 E-value=1.2e+02 Score=23.59 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=26.9
Q ss_pred HcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 006246 343 KCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAI 382 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 382 (654)
..|+.+.|++++..+. +....|..++.++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66677777777777776655443
No 389
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.09 E-value=1.2e+02 Score=25.40 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 380 DAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 380 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+..+-+.......+-|+......-+.+|-+.+++..|.++|+-++.+ ..+....|..+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 44455566666778999999999999999999999999999998874 3344445666654 334555555
Q ss_pred C
Q 006246 460 P 460 (654)
Q Consensus 460 ~ 460 (654)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.78 E-value=1.6e+02 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888776
No 391
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.28 E-value=2.6e+02 Score=26.39 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHcCChhHHHHHHHHHhhcCCC-CCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCC
Q 006246 372 LAMHGRADDAIELFFKMQREKMR-PDRI--TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGY 448 (654)
Q Consensus 372 ~~~~g~~~~A~~l~~~m~~~g~~-p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 448 (654)
....|+++.|+++.+-+++.|.. |+.+ ++-+++. |+....-....+. |-..++.....+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~a-g~~~e~~~~~~~--------- 154 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASA-GESVEPYFLRVF--------- 154 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHc-CCCCChHHHHHH---------
Confidence 35678899999999988887743 4332 2222221 2222222222221 333232221111
Q ss_pred HHHHHHHHH--hCCCCCCHHHHHHHHHHHH---------HhCChHHHHHHHHHHHhcCCCCC
Q 006246 449 LAEAEEVIS--SMPMEPNAAVWEALLGACR---------KHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 449 ~~~A~~~~~--~m~~~p~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..+-+ .|+.+.....|..++..+. ..++++.|...++++++++|+..
T Consensus 155 ----~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 155 ----LDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred ----HHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 11222 2333334555666666663 44678899999999999999875
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.27 E-value=58 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=29.3
Q ss_pred HcCChhHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHccCCHHHHHHH
Q 006246 374 MHGRADDAIELFFKMQREKMRPDR--ITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 374 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
...+.++|+..|+..++.-..|.. .++..++.+++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777665333322 3666777777777777766544
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.90 E-value=2.9e+02 Score=26.75 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006246 329 VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACA 408 (654)
Q Consensus 329 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 408 (654)
.|+.....+...|.+.|++.+|+.-|-.-..++...+-.++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46778888999999999999998877554444333332233322223332222 222222233 344
Q ss_pred ccCCHHHHHHHHHHHHHH
Q 006246 409 HAGMIDRGLQALTYMQQM 426 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~ 426 (654)
-.+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888877777653
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.74 E-value=89 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhc
Q 006246 470 ALLGACRKHGEVEFGERLGKILLEM 494 (654)
Q Consensus 470 ~ll~~~~~~g~~~~a~~~~~~~~~~ 494 (654)
.+.......|+.++|...+++++++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445567778888888888877764
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.32 E-value=1.9e+02 Score=27.05 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCCCC---CHHHH--HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHH
Q 006246 365 WNAMIGGLAMHGRADDAIELFFKMQREKMRP---DRITF--ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCI 439 (654)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~l 439 (654)
.|.|+--|.-+..+.+|.+.|.+ ..|+.| |..++ ..-+......|++++|++........ -+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 44555555555555555555533 233433 22222 23344555666666666666655432 223332222222
Q ss_pred H----HHHHHcCCHHHHHHHHHh
Q 006246 440 V----DLLGRAGYLAEAEEVISS 458 (654)
Q Consensus 440 i----~~~~~~g~~~~A~~~~~~ 458 (654)
. --+.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 124467777777777654
No 396
>PF15161 Neuropep_like: Neuropeptide-like
Probab=44.31 E-value=13 Score=25.46 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=12.3
Q ss_pred ccccCcchhhHHHhHhhh
Q 006246 610 NLRVCEDCHSATKLISKV 627 (654)
Q Consensus 610 ~l~~c~~~h~~~~~~s~~ 627 (654)
--|-|.|||.+. |+.+.
T Consensus 12 esRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCchhhHHHH-HHHHH
Confidence 357799999776 66654
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.54 E-value=3.1e+02 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=9.3
Q ss_pred HHhcCChHHHHHHHHHHH
Q 006246 271 YTKDGYYKEALEVFNEMQ 288 (654)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~ 288 (654)
|.-.++...|..++....
T Consensus 151 yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 444555555555554444
No 398
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.33 E-value=40 Score=24.22 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006246 247 EEARKLFNEMND--KDEITWSAIIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 247 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
+...++++.+.. .|..-.-.+|.+|.+.|++++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444432 2444455677778888888888877777654
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.00 E-value=26 Score=29.59 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=25.5
Q ss_pred HHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006246 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLSAC 407 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 407 (654)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456677899999999999988876 66666654
No 400
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.87 E-value=4.1e+02 Score=28.15 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHcCCHHHHHHHHhhcCC---------C---CHHHHHHHHHHHHHcCChhHHHHHHHHHhh-------cCCCCC----
Q 006246 340 MYAKCGRLDMAWKVFEDMKM---------K---EVFTWNAMIGGLAMHGRADDAIELFFKMQR-------EKMRPD---- 396 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~---------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~---- 396 (654)
.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456888999888765431 1 234678888888888888888888887764 455553
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 006246 397 -------RITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLG 444 (654)
Q Consensus 397 -------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~ 444 (654)
..+|+. .-.+.+.|+.-.|.+.|......| ..++..|-.|.++|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 223433 235667888888888888877753 444556777766654
No 401
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.84 E-value=3.7e+02 Score=27.74 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 332 VLGTALVDMYAKCGRLDMAWKVFEDMKM------KEVFTWNAMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 332 ~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
....-+.+-|..||+++.|.+.|.+... .-+..|-.+|..-.-.|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3556788889999999999999998654 13346777777777788998888888887764
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.74 E-value=4e+02 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=21.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006246 297 FVLSCVLAACASLGALDQGIWIHDHVKR 324 (654)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (654)
..+.-+..-|...|+++.|.+.|.++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 3556677778888999999888888554
No 403
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.62 E-value=5.7e+02 Score=29.27 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHHHHHc
Q 006246 328 CVDAVLGTALVDMYAKC 344 (654)
Q Consensus 328 ~~~~~~~~~li~~y~~~ 344 (654)
..++.++|.++..|++.
T Consensus 625 ~~~~~ihn~ll~lya~~ 641 (911)
T KOG2034|consen 625 MTNPAIHNSLLHLYAKH 641 (911)
T ss_pred CcCHHHHHHHHHHhhcC
Confidence 44566667777776654
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.80 E-value=6.1e+02 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQR 289 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (654)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777778888888888888877765
No 405
>PRK12798 chemotaxis protein; Reviewed
Probab=41.66 E-value=4.2e+02 Score=27.46 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=105.0
Q ss_pred cCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHccCCHH
Q 006246 344 CGRLDMAWKVFEDMKMK----EVFTWNAMIGGLAM-HGRADDAIELFFKMQREKMRPD----RITFACVLSACAHAGMID 414 (654)
Q Consensus 344 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~ 414 (654)
.|+.++|.+.|..+... ....+-.|+.+-.. ..+..+|+++|++..-. -|- .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999888753 45567677666444 45789999999987643 343 234444455677889999
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHH-HHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 006246 415 RGLQALTYMQQMYGIDPEVEHYGC-IVDLLGR---AGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKI 490 (654)
Q Consensus 415 ~a~~~~~~~~~~~g~~p~~~~~~~-li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 490 (654)
++..+-......|.-.|=...|.. ++..+.+ ....+.-..++..|.-.--..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777776655554433322 2333333 334455556666664222367888888889999999999999999
Q ss_pred HHhcCCCCC
Q 006246 491 LLEMEPQNR 499 (654)
Q Consensus 491 ~~~~~p~~~ 499 (654)
++.+.....
T Consensus 283 A~~L~~~~~ 291 (421)
T PRK12798 283 ALKLADPDS 291 (421)
T ss_pred HHHhccCCC
Confidence 999875544
No 406
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.16 E-value=4.3e+02 Score=28.46 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC--CHH---HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 336 ALVDMYAKCGRLDMAWKVFEDMKMK--EVF---TWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 336 ~li~~y~~~g~~~~A~~~~~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
.|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-..+....++.++.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5777899999999999999888742 222 333344444444444555555555544
No 407
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.66 E-value=2e+02 Score=24.17 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=41.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCChHHHHHHHHHHH
Q 006246 432 EVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW-EALLGACRKHGEVEFGERLGKILL 492 (654)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 492 (654)
...+-.++.-++.-.|..++|.++++..+.-++-... .-++..|....+-++..++-++.+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3445566777777888888888888888655554443 457888888877766666555443
No 408
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.78 E-value=1.2e+02 Score=23.42 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHH
Q 006246 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEA 280 (654)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (654)
++..+.+.++.+....-...+...+.+.|.++++.++.+...+|.....++...|...-|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 344444444444444444444555666677777777766666666666666666554433
No 409
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.77 E-value=3.3e+02 Score=25.68 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhc
Q 006246 166 GDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKCGDIEGAKELFKSTKD--KNTGSYNAMISGFARF 243 (654)
Q Consensus 166 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 243 (654)
|....--.-.-.+...++++.|.+.+-..... ..-..-++..+...|+.+.|+.+++.+.. .+......++.. ..+
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHc
Q ss_pred CCHHHHHHHHHhcCCCC-HhHHHHHHHHHH----hcCChHHHHHH
Q 006246 244 GRFEEARKLFNEMNDKD-EITWSAIIDGYT----KDGYYKEALEV 283 (654)
Q Consensus 244 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~g~~~~A~~~ 283 (654)
+.+.+|...-+...++. ...+..++..+. +.+..++-+.+
T Consensus 154 ~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred CCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 410
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=38.48 E-value=13 Score=26.90 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=17.0
Q ss_pred ceEEEecCCccccccCccccCC
Q 006246 630 RDIIVRDRVRYHHFRNGKCSCN 651 (654)
Q Consensus 630 ~~~~~~d~~~~h~f~~g~csc~ 651 (654)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 3567889999999999997643
No 411
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.73 E-value=3.2e+02 Score=24.96 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHcCCHHHHHHHHhhcCC------CCHHHHHHHHH-HHHHcCC--hhHHHHHHHHHhhc
Q 006246 341 YAKCGRLDMAWKVFEDMKM------KEVFTWNAMIG-GLAMHGR--ADDAIELFFKMQRE 391 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 391 (654)
....|++++|.+-++++.+ +-...|+.+.. +++.++. +-+|.-++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3455777777777776653 13345665555 5666654 55666666555443
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.08 E-value=5e+02 Score=26.96 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHhcccccCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhCCCchH
Q 006246 42 CHTSWQHLKQAHAVILKSGHFQDHYV--SGTLVKCHANSRFSNFELALKVFNSVHKPNVF---VWNSVLRACLEHNEPWR 116 (654)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~ 116 (654)
..|+.+.++ .+++.|..++... ..+.+...++ .|+.+-+.-+++.-..++.. .++ .+...+..|+.+.
T Consensus 11 ~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~--~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~ 83 (413)
T PHA02875 11 LFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMK--FRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKA 83 (413)
T ss_pred HhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHH--cCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHH
Confidence 456655444 4445676554322 2334444455 67777766666654433322 222 2334455666655
Q ss_pred HHHHHHHhHhCCCCCC----cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCCHHHHHHH
Q 006246 117 VISLYSEMVGVDSKPN----KFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHV--KSSGIQMYACFGCVNKARQI 190 (654)
Q Consensus 117 A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~ 190 (654)
+..+++ .|...+ ..-.+. +...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHH----cCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 444433 222111 111122 2222334443 34445555565554321 22333444456666666666
Q ss_pred HhcC
Q 006246 191 LDDG 194 (654)
Q Consensus 191 ~~~~ 194 (654)
++..
T Consensus 155 l~~g 158 (413)
T PHA02875 155 IDHK 158 (413)
T ss_pred HhcC
Confidence 5554
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.96 E-value=18 Score=35.68 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=51.5
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHH
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 485 (654)
...|.++.|++.|...++. -.|....|..=..++.+.++...|+.=++.. .+.|| ..-|..-..+-+..|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3456777777777766652 2334445555555666666666666655544 33343 333444445556667777777
Q ss_pred HHHHHHHhcCCC
Q 006246 486 RLGKILLEMEPQ 497 (654)
Q Consensus 486 ~~~~~~~~~~p~ 497 (654)
..+..+.+++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 777777766543
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.92 E-value=62 Score=31.69 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 006246 364 TWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVL 404 (654)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 404 (654)
-||..|..-.+.|+.++|+.++++.++.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888899999999999999999988775555665433
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.88 E-value=1.2e+02 Score=20.33 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=21.3
Q ss_pred HHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 006246 373 AMHGRADDAIELFFKMQREKMRPDRITFACVLS 405 (654)
Q Consensus 373 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 405 (654)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666667777777777777666666655553
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.63 E-value=7.1e+02 Score=28.61 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006246 361 EVFTWNAMIGGLAMHGRADDAIELFFKMQR 390 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 390 (654)
.++.+..+..+..-.|++++|..+.++..+
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 344555555555556666666655554443
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=35.59 E-value=1.2e+02 Score=32.60 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=48.5
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHH
Q 006246 293 KPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKM---KEVFTWNAMI 369 (654)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 369 (654)
.|-...++...-.+...|+...|...+..+........-+....|.+...+.|-.-+|..++.+... ....++-.+.
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 3333333333333344555555555555444322111111222344455555555566555554332 2344555666
Q ss_pred HHHHHcCChhHHHHHHHHHhhc
Q 006246 370 GGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 370 ~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
.+|....+.+.|++.|++..+.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhc
Confidence 6666666666676666666654
No 418
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.57 E-value=4.5e+02 Score=26.05 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHcCC--HHHHHHHHhhc--CCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHH---------HhhcCCCCC--H
Q 006246 338 VDMYAKCGR--LDMAWKVFEDM--KMKEVFTWNAMIGGLAMHG-----RADDAIELFFK---------MQREKMRPD--R 397 (654)
Q Consensus 338 i~~y~~~g~--~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~---------m~~~g~~p~--~ 397 (654)
+-++++.|. ++.+.++...+ .+.+...|..++..+.... ..+.....|+. +.+.|..+. .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred HHHHHHHHHH-HccCC-----HHHHHHHHHHHHHHcCC---CCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH
Q 006246 398 ITFACVLSAC-AHAGM-----IDRGLQALTYMQQMYGI---DPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVW 468 (654)
Q Consensus 398 ~t~~~ll~~~-~~~g~-----~~~a~~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 468 (654)
......+... ....- .++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 469 EALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 469 ~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
..++.+.....+.+...++++.++.
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcC
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.39 E-value=55 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchH
Q 006246 263 TWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVL 299 (654)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (654)
-|+..|....+.|+.++|+.++++..+.|+.--..||
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4779999999999999999999999998866444444
No 420
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.13 E-value=1e+02 Score=30.13 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 444 GRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 444 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+.|+.++|..+|+.. ...| ++.+..-+....-.++++-+|.++|-+++.+.|.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3677778888877754 4444 355555555566667778888888888888888875
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.01 E-value=98 Score=22.17 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
..++.++...|++++|.++.+.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555555555555544443
No 422
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.48 E-value=4.1e+02 Score=25.21 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHH
Q 006246 236 MISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQG 315 (654)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (654)
.+..|++.-++.-|-..++++.+| ..+-.+++ -|.+..+..---++.+-....+++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 355666666666666666666654 11111222 2333333333333333334455554444444333 3445666555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCC
Q 006246 316 IWIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRP 395 (654)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 395 (654)
...++.-.. ++ .+-.+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|..|
T Consensus 212 lNnLQst~~---------------g~----g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVN---------------GF----GLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhc---------------cc----cccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 544433221 00 1223344666666677766666666544 567899999999999999887
Q ss_pred CHHHHHHHHHHHH
Q 006246 396 DRITFACVLSACA 408 (654)
Q Consensus 396 ~~~t~~~ll~~~~ 408 (654)
... .+++...+-
T Consensus 272 ~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 272 EDI-ITTLFRVVK 283 (333)
T ss_pred HHH-HHHHHHHHH
Confidence 654 334444443
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.43 E-value=2e+02 Score=29.78 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006246 261 EITWSAIIDGYTKDGYYKEALEVFNEM 287 (654)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (654)
+.++--+.-+|...+++.+|.+.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555566665555554
No 424
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.35 E-value=1.4e+02 Score=20.71 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=19.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHH
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACV 403 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 403 (654)
+..++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 445666777777777777777663 5655444333
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.96 E-value=1.2e+02 Score=31.82 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=44.5
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcchHHH-HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChHHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVEHYGC-IVDLLGRAGYLAEAEEVISSM-PMEPN-AAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 485 (654)
..+.++.|..++.++.+ +.|+-.+|-. =..++.+.+++..|+.=+.+. ...|+ ...|--=..+|...+++.+|.
T Consensus 16 ~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 34445555555555544 2444333222 224455555555555433333 33332 222222334566666677777
Q ss_pred HHHHHHHhcCCCCC
Q 006246 486 RLGKILLEMEPQNR 499 (654)
Q Consensus 486 ~~~~~~~~~~p~~~ 499 (654)
..++....+.|+++
T Consensus 93 ~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHhhhcCcCcH
Confidence 77777777777776
No 426
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.75 E-value=5.7e+02 Score=26.40 Aligned_cols=61 Identities=25% Similarity=0.152 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHH-------HHHHHHHHcCChhHHHHHHHHHhhc
Q 006246 331 AVLGTALVDMYAKCGRLDMAWKVFEDMKMKEVFTWN-------AMIGGLAMHGRADDAIELFFKMQRE 391 (654)
Q Consensus 331 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-------~li~~~~~~g~~~~A~~l~~~m~~~ 391 (654)
....|.|++.|...+.++.|..+..+..-|+..+-| -+....+-++++..|.+.|-.....
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 456677888888888888888888777755332211 1222334456777777777776654
No 427
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.37 E-value=4.3e+02 Score=24.81 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHH
Q 006246 401 ACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM-----PMEPNAAVWEALLGA 474 (654)
Q Consensus 401 ~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~ 474 (654)
...++.+.+.+.+++++...+.-.+. -+.|...-..+++.|+-.|++++|..-++-. ...+-...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 33444555566666666666555442 2233444455666666666666666555433 122335556555544
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.26 E-value=1.3e+02 Score=20.28 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=14.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCcchHHHH
Q 006246 273 KDGYYKEALEVFNEMQRDKIKPRKFVLSCV 302 (654)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (654)
+.|...++..++++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555544444444333
No 429
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.78 E-value=1.4e+02 Score=22.95 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHH
Q 006246 49 LKQAHAVILKSGHFQDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRV 117 (654)
Q Consensus 49 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 117 (654)
...+...+++.|+- +..-.-...+. ..+.+.|.++++.++.+...+|.++..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~--~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAA--GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34567777776643 22222222334 56788899999999999999999999988887765443
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.68 E-value=2e+02 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=18.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 471 LLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 471 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34557777777777777777776 66554
No 431
>PRK09169 hypothetical protein; Validated
Probab=31.65 E-value=1.3e+03 Score=30.10 Aligned_cols=397 Identities=10% Similarity=0.001 Sum_probs=216.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHh---HhCC----CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh----C-
Q 006246 96 PNVFVWNSVLRACLEHNEPWRVISLYSEM---VGVD----SKPNKFTYPTVFKACSITEADKEGVQVHAHVVKN----G- 163 (654)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g- 163 (654)
-+......+++++++=.+...+...-+.+ +... ...|......+++++++--+.......-..+... +
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 35566777778887765544433332222 1110 1134555667778877776655544433333221 0
Q ss_pred --CCCChhhHHHHHHHHHhcCCHHHHHHHHhcC-----------CCCChhhHHHHHHHHHHcCCHHHHHHHH----HhcC
Q 006246 164 --LCGDVHVKSSGIQMYACFGCVNKARQILDDG-----------SKSDVICWNALIDGYLKCGDIEGAKELF----KSTK 226 (654)
Q Consensus 164 --~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~ 226 (654)
...+..-...++++++|-.+-+.+...-+.+ ..-|.......+.+++|-.+-+.+...- ..+.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 1234455667788888877665554433221 1234555666777778776544322221 1111
Q ss_pred -------CCCcchHHHHHHHHHhcCCHHHHH----HHHHhcCC-------CCHhHHHHHHHHHHhcCChHH----HHHHH
Q 006246 227 -------DKNTGSYNAMISGFARFGRFEEAR----KLFNEMND-------KDEITWSAIIDGYTKDGYYKE----ALEVF 284 (654)
Q Consensus 227 -------~~~~~~~~~li~~~~~~g~~~~A~----~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~----A~~~~ 284 (654)
.-|..-....+++++|..+.+.+. .+-+++.. -|..-....+.++.+-++-+. |..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 135566777888888888766533 33333321 256667778888888766442 33344
Q ss_pred HHHHhC-C--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH---c----CCCCchhHHHHHHHHHHHcCCHHHH----
Q 006246 285 NEMQRD-K--IKPRKFVLSCVLAACASLGALDQGIWIHDHVKR---N----SICVDAVLGTALVDMYAKCGRLDMA---- 350 (654)
Q Consensus 285 ~~m~~~-g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~----~~~~~~~~~~~li~~y~~~g~~~~A---- 350 (654)
..+... + -..|..-....+.+|++.+.-+.+.+....+.. . .-..+..-....+.+++|.++-+..
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 443332 1 124667788899999988766644433322211 1 1123455556678888887765433
Q ss_pred HHHHhhcCC-------CCHHHHHHHHHHHHHcCChhHH----HHHHHHHhhc---CCCCCHHHHHHHHHHHHccCCHHHH
Q 006246 351 WKVFEDMKM-------KEVFTWNAMIGGLAMHGRADDA----IELFFKMQRE---KMRPDRITFACVLSACAHAGMIDRG 416 (654)
Q Consensus 351 ~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A----~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a 416 (654)
..+...+.. -+..-....+.++++-++.+.. ..+..++... --.-|..-+.+.+.++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 233333321 2455667778888887765543 2233333221 1123566678889999988764433
Q ss_pred H----HHHHHHHHHc--CCCCCcchHHHHHHHHHHcCCHHH----HHHHHHhC----C--CCCCHHHHHHHHHHHHHhCC
Q 006246 417 L----QALTYMQQMY--GIDPEVEHYGCIVDLLGRAGYLAE----AEEVISSM----P--MEPNAAVWEALLGACRKHGE 480 (654)
Q Consensus 417 ~----~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~ 480 (654)
. .+...+..+- --..+.......+.++++-+.-.. |..+.... . ..-|+.-+..+++++.+-.+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 3 2233222210 012345567788888988775432 33333333 1 22367888889999999887
Q ss_pred hHHHHHHHHHHH
Q 006246 481 VEFGERLGKILL 492 (654)
Q Consensus 481 ~~~a~~~~~~~~ 492 (654)
.+....+...+-
T Consensus 640 ~~~cr~Aa~aLA 651 (2316)
T PRK09169 640 EDDCRQAAEALA 651 (2316)
T ss_pred chhHHHHHHHHH
Confidence 776555444443
No 432
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.52 E-value=5.5e+02 Score=25.80 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHH
Q 006246 378 ADDAIELFFKMQREKMRPDRITFACVLSACAH------AGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAE 451 (654)
Q Consensus 378 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~------~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 451 (654)
.++++.++.+....+. |-.......|.+|-- .-+|.....+|+.+.. +.|++.+--.=.-++++..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 5688888888888764 888888877776642 2367777777777765 35554432222234555555677
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 452 AEEVISSMPMEPN----AAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 452 A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
++..++-+.-+|. ...+..-...+.+.|..++|...|++++.+.++.
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 7777777643322 3344556677899999999999999999998875
No 433
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.47 E-value=3.5e+02 Score=23.47 Aligned_cols=50 Identities=10% Similarity=0.288 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 006246 361 EVFTWNAMIGGLAMHGR-ADDAIELFFKMQREKMRPDRITFACVLSACAHA 410 (654)
Q Consensus 361 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 410 (654)
+-.+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34456666666644443 334556666676666677777777777766554
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.43 E-value=1.8e+02 Score=25.95 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=32.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHH
Q 006246 389 QREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLA 450 (654)
Q Consensus 389 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 450 (654)
.+.|++++..-. .++......+..-.|.++++.+.+. +...+..|-..-++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 344555544433 3333333344455667777777664 44555555444556777777654
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.38 E-value=8.9e+02 Score=28.16 Aligned_cols=128 Identities=11% Similarity=0.083 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 006246 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179 (654)
Q Consensus 100 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 179 (654)
-|..|+-.|...|+.++|++++.+.....-.-|.. . .+.-..+.+.+.+.+- ++..+.-...+ ..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-~------------~~~~e~ii~YL~~l~~-~~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-Q------------LDGLEKIIEYLKKLGA-ENLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-h------------hhhHHHHHHHHHHhcc-cchhHHHHHhh-hh
Confidence 38899999999999999999999987531001111 1 1111123444444432 22111111111 12
Q ss_pred hcCCHHHHHHHHhcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHh
Q 006246 180 CFGCVNKARQILDDGSKSDVICW-NALIDGYLKCGDIEGAKELFKSTKD----KNTGSYNAMISGFAR 242 (654)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~ 242 (654)
-..+.+.+.++|..-......+. ...+-.|......+-++..++.+.. .+..-.+.++..|++
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 23455555566544111011111 1123345667777778888877764 345556666666654
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.38 E-value=7.9e+02 Score=28.30 Aligned_cols=130 Identities=14% Similarity=0.190 Sum_probs=88.9
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006246 340 MYAKCGRLDMAWKVFEDMKMKEVFTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQA 419 (654)
Q Consensus 340 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 419 (654)
....||+++.|++.-.++. |..+|..|+..-..+|+.+-|...|++... |..|-..|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999988766654 556899999999999999999999987654 33344456667888887666
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 420 LTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 420 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
...+.. .-|.. .....-.-.|+.++=..+++..+..|- .|- .-..||.-++|.++.+++-.
T Consensus 721 ~~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 655543 22221 111112236889999999998864432 221 23568888899988888766
No 437
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.10 E-value=6.2e+02 Score=26.25 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=65.3
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCH
Q 006246 109 LEHNEPWRVISLYSEMVGVDSKPNKFT--YPTVFKACSITEADKEGVQVHAHVVKNGLCGDVH--VKSSGIQMYACFGCV 184 (654)
Q Consensus 109 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 184 (654)
++.|+.+- ++.+.+.|..|+... -.+.+..++..|+.+ +.+.+++.|..++.. .....+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44565543 344445676665432 233444445566654 344455556554432 122334455567777
Q ss_pred HHHHHHHhcCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHhcCCCCcch--HHHHHHHHHhcCCHHHHHHHHHh
Q 006246 185 NKARQILDDGSKSDVI---CWNALIDGYLKCGDIEGAKELFKSTKDKNTGS--YNAMISGFARFGRFEEARKLFNE 255 (654)
Q Consensus 185 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 255 (654)
+.+..+++.....+.. .-.+.+...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+..+++.
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 7777777665322111 01122333345566655555554433332211 12233344455666555555544
No 438
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=4.2e+02 Score=25.27 Aligned_cols=117 Identities=9% Similarity=-0.036 Sum_probs=65.8
Q ss_pred HHHcCCHHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHccCCHHHH
Q 006246 341 YAKCGRLDMAWKVFEDMKM--KEV-FTWNAMIGGLAMHGRADDAIELFFKMQREKMRPDRIT-FACVLSACAHAGMIDRG 416 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a 416 (654)
|....+++.|...|.+... |++ .-|+.-+..+.+..+++.+..--++.++ +.||.+- ...+-.+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3344567777777766554 444 3456667777778888877776666665 4666653 33344455666777777
Q ss_pred HHHHHHHHHH---cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 417 LQALTYMQQM---YGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 417 ~~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
+..+.+.... ..+.|.......|.++=-..=...++..+.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777766432 133333444444444333333333444444443
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.78 E-value=2.4e+02 Score=24.45 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=25.4
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCH
Q 006246 388 MQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYL 449 (654)
Q Consensus 388 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 449 (654)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 12 lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 12 LKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3344444433321 2334444444445555555555553 2222222222233555555543
No 440
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.73 E-value=8.8e+02 Score=27.92 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=42.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCcc-------hHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCchhHHHHHHHH
Q 006246 273 KDGYYKEALEVFNEMQRDKIKPRKF-------VLSCVLA-ACASLGALDQGIWIHDHVKRN----SICVDAVLGTALVDM 340 (654)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~ 340 (654)
...++++|..+..++...-..|+.. .+..+-. .....|+++.+..+-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3456666666666654432122211 1111111 122345666666665555442 223344555556666
Q ss_pred HHHcCCHHHHHHHHhhcC
Q 006246 341 YAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 341 y~~~g~~~~A~~~~~~m~ 358 (654)
..-.|+++.|..+..+..
T Consensus 507 ~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 507 AHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHhchHHHHHHHHHHHH
Confidence 666677777766655443
No 441
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.71 E-value=4.9e+02 Score=24.92 Aligned_cols=63 Identities=16% Similarity=0.005 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 006246 436 YGCIVDLLGRAGYLAEAEEVISSM-PMEP-NAAVWEALLGACRKHGEVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 498 (654)
+..+-..+...|++-++++-..+. ...| |+..|---..|....-+..+|..-+.++++++|.-
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 444555666777887777776665 2233 56666666667777778999999999999999874
No 442
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.59 E-value=1.1e+02 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=24.9
Q ss_pred hCChHHHHHHHHHHHhc------CCC---CC--CchHHHHHHHHHHhc
Q 006246 478 HGEVEFGERLGKILLEM------EPQ---NR--RCDDVAKMRKLMKER 514 (654)
Q Consensus 478 ~g~~~~a~~~~~~~~~~------~p~---~~--~~~~a~~~~~~m~~~ 514 (654)
.|+.+.|+..|++.+.. -|. .. .|+.|.++..+|++.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 36677777777766652 121 11 899999999999764
No 443
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.32 E-value=7.2e+02 Score=27.02 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 434 EHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
..-.+|-+-+....++.-|.++..+.++. ....|.+..-+|.+.+++..|..-|++++++..++.
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedi 621 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDI 621 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCcc
Confidence 34456667777778888888888887754 456899999999999999999999999999765553
No 444
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.16 E-value=2.2e+02 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=27.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC
Q 006246 228 KNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGY 276 (654)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (654)
.++.+-...-...+..-+.+.+.++++.++.+...+|..+..++-..+.
T Consensus 32 ~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 32 KDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3333433333333444556666667777666666666666666655443
No 445
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.01 E-value=3.5e+02 Score=29.78 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcC
Q 006246 204 ALIDGYLKCGDIEGAKELFKSTK 226 (654)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~ 226 (654)
+|..+|..+|++..+..+++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 56666666666666666665554
No 446
>PRK10941 hypothetical protein; Provisional
Probab=29.95 E-value=5.1e+02 Score=25.24 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006246 366 NAMIGGLAMHGRADDAIELFFKMQREKMRPD-RITFACVLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 366 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
+.+-.+|.+.++++.|+...+.+... .|+ ..-+.--.-.|.+.|.+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33444445555555555555555442 222 22222222334444444444444444443
No 447
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.93 E-value=4.1e+02 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006246 403 VLSACAHAGMIDRGLQALTYMQQ 425 (654)
Q Consensus 403 ll~~~~~~g~~~~a~~~~~~~~~ 425 (654)
-|.-|.+.|+++.+...+.++..
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34455556666666666655554
No 448
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.75 E-value=60 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 006246 479 GEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 479 g~~~~a~~~~~~~~~~~p~~~ 499 (654)
|+.+.+..+|++++...|.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~ 21 (33)
T smart00386 1 GDIERARKIYERALEKFPKSV 21 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCCh
Confidence 567888999999998888654
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.45 E-value=5.7e+02 Score=25.31 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHH
Q 006246 409 HAGMIDRGLQALTYMQQMYGIDPEVE----HYGCIVDLLGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFG 484 (654)
Q Consensus 409 ~~g~~~~a~~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 484 (654)
+...+++...+...-.++ .--|+.+ .|++++++ +.+.+-.++..+--+ .....|.-|+.+++..|+.|..
T Consensus 267 ~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qal-rhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQAL-RHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred cCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHH-HHHHhhhHHHHHHhcCChHHHH
Confidence 334455555444444343 3456654 46665554 333322222221110 1345788899999999998876
Q ss_pred HH
Q 006246 485 ER 486 (654)
Q Consensus 485 ~~ 486 (654)
.-
T Consensus 341 Ll 342 (412)
T KOG2297|consen 341 LL 342 (412)
T ss_pred HH
Confidence 53
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.41 E-value=3.4e+02 Score=22.75 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhh
Q 006246 314 QGIWIHDHVKRNSICV-DAVLGTALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 314 ~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~ 356 (654)
.+.++|..|...|+.. -+..|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777888887776644 355667777777888888888887764
No 451
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.23 E-value=1.4e+02 Score=29.43 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=54.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCc--chHHHHHHH
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRI---TFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEV--EHYGCIVDL 442 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~--~~~~~li~~ 442 (654)
|..+-.+.|+..+|.+.|+.+.+. .|-.. ....|+.+|.....+.+...++.+.-+. . .|.. ..|++ +
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-s-lPkSA~icYTa---A 353 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-S-LPKSAAICYTA---A 353 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CcchHHHHHHH---H
Confidence 444455678888888888777654 22111 2335566666655555554444443321 1 1221 11221 1
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCC
Q 006246 443 LGRAGYLAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNR 499 (654)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 499 (654)
+. ++..+-++. .||..+-..|-.+- -.|.++..++.+.+|.-+
T Consensus 354 LL------K~RAVa~kF--spd~asrRGLS~AE------~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 354 LL------KTRAVSEKF--SPETASRRGLSTAE------INAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HH------HHHHHHhhc--CchhhhhccccHHH------HHHHHHHHHHhhcCCCCc
Confidence 11 222333332 45554443333221 236677778888888765
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.91 E-value=3.4e+02 Score=24.61 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=8.8
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 006246 406 ACAHAGMIDRGLQALTYMQ 424 (654)
Q Consensus 406 ~~~~~g~~~~a~~~~~~~~ 424 (654)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444444444444444443
No 453
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.82 E-value=3.8e+02 Score=28.86 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcC
Q 006246 204 ALIDGYLKCGDIEGAKELFKSTK 226 (654)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~ 226 (654)
.++.-|.+.+++++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45555666666666666665554
No 454
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.34 E-value=8.2e+02 Score=26.80 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHh-----cccccCCChHHHHHHHhcCCC--------CCcchHHHHHHHHHhCC
Q 006246 46 WQHLKQAHAVILKSGHFQDHYVSGTLVKC-----HANSRFSNFELALKVFNSVHK--------PNVFVWNSVLRACLEHN 112 (654)
Q Consensus 46 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~-----y~~~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g 112 (654)
...+.+.++...+.|.. ..-..+..+ +.. ..+++.|...|..+.+ -+..+.+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~--~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGV--TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccc--cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 56788888888887732 222222222 344 6788999988877633 24456667777777654
Q ss_pred -----CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhc-cCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHH----hcC
Q 006246 113 -----EPWRVISLYSEMVGVDSKPNKFTYPTVFKACSI-TEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA----CFG 182 (654)
Q Consensus 113 -----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g 182 (654)
+...|+.+|.+.-..| .|+...+...+.-... ..+...|.+.+..+.+.|. ++ ..-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcCC
Confidence 4566888888888776 4455444433333333 2456788888888888773 22 2222333332 223
Q ss_pred CHHHHHHHHhcC
Q 006246 183 CVNKARQILDDG 194 (654)
Q Consensus 183 ~~~~A~~~~~~~ 194 (654)
+.+.|..++++.
T Consensus 379 ~~~~A~~~~k~a 390 (552)
T KOG1550|consen 379 NLELAFAYYKKA 390 (552)
T ss_pred CHHHHHHHHHHH
Confidence 556666666654
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.28 E-value=4.6e+02 Score=24.44 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 006246 466 AVWEALLGACRKHGEVEFGERLGKILLEME 495 (654)
Q Consensus 466 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 495 (654)
.+.-.++...++.|+.++|.+.+.+++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455667788899999999999988743
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.10 E-value=3.7e+02 Score=27.91 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC-----------CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 006246 205 LIDGYLKCGDIEGAKELFKSTKD-----------KNTGSYNAMISGFARFGRFEEARKLFN 254 (654)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (654)
|++.++-.|++..|+++++.+.- -.+.++-.+.-+|.-.+++.+|.+.|.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~ 188 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFS 188 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444321 122334444444445555555555543
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=6.5e+02 Score=25.18 Aligned_cols=10 Identities=50% Similarity=0.693 Sum_probs=7.8
Q ss_pred hhHHHHHHhc
Q 006246 587 SEKLAIAFGF 596 (654)
Q Consensus 587 ~e~la~~~~~ 596 (654)
-+.||-+||.
T Consensus 320 l~~MA~aFgV 329 (393)
T KOG0687|consen 320 LESMAKAFGV 329 (393)
T ss_pred HHHHHHHhCc
Confidence 4678888886
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.66 E-value=6e+02 Score=24.71 Aligned_cols=184 Identities=10% Similarity=-0.066 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH----cCChhHHHH
Q 006246 310 GALDQGIWIHDHVKRNSIC-VDAVLGTALVDMYAKCGRLDMAWKVFEDMKMK-EVFTWNAMIGGLAM----HGRADDAIE 383 (654)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~ 383 (654)
+++..+...+......+.. -................+..+|.+.|..+... +......|...|.. ..+..+|..
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHH
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHcc-----CCHH--HHHHHHHHHHHHcCCCCCcchHHHHHHHH----HHcCCHHHH
Q 006246 384 LFFKMQREKMRPDRITFACVLSACAHA-----GMID--RGLQALTYMQQMYGIDPEVEHYGCIVDLL----GRAGYLAEA 452 (654)
Q Consensus 384 l~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~--~a~~~~~~~~~~~g~~p~~~~~~~li~~~----~~~g~~~~A 452 (654)
+|+++.+.|..+-..+...+...+... -..+ .|...+.++... + +......+...| +-..++++|
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC---------------ChHHHHHHHHHHHhcCCCC
Q 006246 453 EEVISSMPMEPNAAVWEALLGACRKHG---------------EVEFGERLGKILLEMEPQN 498 (654)
Q Consensus 453 ~~~~~~m~~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~p~~ 498 (654)
...|.+.-..-+......+. .+...| +...|...+.+.....+..
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 459
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.11 E-value=7.6e+02 Score=25.65 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=36.0
Q ss_pred CCHhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 006246 259 KDEITWSAIIDGYTK---DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASLG 310 (654)
Q Consensus 259 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (654)
++-..+.-+|+++-+ -.+++.|+-++-+|.+.|-.|....-..+.-++...|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 454556667777765 4688999999999999987676555555555555544
No 460
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.99 E-value=7.4e+02 Score=26.48 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=21.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCcchHH
Q 006246 272 TKDGYYKEALEVFNEMQRDKIKPRKFVLS 300 (654)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (654)
...+++++|+.++.+|...|..|....-.
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~ 282 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQ 282 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 35688999999999998888776554333
No 461
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=25.53 E-value=42 Score=17.82 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.6
Q ss_pred cchhhHHHhHhh
Q 006246 615 EDCHSATKLISK 626 (654)
Q Consensus 615 ~~~h~~~~~~s~ 626 (654)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888874
No 462
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=25.17 E-value=3.3e+02 Score=23.00 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006246 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKR 324 (654)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (654)
.+-++.+..-++.|+.......|.+|.+.+++..|..+++-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555667788888888888888888888888888877654
No 463
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=24.44 E-value=1.2e+03 Score=27.46 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 006246 100 VWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCGDVHVKSSGIQMYA 179 (654)
Q Consensus 100 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 179 (654)
++-++=+++.....+++|+..|++...+ ++--...|..+.+ .+..+++++.+.|-+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------- 532 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFR---------LGITLLEKASEQGDP-------------- 532 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHH---------hhHHHHHHHHhcCCh--------------
Confidence 3445557788888899999999998764 2323344544433 344455555443311
Q ss_pred hcCCHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 006246 180 CFGCVNKARQILDDGSKSD--VICWNALIDGYLKCGDIEGAKELFKST 225 (654)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (654)
..+++|..-|+...... +--|-.-.-.|.+.|++++-++.+.-.
T Consensus 533 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (932)
T PRK13184 533 --RDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLA 578 (932)
T ss_pred --HHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 13445555555543222 222333333455666666655555433
No 464
>PRK09169 hypothetical protein; Validated
Probab=24.18 E-value=1.7e+03 Score=29.10 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=238.4
Q ss_pred CchhHHHHHHHhcccccCCChHHHHHHHhcC----C-------CCCcchHHHHHHHHHhCCCchHHHHHHHHh----HhC
Q 006246 63 QDHYVSGTLVKCHANSRFSNFELALKVFNSV----H-------KPNVFVWNSVLRACLEHNEPWRVISLYSEM----VGV 127 (654)
Q Consensus 63 ~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~----~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 127 (654)
-++.....++++++| -.+-..+...-+.+ . .-|......+++++++.-+-......-..+ ...
T Consensus 160 l~~~~v~~lLNalSK--WP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~ 237 (2316)
T PRK09169 160 LDAISFALLLNALSK--WPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADE 237 (2316)
T ss_pred hhhHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 356778888999998 66554444333222 1 123344555677777766554433333222 211
Q ss_pred C---CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH---h----CCCCChhhHHHHHHHHHhcCCHHHHHHHH------
Q 006246 128 D---SKPNKFTYPTVFKACSITEADKEGVQVHAHVVK---N----GLCGDVHVKSSGIQMYACFGCVNKARQIL------ 191 (654)
Q Consensus 128 g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~------ 191 (654)
+ ...+......+|+++++-.+-+.+.+.-..+-. . ....+..-....+++++|..+-+.+....
T Consensus 238 ~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~r 317 (2316)
T PRK09169 238 PGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAER 317 (2316)
T ss_pred hHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 1 123456778889999887776555443332221 1 11345555667788888876655433222
Q ss_pred --hcC---CCCChhhHHHHHHHHHHcCCHHHH----HHHHHhcC-------CCCcchHHHHHHHHHhcCCHHH----HHH
Q 006246 192 --DDG---SKSDVICWNALIDGYLKCGDIEGA----KELFKSTK-------DKNTGSYNAMISGFARFGRFEE----ARK 251 (654)
Q Consensus 192 --~~~---~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~----A~~ 251 (654)
.+. ..-+.......+.++.|-.+.+.+ ..+-+.+. .-|..-....+++++|.++-+. |..
T Consensus 318 L~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~a 397 (2316)
T PRK09169 318 LAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEA 397 (2316)
T ss_pred HHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 221 223455556677788887766542 22222222 1366677888999999887543 333
Q ss_pred HHHhcCC-------CCHhHHHHHHHHHHhcCChHHHHHHH----HHHHhC---CCCCCcchHHHHHHHHHhcCChhHHH-
Q 006246 252 LFNEMND-------KDEITWSAIIDGYTKDGYYKEALEVF----NEMQRD---KIKPRKFVLSCVLAACASLGALDQGI- 316 (654)
Q Consensus 252 ~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~- 316 (654)
+..++.. -|..-....+.++++-+.-+.+.... ...... .-..+..-+...+.++++-...+...
T Consensus 398 LA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~ 477 (2316)
T PRK09169 398 LAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRR 477 (2316)
T ss_pred HHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHH
Confidence 4433332 25666777888888876655332222 222211 01335677788888888877644332
Q ss_pred ---HHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHHHHHHH----HhhcCC-------CCHHHHHHHHHHHHHcCChh
Q 006246 317 ---WIHDHVKRN---SICVDAVLGTALVDMYAKCGRLDMAWKV----FEDMKM-------KEVFTWNAMIGGLAMHGRAD 379 (654)
Q Consensus 317 ---~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~~~----~~~m~~-------~~~~~~~~li~~~~~~g~~~ 379 (654)
.+...+... .-..+..-....+.+++|.++.+.+... ...+.. -+..-+...+.++.+-.+.+
T Consensus 478 aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~ 557 (2316)
T PRK09169 478 AAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEP 557 (2316)
T ss_pred HHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCch
Confidence 222222211 1123455566788899999887664333 222221 26667778888898876632
Q ss_pred ----HHHHHHHHHhhcC---CCCCHHHHHHHHHHHHccCCHHHHHH----HHHHHHHHcCC--CCCcchHHHHHHHHHHc
Q 006246 380 ----DAIELFFKMQREK---MRPDRITFACVLSACAHAGMIDRGLQ----ALTYMQQMYGI--DPEVEHYGCIVDLLGRA 446 (654)
Q Consensus 380 ----~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~----~~~~~~~~~g~--~p~~~~~~~li~~~~~~ 446 (654)
.|..+...+.+.. -..|..-..+.+.++++-+....+.+ +...+...-+. .-+..-....+.++++-
T Consensus 558 ~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKW 637 (2316)
T PRK09169 558 DCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKW 637 (2316)
T ss_pred HHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcC
Confidence 2334444443321 12356678888999999876543333 33333332111 12345567788888888
Q ss_pred CCHHHHHHHHHhC----C------CCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 006246 447 GYLAEAEEVISSM----P------MEPNAAVWEALLGACRKHGEVEFGERLGKIL 491 (654)
Q Consensus 447 g~~~~A~~~~~~m----~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 491 (654)
.+.+........+ . ..-+..-+..+++++.+-.+.+.+..+...+
T Consensus 638 P~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 638 PDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred CCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7766544333222 1 1235667788889999988877655555444
No 465
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.06 E-value=4.6e+02 Score=22.49 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHHcCCHHHHHHHHHhC
Q 006246 394 RPDRITFACVLSACAHAG---MIDRGLQALTYMQQMYGIDPE--VEHYGCIVDLLGRAGYLAEAEEVISSM 459 (654)
Q Consensus 394 ~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (654)
.+...+-..+..++.++. ++.+++.+++.+.+. -.|+ .+..--|.-++.|.++++++..+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344455555666666554 466777777777651 1222 222333455677888888888877765
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=5.1e+02 Score=26.04 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=31.4
Q ss_pred HcCCHHHHHHHHhhcCC-------CCHHHH--HHHHHHHHHcCChhHHHHHHHHHhh-----cCCCCCHH-HHHHHHH
Q 006246 343 KCGRLDMAWKVFEDMKM-------KEVFTW--NAMIGGLAMHGRADDAIELFFKMQR-----EKMRPDRI-TFACVLS 405 (654)
Q Consensus 343 ~~g~~~~A~~~~~~m~~-------~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~-t~~~ll~ 405 (654)
++++.++|.+.++++.. |+.+.| ..+...+...|+..++.+++.+..+ .|++|+.. .|..+-+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 34455555555554432 233332 3344455566666666666666555 45666444 3444433
No 467
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.72 E-value=3.6e+02 Score=23.28 Aligned_cols=61 Identities=5% Similarity=0.014 Sum_probs=31.6
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 006246 285 NEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGR 346 (654)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 346 (654)
+.+.+.|++++.. -..++..+...+..-.|.++|+.+.+.+...+..+--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555555433 223455555555556666666666665554443333334555555554
No 468
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=23.65 E-value=8.5e+02 Score=28.31 Aligned_cols=194 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC
Q 006246 87 LKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKACSITEADKEGVQVHAHVVKNGLCG 166 (654)
Q Consensus 87 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 166 (654)
.+.|.++.+.+......++..+.+.-.--+-.++-.-+.+.+..........-+..++..|+.+ +.+.+++.|..+
T Consensus 476 ~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~----~l~~Ll~~G~d~ 551 (823)
T PLN03192 476 TSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAA----LLEELLKAKLDP 551 (823)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCccchhHHHHHHHcCCHH----HHHHHHHCCCCC
Q ss_pred Chhh--HHHHHHHHHhcCCHHHHHHHHhcC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006246 167 DVHV--KSSGIQMYACFGCVNKARQILDDG---SKSDVICWNALIDGYLKCGDIEGAKELFKSTKDKNTGSYNAMISGFA 241 (654)
Q Consensus 167 ~~~~--~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 241 (654)
+... ..+.+...+..|..+-+.-+++.+ ...|..-++.+..+ +..|+.+-+.-+++.....+...-...+...+
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa 630 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHHKIFRILYHFASISDPHAAGDLLCTAA 630 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCHHHHHHHHhcCcccCcccCchHHHHHH
Q ss_pred hcCCHHHHHHHHHhcCCCCHhHHH--HHHHHHHhcCChHHHHHHHH
Q 006246 242 RFGRFEEARKLFNEMNDKDEITWS--AIIDGYTKDGYYKEALEVFN 285 (654)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~ 285 (654)
..|+.+-+..+++.-.+.|....+ +-+...+..|+.+-+.-+++
T Consensus 631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676 (823)
T ss_pred HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
No 469
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.58 E-value=7.9e+02 Score=25.02 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhcccccCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc----ccHHH
Q 006246 63 QDHYVSGTLVKCHANSRFSNFELALKVFNSVHKPNVFVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNK----FTYPT 138 (654)
Q Consensus 63 ~~~~~~~~Li~~y~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ 138 (654)
|++.+.-.++.-|.. ..+-+.-+.+=+.+ ..+.+.+-.++.+.+.+...++...+.... ..|.. .....
T Consensus 73 ~~~~~li~~~~~FV~--~~n~eqlr~as~~f----~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~ 145 (422)
T KOG2582|consen 73 PDPETLIELLNDFVD--ENNGEQLRLASEIF----FPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHAD 145 (422)
T ss_pred CCHHHHHHHHHHHHH--hcChHHHhhHHHHH----HHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHH
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhC------CCCChhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 006246 139 VFKACSITEADKEGVQVHAHVVKNG------LCGDVHVKSSGIQMYACFGCVNKARQILDDGSKSDVICWNALIDGYLKC 212 (654)
Q Consensus 139 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 212 (654)
++..|.+.+++..+.-.++.-+-.- .+|..+..-..-.+| .|...
T Consensus 146 l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~-----------------------------icigl 196 (422)
T KOG2582|consen 146 LLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGM-----------------------------ICIGL 196 (422)
T ss_pred HHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcce-----------------------------eeecc
Q ss_pred CCHHHHHHHHHhcCC-CCcchHHHHHHHH--------HhcCCH--------HHHHHHHHhcCCC----------CHhH-H
Q 006246 213 GDIEGAKELFKSTKD-KNTGSYNAMISGF--------ARFGRF--------EEARKLFNEMNDK----------DEIT-W 264 (654)
Q Consensus 213 g~~~~A~~~~~~m~~-~~~~~~~~li~~~--------~~~g~~--------~~A~~~~~~~~~~----------~~~~-~ 264 (654)
.+++.|+.+|....- |-...-...+.+| .-.|+. ..|.+.|+.|..| +..+ .
T Consensus 197 k~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eL 276 (422)
T KOG2582|consen 197 KRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTEL 276 (422)
T ss_pred ccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHH
Q ss_pred HHHH----HHHHhcCChHHHHHHHHHHHhCCCCCCcchHHHH----HHHHHhcCChhHHHHHHHHHHHcC
Q 006246 265 SAII----DGYTKDGYYKEALEVFNEMQRDKIKPRKFVLSCV----LAACASLGALDQGIWIHDHVKRNS 326 (654)
Q Consensus 265 ~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a~~~~~~~~~~~ 326 (654)
.+++ ..+.+.++..-|......|.+.+++--..||.++ +.-..+++..+++.+..-+|.+.|
T Consensus 277 r~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 277 RTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 470
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=23.35 E-value=1.1e+02 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHcCcccCCCcc
Q 006246 543 QVKEIYLMLKKIIEKLKMEGYSPNSSQV 570 (654)
Q Consensus 543 ~~~~~~~~l~~l~~~~~~~g~~pd~~~~ 570 (654)
...++...+++...+++.+|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456777888888999999999997654
No 471
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.32 E-value=5.2e+02 Score=26.86 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=55.1
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH---H-----HHHcCCHHHHHHHHhhcCC-
Q 006246 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVD---M-----YAKCGRLDMAWKVFEDMKM- 359 (654)
Q Consensus 289 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~-----y~~~g~~~~A~~~~~~m~~- 359 (654)
...+.||.++.+.+...++..-..+....+|+...+.+- |-...+-+||- + -.+...-+++.++++.|+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 346788888888887777777777888888888777763 33333333321 1 2345667889999998886
Q ss_pred ---CCHHHHHHHHHHHH
Q 006246 360 ---KEVFTWNAMIGGLA 373 (654)
Q Consensus 360 ---~~~~~~~~li~~~~ 373 (654)
.|+.-+-+|..-|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 25555556655554
No 472
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.26 E-value=5.9e+02 Score=23.37 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC--------------CCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 006246 302 VLAACASLGALDQGIWIHDHVKRNSI--------------CVDAVLGTALVDMYAKCGRLDMAWKVFED 356 (654)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 356 (654)
++-.|.+..++.+++++++.+.+..+ .+.-.+.|.-...+.++|.+|.|..++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34445555556666666655544321 12234556666777777777777777764
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.05 E-value=8.4e+02 Score=25.14 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=32.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 006246 270 GYTKDGYYKEALEVFNEMQRDKIKPRKF--VLSCVLAACA--SLGALDQGIWIHDHVKRN 325 (654)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 325 (654)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 2333333332 344566677766665543
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.92 E-value=2.5e+02 Score=26.82 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.3
Q ss_pred HHHHhCChHHH
Q 006246 474 ACRKHGEVEFG 484 (654)
Q Consensus 474 ~~~~~g~~~~a 484 (654)
.+...|+.+..
T Consensus 227 Ca~~~~~~~~~ 237 (247)
T PF11817_consen 227 CAKRLGDVEDY 237 (247)
T ss_pred HHHHhCCHHHH
Confidence 33334444333
No 475
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.90 E-value=1e+03 Score=26.11 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=12.4
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006246 191 LDDGSKSDVICWNALIDGYLKCGDIEGAKELF 222 (654)
Q Consensus 191 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (654)
+.+.+-.+...-.-++..|.+.|..+.|.++.
T Consensus 397 L~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~ 428 (566)
T PF07575_consen 397 LPRVPLDTNDDAEKLLEICAELGLEDVAREIC 428 (566)
T ss_dssp GGG----SHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HhhCCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333334334444444555555555444443
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.82 E-value=1.9e+02 Score=23.58 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCH
Q 006246 368 MIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGMI 413 (654)
Q Consensus 368 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 413 (654)
++..+...+..-.|.++++++.+.+..++..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444455555667777777777776666777766666666666644
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.79 E-value=3.9e+02 Score=23.80 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=26.2
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 006246 289 RDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYAKCGRL 347 (654)
Q Consensus 289 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 347 (654)
..|++++..-. .++..+......-.|.++++.+.+.+...+..+--.-++.+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444433322 33333333344445556666665555444433333344455555544
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.79 E-value=7.6e+02 Score=24.53 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----------HcCCHHHH
Q 006246 281 LEVFNEMQRDKIKPRKFVLSCVLAACASLGALDQGIWIHDHVKRNSICVDAVLGTALVDMYA----------KCGRLDMA 350 (654)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----------~~g~~~~A 350 (654)
.++++.|...++.|.-+.|..+.-.+.+.=.+.....+|+.+...... +..|+..++ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888889998888888887788888888888888888754322 333333332 23566666
Q ss_pred HHHHhhcCCCCHH
Q 006246 351 WKVFEDMKMKEVF 363 (654)
Q Consensus 351 ~~~~~~m~~~~~~ 363 (654)
.++++.-+.-|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 6666655544443
No 479
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.28 E-value=9.5e+02 Score=25.06 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=29.8
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 006246 263 TWSAIIDGYTK---DGYYKEALEVFNEMQRDKIKPRKFVLSCVLAACASL 309 (654)
Q Consensus 263 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (654)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34455555555 478888888888888888777654444444444333
No 480
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=21.18 E-value=4e+02 Score=20.67 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChH
Q 006246 221 LFKSTKDKNTGSYNAMISGFARFGRFEEARKLFNEMNDKDEITWSAIIDGYTKDGYYK 278 (654)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (654)
+++.+.+.++.+-.-.=..-.+..+.++|..+++.++.+...+|....+++-..|..+
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 3344444444444433334444555666666666666666666666666665544433
No 481
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.08 E-value=4e+02 Score=20.69 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 006246 317 WIHDHVKRNSICVDAVLGTALVDMYAKCGRLDMAWKVFEDMK 358 (654)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 358 (654)
++|+.....|+..|+.+|..+++...-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555655666666666666666665555555555555555543
No 482
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.91 E-value=1e+03 Score=25.25 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=81.4
Q ss_pred HccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCChHHHH
Q 006246 408 AHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGRAGYLAEAEEVISSMP--MEPNAAVWEALLGACRKHGEVEFGE 485 (654)
Q Consensus 408 ~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~ 485 (654)
...|++-.|.+-+......+.-.|+ +...........|+++.|.+.+.... +.....+...++....+.|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457766665555444443444444 33334455678899999999998772 3345677888999999999999999
Q ss_pred HHHHHHHhcCCCCC--------------CchHHHHHHHHHHhcCCccCCceeEEEECCEEEEEeeC
Q 006246 486 RLGKILLEMEPQNR--------------RCDDVAKMRKLMKERGIKTNPGSSMIDVNGVIHEFRTG 537 (654)
Q Consensus 486 ~~~~~~~~~~p~~~--------------~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~ 537 (654)
...+.++.-+-+++ ..+++.-.++.+-. +.++....|+..-.....|-.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~--~~~~~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL--LNPETQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc--cCChhcccceeeeccceeccCc
Confidence 99999998555544 45666666666543 3343344455544444445444
No 483
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=20.78 E-value=5.5e+02 Score=22.13 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCCCchHHHHH
Q 006246 449 LAEAEEVISSMPMEPNAAVWEALLGACRKHGEVEFGERLGKILLEMEPQNRRCDDVAKM 507 (654)
Q Consensus 449 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~a~~~ 507 (654)
-+.|.++++-|+ .....-.........|++..|..+.+.++..+|+|. +|+.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~---~ar~l 109 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE---EARQL 109 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H---HHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH---HHHHH
Confidence 456777888875 333444555667789999999999999999999984 44444
No 484
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.65 E-value=31 Score=24.01 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=9.0
Q ss_pred cccCcchhhHHH
Q 006246 611 LRVCEDCHSATK 622 (654)
Q Consensus 611 l~~c~~~h~~~~ 622 (654)
.-+|||||.--.
T Consensus 20 iYiCgdC~~en~ 31 (62)
T KOG3507|consen 20 IYICGDCGQENT 31 (62)
T ss_pred EEEecccccccc
Confidence 468999997544
No 485
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.52 E-value=94 Score=32.25 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=77.8
Q ss_pred cCCCCCCcchHHHHHhhhhhcCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHhcc-c-ccCCChHHHHHHHhcCC--CC
Q 006246 21 ATNIPTSEFSQKTILDILNTKCHTSWQHLKQAHAVILKSGHFQDHYVSGTLVKCHA-N-SRFSNFELALKVFNSVH--KP 96 (654)
Q Consensus 21 ~~g~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-~-~~~g~~~~A~~~f~~~~--~~ 96 (654)
.+|+.||.++|.+=.. +--.......|+.-+..+ -||...... +.+- + ...|.-..-+++|+.+. .|
T Consensus 408 sa~v~~d~~~yGsG~g--~sKK~Ak~~AAR~tLeiL-----IPd~~~~~~--n~~d~k~~~~~k~q~~le~F~~I~Iedp 478 (650)
T KOG4334|consen 408 SAGVLPDLFPYGSGVG--ASKKTAKLVAARDTLEIL-----IPDLRVSED--NVCDGKVEEDGKQQGFLELFKKIKIEDP 478 (650)
T ss_pred cccccccccccccccc--cchHHHHHHHHHHHHHHh-----cchhhhccc--ccccccccccccchhHHHHhhcccccCc
Confidence 5678888887775321 111112233444433332 244433322 1111 1 00233455578888876 33
Q ss_pred Cc----------chHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHH-HHHHhccCCcHHHHHHHHHHHHhCCC
Q 006246 97 NV----------FVWNSVLRACLEHNEPWRVISLYSEMVGVDSKPNKFTYPTV-FKACSITEADKEGVQVHAHVVKNGLC 165 (654)
Q Consensus 97 ~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~ 165 (654)
++ ..|+.|..++.++-.+.+ +.+=.+|...|-.-+.++...= ..+-+...+...|.++-.+.+-.-+.
T Consensus 479 rv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 479 RVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred hHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 32 357777777777644431 2222344444433344332100 00112234567788887776666678
Q ss_pred CChhhHHHHHHHHHhc
Q 006246 166 GDVHVKSSGIQMYACF 181 (654)
Q Consensus 166 ~~~~~~~~li~~y~~~ 181 (654)
|...+|.+|+++|.+.
T Consensus 558 Ph~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 558 PHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhhhHHHHHHHhhhh
Confidence 9999999999999654
No 486
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.50 E-value=1.7e+02 Score=24.11 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=29.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCC
Q 006246 367 AMIGGLAMHGRADDAIELFFKMQREKMRPDRITFACVLSACAHAGM 412 (654)
Q Consensus 367 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 412 (654)
.++..+...+..-.|.++++.+.+.+...+..|...-|..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555566666667777788877777767777666666666655553
No 487
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.49 E-value=1.9e+02 Score=20.76 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=18.7
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 006246 108 CLEHNEPWRVISLYSEMVGVDSKPNKFTYPTVFKA 142 (654)
Q Consensus 108 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 142 (654)
+...|++-+|-++++++-.....|....+..+|..
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 34567777777777777654323333444444444
No 488
>PRK02287 hypothetical protein; Provisional
Probab=20.44 E-value=6.2e+02 Score=22.63 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHhCChHHHHHHHHHHHh
Q 006246 433 VEHYGCIVDLLGRAGYLAEAEEVISSMPMEPNAA-VWEALLGACRKHGEVEFGERLGKILLE 493 (654)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 493 (654)
..+..++.-++.-.|..++|.++++..+.-++-. .-..++..|.+..+-++..++-++.++
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3344566667777788888887777765444422 334577777777777666665555443
No 489
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.41 E-value=8.5e+02 Score=24.20 Aligned_cols=73 Identities=8% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH----------cCCHHH
Q 006246 382 IELFFKMQREKMRPDRITFACVLSACAHAGMIDRGLQALTYMQQMYGIDPEVEHYGCIVDLLGR----------AGYLAE 451 (654)
Q Consensus 382 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~g~~p~~~~~~~li~~~~~----------~g~~~~ 451 (654)
.++++.|...++.|.-..|.-+.-.+++.=.+...+.+++.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 577888888888888888887777778888888888888888763 2224444444432 577777
Q ss_pred HHHHHHhCC
Q 006246 452 AEEVISSMP 460 (654)
Q Consensus 452 A~~~~~~m~ 460 (654)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
Done!